1 chr9 96407983 96407983 1 + C G rs9695734 96407997 + 96407977 96408017 41 CTTCACCGAGCCCATCCTCGTCCCTAAGAAAGACGGGCTGG CTTCACGGAGCCCATCCTCGTCCCTAAGAAAGACGGGCTGG < 41bp 1 0.395516305547191 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96407997 chr9:96407983 synonymous SNV . 0 7 hm5U_associated_SNPs_21 0 0 1 0 2 PHF2 chr9:96407911 3'AG 96407911 Downstream 73bp
2 chr9 96407983 96407983 1 + C G rs9695734 96407997 + 96407977 96408017 41 CTTCACCGAGCCCATCCTCGTCCCTAAGAAAGACGGGCTGG CTTCACGGAGCCCATCCTCGTCCCTAAGAAAGACGGGCTGG < 41bp 1 0.395516305547191 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96407997 chr9:96407983 synonymous SNV . 0 7 hm5U_associated_SNPs_21 0 0 1 0 2 PHF2 chr9:96408071 5'GT 96408071 Upstream 89bp
3 chr22 19470305 19470305 1 + C T rs11912776 19470291 + 19470271 19470311 41 AACCTGATGAAGACACTATATTCTTTGTGTGTGACACCCAT AACCTGATGAAGACACTATATTCTTTGTGTGTGATACCCAT < 41bp 1 0.0135245264314256 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19470291 chr22:19470305 synonymous SNV . 0 35 hm5U_associated_SNPs_26 0 0 1 0 2 CDC45 chr22:19470213 3'AG 19470213 Downstream 93bp
4 chr22 19470305 19470305 1 + C T rs11912776 19470291 + 19470271 19470311 41 AACCTGATGAAGACACTATATTCTTTGTGTGTGACACCCAT AACCTGATGAAGACACTATATTCTTTGTGTGTGATACCCAT < 41bp 1 0.0135245264314256 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19470291 chr22:19470305 synonymous SNV . 0 35 hm5U_associated_SNPs_26 0 0 1 0 2 CDC45 chr22:19470350 5'GT 19470350 Upstream 46bp
5 chr22 19470303 19470303 1 + G C BLCA 19470291 + 19470271 19470311 41 AACCTGATGAAGACACTATATTCTTTGTGTGTGACACCCAT AACCTGATGAAGACACTATATTCTTTGTGTGTCACACCCAT < 41bp 1 0.0150042503901283 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19470291 chr22:19470303 nonsynonymous SNV 0.985 4 33 hm5U_associated_SNPs_27 0 0 1 0 2 CDC45 chr22:19470213 3'AG 19470213 Downstream 91bp
6 chr22 19470303 19470303 1 + G C BLCA 19470291 + 19470271 19470311 41 AACCTGATGAAGACACTATATTCTTTGTGTGTGACACCCAT AACCTGATGAAGACACTATATTCTTTGTGTGTCACACCCAT < 41bp 1 0.0150042503901283 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19470291 chr22:19470303 nonsynonymous SNV 0.985 4 33 hm5U_associated_SNPs_27 0 0 1 0 2 CDC45 chr22:19470350 5'GT 19470350 Upstream 48bp
7 chr6 7576652 7576652 1 + A T BRCA 7576645 + 7576625 7576665 41 ATTCCTTAGAATCCATGAAATTTGGAGATTCCAACACAGTC ATTCCTTAGAATCCATGAAATTTGGAGTTTCCAACACAGTC < 41bp 1 0.0663271562077647 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7576645 chr6:7576652 nonsynonymous SNV 1.000 3 28 hm5U_associated_SNPs_28 0 0 1 0 1 DSP chr6:7576689 5'GT 7576689 Upstream 38bp
8 chr11 107944202 107944202 1 + G A CESC 107944186 + 107944166 107944206 41 GTAAACTCGTCAAAGAAGCTTTTCAAGATGATCCACGATTT GTAAACTCGTCAAAGAAGCTTTTCAAGATGATCCACAATTT < 41bp 1 0.0767106861993823 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107944186 chr11:107944202 nonsynonymous SNV 0.997 3 37 hm5U_associated_SNPs_29 0 0 1 0 2 CUL5 chr11:107944117 3'AG 107944117 Downstream 86bp
9 chr11 107944202 107944202 1 + G A CESC 107944186 + 107944166 107944206 41 GTAAACTCGTCAAAGAAGCTTTTCAAGATGATCCACGATTT GTAAACTCGTCAAAGAAGCTTTTCAAGATGATCCACAATTT < 41bp 1 0.0767106861993823 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107944186 chr11:107944202 nonsynonymous SNV 0.997 3 37 hm5U_associated_SNPs_29 0 0 1 0 2 CUL5 chr11:107944224 5'GT 107944224 Upstream 23bp
10 chr15 27222246 27222246 1 + C T CESC 27222239 + 27222219 27222259 41 TCCCAAGACACCGACGTGACTCTTATTCTCAACAAGTTGCT TCCCAAGACACCGACGTGACTCTTATTTTCAACAAGTTGCT < 41bp 1 0.0180393511775862 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control GABRG3 ENSG00000182256 CDS Human protein_coding chr15:27222239 chr15:27222246 nonsynonymous SNV 1.000 3 28 hm5U_associated_SNPs_32 0 0 0 0 2 GABRG3 chr15:27222149 3'AG 27222149 Downstream 98bp
11 chr15 27222246 27222246 1 + C T CESC 27222239 + 27222219 27222259 41 TCCCAAGACACCGACGTGACTCTTATTCTCAACAAGTTGCT TCCCAAGACACCGACGTGACTCTTATTTTCAACAAGTTGCT < 41bp 1 0.0180393511775862 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control GABRG3 ENSG00000182256 CDS Human protein_coding chr15:27222239 chr15:27222246 nonsynonymous SNV 1.000 3 28 hm5U_associated_SNPs_32 0 0 0 0 2 GABRG3 chr15:27222297 5'GT 27222297 Upstream 52bp
12 chr3 47044542 47044542 1 + T C COAD 47044529 + 47044509 47044549 41 AGCTGGTGCCCAACCATCACTTCGACCCTCACCTGGAAGCC AGCTGGTGCCCAACCATCACTTCGACCCTCACCCGGAAGCC < 41bp 1 0.462833033514868 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47044529 chr3:47044542 nonsynonymous SNV 0.988 1 34 hm5U_associated_SNPs_33 0 0 0 0 2 NBEAL2 chr3:47044447 3'AG 47044447 Downstream 96bp
13 chr3 47044542 47044542 1 + T C COAD 47044529 + 47044509 47044549 41 AGCTGGTGCCCAACCATCACTTCGACCCTCACCTGGAAGCC AGCTGGTGCCCAACCATCACTTCGACCCTCACCCGGAAGCC < 41bp 1 0.462833033514868 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47044529 chr3:47044542 nonsynonymous SNV 0.988 1 34 hm5U_associated_SNPs_33 0 0 0 0 2 NBEAL2 chr3:47044571 5'GT 47044571 Upstream 30bp
14 chrX 41027380 41027380 1 + C T COAD 41027378 + 41027358 41027398 41 TTGTGCAAGACAGGAAGCTGTTCGAATGGTTCGAGTATTAA TTGTGCAAGACAGGAAGCTGTTTGAATGGTTCGAGTATTAA < 41bp 1 0.0381797122931495 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41027378 chrX:41027380 stopgain 0.999 1 23 hm5U_associated_SNPs_34 0 0 1 0 1 USP9X chrX:41027471 5'GT 41027471 Upstream 92bp
15 chr22 19470286 19470286 1 + C A GBM 19470291 + 19470271 19470311 41 AACCTGATGAAGACACTATATTCTTTGTGTGTGACACCCAT AACCTGATGAAGACAATATATTCTTTGTGTGTGACACCCAT < 41bp 1 0.0167493775535334 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19470291 chr22:19470286 nonsynonymous SNV 0.516 1 16 hm5U_associated_SNPs_35 0 0 1 0 2 CDC45 chr22:19470213 3'AG 19470213 Downstream 74bp
16 chr22 19470286 19470286 1 + C A GBM 19470291 + 19470271 19470311 41 AACCTGATGAAGACACTATATTCTTTGTGTGTGACACCCAT AACCTGATGAAGACAATATATTCTTTGTGTGTGACACCCAT < 41bp 1 0.0167493775535334 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19470291 chr22:19470286 nonsynonymous SNV 0.516 1 16 hm5U_associated_SNPs_35 0 0 1 0 2 CDC45 chr22:19470350 5'GT 19470350 Upstream 65bp
17 chr1 67861294 67861294 1 + C A HNSC 67861297 + 67861277 67861317 41 GCCTGAAGATCCTGAACCGCTGGTCATCAGTGAAGTCCTTC GCCTGAAGATCCTGAACAGCTGGTCATCAGTGAAGTCCTTC < 41bp 1 0.014145287631179 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67861297 chr1:67861294 nonsynonymous SNV 0.705 3 18 hm5U_associated_SNPs_36 0 0 0 0 1 IL12RB2 chr1:67861230 3'AG 67861230 Downstream 65bp
18 chr1 67861293 67861293 1 + C A HNSC 67861297 + 67861277 67861317 41 GCCTGAAGATCCTGAACCGCTGGTCATCAGTGAAGTCCTTC GCCTGAAGATCCTGAAACGCTGGTCATCAGTGAAGTCCTTC < 41bp 1 0.0154292858289722 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67861297 chr1:67861293 nonsynonymous SNV 0.708 0 17 hm5U_associated_SNPs_37 0 0 0 0 1 IL12RB2 chr1:67861230 3'AG 67861230 Downstream 64bp
19 chr15 27222233 27222233 1 + C A HNSC 27222239 + 27222219 27222259 41 TCCCAAGACACCGACGTGACTCTTATTCTCAACAAGTTGCT TCCCAAGACACCGAAGTGACTCTTATTCTCAACAAGTTGCT < 41bp 1 0.0292985478138451 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control GABRG3 ENSG00000182256 CDS Human protein_coding chr15:27222239 chr15:27222233 nonsynonymous SNV 0.960 1 15 hm5U_associated_SNPs_38 0 0 0 0 2 GABRG3 chr15:27222149 3'AG 27222149 Downstream 85bp
20 chr15 27222233 27222233 1 + C A HNSC 27222239 + 27222219 27222259 41 TCCCAAGACACCGACGTGACTCTTATTCTCAACAAGTTGCT TCCCAAGACACCGAAGTGACTCTTATTCTCAACAAGTTGCT < 41bp 1 0.0292985478138451 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control GABRG3 ENSG00000182256 CDS Human protein_coding chr15:27222239 chr15:27222233 nonsynonymous SNV 0.960 1 15 hm5U_associated_SNPs_38 0 0 0 0 2 GABRG3 chr15:27222297 5'GT 27222297 Upstream 65bp
21 chr22 19470284 19470284 1 + C T LGG 19470291 + 19470271 19470311 41 AACCTGATGAAGACACTATATTCTTTGTGTGTGACACCCAT AACCTGATGAAGATACTATATTCTTTGTGTGTGACACCCAT < 41bp 1 0.0121000272415612 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19470291 chr22:19470284 synonymous SNV . 0 14 hm5U_associated_SNPs_39 0 0 1 0 2 CDC45 chr22:19470213 3'AG 19470213 Downstream 72bp
22 chr22 19470284 19470284 1 + C T LGG 19470291 + 19470271 19470311 41 AACCTGATGAAGACACTATATTCTTTGTGTGTGACACCCAT AACCTGATGAAGATACTATATTCTTTGTGTGTGACACCCAT < 41bp 1 0.0121000272415612 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19470291 chr22:19470284 synonymous SNV . 0 14 hm5U_associated_SNPs_39 0 0 1 0 2 CDC45 chr22:19470350 5'GT 19470350 Upstream 67bp
23 chr22 19470274 19470274 1 + C A LGG 19470291 + 19470271 19470311 41 AACCTGATGAAGACACTATATTCTTTGTGTGTGACACCCAT AACATGATGAAGACACTATATTCTTTGTGTGTGACACCCAT < 41bp 1 0.0210525444255303 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19470291 chr22:19470274 nonsynonymous SNV 0.994 4 4 hm5U_associated_SNPs_40 0 0 1 0 2 CDC45 chr22:19470213 3'AG 19470213 Downstream 62bp
24 chr22 19470274 19470274 1 + C A LGG 19470291 + 19470271 19470311 41 AACCTGATGAAGACACTATATTCTTTGTGTGTGACACCCAT AACATGATGAAGACACTATATTCTTTGTGTGTGACACCCAT < 41bp 1 0.0210525444255303 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19470291 chr22:19470274 nonsynonymous SNV 0.994 4 4 hm5U_associated_SNPs_40 0 0 1 0 2 CDC45 chr22:19470350 5'GT 19470350 Upstream 77bp
25 chr3 47044544 47044544 1 + G T LUAD 47044529 + 47044509 47044549 41 AGCTGGTGCCCAACCATCACTTCGACCCTCACCTGGAAGCC AGCTGGTGCCCAACCATCACTTCGACCCTCACCTGTAAGCC < 41bp 1 0.419373137040815 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47044529 chr3:47044544 stopgain 0.988 1 36 hm5U_associated_SNPs_41 0 0 0 0 2 NBEAL2 chr3:47044447 3'AG 47044447 Downstream 98bp
26 chr3 47044544 47044544 1 + G T LUAD 47044529 + 47044509 47044549 41 AGCTGGTGCCCAACCATCACTTCGACCCTCACCTGGAAGCC AGCTGGTGCCCAACCATCACTTCGACCCTCACCTGTAAGCC < 41bp 1 0.419373137040815 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47044529 chr3:47044544 stopgain 0.988 1 36 hm5U_associated_SNPs_41 0 0 0 0 2 NBEAL2 chr3:47044571 5'GT 47044571 Upstream 28bp
27 chr9 96408013 96408013 1 + G T LUAD 96407997 + 96407977 96408017 41 CTTCACCGAGCCCATCCTCGTCCCTAAGAAAGACGGGCTGG CTTCACCGAGCCCATCCTCGTCCCTAAGAAAGACGGTCTGG < 41bp 1 0.253273193984035 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96407997 chr9:96408013 synonymous SNV . 0 37 hm5U_associated_SNPs_42 0 0 1 0 1 PHF2 chr9:96408071 5'GT 96408071 Upstream 59bp
28 chr9 96408012 96408012 1 + G T LUAD 96407997 + 96407977 96408017 41 CTTCACCGAGCCCATCCTCGTCCCTAAGAAAGACGGGCTGG CTTCACCGAGCCCATCCTCGTCCCTAAGAAAGACGTGCTGG < 41bp 1 0.286306105057198 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96407997 chr9:96408012 nonsynonymous SNV 0.989 4 36 hm5U_associated_SNPs_43 0 0 1 0 1 PHF2 chr9:96408071 5'GT 96408071 Upstream 60bp
29 chr1 67861305 67861305 1 + A G LUSC 67861297 + 67861277 67861317 41 GCCTGAAGATCCTGAACCGCTGGTCATCAGTGAAGTCCTTC GCCTGAAGATCCTGAACCGCTGGTCATCGGTGAAGTCCTTC < 41bp 1 0.0179676399076589 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67861297 chr1:67861305 nonsynonymous SNV 0.798 0 29 hm5U_associated_SNPs_44 0 0 0 0 1 IL12RB2 chr1:67861230 3'AG 67861230 Downstream 76bp
30 chr22 32297775 32297775 1 + G T LUSC 32297758 + 32297738 32297778 41 CGAAACGTACTGGGATCGAATGCACCTCTTCCAGGAAGCCA CGAAACGTACTGGGATCGAATGCACCTCTTCCAGGAATCCA < 41bp 1 0.0566021536305525 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32297758 chr22:32297775 nonsynonymous SNV 1.000 0 38 hm5U_associated_SNPs_45 0 0 0 2 2 DEPDC5 chr22:32297728 3'AG 32297728 Downstream 48bp
31 chr22 32297775 32297775 1 + G T LUSC 32297758 + 32297738 32297778 41 CGAAACGTACTGGGATCGAATGCACCTCTTCCAGGAAGCCA CGAAACGTACTGGGATCGAATGCACCTCTTCCAGGAATCCA < 41bp 1 0.0566021536305525 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32297758 chr22:32297775 nonsynonymous SNV 1.000 0 38 hm5U_associated_SNPs_45 0 0 0 2 2 DEPDC5 chr22:32297788 5'GT 32297788 Upstream 14bp
32 chr15 27222257 27222257 1 + G C LUSC 27222239 + 27222219 27222259 41 TCCCAAGACACCGACGTGACTCTTATTCTCAACAAGTTGCT TCCCAAGACACCGACGTGACTCTTATTCTCAACAAGTTCCT < 41bp 1 0.0305510139055812 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control GABRG3 ENSG00000182256 CDS Human protein_coding chr15:27222239 chr15:27222257 nonsynonymous SNV 0.999 5 39 hm5U_associated_SNPs_46 0 0 0 0 1 GABRG3 chr15:27222297 5'GT 27222297 Upstream 41bp
33 chr22 32297747 32297747 1 + C G LUSC 32297758 + 32297738 32297778 41 CGAAACGTACTGGGATCGAATGCACCTCTTCCAGGAAGCCA CGAAACGTAGTGGGATCGAATGCACCTCTTCCAGGAAGCCA < 41bp 1 0.061203635309695 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32297758 chr22:32297747 stopgain 0.997 0 10 hm5U_associated_SNPs_47 0 0 0 1 2 DEPDC5 chr22:32297728 3'AG 32297728 Downstream 20bp
34 chr22 32297747 32297747 1 + C G LUSC 32297758 + 32297738 32297778 41 CGAAACGTACTGGGATCGAATGCACCTCTTCCAGGAAGCCA CGAAACGTAGTGGGATCGAATGCACCTCTTCCAGGAAGCCA < 41bp 1 0.061203635309695 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32297758 chr22:32297747 stopgain 0.997 0 10 hm5U_associated_SNPs_47 0 0 0 1 2 DEPDC5 chr22:32297788 5'GT 32297788 Upstream 42bp
35 chr9 96408008 96408008 1 + G A SKCM 96407997 + 96407977 96408017 41 CTTCACCGAGCCCATCCTCGTCCCTAAGAAAGACGGGCTGG CTTCACCGAGCCCATCCTCGTCCCTAAGAAAAACGGGCTGG < 41bp 1 0.357712043663284 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96407997 chr9:96408008 nonsynonymous SNV 0.998 1 32 hm5U_associated_SNPs_50 0 0 1 0 2 PHF2 chr9:96407911 3'AG 96407911 Downstream 98bp
36 chr9 96408008 96408008 1 + G A SKCM 96407997 + 96407977 96408017 41 CTTCACCGAGCCCATCCTCGTCCCTAAGAAAGACGGGCTGG CTTCACCGAGCCCATCCTCGTCCCTAAGAAAAACGGGCTGG < 41bp 1 0.357712043663284 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96407997 chr9:96408008 nonsynonymous SNV 0.998 1 32 hm5U_associated_SNPs_50 0 0 1 0 2 PHF2 chr9:96408071 5'GT 96408071 Upstream 64bp
37 chr9 96407999 96407999 1 + C T SKCM 96407997 + 96407977 96408017 41 CTTCACCGAGCCCATCCTCGTCCCTAAGAAAGACGGGCTGG CTTCACCGAGCCCATCCTCGTCTCTAAGAAAGACGGGCTGG < 41bp 1 0.299766650569382 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96407997 chr9:96407999 nonsynonymous SNV 0.998 0 23 hm5U_associated_SNPs_51 0 0 1 0 2 PHF2 chr9:96407911 3'AG 96407911 Downstream 89bp
38 chr9 96407999 96407999 1 + C T SKCM 96407997 + 96407977 96408017 41 CTTCACCGAGCCCATCCTCGTCCCTAAGAAAGACGGGCTGG CTTCACCGAGCCCATCCTCGTCTCTAAGAAAGACGGGCTGG < 41bp 1 0.299766650569382 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96407997 chr9:96407999 nonsynonymous SNV 0.998 0 23 hm5U_associated_SNPs_51 0 0 1 0 2 PHF2 chr9:96408071 5'GT 96408071 Upstream 73bp
39 chr6 7576628 7576628 1 + C T SKCM 7576645 + 7576625 7576665 41 ATTCCTTAGAATCCATGAAATTTGGAGATTCCAACACAGTC ATTTCTTAGAATCCATGAAATTTGGAGATTCCAACACAGTC < 41bp 1 0.0681705978782989 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7576645 chr6:7576628 nonsynonymous SNV 0.997 1 4 hm5U_associated_SNPs_52 0 0 1 0 1 DSP chr6:7576689 5'GT 7576689 Upstream 62bp
40 chr19 50962182 50962182 1 + C T SKCM 50962193 + 50962173 50962213 41 AGAGCCACCCAAGATCCGGCTTCCCCGCCATCTCCGCCAGA AGAGCCACCTAAGATCCGGCTTCCCCGCCATCTCCGCCAGA < 41bp 1 0.770043074194789 NA NA experiment 0.459913851610422 Functional Loss 31361898;GSE109183;FICC-Seq;HAP1;Control MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50962193 chr19:50962182 synonymous SNV . 0 10 hm5U_associated_SNPs_53 0 0 0 0 2 MYBPC2 chr19:50962175 3'AG 50962175 Downstream 8bp
41 chr19 50962182 50962182 1 + C T SKCM 50962193 + 50962173 50962213 41 AGAGCCACCCAAGATCCGGCTTCCCCGCCATCTCCGCCAGA AGAGCCACCTAAGATCCGGCTTCCCCGCCATCTCCGCCAGA < 41bp 1 0.770043074194789 NA NA experiment 0.459913851610422 Functional Loss 31361898;GSE109183;FICC-Seq;HAP1;Control MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50962193 chr19:50962182 synonymous SNV . 0 10 hm5U_associated_SNPs_53 0 0 0 0 2 MYBPC2 chr19:50962263 5'GT 50962263 Upstream 82bp
42 chr15 27222237 27222237 1 + A G STAD 27222239 + 27222219 27222259 41 TCCCAAGACACCGACGTGACTCTTATTCTCAACAAGTTGCT TCCCAAGACACCGACGTGGCTCTTATTCTCAACAAGTTGCT < 41bp 1 0.0338598105503591 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control GABRG3 ENSG00000182256 CDS Human protein_coding chr15:27222239 chr15:27222237 nonsynonymous SNV 0.991 4 19 hm5U_associated_SNPs_54 0 0 0 0 2 GABRG3 chr15:27222149 3'AG 27222149 Downstream 89bp
43 chr15 27222237 27222237 1 + A G STAD 27222239 + 27222219 27222259 41 TCCCAAGACACCGACGTGACTCTTATTCTCAACAAGTTGCT TCCCAAGACACCGACGTGGCTCTTATTCTCAACAAGTTGCT < 41bp 1 0.0338598105503591 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control GABRG3 ENSG00000182256 CDS Human protein_coding chr15:27222239 chr15:27222237 nonsynonymous SNV 0.991 4 19 hm5U_associated_SNPs_54 0 0 0 0 2 GABRG3 chr15:27222297 5'GT 27222297 Upstream 61bp
44 chr17 18088229 18088229 1 + T A STAD 18088215 + 18088195 18088235 41 GCCCCATCGTGTCCGTGTCCTTCTTTAGCGACTCTGCGCTG GCCCCATCGTGTCCGTGTCCTTCTTTAGCGACTCAGCGCTG < 41bp 1 0.60951328006755 NA NA experiment 0.7809734398649 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control ALKBH5 ENSG00000091542 CDS Human protein_coding chr17:18088215 chr17:18088229 synonymous SNV . 0 35 hm5U_associated_SNPs_55 0 0 1 0 1 ALKBH5 chr17:18088327 5'GT 18088327 Upstream 99bp
45 chr22 19470293 19470293 1 + C A UCEC 19470291 + 19470271 19470311 41 AACCTGATGAAGACACTATATTCTTTGTGTGTGACACCCAT AACCTGATGAAGACACTATATTATTTGTGTGTGACACCCAT < 41bp 1 0.0155247549843941 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19470291 chr22:19470293 nonsynonymous SNV 0.772 3 23 hm5U_associated_SNPs_56 0 0 1 0 2 CDC45 chr22:19470213 3'AG 19470213 Downstream 81bp
46 chr22 19470293 19470293 1 + C A UCEC 19470291 + 19470271 19470311 41 AACCTGATGAAGACACTATATTCTTTGTGTGTGACACCCAT AACCTGATGAAGACACTATATTATTTGTGTGTGACACCCAT < 41bp 1 0.0155247549843941 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19470291 chr22:19470293 nonsynonymous SNV 0.772 3 23 hm5U_associated_SNPs_56 0 0 1 0 2 CDC45 chr22:19470350 5'GT 19470350 Upstream 58bp
47 chr1 67861277 67861277 1 + G A UCEC 67861297 + 67861277 67861317 41 GCCTGAAGATCCTGAACCGCTGGTCATCAGTGAAGTCCTTC ACCTGAAGATCCTGAACCGCTGGTCATCAGTGAAGTCCTTC < 41bp 1 0.0128400220604044 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67861297 chr1:67861277 synonymous SNV 0.199 0 1 hm5U_associated_SNPs_58 0 0 0 0 1 IL12RB2 chr1:67861230 3'AG 67861230 Downstream 48bp
48 chr22 32297739 32297739 1 + G A UCEC 32297758 + 32297738 32297778 41 CGAAACGTACTGGGATCGAATGCACCTCTTCCAGGAAGCCA CAAAACGTACTGGGATCGAATGCACCTCTTCCAGGAAGCCA < 41bp 1 0.0541848593404311 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32297758 chr22:32297739 nonsynonymous SNV 0.978 3 2 hm5U_associated_SNPs_59 0 0 0 1 2 DEPDC5 chr22:32297728 3'AG 32297728 Downstream 12bp
49 chr22 32297739 32297739 1 + G A UCEC 32297758 + 32297738 32297778 41 CGAAACGTACTGGGATCGAATGCACCTCTTCCAGGAAGCCA CAAAACGTACTGGGATCGAATGCACCTCTTCCAGGAAGCCA < 41bp 1 0.0541848593404311 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32297758 chr22:32297739 nonsynonymous SNV 0.978 3 2 hm5U_associated_SNPs_59 0 0 0 1 2 DEPDC5 chr22:32297788 5'GT 32297788 Upstream 50bp
50 chr9 96408011 96408011 1 + G A UCEC 96407997 + 96407977 96408017 41 CTTCACCGAGCCCATCCTCGTCCCTAAGAAAGACGGGCTGG CTTCACCGAGCCCATCCTCGTCCCTAAGAAAGACAGGCTGG < 41bp 1 0.294597758311729 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96407997 chr9:96408011 nonsynonymous SNV 0.990 4 35 hm5U_associated_SNPs_60 0 0 1 0 1 PHF2 chr9:96408071 5'GT 96408071 Upstream 61bp
51 chr22 19470289 19470289 1 + T C UCEC 19470291 + 19470271 19470311 41 AACCTGATGAAGACACTATATTCTTTGTGTGTGACACCCAT AACCTGATGAAGACACTACATTCTTTGTGTGTGACACCCAT < 41bp 1 0.0160526519349878 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19470291 chr22:19470289 nonsynonymous SNV 0.558 0 19 hm5U_associated_SNPs_62 0 0 1 0 2 CDC45 chr22:19470213 3'AG 19470213 Downstream 77bp
52 chr22 19470289 19470289 1 + T C UCEC 19470291 + 19470271 19470311 41 AACCTGATGAAGACACTATATTCTTTGTGTGTGACACCCAT AACCTGATGAAGACACTACATTCTTTGTGTGTGACACCCAT < 41bp 1 0.0160526519349878 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19470291 chr22:19470289 nonsynonymous SNV 0.558 0 19 hm5U_associated_SNPs_62 0 0 1 0 2 CDC45 chr22:19470350 5'GT 19470350 Upstream 62bp
53 chrX 41027375 41027375 1 + C A UCEC 41027378 + 41027358 41027398 41 TTGTGCAAGACAGGAAGCTGTTCGAATGGTTCGAGTATTAA TTGTGCAAGACAGGAAGATGTTCGAATGGTTCGAGTATTAA < 41bp 1 0.0368006028400633 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41027378 chrX:41027375 nonsynonymous SNV 1.000 4 18 hm5U_associated_SNPs_64 0 0 1 0 1 USP9X chrX:41027471 5'GT 41027471 Upstream 97bp
54 chr7 19184562 19184562 1 + T C COAD 19184562 + 19184542 19184582 41 GACGATGGCCAGGCGGAGGGTCTCGATCCGGGACAGCCTTT GACGATGGCCAGGCGGAGGGCCTCGATCCGGGACAGCCTTT Direct Loss 0.999086594429725 0 NA NA prediction 0.99817318885945 Functional Loss - FERD3L ENSG00000146618 CDS Human protein_coding chr7:19184562 chr7:19184562 nonsynonymous SNV 1.000 5 21 hm5U_associated_SNPs_109 0 0 0 0 1 FERD3L chr7:19184510 3'AG 19184510 Downstream 53bp
55 chr17 18333079 18333079 1 + T C LGG 18333079 + 18333059 18333099 41 AGGTGTGGACCTGAGCCGCATCCTGAACGAGATGCGTGAGC AGGTGTGGACCTGAGCCGCACCCTGAACGAGATGCGTGAGC Direct Loss 0.997825920011115 0 NA NA prediction 0.995651840022229 Functional Loss - KRT17P2 ENSG00000186831 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:18333079 chr17:18333079 . . 0 21 hm5U_associated_SNPs_172 0 0 0 0 2 KRT17P2 chr17:18332997 3'AG 18332997 Downstream 83bp
56 chr17 18333079 18333079 1 + T C LGG 18333079 + 18333059 18333099 41 AGGTGTGGACCTGAGCCGCATCCTGAACGAGATGCGTGAGC AGGTGTGGACCTGAGCCGCACCCTGAACGAGATGCGTGAGC Direct Loss 0.997825920011115 0 NA NA prediction 0.995651840022229 Functional Loss - KRT17P2 ENSG00000186831 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:18333079 chr17:18333079 . . 0 21 hm5U_associated_SNPs_172 0 0 0 0 2 KRT17P2 chr17:18333158 5'GT 18333158 Upstream 80bp
57 chr7 44079940 44079940 1 - A C rs548074544 44079940 - 44079920 44079960 41 GTTCATCGCCGTCACCAGCTTCCTGTGCCTGCGCTTCTTCT GTTCATCGCCGTCACCAGCTGCCTGTGCCTGCGCTTCTTCT Direct Loss 0.997245505516345 0 NA NA prediction 0.99449101103269 Functional Loss - LINC00957;RASA4CP ENSG00000228903;ENSG00000235314 ncRNA_exonic Human other chr7:44079940 chr7:44079940 . . 0 21 hm5U_associated_SNPs_206 0 0 0 0 1 LINC00957;RASA4CP chr7:44079968 3'AG 44079968 Downstream 29bp
58 chr2 96458228 96458228 1 + T C UCEC 96458228 + 96458208 96458248 41 ATGAAGCTGGAGGCTGTCACTCCATTCCTGGGCAAGTATCG ATGAAGCTGGAGGCTGTCACCCCATTCCTGGGCAAGTATCG Direct Loss 0.996784933199207 0 NA NA prediction 0.993569866398414 Functional Loss - TRIM43;LINC00342 ENSG00000237510 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96458228 chr2:96458228 . . 0 21 hm5U_associated_SNPs_233 0 0 0 0 2 TRIM43;LINC00342 chr2:96458181 3'AG 96458181 Downstream 48bp
59 chr2 96458228 96458228 1 + T C UCEC 96458228 + 96458208 96458248 41 ATGAAGCTGGAGGCTGTCACTCCATTCCTGGGCAAGTATCG ATGAAGCTGGAGGCTGTCACCCCATTCCTGGGCAAGTATCG Direct Loss 0.996784933199207 0 NA NA prediction 0.993569866398414 Functional Loss - TRIM43;LINC00342 ENSG00000237510 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96458228 chr2:96458228 . . 0 21 hm5U_associated_SNPs_233 0 0 0 0 2 TRIM43;LINC00342 chr2:96458294 5'GT 96458294 Upstream 67bp
60 chr7 142499857 142499857 1 + T C LUAD 142499857 + 142499837 142499877 41 TGCTAGGGAAGGCCACCTTGTATGCCGTGCTGGTCAGTGCC TGCTAGGGAAGGCCACCTTGCATGCCGTGCTGGTCAGTGCC Direct Loss 0.996388032316046 0 NA NA prediction 0.992776064632091 Functional Loss - PRSS3P2;EPHB6 ENSG00000211772 CDS Human TR_C_gene chr7:142499857 chr7:142499857 unknown . 0 21 hm5U_associated_SNPs_251 0 0 1 0 1 PRSS3P2;EPHB6 chr7:142499895 5'GT 142499895 Upstream 39bp
61 chr19 1383582 1383582 1 + T G rs138144610 1383582 + 1383562 1383602 41 GTCTCTGTGGCGCAATCGGTTAGCGCGTTCGGCTGTTAACC GTCTCTGTGGCGCAATCGGTGAGCGCGTTCGGCTGTTAACC Direct Loss 0.996322224013756 0 NA NA prediction 0.992644448027513 Functional Loss - NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383582 chr19:1383582 . . 0 21 hm5U_associated_SNPs_256 0 0 1 0 1 NDUFS7 chr19:1383607 5'GT 1383607 Upstream 26bp
62 chr19 984533 984533 1 + T C rs2301810 984533 + 984513 984553 41 GCGGCGCAGCTGGGCAAGAATTACATCAGCGCCTGGGAGCT GCGGCGCAGCTGGGCAAGAACTACATCAGCGCCTGGGAGCT Direct Loss 0.99626513702561 0 NA NA prediction 0.992530274051219 Functional Loss - WDR18 ENSG00000065268 CDS Human protein_coding chr19:984533 chr19:984533 synonymous SNV . 0 21 hm5U_associated_SNPs_259 0 0 1 0 1 WDR18 chr19:984563 5'GT 984563 Upstream 31bp
63 chr15 100340131 100340131 1 - A T GBM 100340131 - 100340111 100340151 41 GAGCAGGCAGACCAAGGAGTTCATCTTCTCGGAGCTGCTGT GAGCAGGCAGACCAAGGAGTACATCTTCTCGGAGCTGCTGT Direct Loss 0.995821625392496 0 NA NA prediction 0.991643250784991 Functional Loss - DNM1P46 ENSG00000182397 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:100340131 chr15:100340131 . . 0 21 hm5U_associated_SNPs_285 0 0 0 0 1 DNM1P46 chr15:100340145 3'AG 100340145 Downstream 15bp
64 chr1 998529 998529 1 + T G UCEC 998529 + 998509 998549 41 CCAGAGGTCAGCGTGGGGACTTCCTTGCCAGGCCCAGTGAG CCAGAGGTCAGCGTGGGGACGTCCTTGCCAGGCCCAGTGAG Direct Loss 0.995427183524623 0 NA NA prediction 0.990854367049247 Functional Loss - AGRN;RNF223 ENSG00000217801;ENSG00000273443 ncRNA_exonic Human other chr1:998529 chr1:998529 . . 0 21 hm5U_associated_SNPs_303 0 0 1 0 2 AGRN;RNF223 chr1:998459 3'AG 998459 Downstream 71bp
65 chr1 998529 998529 1 + T G UCEC 998529 + 998509 998549 41 CCAGAGGTCAGCGTGGGGACTTCCTTGCCAGGCCCAGTGAG CCAGAGGTCAGCGTGGGGACGTCCTTGCCAGGCCCAGTGAG Direct Loss 0.995427183524623 0 NA NA prediction 0.990854367049247 Functional Loss - AGRN;RNF223 ENSG00000217801;ENSG00000273443 ncRNA_exonic Human other chr1:998529 chr1:998529 . . 0 21 hm5U_associated_SNPs_303 0 0 1 0 2 AGRN;RNF223 chr1:998581 5'GT 998581 Upstream 53bp
66 chr19 8464848 8464848 1 + T G COAD 8464848 + 8464828 8464868 41 AGAGCACCATCGGCGTGGAGTTCGCCACCCGCAGCATCCAG AGAGCACCATCGGCGTGGAGGTCGCCACCCGCAGCATCCAG Direct Loss 0.995214560065637 0 NA NA prediction 0.990429120131274 Functional Loss - RAB11B ENSG00000185236 CDS Human protein_coding chr19:8464848 chr19:8464848 nonsynonymous SNV 0.999 4 21 hm5U_associated_SNPs_319 0 0 1 0 1 RAB11B chr19:8464942 5'GT 8464942 Upstream 95bp
67 chr4 105412134 105412134 1 + T C UCEC 105412134 + 105412114 105412154 41 CTGCGGGCAGTCTGCCAGATTGGCAATTTGAAACGCACTGT CTGCGGGCAGTCTGCCAGATCGGCAATTTGAAACGCACTGT Direct Loss 0.995158696709795 0 NA NA prediction 0.99031739341959 Functional Loss - CXXC4 ENSG00000168772 CDS Human protein_coding chr4:105412134 chr4:105412134 nonsynonymous SNV 1.000 0 21 hm5U_associated_SNPs_322 0 0 0 0 1 CXXC4 chr4:105412217 5'GT 105412217 Upstream 84bp
68 chr2 55277294 55277294 1 + T A rs201394469 55277294 + 55277274 55277314 41 GCACCTCCAGCTCCTCCAGGTCTTCGTCCTCGTCCTCCTCT GCACCTCCAGCTCCTCCAGGACTTCGTCCTCGTCCTCCTCT Direct Loss 0.99478230379098 0 NA NA prediction 0.989564607581961 Functional Loss - RTN4 ENSG00000115310 CDS Human protein_coding chr2:55277294 chr2:55277294 nonsynonymous SNV 0.126 0 21 hm5U_associated_SNPs_340 0 0 0 0 1 RTN4 chr2:55277337 5'GT 55277337 Upstream 44bp
69 chr9 130580093 130580093 1 + T C rs10987746 130580093 + 130580073 130580113 41 CTACATGGATGTGCGGGTGGTTAGATTCCTGGGTGGGAGGG CTACATGGATGTGCGGGTGGCTAGATTCCTGGGTGGGAGGG Direct Loss 0.99453488281282 0 NA NA prediction 0.989069765625641 Functional Loss - LOC102723566 ENSG00000225032 ncRNA_exonic Human antisense chr9:130580093 chr9:130580093 . . 0 21 hm5U_associated_SNPs_353 0 0 1 0 2 LOC102723566 chr9:130580038 3'AG 130580038 Downstream 56bp
70 chr9 130580093 130580093 1 + T C rs10987746 130580093 + 130580073 130580113 41 CTACATGGATGTGCGGGTGGTTAGATTCCTGGGTGGGAGGG CTACATGGATGTGCGGGTGGCTAGATTCCTGGGTGGGAGGG Direct Loss 0.99453488281282 0 NA NA prediction 0.989069765625641 Functional Loss - LOC102723566 ENSG00000225032 ncRNA_exonic Human antisense chr9:130580093 chr9:130580093 . . 0 21 hm5U_associated_SNPs_353 0 0 1 0 2 LOC102723566 chr9:130580136 5'GT 130580136 Upstream 44bp
71 chr10 99186140 99186140 1 + T C COAD 99186140 + 99186120 99186160 41 AGAACCGCTTCAGCGGCTGGTACGACGCCGACCTGAGCCCG AGAACCGCTTCAGCGGCTGGCACGACGCCGACCTGAGCCCG Direct Loss 0.994441049496797 0 NA NA prediction 0.988882098993594 Functional Loss - PGAM1 ENSG00000171314 CDS Human protein_coding chr10:99186140 chr10:99186140 nonsynonymous SNV 0.994 0 21 hm5U_associated_SNPs_362 0 0 0 0 1 PGAM1 chr10:99186203 5'GT 99186203 Upstream 64bp
72 chrX 47040634 47040634 1 + T C rs143203694 47040634 + 47040614 47040654 41 GCCTCCCAAGGTGGGGAGGGTACCTGGGCCACCTCCGAGGA GCCTCCCAAGGTGGGGAGGGCACCTGGGCCACCTCCGAGGA Direct Loss 0.994430495948322 0 NA NA prediction 0.988860991896643 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47040634 chrX:47040634 synonymous SNV . 0 21 hm5U_associated_SNPs_364 1 0 1 0 1 RBM10 chrX:47040614 3'AG 47040614 Downstream 21bp
73 chr4 109088923 109088923 1 + T C SKCM 109088923 + 109088903 109088943 41 TCCTCCGGAGAGTTGGGGCATCCCGGCGGCTCTGTAATCTC TCCTCCGGAGAGTTGGGGCACCCCGGCGGCTCTGTAATCTC Direct Loss 0.994097511472753 0 NA NA prediction 0.988195022945506 Functional Loss - LEF1 ENSG00000138795 CDS Human processed_transcript chr4:109088923 chr4:109088923 nonsynonymous SNV 0.999 4 21 hm5U_associated_SNPs_381 0 0 0 0 1 LEF1-AS1 chr4:109088989 5'GT 109088989 Upstream 67bp
74 chr1 70671419 70671419 1 + T C rs530842866 70671419 + 70671399 70671439 41 TGGAGGACAGAGAAGCCTTTTCCGTTGCCGGTGCCGGCCTA TGGAGGACAGAGAAGCCTTTCCCGTTGCCGGTGCCGGCCTA Direct Loss 0.994014773673353 0 NA NA prediction 0.988029547346706 Functional Loss - SRSF11 ENSG00000116754 UTR5 Human protein_coding chr1:70671419 chr1:70671419 . . 0 21 hm5U_associated_SNPs_387 0 0 1 0 1 SRSF11 chr1:70671463 5'GT 70671463 Upstream 45bp
75 chr15 80445460 80445460 1 + T G UCEC 80445460 + 80445440 80445480 41 ACAACCTGCCCTACGGCGTCTTCTCGACCAGAGGCGACGTG ACAACCTGCCCTACGGCGTCGTCTCGACCAGAGGCGACGTG Direct Loss 0.993432319873462 0 NA NA prediction 0.986864639746925 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80445460 chr15:80445460 nonsynonymous SNV 0.993 5 21 hm5U_associated_SNPs_416 0 0 1 0 1 FAH chr15:80445368 3'AG 80445368 Downstream 93bp
76 chr16 21415559 21415559 1 + T G LUSC 21415559 + 21415539 21415579 41 TCTTGATATTATCATCTGCCTGAGGGTGGAGCTGAGGGTGG TCTTGATATTATCATCTGCCGGAGGGTGGAGCTGAGGGTGG Direct Loss 0.9932609682058 0 NA NA prediction 0.9865219364116 Functional Loss - NPIPB3 ENSG00000169246 splicing Human protein_coding chr16:21415559 chr16:21415559 . . 0 21 hm5U_associated_SNPs_424 0 0 0 0 1 NPIPB3 chr16:21415605 5'GT 21415605 Upstream 47bp
77 chr15 22546816 22546816 1 + T C rs11634421 22546816 + 22546796 22546836 41 GGCGGCGGGGGCCACCTGCCTGGCCTGCCACAAGGTGCGTG GGCGGCGGGGGCCACCTGCCCGGCCTGCCACAAGGTGCGTG Direct Loss 0.993207230663074 0 NA NA prediction 0.986414461326148 Functional Loss - REREP3 ENSG00000259098 downstream Human processed_pseudogene chr15:22546816 chr15:22546816 . . 0 21 hm5U_associated_SNPs_427 0 0 0 0 1 REREP3 chr15:22546829 5'GT 22546829 Upstream 14bp
78 chr17 46628451 46628451 1 + T A LUAD 46628451 + 46628431 46628471 41 CGCCGCCGACCCCGGGGGGCTCTTGTCCCCTCCCCCGCCGC CGCCGCCGACCCCGGGGGGCACTTGTCCCCTCCCCCGCCGC Direct Loss 0.993157669973036 0 NA NA prediction 0.986315339946071 Functional Loss - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628451 chr17:46628451 nonsynonymous SNV 1.000 3 21 hm5U_associated_SNPs_432 0 0 1 0 1 HOXB3 chr17:46628386 3'AG 46628386 Downstream 66bp
79 chr5 117618342 117618342 1 + T C rs535832492 117618342 + 117618322 117618362 41 CCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCCCG CCCCGCCGCCCTGTCTGGGACGTGAGGAGCGCCTCTGCCCG Direct Loss 0.992933565370435 0 NA NA prediction 0.98586713074087 Functional Loss - LINC02148 ENSG00000250427 ncRNA_exonic Human lincRNA chr5:117618342 chr5:117618342 . . 0 21 hm5U_associated_SNPs_448 0 0 0 0 1 LINC02148 chr5:117618422 5'GT 117618422 Upstream 81bp
80 chr19 28296516 28296516 1 + T C rs4638713 28296516 + 28296496 28296536 41 CATTTGTGCACCTCCAGGTCTCGCATCTGGGGCTCGATCTC CATTTGTGCACCTCCAGGTCCCGCATCTGGGGCTCGATCTC Direct Loss 0.992787803020659 0 NA NA prediction 0.985575606041317 Functional Loss - LOC101927151 ENSG00000267323;ENSG00000267575 ncRNA_exonic Human other chr19:28296516 chr19:28296516 . . 0 21 hm5U_associated_SNPs_465 0 0 0 0 1 LOC101927151 chr19:28296513 3'AG 28296513 Downstream 4bp
81 chr8 9046899 9046899 1 + T A rs1965929 9046899 + 9046879 9046919 41 TTAGCCAGGATGGTCTCGATTTCCTGACCTCGTCATCCTCC TTAGCCAGGATGGTCTCGATATCCTGACCTCGTCATCCTCC Direct Loss 0.992494448732933 0 NA NA prediction 0.984988897465866 Functional Loss - LOC101929128 ENSG00000248538 ncRNA_exonic Human lincRNA chr8:9046899 chr8:9046899 . . 0 21 hm5U_associated_SNPs_485 0 0 0 0 1 LOC101929128 chr8:9046858 3'AG 9046858 Downstream 42bp
82 chr15 102294669 102294669 1 + T A rs611474 102294669 + 102294649 102294689 41 GCTGTCCAACCTGCACTCGCTTGGGAACAAGAAGACACTCG GCTGTCCAACCTGCACTCGCATGGGAACAAGAAGACACTCG Direct Loss 0.992382876381687 0 NA NA prediction 0.984765752763374 Functional Loss - LOC100128108;OR4F6 ENSG00000259660 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102294669 chr15:102294669 . . 0 21 hm5U_associated_SNPs_493 0 0 0 0 1 LOC100128108;OR4F6 chr15:102294598 3'AG 102294598 Downstream 72bp
83 chr15 22546739 22546739 1 + T C LIHC 22546739 + 22546719 22546759 41 CCAACCACCGCGCCTTCAGCTTCCACCAGAAGCAGGTGCTG CCAACCACCGCGCCTTCAGCCTCCACCAGAAGCAGGTGCTG Direct Loss 0.99234350093628 0 NA NA prediction 0.984687001872559 Functional Loss - REREP3 ENSG00000259098 ncRNA_exonic Human processed_pseudogene chr15:22546739 chr15:22546739 . . 0 21 hm5U_associated_SNPs_498 0 0 0 0 1 REREP3 chr15:22546829 5'GT 22546829 Upstream 91bp
84 chr21 43857639 43857639 1 + T C rs575260812 43857639 + 43857619 43857659 41 GTATCAGAATCAGCTCTGTGTTTGCCTCCCCAGCCCTCCGC GTATCAGAATCAGCTCTGTGCTTGCCTCCCCAGCCCTCCGC Direct Loss 0.992300221892704 0 NA NA prediction 0.984600443785408 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43857639 chr21:43857639 nonsynonymous SNV 0.314 1 21 hm5U_associated_SNPs_500 0 0 0 0 3 UBASH3A chr21:43857598 3'AG 43857598 Downstream 42bp
85 chr21 43857639 43857639 1 + T C rs575260812 43857639 + 43857619 43857659 41 GTATCAGAATCAGCTCTGTGTTTGCCTCCCCAGCCCTCCGC GTATCAGAATCAGCTCTGTGCTTGCCTCCCCAGCCCTCCGC Direct Loss 0.992300221892704 0 NA NA prediction 0.984600443785408 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43857639 chr21:43857639 nonsynonymous SNV 0.314 1 21 hm5U_associated_SNPs_500 0 0 0 0 3 UBASH3A chr21:43857690 5'GT 43857690 Upstream 52bp
86 chr21 43857639 43857639 1 + T C rs575260812 43857639 + 43857619 43857659 41 GTATCAGAATCAGCTCTGTGTTTGCCTCCCCAGCCCTCCGC GTATCAGAATCAGCTCTGTGCTTGCCTCCCCAGCCCTCCGC Direct Loss 0.992300221892704 0 NA NA prediction 0.984600443785408 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43857639 chr21:43857639 nonsynonymous SNV 0.314 1 21 hm5U_associated_SNPs_500 0 0 0 0 3 UBASH3A chr21:43857706 5'GT 43857706 Upstream 68bp
87 chr15 68118328 68118328 1 + T C SKCM 68118328 + 68118308 68118348 41 GGGCCGGGGCGCGAGGGCAGTTCCTCGCCCAACTCCAAGCA GGGCCGGGGCGCGAGGGCAGCTCCTCGCCCAACTCCAAGCA Direct Loss 0.992171551898116 0 NA NA prediction 0.984343103796231 Functional Loss - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68118328 chr15:68118328 synonymous SNV . 0 21 hm5U_associated_SNPs_513 0 0 0 0 1 SKOR1 chr15:68118274 3'AG 68118274 Downstream 55bp
88 chr5 72794334 72794334 1 + T C rs541360504 72794334 + 72794314 72794354 41 GGTGGTCCACCCGAGACCCCTTGAGCACCAACCCTAGTCCC GGTGGTCCACCCGAGACCCCCTGAGCACCAACCCTAGTCCC Direct Loss 0.992155099640136 0 NA NA prediction 0.984310199280272 Functional Loss - BTF3 ENSG00000145741 UTR5 Human protein_coding chr5:72794334 chr5:72794334 . . 0 21 hm5U_associated_SNPs_514 0 0 1 1 1 BTF3 chr5:72794383 5'GT 72794383 Upstream 50bp
89 chr11 63742172 63742172 1 + T C COAD 63742172 + 63742152 63742192 41 CATGTCCGTCCTGACGCCGCTGCTGCTGCGGGGCTTGACAG CATGTCCGTCCTGACGCCGCCGCTGCTGCGGGGCTTGACAG Direct Loss 0.992149531218618 0 NA NA prediction 0.984299062437237 Functional Loss - COX8A ENSG00000176340;ENSG00000256100 CDS Human other chr11:63742172 chr11:63742172 nonsynonymous SNV 0.821 1 21 hm5U_associated_SNPs_515 0 0 1 0 1 COX8A chr11:63742266 5'GT 63742266 Upstream 95bp
90 chr4 120325135 120325135 1 + T C rs35265692 120325135 + 120325115 120325155 41 GCCCTGGACCAGTGCTGGCCTTGATCATGCAGCTCTTCCAG GCCCTGGACCAGTGCTGGCCCTGATCATGCAGCTCTTCCAG Direct Loss 0.99212301612096 0 NA NA prediction 0.984246032241919 Functional Loss - FABP2;LINC01061 ENSG00000249244;ENSG00000260091 intergenic Human other chr4:120325135 chr4:120325135 . . 0 21 hm5U_associated_SNPs_517 0 0 0 0 1 FABP2;LINC01061 chr4:120325048 3'AG 120325048 Downstream 88bp
91 chr7 121944307 121944307 1 + T C HNSC 121944307 + 121944287 121944327 41 AGTTGAGATGCAGAGAGTGCTTGGGTTCCCCCTTGGGTAAG AGTTGAGATGCAGAGAGTGCCTGGGTTCCCCCTTGGGTAAG Direct Loss 0.992115556026135 0 NA NA prediction 0.984231112052271 Functional Loss - FEZF1 ENSG00000128610 CDS Human protein_coding chr7:121944307 chr7:121944307 nonsynonymous SNV 1.000 2 21 hm5U_associated_SNPs_518 0 0 0 0 1 FEZF1 chr7:121944322 5'GT 121944322 Upstream 16bp
92 chr17 20747365 20747365 1 + T A rs113736734 20747365 + 20747345 20747385 41 GCAGCATCGAGAAGGTGTCCTAGATCACGTCGCCCGTGCTC GCAGCATCGAGAAGGTGTCCAAGATCACGTCGCCCGTGCTC Direct Loss 0.992093388658746 0 NA NA prediction 0.984186777317491 Functional Loss - LOC100287072;CCDC144NL ENSG00000226981 ncRNA_exonic Human unprocessed_pseudogene chr17:20747365 chr17:20747365 . . 0 21 hm5U_associated_SNPs_519 0 0 0 0 1 LOC100287072;CCDC144NL chr17:20747349 3'AG 20747349 Downstream 17bp
93 chr4 183065260 183065260 1 + T C rs72693842 183065260 + 183065240 183065280 41 TATAAATGATCACAGCCAGGTCCAGCTCGCCCCGTGATTGG TATAAATGATCACAGCCAGGCCCAGCTCGCCCCGTGATTGG Direct Loss 0.992063568283671 0 NA NA prediction 0.984127136567341 Functional Loss - LOC90768 ENSG00000177822 ncRNA_exonic Human antisense chr4:183065260 chr4:183065260 . . 0 21 hm5U_associated_SNPs_520 0 0 1 0 1 LOC90768 chr4:183065314 5'GT 183065314 Upstream 55bp
94 chr3 28617801 28617801 1 + T C ESCA 28617801 + 28617781 28617821 41 ATGGATGTTGAGGGAGTTTCTCCGCGCCCGGAGCCCATCCC ATGGATGTTGAGGGAGTTTCCCCGCGCCCGGAGCCCATCCC Direct Loss 0.991951421996894 0 NA NA prediction 0.983902843993788 Functional Loss - LINC00693 ENSG00000228214 ncRNA_exonic Human other chr3:28617801 chr3:28617801 . . 0 21 hm5U_associated_SNPs_529 0 0 0 0 1 LINC00693 chr3:28617764 3'AG 28617764 Downstream 38bp
95 chr17 18332344 18332344 1 + T G UCEC 18332344 + 18332324 18332364 41 GCCGACCCGGAGATGCACATTGAGAACCTCAAGGAGGAGCT GCCGACCCGGAGATGCACATGGAGAACCTCAAGGAGGAGCT Direct Loss 0.991768232165983 0 NA NA prediction 0.983536464331966 Functional Loss - KRT17P2 ENSG00000186831 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:18332344 chr17:18332344 . . 0 21 hm5U_associated_SNPs_545 0 0 0 0 1 KRT17P2 chr17:18332389 5'GT 18332389 Upstream 46bp
96 chr7 64646843 64646843 1 + T G rs545499263 64646843 + 64646823 64646863 41 AGCATTGTTCTCAGGCACTATGCCTACCTCCGAGACAGTCT AGCATTGTTCTCAGGCACTAGGCCTACCTCCGAGACAGTCT Direct Loss 0.991751435593361 0 NA NA prediction 0.983502871186722 Functional Loss - INTS4P1 ENSG00000164669 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64646843 chr7:64646843 . . 0 21 hm5U_associated_SNPs_546 0 0 0 9 1 INTS4P1 chr7:64646768 3'AG 64646768 Downstream 76bp
97 chr12 132636300 132636300 1 + T C COAD 132636300 + 132636280 132636320 41 TAGAGTTGGACGCCGACCCCTACGACCCTGGAGAGGAGGAC TAGAGTTGGACGCCGACCCCCACGACCCTGGAGAGGAGGAC Direct Loss 0.99169490921458 0 NA NA prediction 0.98338981842916 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132636300 chr12:132636300 nonsynonymous SNV 0.037 4 21 hm5U_associated_SNPs_552 0 0 1 0 1 NOC4L chr12:132636365 5'GT 132636365 Upstream 66bp
98 chr1 26496651 26496651 1 + T C rs7087 26496651 + 26496631 26496671 41 CCCGACCTGCCAGGGGGCGGTCTGCACCGCTGTCTGGCCTG CCCGACCTGCCAGGGGGCGGCCTGCACCGCTGTCTGGCCTG Direct Loss 0.991494411266269 0 NA NA prediction 0.982988822532538 Functional Loss - ZNF593 ENSG00000142684 CDS Human protein_coding chr1:26496651 chr1:26496651 synonymous SNV . 0 21 hm5U_associated_SNPs_566 0 0 1 0 1 ZNF593 chr1:26496674 5'GT 26496674 Upstream 24bp
99 chr7 77620262 77620262 1 + T C rs144982512 77620262 + 77620242 77620282 41 GTCTGCTTCCTTCAAGAGGGTCTGTGGGTCCTCTCGGCATT GTCTGCTTCCTTCAAGAGGGCCTGTGGGTCCTCTCGGCATT Direct Loss 0.991420841426372 0 NA NA prediction 0.982841682852743 Functional Loss - PHTF2;MAGI2 ENSG00000232756 ncRNA_exonic Human antisense chr7:77620262 chr7:77620262 . . 0 21 hm5U_associated_SNPs_572 0 0 0 0 1 PHTF2;MAGI2 chr7:77620237 3'AG 77620237 Downstream 26bp
100 chr7 79082460 79082460 1 + T G LIHC 79082460 + 79082440 79082480 41 AGCAGCTCCTCCGACACCAATTTGCTGCCGCTCTCATAGGC AGCAGCTCCTCCGACACCAAGTTGCTGCCGCTCTCATAGGC Direct Loss 0.991409569326784 0 NA NA prediction 0.982819138653568 Functional Loss - MAGI2 ENSG00000187391 CDS Human protein_coding chr7:79082460 chr7:79082460 nonsynonymous SNV 0.997 2 21 hm5U_associated_SNPs_574 0 0 0 0 1 MAGI2 chr7:79082507 5'GT 79082507 Upstream 48bp
101 chr3 147657837 147657837 1 + T A CESC 147657837 + 147657817 147657857 41 CAGCGTCGCTGAGCACCAACTTCTATTCCACGGAGGCAGAC CAGCGTCGCTGAGCACCAACATCTATTCCACGGAGGCAGAC Direct Loss 0.991370616075046 0 NA NA prediction 0.982741232150092 Functional Loss - LOC440982;LINC02032 ENSG00000239922 ncRNA_exonic Human lincRNA chr3:147657837 chr3:147657837 . . 0 21 hm5U_associated_SNPs_577 0 0 0 0 1 LOC440982;LINC02032 chr3:147657903 5'GT 147657903 Upstream 67bp
102 chr7 65225415 65225415 1 + T C COAD 65225415 + 65225395 65225435 41 TTCCCCCATCCAACAGGCTGTGTGGTTCCGGTGCTGGTGCC TTCCCCCATCCAACAGGCTGCGTGGTTCCGGTGCTGGTGCC Direct Loss 0.991328405291738 0 NA NA prediction 0.982656810583476 Functional Loss - CCT6P1 ENSG00000228409 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:65225415 chr7:65225415 . . 0 21 hm5U_associated_SNPs_580 0 0 1 0 1 CCT6P1 chr7:65225411 3'AG 65225411 Downstream 5bp
103 chr5 3599410 3599410 1 + T C ESCA 3599410 + 3599390 3599430 41 GCAGCCCACACGGCGCCGGCTTATTACCCCTACGGCCAGTT GCAGCCCACACGGCGCCGGCCTATTACCCCTACGGCCAGTT Direct Loss 0.991247662649059 0 NA NA prediction 0.982495325298117 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3599410 chr5:3599410 synonymous SNV . 0 21 hm5U_associated_SNPs_584 0 0 0 0 1 IRX1 chr5:3599339 3'AG 3599339 Downstream 72bp
104 chr2 234737666 234737666 1 + T C UCEC 234737666 + 234737646 234737686 41 TGAGCTCCGGGAAGGGGATGTGGGGTCCTCTTTCGACGCCA TGAGCTCCGGGAAGGGGATGCGGGGTCCTCTTTCGACGCCA Direct Loss 0.990949668648898 0 NA NA prediction 0.981899337297796 Functional Loss - MROH2A ENSG00000185038 CDS Human protein_coding chr2:234737666 chr2:234737666 nonsynonymous SNV 0.007 0 21 hm5U_associated_SNPs_600 0 0 0 0 1 MROH2A chr2:234737718 5'GT 234737718 Upstream 53bp
105 chr9 66553727 66553727 1 + T A rs4115506 66553727 + 66553707 66553747 41 GGACCCGAATCCACCCATTGTCCGTTTTCCGCTGCCGCTGG GGACCCGAATCCACCCATTGACCGTTTTCCGCTGCCGCTGG Direct Loss 0.990748452709748 0 NA NA prediction 0.981496905419496 Functional Loss - LOC403323;LOC728673 ENSG00000170161;ENSG00000234665 ncRNA_exonic Human other chr9:66553727 chr9:66553727 . . 0 21 hm5U_associated_SNPs_608 0 0 0 0 2 LOC403323 chr9:66553674 3'AG 66553674 Downstream 54bp
106 chr9 66553727 66553727 1 + T A rs4115506 66553727 + 66553707 66553747 41 GGACCCGAATCCACCCATTGTCCGTTTTCCGCTGCCGCTGG GGACCCGAATCCACCCATTGACCGTTTTCCGCTGCCGCTGG Direct Loss 0.990748452709748 0 NA NA prediction 0.981496905419496 Functional Loss - LOC403323;LOC728673 ENSG00000170161;ENSG00000234665 ncRNA_exonic Human other chr9:66553727 chr9:66553727 . . 0 21 hm5U_associated_SNPs_608 0 0 0 0 2 LOC403323;LOC728673 chr9:66553803 5'GT 66553803 Upstream 77bp
107 chr1 200898139 200898139 1 + T C rs12145340 200898139 + 200898119 200898159 41 CTGCAACCACGAGATCAGCATAGAGGCATCAGAGGCGTTGC CTGCAACCACGAGATCAGCACAGAGGCATCAGAGGCGTTGC Direct Loss 0.990585604624449 0 NA NA prediction 0.981171209248898 Functional Loss - MROH3P ENSG00000233217 ncRNA_exonic Human transcribed_unitary_pseudogene chr1:200898139 chr1:200898139 . . 0 21 hm5U_associated_SNPs_618 0 0 0 0 1 MROH3P chr1:200898192 5'GT 200898192 Upstream 54bp
108 chrX 153677261 153677261 1 + T G UCEC 153677261 + 153677241 153677281 41 GTGAGGAGATCGAGATCACCTTCAGCTACTGGGATGGCTCT GTGAGGAGATCGAGATCACCGTCAGCTACTGGGATGGCTCT Direct Loss 0.990512682142709 0 NA NA prediction 0.981025364285418 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153677261 chrX:153677261 nonsynonymous SNV 1.000 4 21 hm5U_associated_SNPs_621 0 0 1 0 2 FAM50A chrX:153677241 3'AG 153677241 Downstream 21bp
109 chrX 153677261 153677261 1 + T G UCEC 153677261 + 153677241 153677281 41 GTGAGGAGATCGAGATCACCTTCAGCTACTGGGATGGCTCT GTGAGGAGATCGAGATCACCGTCAGCTACTGGGATGGCTCT Direct Loss 0.990512682142709 0 NA NA prediction 0.981025364285418 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153677261 chrX:153677261 nonsynonymous SNV 1.000 4 21 hm5U_associated_SNPs_621 0 0 1 0 2 FAM50A chrX:153677302 5'GT 153677302 Upstream 42bp
110 chr14 41424077 41424077 1 + T C rs528697864 41424077 + 41424057 41424097 41 TGCAGAAATCACCCGTCTTCTGCGTCGCTCACGGTGGGAGC TGCAGAAATCACCCGTCTTCCGCGTCGCTCACGGTGGGAGC Direct Loss 0.990455964413254 0 NA NA prediction 0.980911928826508 Functional Loss - LINC02315 ENSG00000251363 upstream Human lincRNA chr14:41424077 chr14:41424077 . . 0 21 hm5U_associated_SNPs_624 0 0 0 0 1 LINC02315 chr14:41424157 5'GT 41424157 Upstream 81bp
111 chr19 9959799 9959799 1 + T C CESC 9959799 + 9959779 9959819 41 GCCATTTGAAGACGCCTCGTTTGCGCTGCGGACGGGGGAGA GCCATTTGAAGACGCCTCGTCTGCGCTGCGGACGGGGGAGA Direct Loss 0.990429545027934 0 NA NA prediction 0.980859090055868 Functional Loss - PIN1 ENSG00000127445 CDS Human protein_coding chr19:9959799 chr19:9959799 nonsynonymous SNV 0.534 4 21 hm5U_associated_SNPs_626 0 0 1 0 2 PIN1 chr19:9959766 3'AG 9959766 Downstream 34bp
112 chr19 9959799 9959799 1 + T C CESC 9959799 + 9959779 9959819 41 GCCATTTGAAGACGCCTCGTTTGCGCTGCGGACGGGGGAGA GCCATTTGAAGACGCCTCGTCTGCGCTGCGGACGGGGGAGA Direct Loss 0.990429545027934 0 NA NA prediction 0.980859090055868 Functional Loss - PIN1 ENSG00000127445 CDS Human protein_coding chr19:9959799 chr19:9959799 nonsynonymous SNV 0.534 4 21 hm5U_associated_SNPs_626 0 0 1 0 2 PIN1 chr19:9959871 5'GT 9959871 Upstream 73bp
113 chrX 155253826 155253826 1 + T C rs779892608 155253826 + 155253806 155253846 41 TGGTCGACCCCTCCGGTGGCTGGGCCACTCTGCTAGAGTCC TGGTCGACCCCTCCGGTGGCCGGGCCACTCTGCTAGAGTCC Direct Loss 0.990260121309007 0 NA NA prediction 0.980520242618015 Functional Loss - WASIR1;DDX11L16 ENSG00000182484;ENSG00000270726 ncRNA_exonic Human other chrX:155253826 chrX:155253826 . . 0 21 hm5U_associated_SNPs_636 0 0 0 0 1 WASIR1;DDX11L16 chrX:155253785 3'AG 155253785 Downstream 42bp
114 chr15 25427409 25427409 1 + T A HNSC 25427409 + 25427389 25427429 41 GTCAGCGTCCATCAGCCAGGTGTCCAGCCCCTGGTGCACTG GTCAGCGTCCATCAGCCAGGAGTCCAGCCCCTGGTGCACTG Direct Loss 0.990257746847165 0 NA NA prediction 0.980515493694331 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25427409 chr15:25427409 . . 0 21 hm5U_associated_SNPs_637 0 0 0 2 2 SNHG14 chr15:25427344 3'AG 25427344 Downstream 66bp
115 chr15 25427409 25427409 1 + T A HNSC 25427409 + 25427389 25427429 41 GTCAGCGTCCATCAGCCAGGTGTCCAGCCCCTGGTGCACTG GTCAGCGTCCATCAGCCAGGAGTCCAGCCCCTGGTGCACTG Direct Loss 0.990257746847165 0 NA NA prediction 0.980515493694331 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25427409 chr15:25427409 . . 0 21 hm5U_associated_SNPs_637 0 0 0 2 2 SNHG14 chr15:25427475 5'GT 25427475 Upstream 67bp
116 chr1 119683356 119683356 1 + T G rs587679243 119683356 + 119683336 119683376 41 TCCTGCTTGCTGGGCGCGGCTTGGGCCTCCAGGCTGCGCAG TCCTGCTTGCTGGGCGCGGCGTGGGCCTCCAGGCTGCGCAG Direct Loss 0.990059823881849 0 NA NA prediction 0.980119647763699 Functional Loss - LOC101929147 ENSG00000231365 ncRNA_exonic Human antisense chr1:119683356 chr1:119683356 . . 0 21 hm5U_associated_SNPs_648 0 0 1 0 1 LOC101929147 chr1:119683416 5'GT 119683416 Upstream 61bp
117 chr17 77893318 77893318 1 + T C rs573359748 77893318 + 77893298 77893338 41 GAGGAGCGGCCCTCACCGGATGTCAAGCAGCCTGGGTCCCC GAGGAGCGGCCCTCACCGGACGTCAAGCAGCCTGGGTCCCC Direct Loss 0.990006111044359 0 NA NA prediction 0.980012222088718 Functional Loss - LINC01978;LINC01979 ENSG00000262188;ENSG00000262585 ncRNA_exonic Human other chr17:77893318 chr17:77893318 . . 0 21 hm5U_associated_SNPs_653 0 0 0 0 1 LINC01978;LINC01979 chr17:77893375 5'GT 77893375 Upstream 58bp
118 chr16 67694962 67694962 1 + T C PRAD 67694962 + 67694942 67694982 41 ATGGCCCGGCCGCAGAGGACTCCGGCGCGCAGTCCCGATAG ATGGCCCGGCCGCAGAGGACCCCGGCGCGCAGTCCCGATAG Direct Loss 0.98975643244185 0 NA NA prediction 0.979512864883701 Functional Loss - PARD6A ENSG00000102981 CDS Human protein_coding chr16:67694962 chr16:67694962 synonymous SNV . 0 21 hm5U_associated_SNPs_663 0 0 0 0 1 PARD6A chr16:67695004 5'GT 67695004 Upstream 43bp
119 chr22 51176669 51176669 1 + T C rs374561247 51176669 + 51176649 51176689 41 GGCAGTGCCAGGAGTATGGTTGAGATGCTACCAACTGCCAT GGCAGTGCCAGGAGTATGGTCGAGATGCTACCAACTGCCAT Direct Loss 0.989734416314594 0 NA NA prediction 0.979468832629189 Functional Loss - ACR ENSG00000100312 CDS Human protein_coding chr22:51176669 chr22:51176669 synonymous SNV . 0 21 hm5U_associated_SNPs_664 0 0 0 0 1 ACR chr22:51176740 5'GT 51176740 Upstream 72bp
120 chr19 7696389 7696389 1 + T C UCEC 7696389 + 7696369 7696409 41 TAGAGGAATTCAAAGAGAGGTTACGGAAGCGGCGGGAGGAG TAGAGGAATTCAAAGAGAGGCTACGGAAGCGGCGGGAGGAG Direct Loss 0.989682131394054 0 NA NA prediction 0.979364262788107 Functional Loss - PET100 ENSG00000229833 CDS Human protein_coding chr19:7696389 chr19:7696389 synonymous SNV . 0 21 hm5U_associated_SNPs_667 0 0 1 0 1 PET100 chr19:7696359 3'AG 7696359 Downstream 31bp
121 chr15 72109949 72109949 1 + T C UCEC 72109949 + 72109929 72109969 41 GTTTATCACTGCGGAACGCATCGAGCTCCTCTTTTTCCGCA GTTTATCACTGCGGAACGCACCGAGCTCCTCTTTTTCCGCA Direct Loss 0.989658669754603 0 NA NA prediction 0.979317339509207 Functional Loss - NR2E3 ENSG00000031544 ncRNA_exonic Human other chr15:72109949 chr15:72109949 . 0.945 0 21 hm5U_associated_SNPs_670 0 0 0 0 1 NR2E3 chr15:72109893 3'AG 72109893 Downstream 57bp
122 chr12 54333307 54333307 1 - A G DLBC 54333307 - 54333287 54333327 41 CTTCGACGGGGATGAGGGCGTCGTGACGCGGCTCCGGGTGC CTTCGACGGGGATGAGGGCGCCGTGACGCGGCTCCGGGTGC Direct Loss 0.989545493561135 0 NA NA prediction 0.97909098712227 Functional Loss - HOXC13 ENSG00000123364 CDS Human protein_coding chr12:54333307 chr12:54333307 nonsynonymous SNV 0.214 3 21 hm5U_associated_SNPs_679 0 0 0 0 1 HOXC13 chr12:54333255 5'GT 54333255 Upstream 53bp
123 chr22 21475919 21475919 1 - A G rs533202333 21475919 - 21475899 21475939 41 GGGAGCCCACCGGGCCCAGATAGGTACAGAGAGCAGAGGCT GGGAGCCCACCGGGCCCAGACAGGTACAGAGAGCAGAGGCT Direct Loss 0.989513010100917 0 NA NA prediction 0.979026020201834 Functional Loss - BCRP2 ENSG00000169668 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:21475919 chr22:21475919 . . 0 21 hm5U_associated_SNPs_682 0 0 0 0 1 BCRP2 chr22:21475917 5'GT 21475917 Upstream 3bp
124 chr1 233750206 233750206 1 + T C COAD 233750206 + 233750186 233750226 41 TGTCGGTGCTCAGCAACGCCTCGGGCAACTGGAACTGGGAC TGTCGGTGCTCAGCAACGCCCCGGGCAACTGGAACTGGGAC Direct Loss 0.989287991528102 0 NA NA prediction 0.978575983056205 Functional Loss - KCNK1 ENSG00000135750 CDS Human protein_coding chr1:233750206 chr1:233750206 nonsynonymous SNV 0.994 4 21 hm5U_associated_SNPs_698 0 0 1 0 1 KCNK1 chr1:233750272 5'GT 233750272 Upstream 67bp
125 chr17 51901084 51901084 1 - A G rs3803825 51901084 - 51901064 51901104 41 GTGATGATATCCAGGTCCTTTAAGGTTGTCTCTCGCTGGTT GTGATGATATCCAGGTCCTTCAAGGTTGTCTCTCGCTGGTT Direct Loss 0.989280721726457 0 NA NA prediction 0.978561443452913 Functional Loss - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51901084 chr17:51901084 synonymous SNV . 0 21 hm5U_associated_SNPs_699 0 1 0 0 1 KIF2B chr17:51901090 3'AG 51901090 Downstream 7bp
126 chr1 202976930 202976930 1 + T C STAD 202976930 + 202976910 202976950 41 GCGGATTACGCCAACTCGGATCCGGCGGTCGTGAGGTCTGG GCGGATTACGCCAACTCGGACCCGGCGGTCGTGAGGTCTGG Direct Loss 0.989279472241128 0 NA NA prediction 0.978558944482256 Functional Loss - TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202976930 chr1:202976930 synonymous SNV . 0 21 hm5U_associated_SNPs_700 0 0 1 0 2 TMEM183A;TMEM183B chr1:202976902 3'AG 202976902 Downstream 29bp
127 chr1 202976930 202976930 1 + T C STAD 202976930 + 202976910 202976950 41 GCGGATTACGCCAACTCGGATCCGGCGGTCGTGAGGTCTGG GCGGATTACGCCAACTCGGACCCGGCGGTCGTGAGGTCTGG Direct Loss 0.989279472241128 0 NA NA prediction 0.978558944482256 Functional Loss - TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202976930 chr1:202976930 synonymous SNV . 0 21 hm5U_associated_SNPs_700 0 0 1 0 2 TMEM183A;TMEM183B chr1:202976991 5'GT 202976991 Upstream 62bp
128 chr11 65293661 65293661 1 + T C SKCM 65293661 + 65293641 65293681 41 ATGTCTGCATGGCCGCCGTGTTCGTGGACCGAGCTGGCGAG ATGTCTGCATGGCCGCCGTGCTCGTGGACCGAGCTGGCGAG Direct Loss 0.98925088375419 0 NA NA prediction 0.97850176750838 Functional Loss - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65293661 chr11:65293661 nonsynonymous SNV 0.999 2 21 hm5U_associated_SNPs_702 0 0 1 0 1 SCYL1 chr11:65293595 3'AG 65293595 Downstream 67bp
129 chr11 2415372 2415372 1 + T G SKCM 2415372 + 2415352 2415392 41 CTGTCATGATGTTCGTTGGCTTCCTGGGCTGCTACGGGGCC CTGTCATGATGTTCGTTGGCGTCCTGGGCTGCTACGGGGCC Direct Loss 0.989213132620962 0 NA NA prediction 0.978426265241924 Functional Loss - CD81 ENSG00000110651 CDS Human protein_coding chr11:2415372 chr11:2415372 nonsynonymous SNV 0.977 4 21 hm5U_associated_SNPs_704 0 0 1 0 2 CD81 chr11:2415325 3'AG 2415325 Downstream 48bp
130 chr11 2415372 2415372 1 + T G SKCM 2415372 + 2415352 2415392 41 CTGTCATGATGTTCGTTGGCTTCCTGGGCTGCTACGGGGCC CTGTCATGATGTTCGTTGGCGTCCTGGGCTGCTACGGGGCC Direct Loss 0.989213132620962 0 NA NA prediction 0.978426265241924 Functional Loss - CD81 ENSG00000110651 CDS Human protein_coding chr11:2415372 chr11:2415372 nonsynonymous SNV 0.977 4 21 hm5U_associated_SNPs_704 0 0 1 0 2 CD81 chr11:2415422 5'GT 2415422 Upstream 51bp
131 chr19 5857720 5857720 1 + T G rs114662403 5857720 + 5857700 5857740 41 GTCTGGGCTTCCTGGAGGTTTGAGCTGGGAGCTGAAGCCCC GTCTGGGCTTCCTGGAGGTTGGAGCTGGGAGCTGAAGCCCC Direct Loss 0.989211291959171 0 NA NA prediction 0.978422583918342 Functional Loss - LOC101928844 ENSG00000267709 ncRNA_exonic Human antisense chr19:5857720 chr19:5857720 . . 0 21 hm5U_associated_SNPs_705 0 0 0 0 1 LOC101928844 chr19:5857627 3'AG 5857627 Downstream 94bp
132 chr2 233388824 233388824 1 + T C rs566840716 233388824 + 233388804 233388844 41 GCTCGGGCCTCGTCCGGGACTGCGGCGCCTGGCCCCCGCCC GCTCGGGCCTCGTCCGGGACCGCGGCGCCTGGCCCCCGCCC Direct Loss 0.98907779345779 0 NA NA prediction 0.978155586915579 Functional Loss - PRSS56 ENSG00000237412 CDS Human protein_coding chr2:233388824 chr2:233388824 nonsynonymous SNV 0.090 0 21 hm5U_associated_SNPs_716 0 0 0 0 2 PRSS56 chr2:233388749 3'AG 233388749 Downstream 76bp
133 chr2 233388824 233388824 1 + T C rs566840716 233388824 + 233388804 233388844 41 GCTCGGGCCTCGTCCGGGACTGCGGCGCCTGGCCCCCGCCC GCTCGGGCCTCGTCCGGGACCGCGGCGCCTGGCCCCCGCCC Direct Loss 0.98907779345779 0 NA NA prediction 0.978155586915579 Functional Loss - PRSS56 ENSG00000237412 CDS Human protein_coding chr2:233388824 chr2:233388824 nonsynonymous SNV 0.090 0 21 hm5U_associated_SNPs_716 0 0 0 0 2 PRSS56 chr2:233388913 5'GT 233388913 Upstream 90bp
134 chr3 131081041 131081041 1 + T C rs560605658 131081041 + 131081021 131081061 41 GATGCGCTTTGATGGGCGCCTGGGCTTCCCTGGCGGATTCG GATGCGCTTTGATGGGCGCCCGGGCTTCCCTGGCGGATTCG Direct Loss 0.98894558787099 0 NA NA prediction 0.977891175741979 Functional Loss - NUDT16P1 ENSG00000246082 ncRNA_exonic Human transcribed_unitary_pseudogene chr3:131081041 chr3:131081041 . . 0 21 hm5U_associated_SNPs_723 0 0 0 0 1 NUDT16P1 chr3:131081016 3'AG 131081016 Downstream 26bp
135 chr20 44420682 44420682 1 + T C rs2664591 44420682 + 44420662 44420702 41 GCCGAGCAGCCGCGGGGACCTAGCGGGGCCGAGAGGGGCGG GCCGAGCAGCCGCGGGGACCCAGCGGGGCCGAGAGGGGCGG Direct Loss 0.988893128844001 0 NA NA prediction 0.977786257688003 Functional Loss - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44420682 chr20:44420682 synonymous SNV . 0 21 hm5U_associated_SNPs_727 0 0 1 0 1 DNTTIP1 chr20:44420748 5'GT 44420748 Upstream 67bp
136 chr19 18047283 18047283 1 + T G rs4808722 18047283 + 18047263 18047303 41 TCGGCAGCGGCCCGGGCACGTAGGGCAGAGGCCAAGGCGGC TCGGCAGCGGCCCGGGCACGGAGGGCAGAGGCCAAGGCGGC Direct Loss 0.988879199494867 0 NA NA prediction 0.977758398989733 Functional Loss - CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18047283 chr19:18047283 synonymous SNV . 0 21 hm5U_associated_SNPs_729 0 0 1 0 1 CCDC124 chr19:18047219 3'AG 18047219 Downstream 65bp
137 chr1 157895823 157895823 1 + T C rs183630895 157895823 + 157895803 157895843 41 GCGCAGTGAGGTGGTGGCACTCACGGTCACAGGTGGGACAT GCGCAGTGAGGTGGTGGCACCCACGGTCACAGGTGGGACAT Direct Loss 0.988878390920007 0 NA NA prediction 0.977756781840013 Functional Loss - LOC105371458 ENSG00000236957 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:157895823 chr1:157895823 . . 0 21 hm5U_associated_SNPs_730 0 0 0 0 1 LOC105371458 chr1:157895834 5'GT 157895834 Upstream 12bp
138 chr4 1283732 1283732 1 + T C KIRC 1283732 + 1283712 1283752 41 AGGAGTCGGCGGCTCAGTTGTCCATGACCCTGAAGGTCCAG AGGAGTCGGCGGCTCAGTTGCCCATGACCCTGAAGGTCCAG Direct Loss 0.988862968415499 0 NA NA prediction 0.977725936830997 Functional Loss - MAEA ENSG00000090316 CDS Human protein_coding chr4:1283732 chr4:1283732 nonsynonymous SNV 0.983 1 21 hm5U_associated_SNPs_731 0 0 1 0 1 MAEA chr4:1283770 5'GT 1283770 Upstream 39bp
139 chr7 123668693 123668693 1 + T A rs535008396 123668693 + 123668673 123668713 41 AGTGATTCTCCTGCCTTGGGTTCCCAAAGCGTTGGGACGGC AGTGATTCTCCTGCCTTGGGATCCCAAAGCGTTGGGACGGC Direct Loss 0.988780594221213 0 NA NA prediction 0.977561188442426 Functional Loss - LOC105375483 ENSG00000241345 downstream Human antisense chr7:123668693 chr7:123668693 . . 0 21 hm5U_associated_SNPs_737 0 0 0 0 1 LOC105375483 chr7:123668624 3'AG 123668624 Downstream 70bp
140 chr10 87403907 87403907 1 + T C rs189190366 87403907 + 87403887 87403927 41 GTGAGGAGCCCAGCACTGCCTTGCTTGGTCTGGACTTACGC GTGAGGAGCCCAGCACTGCCCTGCTTGGTCTGGACTTACGC Direct Loss 0.988540113355423 0 NA NA prediction 0.977080226710846 Functional Loss - GRID1 ENSG00000270002 ncRNA_exonic Human antisense chr10:87403907 chr10:87403907 . . 0 21 hm5U_associated_SNPs_750 0 0 0 0 1 GRID1 chr10:87403945 5'GT 87403945 Upstream 39bp
141 chr16 67262712 67262712 1 + T C UCEC 67262712 + 67262692 67262732 41 ATCCACAGGCACCTTAAGGATGTGATCCTACTGACAGCCAT ATCCACAGGCACCTTAAGGACGTGATCCTACTGACAGCCAT Direct Loss 0.988445936481029 0 NA NA prediction 0.976891872962058 Functional Loss - TMEM208 ENSG00000168701 CDS Human protein_coding chr16:67262712 chr16:67262712 synonymous SNV . 0 21 hm5U_associated_SNPs_754 0 0 1 0 2 TMEM208 chr16:67262700 3'AG 67262700 Downstream 13bp
142 chr16 67262712 67262712 1 + T C UCEC 67262712 + 67262692 67262732 41 ATCCACAGGCACCTTAAGGATGTGATCCTACTGACAGCCAT ATCCACAGGCACCTTAAGGACGTGATCCTACTGACAGCCAT Direct Loss 0.988445936481029 0 NA NA prediction 0.976891872962058 Functional Loss - TMEM208 ENSG00000168701 CDS Human protein_coding chr16:67262712 chr16:67262712 synonymous SNV . 0 21 hm5U_associated_SNPs_754 0 0 1 0 2 TMEM208 chr16:67262784 5'GT 67262784 Upstream 73bp
143 chr4 147560567 147560567 1 + T A HNSC 147560567 + 147560547 147560587 41 GGCTATGCGGAGAGCCTGTCTTCCAACCCCACCGGTGCGTA GGCTATGCGGAGAGCCTGTCATCCAACCCCACCGGTGCGTA Direct Loss 0.988390430064636 0 NA NA prediction 0.976780860129271 Functional Loss - POU4F2 ENSG00000151615 CDS Human protein_coding chr4:147560567 chr4:147560567 nonsynonymous SNV 1.000 4 21 hm5U_associated_SNPs_758 0 0 0 0 1 POU4F2 chr4:147560580 5'GT 147560580 Upstream 14bp
144 chr16 56678669 56678669 1 + T A LUSC 56678669 + 56678649 56678689 41 GTGCCAAATGTGCCCAGGGCTGCACCTGAAAAGGGGCATTG GTGCCAAATGTGCCCAGGGCAGCACCTGAAAAGGGGCATTG Direct Loss 0.988315719731733 0 NA NA prediction 0.976631439463466 Functional Loss - MT1DP ENSG00000205361 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:56678669 chr16:56678669 . . 0 21 hm5U_associated_SNPs_764 0 0 0 1 1 MT1DP chr16:56678622 3'AG 56678622 Downstream 48bp
145 chr18 9475619 9475619 1 + T C rs546958146 9475619 + 9475599 9475639 41 CAGGAGGCGGCTCCGGTGGCTGCGGCGGCAGCGTGAGCGCG CAGGAGGCGGCTCCGGTGGCCGCGGCGGCAGCGTGAGCGCG Direct Loss 0.988162534332753 0 NA NA prediction 0.976325068665505 Functional Loss - RALBP1 ENSG00000017797 intronic Human protein_coding chr18:9475619 chr18:9475619 . . 0 21 hm5U_associated_SNPs_773 0 0 1 0 1 RALBP1 chr18:9475689 5'GT 9475689 Upstream 71bp
146 chr5 159895408 159895408 1 + T C rs546578379 159895408 + 159895388 159895428 41 GGGGGAGAACAGCGGCTGAATTGGAAATGATAAAATAAAAT GGGGGAGAACAGCGGCTGAACTGGAAATGATAAAATAAAAT Direct Loss 0.988088943298286 0 NA NA prediction 0.976177886596571 Functional Loss - MIR3142HG ENSG00000253522 ncRNA_exonic Human lincRNA chr5:159895408 chr5:159895408 . . 0 21 hm5U_associated_SNPs_776 0 0 0 0 1 MIR3142HG chr5:159895447 5'GT 159895447 Upstream 40bp
147 chr8 145583036 145583036 1 - A G COAD 145583036 - 145583016 145583056 41 GTAGCTCCACCCAGATCCCATTGACCGCAGCCCAGGAGCCC GTAGCTCCACCCAGATCCCACTGACCGCAGCCCAGGAGCCC Direct Loss 0.988074243641254 0 NA NA prediction 0.976148487282509 Functional Loss - SLC52A2 ENSG00000185803 CDS Human protein_coding chr8:145583036 chr8:145583036 nonsynonymous SNV 0.971 4 21 hm5U_associated_SNPs_778 0 0 0 0 1 SLC52A2 chr8:145582993 5'GT 145582993 Upstream 44bp
148 chr7 16685835 16685835 1 + T C rs114469613 16685835 + 16685815 16685855 41 TTGTCTGCCGCCACTGCTGCTGCTGCTGCTGCTGCCGCTGC TTGTCTGCCGCCACTGCTGCCGCTGCTGCTGCTGCCGCTGC Direct Loss 0.98797469143501 0 NA NA prediction 0.97594938287002 Functional Loss - BZW2 ENSG00000136261 UTR5 Human protein_coding chr7:16685835 chr7:16685835 . . 0 21 hm5U_associated_SNPs_785 0 0 1 0 2 BZW2 chr7:16685913 5'GT 16685913 Upstream 79bp
149 chr7 16685835 16685835 1 + T C rs114469613 16685835 + 16685815 16685855 41 TTGTCTGCCGCCACTGCTGCTGCTGCTGCTGCTGCCGCTGC TTGTCTGCCGCCACTGCTGCCGCTGCTGCTGCTGCCGCTGC Direct Loss 0.98797469143501 0 NA NA prediction 0.97594938287002 Functional Loss - BZW2 ENSG00000136261 UTR5 Human protein_coding chr7:16685835 chr7:16685835 . . 0 21 hm5U_associated_SNPs_785 0 0 1 0 2 BZW2 chr7:16685929 5'GT 16685929 Upstream 95bp
150 chr6 43613007 43613007 1 + T C KIRC 43613007 + 43612987 43613027 41 TTGGCCTCGTCGCCGATTACTACATCGCGCAGGGCCTGAGT TTGGCCTCGTCGCCGATTACCACATCGCGCAGGGCCTGAGT Direct Loss 0.987962130861211 0 NA NA prediction 0.975924261722422 Functional Loss - RSPH9 ENSG00000172426 CDS Human protein_coding chr6:43613007 chr6:43613007 nonsynonymous SNV 0.963 1 21 hm5U_associated_SNPs_788 0 0 0 0 1 RSPH9 chr6:43613062 5'GT 43613062 Upstream 56bp
151 chr10 97775996 97775996 1 + T C LUSC 97775996 + 97775976 97776016 41 ATCGGAAATAAGGAGGAGCATGCCATCCTTCTCTGTAATTT ATCGGAAATAAGGAGGAGCACGCCATCCTTCTCTGTAATTT Direct Loss 0.98790457736804 0 NA NA prediction 0.975809154736081 Functional Loss - CC2D2B ENSG00000188649 CDS Human protein_coding chr10:97775996 chr10:97775996 synonymous SNV . 0 21 hm5U_associated_SNPs_790 0 0 0 0 2 CC2D2B chr10:97775958 3'AG 97775958 Downstream 39bp
152 chr10 97775996 97775996 1 + T C LUSC 97775996 + 97775976 97776016 41 ATCGGAAATAAGGAGGAGCATGCCATCCTTCTCTGTAATTT ATCGGAAATAAGGAGGAGCACGCCATCCTTCTCTGTAATTT Direct Loss 0.98790457736804 0 NA NA prediction 0.975809154736081 Functional Loss - CC2D2B ENSG00000188649 CDS Human protein_coding chr10:97775996 chr10:97775996 synonymous SNV . 0 21 hm5U_associated_SNPs_790 0 0 0 0 2 CC2D2B chr10:97776071 5'GT 97776071 Upstream 76bp
153 chr17 45940735 45940735 1 + T A rs562176686 45940735 + 45940715 45940755 41 GAGGCAGGGGGTTTCGTTCATTGCACTACTCCCAGTGCTTG GAGGCAGGGGGTTTCGTTCAATGCACTACTCCCAGTGCTTG Direct Loss 0.987878319615283 0 NA NA prediction 0.975756639230567 Functional Loss - SP6;LOC102724532 ENSG00000264243 ncRNA_exonic Human lincRNA chr17:45940735 chr17:45940735 . . 0 21 hm5U_associated_SNPs_791 0 0 0 0 1 SP6;LOC102724532 chr17:45940785 5'GT 45940785 Upstream 51bp
154 chr11 126936972 126936972 1 + T C rs147964963 126936972 + 126936952 126936992 41 CTGCTAACCGAGATGAGAAATTACAGGTTATAATCCCCTTC CTGCTAACCGAGATGAGAAACTACAGGTTATAATCCCCTTC Direct Loss 0.987876968558665 0 NA NA prediction 0.97575393711733 Functional Loss - LOC101929473 ENSG00000255087 ncRNA_exonic Human lincRNA chr11:126936972 chr11:126936972 . . 0 21 hm5U_associated_SNPs_792 0 0 0 0 1 LOC101929473 chr11:126937012 5'GT 126937012 Upstream 41bp
155 chr16 33572065 33572065 1 + T C rs59449407 33572065 + 33572045 33572085 41 CTGGACGCCATGGCCCGAGATGGGGTGAAGGCACGCTACAT CTGGACGCCATGGCCCGAGACGGGGTGAAGGCACGCTACAT Direct Loss 0.987834710189532 0 NA NA prediction 0.975669420379063 Functional Loss - ENPP7P13 ENSG00000261580 ncRNA_exonic Human processed_pseudogene chr16:33572065 chr16:33572065 . . 0 21 hm5U_associated_SNPs_796 0 0 0 0 1 ENPP7P13 chr16:33572138 5'GT 33572138 Upstream 74bp
156 chr6 11043999 11043999 1 + T G rs573789879 11043999 + 11043979 11044019 41 AACTCCCGAGGCAGGGTGTGTGCCGCGCGCGGGAAACGCCG AACTCCCGAGGCAGGGTGTGGGCCGCGCGCGGGAAACGCCG Direct Loss 0.987770017314194 0 NA NA prediction 0.975540034628388 Functional Loss - ELOVL2-AS1 ENSG00000230314 ncRNA_exonic Human antisense chr6:11043999 chr6:11043999 . . 0 21 hm5U_associated_SNPs_799 0 0 0 0 1 ELOVL2-AS1 chr6:11044058 5'GT 11044058 Upstream 60bp
157 chr1 83920374 83920374 1 + T C UCEC 83920374 + 83920354 83920394 41 GAAGTCATAATTATGTTCACTTCCCACTGGCAACTGGCAAG GAAGTCATAATTATGTTCACCTCCCACTGGCAACTGGCAAG Direct Loss 0.987711079620789 0 NA NA prediction 0.975422159241577 Functional Loss - LINC01712 ENSG00000231364 ncRNA_exonic Human lincRNA chr1:83920374 chr1:83920374 . . 0 21 hm5U_associated_SNPs_804 0 0 0 0 1 LINC01712 chr1:83920341 3'AG 83920341 Downstream 34bp
158 chr7 142499894 142499894 1 + T C LUSC 142499894 + 142499874 142499914 41 TGCCCTCGTGCTGATGGCCATGGTAAGGAGGAGGGTGGGAT TGCCCTCGTGCTGATGGCCACGGTAAGGAGGAGGGTGGGAT Direct Loss 0.987630993635167 0 NA NA prediction 0.975261987270335 Functional Loss - PRSS3P2;EPHB6 ENSG00000211772 CDS Human TR_C_gene chr7:142499894 chr7:142499894 unknown . 0 21 hm5U_associated_SNPs_808 0 0 0 0 1 PRSS3P2;EPHB6 chr7:142499895 5'GT 142499895 Upstream 2bp
159 chr9 139744542 139744542 1 + T C STAD 139744542 + 139744522 139744562 41 GTCTGGGCGGCGGGCGCATCTCCCACCAGAGTCAGGACAAG GTCTGGGCGGCGGGCGCATCCCCCACCAGAGTCAGGACAAG Direct Loss 0.987558112377526 0 NA NA prediction 0.975116224755052 Functional Loss - PHPT1 ENSG00000054148 CDS Human protein_coding chr9:139744542 chr9:139744542 nonsynonymous SNV 1.000 1 21 hm5U_associated_SNPs_815 0 0 1 0 2 PHPT1 chr9:139744465 3'AG 139744465 Downstream 78bp
160 chr9 139744542 139744542 1 + T C STAD 139744542 + 139744522 139744562 41 GTCTGGGCGGCGGGCGCATCTCCCACCAGAGTCAGGACAAG GTCTGGGCGGCGGGCGCATCCCCCACCAGAGTCAGGACAAG Direct Loss 0.987558112377526 0 NA NA prediction 0.975116224755052 Functional Loss - PHPT1 ENSG00000054148 CDS Human protein_coding chr9:139744542 chr9:139744542 nonsynonymous SNV 1.000 1 21 hm5U_associated_SNPs_815 0 0 1 0 2 PHPT1 chr9:139744589 5'GT 139744589 Upstream 48bp
161 chr7 64649431 64649431 1 + T C rs540309606 64649431 + 64649411 64649451 41 AGAGGATCCTTCGCAGCAGCTCCTGCAGCAGAGCCTTGAAG AGAGGATCCTTCGCAGCAGCCCCTGCAGCAGAGCCTTGAAG Direct Loss 0.987549343517562 0 NA NA prediction 0.975098687035123 Functional Loss - INTS4P1 ENSG00000164669 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64649431 chr7:64649431 . . 0 21 hm5U_associated_SNPs_816 0 0 0 0 2 INTS4P1 chr7:64649358 3'AG 64649358 Downstream 74bp
162 chr7 64649431 64649431 1 + T C rs540309606 64649431 + 64649411 64649451 41 AGAGGATCCTTCGCAGCAGCTCCTGCAGCAGAGCCTTGAAG AGAGGATCCTTCGCAGCAGCCCCTGCAGCAGAGCCTTGAAG Direct Loss 0.987549343517562 0 NA NA prediction 0.975098687035123 Functional Loss - INTS4P1 ENSG00000164669 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64649431 chr7:64649431 . . 0 21 hm5U_associated_SNPs_816 0 0 0 0 2 INTS4P1 chr7:64649515 5'GT 64649515 Upstream 85bp
163 chr2 53995093 53995093 1 + T A SKCM 53995093 + 53995073 53995113 41 ATCAGGACAAGCTGGTCGGATACATCACCAACTACAGCAGG ATCAGGACAAGCTGGTCGGAAACATCACCAACTACAGCAGG Direct Loss 0.987510749083434 0 NA NA prediction 0.975021498166868 Functional Loss - CHAC2 ENSG00000143942 CDS Human protein_coding chr2:53995093 chr2:53995093 nonsynonymous SNV 0.998 1 21 hm5U_associated_SNPs_818 0 0 1 0 1 CHAC2 chr2:53995158 5'GT 53995158 Upstream 66bp
164 chr9 139700573 139700573 1 - A G ACC 139700573 - 139700553 139700593 41 CCTCCATCTGCAGCTCCAGGTTCTCCTCCGTGTTCCTCTGG CCTCCATCTGCAGCTCCAGGCTCTCCTCCGTGTTCCTCTGG Direct Loss 0.987495860327648 0 NA NA prediction 0.974991720655297 Functional Loss - CCDC183 ENSG00000213213 CDS Human antisense chr9:139700573 chr9:139700573 nonsynonymous SNV 0.920 0 21 hm5U_associated_SNPs_820 0 0 0 0 2 CCDC183-AS1 chr9:139700502 5'GT 139700502 Upstream 72bp
165 chr9 139700573 139700573 1 - A G ACC 139700573 - 139700553 139700593 41 CCTCCATCTGCAGCTCCAGGTTCTCCTCCGTGTTCCTCTGG CCTCCATCTGCAGCTCCAGGCTCTCCTCCGTGTTCCTCTGG Direct Loss 0.987495860327648 0 NA NA prediction 0.974991720655297 Functional Loss - CCDC183 ENSG00000213213 CDS Human protein_coding chr9:139700573 chr9:139700573 nonsynonymous SNV 0.920 0 21 hm5U_associated_SNPs_820 0 0 0 0 2 CCDC183 chr9:139700580 3'AG 139700580 Downstream 8bp
166 chr17 51901052 51901052 1 - A G GBM 51901052 - 51901032 51901072 41 TCGCTGGTTGAGAGGCCGCTTCCTCACGCAGACGCAGATGC TCGCTGGTTGAGAGGCCGCTCCCTCACGCAGACGCAGATGC Direct Loss 0.987258809329476 0 NA NA prediction 0.974517618658952 Functional Loss - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51901052 chr17:51901052 nonsynonymous SNV 0.995 4 21 hm5U_associated_SNPs_832 0 0 0 0 1 KIF2B chr17:51901090 3'AG 51901090 Downstream 39bp
167 chr15 76630687 76630687 1 + T C UCEC 76630687 + 76630667 76630707 41 GCGTGTACCACATCGAGTGCTTCCGCTGCTCCGTGTGCAGC GCGTGTACCACATCGAGTGCCTCCGCTGCTCCGTGTGCAGC Direct Loss 0.98710227512556 0 NA NA prediction 0.974204550251121 Functional Loss - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630687 chr15:76630687 nonsynonymous SNV 0.992 4 21 hm5U_associated_SNPs_839 0 0 1 0 1 ISL2 chr15:76630593 3'AG 76630593 Downstream 95bp
168 chr12 58121275 58121275 1 - A G CESC 58121275 - 58121255 58121295 41 GGGCACACACCTGTCCCGCGTTCGCTCGCTGGACTTGGACG GGGCACACACCTGTCCCGCGCTCGCTCGCTGGACTTGGACG Direct Loss 0.987050318631046 0 NA NA prediction 0.974100637262093 Functional Loss - AGAP2 ENSG00000135439;ENSG00000255737 CDS Human other chr12:58121275 chr12:58121275 nonsynonymous SNV 0.900 4 21 hm5U_associated_SNPs_844 0 0 0 0 1 AGAP2 chr12:58121365 3'AG 58121365 Downstream 91bp
169 chr12 129594252 129594252 1 + T A rs540078785 129594252 + 129594232 129594272 41 TGCTGCCACCACGTGAGAAGTGCCTTTCGCCTCCCGCCATG TGCTGCCACCACGTGAGAAGAGCCTTTCGCCTCCCGCCATG Direct Loss 0.987045727396246 0 NA NA prediction 0.974091454792491 Functional Loss - TMEM132D-AS1 ENSG00000249196 ncRNA_exonic Human antisense chr12:129594252 chr12:129594252 . . 0 21 hm5U_associated_SNPs_845 0 0 0 0 1 TMEM132D-AS1 chr12:129594302 5'GT 129594302 Upstream 51bp
170 chr17 20805549 20805549 1 + T A COAD 20805549 + 20805529 20805569 41 AGGAAGTCTAATGCCTACATTTAAAGGATAGCCCGGCCCCC AGGAAGTCTAATGCCTACATATAAAGGATAGCCCGGCCCCC Direct Loss 0.987028605807924 0 NA NA prediction 0.974057211615848 Functional Loss - CCDC144NL-AS1 ENSG00000233098;ENSG00000265790 ncRNA_exonic Human other chr17:20805549 chr17:20805549 . . 0 21 hm5U_associated_SNPs_846 0 0 0 0 1 CCDC144NL-AS1 chr17:20805531 3'AG 20805531 Downstream 19bp
171 chr2 96458276 96458276 1 + C T rs573016247 96458276 + 96458256 96458296 41 GTGGGTCGCTGTTGCCAGACCTGCACCCCCAAGAGCTGGGT GTGGGTCGCTGTTGCCAGACTTGCACCCCCAAGAGCTGGGT Direct Gain 0 0.993200102250811 NA NA prediction 0.986400204501622 Functional Gain - TRIM43;LINC00342 ENSG00000237510 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96458276 chr2:96458276 . . 0 21 hm5U_associated_SNPs_2870 0 0 0 0 2 TRIM43;LINC00342 chr2:96458181 3'AG 96458181 Downstream 96bp
172 chr2 96458276 96458276 1 + C T rs573016247 96458276 + 96458256 96458296 41 GTGGGTCGCTGTTGCCAGACCTGCACCCCCAAGAGCTGGGT GTGGGTCGCTGTTGCCAGACTTGCACCCCCAAGAGCTGGGT Direct Gain 0 0.993200102250811 NA NA prediction 0.986400204501622 Functional Gain - TRIM43;LINC00342 ENSG00000237510 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96458276 chr2:96458276 . . 0 21 hm5U_associated_SNPs_2870 0 0 0 0 2 TRIM43;LINC00342 chr2:96458294 5'GT 96458294 Upstream 19bp
173 chr4 105412166 105412166 1 + G T HNSC 105412166 + 105412146 105412186 41 ACGCACTGTCTGTGACGGCTGCTGAGGCTGCTGCGGGGGAG ACGCACTGTCTGTGACGGCTTCTGAGGCTGCTGCGGGGGAG Direct Gain 0 0.993040882780711 NA NA prediction 0.986081765561422 Functional Gain - CXXC4 ENSG00000168772 CDS Human protein_coding chr4:105412166 chr4:105412166 nonsynonymous SNV 1.000 2 21 hm5U_associated_SNPs_2986 0 0 0 0 1 CXXC4 chr4:105412217 5'GT 105412217 Upstream 52bp
174 chr2 96458263 96458263 1 + G T STAD 96458263 + 96458243 96458283 41 GTATCGCCCCTTTGTGGGTCGCTGTTGCCAGACCTGCACCC GTATCGCCCCTTTGTGGGTCTCTGTTGCCAGACCTGCACCC Direct Gain 0 0.990197979227319 NA NA prediction 0.980395958454637 Functional Gain - TRIM43;LINC00342 ENSG00000237510 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96458263 chr2:96458263 . . 0 21 hm5U_associated_SNPs_5843 0 0 0 0 2 TRIM43;LINC00342 chr2:96458181 3'AG 96458181 Downstream 83bp
175 chr2 96458263 96458263 1 + G T STAD 96458263 + 96458243 96458283 41 GTATCGCCCCTTTGTGGGTCGCTGTTGCCAGACCTGCACCC GTATCGCCCCTTTGTGGGTCTCTGTTGCCAGACCTGCACCC Direct Gain 0 0.990197979227319 NA NA prediction 0.980395958454637 Functional Gain - TRIM43;LINC00342 ENSG00000237510 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96458263 chr2:96458263 . . 0 21 hm5U_associated_SNPs_5843 0 0 0 0 2 TRIM43;LINC00342 chr2:96458294 5'GT 96458294 Upstream 32bp
176 chr5 92923638 92923638 1 + G T UCEC 92923638 + 92923618 92923658 41 GTCAGCGGTTCAGCGAGGAAGAATGCCTCCAACCCAGCCCA GTCAGCGGTTCAGCGAGGAATAATGCCTCCAACCCAGCCCA Direct Gain 0 0.99000647968665 NA NA prediction 0.980012959373301 Functional Gain - NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92923638 chr5:92923638 nonsynonymous SNV 1.000 2 21 hm5U_associated_SNPs_6114 0 0 1 0 1 NR2F1 chr5:92923623 3'AG 92923623 Downstream 16bp
177 chr1 26497088 26497088 1 + C T COAD 26497088 + 26497068 26497108 41 TGAAGCAGCTGAGCGTCGAGCCCTACAGTCAGGAAGAGGCG TGAAGCAGCTGAGCGTCGAGTCCTACAGTCAGGAAGAGGCG Direct Gain 0 0.989506791326214 NA NA prediction 0.979013582652428 Functional Gain - ZNF593 ENSG00000142684 CDS Human protein_coding chr1:26497088 chr1:26497088 nonsynonymous SNV 0.979 4 21 hm5U_associated_SNPs_6785 0 0 1 0 1 ZNF593 chr1:26497066 3'AG 26497066 Downstream 23bp
178 chr19 2339883 2339883 1 + C T LUSC 2339883 + 2339863 2339903 41 CAGGAGGACGAGGCGGTGGACGTGACGCCGGTGATGACCTG CAGGAGGACGAGGCGGTGGATGTGACGCCGGTGATGACCTG Direct Gain 0 0.988535281151857 NA NA prediction 0.977070562303714 Functional Gain - SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2339883 chr19:2339883 . . 0 21 hm5U_associated_SNPs_8177 0 0 1 0 3 SPPL2B chr19:2339823 3'AG 2339823 Downstream 61bp
179 chr19 2339883 2339883 1 + C T LUSC 2339883 + 2339863 2339903 41 CAGGAGGACGAGGCGGTGGACGTGACGCCGGTGATGACCTG CAGGAGGACGAGGCGGTGGATGTGACGCCGGTGATGACCTG Direct Gain 0 0.988535281151857 NA NA prediction 0.977070562303714 Functional Gain - SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2339883 chr19:2339883 . . 0 21 hm5U_associated_SNPs_8177 0 0 1 0 3 SPPL2B chr19:2339826 3'AG 2339826 Downstream 58bp
180 chr19 2339883 2339883 1 + C T LUSC 2339883 + 2339863 2339903 41 CAGGAGGACGAGGCGGTGGACGTGACGCCGGTGATGACCTG CAGGAGGACGAGGCGGTGGATGTGACGCCGGTGATGACCTG Direct Gain 0 0.988535281151857 NA NA prediction 0.977070562303714 Functional Gain - SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2339883 chr19:2339883 . . 0 21 hm5U_associated_SNPs_8177 0 0 1 0 3 SPPL2B chr19:2339965 5'GT 2339965 Upstream 83bp
181 chr22 21357280 21357280 1 + G T UCEC 21357280 + 21357260 21357300 41 AGATCCTCGCGGGCCTCGGAGAATTCCCCCACTGCCATGCC AGATCCTCGCGGGCCTCGGATAATTCCCCCACTGCCATGCC Direct Gain 0 0.988316266887338 NA NA prediction 0.976632533774676 Functional Gain - THAP7-AS1 ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21357280 chr22:21357280 . . 0 21 hm5U_associated_SNPs_8505 0 0 1 0 1 THAP7-AS1 chr22:21357207 3'AG 21357207 Downstream 74bp
182 chr11 65687863 65687863 1 + G T LUAD 65687863 + 65687843 65687883 41 TTGACTTCTTGAAGGACCTGGTGGCATCTGTTCCCGACATG TTGACTTCTTGAAGGACCTGTTGGCATCTGTTCCCGACATG Direct Gain 0 0.988223694876671 NA NA prediction 0.976447389753342 Functional Gain - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65687863 chr11:65687863 nonsynonymous SNV 0.966 4 21 hm5U_associated_SNPs_8612 0 0 1 0 2 DRAP1 chr11:65687814 3'AG 65687814 Downstream 50bp
183 chr11 65687863 65687863 1 + G T LUAD 65687863 + 65687843 65687883 41 TTGACTTCTTGAAGGACCTGGTGGCATCTGTTCCCGACATG TTGACTTCTTGAAGGACCTGTTGGCATCTGTTCCCGACATG Direct Gain 0 0.988223694876671 NA NA prediction 0.976447389753342 Functional Gain - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65687863 chr11:65687863 nonsynonymous SNV 0.966 4 21 hm5U_associated_SNPs_8612 0 0 1 0 2 DRAP1 chr11:65687933 5'GT 65687933 Upstream 71bp
184 chr19 12799150 12799150 1 - C A rs543075085 12799150 - 12799130 12799170 41 GGCTTCTTCTCCTTGAAGGAGTTGGTGGCGGCCGGGATGCC GGCTTCTTCTCCTTGAAGGATTTGGTGGCGGCCGGGATGCC Direct Gain 0 0.987799214175135 NA NA prediction 0.97559842835027 Functional Gain - GNG14 ENSG00000132004 UTR3 Human protein_coding chr19:12799150 chr19:12799150 . . 0 21 hm5U_associated_SNPs_9287 0 0 0 0 1 GNG14 chr19:12799152 3'AG 12799152 Downstream 3bp
185 chr5 3596426 3596426 1 + G T LUSC 3596426 + 3596406 3596446 41 ATGTACGCGGCGGCGGGGCCGTACGCGGGCGCGCCCAACTA ATGTACGCGGCGGCGGGGCCTTACGCGGGCGCGCCCAACTA Direct Gain 0 0.987541793309472 NA NA prediction 0.975083586618943 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3596426 chr5:3596426 synonymous SNV . 0 21 hm5U_associated_SNPs_9672 0 0 0 0 1 IRX1 chr5:3596495 5'GT 3596495 Upstream 70bp
186 chr16 2283125 2283125 1 + C T SKCM 2283125 + 2283105 2283145 41 ATGCCAAGGGCACCGTCATCCACGAAGTCCACGTCCAGATG ATGCCAAGGGCACCGTCATCTACGAAGTCCACGTCCAGATG Direct Gain 0 0.98714559375826 NA NA prediction 0.97429118751652 Functional Gain - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2283125 chr16:2283125 nonsynonymous SNV 1.000 2 21 hm5U_associated_SNPs_10252 0 0 1 0 1 E4F1 chr16:2283184 5'GT 2283184 Upstream 60bp