1 chr2 39005363 39005363 1 + A G rs147596385 39005363 + 39005343 39005383 41 GTCTCAGGCGGTCTCCGCTCAACGATCCTTCCTCAAAGCAT GTCTCAGGCGGTCTCCGCTCGACGATCCTTCCTCAAAGCAT Direct Loss 1 0.359962235627831 NA NA experiment 1 Functional Loss 28002401;GSE78040;miCLIP;HEK293T;Control GEMIN6 ENSG00000152147 UTR5 Human protein_coding chr2:39005363 chr2:39005363 . . 0 21 hm6Am_associated_SNPs_1 0 0 1 0 1 GEMIN6 chr2:39005423 5'GT 39005423 Upstream 61bp
2 chr7 2281861 2281861 1 + A G rs372759004 2281861 + 2281841 2281881 41 GCCTGGCCTCACTTCCGGTCAGAGGCCACGCCCCCGGAAGC GCCTGGCCTCACTTCCGGTCGGAGGCCACGCCCCCGGAAGC Direct Loss 1 0.978607000447947 NA NA experiment 1 Functional Loss 28002401;GSE78040;miCLIP;HEK293T;Control NUDT1 ENSG00000106268 UTR5 Human protein_coding chr7:2281861 chr7:2281861 . . 0 21 hm6Am_associated_SNPs_4 0 0 0 0 2 NUDT1 chr7:2281891 5'GT 2281891 Upstream 31bp
3 chr7 2281861 2281861 1 + A G rs372759004 2281861 + 2281841 2281881 41 GCCTGGCCTCACTTCCGGTCAGAGGCCACGCCCCCGGAAGC GCCTGGCCTCACTTCCGGTCGGAGGCCACGCCCCCGGAAGC Direct Loss 1 0.978607000447947 NA NA experiment 1 Functional Loss 28002401;GSE78040;miCLIP;HEK293T;Control NUDT1 ENSG00000106268 UTR5 Human protein_coding chr7:2281861 chr7:2281861 . . 0 21 hm6Am_associated_SNPs_4 0 0 0 0 2 NUDT1 chr7:2281927 5'GT 2281927 Upstream 67bp
4 chr7 98972353 98972353 1 + A G rs528777918 98972353 + 98972333 98972373 41 GCTGCTCCGGCGCGGAGCCCAGAGCCGGTTCGGCGCGTCGA GCTGCTCCGGCGCGGAGCCCGGAGCCGGTTCGGCGCGTCGA Direct Loss 1 0.991498381518747 NA NA experiment 1 Functional Loss 28002401;GSE78040;miCLIP;HEK293T;Control ARPC1B ENSG00000130429 UTR5 Human protein_coding chr7:98972353 chr7:98972353 . . 0 21 hm6Am_associated_SNPs_5 0 0 1 0 1 ARPC1B chr7:98972404 5'GT 98972404 Upstream 52bp
5 chrX 11129452 11129452 1 + A C rs772661172 11129452 + 11129432 11129472 41 CGCCGGCGGTGACCGCAGCCACAGCGGTGACCGAGTGAGAG CGCCGGCGGTGACCGCAGCCCCAGCGGTGACCGAGTGAGAG Direct Loss 1 0.994731992012106 NA NA experiment 1 Functional Loss 28002401;GSE78040;miCLIP;HEK293T;Control HCCS ENSG00000004961 UTR5 Human protein_coding chrX:11129452 chrX:11129452 . . 0 21 hm6Am_associated_SNPs_12 0 0 1 0 1 HCCS chrX:11129543 5'GT 11129543 Upstream 92bp
6 chr2 85770066 85770066 1 + A G UCEC 85770066 + 85770046 85770086 41 CTCATCCATTATCTATCTCCATTTTCCATTATGGTACCTCT CTCATCCATTATCTATCTCCGTTTTCCATTATGGTACCTCT Direct Loss 1 0.332910053535301 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody MAT2A ENSG00000168906 CDS Human protein_coding chr2:85770066 chr2:85770066 nonsynonymous SNV 1.000 2 21 hm6Am_associated_SNPs_14 0 0 1 0 2 MAT2A chr2:85770024 3'AG 85770024 Downstream 43bp
7 chr2 85770066 85770066 1 + A G UCEC 85770066 + 85770046 85770086 41 CTCATCCATTATCTATCTCCATTTTCCATTATGGTACCTCT CTCATCCATTATCTATCTCCGTTTTCCATTATGGTACCTCT Direct Loss 1 0.332910053535301 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody MAT2A ENSG00000168906 CDS Human protein_coding chr2:85770066 chr2:85770066 nonsynonymous SNV 1.000 2 21 hm6Am_associated_SNPs_14 0 0 1 0 2 MAT2A chr2:85770157 5'GT 85770157 Upstream 92bp
8 chr2 39005345 39005345 1 + C G rs115869851 39005363 + 39005343 39005383 41 GTCTCAGGCGGTCTCCGCTCAACGATCCTTCCTCAAAGCAT GTGTCAGGCGGTCTCCGCTCAACGATCCTTCCTCAAAGCAT < 41bp 1 0.323754079203273 NA NA experiment 1 Functional Loss 28002401;GSE78040;miCLIP;HEK293T;Control GEMIN6 ENSG00000152147 UTR5 Human protein_coding chr2:39005363 chr2:39005345 . . 0 3 hm6Am_associated_SNPs_17 0 0 0 0 1 GEMIN6 chr2:39005423 5'GT 39005423 Upstream 79bp
9 chr2 39005356 39005356 1 + T A rs187659588 39005363 + 39005343 39005383 41 GTCTCAGGCGGTCTCCGCTCAACGATCCTTCCTCAAAGCAT GTCTCAGGCGGTCACCGCTCAACGATCCTTCCTCAAAGCAT < 41bp 1 0.353274386885966 NA NA experiment 1 Functional Loss 28002401;GSE78040;miCLIP;HEK293T;Control GEMIN6 ENSG00000152147 UTR5 Human protein_coding chr2:39005363 chr2:39005356 . . 0 14 hm6Am_associated_SNPs_18 0 0 1 0 1 GEMIN6 chr2:39005423 5'GT 39005423 Upstream 68bp
10 chr11 66410940 66410940 1 + G A rs187740636 66410947 + 66410927 66410967 41 GAATGCACGTGCAGTTGTCCACCAGCCGGCTTAGGACTGCG GAATGCACGTGCAATTGTCCACCAGCCGGCTTAGGACTGCG < 41bp 1 0.319143213839673 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody RBM14-RBM4;RBM4 ENSG00000173933;ENSG00000248643 CDS Human other chr11:66410947 chr11:66410940 synonymous SNV . 0 14 hm6Am_associated_SNPs_28 0 0 1 0 1 RBM14-RBM4;RBM4 chr11:66410921 3'AG 66410921 Downstream 20bp
11 chr12 6647109 6647109 1 + T A rs1803621 6647096 + 6647076 6647116 41 TGACTTCAACAGCGACACCCACTCCTCCACCTTTGACGCTG TGACTTCAACAGCGACACCCACTCCTCCACCTTAGACGCTG < 41bp 1 0.351380326662705 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6647096 chr12:6647109 nonsynonymous SNV 0.968 3 34 hm6Am_associated_SNPs_29 0 0 1 0 1 GAPDH chr12:6647162 5'GT 6647162 Upstream 54bp
12 chr17 7478498 7478498 1 + G A rs7358 7478484 + 7478464 7478504 41 CTGGGACTGGGAAAACGGCCACATTTGCCATATCGATTCTG CTGGGACTGGGAAAACGGCCACATTTGCCATATCAATTCTG < 41bp 1 0.285990137155448 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7478484 chr17:7478498 synonymous SNV . 0 35 hm6Am_associated_SNPs_35 0 0 1 0 2 EIF4A1 chr17:7478437 3'AG 7478437 Downstream 62bp
13 chr17 7478498 7478498 1 + G A rs7358 7478484 + 7478464 7478504 41 CTGGGACTGGGAAAACGGCCACATTTGCCATATCGATTCTG CTGGGACTGGGAAAACGGCCACATTTGCCATATCAATTCTG < 41bp 1 0.285990137155448 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7478484 chr17:7478498 synonymous SNV . 0 35 hm6Am_associated_SNPs_35 0 0 1 0 2 EIF4A1 chr17:7478576 5'GT 7478576 Upstream 79bp
14 chr21 33039654 33039654 1 + C G BLCA 33039649 + 33039629 33039669 41 ATTGAAGATTCTGTGATCTCACTCTCAGGAGACCATTGCAT ATTGAAGATTCTGTGATCTCACTCTGAGGAGACCATTGCAT < 41bp 1 0.260423583758134 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control SOD1 ENSG00000142168 CDS Human protein_coding chr21:33039649 chr21:33039654 stopgain 0.953 0 26 hm6Am_associated_SNPs_48 0 0 1 0 2 SOD1 chr21:33039571 3'AG 33039571 Downstream 84bp
15 chr21 33039654 33039654 1 + C G BLCA 33039649 + 33039629 33039669 41 ATTGAAGATTCTGTGATCTCACTCTCAGGAGACCATTGCAT ATTGAAGATTCTGTGATCTCACTCTGAGGAGACCATTGCAT < 41bp 1 0.260423583758134 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control SOD1 ENSG00000142168 CDS Human protein_coding chr21:33039649 chr21:33039654 stopgain 0.953 0 26 hm6Am_associated_SNPs_48 0 0 1 0 2 SOD1 chr21:33039688 5'GT 33039688 Upstream 35bp
16 chr17 7478464 7478464 1 + C G BLCA 7478484 + 7478464 7478504 41 CTGGGACTGGGAAAACGGCCACATTTGCCATATCGATTCTG GTGGGACTGGGAAAACGGCCACATTTGCCATATCGATTCTG < 41bp 1 0.32388989445121 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7478484 chr17:7478464 nonsynonymous SNV 1.000 4 1 hm6Am_associated_SNPs_50 0 0 1 0 1 EIF4A1 chr17:7478437 3'AG 7478437 Downstream 28bp
17 chr12 6647116 6647116 1 + G T BLCA 6647096 + 6647076 6647116 41 TGACTTCAACAGCGACACCCACTCCTCCACCTTTGACGCTG TGACTTCAACAGCGACACCCACTCCTCCACCTTTGACGCTT < 41bp 1 0.386214665619425 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6647096 chr12:6647116 nonsynonymous SNV 0.989 4 41 hm6Am_associated_SNPs_51 0 0 1 0 1 GAPDH chr12:6647162 5'GT 6647162 Upstream 47bp
18 chr12 6647115 6647115 1 + T C BLCA 6647096 + 6647076 6647116 41 TGACTTCAACAGCGACACCCACTCCTCCACCTTTGACGCTG TGACTTCAACAGCGACACCCACTCCTCCACCTTTGACGCCG < 41bp 1 0.40935821320875 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6647096 chr12:6647115 synonymous SNV . 0 40 hm6Am_associated_SNPs_52 0 0 1 0 1 GAPDH chr12:6647162 5'GT 6647162 Upstream 48bp
19 chr21 33039646 33039646 1 + C G BRCA 33039649 + 33039629 33039669 41 ATTGAAGATTCTGTGATCTCACTCTCAGGAGACCATTGCAT ATTGAAGATTCTGTGATGTCACTCTCAGGAGACCATTGCAT < 41bp 1 0.318692009409338 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control SOD1 ENSG00000142168 CDS Human protein_coding chr21:33039649 chr21:33039646 nonsynonymous SNV 0.860 5 18 hm6Am_associated_SNPs_54 0 0 1 0 2 SOD1 chr21:33039571 3'AG 33039571 Downstream 76bp
20 chr21 33039646 33039646 1 + C G BRCA 33039649 + 33039629 33039669 41 ATTGAAGATTCTGTGATCTCACTCTCAGGAGACCATTGCAT ATTGAAGATTCTGTGATGTCACTCTCAGGAGACCATTGCAT < 41bp 1 0.318692009409338 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control SOD1 ENSG00000142168 CDS Human protein_coding chr21:33039649 chr21:33039646 nonsynonymous SNV 0.860 5 18 hm6Am_associated_SNPs_54 0 0 1 0 2 SOD1 chr21:33039688 5'GT 33039688 Upstream 43bp
21 chr1 116941625 116941625 1 + G A CESC 116941620 + 116941600 116941640 41 CCAGTAACATTCCCGAGATCACCCCGTTCCTGATATTTATT CCAGTAACATTCCCGAGATCACCCCATTCCTGATATTTATT < 41bp 1 0.145985985378657 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116941620 chr1:116941625 synonymous SNV . 0 26 hm6Am_associated_SNPs_56 0 0 1 0 2 ATP1A1 chr1:116941552 3'AG 116941552 Downstream 74bp
22 chr1 116941625 116941625 1 + G A CESC 116941620 + 116941600 116941640 41 CCAGTAACATTCCCGAGATCACCCCGTTCCTGATATTTATT CCAGTAACATTCCCGAGATCACCCCATTCCTGATATTTATT < 41bp 1 0.145985985378657 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116941620 chr1:116941625 synonymous SNV . 0 26 hm6Am_associated_SNPs_56 0 0 1 0 2 ATP1A1 chr1:116941706 5'GT 116941706 Upstream 82bp
23 chr1 62914170 62914170 1 + G C CESC 62914185 + 62914165 62914205 41 ACCCTGAGATGGGCAATTTCACAATTTGCTTCAGTAGAAAG ACCCTCAGATGGGCAATTTCACAATTTGCTTCAGTAGAAAG < 41bp 1 0.40902830584567 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control USP1 ENSG00000162607 CDS Human protein_coding chr1:62914185 chr1:62914170 synonymous SNV . 0 6 hm6Am_associated_SNPs_57 0 0 1 0 1 USP1 chr1:62914136 3'AG 62914136 Downstream 35bp
24 chr3 160149569 160149569 1 + G A CESC 160149580 + 160149560 160149600 41 CGGTGTCATGAAATGAAACCAAACCTCGGTGCCATCGCAGA CGGTGTCATAAAATGAAACCAAACCTCGGTGCCATCGCAGA < 41bp 1 0.100191118919158 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody SMC4 ENSG00000113810 CDS Human protein_coding chr3:160149580 chr3:160149569 nonsynonymous SNV 1.000 1 10 hm6Am_associated_SNPs_58 0 0 1 0 1 SMC4 chr3:160149613 5'GT 160149613 Upstream 45bp
25 chr10 17278316 17278316 1 + C T CESC 17278309 + 17278289 17278329 41 TTAGAAACTAATCTGGATTCACTCCCTCTGGTTGATACCCA TTAGAAACTAATCTGGATTCACTCCCTTTGGTTGATACCCA < 41bp 1 0.341447163461521 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278309 chr10:17278316 synonymous SNV . 0 28 hm6Am_associated_SNPs_59 0 0 1 0 2 VIM chr10:17278293 3'AG 17278293 Downstream 24bp
26 chr10 17278316 17278316 1 + C T CESC 17278309 + 17278289 17278329 41 TTAGAAACTAATCTGGATTCACTCCCTCTGGTTGATACCCA TTAGAAACTAATCTGGATTCACTCCCTTTGGTTGATACCCA < 41bp 1 0.341447163461521 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278309 chr10:17278316 synonymous SNV . 0 28 hm6Am_associated_SNPs_59 0 0 1 0 2 VIM chr10:17278378 5'GT 17278378 Upstream 63bp
27 chr3 184019379 184019379 1 + G A CESC 184019388 + 184019368 184019408 41 GTGGGGAGCGTGAGTGCCTCAAGTATCGGCTAGTGGGCTCC GTGGGGAGCGTAAGTGCCTCAAGTATCGGCTAGTGGGCTCC < 41bp 1 0.399592432600774 NA NA experiment 1 Functional Loss 28002401;GSE78040;miCLIP;HEK293T;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184019388 chr3:184019379 nonsynonymous SNV 0.892 1 12 hm6Am_associated_SNPs_60 0 0 1 0 1 PSMD2 chr3:184019446 5'GT 184019446 Upstream 68bp
28 chr11 66410945 66410945 1 + C T CHOL 66410947 + 66410927 66410967 41 GAATGCACGTGCAGTTGTCCACCAGCCGGCTTAGGACTGCG GAATGCACGTGCAGTTGTTCACCAGCCGGCTTAGGACTGCG < 41bp 1 0.398872827216307 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody RBM14-RBM4;RBM4 ENSG00000173933;ENSG00000248643 CDS Human other chr11:66410947 chr11:66410945 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_62 0 0 1 0 1 RBM14-RBM4;RBM4 chr11:66410921 3'AG 66410921 Downstream 25bp
29 chr20 57485765 57485765 1 + C T COAD 57485769 + 57485749 57485789 41 TGCCAGTGGAGATGGGCGTCACTACTGCTACCCTCATTTCA TGCCAGTGGAGATGGGTGTCACTACTGCTACCCTCATTTCA < 41bp 1 0.510947767168673 NA NA experiment 0.978104465662653 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485769 chr20:57485765 nonsynonymous SNV 0.999 5 17 hm6Am_associated_SNPs_63 0 0 1 4 1 GNAS chr20:57485738 3'AG 57485738 Downstream 28bp
30 chr12 49936542 49936542 1 + C T COAD 49936533 + 49936513 49936553 41 GGGCACGATCCAAAGGCTTCAATGCCAACCGGCGGCGGAGC GGGCACGATCCAAAGGCTTCAATGCCAACTGGCGGCGGAGC < 41bp 1 0.551487811659906 NA NA experiment 0.897024376680189 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49936533 chr12:49936542 nonsynonymous SNV 1.000 5 30 hm6Am_associated_SNPs_64 0 0 0 0 2 KCNH3 chr12:49936489 3'AG 49936489 Downstream 54bp
31 chr12 49936542 49936542 1 + C T COAD 49936533 + 49936513 49936553 41 GGGCACGATCCAAAGGCTTCAATGCCAACCGGCGGCGGAGC GGGCACGATCCAAAGGCTTCAATGCCAACTGGCGGCGGAGC < 41bp 1 0.551487811659906 NA NA experiment 0.897024376680189 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49936533 chr12:49936542 nonsynonymous SNV 1.000 5 30 hm6Am_associated_SNPs_64 0 0 0 0 2 KCNH3 chr12:49936622 5'GT 49936622 Upstream 81bp
32 chr12 49936527 49936527 1 + G T COAD 49936533 + 49936513 49936553 41 GGGCACGATCCAAAGGCTTCAATGCCAACCGGCGGCGGAGC GGGCACGATCCAAATGCTTCAATGCCAACCGGCGGCGGAGC < 41bp 1 0.628833793408611 NA NA experiment 0.742332413182778 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49936533 chr12:49936527 nonsynonymous SNV 1.000 4 15 hm6Am_associated_SNPs_66 0 0 0 0 2 KCNH3 chr12:49936489 3'AG 49936489 Downstream 39bp
33 chr12 49936527 49936527 1 + G T COAD 49936533 + 49936513 49936553 41 GGGCACGATCCAAAGGCTTCAATGCCAACCGGCGGCGGAGC GGGCACGATCCAAATGCTTCAATGCCAACCGGCGGCGGAGC < 41bp 1 0.628833793408611 NA NA experiment 0.742332413182778 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49936533 chr12:49936527 nonsynonymous SNV 1.000 4 15 hm6Am_associated_SNPs_66 0 0 0 0 2 KCNH3 chr12:49936622 5'GT 49936622 Upstream 96bp
34 chr15 91346807 91346807 1 + C T COAD 91346806 + 91346786 91346826 41 GGAAAAGGATCTGCTTATTCACGACACAATGCCGAAAGACT GGAAAAGGATCTGCTTATTCATGACACAATGCCGAAAGACT < 41bp 1 0.131397036111324 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91346806 chr15:91346807 stopgain 1.000 1 22 hm6Am_associated_SNPs_67 1 0 1 0 1 BLM chr15:91346751 3'AG 91346751 Downstream 57bp
35 chr12 69991051 69991051 1 + C T COAD 69991035 + 69991015 69991055 41 TGGAGAAGACAAACTCATTCACTTTTCTGGGGTTGCCCTTG TGGAGAAGACAAACTCATTCACTTTTCTGGGGTTGCTCTTG < 41bp 1 0.322300905331067 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control CCT2 ENSG00000166226 CDS Human protein_coding chr12:69991035 chr12:69991051 synonymous SNV . 0 37 hm6Am_associated_SNPs_71 0 0 1 0 1 CCT2 chr12:69991055 5'GT 69991055 Upstream 5bp
36 chr15 91346823 91346823 1 + G T COAD 91346806 + 91346786 91346826 41 GGAAAAGGATCTGCTTATTCACGACACAATGCCGAAAGACT GGAAAAGGATCTGCTTATTCACGACACAATGCCGAAATACT < 41bp 1 0.185871975727156 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91346806 chr15:91346823 nonsynonymous SNV 1.000 2 38 hm6Am_associated_SNPs_73 0 0 1 0 1 BLM chr15:91346751 3'AG 91346751 Downstream 73bp
37 chr2 85770071 85770071 1 + C T ESCA 85770066 + 85770046 85770086 41 CTCATCCATTATCTATCTCCATTTTCCATTATGGTACCTCT CTCATCCATTATCTATCTCCATTTTTCATTATGGTACCTCT < 41bp 1 0.290676055619181 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody MAT2A ENSG00000168906 CDS Human protein_coding chr2:85770066 chr2:85770071 synonymous SNV . 0 26 hm6Am_associated_SNPs_74 0 0 1 0 2 MAT2A chr2:85770024 3'AG 85770024 Downstream 48bp
38 chr2 85770071 85770071 1 + C T ESCA 85770066 + 85770046 85770086 41 CTCATCCATTATCTATCTCCATTTTCCATTATGGTACCTCT CTCATCCATTATCTATCTCCATTTTTCATTATGGTACCTCT < 41bp 1 0.290676055619181 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody MAT2A ENSG00000168906 CDS Human protein_coding chr2:85770066 chr2:85770071 synonymous SNV . 0 26 hm6Am_associated_SNPs_74 0 0 1 0 2 MAT2A chr2:85770157 5'GT 85770157 Upstream 87bp
39 chr17 41477126 41477126 1 + C T GBM 41477131 + 41477111 41477151 41 ACTTGACTGAGATGGCGCCCACTGCCTCCTCCTTCTTGCCC ACTTGACTGAGATGGTGCCCACTGCCTCCTCCTTCTTGCCC < 41bp 1 0.573843198074613 NA NA experiment 0.852313603850773 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control ARL4D ENSG00000175906 CDS Human protein_coding chr17:41477131 chr17:41477126 nonsynonymous SNV 0.954 1 16 hm6Am_associated_SNPs_75 0 0 0 0 1 ARL4D chr17:41477029 3'AG 41477029 Downstream 98bp
40 chr12 6647098 6647098 1 + T G GBM 6647096 + 6647076 6647116 41 TGACTTCAACAGCGACACCCACTCCTCCACCTTTGACGCTG TGACTTCAACAGCGACACCCACGCCTCCACCTTTGACGCTG < 41bp 1 0.222136869885152 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6647096 chr12:6647098 nonsynonymous SNV 0.986 4 23 hm6Am_associated_SNPs_76 0 0 1 0 1 GAPDH chr12:6647162 5'GT 6647162 Upstream 65bp
41 chr3 184019397 184019397 1 + C T GBM 184019388 + 184019368 184019408 41 GTGGGGAGCGTGAGTGCCTCAAGTATCGGCTAGTGGGCTCC GTGGGGAGCGTGAGTGCCTCAAGTATCGGTTAGTGGGCTCC < 41bp 1 0.366260048711067 NA NA experiment 1 Functional Loss 28002401;GSE78040;miCLIP;HEK293T;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184019388 chr3:184019397 synonymous SNV . 0 30 hm6Am_associated_SNPs_77 0 0 1 0 1 PSMD2 chr3:184019446 5'GT 184019446 Upstream 50bp
42 chr11 66410966 66410966 1 + C T GBM 66410947 + 66410927 66410967 41 GAATGCACGTGCAGTTGTCCACCAGCCGGCTTAGGACTGCG GAATGCACGTGCAGTTGTCCACCAGCCGGCTTAGGACTGTG < 41bp 1 0.299874884639025 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody RBM14-RBM4;RBM4 ENSG00000173933;ENSG00000248643 CDS Human other chr11:66410947 chr11:66410966 nonsynonymous SNV 1.000 0 40 hm6Am_associated_SNPs_78 0 0 1 0 1 RBM14-RBM4;RBM4 chr11:66410921 3'AG 66410921 Downstream 46bp
43 chr3 160149596 160149596 1 + G A HNSC 160149580 + 160149560 160149600 41 CGGTGTCATGAAATGAAACCAAACCTCGGTGCCATCGCAGA CGGTGTCATGAAATGAAACCAAACCTCGGTGCCATCACAGA < 41bp 1 0.102784883951498 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody SMC4 ENSG00000113810 CDS Human protein_coding chr3:160149580 chr3:160149596 nonsynonymous SNV 0.994 2 37 hm6Am_associated_SNPs_81 0 0 1 0 1 SMC4 chr3:160149613 5'GT 160149613 Upstream 18bp
44 chr11 62652990 62652990 1 + C T HNSC 62653009 + 62652989 62653029 41 TCTACCAGCTGATGCTCTTCACCCTGCCAGGGACCCCTGTT TTTACCAGCTGATGCTCTTCACCCTGCCAGGGACCCCTGTT < 41bp 1 0.246851862737177 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62653009 chr11:62652990 synonymous SNV . 0 2 hm6Am_associated_SNPs_85 0 0 1 0 2 SLC3A2 chr11:62652937 3'AG 62652937 Downstream 54bp
45 chr11 62652990 62652990 1 + C T HNSC 62653009 + 62652989 62653029 41 TCTACCAGCTGATGCTCTTCACCCTGCCAGGGACCCCTGTT TTTACCAGCTGATGCTCTTCACCCTGCCAGGGACCCCTGTT < 41bp 1 0.246851862737177 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62653009 chr11:62652990 synonymous SNV . 0 2 hm6Am_associated_SNPs_85 0 0 1 0 2 SLC3A2 chr11:62653080 5'GT 62653080 Upstream 91bp
46 chr15 91346818 91346818 1 + C T HNSC 91346806 + 91346786 91346826 41 GGAAAAGGATCTGCTTATTCACGACACAATGCCGAAAGACT GGAAAAGGATCTGCTTATTCACGACACAATGCTGAAAGACT < 41bp 1 0.175679855890415 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91346806 chr15:91346818 synonymous SNV . 0 33 hm6Am_associated_SNPs_86 1 0 1 0 1 BLM chr15:91346751 3'AG 91346751 Downstream 68bp
47 chr19 50001200 50001200 1 + A G KIRC 50001206 + 50001186 50001226 41 AGATGAAGATGCAGAGGACCATTGTCATCCGCCGAGACTAT AGATGAAGATGCAGGGGACCATTGTCATCCGCCGAGACTAT < 41bp 1 0.372223732404611 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody RPS11 ENSG00000142534 CDS Human protein_coding chr19:50001206 chr19:50001200 nonsynonymous SNV 0.998 3 15 hm6Am_associated_SNPs_87 0 0 1 0 1 RPS11 chr19:50001174 3'AG 50001174 Downstream 27bp
48 chr12 120984320 120984320 1 + G C KIRC 120984308 + 120984288 120984328 41 CAGTCCCGTCGCTCCAGTTCACAGAAAAGCAAGACTTTTAA CAGTCCCGTCGCTCCAGTTCACAGAAAAGCAACACTTTTAA < 41bp 1 0.363360252488671 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control RNF10 ENSG00000022840 CDS Human protein_coding chr12:120984308 chr12:120984320 nonsynonymous SNV 0.997 5 33 hm6Am_associated_SNPs_88 0 0 1 1 1 RNF10 chr12:120984404 5'GT 120984404 Upstream 85bp
49 chr15 91346812 91346812 1 + C A KIRC 91346806 + 91346786 91346826 41 GGAAAAGGATCTGCTTATTCACGACACAATGCCGAAAGACT GGAAAAGGATCTGCTTATTCACGACAAAATGCCGAAAGACT < 41bp 1 0.171901471983036 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91346806 chr15:91346812 nonsynonymous SNV 1.000 2 27 hm6Am_associated_SNPs_89 0 0 1 0 1 BLM chr15:91346751 3'AG 91346751 Downstream 62bp
50 chr12 132212924 132212924 1 + C T LGG 132212907 + 132212887 132212927 41 AGGCACAGGCTGACAGTTCCACTCCCACCCCACACAACGCA AGGCACAGGCTGACAGTTCCACTCCCACCCCACACAATGCA < 41bp 1 0.528989234937506 NA NA experiment 0.942021530124987 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132212907 chr12:132212924 synonymous SNV . 0 38 hm6Am_associated_SNPs_93 0 0 1 0 2 SFSWAP chr12:132212838 3'AG 132212838 Downstream 87bp
51 chr12 132212924 132212924 1 + C T LGG 132212907 + 132212887 132212927 41 AGGCACAGGCTGACAGTTCCACTCCCACCCCACACAACGCA AGGCACAGGCTGACAGTTCCACTCCCACCCCACACAATGCA < 41bp 1 0.528989234937506 NA NA experiment 0.942021530124987 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132212907 chr12:132212924 synonymous SNV . 0 38 hm6Am_associated_SNPs_93 0 0 1 0 2 SFSWAP chr12:132212973 5'GT 132212973 Upstream 50bp
52 chr19 50001210 50001210 1 + T C LGG 50001206 + 50001186 50001226 41 AGATGAAGATGCAGAGGACCATTGTCATCCGCCGAGACTAT AGATGAAGATGCAGAGGACCATTGCCATCCGCCGAGACTAT < 41bp 1 0.304991423872061 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody RPS11 ENSG00000142534 CDS Human protein_coding chr19:50001206 chr19:50001210 nonsynonymous SNV 1.000 1 25 hm6Am_associated_SNPs_94 0 0 1 0 2 RPS11 chr19:50001174 3'AG 50001174 Downstream 37bp
53 chr19 50001210 50001210 1 + T C LGG 50001206 + 50001186 50001226 41 AGATGAAGATGCAGAGGACCATTGTCATCCGCCGAGACTAT AGATGAAGATGCAGAGGACCATTGCCATCCGCCGAGACTAT < 41bp 1 0.304991423872061 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody RPS11 ENSG00000142534 CDS Human protein_coding chr19:50001206 chr19:50001210 nonsynonymous SNV 1.000 1 25 hm6Am_associated_SNPs_94 0 0 1 0 2 RPS11 chr19:50001303 5'GT 50001303 Upstream 94bp
54 chr12 69991024 69991024 1 + C T LGG 69991035 + 69991015 69991055 41 TGGAGAAGACAAACTCATTCACTTTTCTGGGGTTGCCCTTG TGGAGAAGATAAACTCATTCACTTTTCTGGGGTTGCCCTTG < 41bp 1 0.320741701298574 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control CCT2 ENSG00000166226 CDS Human protein_coding chr12:69991035 chr12:69991024 synonymous SNV . 0 10 hm6Am_associated_SNPs_95 0 0 1 0 2 CCT2 chr12:69990936 3'AG 69990936 Downstream 89bp
55 chr12 69991024 69991024 1 + C T LGG 69991035 + 69991015 69991055 41 TGGAGAAGACAAACTCATTCACTTTTCTGGGGTTGCCCTTG TGGAGAAGATAAACTCATTCACTTTTCTGGGGTTGCCCTTG < 41bp 1 0.320741701298574 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control CCT2 ENSG00000166226 CDS Human protein_coding chr12:69991035 chr12:69991024 synonymous SNV . 0 10 hm6Am_associated_SNPs_95 0 0 1 0 2 CCT2 chr12:69991055 5'GT 69991055 Upstream 32bp
56 chr3 89456488 89456488 1 + T A LIHC 89456468 + 89456448 89456488 41 GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCT GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCA < 41bp 1 0.0995325785517955 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89456468 chr3:89456488 nonsynonymous SNV 0.230 3 41 hm6Am_associated_SNPs_96 0 0 0 0 2 EPHA3 chr3:89456419 3'AG 89456419 Downstream 70bp
57 chr3 89456488 89456488 1 + T A LIHC 89456468 + 89456448 89456488 41 GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCT GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCA < 41bp 1 0.0995325785517955 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89456468 chr3:89456488 nonsynonymous SNV 0.230 3 41 hm6Am_associated_SNPs_96 0 0 0 0 2 EPHA3 chr3:89456521 5'GT 89456521 Upstream 34bp
58 chr10 17278320 17278320 1 + T C LIHC 17278309 + 17278289 17278329 41 TTAGAAACTAATCTGGATTCACTCCCTCTGGTTGATACCCA TTAGAAACTAATCTGGATTCACTCCCTCTGGCTGATACCCA < 41bp 1 0.447522199345244 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278309 chr10:17278320 nonsynonymous SNV 0.997 2 32 hm6Am_associated_SNPs_99 0 0 1 0 2 VIM chr10:17278293 3'AG 17278293 Downstream 28bp
59 chr10 17278320 17278320 1 + T C LIHC 17278309 + 17278289 17278329 41 TTAGAAACTAATCTGGATTCACTCCCTCTGGTTGATACCCA TTAGAAACTAATCTGGATTCACTCCCTCTGGCTGATACCCA < 41bp 1 0.447522199345244 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278309 chr10:17278320 nonsynonymous SNV 0.997 2 32 hm6Am_associated_SNPs_99 0 0 1 0 2 VIM chr10:17278378 5'GT 17278378 Upstream 59bp
60 chr2 85770059 85770059 1 + T C LIHC 85770066 + 85770046 85770086 41 CTCATCCATTATCTATCTCCATTTTCCATTATGGTACCTCT CTCATCCATTATCCATCTCCATTTTCCATTATGGTACCTCT < 41bp 1 0.348678373007477 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody MAT2A ENSG00000168906 CDS Human protein_coding chr2:85770066 chr2:85770059 synonymous SNV . 0 14 hm6Am_associated_SNPs_100 0 0 1 0 2 MAT2A chr2:85770024 3'AG 85770024 Downstream 36bp
61 chr2 85770059 85770059 1 + T C LIHC 85770066 + 85770046 85770086 41 CTCATCCATTATCTATCTCCATTTTCCATTATGGTACCTCT CTCATCCATTATCCATCTCCATTTTCCATTATGGTACCTCT < 41bp 1 0.348678373007477 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody MAT2A ENSG00000168906 CDS Human protein_coding chr2:85770066 chr2:85770059 synonymous SNV . 0 14 hm6Am_associated_SNPs_100 0 0 1 0 2 MAT2A chr2:85770157 5'GT 85770157 Upstream 99bp
62 chr1 116941613 116941613 1 + C T LUAD 116941620 + 116941600 116941640 41 CCAGTAACATTCCCGAGATCACCCCGTTCCTGATATTTATT CCAGTAACATTCCTGAGATCACCCCGTTCCTGATATTTATT < 41bp 1 0.154258350750827 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116941620 chr1:116941613 synonymous SNV . 0 14 hm6Am_associated_SNPs_101 0 0 1 0 2 ATP1A1 chr1:116941552 3'AG 116941552 Downstream 62bp
63 chr1 116941613 116941613 1 + C T LUAD 116941620 + 116941600 116941640 41 CCAGTAACATTCCCGAGATCACCCCGTTCCTGATATTTATT CCAGTAACATTCCTGAGATCACCCCGTTCCTGATATTTATT < 41bp 1 0.154258350750827 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116941620 chr1:116941613 synonymous SNV . 0 14 hm6Am_associated_SNPs_101 0 0 1 0 2 ATP1A1 chr1:116941706 5'GT 116941706 Upstream 94bp
64 chr3 184019377 184019377 1 + G A LUAD 184019388 + 184019368 184019408 41 GTGGGGAGCGTGAGTGCCTCAAGTATCGGCTAGTGGGCTCC GTGGGGAGCATGAGTGCCTCAAGTATCGGCTAGTGGGCTCC < 41bp 1 0.424815876155784 NA NA experiment 1 Functional Loss 28002401;GSE78040;miCLIP;HEK293T;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184019388 chr3:184019377 nonsynonymous SNV 0.825 2 10 hm6Am_associated_SNPs_104 0 0 1 0 1 PSMD2 chr3:184019446 5'GT 184019446 Upstream 70bp
65 chr3 89456471 89456471 1 + G A LUAD 89456468 + 89456448 89456488 41 GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCT GTGGTCATGATCGCCATTTCAGCAGCAGTAGCAATTATTCT < 41bp 1 0.101958121091404 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89456468 chr3:89456471 synonymous SNV . 0 24 hm6Am_associated_SNPs_106 0 0 0 0 2 EPHA3 chr3:89456419 3'AG 89456419 Downstream 53bp
66 chr3 89456471 89456471 1 + G A LUAD 89456468 + 89456448 89456488 41 GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCT GTGGTCATGATCGCCATTTCAGCAGCAGTAGCAATTATTCT < 41bp 1 0.101958121091404 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89456468 chr3:89456471 synonymous SNV . 0 24 hm6Am_associated_SNPs_106 0 0 0 0 2 EPHA3 chr3:89456521 5'GT 89456521 Upstream 51bp
67 chr11 31531495 31531495 1 + C T LUAD 31531476 + 31531456 31531496 41 GCGGCCCTCGACTGGTGTCCATTGCGGGCACGCGACCGTCG GCGGCCCTCGACTGGTGTCCATTGCGGGCACGCGACCGTTG < 41bp 1 0.770679412083553 NA NA experiment 0.458641175832895 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody ELP4 ENSG00000109911 CDS Human protein_coding chr11:31531476 chr11:31531495 nonsynonymous SNV 1.000 4 40 hm6Am_associated_SNPs_107 0 0 1 0 1 ELP4 chr11:31531554 5'GT 31531554 Upstream 60bp
68 chr10 17278315 17278315 1 + T A LUSC 17278309 + 17278289 17278329 41 TTAGAAACTAATCTGGATTCACTCCCTCTGGTTGATACCCA TTAGAAACTAATCTGGATTCACTCCCACTGGTTGATACCCA < 41bp 1 0.396069967284399 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278309 chr10:17278315 synonymous SNV . 0 27 hm6Am_associated_SNPs_108 0 0 1 0 2 VIM chr10:17278293 3'AG 17278293 Downstream 23bp
69 chr10 17278315 17278315 1 + T A LUSC 17278309 + 17278289 17278329 41 TTAGAAACTAATCTGGATTCACTCCCTCTGGTTGATACCCA TTAGAAACTAATCTGGATTCACTCCCACTGGTTGATACCCA < 41bp 1 0.396069967284399 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278309 chr10:17278315 synonymous SNV . 0 27 hm6Am_associated_SNPs_108 0 0 1 0 2 VIM chr10:17278378 5'GT 17278378 Upstream 64bp
70 chr16 29819900 29819900 1 + G A LUSC 29819912 + 29819892 29819932 41 AATGTGAGGCAGCTTTCGCCACGAAGGATCGGCTGCGGGCG AATGTGAGACAGCTTTCGCCACGAAGGATCGGCTGCGGGCG < 41bp 1 0.595425999829594 NA NA experiment 0.809148000340811 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control MAZ ENSG00000103495 CDS Human protein_coding chr16:29819912 chr16:29819900 nonsynonymous SNV 1.000 4 9 hm6Am_associated_SNPs_110 0 0 1 1 1 MAZ chr16:29819891 3'AG 29819891 Downstream 10bp
71 chr8 38067587 38067587 1 + G A LUSC 38067593 + 38067573 38067613 41 CAACTTTCCTTGCAGTGTCCATCAGTACGAATCCTCGGGGA CAACTTTCCTTGCAATGTCCATCAGTACGAATCCTCGGGGA < 41bp 1 0.0965487130877829 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody BAG4 ENSG00000156735 CDS Human protein_coding chr8:38067593 chr8:38067587 nonsynonymous SNV 0.994 0 15 hm6Am_associated_SNPs_113 0 0 1 0 1 BAG4 chr8:38067526 3'AG 38067526 Downstream 62bp
72 chr10 17278303 17278303 1 + G T LUSC 17278309 + 17278289 17278329 41 TTAGAAACTAATCTGGATTCACTCCCTCTGGTTGATACCCA TTAGAAACTAATCTTGATTCACTCCCTCTGGTTGATACCCA < 41bp 1 0.449588676774468 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278309 chr10:17278303 synonymous SNV . 0 15 hm6Am_associated_SNPs_114 0 0 1 0 2 VIM chr10:17278293 3'AG 17278293 Downstream 11bp
73 chr10 17278303 17278303 1 + G T LUSC 17278309 + 17278289 17278329 41 TTAGAAACTAATCTGGATTCACTCCCTCTGGTTGATACCCA TTAGAAACTAATCTTGATTCACTCCCTCTGGTTGATACCCA < 41bp 1 0.449588676774468 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278309 chr10:17278303 synonymous SNV . 0 15 hm6Am_associated_SNPs_114 0 0 1 0 2 VIM chr10:17278378 5'GT 17278378 Upstream 76bp
74 chr10 17278304 17278304 1 + G T LUSC 17278309 + 17278289 17278329 41 TTAGAAACTAATCTGGATTCACTCCCTCTGGTTGATACCCA TTAGAAACTAATCTGTATTCACTCCCTCTGGTTGATACCCA < 41bp 1 0.419456227626376 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278309 chr10:17278304 nonsynonymous SNV 1.000 2 16 hm6Am_associated_SNPs_115 0 0 1 0 2 VIM chr10:17278293 3'AG 17278293 Downstream 12bp
75 chr10 17278304 17278304 1 + G T LUSC 17278309 + 17278289 17278329 41 TTAGAAACTAATCTGGATTCACTCCCTCTGGTTGATACCCA TTAGAAACTAATCTGTATTCACTCCCTCTGGTTGATACCCA < 41bp 1 0.419456227626376 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278309 chr10:17278304 nonsynonymous SNV 1.000 2 16 hm6Am_associated_SNPs_115 0 0 1 0 2 VIM chr10:17278378 5'GT 17278378 Upstream 75bp
76 chr12 132212921 132212921 1 + C T OV 132212907 + 132212887 132212927 41 AGGCACAGGCTGACAGTTCCACTCCCACCCCACACAACGCA AGGCACAGGCTGACAGTTCCACTCCCACCCCACATAACGCA < 41bp 1 0.572571968609442 NA NA experiment 0.854856062781116 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132212907 chr12:132212921 synonymous SNV . 0 35 hm6Am_associated_SNPs_117 0 0 1 0 2 SFSWAP chr12:132212838 3'AG 132212838 Downstream 84bp
77 chr12 132212921 132212921 1 + C T OV 132212907 + 132212887 132212927 41 AGGCACAGGCTGACAGTTCCACTCCCACCCCACACAACGCA AGGCACAGGCTGACAGTTCCACTCCCACCCCACATAACGCA < 41bp 1 0.572571968609442 NA NA experiment 0.854856062781116 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132212907 chr12:132212921 synonymous SNV . 0 35 hm6Am_associated_SNPs_117 0 0 1 0 2 SFSWAP chr12:132212973 5'GT 132212973 Upstream 53bp
78 chr3 89456453 89456453 1 + C T OV 89456468 + 89456448 89456488 41 GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCT GTGGTTATGATCGCCATTTCAGCGGCAGTAGCAATTATTCT < 41bp 1 0.0933532844732387 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89456468 chr3:89456453 synonymous SNV . 0 6 hm6Am_associated_SNPs_121 0 0 0 0 2 EPHA3 chr3:89456419 3'AG 89456419 Downstream 35bp
79 chr3 89456453 89456453 1 + C T OV 89456468 + 89456448 89456488 41 GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCT GTGGTTATGATCGCCATTTCAGCGGCAGTAGCAATTATTCT < 41bp 1 0.0933532844732387 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89456468 chr3:89456453 synonymous SNV . 0 6 hm6Am_associated_SNPs_121 0 0 0 0 2 EPHA3 chr3:89456521 5'GT 89456521 Upstream 69bp
80 chr15 91346826 91346826 1 + T G PAAD 91346806 + 91346786 91346826 41 GGAAAAGGATCTGCTTATTCACGACACAATGCCGAAAGACT GGAAAAGGATCTGCTTATTCACGACACAATGCCGAAAGACG < 41bp 1 0.200082381670673 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91346806 chr15:91346826 nonsynonymous SNV 1.000 2 41 hm6Am_associated_SNPs_122 0 0 1 0 1 BLM chr15:91346751 3'AG 91346751 Downstream 76bp
81 chr1 182852411 182852411 1 + C T PAAD 182852402 + 182852382 182852422 41 AAAAGAGGAAGATTCTCACCACTGAAGGGCGTAATGCACTT AAAAGAGGAAGATTCTCACCACTGAAGGGTGTAATGCACTT < 41bp 1 0.214491660775389 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182852402 chr1:182852411 nonsynonymous SNV 0.985 4 30 hm6Am_associated_SNPs_123 0 0 1 0 1 DHX9 chr1:182852503 5'GT 182852503 Upstream 93bp
82 chr11 66410927 66410927 1 + G A READ 66410947 + 66410927 66410967 41 GAATGCACGTGCAGTTGTCCACCAGCCGGCTTAGGACTGCG AAATGCACGTGCAGTTGTCCACCAGCCGGCTTAGGACTGCG < 41bp 1 0.296410117354977 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody RBM14-RBM4;RBM4 ENSG00000173933;ENSG00000248643 CDS Human other chr11:66410947 chr11:66410927 nonsynonymous SNV 1.000 2 1 hm6Am_associated_SNPs_125 0 0 1 0 1 RBM14-RBM4;RBM4 chr11:66410921 3'AG 66410921 Downstream 7bp
83 chr8 38067591 38067591 1 + C T SKCM 38067593 + 38067573 38067613 41 CAACTTTCCTTGCAGTGTCCATCAGTACGAATCCTCGGGGA CAACTTTCCTTGCAGTGTTCATCAGTACGAATCCTCGGGGA < 41bp 1 0.139736365725084 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody BAG4 ENSG00000156735 CDS Human protein_coding chr8:38067593 chr8:38067591 synonymous SNV . 0 19 hm6Am_associated_SNPs_128 0 0 1 0 1 BAG4 chr8:38067526 3'AG 38067526 Downstream 66bp
84 chr10 17278313 17278313 1 + C T SKCM 17278309 + 17278289 17278329 41 TTAGAAACTAATCTGGATTCACTCCCTCTGGTTGATACCCA TTAGAAACTAATCTGGATTCACTCTCTCTGGTTGATACCCA < 41bp 1 0.466811224760057 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278309 chr10:17278313 nonsynonymous SNV 1.000 2 25 hm6Am_associated_SNPs_129 0 0 1 0 2 VIM chr10:17278293 3'AG 17278293 Downstream 21bp
85 chr10 17278313 17278313 1 + C T SKCM 17278309 + 17278289 17278329 41 TTAGAAACTAATCTGGATTCACTCCCTCTGGTTGATACCCA TTAGAAACTAATCTGGATTCACTCTCTCTGGTTGATACCCA < 41bp 1 0.466811224760057 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278309 chr10:17278313 nonsynonymous SNV 1.000 2 25 hm6Am_associated_SNPs_129 0 0 1 0 2 VIM chr10:17278378 5'GT 17278378 Upstream 66bp
86 chr11 62653010 62653010 1 + C T SKCM 62653009 + 62652989 62653029 41 TCTACCAGCTGATGCTCTTCACCCTGCCAGGGACCCCTGTT TCTACCAGCTGATGCTCTTCATCCTGCCAGGGACCCCTGTT < 41bp 1 0.184037855570852 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62653009 chr11:62653010 nonsynonymous SNV 0.983 5 22 hm6Am_associated_SNPs_130 0 0 1 0 2 SLC3A2 chr11:62652937 3'AG 62652937 Downstream 74bp
87 chr11 62653010 62653010 1 + C T SKCM 62653009 + 62652989 62653029 41 TCTACCAGCTGATGCTCTTCACCCTGCCAGGGACCCCTGTT TCTACCAGCTGATGCTCTTCATCCTGCCAGGGACCCCTGTT < 41bp 1 0.184037855570852 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62653009 chr11:62653010 nonsynonymous SNV 0.983 5 22 hm6Am_associated_SNPs_130 0 0 1 0 2 SLC3A2 chr11:62653080 5'GT 62653080 Upstream 71bp
88 chr1 116941601 116941601 1 + C T SKCM 116941620 + 116941600 116941640 41 CCAGTAACATTCCCGAGATCACCCCGTTCCTGATATTTATT CTAGTAACATTCCCGAGATCACCCCGTTCCTGATATTTATT < 41bp 1 0.150767022561864 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116941620 chr1:116941601 synonymous SNV . 0 2 hm6Am_associated_SNPs_132 0 0 1 0 1 ATP1A1 chr1:116941552 3'AG 116941552 Downstream 50bp
89 chr2 85770052 85770052 1 + C T SKCM 85770066 + 85770046 85770086 41 CTCATCCATTATCTATCTCCATTTTCCATTATGGTACCTCT CTCATCTATTATCTATCTCCATTTTCCATTATGGTACCTCT < 41bp 1 0.326050936472557 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody MAT2A ENSG00000168906 CDS Human protein_coding chr2:85770066 chr2:85770052 nonsynonymous SNV 1.000 5 7 hm6Am_associated_SNPs_133 0 0 1 0 1 MAT2A chr2:85770024 3'AG 85770024 Downstream 29bp
90 chr10 17278314 17278314 1 + C T SKCM 17278309 + 17278289 17278329 41 TTAGAAACTAATCTGGATTCACTCCCTCTGGTTGATACCCA TTAGAAACTAATCTGGATTCACTCCTTCTGGTTGATACCCA < 41bp 1 0.378888808020047 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278309 chr10:17278314 nonsynonymous SNV 1.000 2 26 hm6Am_associated_SNPs_145 0 0 1 0 2 VIM chr10:17278293 3'AG 17278293 Downstream 22bp
91 chr10 17278314 17278314 1 + C T SKCM 17278309 + 17278289 17278329 41 TTAGAAACTAATCTGGATTCACTCCCTCTGGTTGATACCCA TTAGAAACTAATCTGGATTCACTCCTTCTGGTTGATACCCA < 41bp 1 0.378888808020047 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278309 chr10:17278314 nonsynonymous SNV 1.000 2 26 hm6Am_associated_SNPs_145 0 0 1 0 2 VIM chr10:17278378 5'GT 17278378 Upstream 65bp
92 chr3 184019395 184019395 1 + G A STAD 184019388 + 184019368 184019408 41 GTGGGGAGCGTGAGTGCCTCAAGTATCGGCTAGTGGGCTCC GTGGGGAGCGTGAGTGCCTCAAGTATCAGCTAGTGGGCTCC < 41bp 1 0.366624527740821 NA NA experiment 1 Functional Loss 28002401;GSE78040;miCLIP;HEK293T;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184019388 chr3:184019395 nonsynonymous SNV 0.995 2 28 hm6Am_associated_SNPs_147 0 0 1 0 1 PSMD2 chr3:184019446 5'GT 184019446 Upstream 52bp
93 chr3 89456459 89456459 1 + C T STAD 89456468 + 89456448 89456488 41 GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCT GTGGTCATGATTGCCATTTCAGCGGCAGTAGCAATTATTCT < 41bp 1 0.097865434750334 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89456468 chr3:89456459 synonymous SNV . 0 12 hm6Am_associated_SNPs_148 0 0 0 0 2 EPHA3 chr3:89456419 3'AG 89456419 Downstream 41bp
94 chr3 89456459 89456459 1 + C T STAD 89456468 + 89456448 89456488 41 GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCT GTGGTCATGATTGCCATTTCAGCGGCAGTAGCAATTATTCT < 41bp 1 0.097865434750334 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89456468 chr3:89456459 synonymous SNV . 0 12 hm6Am_associated_SNPs_148 0 0 0 0 2 EPHA3 chr3:89456521 5'GT 89456521 Upstream 63bp
95 chr10 71124621 71124621 1 + C T STAD 71124620 + 71124600 71124640 41 AGAAGTTACCTGTGGGATTCACGTTTTCTTTTCCTTGCCAA AGAAGTTACCTGTGGGATTCATGTTTTCTTTTCCTTGCCAA < 41bp 1 0.148398195779459 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71124620 chr10:71124621 nonsynonymous SNV 0.997 4 22 hm6Am_associated_SNPs_150 0 0 1 0 2 HK1 chr10:71124539 3'AG 71124539 Downstream 83bp
96 chr10 71124621 71124621 1 + C T STAD 71124620 + 71124600 71124640 41 AGAAGTTACCTGTGGGATTCACGTTTTCTTTTCCTTGCCAA AGAAGTTACCTGTGGGATTCATGTTTTCTTTTCCTTGCCAA < 41bp 1 0.148398195779459 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71124620 chr10:71124621 nonsynonymous SNV 0.997 4 22 hm6Am_associated_SNPs_150 0 0 1 0 2 HK1 chr10:71124658 5'GT 71124658 Upstream 38bp
97 chr15 91346819 91346819 1 + G A STAD 91346806 + 91346786 91346826 41 GGAAAAGGATCTGCTTATTCACGACACAATGCCGAAAGACT GGAAAAGGATCTGCTTATTCACGACACAATGCCAAAAGACT < 41bp 1 0.195914785835005 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91346806 chr15:91346819 nonsynonymous SNV 0.996 2 34 hm6Am_associated_SNPs_151 2 0 1 0 1 BLM chr15:91346751 3'AG 91346751 Downstream 69bp
98 chr11 66410965 66410965 1 + G A STAD 66410947 + 66410927 66410967 41 GAATGCACGTGCAGTTGTCCACCAGCCGGCTTAGGACTGCG GAATGCACGTGCAGTTGTCCACCAGCCGGCTTAGGACTACG < 41bp 1 0.288264695401754 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody RBM14-RBM4;RBM4 ENSG00000173933;ENSG00000248643 CDS Human other chr11:66410947 chr11:66410965 nonsynonymous SNV 1.000 0 39 hm6Am_associated_SNPs_152 0 0 1 0 1 RBM14-RBM4;RBM4 chr11:66410921 3'AG 66410921 Downstream 45bp
99 chr12 69991044 69991044 1 + G T THCA 69991035 + 69991015 69991055 41 TGGAGAAGACAAACTCATTCACTTTTCTGGGGTTGCCCTTG TGGAGAAGACAAACTCATTCACTTTTCTGTGGTTGCCCTTG < 41bp 1 0.351149562965172 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control CCT2 ENSG00000166226 CDS Human protein_coding chr12:69991035 chr12:69991044 nonsynonymous SNV 1.000 4 30 hm6Am_associated_SNPs_155 0 0 1 0 1 CCT2 chr12:69991055 5'GT 69991055 Upstream 12bp
100 chr19 49517829 49517829 1 + G A UCEC 49517814 + 49517794 49517834 41 ACCGGCTGCTTATCGTCTCCACCACCCCCTACAGCGAGAAA ACCGGCTGCTTATCGTCTCCACCACCCCCTACAGCAAGAAA < 41bp 1 0.266045840049875 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49517814 chr19:49517829 nonsynonymous SNV 0.995 1 36 hm6Am_associated_SNPs_158 0 0 1 1 2 RUVBL2 chr19:49517741 3'AG 49517741 Downstream 89bp
101 chr19 49517829 49517829 1 + G A UCEC 49517814 + 49517794 49517834 41 ACCGGCTGCTTATCGTCTCCACCACCCCCTACAGCGAGAAA ACCGGCTGCTTATCGTCTCCACCACCCCCTACAGCAAGAAA < 41bp 1 0.266045840049875 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49517814 chr19:49517829 nonsynonymous SNV 0.995 1 36 hm6Am_associated_SNPs_158 0 0 1 1 2 RUVBL2 chr19:49517860 5'GT 49517860 Upstream 32bp
102 chr12 6647111 6647111 1 + A G UCEC 6647096 + 6647076 6647116 41 TGACTTCAACAGCGACACCCACTCCTCCACCTTTGACGCTG TGACTTCAACAGCGACACCCACTCCTCCACCTTTGGCGCTG < 41bp 1 0.390623233812593 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6647096 chr12:6647111 nonsynonymous SNV 0.965 4 36 hm6Am_associated_SNPs_160 0 0 1 0 1 GAPDH chr12:6647162 5'GT 6647162 Upstream 52bp
103 chr12 6647106 6647106 1 + C A UCEC 6647096 + 6647076 6647116 41 TGACTTCAACAGCGACACCCACTCCTCCACCTTTGACGCTG TGACTTCAACAGCGACACCCACTCCTCCACATTTGACGCTG < 41bp 1 0.360532219717946 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6647096 chr12:6647106 synonymous SNV . 0 31 hm6Am_associated_SNPs_162 0 0 1 0 1 GAPDH chr12:6647162 5'GT 6647162 Upstream 57bp
104 chr3 89456460 89456460 1 + G A UCEC 89456468 + 89456448 89456488 41 GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCT GTGGTCATGATCACCATTTCAGCGGCAGTAGCAATTATTCT < 41bp 1 0.104960017160766 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89456468 chr3:89456460 nonsynonymous SNV 0.424 1 13 hm6Am_associated_SNPs_163 0 0 0 0 2 EPHA3 chr3:89456419 3'AG 89456419 Downstream 42bp
105 chr3 89456460 89456460 1 + G A UCEC 89456468 + 89456448 89456488 41 GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCT GTGGTCATGATCACCATTTCAGCGGCAGTAGCAATTATTCT < 41bp 1 0.104960017160766 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89456468 chr3:89456460 nonsynonymous SNV 0.424 1 13 hm6Am_associated_SNPs_163 0 0 0 0 2 EPHA3 chr3:89456521 5'GT 89456521 Upstream 62bp
106 chr21 33039639 33039639 1 + C T UCEC 33039649 + 33039629 33039669 41 ATTGAAGATTCTGTGATCTCACTCTCAGGAGACCATTGCAT ATTGAAGATTTTGTGATCTCACTCTCAGGAGACCATTGCAT < 41bp 1 0.297496589691863 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control SOD1 ENSG00000142168 CDS Human protein_coding chr21:33039649 chr21:33039639 nonsynonymous SNV 0.042 2 11 hm6Am_associated_SNPs_164 0 0 1 0 2 SOD1 chr21:33039571 3'AG 33039571 Downstream 69bp
107 chr21 33039639 33039639 1 + C T UCEC 33039649 + 33039629 33039669 41 ATTGAAGATTCTGTGATCTCACTCTCAGGAGACCATTGCAT ATTGAAGATTTTGTGATCTCACTCTCAGGAGACCATTGCAT < 41bp 1 0.297496589691863 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control SOD1 ENSG00000142168 CDS Human protein_coding chr21:33039649 chr21:33039639 nonsynonymous SNV 0.042 2 11 hm6Am_associated_SNPs_164 0 0 1 0 2 SOD1 chr21:33039688 5'GT 33039688 Upstream 50bp
108 chr20 57485766 57485766 1 + G A UCEC 57485769 + 57485749 57485789 41 TGCCAGTGGAGATGGGCGTCACTACTGCTACCCTCATTTCA TGCCAGTGGAGATGGGCATCACTACTGCTACCCTCATTTCA < 41bp 1 0.519575205954548 NA NA experiment 0.960849588090903 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485769 chr20:57485766 nonsynonymous SNV 1.000 4 18 hm6Am_associated_SNPs_165 0 0 1 4 1 GNAS chr20:57485738 3'AG 57485738 Downstream 29bp
109 chr3 89456487 89456487 1 + C T UCEC 89456468 + 89456448 89456488 41 GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCT GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTTT < 41bp 1 0.0831220173086813 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89456468 chr3:89456487 nonsynonymous SNV 0.168 1 40 hm6Am_associated_SNPs_166 0 0 0 0 2 EPHA3 chr3:89456419 3'AG 89456419 Downstream 69bp
110 chr3 89456487 89456487 1 + C T UCEC 89456468 + 89456448 89456488 41 GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCT GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTTT < 41bp 1 0.0831220173086813 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89456468 chr3:89456487 nonsynonymous SNV 0.168 1 40 hm6Am_associated_SNPs_166 0 0 0 0 2 EPHA3 chr3:89456521 5'GT 89456521 Upstream 35bp
111 chr21 33039662 33039662 1 + C A UCEC 33039649 + 33039629 33039669 41 ATTGAAGATTCTGTGATCTCACTCTCAGGAGACCATTGCAT ATTGAAGATTCTGTGATCTCACTCTCAGGAGACAATTGCAT < 41bp 1 0.30208023055589 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control SOD1 ENSG00000142168 CDS Human protein_coding chr21:33039649 chr21:33039662 nonsynonymous SNV 0.872 1 34 hm6Am_associated_SNPs_168 0 0 1 0 2 SOD1 chr21:33039571 3'AG 33039571 Downstream 92bp
112 chr21 33039662 33039662 1 + C A UCEC 33039649 + 33039629 33039669 41 ATTGAAGATTCTGTGATCTCACTCTCAGGAGACCATTGCAT ATTGAAGATTCTGTGATCTCACTCTCAGGAGACAATTGCAT < 41bp 1 0.30208023055589 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control SOD1 ENSG00000142168 CDS Human protein_coding chr21:33039649 chr21:33039662 nonsynonymous SNV 0.872 1 34 hm6Am_associated_SNPs_168 0 0 1 0 2 SOD1 chr21:33039688 5'GT 33039688 Upstream 27bp
113 chr3 160149595 160149595 1 + C T UCEC 160149580 + 160149560 160149600 41 CGGTGTCATGAAATGAAACCAAACCTCGGTGCCATCGCAGA CGGTGTCATGAAATGAAACCAAACCTCGGTGCCATTGCAGA < 41bp 1 0.114784769450332 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody SMC4 ENSG00000113810 CDS Human protein_coding chr3:160149580 chr3:160149595 synonymous SNV . 0 36 hm6Am_associated_SNPs_170 0 0 1 0 1 SMC4 chr3:160149613 5'GT 160149613 Upstream 19bp
114 chr19 49517808 49517808 1 + G A UCEC 49517814 + 49517794 49517834 41 ACCGGCTGCTTATCGTCTCCACCACCCCCTACAGCGAGAAA ACCGGCTGCTTATCATCTCCACCACCCCCTACAGCGAGAAA < 41bp 1 0.25817291768538 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49517814 chr19:49517808 nonsynonymous SNV 0.871 0 15 hm6Am_associated_SNPs_176 0 0 1 1 2 RUVBL2 chr19:49517741 3'AG 49517741 Downstream 68bp
115 chr19 49517808 49517808 1 + G A UCEC 49517814 + 49517794 49517834 41 ACCGGCTGCTTATCGTCTCCACCACCCCCTACAGCGAGAAA ACCGGCTGCTTATCATCTCCACCACCCCCTACAGCGAGAAA < 41bp 1 0.25817291768538 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49517814 chr19:49517808 nonsynonymous SNV 0.871 0 15 hm6Am_associated_SNPs_176 0 0 1 1 2 RUVBL2 chr19:49517860 5'GT 49517860 Upstream 53bp
116 chr3 89456470 89456470 1 + C T UCEC 89456468 + 89456448 89456488 41 GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCT GTGGTCATGATCGCCATTTCAGTGGCAGTAGCAATTATTCT < 41bp 1 0.162268733173281 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89456468 chr3:89456470 nonsynonymous SNV 0.046 1 23 hm6Am_associated_SNPs_178 0 0 0 0 2 EPHA3 chr3:89456419 3'AG 89456419 Downstream 52bp
117 chr3 89456470 89456470 1 + C T UCEC 89456468 + 89456448 89456488 41 GTGGTCATGATCGCCATTTCAGCGGCAGTAGCAATTATTCT GTGGTCATGATCGCCATTTCAGTGGCAGTAGCAATTATTCT < 41bp 1 0.162268733173281 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89456468 chr3:89456470 nonsynonymous SNV 0.046 1 23 hm6Am_associated_SNPs_178 0 0 0 0 2 EPHA3 chr3:89456521 5'GT 89456521 Upstream 52bp
118 chr3 160149586 160149586 1 + C T UCEC 160149580 + 160149560 160149600 41 CGGTGTCATGAAATGAAACCAAACCTCGGTGCCATCGCAGA CGGTGTCATGAAATGAAACCAAACCTTGGTGCCATCGCAGA < 41bp 1 0.0875563118138355 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;sysy antinbody SMC4 ENSG00000113810 CDS Human protein_coding chr3:160149580 chr3:160149586 synonymous SNV . 0 27 hm6Am_associated_SNPs_180 0 0 1 0 1 SMC4 chr3:160149613 5'GT 160149613 Upstream 28bp
119 chr10 71124630 71124630 1 + T C UCEC 71124620 + 71124600 71124640 41 AGAAGTTACCTGTGGGATTCACGTTTTCTTTTCCTTGCCAA AGAAGTTACCTGTGGGATTCACGTTTTCTTCTCCTTGCCAA < 41bp 1 0.238844807697845 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71124620 chr10:71124630 nonsynonymous SNV 0.986 5 31 hm6Am_associated_SNPs_182 0 0 1 0 2 HK1 chr10:71124539 3'AG 71124539 Downstream 92bp
120 chr10 71124630 71124630 1 + T C UCEC 71124620 + 71124600 71124640 41 AGAAGTTACCTGTGGGATTCACGTTTTCTTTTCCTTGCCAA AGAAGTTACCTGTGGGATTCACGTTTTCTTCTCCTTGCCAA < 41bp 1 0.238844807697845 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71124620 chr10:71124630 nonsynonymous SNV 0.986 5 31 hm6Am_associated_SNPs_182 0 0 1 0 2 HK1 chr10:71124658 5'GT 71124658 Upstream 29bp
121 chr15 91346787 91346787 1 + G T UCEC 91346806 + 91346786 91346826 41 GGAAAAGGATCTGCTTATTCACGACACAATGCCGAAAGACT GTAAAAGGATCTGCTTATTCACGACACAATGCCGAAAGACT < 41bp 1 0.188645895521105 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91346806 chr15:91346787 nonsynonymous SNV 1.000 2 2 hm6Am_associated_SNPs_183 0 0 1 0 1 BLM chr15:91346751 3'AG 91346751 Downstream 37bp
122 chr16 29819931 29819931 1 + C T UCEC 29819912 + 29819892 29819932 41 AATGTGAGGCAGCTTTCGCCACGAAGGATCGGCTGCGGGCG AATGTGAGGCAGCTTTCGCCACGAAGGATCGGCTGCGGGTG < 41bp 1 0.606260805595108 NA NA experiment 0.787478388809785 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control MAZ ENSG00000103495 CDS Human protein_coding chr16:29819912 chr16:29819931 nonsynonymous SNV 0.994 3 40 hm6Am_associated_SNPs_184 0 0 1 0 1 MAZ chr16:29819891 3'AG 29819891 Downstream 41bp
123 chr22 24236756 24236756 1 + G A UCEC 24236752 + 24236732 24236772 41 CCCAGCAGCTGGCGCAGGCCACCGGCAAGCCCCCCCAGGTT CCCAGCAGCTGGCGCAGGCCACCGACAAGCCCCCCCAGGTT < 41bp 1 0.798405678375067 NA NA experiment 0.403188643249865 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control MIF ENSG00000240972 CDS Human protein_coding chr22:24236752 chr22:24236756 nonsynonymous SNV 0.996 1 25 hm6Am_associated_SNPs_185 0 0 1 0 1 MIF chr22:24236769 5'GT 24236769 Upstream 14bp
124 chr19 10939713 10939713 1 + C T UCEC 10939728 + 10939708 10939748 41 GCAGACGAAGGCCTTCATCCACCACGAGCTGCTGGCCTACC GCAGATGAAGGCCTTCATCCACCACGAGCTGCTGGCCTACC < 41bp 1 0.203957870157163 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10939728 chr19:10939713 nonsynonymous SNV 0.368 3 6 hm6Am_associated_SNPs_186 0 0 1 0 1 DNM2 chr19:10939712 3'AG 10939712 Downstream 2bp
125 chr1 116941626 116941626 1 + T G UCEC 116941620 + 116941600 116941640 41 CCAGTAACATTCCCGAGATCACCCCGTTCCTGATATTTATT CCAGTAACATTCCCGAGATCACCCCGGTCCTGATATTTATT < 41bp 1 0.173904291365097 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116941620 chr1:116941626 nonsynonymous SNV 0.995 4 27 hm6Am_associated_SNPs_188 0 0 1 0 2 ATP1A1 chr1:116941552 3'AG 116941552 Downstream 75bp
126 chr1 116941626 116941626 1 + T G UCEC 116941620 + 116941600 116941640 41 CCAGTAACATTCCCGAGATCACCCCGTTCCTGATATTTATT CCAGTAACATTCCCGAGATCACCCCGGTCCTGATATTTATT < 41bp 1 0.173904291365097 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116941620 chr1:116941626 nonsynonymous SNV 0.995 4 27 hm6Am_associated_SNPs_188 0 0 1 0 2 ATP1A1 chr1:116941706 5'GT 116941706 Upstream 81bp
127 chr16 29819924 29819924 1 + C T UCEC 29819912 + 29819892 29819932 41 AATGTGAGGCAGCTTTCGCCACGAAGGATCGGCTGCGGGCG AATGTGAGGCAGCTTTCGCCACGAAGGATCGGTTGCGGGCG < 41bp 1 0.582055917194095 NA NA experiment 0.835888165611811 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control MAZ ENSG00000103495 CDS Human protein_coding chr16:29819912 chr16:29819924 synonymous SNV . 0 33 hm6Am_associated_SNPs_190 0 0 1 0 1 MAZ chr16:29819891 3'AG 29819891 Downstream 34bp
128 chr4 95373093 95373093 1 + A C rs555460883 95373093 + 95373073 95373113 41 CGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTGTCTGAG CGGCGCCCTCACCGCGAGTCCCTTGTCAGCCCTTGTCTGAG Direct Loss 0.999523068562954 0 NA NA prediction 0.999046137125908 Functional Loss - PDLIM5 ENSG00000163110 UTR5 Human protein_coding chr4:95373093 chr4:95373093 . . 0 21 hm6Am_associated_SNPs_192 0 0 1 0 1 PDLIM5 chr4:95373146 5'GT 95373146 Upstream 54bp
129 chr9 124922207 124922207 1 + A C rs111689662 124922207 + 124922187 124922227 41 GTCATAGTGATGCCGTATCCACTGAGACTCCGGATCCTAAC GTCATAGTGATGCCGTATCCCCTGAGACTCCGGATCCTAAC Direct Loss 0.999149608884377 0 NA NA prediction 0.998299217768754 Functional Loss - MORN5 ENSG00000185681 UTR5 Human protein_coding chr9:124922207 chr9:124922207 . . 0 21 hm6Am_associated_SNPs_193 0 0 0 0 1 MORN5 chr9:124922298 5'GT 124922298 Upstream 92bp
130 chr1 26560734 26560734 1 + A G rs185062855 26560734 + 26560714 26560754 41 GAGGGAGGGAACCACCGCTCACCGCAGACGTGGTGGCTGCA GAGGGAGGGAACCACCGCTCGCCGCAGACGTGGTGGCTGCA Direct Loss 0.998232618329945 0 NA NA prediction 0.99646523665989 Functional Loss - CEP85 ENSG00000130695 UTR5 Human protein_coding chr1:26560734 chr1:26560734 . . 0 21 hm6Am_associated_SNPs_203 0 0 1 0 1 CEP85 chr1:26560801 5'GT 26560801 Upstream 68bp
131 chr11 118955716 118955716 1 + A C rs201349602 118955716 + 118955696 118955736 41 GGGGGACCTTAGCGGCACCCACACACAGCCTACTTTCCAAG GGGGGACCTTAGCGGCACCCCCACACAGCCTACTTTCCAAG Direct Loss 0.997875729403968 0 NA NA prediction 0.995751458807936 Functional Loss - HMBS ENSG00000256269 UTR5 Human protein_coding chr11:118955716 chr11:118955716 . . 0 21 hm6Am_associated_SNPs_207 1 0 1 0 1 HMBS chr11:118955776 5'GT 118955776 Upstream 61bp
132 chr11 63706504 63706504 1 + A G rs3903058 63706504 + 63706484 63706524 41 CTGCCGCCGCTGTTGCAGCCACCGCCGTTGCCGCCTCCCTG CTGCCGCCGCTGTTGCAGCCGCCGCCGTTGCCGCCTCCCTG Direct Loss 0.997649562960226 0 NA NA prediction 0.995299125920451 Functional Loss - NAA40 ENSG00000110583 UTR5 Human protein_coding chr11:63706504 chr11:63706504 . . 0 21 hm6Am_associated_SNPs_210 0 0 1 0 1 NAA40 chr11:63706574 5'GT 63706574 Upstream 71bp
133 chr2 61293116 61293116 1 + A G rs370607303 61293116 + 61293096 61293136 41 GAGCGCGGGCGGTGCCGACCACTGCAGGTAACAGAGGCGCT GAGCGCGGGCGGTGCCGACCGCTGCAGGTAACAGAGGCGCT Direct Loss 0.997569590084362 0 NA NA prediction 0.995139180168723 Functional Loss - KIAA1841 ENSG00000162929 UTR5 Human protein_coding chr2:61293116 chr2:61293116 . . 0 21 hm6Am_associated_SNPs_212 0 0 1 0 1 KIAA1841 chr2:61293162 5'GT 61293162 Upstream 47bp
134 chr4 39460706 39460706 1 + A G rs78325971 39460706 + 39460686 39460726 41 CCGGGAGTTAGCGATCCCTCAACCCCTGCACTGCGCTAGTC CCGGGAGTTAGCGATCCCTCGACCCCTGCACTGCGCTAGTC Direct Loss 0.997403099823077 0 NA NA prediction 0.994806199646153 Functional Loss - LIAS ENSG00000121897 UTR5 Human protein_coding chr4:39460706 chr4:39460706 . . 0 21 hm6Am_associated_SNPs_216 0 0 1 0 1 LIAS chr4:39460782 5'GT 39460782 Upstream 77bp
135 chr3 25831594 25831594 1 + A C rs41285081 25831594 + 25831574 25831614 41 CGCGTGCGCTCGAGAGCGTCATCGCCCCCGACTGTGGAGAA CGCGTGCGCTCGAGAGCGTCCTCGCCCCCGACTGTGGAGAA Direct Loss 0.997334824593401 0 NA NA prediction 0.994669649186802 Functional Loss - OXSM ENSG00000151093 UTR5 Human protein_coding chr3:25831594 chr3:25831594 . . 0 21 hm6Am_associated_SNPs_222 0 0 1 0 1 OXSM chr3:25831638 5'GT 25831638 Upstream 45bp
136 chr22 46663887 46663887 1 + A C rs112960550 46663887 + 46663867 46663907 41 CGACCGCCCCGCCCACTCCCAGGAAGGCCCGGGTGCCCAGA CGACCGCCCCGCCCACTCCCCGGAAGGCCCGGGTGCCCAGA Direct Loss 0.997093939141742 0 NA NA prediction 0.994187878283483 Functional Loss - TTC38 ENSG00000075234 UTR5 Human protein_coding chr22:46663887 chr22:46663887 . . 0 21 hm6Am_associated_SNPs_226 0 0 0 0 1 TTC38 chr22:46663969 5'GT 46663969 Upstream 83bp
137 chr17 60501364 60501364 1 + A G UCEC 60501364 + 60501344 60501384 41 TCCGGCGCGCGTCTTCCACCACAATGCCTGGTAATCACTCT TCCGGCGCGCGTCTTCCACCGCAATGCCTGGTAATCACTCT Direct Loss 0.996238458049682 0 NA NA prediction 0.992476916099364 Functional Loss - METTL2A ENSG00000087995 CDS Human protein_coding chr17:60501364 chr17:60501364 nonsynonymous SNV 0.996 2 21 hm6Am_associated_SNPs_243 0 0 1 0 1 METTL2A chr17:60501373 5'GT 60501373 Upstream 10bp
138 chr2 148602221 148602221 1 + A G rs542380518 148602221 + 148602201 148602241 41 GCCGCAGCCGCCTCGCCGCCACCGCCGCGAGCTCGGCCGCC GCCGCAGCCGCCTCGCCGCCGCCGCCGCGAGCTCGGCCGCC Direct Loss 0.996190825928772 0 NA NA prediction 0.992381651857544 Functional Loss - ACVR2A ENSG00000121989 UTR5 Human protein_coding chr2:148602221 chr2:148602221 . . 0 21 hm6Am_associated_SNPs_244 0 0 1 0 1 ACVR2A chr2:148602275 5'GT 148602275 Upstream 55bp
139 chr6 126277965 126277965 1 + A G rs561897941 126277965 + 126277945 126277985 41 CTCCGGCTTTGAAGTTCCTCACCGCGTCTCCTTCCCTCTCC CTCCGGCTTTGAAGTTCCTCGCCGCGTCTCCTTCCCTCTCC Direct Loss 0.996147886514598 0 NA NA prediction 0.992295773029197 Functional Loss - HINT3 ENSG00000111911 UTR5 Human protein_coding chr6:126277965 chr6:126277965 . . 0 21 hm6Am_associated_SNPs_248 0 0 1 0 1 HINT3 chr6:126278034 5'GT 126278034 Upstream 70bp
140 chr3 136538019 136538019 1 + A G rs562742581 136538019 + 136537999 136538039 41 GGCGAGGGCACGCCCGCGTCAGTCGCCTCCGGGGCACCTTC GGCGAGGGCACGCCCGCGTCGGTCGCCTCCGGGGCACCTTC Direct Loss 0.995882900185388 0 NA NA prediction 0.991765800370776 Functional Loss - SLC35G2 ENSG00000168917 UTR5 Human protein_coding chr3:136538019 chr3:136538019 . . 0 21 hm6Am_associated_SNPs_253 0 0 0 0 1 SLC35G2 chr3:136538056 5'GT 136538056 Upstream 38bp
141 chr1 153963263 153963263 1 + A C rs115756915 153963263 + 153963243 153963283 41 CCGGCGGTGACGACCTACGCACACGAGAACATGCCTGTGAG CCGGCGGTGACGACCTACGCCCACGAGAACATGCCTGTGAG Direct Loss 0.995643575600505 0 NA NA prediction 0.991287151201009 Functional Loss - RPS27 ENSG00000177954 UTR5 Human protein_coding chr1:153963263 chr1:153963263 . . 0 21 hm6Am_associated_SNPs_263 0 0 1 0 1 RPS27 chr1:153963278 5'GT 153963278 Upstream 16bp
142 chr16 50186857 50186857 1 + A G rs559704335 50186857 + 50186837 50186877 41 CTCCCTGCGGGGCGGGCGGCAACCTCCATGCGGCCTCGTCC CTCCCTGCGGGGCGGGCGGCGACCTCCATGCGGCCTCGTCC Direct Loss 0.995603527138677 0 NA NA prediction 0.991207054277353 Functional Loss - PAPD5 ENSG00000121274 UTR5 Human protein_coding chr16:50186857 chr16:50186857 . . 0 21 hm6Am_associated_SNPs_265 0 0 0 0 1 PAPD5 chr16:50186943 5'GT 50186943 Upstream 87bp
143 chr1 26737335 26737335 1 + A C rs201666290 26737335 + 26737315 26737355 41 CTTCGGACTTCTCCGGGGCCAGCAGCCGCCCGACCAGGGGC CTTCGGACTTCTCCGGGGCCCGCAGCCGCCCGACCAGGGGC Direct Loss 0.995535666506549 0 NA NA prediction 0.991071333013099 Functional Loss - LIN28A ENSG00000131914 UTR5 Human protein_coding chr1:26737335 chr1:26737335 . . 0 21 hm6Am_associated_SNPs_267 0 0 1 0 1 LIN28A chr1:26737413 5'GT 26737413 Upstream 79bp
144 chr14 54863725 54863725 1 + A C rs569523535 54863725 + 54863705 54863745 41 GGCGCGGGCTCGGCCGGGGCACCGGTGAGTCGCCGGCGCTG GGCGCGGGCTCGGCCGGGGCCCCGGTGAGTCGCCGGCGCTG Direct Loss 0.995271512462369 0 NA NA prediction 0.990543024924738 Functional Loss - CDKN3 ENSG00000100526 UTR5 Human protein_coding chr14:54863725 chr14:54863725 . . 0 21 hm6Am_associated_SNPs_272 0 0 1 0 1 CDKN3 chr14:54863795 5'GT 54863795 Upstream 71bp
145 chr2 228190065 228190065 1 + A G rs7588961 228190065 + 228190045 228190085 41 CTCCGTGCTCTCAGCCAACCACCTCTGAGAGCGCCCACTCG CTCCGTGCTCTCAGCCAACCGCCTCTGAGAGCGCCCACTCG Direct Loss 0.995122016994641 0 NA NA prediction 0.990244033989281 Functional Loss - MFF ENSG00000168958 UTR5 Human protein_coding chr2:228190065 chr2:228190065 . . 0 21 hm6Am_associated_SNPs_278 0 0 1 0 1 MFF chr2:228190143 5'GT 228190143 Upstream 79bp
146 chr1 43855608 43855608 1 + A T rs201261624 43855608 + 43855588 43855628 41 GTCAAGAGTGGAACACCCTCACTGGCCCGGGCCGGCGCGGG GTCAAGAGTGGAACACCCTCTCTGGCCCGGGCCGGCGCGGG Direct Loss 0.99505900733391 0 NA NA prediction 0.990118014667821 Functional Loss - SZT2 ENSG00000198198 UTR5 Human protein_coding chr1:43855608 chr1:43855608 . . 0 21 hm6Am_associated_SNPs_280 0 0 1 0 1 SZT2 chr1:43855666 5'GT 43855666 Upstream 59bp
147 chr16 72821636 72821636 1 + A G rs544296333 72821636 + 72821616 72821656 41 CCACCGCCGCCGCCGCCGCCACTGCCACCGCCGCCGCCGCC CCACCGCCGCCGCCGCCGCCGCTGCCACCGCCGCCGCCGCC Direct Loss 0.995041701798837 0 NA NA prediction 0.990083403597674 Functional Loss - ZFHX3 ENSG00000140836 CDS Human protein_coding chr16:72821636 chr16:72821636 synonymous SNV . 0 21 hm6Am_associated_SNPs_281 0 0 1 0 1 ZFHX3 chr16:72821562 3'AG 72821562 Downstream 75bp
148 chr11 66360730 66360730 1 + A T rs75550902 66360730 + 66360710 66360750 41 TCGGGGTGGTGACTGGGTCCAGAATGGCTTCGGATTCGGGG TCGGGGTGGTGACTGGGTCCTGAATGGCTTCGGATTCGGGG Direct Loss 0.995016431845563 0 NA NA prediction 0.990032863691126 Functional Loss - CCS ENSG00000173992 UTR5 Human protein_coding chr11:66360730 chr11:66360730 . . 0 21 hm6Am_associated_SNPs_282 0 0 1 0 1 CCS chr11:66360771 5'GT 66360771 Upstream 42bp
149 chr2 206950704 206950704 1 - T A rs538194214 206950704 - 206950684 206950724 41 GCAGCCGAGCTTCCTAGTCCATTGCCAGCGCCTCTCACTCT GCAGCCGAGCTTCCTAGTCCTTTGCCAGCGCCTCTCACTCT Direct Loss 0.994967966749899 0 NA NA prediction 0.989935933499797 Functional Loss - INO80D ENSG00000227946 ncRNA_exonic Human lincRNA chr2:206950704 chr2:206950704 . . 0 21 hm6Am_associated_SNPs_285 0 0 0 0 1 INO80D chr2:206950625 5'GT 206950625 Upstream 80bp
150 chr6 96025446 96025446 1 + A C rs9320526 96025446 + 96025426 96025466 41 CTCGGGGCGCGGCGGCAGTCAGCTCTATGTTCGCGGTCTTA CTCGGGGCGCGGCGGCAGTCCGCTCTATGTTCGCGGTCTTA Direct Loss 0.994922650876279 0 NA NA prediction 0.989845301752558 Functional Loss - MANEA ENSG00000172469 UTR5 Human protein_coding chr6:96025446 chr6:96025446 . . 0 21 hm6Am_associated_SNPs_286 0 0 1 0 1 MANEA chr6:96025514 5'GT 96025514 Upstream 69bp
151 chr19 16296241 16296241 1 + A C rs146095719 16296241 + 16296221 16296261 41 GGCACTCCAGCTACCGAAGCACTGGAGAGTGTCATGGAGGC GGCACTCCAGCTACCGAAGCCCTGGAGAGTGTCATGGAGGC Direct Loss 0.994745188371234 0 NA NA prediction 0.989490376742467 Functional Loss - FAM32A ENSG00000105058 UTR5 Human protein_coding chr19:16296241 chr19:16296241 . . 0 21 hm6Am_associated_SNPs_292 0 0 1 0 1 FAM32A chr19:16296327 5'GT 16296327 Upstream 87bp
152 chr16 54966061 54966061 1 + A G UCEC 54966061 + 54966041 54966081 41 GCCGAGCGCGGAGTCGCCTCAGTTGCCCAGGCCTCTATCTG GCCGAGCGCGGAGTCGCCTCGGTTGCCCAGGCCTCTATCTG Direct Loss 0.994671100326467 0 NA NA prediction 0.989342200652934 Functional Loss - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54966061 chr16:54966061 synonymous SNV . 0 21 hm6Am_associated_SNPs_298 0 0 0 0 2 IRX5 chr16:54965966 3'AG 54965966 Downstream 96bp
153 chr16 54966061 54966061 1 + A G UCEC 54966061 + 54966041 54966081 41 GCCGAGCGCGGAGTCGCCTCAGTTGCCCAGGCCTCTATCTG GCCGAGCGCGGAGTCGCCTCGGTTGCCCAGGCCTCTATCTG Direct Loss 0.994671100326467 0 NA NA prediction 0.989342200652934 Functional Loss - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54966061 chr16:54966061 synonymous SNV . 0 21 hm6Am_associated_SNPs_298 0 0 0 0 2 IRX5 chr16:54966121 5'GT 54966121 Upstream 61bp
154 chr6 34759881 34759881 1 + A C rs13215181 34759881 + 34759861 34759901 41 TGGCGGAGCGCCAGGCGCCCAAAGAGGGGCGAGAAAGCGCC TGGCGGAGCGCCAGGCGCCCCAAGAGGGGCGAGAAAGCGCC Direct Loss 0.994648957888385 0 NA NA prediction 0.989297915776771 Functional Loss - UHRF1BP1 ENSG00000065060 UTR5 Human protein_coding chr6:34759881 chr6:34759881 . . 0 21 hm6Am_associated_SNPs_301 0 0 1 0 1 UHRF1BP1 chr6:34759945 5'GT 34759945 Upstream 65bp
155 chr1 45241254 45241254 1 + A G rs550212070 45241254 + 45241234 45241274 41 TCTTTGCGGTTTCTCTTTCCAGCCAGCGCCGAGCGATGGGT TCTTTGCGGTTTCTCTTTCCGGCCAGCGCCGAGCGATGGGT Direct Loss 0.994619456349027 0 NA NA prediction 0.989238912698055 Functional Loss - RPS8 ENSG00000225721 ncRNA_exonic Human protein_coding chr1:45241254 chr1:45241254 . . 0 21 hm6Am_associated_SNPs_302 0 0 1 0 1 RPS8 chr1:45241272 5'GT 45241272 Upstream 19bp
156 chr1 22979753 22979753 1 + A G rs545766908 22979753 + 22979733 22979773 41 GGCTCTCGGCTCCTGGTCCCACTGCTGCTCAGCCCAGTGGC GGCTCTCGGCTCCTGGTCCCGCTGCTGCTCAGCCCAGTGGC Direct Loss 0.994606020883537 0 NA NA prediction 0.989212041767073 Functional Loss - C1QB ENSG00000173369 UTR5 Human protein_coding chr1:22979753 chr1:22979753 . . 0 21 hm6Am_associated_SNPs_303 0 0 0 0 1 C1QB chr1:22979796 5'GT 22979796 Upstream 44bp
157 chr18 9475161 9475161 1 + A C rs72936464 9475161 + 9475141 9475181 41 GCCCGCGAGCCACCTTCGCCAGCACCACACCGGGGTAAGCC GCCCGCGAGCCACCTTCGCCCGCACCACACCGGGGTAAGCC Direct Loss 0.994463123454533 0 NA NA prediction 0.988926246909066 Functional Loss - RALBP1 ENSG00000017797 UTR5 Human protein_coding chr18:9475161 chr18:9475161 . . 0 21 hm6Am_associated_SNPs_307 0 0 0 0 1 RALBP1 chr18:9475174 5'GT 9475174 Upstream 14bp
158 chr18 47901479 47901479 1 + A G rs138017059 47901479 + 47901459 47901499 41 TGCTTACAGAGTCCCGTCTCACCATCCTGGGCTTCCAACGG TGCTTACAGAGTCCCGTCTCGCCATCCTGGGCTTCCAACGG Direct Loss 0.994448424899395 0 NA NA prediction 0.98889684979879 Functional Loss - SKA1 ENSG00000154839 UTR5 Human protein_coding chr18:47901479 chr18:47901479 . . 0 21 hm6Am_associated_SNPs_308 0 0 1 0 1 SKA1 chr18:47901564 5'GT 47901564 Upstream 86bp
159 chr3 40498933 40498933 1 + A G rs4973904 40498933 + 40498913 40498953 41 CGCTGGGAAGCTGAGGCGCCAAACGGCTCCCAGAGGGTCCC CGCTGGGAAGCTGAGGCGCCGAACGGCTCCCAGAGGGTCCC Direct Loss 0.994011756822083 0 NA NA prediction 0.988023513644166 Functional Loss - RPL14 ENSG00000188846 UTR5 Human protein_coding chr3:40498933 chr3:40498933 . . 0 21 hm6Am_associated_SNPs_320 0 0 1 0 1 RPL14 chr3:40498965 5'GT 40498965 Upstream 33bp
160 chr8 30601707 30601707 1 + A G rs189910554 30601707 + 30601687 30601727 41 CACCAGGCGCTTCCGCCACCATGGCTTCACGTGGGGTTGTT CACCAGGCGCTTCCGCCACCGTGGCTTCACGTGGGGTTGTT Direct Loss 0.993854849296284 0 NA NA prediction 0.987709698592568 Functional Loss - UBXN8 ENSG00000104691 ncRNA_exonic Human protein_coding chr8:30601707 chr8:30601707 . 0.473 2 21 hm6Am_associated_SNPs_325 0 0 1 0 1 UBXN8 chr8:30601794 5'GT 30601794 Upstream 88bp
161 chr10 75255561 75255561 1 + A G UCEC 75255561 + 75255541 75255581 41 CAGGGTTTCGTCCACCTCTCACCTTTGACGACGCGGTCAGC CAGGGTTTCGTCCACCTCTCGCCTTTGACGACGCGGTCAGC Direct Loss 0.993503464504162 0 NA NA prediction 0.987006929008324 Functional Loss - PPP3CB-AS1;PPP3CB ENSG00000221817;ENSG00000107758 ncRNA_exonic;splicing Human protein_coding chr10:75255561 chr10:75255561 . 1.000 0 21 hm6Am_associated_SNPs_332 0 0 0 0 1 PPP3CB chr10:75255575 5'GT 75255575 Upstream 15bp
162 chr3 160939118 160939118 1 + A G rs528804417 160939118 + 160939098 160939138 41 TCTCTGTGGCGGAGACAGCCAGGTTGGCAGCTGACGGGACA TCTCTGTGGCGGAGACAGCCGGGTTGGCAGCTGACGGGACA Direct Loss 0.993147696504158 0 NA NA prediction 0.986295393008316 Functional Loss - NMD3 ENSG00000169251 UTR5 Human protein_coding chr3:160939118 chr3:160939118 . . 0 21 hm6Am_associated_SNPs_340 0 0 1 0 1 NMD3 chr3:160939197 5'GT 160939197 Upstream 80bp
163 chr4 186131342 186131342 1 + A C rs4323150 186131342 + 186131322 186131362 41 CTGCCGGAGCCCGCGCGCCCAGCCGCCCGACTTCGCCGCCG CTGCCGGAGCCCGCGCGCCCCGCCGCCCGACTTCGCCGCCG Direct Loss 0.992941158843715 0 NA NA prediction 0.985882317687429 Functional Loss - SNX25 ENSG00000109762 UTR5 Human protein_coding chr4:186131342 chr4:186131342 . . 0 21 hm6Am_associated_SNPs_345 0 0 1 0 1 SNX25 chr4:186131409 5'GT 186131409 Upstream 68bp
164 chr1 35220730 35220730 1 + A G rs2275229 35220730 + 35220710 35220750 41 CGCTTCTGGATATGAAATTCAAGCTGCTTGCTGAGTCCTAT CGCTTCTGGATATGAAATTCGAGCTGCTTGCTGAGTCCTAT Direct Loss 0.992907419186965 0 NA NA prediction 0.985814838373931 Functional Loss - GJB5 ENSG00000189280 UTR5 Human protein_coding chr1:35220730 chr1:35220730 . . 0 21 hm6Am_associated_SNPs_346 0 0 0 0 1 GJB5 chr1:35220796 5'GT 35220796 Upstream 67bp
165 chr2 175260500 175260500 1 + A T LUAD 175260500 + 175260480 175260520 41 AACTGATGCCTCCACTGGCCACTCCTCCCTCCGTCCACCTG AACTGATGCCTCCACTGGCCTCTCCTCCCTCCGTCCACCTG Direct Loss 0.992734711478867 0 NA NA prediction 0.985469422957735 Functional Loss - SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175260500 chr2:175260500 nonsynonymous SNV 0.000 0 21 hm6Am_associated_SNPs_352 0 0 1 0 1 SCRN3 chr2:175260545 5'GT 175260545 Upstream 46bp
166 chr11 2421998 2421998 1 + A G rs191098327 2421998 + 2421978 2422018 41 ACGGAGGTGCGGCGCCGACCAAGATGGAGACTGCCGAGCAG ACGGAGGTGCGGCGCCGACCGAGATGGAGACTGCCGAGCAG Direct Loss 0.992534643636678 0 NA NA prediction 0.985069287273356 Functional Loss - TSSC4 ENSG00000184281 UTR5 Human protein_coding chr11:2421998 chr11:2421998 . . 0 21 hm6Am_associated_SNPs_353 0 0 0 0 1 TSSC4 chr11:2422028 5'GT 2422028 Upstream 31bp
167 chr15 27112170 27112170 1 + A G rs25411 27112170 + 27112150 27112190 41 CCCAGCTCGGCCAAGGGCGCATTTGCTGAGCGTCTGGCGGC CCCAGCTCGGCCAAGGGCGCGTTTGCTGAGCGTCTGGCGGC Direct Loss 0.992172628429977 0 NA NA prediction 0.984345256859954 Functional Loss - GABRA5 ENSG00000186297 UTR5 Human protein_coding chr15:27112170 chr15:27112170 . . 0 21 hm6Am_associated_SNPs_360 0 0 0 0 1 GABRA5 chr15:27112258 5'GT 27112258 Upstream 89bp
168 chr5 140027416 140027416 1 + A C rs185280379 140027416 + 140027396 140027436 41 GTGGGTTGATTCTGAGGTGCACTGTGGGAAAGAGCTTGTCG GTGGGTTGATTCTGAGGTGCCCTGTGGGAAAGAGCTTGTCG Direct Loss 0.992166972683067 0 NA NA prediction 0.984333945366133 Functional Loss - IK ENSG00000113141 UTR5 Human protein_coding chr5:140027416 chr5:140027416 . . 0 21 hm6Am_associated_SNPs_361 0 0 1 0 1 IK chr5:140027509 5'GT 140027509 Upstream 94bp
169 chr5 65018154 65018154 1 + A C rs536374883 65018154 + 65018134 65018174 41 GCCGCCCGCCTCGCCGCCCCACGCCGAAGGACCACGCGCCC GCCGCCCGCCTCGCCGCCCCCCGCCGAAGGACCACGCGCCC Direct Loss 0.992005580644201 0 NA NA prediction 0.984011161288403 Functional Loss - NLN ENSG00000123213 UTR5 Human protein_coding chr5:65018154 chr5:65018154 . . 0 21 hm6Am_associated_SNPs_366 0 0 1 0 1 NLN chr5:65018241 5'GT 65018241 Upstream 88bp
170 chr3 195635455 195635455 1 - T C rs73891175 195635455 - 195635435 195635475 41 ACCGCTGAGCTCTGGGAGCCACTGCCTGAGGGCAGGCCGCG ACCGCTGAGCTCTGGGAGCCGCTGCCTGAGGGCAGGCCGCG Direct Loss 0.991863461214971 0 NA NA prediction 0.983726922429943 Functional Loss - TNK2-AS1 ENSG00000224614 ncRNA_exonic Human antisense chr3:195635455 chr3:195635455 . . 0 21 hm6Am_associated_SNPs_370 0 0 1 0 1 TNK2-AS1 chr3:195635356 5'GT 195635356 Upstream 100bp
171 chr18 32556947 32556947 1 + A T rs562816877 32556947 + 32556927 32556967 41 GCGGTGGCAGACTGCGAGTCACGTGCGACAGAGGAGGCGGA GCGGTGGCAGACTGCGAGTCTCGTGCGACAGAGGAGGCGGA Direct Loss 0.991797804438349 0 NA NA prediction 0.983595608876698 Functional Loss - MAPRE2 ENSG00000166974 UTR5 Human protein_coding chr18:32556947 chr18:32556947 . . 0 21 hm6Am_associated_SNPs_374 0 0 0 0 1 MAPRE2 chr18:32557043 5'GT 32557043 Upstream 97bp
172 chr15 59280222 59280222 1 + A C rs79043409 59280222 + 59280202 59280242 41 TCTGTCTTCCTTCCTGGGTCAGTGATTCCCGGACCCTGGAA TCTGTCTTCCTTCCTGGGTCCGTGATTCCCGGACCCTGGAA Direct Loss 0.991622012698347 0 NA NA prediction 0.983244025396694 Functional Loss - RNF111 ENSG00000157450 UTR5 Human protein_coding chr15:59280222 chr15:59280222 . . 0 21 hm6Am_associated_SNPs_377 0 0 1 0 1 RNF111 chr15:59280267 5'GT 59280267 Upstream 46bp
173 chr19 17830356 17830356 1 + A G rs200898303 17830356 + 17830336 17830376 41 GCTGCCGCGGCTCCGAGCTCACTGCTCCTCGTGGTGGGCAG GCTGCCGCGGCTCCGAGCTCGCTGCTCCTCGTGGTGGGCAG Direct Loss 0.991599161008737 0 NA NA prediction 0.983198322017474 Functional Loss - MAP1S ENSG00000130479 CDS Human protein_coding chr19:17830356 chr19:17830356 synonymous SNV . 0 21 hm6Am_associated_SNPs_378 0 0 1 0 1 MAP1S chr19:17830429 5'GT 17830429 Upstream 74bp
174 chr2 217277330 217277330 1 + A G rs115172989 217277330 + 217277310 217277350 41 CTGCAGTCGCGCCTGGGGTCAGGGCCGGGGGCGAATGTGGC CTGCAGTCGCGCCTGGGGTCGGGGCCGGGGGCGAATGTGGC Direct Loss 0.991363643400083 0 NA NA prediction 0.982727286800165 Functional Loss - SMARCAL1 ENSG00000235042 ncRNA_exonic Human antisense chr2:217277330 chr2:217277330 . . 0 21 hm6Am_associated_SNPs_386 1 0 1 0 1 SMARCAL1 chr2:217277371 5'GT 217277371 Upstream 42bp
175 chr1 156339153 156339153 1 + A G UCEC 156339153 + 156339133 156339173 41 TGTCTTTGTCCGCTACAACCACAAAACCGACGCTGCCCTCT TGTCTTTGTCCGCTACAACCGCAAAACCGACGCTGCCCTCT Direct Loss 0.991305467225187 0 NA NA prediction 0.982610934450374 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156339153 chr1:156339153 nonsynonymous SNV 0.999 0 21 hm6Am_associated_SNPs_387 0 0 0 0 1 RHBG chr1:156339227 5'GT 156339227 Upstream 75bp
176 chr2 120436773 120436773 1 + A G rs2272053 120436773 + 120436753 120436793 41 GCGGCCGCCCTGCCGCGCGCACATGTAGGCGTTCCGAGCGG GCGGCCGCCCTGCCGCGCGCGCATGTAGGCGTTCCGAGCGG Direct Loss 0.991217587296572 0 NA NA prediction 0.982435174593144 Functional Loss - TMEM177 ENSG00000144120 UTR5 Human protein_coding chr2:120436773 chr2:120436773 . . 0 21 hm6Am_associated_SNPs_389 0 0 1 0 2 TMEM177 chr2:120436801 5'GT 120436801 Upstream 29bp
177 chr2 120436773 120436773 1 + A G rs2272053 120436773 + 120436753 120436793 41 GCGGCCGCCCTGCCGCGCGCACATGTAGGCGTTCCGAGCGG GCGGCCGCCCTGCCGCGCGCGCATGTAGGCGTTCCGAGCGG Direct Loss 0.991217587296572 0 NA NA prediction 0.982435174593144 Functional Loss - TMEM177 ENSG00000144120 UTR5 Human protein_coding chr2:120436773 chr2:120436773 . . 0 21 hm6Am_associated_SNPs_389 0 0 1 0 2 TMEM177 chr2:120436852 5'GT 120436852 Upstream 80bp
178 chr12 122688256 122688256 1 + A C rs61955587 122688256 + 122688236 122688276 41 CTCCTCCAGAAGCCCCGCCCACTCCCGAGCCCCGAGAGCTC CTCCTCCAGAAGCCCCGCCCCCTCCCGAGCCCCGAGAGCTC Direct Loss 0.991065819267264 0 NA NA prediction 0.982131638534528 Functional Loss - B3GNT4 ENSG00000176383 UTR5 Human protein_coding chr12:122688256 chr12:122688256 . . 0 21 hm6Am_associated_SNPs_393 0 0 0 0 1 B3GNT4 chr12:122688348 5'GT 122688348 Upstream 93bp
179 chr20 2361613 2361613 1 + A G rs80329336 2361613 + 2361593 2361633 41 GAGGAGTCCAGCTGGCCTTCACATGGCAGGTAAGTGGGCAG GAGGAGTCCAGCTGGCCTTCGCATGGCAGGTAAGTGGGCAG Direct Loss 0.990852434710088 0 NA NA prediction 0.981704869420177 Functional Loss - TGM6 ENSG00000166948 UTR5 Human protein_coding chr20:2361613 chr20:2361613 . . 0 21 hm6Am_associated_SNPs_400 1 0 0 0 1 TGM6 chr20:2361621 5'GT 2361621 Upstream 9bp
180 chr19 50270389 50270389 1 + T G STAD 50270391 + 50270371 50270411 41 GAGCCGACACCACCGCCATCATGCCGGCCGTGTCCAAGGGC GAGCCGACACCACCGCCAGCATGCCGGCCGTGTCCAAGGGC < 41bp 0.8591530884672 0.503799789993215 NA NA prediction 0.71070659694797 Functional Loss - AP2A1 ENSG00000196961 UTR5 Human protein_coding chr19:50270391 chr19:50270389 . . 0 19 hm6Am_associated_SNPs_402 0 0 1 0 1 AP2A1 chr19:50270457 5'GT 50270457 Upstream 69bp
181 chr16 2983895 2983895 1 + T G rs539929256 2983897 + 2983877 2983917 41 GGTGACTGTCATGCGTGGTCACTGCCACCCGCCCGACCTGG GGTGACTGTCATGCGTGGGCACTGCCACCCGCCCGACCTGG < 41bp 0.852167663386825 0.492082210373239 NA NA prediction 0.70433532677365 Functional Loss - FLYWCH1 ENSG00000059122 CDS Human protein_coding chr16:2983897 chr16:2983895 synonymous SNV . 0 19 hm6Am_associated_SNPs_404 0 0 0 0 1 FLYWCH1 chr16:2983980 5'GT 2983980 Upstream 86bp
182 chr14 39644569 39644569 1 + T G UCEC 39644571 + 39644551 39644591 41 ATGAGAACATTCGCAAGCTCACCGGGCGGGATCCGAATGAC ATGAGAACATTCGCAAGCGCACCGGGCGGGATCCGAATGAC < 41bp 0.84611888688667 0.475636740683278 NA NA prediction 0.69223777377334 Functional Loss - PNN ENSG00000100941 CDS Human protein_coding chr14:39644571 chr14:39644569 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_408 0 0 1 0 1 PNN chr14:39644596 5'GT 39644596 Upstream 28bp
183 chr10 75535249 75535249 1 + T G SKCM 75535251 + 75535231 75535271 41 CTCGGAAAAAGGCAGGACTCATAACTATGCTGCAGTTCCAT CTCGGAAAAAGGCAGGACGCATAACTATGCTGCAGTTCCAT < 41bp 0.866854919843767 0.525729744758722 NA NA prediction 0.682250350170091 Functional Loss - FUT11 ENSG00000196968 CDS Human protein_coding chr10:75535251 chr10:75535249 synonymous SNV . 0 19 hm6Am_associated_SNPs_415 0 0 0 0 1 FUT11 chr10:75535177 3'AG 75535177 Downstream 73bp
184 chr18 61575213 61575213 1 + T G rs17072065 61575215 + 61575195 61575235 41 TGAAAGTTTCTCAACTCTTCAGCCACAATCTCTTACTACAG TGAAAGTTTCTCAACTCTGCAGCCACAATCTCTTACTACAG < 41bp 0.856701706813591 0.518016763414952 NA NA prediction 0.677369886797278 Functional Loss - SERPINB10 ENSG00000242550 CDS Human protein_coding chr18:61575215 chr18:61575213 unknown . 0 19 hm6Am_associated_SNPs_416 0 0 0 0 1 SERPINB10 chr18:61575274 5'GT 61575274 Upstream 62bp
185 chr7 23224737 23224737 1 + T G LUSC 23224739 + 23224719 23224759 41 GCCAGAGATATTCCAATGTCATCCAGCCATCCAGTTTCTCC GCCAGAGATATTCCAATGGCATCCAGCCATCCAGTTTCTCC < 41bp 0.871996489996976 0.537075756834489 NA NA prediction 0.669841466324975 Functional Loss - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23224739 chr7:23224737 nonsynonymous SNV 0.364 2 19 hm6Am_associated_SNPs_420 0 0 1 0 1 NUPL2 chr7:23224689 3'AG 23224689 Downstream 49bp
186 chr10 81058831 81058831 1 + T G GBM 81058833 + 81058813 81058853 41 ACAATGACGAGCTGCGGCTCACATTCCCTGTGCGGGATGGC ACAATGACGAGCTGCGGCGCACATTCCCTGTGCGGGATGGC < 41bp 0.832453160101156 0.455022866818431 NA NA prediction 0.664906320202311 Functional Loss - ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:81058833 chr10:81058831 nonsynonymous SNV 0.998 3 19 hm6Am_associated_SNPs_423 0 0 1 0 1 ZMIZ1 chr10:81058807 3'AG 81058807 Downstream 25bp
187 chr2 103090436 103090436 1 + T G CESC 103090438 + 103090418 103090458 41 TGCAAATTCCTTATGAGGTCACTCTCTGGATACTTCTAGCA TGCAAATTCCTTATGAGGGCACTCTCTGGATACTTCTAGCA < 41bp 0.86983799475278 0.540862356163552 NA NA prediction 0.657951277178455 Functional Loss - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103090438 chr2:103090436 nonsynonymous SNV 0.998 2 19 hm6Am_associated_SNPs_428 0 0 0 0 1 SLC9A4 chr2:103090474 5'GT 103090474 Upstream 39bp
188 chr11 66026136 66026136 1 + T G HNSC 66026138 + 66026118 66026158 41 TGCTGGGCACCAAGGCTGTCATCCAGGGACTGGAGACTCTG TGCTGGGCACCAAGGCTGGCATCCAGGGACTGGAGACTCTG < 41bp 0.828317015844465 0.448996833994649 NA NA prediction 0.65663403168893 Functional Loss - KLC2 ENSG00000174996 CDS Human protein_coding chr11:66026138 chr11:66026136 nonsynonymous SNV 0.961 4 19 hm6Am_associated_SNPs_429 0 0 1 0 1 KLC2 chr11:66026055 3'AG 66026055 Downstream 82bp
189 chr1 154960019 154960019 1 + T G rs7528060 154960021 + 154960001 154960041 41 ACGGTTACTCCGGAGACATCAGAGCACTGTGGCTGGAGGCT ACGGTTACTCCGGAGACAGCAGAGCACTGTGGCTGGAGGCT < 41bp 0.82506912042971 0.44231565966757 NA NA prediction 0.650138240859421 Functional Loss - FLAD1 ENSG00000160688 UTR5 Human protein_coding chr1:154960021 chr1:154960019 . . 0 19 hm6Am_associated_SNPs_432 0 0 1 0 1 FLAD1 chr1:154959942 3'AG 154959942 Downstream 78bp
190 chr11 15243122 15243122 1 + C G rs375374527 15243124 + 15243104 15243144 41 GTGGCCCAGGTCACCTCCCCACACCTGCCCGTCACCCAGCA GTGGCCCAGGTCACCTCCGCACACCTGCCCGTCACCCAGCA < 41bp 0.82130662126453 0.49197838449183 NA NA prediction 0.642613242529061 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15243124 chr11:15243122 nonsynonymous SNV 0.997 4 19 hm6Am_associated_SNPs_442 0 0 0 0 2 INSC chr11:15243023 3'AG 15243023 Downstream 100bp
191 chr11 15243122 15243122 1 + C G rs375374527 15243124 + 15243104 15243144 41 GTGGCCCAGGTCACCTCCCCACACCTGCCCGTCACCCAGCA GTGGCCCAGGTCACCTCCGCACACCTGCCCGTCACCCAGCA < 41bp 0.82130662126453 0.49197838449183 NA NA prediction 0.642613242529061 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15243124 chr11:15243122 nonsynonymous SNV 0.997 4 19 hm6Am_associated_SNPs_442 0 0 0 0 2 INSC chr11:15243194 5'GT 15243194 Upstream 73bp
192 chr4 189065197 189065197 1 + C G UCEC 189065199 + 189065179 189065219 41 CTCTCTTGCAGGAGCGAGCCACTCTTGCTTCAGTGTCCAGA CTCTCTTGCAGGAGCGAGGCACTCTTGCTTCAGTGTCCAGA < 41bp 0.825847883555065 0.505312798059918 NA NA prediction 0.641070170990294 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189065199 chr4:189065197 nonsynonymous SNV 0.060 0 19 hm6Am_associated_SNPs_444 0 0 0 0 2 TRIML1 chr4:189065190 3'AG 189065190 Downstream 8bp
193 chr4 189065197 189065197 1 + C G UCEC 189065199 + 189065179 189065219 41 CTCTCTTGCAGGAGCGAGCCACTCTTGCTTCAGTGTCCAGA CTCTCTTGCAGGAGCGAGGCACTCTTGCTTCAGTGTCCAGA < 41bp 0.825847883555065 0.505312798059918 NA NA prediction 0.641070170990294 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189065199 chr4:189065197 nonsynonymous SNV 0.060 0 19 hm6Am_associated_SNPs_444 0 0 0 0 2 TRIML1 chr4:189065287 5'GT 189065287 Upstream 91bp
194 chr1 203274847 203274847 1 + T G DLBC 203274849 + 203274829 203274869 41 AGCAGAGGCTTAAGGTCTTCAGCGGGGCGCTCCAGGAGGCA AGCAGAGGCTTAAGGTCTGCAGCGGGGCGCTCCAGGAGGCA < 41bp 0.819928404771878 0.427092452000788 NA NA prediction 0.639856809543756 Functional Loss - BTG2 ENSG00000159388 CDS Human protein_coding chr1:203274849 chr1:203274847 nonsynonymous SNV 0.993 4 19 hm6Am_associated_SNPs_446 0 0 1 0 1 BTG2 chr1:203274876 5'GT 203274876 Upstream 30bp
195 chr20 42966032 42966032 1 + C G rs142022479 42966034 + 42966014 42966054 41 ATCCGGGCCAGTGTGTACCCACCTGCCGCCAACATGGAATA ATCCGGGCCAGTGTGTACGCACCTGCCGCCAACATGGAATA < 41bp 0.83155287200853 0.512171499759547 NA NA prediction 0.638762744497965 Functional Loss - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42966034 chr20:42966032 nonsynonymous SNV 0.952 4 19 hm6Am_associated_SNPs_448 0 0 0 0 1 R3HDML chr20:42966058 5'GT 42966058 Upstream 27bp
196 chr11 73366861 73366861 1 + C G THYM 73366863 + 73366843 73366883 41 AGCAGGCCCCAGCTGGAGCCACCGTCCCTCCCAGGAGCCGC AGCAGGCCCCAGCTGGAGGCACCGTCCCTCCCAGGAGCCGC < 41bp 0.818976060950569 0.494844792519223 NA NA prediction 0.637952121901137 Functional Loss - PLEKHB1 ENSG00000021300 CDS Human protein_coding chr11:73366863 chr11:73366861 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_449 0 0 0 0 2 PLEKHB1 chr11:73366848 3'AG 73366848 Downstream 14bp
197 chr11 73366861 73366861 1 + C G THYM 73366863 + 73366843 73366883 41 AGCAGGCCCCAGCTGGAGCCACCGTCCCTCCCAGGAGCCGC AGCAGGCCCCAGCTGGAGGCACCGTCCCTCCCAGGAGCCGC < 41bp 0.818976060950569 0.494844792519223 NA NA prediction 0.637952121901137 Functional Loss - PLEKHB1 ENSG00000021300 CDS Human protein_coding chr11:73366863 chr11:73366861 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_449 0 0 0 0 2 PLEKHB1 chr11:73366952 5'GT 73366952 Upstream 92bp
198 chr17 74076447 74076447 1 + C G HNSC 74076449 + 74076429 74076469 41 CTGCAACTTTGAGCTCCTCCACTTCCCCCGGGACCACAGCA CTGCAACTTTGAGCTCCTGCACTTCCCCCGGGACCACAGCA < 41bp 0.822717711949493 0.503856125202549 NA NA prediction 0.637723173493889 Functional Loss - ZACN ENSG00000186919 CDS Human protein_coding chr17:74076449 chr17:74076447 synonymous SNV . 0 19 hm6Am_associated_SNPs_451 0 0 0 0 1 ZACN chr17:74076505 5'GT 74076505 Upstream 59bp
199 chr17 16699409 16699409 1 + C G rs143888506 16699411 + 16699391 16699431 41 GGCGAGCGCAAGTCGAGCCCATCAACCTGGACAGCTGTCTC GGCGAGCGCAAGTCGAGCGCATCAACCTGGACAGCTGTCTC < 41bp 0.827006181759035 0.510590382990065 NA NA prediction 0.63283159753794 Functional Loss - USP32P1 ENSG00000188933;ENSG00000272815 ncRNA_exonic Human other chr17:16699411 chr17:16699409 . . 0 19 hm6Am_associated_SNPs_457 0 0 0 1 1 USP32P1 chr17:16699357 3'AG 16699357 Downstream 53bp
200 chr14 92900286 92900286 1 + C G LUAD 92900288 + 92900268 92900308 41 TCCCCACAGATCTGTTCTCCAATAAGGAGCGACAGCACGGA TCCCCACAGATCTGTTCTGCAATAAGGAGCGACAGCACGGA < 41bp 0.829739766201667 0.515322783895243 NA NA prediction 0.628833964612849 Functional Loss - SLC24A4 ENSG00000140090 CDS Human protein_coding chr14:92900288 chr14:92900286 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_466 0 0 0 0 2 SLC24A4 chr14:92900256 3'AG 92900256 Downstream 31bp
201 chr14 92900286 92900286 1 + C G LUAD 92900288 + 92900268 92900308 41 TCCCCACAGATCTGTTCTCCAATAAGGAGCGACAGCACGGA TCCCCACAGATCTGTTCTGCAATAAGGAGCGACAGCACGGA < 41bp 0.829739766201667 0.515322783895243 NA NA prediction 0.628833964612849 Functional Loss - SLC24A4 ENSG00000140090 CDS Human protein_coding chr14:92900288 chr14:92900286 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_466 0 0 0 0 2 SLC24A4 chr14:92900332 5'GT 92900332 Upstream 47bp
202 chr20 57876522 57876522 1 + C G BLCA 57876524 + 57876504 57876544 41 GCGGCGTGTCCCAGGCCCCCACTGCAGCCAGATCTGAGGGG GCGGCGTGTCCCAGGCCCGCACTGCAGCCAGATCTGAGGGG < 41bp 0.840102564721806 0.525725691453492 NA NA prediction 0.628753746536628 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57876524 chr20:57876522 nonsynonymous SNV 0.033 3 19 hm6Am_associated_SNPs_467 0 0 0 0 1 EDN3 chr20:57876465 3'AG 57876465 Downstream 58bp
203 chr7 130023282 130023282 1 + C G UCEC 130023284 + 130023264 130023304 41 CTGGATCGACACGGGCATCCATTCCCGGGAGTGGGTCACCC CTGGATCGACACGGGCATGCATTCCCGGGAGTGGGTCACCC < 41bp 0.83324917408956 0.519892230742032 NA NA prediction 0.626713886695056 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130023284 chr7:130023282 nonsynonymous SNV 0.998 4 19 hm6Am_associated_SNPs_470 0 0 0 0 2 CPA1 chr7:130023232 3'AG 130023232 Downstream 51bp
204 chr7 130023282 130023282 1 + C G UCEC 130023284 + 130023264 130023304 41 CTGGATCGACACGGGCATCCATTCCCGGGAGTGGGTCACCC CTGGATCGACACGGGCATGCATTCCCGGGAGTGGGTCACCC < 41bp 0.83324917408956 0.519892230742032 NA NA prediction 0.626713886695056 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130023284 chr7:130023282 nonsynonymous SNV 0.998 4 19 hm6Am_associated_SNPs_470 0 0 0 0 2 CPA1 chr7:130023333 5'GT 130023333 Upstream 52bp
205 chr17 41158974 41158974 1 + C G rs149119295 41158976 + 41158956 41158996 41 CCGAGACCCATGTCAGCCCCACTGGATGCCGTAAGTGAGGA CCGAGACCCATGTCAGCCGCACTGGATGCCGTAAGTGAGGA < 41bp 0.826511526790721 0.513476222542159 NA NA prediction 0.626070608497124 Functional Loss - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41158976 chr17:41158974 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_474 0 0 1 0 1 IFI35 chr17:41158985 5'GT 41158985 Upstream 12bp
206 chrX 153664068 153664068 1 + C G UCEC 153664070 + 153664050 153664090 41 GGGAGCAGTTCTCCTACGCCAGCGACTGTGCCAGCTTCTTC GGGAGCAGTTCTCCTACGGCAGCGACTGTGCCAGCTTCTTC < 41bp 0.829732611038261 0.516891150016532 NA NA prediction 0.625682922043458 Functional Loss - ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153664070 chrX:153664068 nonsynonymous SNV 0.842 4 19 hm6Am_associated_SNPs_475 0 0 1 0 1 ATP6AP1 chrX:153664028 3'AG 153664028 Downstream 41bp
207 chr12 121175948 121175948 1 + C G CESC 121175950 + 121175930 121175970 41 CTGAAGCCTGCACCTTCCCCAGAAGCCGGCAGAGGGTGTCA CTGAAGCCTGCACCTTCCGCAGAAGCCGGCAGAGGGTGTCA < 41bp 0.81280390847895 0.497086289156677 NA NA prediction 0.625607816957899 Functional Loss - ACADS ENSG00000122971 CDS Human protein_coding chr12:121175950 chr12:121175948 nonsynonymous SNV 0.008 1 19 hm6Am_associated_SNPs_476 0 0 0 0 2 ACADS chr12:121175852 3'AG 121175852 Downstream 97bp
208 chr12 121175948 121175948 1 + C G CESC 121175950 + 121175930 121175970 41 CTGAAGCCTGCACCTTCCCCAGAAGCCGGCAGAGGGTGTCA CTGAAGCCTGCACCTTCCGCAGAAGCCGGCAGAGGGTGTCA < 41bp 0.81280390847895 0.497086289156677 NA NA prediction 0.625607816957899 Functional Loss - ACADS ENSG00000122971 CDS Human protein_coding chr12:121175950 chr12:121175948 nonsynonymous SNV 0.008 1 19 hm6Am_associated_SNPs_476 0 0 0 0 2 ACADS chr12:121175991 5'GT 121175991 Upstream 44bp
209 chr20 26061884 26061884 1 + C G rs78196071 26061886 + 26061866 26061906 41 AACACGAAGTGGGGATCTCCACTTGGGGTGGTCAGCACTGC AACACGAAGTGGGGATCTGCACTTGGGGTGGTCAGCACTGC < 41bp 0.844143139631826 0.531742586635705 NA NA prediction 0.624801105992243 Functional Loss - FAM182A ENSG00000125804 ncRNA_exonic Human processed_transcript chr20:26061886 chr20:26061884 . . 0 19 hm6Am_associated_SNPs_479 0 0 0 0 1 FAM182A chr20:26061800 3'AG 26061800 Downstream 85bp
210 chr2 96040128 96040128 1 + C G LUAD 96040130 + 96040110 96040150 41 AGGCCCAGACCAAGTTCACCAAGAAGGAGCTGCAGTCTCTC AGGCCCAGACCAAGTTCAGCAAGAAGGAGCTGCAGTCTCTC < 41bp 0.832433216693988 0.520138880905627 NA NA prediction 0.624588671576723 Functional Loss - KCNIP3 ENSG00000115041 CDS Human protein_coding chr2:96040130 chr2:96040128 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_481 0 0 0 0 2 KCNIP3 chr2:96040044 3'AG 96040044 Downstream 85bp
211 chr2 96040128 96040128 1 + C G LUAD 96040130 + 96040110 96040150 41 AGGCCCAGACCAAGTTCACCAAGAAGGAGCTGCAGTCTCTC AGGCCCAGACCAAGTTCAGCAAGAAGGAGCTGCAGTCTCTC < 41bp 0.832433216693988 0.520138880905627 NA NA prediction 0.624588671576723 Functional Loss - KCNIP3 ENSG00000115041 CDS Human protein_coding chr2:96040130 chr2:96040128 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_481 0 0 0 0 2 KCNIP3 chr2:96040168 5'GT 96040168 Upstream 41bp
212 chr15 25430680 25430680 1 + T G ESCA 25430682 + 25430662 25430702 41 CCTCCCGTGCGCTAAAGCTCAGGTCCTTCCTGTCATCCTGG CCTCCCGTGCGCTAAAGCGCAGGTCCTTCCTGTCATCCTGG < 41bp 0.812014270025993 0.449402183299627 NA NA prediction 0.624028540051985 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25430682 chr15:25430680 . . 0 19 hm6Am_associated_SNPs_482 0 0 0 1 1 SNHG14 chr15:25430590 3'AG 25430590 Downstream 91bp
213 chr2 27346840 27346840 1 + C G KIRC 27346842 + 27346822 27346862 41 GAGCTCCTTCCTGAGCCCCCAGAATGGCACCTGGGCAGACA GAGCTCCTTCCTGAGCCCGCAGAATGGCACCTGGGCAGACA < 41bp 0.846471414451095 0.534708864114046 NA NA prediction 0.6235251006741 Functional Loss - ABHD1 ENSG00000143994 CDS Human protein_coding chr2:27346842 chr2:27346840 synonymous SNV . 0 19 hm6Am_associated_SNPs_484 0 0 0 1 1 ABHD1 chr2:27346930 5'GT 27346930 Upstream 91bp
214 chr15 25219558 25219558 1 + T G LUSC 25219560 + 25219540 25219580 41 CCTAGGTCTTCAGAAGCATCAAGTTTTAACTGTGGACATTG CCTAGGTCTTCAGAAGCAGCAAGTTTTAACTGTGGACATTG < 41bp 0.811215233990307 0.49329087791714 NA NA prediction 0.622430467980613 Functional Loss - SNHG14 ENSG00000128739;ENSG00000273173 UTR5;UTR3 Human protein_coding chr15:25219560 chr15:25219558 . . 0 19 hm6Am_associated_SNPs_487 0 0 1 2 1 SNRPN chr15:25219603 5'GT 25219603 Upstream 46bp
215 chr1 155295178 155295178 1 + C G ESCA 155295180 + 155295160 155295200 41 CACCCTCTGCCCGGCCCTCCACGCCCTGGTGGCGGACGGGC CACCCTCTGCCCGGCCCTGCACGCCCTGGTGGCGGACGGGC < 41bp 0.827587357113909 0.516585473678891 NA NA prediction 0.622003766870036 Functional Loss - RUSC1 ENSG00000160753 CDS Human protein_coding chr1:155295180 chr1:155295178 synonymous SNV . 0 19 hm6Am_associated_SNPs_488 0 0 1 0 1 RUSC1 chr1:155295107 3'AG 155295107 Downstream 72bp
216 chr12 108620802 108620802 1 + C G LUAD 108620804 + 108620784 108620824 41 TCTTGCAGGCACCGCCTGCCACTGTGGGTTTCCCACCACCC TCTTGCAGGCACCGCCTGGCACTGTGGGTTTCCCACCACCC < 41bp 0.846401978962309 0.53558182016549 NA NA prediction 0.621640317593638 Functional Loss - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108620804 chr12:108620802 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_489 0 0 0 0 1 WSCD2 chr12:108620767 3'AG 108620767 Downstream 36bp
217 chr1 161697058 161697058 1 + C G HNSC 161697060 + 161697040 161697080 41 CTCCCCTGGACCCGGCCTCCACCACCGCCCCAGCTCCATGG CTCCCCTGGACCCGGCCTGCACCACCGCCCCAGCTCCATGG < 41bp 0.809933118076088 0.48385522449089 NA NA prediction 0.619866236152176 Functional Loss - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161697060 chr1:161697058 nonsynonymous SNV 0.120 2 19 hm6Am_associated_SNPs_494 0 0 0 0 1 FCRLB chr1:161697037 3'AG 161697037 Downstream 22bp
218 chr8 7010282 7010282 1 + T G rs10094236 7010284 + 7010264 7010304 41 CCTGCCATCTTCATCGTTTCATTACCACCATCCAACACTAT CCTGCCATCTTCATCGTTGCATTACCACCATCCAACACTAT < 41bp 0.870992747389596 0.56109334621538 NA NA prediction 0.619798802348432 Functional Loss - DEFA5;LINC00965 ENSG00000254683;ENSG00000230106 intergenic Human other chr8:7010284 chr8:7010282 . . 0 19 hm6Am_associated_SNPs_495 0 0 0 0 1 DEFA5;LINC00965 chr8:7010328 5'GT 7010328 Upstream 47bp
219 chr1 166974517 166974517 1 + T G ESCA 166974519 + 166974499 166974539 41 GGCAAGATCTACAACTTCTCACTGTAGAGGACCTTGTAGTG GGCAAGATCTACAACTTCGCACTGTAGAGGACCTTGTAGTG < 41bp 0.80957410141689 0.419164188150822 NA NA prediction 0.61914820283378 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166974519 chr1:166974517 nonsynonymous SNV 0.997 0 19 hm6Am_associated_SNPs_498 0 0 0 3 1 MAEL chr1:166974493 3'AG 166974493 Downstream 25bp
220 chr5 177569748 177569748 1 + C G rs11956603 177569750 + 177569730 177569770 41 GTGAGCACGTGGCCGGCTCCAGGCGTGGGGTGGGAGCACCC GTGAGCACGTGGCCGGCTGCAGGCGTGGGGTGGGAGCACCC < 41bp 0.809698076308082 0.50029681424945 NA NA prediction 0.618802524117266 Functional Loss - RMND5B ENSG00000145916 intronic Human protein_coding chr5:177569750 chr5:177569748 . . 0 19 hm6Am_associated_SNPs_501 0 0 1 0 1 RMND5B chr5:177569729 3'AG 177569729 Downstream 20bp
221 chr12 72332773 72332773 1 + C G LUAD 72332775 + 72332755 72332795 41 ACACCGGGATCCATGCAGCCAGCAATGATGATGTTTTCCAG ACACCGGGATCCATGCAGGCAGCAATGATGATGTTTTCCAG < 41bp 0.821466499042932 0.51252166884933 NA NA prediction 0.617889660387204 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72332775 chr12:72332773 nonsynonymous SNV 0.998 3 19 hm6Am_associated_SNPs_504 0 0 1 0 1 TPH2 chr12:72332871 5'GT 72332871 Upstream 99bp
222 chr9 134165737 134165737 1 + T G UCEC 134165739 + 134165719 134165759 41 TGGTCAAGCTCATCGGCATCACGGGCCACGGCATCCCCTGG TGGTCAAGCTCATCGGCAGCACGGGCCACGGCATCCCCTGG < 41bp 0.808251843569343 0.417155693052816 NA NA prediction 0.616503687138686 Functional Loss - PLPP7 ENSG00000160539 CDS Human protein_coding chr9:134165739 chr9:134165737 nonsynonymous SNV 0.998 2 19 hm6Am_associated_SNPs_507 0 0 0 0 1 PLPP7 chr9:134165835 5'GT 134165835 Upstream 99bp
223 chr9 139994227 139994227 1 + C G UCEC 139994229 + 139994209 139994249 41 CCGCAAGTTTGCATGGGGCCATGACGAGCTGAAGCCTGTGT CCGCAAGTTTGCATGGGGGCATGACGAGCTGAAGCCTGTGT < 41bp 0.807445456177023 0.489010468105838 NA NA prediction 0.614890912354047 Functional Loss - MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:139994229 chr9:139994227 synonymous SNV . 0 19 hm6Am_associated_SNPs_509 0 0 1 0 1 MAN1B1 chr9:139994148 3'AG 139994148 Downstream 80bp
224 chr3 9974296 9974296 1 + C G BLCA 9974298 + 9974278 9974318 41 TCTGGGTCTCCCAGACATCCACAAGCGCTGGGCCCTCGTGT TCTGGGTCTCCCAGACATGCACAAGCGCTGGGCCCTCGTGT < 41bp 0.810788558177958 0.503390103288526 NA NA prediction 0.614796909778863 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9974298 chr3:9974296 nonsynonymous SNV 0.995 0 19 hm6Am_associated_SNPs_511 0 0 1 0 2 IL17RC chr3:9974292 3'AG 9974292 Downstream 5bp
225 chr3 9974296 9974296 1 + C G BLCA 9974298 + 9974278 9974318 41 TCTGGGTCTCCCAGACATCCACAAGCGCTGGGCCCTCGTGT TCTGGGTCTCCCAGACATGCACAAGCGCTGGGCCCTCGTGT < 41bp 0.810788558177958 0.503390103288526 NA NA prediction 0.614796909778863 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9974298 chr3:9974296 nonsynonymous SNV 0.995 0 19 hm6Am_associated_SNPs_511 0 0 1 0 2 IL17RC chr3:9974387 5'GT 9974387 Upstream 92bp
226 chr11 44995887 44995887 1 + C G rs562543571 44995889 + 44995869 44995909 41 CACAGGGCACCATTGAGACCACAGGAAGTGGCTTCCTGCCT CACAGGGCACCATTGAGAGCACAGGAAGTGGCTTCCTGCCT < 41bp 0.82191707414091 0.515062499991949 NA NA prediction 0.613709148297922 Functional Loss - LOC221122 ENSG00000254654 ncRNA_exonic Human lincRNA chr11:44995889 chr11:44995887 . . 0 19 hm6Am_associated_SNPs_515 0 0 0 0 1 LOC221122 chr11:44995958 5'GT 44995958 Upstream 72bp
227 chr17 4436298 4436298 1 + C G rs202128566 4436300 + 4436280 4436320 41 ACGTCTTCTCCTCCCTGGCCACGTCGGCTGTCTCCTTCGCC ACGTCTTCTCCTCCCTGGGCACGTCGGCTGTCTCCTTCGCC < 41bp 0.806730744003359 0.477240386117242 NA NA prediction 0.613461488006717 Functional Loss - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4436300 chr17:4436298 nonsynonymous SNV 0.999 1 19 hm6Am_associated_SNPs_516 0 0 0 0 1 SPNS2 chr17:4436272 3'AG 4436272 Downstream 27bp
228 chr11 12265624 12265624 1 + C G LUAD 12265626 + 12265606 12265646 41 CCAGCTGCTTCTTCCTCTCCATCAACTGTTGACTCTGCTTC CCAGCTGCTTCTTCCTCTGCATCAACTGTTGACTCTGCTTC < 41bp 0.834002789501943 0.527452953554868 NA NA prediction 0.613099671894149 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12265626 chr11:12265624 nonsynonymous SNV 0.020 0 19 hm6Am_associated_SNPs_517 0 0 0 3 2 MICAL2 chr11:12265534 3'AG 12265534 Downstream 91bp
229 chr11 12265624 12265624 1 + C G LUAD 12265626 + 12265606 12265646 41 CCAGCTGCTTCTTCCTCTCCATCAACTGTTGACTCTGCTTC CCAGCTGCTTCTTCCTCTGCATCAACTGTTGACTCTGCTTC < 41bp 0.834002789501943 0.527452953554868 NA NA prediction 0.613099671894149 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12265626 chr11:12265624 nonsynonymous SNV 0.020 0 19 hm6Am_associated_SNPs_517 0 0 0 3 2 MICAL2 chr11:12265659 5'GT 12265659 Upstream 36bp
230 chr17 1943099 1943099 1 + C G rs80150196 1943101 + 1943081 1943121 41 CTGTCATGATTGCCAACCCCAATGTCCCCGCTTACCGGTAT CTGTCATGATTGCCAACCGCAATGTCCCCGCTTACCGGTAT < 41bp 0.843643471502133 0.537169151586949 NA NA prediction 0.612948639830367 Functional Loss - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1943101 chr17:1943099 nonsynonymous SNV 0.834 4 19 hm6Am_associated_SNPs_518 0 0 1 0 2 DPH1 chr17:1943049 3'AG 1943049 Downstream 51bp
231 chr17 1943099 1943099 1 + C G rs80150196 1943101 + 1943081 1943121 41 CTGTCATGATTGCCAACCCCAATGTCCCCGCTTACCGGTAT CTGTCATGATTGCCAACCGCAATGTCCCCGCTTACCGGTAT < 41bp 0.843643471502133 0.537169151586949 NA NA prediction 0.612948639830367 Functional Loss - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1943101 chr17:1943099 nonsynonymous SNV 0.834 4 19 hm6Am_associated_SNPs_518 0 0 1 0 2 DPH1 chr17:1943117 5'GT 1943117 Upstream 19bp
232 chr12 70352271 70352271 1 + T G UCEC 70352273 + 70352253 70352293 41 ATTTTGCTGGGATATTCTTCACCGATTACTTCTTTTACTTC ATTTTGCTGGGATATTCTGCACCGATTACTTCTTTTACTTC < 41bp 0.805466028492196 0.420659634466616 NA NA prediction 0.610932056984392 Functional Loss - MYRFL ENSG00000166268 CDS Human protein_coding chr12:70352273 chr12:70352271 nonsynonymous SNV 0.995 4 19 hm6Am_associated_SNPs_523 0 0 0 0 1 MYRFL chr12:70352225 3'AG 70352225 Downstream 47bp
233 chr1 11907662 11907662 1 - G C GBM 11907660 - 11907640 11907680 41 GTCAGACCAGAGCTAATCCCATGTACAATGCCGTGTCCAAC GTCAGACCAGAGCTAATCGCATGTACAATGCCGTGTCCAAC < 41bp 0.805024617524779 0.472183879106515 NA NA prediction 0.610049235049557 Functional Loss - NPPA ENSG00000175206 CDS Human protein_coding chr1:11907660 chr1:11907662 nonsynonymous SNV 0.004 4 19 hm6Am_associated_SNPs_527 0 0 0 0 1 NPPA chr1:11907619 5'GT 11907619 Upstream 44bp
234 chr17 71193158 71193158 1 + T G SKCM 71193160 + 71193140 71193180 41 GTTCTCCTCGCCAAGCCCTCACAGACTTCCTGCTGGCCAGA GTTCTCCTCGCCAAGCCCGCACAGACTTCCTGCTGGCCAGA < 41bp 0.80490426263913 0.405250752783878 NA NA prediction 0.609808525278261 Functional Loss - COG1 ENSG00000166685 CDS Human protein_coding chr17:71193160 chr17:71193158 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_528 0 0 1 0 1 COG1 chr17:71193220 5'GT 71193220 Upstream 63bp
235 chr5 131994030 131994030 1 + T G OV 131994032 + 131994012 131994052 41 AGCTCATTGAGGAGCTGGTCAACATCACCCAGAACCAGAAG AGCTCATTGAGGAGCTGGGCAACATCACCCAGAACCAGAAG < 41bp 0.804526416829239 0.411951785654433 NA NA prediction 0.609052833658477 Functional Loss - IL13 ENSG00000169194 CDS Human protein_coding chr5:131994032 chr5:131994030 nonsynonymous SNV 0.938 1 19 hm6Am_associated_SNPs_532 0 0 0 0 1 IL13 chr5:131994052 5'GT 131994052 Upstream 23bp
236 chr4 8609103 8609103 1 + C G CESC 8609105 + 8609085 8609125 41 CCTACCCCTTCGACTTCTCCAAGCACCCCCAGGAGGAGAAG CCTACCCCTTCGACTTCTGCAAGCACCCCCAGGAGGAGAAG < 41bp 0.80266000816688 0.46761807324425 NA NA prediction 0.605320016333759 Functional Loss - CPZ ENSG00000109625 CDS Human protein_coding chr4:8609105 chr4:8609103 nonsynonymous SNV 0.999 3 19 hm6Am_associated_SNPs_540 0 0 0 0 1 CPZ chr4:8609152 5'GT 8609152 Upstream 50bp
237 chr3 35835244 35835244 1 + C G SKCM 35835246 + 35835226 35835266 41 CAGCAGTCATACCAACAGCCAATCATGCTACCTAACCAGGC CAGCAGTCATACCAACAGGCAATCATGCTACCTAACCAGGC < 41bp 0.822453643063512 0.519985667181888 NA NA prediction 0.604935951763246 Functional Loss - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35835246 chr3:35835244 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_541 0 0 0 0 1 ARPP21 chr3:35835193 3'AG 35835193 Downstream 52bp
238 chr6 33080360 33080360 1 + T G rs9348906 33080362 + 33080342 33080382 41 CATTACTGATGGTGCTGCTCATATCTGTGGTCCAGAGCAGG CATTACTGATGGTGCTGCGCATATCTGTGGTCCAGAGCAGG < 41bp 0.850452380824554 0.547988942962542 NA NA prediction 0.604926875724025 Functional Loss - HLA-DPB2 ENSG00000224557 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:33080362 chr6:33080360 . . 0 19 hm6Am_associated_SNPs_542 0 0 0 6 1 HLA-DPB2 chr6:33080392 5'GT 33080392 Upstream 33bp
239 chr1 233802348 233802348 1 + C G DLBC 233802350 + 233802330 233802370 41 TCTCCTTGCAGGTTATGGCCACACCGTGCCCTTGTCAGATG TCTCCTTGCAGGTTATGGGCACACCGTGCCCTTGTCAGATG < 41bp 0.834640620689306 0.532418023137299 NA NA prediction 0.604445195104015 Functional Loss - KCNK1 ENSG00000135750 CDS Human protein_coding chr1:233802350 chr1:233802348 synonymous SNV . 0 19 hm6Am_associated_SNPs_543 0 0 1 0 1 KCNK1 chr1:233802341 3'AG 233802341 Downstream 8bp
240 chr11 93517903 93517903 1 + C G rs184914659 93517905 + 93517885 93517925 41 AGTGGCCGGGCGCCGGGTCCAGCGCAGACCAGGACGACGAG AGTGGCCGGGCGCCGGGTGCAGCGCAGACCAGGACGACGAG < 41bp 0.801355719278275 0.463612861627851 NA NA prediction 0.60271143855655 Functional Loss - MED17 ENSG00000042429 CDS Human protein_coding chr11:93517905 chr11:93517903 nonsynonymous SNV 0.035 0 19 hm6Am_associated_SNPs_547 0 0 1 0 1 MED17 chr11:93517929 5'GT 93517929 Upstream 27bp
241 chr19 15739650 15739650 1 + C G KIRP 15739652 + 15739632 15739672 41 TTCCTTTCTCGGCGGGGCCCAGGTGAGGCCAGGGGGTGTCT TTCCTTTCTCGGCGGGGCGCAGGTGAGGCCAGGGGGTGTCT < 41bp 0.829655361016822 0.528388355749344 NA NA prediction 0.602534010534955 Functional Loss - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15739652 chr19:15739650 . 0.686 2 19 hm6Am_associated_SNPs_551 0 0 0 0 2 CYP4F8 chr19:15739571 3'AG 15739571 Downstream 80bp
242 chr19 15739650 15739650 1 + C G KIRP 15739652 + 15739632 15739672 41 TTCCTTTCTCGGCGGGGCCCAGGTGAGGCCAGGGGGTGTCT TTCCTTTCTCGGCGGGGCGCAGGTGAGGCCAGGGGGTGTCT < 41bp 0.829655361016822 0.528388355749344 NA NA prediction 0.602534010534955 Functional Loss - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15739652 chr19:15739650 . 0.686 2 19 hm6Am_associated_SNPs_551 0 0 0 0 2 CYP4F8 chr19:15739653 5'GT 15739653 Upstream 4bp
243 chr19 10218236 10218236 1 + T G LUAD 10218238 + 10218218 10218258 41 TGGCTGGGCCCCTCGGGGTCACACACTTTCTGATCCTGAGC TGGCTGGGCCCCTCGGGGGCACACACTTTCTGATCCTGAGC < 41bp 0.800421138020389 0.451082522666244 NA NA prediction 0.600842276040779 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10218238 chr19:10218236 nonsynonymous SNV 0.976 3 19 hm6Am_associated_SNPs_556 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10218181 3'AG 10218181 Downstream 56bp
244 chr19 10218236 10218236 1 + T G LUAD 10218238 + 10218218 10218258 41 TGGCTGGGCCCCTCGGGGTCACACACTTTCTGATCCTGAGC TGGCTGGGCCCCTCGGGGGCACACACTTTCTGATCCTGAGC < 41bp 0.800421138020389 0.451082522666244 NA NA prediction 0.600842276040779 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10218238 chr19:10218236 nonsynonymous SNV 0.976 3 19 hm6Am_associated_SNPs_556 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10218282 5'GT 10218282 Upstream 47bp
245 chr17 7750185 7750185 1 + C G OV 7750187 + 7750167 7750207 41 CCACCACCATTACCACCACCACCACCACCACCACCACCACC CCACCACCATTACCACCAGCACCACCACCACCACCACCACC < 41bp 0.799685898776048 0.460635971635485 NA NA prediction 0.599371797552095 Functional Loss - KDM6B ENSG00000132510 CDS Human protein_coding chr17:7750187 chr17:7750185 nonsynonymous SNV 0.856 1 19 hm6Am_associated_SNPs_558 0 0 0 0 1 KDM6B chr17:7750137 3'AG 7750137 Downstream 49bp
246 chr3 33406169 33406169 1 + T G BRCA 33406171 + 33406151 33406191 41 GTGGATTCCTGAGGAAGCTCAGCTTGCGAGGCTGCATTGGT GTGGATTCCTGAGGAAGCGCAGCTTGCGAGGCTGCATTGGT < 41bp 0.804214298533093 0.505388251385178 NA NA prediction 0.59765209429583 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33406171 chr3:33406169 nonsynonymous SNV 0.999 4 19 hm6Am_associated_SNPs_564 0 0 1 0 1 FBXL2 chr3:33406211 5'GT 33406211 Upstream 43bp
247 chr2 233388488 233388488 1 + C G rs540536012 233388490 + 233388470 233388510 41 CGCCCGCAGCAGCCTCCTCCAGCCGCGAGCCCAGCTGCAGG CGCCCGCAGCAGCCTCCTGCAGCCGCGAGCCCAGCTGCAGG < 41bp 0.798603043549286 0.487991675639469 NA NA prediction 0.597206087098572 Functional Loss - PRSS56 ENSG00000237412 CDS Human protein_coding chr2:233388490 chr2:233388488 nonsynonymous SNV 0.817 0 19 hm6Am_associated_SNPs_565 0 0 0 0 1 PRSS56 chr2:233388482 3'AG 233388482 Downstream 7bp
248 chr6 168842113 168842113 1 + T G rs73270928 168842115 + 168842095 168842135 41 GCTCCCGCCGGTGCCCGCTCAGAAGTTCTCGGCGCTCACGG GCTCCCGCCGGTGCCCGCGCAGAAGTTCTCGGCGCTCACGG < 41bp 0.903060192354262 0.605563160273238 NA NA prediction 0.594994064162048 Functional Loss - SMOC2 ENSG00000112562 CDS Human protein_coding chr6:168842115 chr6:168842113 synonymous SNV . 0 19 hm6Am_associated_SNPs_574 0 0 0 0 1 SMOC2 chr6:168842134 5'GT 168842134 Upstream 22bp
249 chr18 77137328 77137328 1 + T G BRCA 77137330 + 77137310 77137350 41 GCCTCCCGCTGTATGTCCTCAAGTACCTGAGGCGCAAGCTC GCCTCCCGCTGTATGTCCGCAAGTACCTGAGGCGCAAGCTC < 41bp 0.891218593528414 0.594004766031916 NA NA prediction 0.594427654992995 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77137330 chr18:77137328 nonsynonymous SNV 0.340 3 19 hm6Am_associated_SNPs_578 0 0 1 0 1 ATP9B chr18:77137247 3'AG 77137247 Downstream 82bp
250 chr12 98987856 98987856 1 + C G LUSC 98987858 + 98987838 98987878 41 GACCTCCGCAGCAGCTCCCCAGGGCCCACGGGCCAGCCCCG GACCTCCGCAGCAGCTCCGCAGGGCCCACGGGCCAGCCCCG < 41bp 0.845293183859098 0.548586782478777 NA NA prediction 0.593412802760642 Functional Loss - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98987858 chr12:98987856 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_579 0 0 1 0 2 SLC25A3 chr12:98987757 3'AG 98987757 Downstream 100bp
251 chr12 98987856 98987856 1 + C G LUSC 98987858 + 98987838 98987878 41 GACCTCCGCAGCAGCTCCCCAGGGCCCACGGGCCAGCCCCG GACCTCCGCAGCAGCTCCGCAGGGCCCACGGGCCAGCCCCG < 41bp 0.845293183859098 0.548586782478777 NA NA prediction 0.593412802760642 Functional Loss - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98987858 chr12:98987856 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_579 0 0 1 0 2 SLC25A3 chr12:98987913 5'GT 98987913 Upstream 58bp
252 chr20 43559364 43559364 1 + C G LGG 43559366 + 43559346 43559386 41 CTTCCTGCCTGCCATGCCCCAGGTGACGGCCTGCCCGCAAC CTTCCTGCCTGCCATGCCGCAGGTGACGGCCTGCCCGCAAC < 41bp 0.796689426683122 0.461785194167272 NA NA prediction 0.593378853366245 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43559366 chr20:43559364 synonymous SNV . 0 19 hm6Am_associated_SNPs_580 0 0 1 0 1 PABPC1L chr20:43559367 5'GT 43559367 Upstream 4bp
253 chr16 23847649 23847649 1 + C G HNSC 23847651 + 23847631 23847671 41 GCAGCCCACCTTCTGCAGCCACTGCACCGACTTCATCTGGT GCAGCCCACCTTCTGCAGGCACTGCACCGACTTCATCTGGT < 41bp 0.833355516561806 0.537061380500959 NA NA prediction 0.592588272121694 Functional Loss - PRKCB ENSG00000166501 CDS Human protein_coding chr16:23847651 chr16:23847649 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_583 0 0 1 0 1 PRKCB chr16:23847669 5'GT 23847669 Upstream 21bp
254 chr4 4864494 4864494 1 + T G OV 4864496 + 4864476 4864516 41 GTAAGCCGCGGACGCCCTTCACCACCGCGCAGCTGCTGGCG GTAAGCCGCGGACGCCCTGCACCACCGCGCAGCTGCTGGCG < 41bp 0.795882300206412 0.395793184117285 NA NA prediction 0.591764600412825 Functional Loss - MSX1 ENSG00000163132 CDS Human protein_coding chr4:4864496 chr4:4864494 nonsynonymous SNV 0.918 5 19 hm6Am_associated_SNPs_585 0 0 0 0 1 MSX1 chr4:4864428 3'AG 4864428 Downstream 67bp
255 chr19 50093224 50093224 1 + C G OV 50093226 + 50093206 50093246 41 ACGCCCCTGCCTCCACCCCCACCCCCACCCCCAGGCCTCCC ACGCCCCTGCCTCCACCCGCACCCCCACCCCCAGGCCTCCC < 41bp 0.795453987503643 0.453440796635516 NA NA prediction 0.590907975007286 Functional Loss - PRRG2 ENSG00000126460 CDS Human protein_coding chr19:50093226 chr19:50093224 nonsynonymous SNV 0.233 1 19 hm6Am_associated_SNPs_590 0 0 0 0 2 PRRG2 chr19:50093157 3'AG 50093157 Downstream 68bp
256 chr19 50093224 50093224 1 + C G OV 50093226 + 50093206 50093246 41 ACGCCCCTGCCTCCACCCCCACCCCCACCCCCAGGCCTCCC ACGCCCCTGCCTCCACCCGCACCCCCACCCCCAGGCCTCCC < 41bp 0.795453987503643 0.453440796635516 NA NA prediction 0.590907975007286 Functional Loss - PRRG2 ENSG00000126460 CDS Human protein_coding chr19:50093226 chr19:50093224 nonsynonymous SNV 0.233 1 19 hm6Am_associated_SNPs_590 0 0 0 0 2 PRRG2 chr19:50093309 5'GT 50093309 Upstream 86bp
257 chr2 27852730 27852730 1 + T G UCEC 27852732 + 27852712 27852752 41 CCATATCTCTGCAGAGGCTCACAGGACACCTGCATGCCCAA CCATATCTCTGCAGAGGCGCACAGGACACCTGCATGCCCAA < 41bp 0.795414448145884 0.390496506287133 NA NA prediction 0.590828896291769 Functional Loss - GPN1 ENSG00000198522;ENSG00000243943 CDS Human other chr2:27852732 chr2:27852730 nonsynonymous SNV 0.984 4 19 hm6Am_associated_SNPs_591 0 0 1 0 2 GPN1 chr2:27852726 3'AG 27852726 Downstream 5bp
258 chr2 27852730 27852730 1 + T G UCEC 27852732 + 27852712 27852752 41 CCATATCTCTGCAGAGGCTCACAGGACACCTGCATGCCCAA CCATATCTCTGCAGAGGCGCACAGGACACCTGCATGCCCAA < 41bp 0.795414448145884 0.390496506287133 NA NA prediction 0.590828896291769 Functional Loss - GPN1 ENSG00000198522;ENSG00000243943 CDS Human protein_coding chr2:27852732 chr2:27852730 nonsynonymous SNV 0.984 4 19 hm6Am_associated_SNPs_591 0 0 1 0 2 GPN1 chr2:27852819 5'GT 27852819 Upstream 90bp
259 chr20 5988051 5988051 1 + C G rs533359179 5988053 + 5988033 5988073 41 AGTAGTTGGTCGAGTATGCCACAGGTTATCTGGTTGAGTAA AGTAGTTGGTCGAGTATGGCACAGGTTATCTGGTTGAGTAA < 41bp 0.846504259965084 0.551220860360047 NA NA prediction 0.590566799210074 Functional Loss - CRLS1 ENSG00000088766 CDS Human protein_coding chr20:5988053 chr20:5988051 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_593 0 0 0 0 1 CRLS1 chr20:5988056 5'GT 5988056 Upstream 6bp
260 chr16 2661005 2661005 1 + C G rs190311378 2661007 + 2660987 2661027 41 CTGGCCACCTCTCCTCACCCATCTTAGAGGCATGGCCGGGC CTGGCCACCTCTCCTCACGCATCTTAGAGGCATGGCCGGGC < 41bp 0.8391143435245 0.544529143526833 NA NA prediction 0.589170399995334 Functional Loss - LOC652276 ENSG00000215154 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:2661007 chr16:2661005 . . 0 19 hm6Am_associated_SNPs_596 0 0 1 0 1 LOC652276 chr16:2661053 5'GT 2661053 Upstream 49bp
261 chr7 12610592 12610592 1 + C G UCEC 12610594 + 12610574 12610614 41 GAGCCGAGGCTTCACCTACCACCTGCACTTCTGGCTCGGTA GAGCCGAGGCTTCACCTAGCACCTGCACTTCTGGCTCGGTA < 41bp 0.857073390911 0.562534438151704 NA NA prediction 0.589077905518592 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12610594 chr7:12610592 stopgain 0.892 1 19 hm6Am_associated_SNPs_599 0 0 0 1 1 SCIN chr7:12610611 5'GT 12610611 Upstream 20bp
262 chr5 79950736 79950736 1 + C G TGCT 79950738 + 79950718 79950758 41 GCAGCGGCCGCAGCGCCCCCAGCGCCCCCAGCTCCCGCCTT GCAGCGGCCGCAGCGCCCGCAGCGCCCCCAGCTCCCGCCTT < 41bp 0.847770540834542 0.55463126640357 NA NA prediction 0.586278548861944 Functional Loss - MSH3 ENSG00000113318 CDS Human protein_coding chr5:79950738 chr5:79950736 nonsynonymous SNV 0.274 1 19 hm6Am_associated_SNPs_605 0 0 0 0 1 MSH3 chr5:79950783 5'GT 79950783 Upstream 48bp
263 chr20 43108685 43108685 1 + T G LIHC 43108687 + 43108667 43108707 41 ACCAGCCCTTCTGTGGCCTCACTCTCTGAAAATGAGCTGCC ACCAGCCCTTCTGTGGCCGCACTCTCTGAAAATGAGCTGCC < 41bp 0.792140389337567 0.388091756327604 NA NA prediction 0.584280778675133 Functional Loss - TTPAL ENSG00000124120 CDS Human protein_coding chr20:43108687 chr20:43108685 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_611 0 0 1 0 1 TTPAL chr20:43108625 3'AG 43108625 Downstream 61bp
264 chr6 43968369 43968369 1 - G C DLBC 43968367 - 43968347 43968387 41 CCAGGGCGCCTGCTTCTGCCAGTGGCATCATCACCCCACTC CCAGGGCGCCTGCTTCTGGCAGTGGCATCATCACCCCACTC < 41bp 0.792036594727897 0.455638336285539 NA NA prediction 0.584073189455794 Functional Loss - C6orf223 ENSG00000181577 CDS Human antisense chr6:43968367 chr6:43968369 nonsynonymous SNV 0.905 2 19 hm6Am_associated_SNPs_612 0 0 0 0 2 LOC101929705 chr6:43968328 5'GT 43968328 Upstream 42bp
265 chr6 43968369 43968369 1 - G C DLBC 43968367 - 43968347 43968387 41 CCAGGGCGCCTGCTTCTGCCAGTGGCATCATCACCCCACTC CCAGGGCGCCTGCTTCTGGCAGTGGCATCATCACCCCACTC < 41bp 0.792036594727897 0.455638336285539 NA NA prediction 0.584073189455794 Functional Loss - C6orf223 ENSG00000181577 CDS Human antisense chr6:43968367 chr6:43968369 nonsynonymous SNV 0.905 2 19 hm6Am_associated_SNPs_612 0 0 0 0 2 LOC101929705 chr6:43968452 3'AG 43968452 Downstream 84bp
266 chr19 36024471 36024471 1 + C G LUAD 36024473 + 36024453 36024493 41 CACCAATGTCACCGTTGTCCAGTTGCTGCGACAGCCGTGCC CACCAATGTCACCGTTGTGCAGTTGCTGCGACAGCCGTGCC < 41bp 0.856699293837328 0.565245574835592 NA NA prediction 0.582907438003473 Functional Loss - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36024473 chr19:36024471 synonymous SNV . 0 19 hm6Am_associated_SNPs_619 0 0 0 0 1 GAPDHS chr19:36024496 5'GT 36024496 Upstream 26bp
267 chr1 28843289 28843289 1 + T G rs6661763 28843291 + 28843271 28843311 41 CAGAGAGAGAGAGAGAGATCAGAGATCCCAGGGTTAAAAGT CAGAGAGAGAGAGAGAGAGCAGAGATCCCAGGGTTAAAAGT < 41bp 0.791007556449096 0.483033724619745 NA NA prediction 0.582015112898191 Functional Loss - RCC1 ENSG00000180198 UTR5 Human protein_coding chr1:28843291 chr1:28843289 . . 0 19 hm6Am_associated_SNPs_622 0 0 1 0 2 RCC1 chr1:28843237 3'AG 28843237 Downstream 53bp
268 chr1 28843289 28843289 1 + T G rs6661763 28843291 + 28843271 28843311 41 CAGAGAGAGAGAGAGAGATCAGAGATCCCAGGGTTAAAAGT CAGAGAGAGAGAGAGAGAGCAGAGATCCCAGGGTTAAAAGT < 41bp 0.791007556449096 0.483033724619745 NA NA prediction 0.582015112898191 Functional Loss - RCC1 ENSG00000180198 UTR5 Human protein_coding chr1:28843291 chr1:28843289 . . 0 19 hm6Am_associated_SNPs_622 0 0 1 0 2 RCC1 chr1:28843379 5'GT 28843379 Upstream 91bp
269 chr15 101390084 101390084 1 + C G rs75113941 101390086 + 101390066 101390106 41 ATGAGACTGCTGCGCTCCCCAGACGAGGAAACCTGGTCTCC ATGAGACTGCTGCGCTCCGCAGACGAGGAAACCTGGTCTCC < 41bp 0.843588591004375 0.552822984080027 NA NA prediction 0.581531213848697 Functional Loss - ASB7;ALDH1A3 ENSG00000232386;ENSG00000272808 ncRNA_exonic Human other chr15:101390086 chr15:101390084 . . 0 19 hm6Am_associated_SNPs_624 0 0 0 0 1 ASB7;ALDH1A3 chr15:101390115 5'GT 101390115 Upstream 32bp
270 chr1 213032441 213032441 1 + T G PRAD 213032443 + 213032423 213032463 41 GCTCGGTGGCCCAGGTGTTCATCCTGGGCTTGCCCTCCCGC GCTCGGTGGCCCAGGTGTGCATCCTGGGCTTGCCCTCCCGC < 41bp 0.907137489976428 0.617228239501037 NA NA prediction 0.579818500950782 Functional Loss - FLVCR1 ENSG00000162769 CDS Human protein_coding chr1:213032443 chr1:213032441 nonsynonymous SNV 0.989 2 19 hm6Am_associated_SNPs_627 0 0 1 0 1 FLVCR1 chr1:213032532 5'GT 213032532 Upstream 92bp
271 chr19 7599251 7599251 1 + C G rs187545890 7599253 + 7599233 7599273 41 CTGATGTTCCCATACCCCCCACGTCTCGGCAGGTGTTTCCA CTGATGTTCCCATACCCCGCACGTCTCGGCAGGTGTTTCCA < 41bp 0.855436101868216 0.566002079501828 NA NA prediction 0.578868044732777 Functional Loss - PNPLA6 ENSG00000032444 UTR5 Human other chr19:7599253 chr19:7599251 . . 0 19 hm6Am_associated_SNPs_629 0 0 0 0 1 PNPLA6 chr19:7599332 5'GT 7599332 Upstream 82bp
272 chrX 53456907 53456907 1 + C G SARC 53456909 + 53456889 53456929 41 TGTGTGCCATGGCCAACGCCAACAAAGCGCAGGTATGGCCT TGTGTGCCATGGCCAACGGCAACAAAGCGCAGGTATGGCCT < 41bp 0.788465188977397 0.440567616277973 NA NA prediction 0.576930377954794 Functional Loss - RIBC1 ENSG00000158423 CDS Human protein_coding chrX:53456909 chrX:53456907 nonsynonymous SNV 0.811 0 19 hm6Am_associated_SNPs_631 0 0 0 0 1 RIBC1 chrX:53456920 5'GT 53456920 Upstream 14bp
273 chr15 23811161 23811161 1 + T G COAD 23811163 + 23811143 23811183 41 CTGAGGCCTGCCCCAGCCTCAGGAGGAGGAGCCTGGCCCAG CTGAGGCCTGCCCCAGCCGCAGGAGGAGGAGCCTGGCCCAG < 41bp 0.788198521000866 0.381159853499024 NA NA prediction 0.576397042001731 Functional Loss - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811163 chr15:23811161 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_634 0 0 0 0 1 MKRN3 chr15:23811234 5'GT 23811234 Upstream 74bp
274 chr1 21889703 21889703 1 + C G rs184095519 21889705 + 21889685 21889725 41 CCGTGGGGGTAAGCGCAGCCACTGAGCGTTCCCGGTGCAAC CCGTGGGGGTAAGCGCAGGCACTGAGCGTTCCCGGTGCAAC < 41bp 0.859691293123632 0.57243718480532 NA NA prediction 0.574508216636625 Functional Loss - ALPL ENSG00000162551 CDS Human protein_coding chr1:21889705 chr1:21889703 nonsynonymous SNV 0.076 2 19 hm6Am_associated_SNPs_641 1 0 0 0 1 ALPL chr1:21889777 5'GT 21889777 Upstream 75bp
275 chr4 95496831 95496831 1 + C G rs116676966 95496833 + 95496813 95496853 41 CTGTGTCCAAAGTCACTTCCACAAACAACATGGCCTACAAT CTGTGTCCAAAGTCACTTGCACAAACAACATGGCCTACAAT < 41bp 0.82583892818287 0.539117731038817 NA NA prediction 0.573442394288107 Functional Loss - PDLIM5 ENSG00000163110 CDS Human protein_coding chr4:95496833 chr4:95496831 nonsynonymous SNV 0.998 1 19 hm6Am_associated_SNPs_642 0 0 1 0 1 PDLIM5 chr4:95496767 3'AG 95496767 Downstream 65bp
276 chr1 15802643 15802643 1 + C G LUSC 15802645 + 15802625 15802665 41 TTAGGACCCTGCTGCTGTCCACTTTGGTGGCTGGAGGTAAG TTAGGACCCTGCTGCTGTGCACTTTGGTGGCTGGAGGTAAG < 41bp 0.785968387198481 0.444490493092479 NA NA prediction 0.571936774396962 Functional Loss - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15802645 chr1:15802643 nonsynonymous SNV 0.001 1 19 hm6Am_associated_SNPs_645 0 0 0 0 1 CELA2B chr1:15802660 5'GT 15802660 Upstream 18bp
277 chr7 47801083 47801083 1 + C G rs34368666 47801085 + 47801065 47801105 41 GATGATCAGTGACGATGACCACCTTTTCATATGCCTGTTTG GATGATCAGTGACGATGAGCACCTTTTCATATGCCTGTTTG < 41bp 0.831047616694965 0.545734224370696 NA NA prediction 0.570626784648538 Functional Loss - LINC00525 ENSG00000146666 ncRNA_exonic Human antisense chr7:47801085 chr7:47801083 . . 0 19 hm6Am_associated_SNPs_648 0 0 0 2 1 LINC00525 chr7:47801111 5'GT 47801111 Upstream 29bp
278 chr2 220100212 220100212 1 + C G rs77280560 220100214 + 220100194 220100234 41 AGGGACTCTCGGGCCCGGCCACCTTATACTGTTGCGGCTGA AGGGACTCTCGGGCCCGGGCACCTTATACTGTTGCGGCTGA < 41bp 0.784405836584785 0.438488929296699 NA NA prediction 0.568811673169571 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220100214 chr2:220100212 nonsynonymous SNV 0.925 1 19 hm6Am_associated_SNPs_652 0 0 1 0 2 ANKZF1 chr2:220100196 3'AG 220100196 Downstream 17bp
279 chr2 220100212 220100212 1 + C G rs77280560 220100214 + 220100194 220100234 41 AGGGACTCTCGGGCCCGGCCACCTTATACTGTTGCGGCTGA AGGGACTCTCGGGCCCGGGCACCTTATACTGTTGCGGCTGA < 41bp 0.784405836584785 0.438488929296699 NA NA prediction 0.568811673169571 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220100214 chr2:220100212 nonsynonymous SNV 0.925 1 19 hm6Am_associated_SNPs_652 0 0 1 0 2 ANKZF1 chr2:220100307 5'GT 220100307 Upstream 96bp
280 chr19 30414572 30414572 1 + C G rs3745643 30414574 + 30414554 30414594 41 GGGTCTTCTCACTCTTTTCCAGGCTCCTTGGAGGTCACTGC GGGTCTTCTCACTCTTTTGCAGGCTCCTTGGAGGTCACTGC < 41bp 0.842395628255612 0.559202778067982 NA NA prediction 0.56638570037526 Functional Loss - URI1 ENSG00000105176 UTR5 Human protein_coding chr19:30414574 chr19:30414572 . . 0 19 hm6Am_associated_SNPs_655 0 0 0 0 1 URI1 chr19:30414661 5'GT 30414661 Upstream 90bp
281 chr3 49568286 49568286 1 + C G UCEC 49568288 + 49568268 49568308 41 GCACTGGGACTCACAGAGCCACACCCTGGAGGGCCTCCCCC GCACTGGGACTCACAGAGGCACACCCTGGAGGGCCTCCCCC < 41bp 0.834753627684174 0.552040275819833 NA NA prediction 0.565426703728682 Functional Loss - DAG1 ENSG00000173402 CDS Human protein_coding chr3:49568288 chr3:49568286 nonsynonymous SNV 0.109 4 19 hm6Am_associated_SNPs_658 0 0 1 0 1 DAG1 chr3:49568230 3'AG 49568230 Downstream 57bp
282 chr15 102516402 102516402 1 + C G CESC 102516404 + 102516384 102516424 41 TTGCCCGCGTGTCAGACTCCATCCCTCCTCTGCCGCCACCG TTGCCCGCGTGTCAGACTGCATCCCTCCTCTGCCGCCACCG < 41bp 0.782357601808873 0.467816254935642 NA NA prediction 0.564715203617747 Functional Loss - WASH3P ENSG00000185596 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102516404 chr15:102516402 . . 0 19 hm6Am_associated_SNPs_660 0 0 0 0 1 WASH3P chr15:102516336 3'AG 102516336 Downstream 67bp
283 chr19 41594486 41594486 1 + C G KIRC 41594488 + 41594468 41594508 41 GGAAGCTGCCTCCGGGACCCACCCCATTGCCCTTCATTGGA GGAAGCTGCCTCCGGGACGCACCCCATTGCCCTTCATTGGA < 41bp 0.780641435527578 0.432111587196843 NA NA prediction 0.561282871055157 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41594488 chr19:41594486 nonsynonymous SNV 0.150 3 19 hm6Am_associated_SNPs_668 0 0 0 0 1 CYP2A13 chr19:41594556 5'GT 41594556 Upstream 71bp
284 chr1 212209262 212209262 1 + C G PAAD 212209264 + 212209244 212209284 41 TTCGGTGCTCCGCCAGCCCCAGCTTGGCGTCCTGAGAAATG TTCGGTGCTCCGCCAGCCGCAGCTTGGCGTCCTGAGAAATG < 41bp 0.780612063897677 0.433092630124496 NA NA prediction 0.561224127795353 Functional Loss - DTL ENSG00000143476 CDS Human protein_coding chr1:212209264 chr1:212209262 synonymous SNV . 0 19 hm6Am_associated_SNPs_669 0 0 1 0 1 DTL chr1:212209284 5'GT 212209284 Upstream 23bp
285 chr6 3002323 3002323 1 + C G rs4149353 3002325 + 3002305 3002345 41 AAACTCACATGCCACCAGCCATATGATGTAAACATGTAAAC AAACTCACATGCCACCAGGCATATGATGTAAACATGTAAAC < 41bp 0.829279630290699 0.550226742316387 NA NA prediction 0.558105775948622 Functional Loss - NQO2 ENSG00000124588 UTR5 Human protein_coding chr6:3002325 chr6:3002323 . . 0 19 hm6Am_associated_SNPs_675 0 0 1 0 1 NQO2 chr6:3002284 3'AG 3002284 Downstream 40bp
286 chr1 55167829 55167829 1 + C G UCEC 55167831 + 55167811 55167851 41 GTCCAGAAGCTTCGGGCACCACGCACTCAGGCCATGGAGGA GTCCAGAAGCTTCGGGCAGCACGCACTCAGGCCATGGAGGA < 41bp 0.778835148391381 0.421386235550892 NA NA prediction 0.557670296782762 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55167831 chr1:55167829 nonsynonymous SNV 0.003 0 19 hm6Am_associated_SNPs_676 0 0 0 0 3 MROH7 chr1:55167763 3'AG 55167763 Downstream 67bp
287 chr1 55167829 55167829 1 + C G UCEC 55167831 + 55167811 55167851 41 GTCCAGAAGCTTCGGGCACCACGCACTCAGGCCATGGAGGA GTCCAGAAGCTTCGGGCAGCACGCACTCAGGCCATGGAGGA < 41bp 0.778835148391381 0.421386235550892 NA NA prediction 0.557670296782762 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55167831 chr1:55167829 nonsynonymous SNV 0.003 0 19 hm6Am_associated_SNPs_676 0 0 0 0 3 MROH7 chr1:55167909 5'GT 55167909 Upstream 81bp
288 chr1 55167829 55167829 1 + C G UCEC 55167831 + 55167811 55167851 41 GTCCAGAAGCTTCGGGCACCACGCACTCAGGCCATGGAGGA GTCCAGAAGCTTCGGGCAGCACGCACTCAGGCCATGGAGGA < 41bp 0.778835148391381 0.421386235550892 NA NA prediction 0.557670296782762 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55167831 chr1:55167829 nonsynonymous SNV 0.003 0 19 hm6Am_associated_SNPs_676 0 0 0 0 3 MROH7 chr1:55167918 5'GT 55167918 Upstream 90bp
289 chr12 53693683 53693683 1 + C G BLCA 53693685 + 53693665 53693705 41 GACGCACAATGGCACCTTCCACTGCGACGAGGCACTGGCAT GACGCACAATGGCACCTTGCACTGCGACGAGGCACTGGCAT < 41bp 0.876975960974784 0.599369240998099 NA NA prediction 0.55521343995337 Functional Loss - C12orf10 ENSG00000139637 CDS Human protein_coding chr12:53693685 chr12:53693683 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_682 0 0 1 0 1 C12orf10 chr12:53693737 5'GT 53693737 Upstream 55bp
290 chrX 72667526 72667526 1 + C G CESC 72667528 + 72667508 72667548 41 ACGCAGGCGCCGCCAAGGCCAGTTCCCCCAGCAGGAGCCGC ACGCAGGCGCCGCCAAGGGCAGTTCCCCCAGCAGGAGCCGC < 41bp 0.873408989877043 0.596620021186331 NA NA prediction 0.553577937381424 Functional Loss - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72667528 chrX:72667526 nonsynonymous SNV 0.461 0 19 hm6Am_associated_SNPs_688 0 0 0 0 1 CDX4 chrX:72667591 5'GT 72667591 Upstream 66bp
291 chr1 26752802 26752802 1 + C G BLCA 26752804 + 26752784 26752824 41 ACCCCAGCCCAAGAAGTGCCACTTCTGCCAGAGCATCAGCC ACCCCAGCCCAAGAAGTGGCACTTCTGCCAGAGCATCAGCC < 41bp 0.849419384605492 0.573153865775307 NA NA prediction 0.55253103766037 Functional Loss - LIN28A ENSG00000131914 CDS Human protein_coding chr1:26752804 chr1:26752802 nonsynonymous SNV 0.999 4 19 hm6Am_associated_SNPs_690 0 0 1 0 1 LIN28A chr1:26752733 3'AG 26752733 Downstream 70bp
292 chr20 61467564 61467564 1 + C G rs142066316 61467566 + 61467546 61467586 41 GTCGAGGGGAGCTGGGCCCCAAAGGCACCCAGGGTCCCAAC GTCGAGGGGAGCTGGGCCGCAAAGGCACCCAGGGTCCCAAC < 41bp 0.776049772902213 0.440138836747357 NA NA prediction 0.552099545804426 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61467566 chr20:61467564 nonsynonymous SNV 0.999 5 19 hm6Am_associated_SNPs_691 2 0 1 0 1 COL9A3 chr20:61467539 3'AG 61467539 Downstream 26bp
293 chr17 37034359 37034359 1 + C G CESC 37034361 + 37034341 37034381 41 CTGGCATAAAGCATGCTTCCATTGCGAGACCTGCAAGATGA CTGGCATAAAGCATGCTTGCATTGCGAGACCTGCAAGATGA < 41bp 0.775892546843857 0.47041336375097 NA NA prediction 0.551785093687714 Functional Loss - LASP1 ENSG00000002834 CDS Human protein_coding chr17:37034361 chr17:37034359 nonsynonymous SNV 0.998 3 19 hm6Am_associated_SNPs_693 0 0 1 0 2 LASP1 chr17:37034339 3'AG 37034339 Downstream 21bp
294 chr17 37034359 37034359 1 + C G CESC 37034361 + 37034341 37034381 41 CTGGCATAAAGCATGCTTCCATTGCGAGACCTGCAAGATGA CTGGCATAAAGCATGCTTGCATTGCGAGACCTGCAAGATGA < 41bp 0.775892546843857 0.47041336375097 NA NA prediction 0.551785093687714 Functional Loss - LASP1 ENSG00000002834 CDS Human protein_coding chr17:37034361 chr17:37034359 nonsynonymous SNV 0.998 3 19 hm6Am_associated_SNPs_693 0 0 1 0 2 LASP1 chr17:37034433 5'GT 37034433 Upstream 75bp
295 chr15 100340140 100340140 1 - G C PAAD 100340138 - 100340118 100340158 41 GTCGGCAGAGCAGGCAGACCAAGGAGTTCATCTTCTCGGAG GTCGGCAGAGCAGGCAGAGCAAGGAGTTCATCTTCTCGGAG < 41bp 0.862940013083547 0.587663908239583 NA NA prediction 0.550552209687929 Functional Loss - DNM1P46 ENSG00000182397 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:100340138 chr15:100340140 . . 0 19 hm6Am_associated_SNPs_700 0 0 0 0 1 DNM1P46 chr15:100340145 3'AG 100340145 Downstream 6bp
296 chr9 116267723 116267723 1 + T G UCEC 116267725 + 116267705 116267745 41 GCAGGGCTGTGTCCTAGATCACCATCCCGAGGGGAAAGGAC GCAGGGCTGTGTCCTAGAGCACCATCCCGAGGGGAAAGGAC < 41bp 0.775119607317663 0.38754418572642 NA NA prediction 0.550239214635326 Functional Loss - RGS3 ENSG00000138835 CDS Human protein_coding chr9:116267725 chr9:116267723 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_701 0 0 1 0 2 RGS3 chr9:116267722 3'AG 116267722 Downstream 2bp
297 chr9 116267723 116267723 1 + T G UCEC 116267725 + 116267705 116267745 41 GCAGGGCTGTGTCCTAGATCACCATCCCGAGGGGAAAGGAC GCAGGGCTGTGTCCTAGAGCACCATCCCGAGGGGAAAGGAC < 41bp 0.775119607317663 0.38754418572642 NA NA prediction 0.550239214635326 Functional Loss - RGS3 ENSG00000138835 CDS Human protein_coding chr9:116267725 chr9:116267723 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_701 0 0 1 0 2 RGS3 chr9:116267803 5'GT 116267803 Upstream 81bp
298 chr16 2511156 2511156 1 + T G UCS 2511158 + 2511138 2511178 41 CCAGGCCTGGGGCGGGCCTCAGGGACCAGCAAATGGCCCCA CCAGGCCTGGGGCGGGCCGCAGGGACCAGCAAATGGCCCCA < 41bp 0.915213126995327 0.641610231632954 NA NA prediction 0.547205790724747 Functional Loss - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2511158 chr16:2511156 nonsynonymous SNV 0.352 1 19 hm6Am_associated_SNPs_705 0 0 1 0 1 C16orf59 chr16:2511225 5'GT 2511225 Upstream 70bp
299 chr5 79950745 79950745 1 + C G rs557874766 79950747 + 79950727 79950767 41 GCAGCGCCCCCAGCGCCCCCAGCTCCCGCCTTCCCGCCCCA GCAGCGCCCCCAGCGCCCGCAGCTCCCGCCTTCCCGCCCCA < 41bp 0.871327075313097 0.597958715526817 NA NA prediction 0.54673671957256 Functional Loss - MSH3 ENSG00000113318 CDS Human protein_coding chr5:79950747 chr5:79950745 nonsynonymous SNV 0.183 1 19 hm6Am_associated_SNPs_706 0 0 0 0 1 MSH3 chr5:79950783 5'GT 79950783 Upstream 39bp
300 chr11 64335224 64335224 1 + C G BLCA 64335226 + 64335206 64335246 41 CCTTGGCCGCCGCACCATCCAGGCGGGTTCCCAGGCCATGG CCTTGGCCGCCGCACCATGCAGGCGGGTTCCCAGGCCATGG < 41bp 0.773291269315613 0.420744557725691 NA NA prediction 0.546582538631226 Functional Loss - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64335226 chr11:64335224 nonsynonymous SNV 0.001 1 19 hm6Am_associated_SNPs_707 0 0 0 0 1 SLC22A11 chr11:64335285 5'GT 64335285 Upstream 62bp
301 chr20 43353446 43353446 1 + C G rs148068865 43353448 + 43353428 43353468 41 AGGGGAGACCTTCCAGCCCCACTGCAGCATCCGCTGCCGCT AGGGGAGACCTTCCAGCCGCACTGCAGCATCCGCTGCCGCT < 41bp 0.772998848452958 0.424769433979425 NA NA prediction 0.545997696905917 Functional Loss - WISP2 ENSG00000064205 CDS Human protein_coding chr20:43353448 chr20:43353446 synonymous SNV . 0 19 hm6Am_associated_SNPs_709 0 0 0 0 1 WISP2 chr20:43353379 3'AG 43353379 Downstream 68bp
302 chr8 43147834 43147834 1 + C G PRAD 43147836 + 43147816 43147856 41 AGAAGATCTGGGCAAGCTCCACAGAGCTGCCTGGTGGGGTG AGAAGATCTGGGCAAGCTGCACAGAGCTGCCTGGTGGGGTG < 41bp 0.866046167160048 0.593711705408028 NA NA prediction 0.54466892350404 Functional Loss - POTEA ENSG00000188877 ncRNA_exonic Human polymorphic_pseudogene chr8:43147836 chr8:43147834 . . 0 19 hm6Am_associated_SNPs_716 0 0 0 0 1 POTEA chr8:43147926 5'GT 43147926 Upstream 93bp
303 chrX 47426121 47426121 1 + C G LUAD 47426123 + 47426103 47426143 41 AGCGCATCCGCTCCACGTCCACTCCCAACGTCCATATGGTC AGCGCATCCGCTCCACGTGCACTCCCAACGTCCATATGGTC < 41bp 0.771764261386012 0.417736529635525 NA NA prediction 0.543528522772025 Functional Loss - ARAF ENSG00000078061 CDS Human protein_coding chrX:47426123 chrX:47426121 nonsynonymous SNV 0.994 4 19 hm6Am_associated_SNPs_720 4 0 1 0 1 ARAF chrX:47426038 3'AG 47426038 Downstream 84bp
304 chr7 128312551 128312551 1 + C G UCEC 128312553 + 128312533 128312573 41 TGTCAACTGATTCATTCTCCAGAATTCAATTTGTTCTCCAA TGTCAACTGATTCATTCTGCAGAATTCAATTTGTTCTCCAA < 41bp 0.867078564354099 0.595849234259152 NA NA prediction 0.542458660189894 Functional Loss - FAM71F2 ENSG00000205085 CDS Human protein_coding chr7:128312553 chr7:128312551 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_723 0 0 1 0 1 FAM71F2 chr7:128312604 5'GT 128312604 Upstream 54bp
305 chr15 44069053 44069053 1 - A C COAD 44069051 - 44069031 44069071 41 GACAGCTCCGGCTCTGCTTCACGCAAGCTGCCCGGACTAGC GACAGCTCCGGCTCTGCTGCACGCAAGCTGCCCGGACTAGC < 41bp 0.922003630482189 0.650779471699928 NA NA prediction 0.542448317564522 Functional Loss - ELL3 ENSG00000128886 CDS Human protein_coding chr15:44069051 chr15:44069053 nonsynonymous SNV 0.024 2 19 hm6Am_associated_SNPs_724 0 0 0 0 1 ELL3 chr15:44068968 5'GT 44068968 Upstream 86bp
306 chr17 7750173 7750173 1 + C G LGG 7750175 + 7750155 7750195 41 CTGCCACTGCCTCCACCACCATTACCACCACCACCACCACC CTGCCACTGCCTCCACCAGCATTACCACCACCACCACCACC < 41bp 0.769904404088379 0.417255246495496 NA NA prediction 0.539808808176758 Functional Loss - KDM6B ENSG00000132510 CDS Human protein_coding chr17:7750175 chr17:7750173 nonsynonymous SNV 0.969 1 19 hm6Am_associated_SNPs_735 0 0 0 0 1 KDM6B chr17:7750137 3'AG 7750137 Downstream 37bp
307 chr6 36262034 36262034 1 + C G BLCA 36262036 + 36262016 36262056 41 CCGACGCCATCACCATCTCCACCTTCAGTGGGCAGCAGGAC CCGACGCCATCACCATCTGCACCTTCAGTGGGCAGCAGGAC < 41bp 0.769877683933657 0.412433315414676 NA NA prediction 0.539755367867314 Functional Loss - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36262036 chr6:36262034 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_736 0 0 0 0 2 PNPLA1 chr6:36261940 3'AG 36261940 Downstream 95bp
308 chr6 36262034 36262034 1 + C G BLCA 36262036 + 36262016 36262056 41 CCGACGCCATCACCATCTCCACCTTCAGTGGGCAGCAGGAC CCGACGCCATCACCATCTGCACCTTCAGTGGGCAGCAGGAC < 41bp 0.769877683933657 0.412433315414676 NA NA prediction 0.539755367867314 Functional Loss - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36262036 chr6:36262034 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_736 0 0 0 0 2 PNPLA1 chr6:36261967 3'AG 36261967 Downstream 68bp
309 chr5 43161823 43161823 1 + T G SKCM 43161825 + 43161805 43161845 41 TTTAAGGAGCACATGAAATCACACTCCACTGAGAGTTTCAA TTTAAGGAGCACATGAAAGCACACTCCACTGAGAGTTTCAA < 41bp 0.768117651729425 0.383750041542477 NA NA prediction 0.536235303458849 Functional Loss - ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43161825 chr5:43161823 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_739 0 0 0 0 1 ZNF131 chr5:43161811 3'AG 43161811 Downstream 13bp
310 chr1 1268701 1268701 1 + C G HNSC 1268703 + 1268683 1268723 41 GCGCCGGGTCAAGGGGTTCCACTCCTGCTGCTACGACTGTG GCGCCGGGTCAAGGGGTTGCACTCCTGCTGCTACGACTGTG < 41bp 0.767506986491101 0.42393160996845 NA NA prediction 0.535013972982203 Functional Loss - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1268703 chr1:1268701 nonsynonymous SNV 0.992 4 19 hm6Am_associated_SNPs_743 0 0 0 0 2 TAS1R3 chr1:1268639 3'AG 1268639 Downstream 63bp
311 chr1 1268701 1268701 1 + C G HNSC 1268703 + 1268683 1268723 41 GCGCCGGGTCAAGGGGTTCCACTCCTGCTGCTACGACTGTG GCGCCGGGTCAAGGGGTTGCACTCCTGCTGCTACGACTGTG < 41bp 0.767506986491101 0.42393160996845 NA NA prediction 0.535013972982203 Functional Loss - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1268703 chr1:1268701 nonsynonymous SNV 0.992 4 19 hm6Am_associated_SNPs_743 0 0 0 0 2 TAS1R3 chr1:1268759 5'GT 1268759 Upstream 59bp
312 chr14 61448049 61448049 1 + C G rs17097938 61448051 + 61448031 61448071 41 GGGCTGGTATGTCTCTGTCCAGCAGCCTGAAGAAGCGGAGG GGGCTGGTATGTCTCTGTGCAGCAGCCTGAAGAAGCGGAGG < 41bp 0.879665662035175 0.612988706224055 NA NA prediction 0.533353911622239 Functional Loss - SLC38A6 ENSG00000139974 CDS Human protein_coding chr14:61448051 chr14:61448049 synonymous SNV . 0 19 hm6Am_associated_SNPs_747 0 0 1 0 1 SLC38A6 chr14:61448100 5'GT 61448100 Upstream 52bp
313 chr10 119003569 119003569 1 + C G BLCA 119003571 + 119003551 119003591 41 GGCCAGTGCACACTGCCTCCATCTCAGACAGCTTCCAGAGC GGCCAGTGCACACTGCCTGCATCTCAGACAGCTTCCAGAGC < 41bp 0.765614408430303 0.437706835452262 NA NA prediction 0.531228816860606 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119003571 chr10:119003569 nonsynonymous SNV 0.018 0 19 hm6Am_associated_SNPs_752 0 0 0 0 1 SLC18A2 chr10:119003482 3'AG 119003482 Downstream 88bp
314 chr1 155296440 155296440 1 + C G rs111746182 155296442 + 155296422 155296462 41 GTGGTTGTCCCTCCCTGTCCACAGAGCTGCTGCTCCTGCTG GTGGTTGTCCCTCCCTGTGCACAGAGCTGCTGCTCCTGCTG < 41bp 0.765585539944735 0.479017780579232 NA NA prediction 0.531171079889471 Functional Loss - RUSC1 ENSG00000160753 CDS Human protein_coding chr1:155296442 chr1:155296440 nonsynonymous SNV 0.934 0 19 hm6Am_associated_SNPs_753 0 0 1 0 1 RUSC1 chr1:155296371 3'AG 155296371 Downstream 70bp
315 chr2 220402695 220402695 1 + T G rs538530191 220402697 + 220402677 220402717 41 GAGTGGAGGGTGGGGGGGTCAGCAGTCTGCTCCCCAATCAC GAGTGGAGGGTGGGGGGGGCAGCAGTCTGCTCCCCAATCAC < 41bp 0.922601764597609 0.65749265014302 NA NA prediction 0.530218228909179 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220402697 chr2:220402695 nonsynonymous SNV 0.749 0 19 hm6Am_associated_SNPs_758 0 0 1 0 1 ASIC4 chr2:220402655 3'AG 220402655 Downstream 41bp
316 chr15 71185232 71185232 1 + T G PRAD 71185234 + 71185214 71185254 41 AACCTGGACTGTCTCCTATCATGATTCCCGGGAAATATCGC AACCTGGACTGTCTCCTAGCATGATTCCCGGGAAATATCGC < 41bp 0.764463358413158 0.364662616042459 NA NA prediction 0.528926716826317 Functional Loss - LRRC49 ENSG00000137821 UTR5 Human protein_coding chr15:71185234 chr15:71185232 . . 0 19 hm6Am_associated_SNPs_761 0 0 0 0 1 LRRC49 chr15:71185281 5'GT 71185281 Upstream 50bp
317 chr22 35802661 35802661 1 + C G rs2307340 35802663 + 35802643 35802683 41 GCTGCCGCAACACCCTCACCAACATTGCCATGCGCCCTGGC GCTGCCGCAACACCCTCAGCAACATTGCCATGCGCCCTGGC < 41bp 0.883202416571532 0.620438032164404 NA NA prediction 0.525528768814257 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35802663 chr22:35802661 nonsynonymous SNV 0.996 0 19 hm6Am_associated_SNPs_774 0 0 1 0 1 MCM5 chr22:35802718 5'GT 35802718 Upstream 58bp
318 chr11 60172032 60172032 1 + T G SARC 60172034 + 60172014 60172054 41 TCCAGGACTTCATCCTTCTCACTCCTCCACACTCCAGCCAC TCCAGGACTTCATCCTTCGCACTCCTCCACACTCCAGCCAC < 41bp 0.867389428736859 0.605004355571925 NA NA prediction 0.524770146329869 Functional Loss - MS4A14 ENSG00000166928 CDS Human protein_coding chr11:60172034 chr11:60172032 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_775 0 0 0 0 1 MS4A14 chr11:60172019 3'AG 60172019 Downstream 14bp
319 chr20 46585588 46585588 1 + C G rs75165085 46585590 + 46585570 46585610 41 CAGCCAAAGGAAATGGCCCCACATGGAGGTGGGTGAGGCCC CAGCCAAAGGAAATGGCCGCACATGGAGGTGGGTGAGGCCC < 41bp 0.853162351202202 0.590973112926406 NA NA prediction 0.524378476551592 Functional Loss - SULF2;LINC01522 ENSG00000234967;ENSG00000228503 intergenic Human other chr20:46585590 chr20:46585588 . . 0 19 hm6Am_associated_SNPs_778 0 0 0 0 1 SULF2;LINC01522 chr20:46585597 5'GT 46585597 Upstream 10bp
320 chr5 162943659 162943659 1 + C G SKCM 162943661 + 162943641 162943681 41 ACTGGCAGCAGAGGTTCCCCACACATGTCAAAGATGTGGCC ACTGGCAGCAGAGGTTCCGCACACATGTCAAAGATGTGGCC < 41bp 0.762136272433678 0.431692036130139 NA NA prediction 0.524272544867356 Functional Loss - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162943661 chr5:162943659 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_779 0 0 1 0 1 MAT2B chr5:162943717 5'GT 162943717 Upstream 59bp
321 chr19 58698326 58698326 1 + C G LUSC 58698328 + 58698308 58698348 41 GAGCAGAACATCAGCTTTCCAAACCAGATGTGGTATCTCAG GAGCAGAACATCAGCTTTGCAAACCAGATGTGGTATCTCAG < 41bp 0.759399022041054 0.470847292345689 NA NA prediction 0.518798044082109 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58698328 chr19:58698326 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_789 0 0 1 4 2 ZNF274 chr19:58698314 3'AG 58698314 Downstream 13bp
322 chr19 58698326 58698326 1 + C G LUSC 58698328 + 58698308 58698348 41 GAGCAGAACATCAGCTTTCCAAACCAGATGTGGTATCTCAG GAGCAGAACATCAGCTTTGCAAACCAGATGTGGTATCTCAG < 41bp 0.759399022041054 0.470847292345689 NA NA prediction 0.518798044082109 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58698328 chr19:58698326 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_789 0 0 1 4 2 ZNF274 chr19:58698409 5'GT 58698409 Upstream 84bp
323 chr6 42974215 42974215 1 + C G UCEC 42974217 + 42974197 42974237 41 CCAGGCCCAGCCGCAGCCCCAGCCCCAGCCCCAGCCCCAAG CCAGGCCCAGCCGCAGCCGCAGCCCCAGCCCCAGCCCCAAG < 41bp 0.862718366689814 0.60393101102626 NA NA prediction 0.517574711327109 Functional Loss - PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974217 chr6:42974215 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_792 0 0 1 0 2 PPP2R5D chr6:42974184 3'AG 42974184 Downstream 32bp
324 chr6 42974215 42974215 1 + C G UCEC 42974217 + 42974197 42974237 41 CCAGGCCCAGCCGCAGCCCCAGCCCCAGCCCCAGCCCCAAG CCAGGCCCAGCCGCAGCCGCAGCCCCAGCCCCAGCCCCAAG < 41bp 0.862718366689814 0.60393101102626 NA NA prediction 0.517574711327109 Functional Loss - PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974217 chr6:42974215 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_792 0 0 1 0 2 PPP2R5D chr6:42974201 3'AG 42974201 Downstream 15bp
325 chr11 73105576 73105576 1 + C G LUSC 73105578 + 73105558 73105598 41 CCCGCACCGCCACCATCTCCACACCGTGCAGGGCCTGGCCT CCCGCACCGCCACCATCTGCACACCGTGCAGGGCCTGGCCT < 41bp 0.884621192235064 0.626379343134869 NA NA prediction 0.51648369820039 Functional Loss - RELT ENSG00000054967 CDS Human protein_coding chr11:73105578 chr11:73105576 synonymous SNV . 0 19 hm6Am_associated_SNPs_798 0 0 0 0 1 RELT chr11:73105522 3'AG 73105522 Downstream 55bp
326 chr1 44435905 44435905 1 + C G rs148793639 44435907 + 44435887 44435927 41 CAGCGAGAGACCGGGGTGCCAGGACTGCTTACTCCTCTTCC CAGCGAGAGACCGGGGTGGCAGGACTGCTTACTCCTCTTCC < 41bp 0.758075874718648 0.401752637805424 NA NA prediction 0.516151749437296 Functional Loss - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44435907 chr1:44435905 nonsynonymous SNV 0.008 0 19 hm6Am_associated_SNPs_801 0 0 1 0 1 DPH2 chr1:44435994 5'GT 44435994 Upstream 90bp
327 chr13 61034585 61034585 1 + T G HNSC 61034587 + 61034567 61034607 41 AAAGGATAATGAAGAATCTCAGGCTGCACCAAGGATGCTGC AAAGGATAATGAAGAATCGCAGGCTGCACCAAGGATGCTGC < 41bp 0.792523699036594 0.534838849738579 NA NA prediction 0.515369698596029 Functional Loss - TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61034587 chr13:61034585 synonymous SNV . 0 19 hm6Am_associated_SNPs_804 0 0 1 0 2 TDRD3 chr13:61034514 3'AG 61034514 Downstream 72bp
328 chr13 61034585 61034585 1 + T G HNSC 61034587 + 61034567 61034607 41 AAAGGATAATGAAGAATCTCAGGCTGCACCAAGGATGCTGC AAAGGATAATGAAGAATCGCAGGCTGCACCAAGGATGCTGC < 41bp 0.792523699036594 0.534838849738579 NA NA prediction 0.515369698596029 Functional Loss - TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61034587 chr13:61034585 synonymous SNV . 0 19 hm6Am_associated_SNPs_804 0 0 1 0 2 TDRD3 chr13:61034674 5'GT 61034674 Upstream 90bp
329 chr11 118869172 118869172 1 + T G LIHC 118869174 + 118869154 118869194 41 CAAGGCCATCCGCGCCGCTCAGGTGGAGCGCTATGTGCCCG CAAGGCCATCCGCGCCGCGCAGGTGGAGCGCTATGTGCCCG < 41bp 0.757269418046436 0.337580298579139 NA NA prediction 0.514538836092871 Functional Loss - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118869174 chr11:118869172 synonymous SNV . 0 19 hm6Am_associated_SNPs_808 0 0 1 0 1 CCDC84 chr11:118869140 3'AG 118869140 Downstream 33bp
330 chr7 86802916 86802916 1 + C G BLCA 86802918 + 86802898 86802938 41 GGAAGTTTCAGCAGTTAGCCAAGCATGGTTTACAACTAAAG GGAAGTTTCAGCAGTTAGGCAAGCATGGTTTACAACTAAAG < 41bp 0.770633437389654 0.513514379726344 NA NA prediction 0.51423811532662 Functional Loss - DMTF1 ENSG00000135164 CDS Human protein_coding chr7:86802918 chr7:86802916 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_809 0 0 1 2 2 DMTF1 chr7:86802851 3'AG 86802851 Downstream 66bp
331 chr7 86802916 86802916 1 + C G BLCA 86802918 + 86802898 86802938 41 GGAAGTTTCAGCAGTTAGCCAAGCATGGTTTACAACTAAAG GGAAGTTTCAGCAGTTAGGCAAGCATGGTTTACAACTAAAG < 41bp 0.770633437389654 0.513514379726344 NA NA prediction 0.51423811532662 Functional Loss - DMTF1 ENSG00000135164 CDS Human protein_coding chr7:86802918 chr7:86802916 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_809 0 0 1 2 2 DMTF1 chr7:86802965 5'GT 86802965 Upstream 50bp
332 chr20 42143669 42143669 1 + C G LUSC 42143671 + 42143651 42143691 41 GACCACCCCCAGAATCCTCCAGAAGATCCCAATCAGGACCC GACCACCCCCAGAATCCTGCAGAAGATCCCAATCAGGACCC < 41bp 0.756376124086618 0.401439288416083 NA NA prediction 0.512752248173236 Functional Loss - L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42143671 chr20:42143669 nonsynonymous SNV 0.131 1 19 hm6Am_associated_SNPs_813 0 0 1 0 1 L3MBTL1 chr20:42143649 3'AG 42143649 Downstream 21bp
333 chr19 37726900 37726900 1 + T G rs534234819 37726902 + 37726882 37726922 41 ACTTTACACTCCTAAGCCTCAAGTGATCTCCTTATTGGAAC ACTTTACACTCCTAAGCCGCAAGTGATCTCCTTATTGGAAC < 41bp 0.810975253349016 0.555032696367652 NA NA prediction 0.511885113962727 Functional Loss - ZNF383 ENSG00000188283 CDS Human protein_coding chr19:37726902 chr19:37726900 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_815 0 0 0 0 2 ZNF383 chr19:37726881 3'AG 37726881 Downstream 20bp
334 chr19 37726900 37726900 1 + T G rs534234819 37726902 + 37726882 37726922 41 ACTTTACACTCCTAAGCCTCAAGTGATCTCCTTATTGGAAC ACTTTACACTCCTAAGCCGCAAGTGATCTCCTTATTGGAAC < 41bp 0.810975253349016 0.555032696367652 NA NA prediction 0.511885113962727 Functional Loss - ZNF383 ENSG00000188283 CDS Human protein_coding chr19:37726902 chr19:37726900 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_815 0 0 0 0 2 ZNF383 chr19:37726976 5'GT 37726976 Upstream 77bp
335 chr16 19020546 19020546 1 + C G rs147375289 19020548 + 19020528 19020568 41 TCCACCTGTGAACTTCCTCCAAGAATTGCCAAGCTACCGGT TCCACCTGTGAACTTCCTGCAAGAATTGCCAAGCTACCGGT < 41bp 0.819996378214665 0.564404446212729 NA NA prediction 0.511183864003873 Functional Loss - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19020548 chr16:19020546 synonymous SNV . 0 19 hm6Am_associated_SNPs_818 0 0 0 0 1 TMC7 chr16:19020494 3'AG 19020494 Downstream 53bp
336 chr2 27851980 27851980 1 + C G rs140581189 27851982 + 27851962 27852002 41 TCTGGGGGTCCGCGGCACCCAGTGTGTCTGTTGGTGTTGGG TCTGGGGGTCCGCGGCACGCAGTGTGTCTGTTGGTGTTGGG < 41bp 0.89363990843242 0.638382394276771 NA NA prediction 0.510515028311299 Functional Loss - GPN1 ENSG00000198522 CDS Human protein_coding chr2:27851982 chr2:27851980 nonsynonymous SNV 0.454 2 19 hm6Am_associated_SNPs_820 0 0 1 0 1 GPN1 chr2:27852036 5'GT 27852036 Upstream 57bp
337 chr20 47538507 47538507 1 + C G rs368957600 47538509 + 47538489 47538529 41 CAAGGAGGTGAAGCGGCCCCAGCACTCCCAGCTGCGCAGGG CAAGGAGGTGAAGCGGCCGCAGCACTCCCAGCTGCGCAGGG < 41bp 0.884236913200366 0.629008546782022 NA NA prediction 0.510456732836688 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47538509 chr20:47538507 synonymous SNV . 0 19 hm6Am_associated_SNPs_822 0 0 1 0 1 ARFGEF2 chr20:47538547 5'GT 47538547 Upstream 41bp
338 chr7 150840866 150840866 1 + C G BLCA 150840868 + 150840848 150840888 41 GACGCCCGGGGCCTGACTCCACTGGCATATGCTCGCCGGGC GACGCCCGGGGCCTGACTGCACTGGCATATGCTCGCCGGGC < 41bp 0.753076963704368 0.414794466561352 NA NA prediction 0.506153927408737 Functional Loss - AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150840868 chr7:150840866 nonsynonymous SNV 0.994 1 19 hm6Am_associated_SNPs_829 0 0 1 0 1 AGAP3 chr7:150840824 3'AG 150840824 Downstream 43bp
339 chr17 80422252 80422252 1 + C G rs116334394 80422254 + 80422234 80422274 41 GACTGCAGAGGAAGGAGTCCAACTTTCCCAGCAAAATGCCA GACTGCAGAGGAAGGAGTGCAACTTTCCCAGCAAAATGCCA < 41bp 0.752936749205612 0.483890941952624 NA NA prediction 0.505873498411224 Functional Loss - NARF ENSG00000141562 CDS Human protein_coding chr17:80422254 chr17:80422252 synonymous SNV . 0 19 hm6Am_associated_SNPs_831 0 0 1 0 2 NARF chr17:80422163 3'AG 80422163 Downstream 90bp
340 chr17 80422252 80422252 1 + C G rs116334394 80422254 + 80422234 80422274 41 GACTGCAGAGGAAGGAGTCCAACTTTCCCAGCAAAATGCCA GACTGCAGAGGAAGGAGTGCAACTTTCCCAGCAAAATGCCA < 41bp 0.752936749205612 0.483890941952624 NA NA prediction 0.505873498411224 Functional Loss - NARF ENSG00000141562 CDS Human protein_coding chr17:80422254 chr17:80422252 synonymous SNV . 0 19 hm6Am_associated_SNPs_831 0 0 1 0 2 NARF chr17:80422306 5'GT 80422306 Upstream 55bp
341 chr15 101607535 101607535 1 + C G rs77600629 101607537 + 101607517 101607557 41 AGTGATGTGAGGCTGGCGCCAGCTGCAGCTCCCCACAGTGT AGTGATGTGAGGCTGGCGGCAGCTGCAGCTCCCCACAGTGT < 41bp 0.752023286620813 0.397496727562655 NA NA prediction 0.504046573241625 Functional Loss - LRRK1 ENSG00000259755 ncRNA_intronic Human protein_coding chr15:101607537 chr15:101607535 . . 0 19 hm6Am_associated_SNPs_837 0 0 0 0 2 LRRK1 chr15:101607445 3'AG 101607445 Downstream 91bp
342 chr15 101607535 101607535 1 + C G rs77600629 101607537 + 101607517 101607557 41 AGTGATGTGAGGCTGGCGCCAGCTGCAGCTCCCCACAGTGT AGTGATGTGAGGCTGGCGGCAGCTGCAGCTCCCCACAGTGT < 41bp 0.752023286620813 0.397496727562655 NA NA prediction 0.504046573241625 Functional Loss - LRRK1 ENSG00000259755 ncRNA_intronic Human antisense chr15:101607537 chr15:101607535 . . 0 19 hm6Am_associated_SNPs_837 0 0 0 0 2 LRRK1 chr15:101607592 5'GT 101607592 Upstream 58bp
343 chr3 49212341 49212341 1 + C G KIRC 49212340 + 49212320 49212360 41 CCTGCAGCAGCCTGGGCCCCACAACTTCTACTCTCGCCCAC CCTGCAGCAGCCTGGGCCCCAGAACTTCTACTCTCGCCCAC < 41bp 0.786528373609306 0.534747281285539 NA NA prediction 0.503562184647535 Functional Loss - KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212340 chr3:49212341 nonsynonymous SNV 0.999 3 22 hm6Am_associated_SNPs_840 0 0 0 0 1 KLHDC8B chr3:49212399 5'GT 49212399 Upstream 59bp
344 chr19 4028783 4028783 1 + C G rs2289863 4028785 + 4028765 4028805 41 CCGCCCCATCAACCTCACCCACCTCATGTACCTGTCCTCGG CCGCCCCATCAACCTCACGCACCTCATGTACCTGTCCTCGG < 41bp 0.751478547366028 0.403887763188183 NA NA prediction 0.502957094732056 Functional Loss - PIAS4 ENSG00000105229 CDS Human protein_coding chr19:4028785 chr19:4028783 synonymous SNV . 0 19 hm6Am_associated_SNPs_844 0 0 1 0 2 PIAS4 chr19:4028718 3'AG 4028718 Downstream 66bp
345 chr19 4028783 4028783 1 + C G rs2289863 4028785 + 4028765 4028805 41 CCGCCCCATCAACCTCACCCACCTCATGTACCTGTCCTCGG CCGCCCCATCAACCTCACGCACCTCATGTACCTGTCCTCGG < 41bp 0.751478547366028 0.403887763188183 NA NA prediction 0.502957094732056 Functional Loss - PIAS4 ENSG00000105229 CDS Human protein_coding chr19:4028785 chr19:4028783 synonymous SNV . 0 19 hm6Am_associated_SNPs_844 0 0 1 0 2 PIAS4 chr19:4028846 5'GT 4028846 Upstream 64bp
346 chr1 78511960 78511960 1 + C G rs17101180 78511962 + 78511942 78511982 41 GCCGAGTGGAGGGCTTCTCCAGCATCCAGGAGCTCTACGCC GCCGAGTGGAGGGCTTCTGCAGCATCCAGGAGCTCTACGCC < 41bp 0.889844320903843 0.639621692247379 NA NA prediction 0.500445257312929 Functional Loss - GIPC2 ENSG00000137960 CDS Human protein_coding chr1:78511962 chr1:78511960 nonsynonymous SNV 0.993 2 19 hm6Am_associated_SNPs_846 0 0 1 0 1 GIPC2 chr1:78512018 5'GT 78512018 Upstream 59bp
347 chr21 45732924 45732924 1 + C G LUSC 45732926 + 45732906 45732946 41 TCGCGGGCCTAGTGGGCTCCATCGATAACGACTTCTGCGGC TCGCGGGCCTAGTGGGCTGCATCGATAACGACTTCTGCGGC < 41bp 0.888820314831239 0.638694634829934 NA NA prediction 0.500251360002609 Functional Loss - PFKL ENSG00000141959 CDS Human protein_coding chr21:45732926 chr21:45732924 nonsynonymous SNV 0.935 5 19 hm6Am_associated_SNPs_848 0 0 1 0 1 PFKL chr21:45732861 3'AG 45732861 Downstream 64bp
348 chr19 58864756 58864756 1 + C G rs200176996 58864758 + 58864738 58864778 41 GCCCCAGGGACCCAGACCCCAGGAGGCCTCACCCCACAGCA GCCCCAGGGACCCAGACCGCAGGAGGCCTCACCCCACAGCA < 41bp 0.750009298274474 0.40688889514053 NA NA prediction 0.500018596548947 Functional Loss - A1BG-AS1 ENSG00000268895 ncRNA_exonic Human protein_coding chr19:58864758 chr19:58864756 . . 0 19 hm6Am_associated_SNPs_850 0 0 0 0 3 A1BG chr19:58864687 3'AG 58864687 Downstream 70bp
349 chr19 58864756 58864756 1 + C G rs200176996 58864758 + 58864738 58864778 41 GCCCCAGGGACCCAGACCCCAGGAGGCCTCACCCCACAGCA GCCCCAGGGACCCAGACCGCAGGAGGCCTCACCCCACAGCA < 41bp 0.750009298274474 0.40688889514053 NA NA prediction 0.500018596548947 Functional Loss - A1BG-AS1 ENSG00000268895 ncRNA_exonic Human antisense chr19:58864758 chr19:58864756 . . 0 19 hm6Am_associated_SNPs_850 0 0 0 0 3 A1BG-AS1 chr19:58864745 3'AG 58864745 Downstream 12bp
350 chr19 58864756 58864756 1 + C G rs200176996 58864758 + 58864738 58864778 41 GCCCCAGGGACCCAGACCCCAGGAGGCCTCACCCCACAGCA GCCCCAGGGACCCAGACCGCAGGAGGCCTCACCCCACAGCA < 41bp 0.750009298274474 0.40688889514053 NA NA prediction 0.500018596548947 Functional Loss - A1BG-AS1 ENSG00000268895 ncRNA_exonic Human antisense chr19:58864758 chr19:58864756 . . 0 19 hm6Am_associated_SNPs_850 0 0 0 0 3 A1BG-AS1 chr19:58864840 5'GT 58864840 Upstream 85bp
351 chr9 139750554 139750554 1 + C G rs74827372 139750556 + 139750536 139750576 41 TCCTTGGCCCTTCTGGCCCCAGCTGTGAACTCCACCTGGCT TCCTTGGCCCTTCTGGCCGCAGCTGTGAACTCCACCTGGCT < 41bp 0.749492718155817 0.482420599681525 NA NA prediction 0.498985436311635 Functional Loss - MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139750556 chr9:139750554 nonsynonymous SNV 0.132 2 19 hm6Am_associated_SNPs_852 0 0 1 0 2 MAMDC4 chr9:139750470 3'AG 139750470 Downstream 85bp
352 chr9 139750554 139750554 1 + C G rs74827372 139750556 + 139750536 139750576 41 TCCTTGGCCCTTCTGGCCCCAGCTGTGAACTCCACCTGGCT TCCTTGGCCCTTCTGGCCGCAGCTGTGAACTCCACCTGGCT < 41bp 0.749492718155817 0.482420599681525 NA NA prediction 0.498985436311635 Functional Loss - MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139750556 chr9:139750554 nonsynonymous SNV 0.132 2 19 hm6Am_associated_SNPs_852 0 0 1 0 2 MAMDC4 chr9:139750601 5'GT 139750601 Upstream 48bp
353 chr7 98633065 98633065 1 + C G rs182498686 98633067 + 98633047 98633087 41 CTCAGAAAAACATCCCAGCCACCTTCCAGCTCTTCCTGCCC CTCAGAAAAACATCCCAGGCACCTTCCAGCTCTTCCTGCCC < 41bp 0.748555523940771 0.407543221775157 NA NA prediction 0.497111047881543 Functional Loss - LOC101927550 ENSG00000242687 ncRNA_exonic Human antisense chr7:98633067 chr7:98633065 . . 0 19 hm6Am_associated_SNPs_854 0 0 0 0 1 LOC101927550 chr7:98633040 3'AG 98633040 Downstream 26bp
354 chr22 20929420 20929420 1 + C G PRAD 20929422 + 20929402 20929442 41 GATCACGGAAGCCTTGGCCCAAGGTGGGATGCACATAAGAG GATCACGGAAGCCTTGGCGCAAGGTGGGATGCACATAAGAG < 41bp 0.748446443966118 0.414742554544662 NA NA prediction 0.496892887932237 Functional Loss - MED15 ENSG00000099917 CDS Human protein_coding chr22:20929422 chr22:20929420 synonymous SNV . 0 19 hm6Am_associated_SNPs_856 0 0 1 0 2 MED15 chr22:20929400 3'AG 20929400 Downstream 21bp
355 chr22 20929420 20929420 1 + C G PRAD 20929422 + 20929402 20929442 41 GATCACGGAAGCCTTGGCCCAAGGTGGGATGCACATAAGAG GATCACGGAAGCCTTGGCGCAAGGTGGGATGCACATAAGAG < 41bp 0.748446443966118 0.414742554544662 NA NA prediction 0.496892887932237 Functional Loss - MED15 ENSG00000099917 CDS Human protein_coding chr22:20929422 chr22:20929420 synonymous SNV . 0 19 hm6Am_associated_SNPs_856 0 0 1 0 2 MED15 chr22:20929519 5'GT 20929519 Upstream 100bp
356 chr1 111435055 111435055 1 + C G BRCA 111435054 + 111435034 111435074 41 TCCATAACCTCCCCTCCCTCACGCTGGGCAATGTGTTTGTC TCCATAACCTCCCCTCCCTCAGGCTGGGCAATGTGTTTGTC < 41bp 0.758410669328597 0.51049180136746 NA NA prediction 0.495837735922275 Functional Loss - CD53 ENSG00000143119 CDS Human protein_coding chr1:111435054 chr1:111435055 nonsynonymous SNV 0.447 3 22 hm6Am_associated_SNPs_859 0 0 1 0 1 CD53 chr1:111434967 3'AG 111434967 Downstream 89bp
357 chr2 44457623 44457623 1 + T G KIRC 44457625 + 44457605 44457645 41 CAGGCAAATGAGAATTAATCATAGGGGAAACTACCGACAAC CAGGCAAATGAGAATTAAGCATAGGGGAAACTACCGACAAC < 41bp 0.746851439249216 0.343829552785549 NA NA prediction 0.493702878498432 Functional Loss - PPM1B ENSG00000138032 CDS Human protein_coding chr2:44457625 chr2:44457623 nonsynonymous SNV 0.999 2 19 hm6Am_associated_SNPs_863 0 0 1 0 1 PPM1B chr2:44457552 3'AG 44457552 Downstream 72bp
358 chr10 51748664 51748664 1 + C G rs563040355 51748663 + 51748643 51748683 41 TGAAGTTGGTGAGGACCTCCACATGCACCACGTTCGTGACC TGAAGTTGGTGAGGACCTCCAGATGCACCACGTTCGTGACC < 41bp 0.746620900766627 0.486896160322458 NA NA prediction 0.493241801533254 Functional Loss - AGAP6 ENSG00000204149 CDS Human protein_coding chr10:51748663 chr10:51748664 nonsynonymous SNV 0.000 2 22 hm6Am_associated_SNPs_866 0 0 0 0 1 AGAP6 chr10:51748698 5'GT 51748698 Upstream 35bp
359 chr1 162351759 162351759 1 + C G CESC 162351761 + 162351741 162351781 41 GCTCCTTCCCCCACTTGTCCAAGCCCGTGGCCCCCGGCTCT GCTCCTTCCCCCACTTGTGCAAGCCCGTGGCCCCCGGCTCT < 41bp 0.746474482900416 0.405224787007787 NA NA prediction 0.492948965800831 Functional Loss - C1orf226 ENSG00000239887;ENSG00000254706 CDS Human other chr1:162351761 chr1:162351759 nonsynonymous SNV 0.339 3 19 hm6Am_associated_SNPs_867 0 0 1 0 1 C1orf226 chr1:162351681 3'AG 162351681 Downstream 79bp
360 chr10 112711496 112711496 1 + C G rs568421248 112711498 + 112711478 112711518 41 ACATGATCTGATCTTGGCCCACTGCAACCTCTGCCTCCCAG ACATGATCTGATCTTGGCGCACTGCAACCTCTGCCTCCCAG < 41bp 0.861879750974378 0.615421631580783 NA NA prediction 0.492916238787189 Functional Loss - SHOC2 ENSG00000108061 intronic Human protein_coding chr10:112711498 chr10:112711496 . . 0 19 hm6Am_associated_SNPs_868 0 0 1 0 1 SHOC2 chr10:112711550 5'GT 112711550 Upstream 55bp
361 chr2 74649491 74649491 1 + C G HNSC 74649490 + 74649470 74649510 41 GGTGCTGGAGTGAGTCCCCCACTTATCACTCAGGTGAGGCA GGTGCTGGAGTGAGTCCCCCAGTTATCACTCAGGTGAGGCA < 41bp 0.746008303359376 0.48905089773326 NA NA prediction 0.492016606718751 Functional Loss - WDR54 ENSG00000005448 CDS Human protein_coding chr2:74649490 chr2:74649491 nonsynonymous SNV 0.997 1 22 hm6Am_associated_SNPs_872 0 0 1 0 1 WDR54 chr2:74649502 5'GT 74649502 Upstream 12bp
362 chr19 13007165 13007165 1 + C G COAD 13007164 + 13007144 13007184 41 TCTCGCTGCGGGCCTCAGCCACAGGCATGATCATCATGGAC TCTCGCTGCGGGCCTCAGCCAGAGGCATGATCATCATGGAC < 41bp 0.763370683536111 0.517944222134344 NA NA prediction 0.490852922803534 Functional Loss - GCDH ENSG00000105607 CDS Human protein_coding chr19:13007164 chr19:13007165 nonsynonymous SNV 0.598 5 22 hm6Am_associated_SNPs_877 0 0 1 0 1 GCDH chr19:13007235 5'GT 13007235 Upstream 71bp
363 chr5 131657966 131657966 1 + C G BRCA 131657965 + 131657945 131657985 41 GTTGGCTATATGCTGCTGCCACTGTTTGCTTACTTCATCAG GTTGGCTATATGCTGCTGCCAGTGTTTGCTTACTTCATCAG < 41bp 0.7452460246784 0.484001335410908 NA NA prediction 0.490492049356799 Functional Loss - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131657965 chr5:131657966 nonsynonymous SNV 0.996 2 22 hm6Am_associated_SNPs_878 0 0 0 0 2 SLC22A4 chr5:131657877 3'AG 131657877 Downstream 90bp
364 chr5 131657966 131657966 1 + C G BRCA 131657965 + 131657945 131657985 41 GTTGGCTATATGCTGCTGCCACTGTTTGCTTACTTCATCAG GTTGGCTATATGCTGCTGCCAGTGTTTGCTTACTTCATCAG < 41bp 0.7452460246784 0.484001335410908 NA NA prediction 0.490492049356799 Functional Loss - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131657965 chr5:131657966 nonsynonymous SNV 0.996 2 22 hm6Am_associated_SNPs_878 0 0 0 0 2 SLC22A4 chr5:131658048 5'GT 131658048 Upstream 83bp
365 chr2 173292662 173292662 1 + C G LUSC 173292664 + 173292644 173292684 41 TCTTCGGCTTCTCGCTGGCCATGCACTGGCAACTGCAGCCC TCTTCGGCTTCTCGCTGGGCATGCACTGGCAACTGCAGCCC < 41bp 0.745177439299729 0.396780604700839 NA NA prediction 0.490354878599459 Functional Loss - ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173292664 chr2:173292662 nonsynonymous SNV 0.999 5 19 hm6Am_associated_SNPs_880 0 0 1 0 1 ITGA6 chr2:173292698 5'GT 173292698 Upstream 37bp
366 chr11 63994510 63994510 1 + C G rs34448455 63994509 + 63994489 63994529 41 GGGTGGGCGCTGCACTAGCCACAGCCGATGACTTCCTTGTC GGGTGGGCGCTGCACTAGCCAGAGCCGATGACTTCCTTGTC < 41bp 0.777311980231683 0.53285286434679 NA NA prediction 0.488918231769787 Functional Loss - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63994509 chr11:63994510 nonsynonymous SNV 0.015 4 22 hm6Am_associated_SNPs_882 0 0 1 0 1 NUDT22 chr11:63994604 5'GT 63994604 Upstream 95bp
367 chr11 10500156 10500156 1 + C G UCEC 10500158 + 10500138 10500178 41 GGAAGGGCCCCCCGGCAGCCAGTCCGGCCATGTCTCCCACA GGAAGGGCCCCCCGGCAGGCAGTCCGGCCATGTCTCCCACA < 41bp 0.74420291500482 0.391217727074797 NA NA prediction 0.48840583000964 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10500158 chr11:10500156 nonsynonymous SNV 0.605 0 19 hm6Am_associated_SNPs_884 0 0 0 0 1 AMPD3 chr11:10500073 3'AG 10500073 Downstream 84bp
368 chr19 36033280 36033280 1 + C G HNSC 36033279 + 36033259 36033299 41 GCCCCTACGTGGTGGAGTCCACAGGCGTGTACCTCTCCATA GCCCCTACGTGGTGGAGTCCAGAGGCGTGTACCTCTCCATA < 41bp 0.743744047433338 0.471553945583729 NA NA prediction 0.487488094866676 Functional Loss - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36033279 chr19:36033280 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_887 0 0 0 0 2 GAPDHS chr19:36033221 3'AG 36033221 Downstream 60bp
369 chr19 36033280 36033280 1 + C G HNSC 36033279 + 36033259 36033299 41 GCCCCTACGTGGTGGAGTCCACAGGCGTGTACCTCTCCATA GCCCCTACGTGGTGGAGTCCAGAGGCGTGTACCTCTCCATA < 41bp 0.743744047433338 0.471553945583729 NA NA prediction 0.487488094866676 Functional Loss - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36033279 chr19:36033280 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_887 0 0 0 0 2 GAPDHS chr19:36033311 5'GT 36033311 Upstream 32bp
370 chr10 75533490 75533490 1 + C G SKCM 75533492 + 75533472 75533512 41 CAGCCCCGTCTTTGAGCCCCACATTGCCCAGCCCTCACACA CAGCCCCGTCTTTGAGCCGCACATTGCCCAGCCCTCACACA < 41bp 0.743376441332835 0.393640952503846 NA NA prediction 0.48675288266567 Functional Loss - FUT11 ENSG00000196968 CDS Human protein_coding chr10:75533492 chr10:75533490 synonymous SNV . 0 19 hm6Am_associated_SNPs_888 0 0 1 0 1 FUT11 chr10:75533573 5'GT 75533573 Upstream 84bp
371 chr10 134981000 134981000 1 + C G UCEC 134981002 + 134980982 134981022 41 GGAGCGTGGCCCACGCCGCCATCTTCCAGAGCCTGTGCATC GGAGCGTGGCCCACGCCGGCATCTTCCAGAGCCTGTGCATC < 41bp 0.74259980390688 0.389199373330952 NA NA prediction 0.48519960781376 Functional Loss - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:134981002 chr10:134981000 nonsynonymous SNV 0.828 1 19 hm6Am_associated_SNPs_893 0 0 0 0 1 KNDC1 chr10:134981083 5'GT 134981083 Upstream 84bp
372 chr8 145151539 145151539 1 + C G LUSC 145151538 + 145151518 145151558 41 CTCACGGGCTACTGCGAGCCACCCACCGGGGTGTCACTGCG CTCACGGGCTACTGCGAGCCAGCCACCGGGGTGTCACTGCG < 41bp 0.779726861038523 0.537163152240473 NA NA prediction 0.4851274175961 Functional Loss - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151538 chr8:145151539 nonsynonymous SNV 0.998 4 22 hm6Am_associated_SNPs_894 0 0 1 0 1 CYC1 chr8:145151487 3'AG 145151487 Downstream 53bp
373 chr17 28890266 28890266 1 + C G LUAD 28890265 + 28890245 28890285 41 ACCCATTTGTGAGAGCCTCCACTCCTCCCTGCAAGCGCTGA ACCCATTTGTGAGAGCCTCCAGTCCTCCCTGCAAGCGCTGA < 41bp 0.768231932307796 0.525674935011004 NA NA prediction 0.485113994593583 Functional Loss - TBC1D29 ENSG00000266733 CDS Human protein_coding chr17:28890265 chr17:28890266 nonsynonymous SNV 0.001 0 22 hm6Am_associated_SNPs_895 0 0 0 0 1 TBC1D29 chr17:28890218 3'AG 28890218 Downstream 49bp
374 chr7 2565989 2565989 1 + C G BLCA 2565991 + 2565971 2566011 41 CATCCGCAGCGGCCTCTTCCACTCCCACCTGGAGAACCTGC CATCCGCAGCGGCCTCTTGCACTCCCACCTGGAGAACCTGC < 41bp 0.742165186541558 0.390394697789394 NA NA prediction 0.484330373083116 Functional Loss - LFNG ENSG00000106003 CDS Human protein_coding chr7:2565991 chr7:2565989 nonsynonymous SNV 0.998 1 19 hm6Am_associated_SNPs_896 0 0 0 0 1 LFNG chr7:2566043 5'GT 2566043 Upstream 55bp
375 chr4 184426465 184426465 1 + C G rs11545693 184426467 + 184426447 184426487 41 GTGCGTGGAGTCGCTGCCCCACGACATGCAGAGGAACGTGT GTGCGTGGAGTCGCTGCCGCACGACATGCAGAGGAACGTGT < 41bp 0.898796006305372 0.656832454330378 NA NA prediction 0.483927103949988 Functional Loss - ING2 ENSG00000168556 CDS Human protein_coding chr4:184426467 chr4:184426465 synonymous SNV . 0 19 hm6Am_associated_SNPs_899 0 0 0 0 1 ING2 chr4:184426520 5'GT 184426520 Upstream 56bp
376 chr22 21345960 21345960 1 + C G BLCA 21345959 + 21345939 21345979 41 CACCTGCTCCGGGGCTCCCCACCACCCCCGCAGCGGCGCTA CACCTGCTCCGGGGCTCCCCAGCACCCCCGCAGCGGCGCTA < 41bp 0.741808964526667 0.495070130936019 NA NA prediction 0.483617929053334 Functional Loss - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21345959 chr22:21345960 nonsynonymous SNV 0.974 1 22 hm6Am_associated_SNPs_901 0 0 1 0 1 LZTR1 chr22:21345917 3'AG 21345917 Downstream 44bp
377 chr11 1857751 1857751 1 + C G rs3741231 1857753 + 1857733 1857773 41 CTGGGTGAGCTCCGTCTGCCACTGGGCACCGTGGATCTGCA CTGGGTGAGCTCCGTCTGGCACTGGGCACCGTGGATCTGCA < 41bp 0.741654632458357 0.382149523440743 NA NA prediction 0.483309264916715 Functional Loss - SYT8 ENSG00000149043 CDS Human protein_coding chr11:1857753 chr11:1857751 nonsynonymous SNV 0.315 1 19 hm6Am_associated_SNPs_902 0 0 0 0 2 SYT8 chr11:1857655 3'AG 1857655 Downstream 97bp
378 chr11 1857751 1857751 1 + C G rs3741231 1857753 + 1857733 1857773 41 CTGGGTGAGCTCCGTCTGCCACTGGGCACCGTGGATCTGCA CTGGGTGAGCTCCGTCTGGCACTGGGCACCGTGGATCTGCA < 41bp 0.741654632458357 0.382149523440743 NA NA prediction 0.483309264916715 Functional Loss - SYT8 ENSG00000149043 CDS Human protein_coding chr11:1857753 chr11:1857751 nonsynonymous SNV 0.315 1 19 hm6Am_associated_SNPs_902 0 0 0 0 2 SYT8 chr11:1857822 5'GT 1857822 Upstream 72bp
379 chr10 99498313 99498313 1 + C G rs34979921 99498312 + 99498292 99498332 41 GAGGCTCCCCTGGAGTCTCCACCTTTTCCTACCAAGTCCCC GAGGCTCCCCTGGAGTCTCCAGCTTTTCCTACCAAGTCCCC < 41bp 0.742831206648886 0.501368125574652 NA NA prediction 0.482926162148469 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99498312 chr10:99498313 nonsynonymous SNV 0.008 1 22 hm6Am_associated_SNPs_903 2 0 1 0 1 ZFYVE27 chr10:99498406 5'GT 99498406 Upstream 94bp
380 chr5 168440296 168440296 1 + C G rs531277247 168440298 + 168440278 168440318 41 ATCACCCGCTCTCACATCCCATCTGGGGCCTCTGCTTCCAT ATCACCCGCTCTCACATCGCATCTGGGGCCTCTGCTTCCAT < 41bp 0.883338553942265 0.642864566595585 NA NA prediction 0.480947974693361 Functional Loss - LOC728095 ENSG00000248222 ncRNA_exonic Human antisense chr5:168440298 chr5:168440296 . . 0 19 hm6Am_associated_SNPs_909 0 0 0 0 1 LOC728095 chr5:168440389 5'GT 168440389 Upstream 94bp
381 chr2 220366735 220366735 1 + C G OV 220366734 + 220366714 220366754 41 AGCCCACCGACGCCAGCGTCACCCTTTCTTACTCCTTGGCA AGCCCACCGACGCCAGCGTCAGCCTTTCTTACTCCTTGGCA < 41bp 0.778076579382058 0.538006433386888 NA NA prediction 0.48014029199034 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220366734 chr2:220366735 nonsynonymous SNV 0.969 0 22 hm6Am_associated_SNPs_911 0 0 0 1 1 GMPPA chr2:220366759 5'GT 220366759 Upstream 25bp
382 chr1 33065908 33065908 1 - A C HNSC 33065906 - 33065886 33065926 41 TCCACATAGGATCTATTCTCATCTTCACTCAAGTGCCATCT TCCACATAGGATCTATTCGCATCTTCACTCAAGTGCCATCT < 41bp 0.923565691113709 0.683946778992022 NA NA prediction 0.479237824243373 Functional Loss - ZBTB8A ENSG00000160062;ENSG00000176261 CDS Human other chr1:33065906 chr1:33065908 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_916 0 0 0 0 1 ZBTB8A chr1:33065951 3'AG 33065951 Downstream 44bp
383 chr9 100126312 100126312 1 + C G LUAD 100126314 + 100126294 100126334 41 CCACAGCCTCCAGACCACCCACCCACCTTTGTCCCACAGCT CCACAGCCTCCAGACCACGCACCCACCTTTGTCCCACAGCT < 41bp 0.739537649625267 0.382097930598095 NA NA prediction 0.479075299250534 Functional Loss - LOC100499484-C9ORF174 ENSG00000197816 CDS Human protein_coding chr9:100126314 chr9:100126312 synonymous SNV . 0 19 hm6Am_associated_SNPs_917 0 0 0 0 2 LOC100499484-C9ORF174 chr9:100126300 3'AG 100126300 Downstream 13bp
384 chr9 100126312 100126312 1 + C G LUAD 100126314 + 100126294 100126334 41 CCACAGCCTCCAGACCACCCACCCACCTTTGTCCCACAGCT CCACAGCCTCCAGACCACGCACCCACCTTTGTCCCACAGCT < 41bp 0.739537649625267 0.382097930598095 NA NA prediction 0.479075299250534 Functional Loss - LOC100499484-C9ORF174 ENSG00000197816 CDS Human protein_coding chr9:100126314 chr9:100126312 synonymous SNV . 0 19 hm6Am_associated_SNPs_917 0 0 0 0 2 CCDC180 chr9:100126410 5'GT 100126410 Upstream 99bp
385 chr9 136516800 136516800 1 + C G BRCA 136516799 + 136516779 136516819 41 CATCTTCGCCTCTCAGCTCCACACACACCTGACTGGGAGAA CATCTTCGCCTCTCAGCTCCAGACACACCTGACTGGGAGAA < 41bp 0.801142453933809 0.561969178527749 NA NA prediction 0.47834655081212 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136516799 chr9:136516800 nonsynonymous SNV 0.989 5 22 hm6Am_associated_SNPs_922 0 0 0 0 2 DBH chr9:136516756 3'AG 136516756 Downstream 45bp
386 chr9 136516800 136516800 1 + C G BRCA 136516799 + 136516779 136516819 41 CATCTTCGCCTCTCAGCTCCACACACACCTGACTGGGAGAA CATCTTCGCCTCTCAGCTCCAGACACACCTGACTGGGAGAA < 41bp 0.801142453933809 0.561969178527749 NA NA prediction 0.47834655081212 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136516799 chr9:136516800 nonsynonymous SNV 0.989 5 22 hm6Am_associated_SNPs_922 0 0 0 0 2 DBH chr9:136516899 5'GT 136516899 Upstream 100bp
387 chr15 25472133 25472133 1 + C G LUSC 25472135 + 25472115 25472155 41 TGTCAGTCAGCTAGGCACCCAGCCCCCAGTGCGCTGAAGCT TGTCAGTCAGCTAGGCACGCAGCCCCCAGTGCGCTGAAGCT < 41bp 0.73796452759742 0.397181497470191 NA NA prediction 0.47592905519484 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25472135 chr15:25472133 . . 0 19 hm6Am_associated_SNPs_933 0 0 0 0 2 SNHG14 chr15:25472065 3'AG 25472065 Downstream 69bp
388 chr15 25472133 25472133 1 + C G LUSC 25472135 + 25472115 25472155 41 TGTCAGTCAGCTAGGCACCCAGCCCCCAGTGCGCTGAAGCT TGTCAGTCAGCTAGGCACGCAGCCCCCAGTGCGCTGAAGCT < 41bp 0.73796452759742 0.397181497470191 NA NA prediction 0.47592905519484 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25472135 chr15:25472133 . . 0 19 hm6Am_associated_SNPs_933 0 0 0 0 2 SNHG14 chr15:25472196 5'GT 25472196 Upstream 64bp
389 chr9 139749061 139749061 1 + C G UCEC 139749063 + 139749043 139749083 41 GGAAGGCTGGTCCCGGAACCACCGCGCTGGTGGTCCTGAGC GGAAGGCTGGTCCCGGAAGCACCGCGCTGGTGGTCCTGAGC < 41bp 0.737736040918296 0.432487914840826 NA NA prediction 0.475472081836593 Functional Loss - MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139749063 chr9:139749061 nonsynonymous SNV 0.335 0 19 hm6Am_associated_SNPs_937 0 0 1 0 1 MAMDC4 chr9:139748991 3'AG 139748991 Downstream 71bp
390 chr9 139751010 139751010 1 + C G UCEC 139751012 + 139750992 139751032 41 ACTGTAGCCCCACAGTGACCACCGAGAGAGACAGAGGTTCC ACTGTAGCCCCACAGTGAGCACCGAGAGAGACAGAGGTTCC < 41bp 0.750804617717043 0.514083151664398 NA NA prediction 0.47344293210529 Functional Loss - MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139751012 chr9:139751010 nonsynonymous SNV 0.014 0 19 hm6Am_associated_SNPs_940 0 0 1 0 2 MAMDC4 chr9:139750916 3'AG 139750916 Downstream 95bp
391 chr9 139751010 139751010 1 + C G UCEC 139751012 + 139750992 139751032 41 ACTGTAGCCCCACAGTGACCACCGAGAGAGACAGAGGTTCC ACTGTAGCCCCACAGTGAGCACCGAGAGAGACAGAGGTTCC < 41bp 0.750804617717043 0.514083151664398 NA NA prediction 0.47344293210529 Functional Loss - MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139751012 chr9:139751010 nonsynonymous SNV 0.014 0 19 hm6Am_associated_SNPs_940 0 0 1 0 2 MAMDC4 chr9:139751027 5'GT 139751027 Upstream 18bp
392 chr3 25215976 25215976 1 + C G LGG 25215978 + 25215958 25215998 41 CCCTACCCGTTACTCTTTCCACCTGTCATCGGAGGACTTTC CCCTACCCGTTACTCTTTGCACCTGTCATCGGAGGACTTTC < 41bp 0.73669836420158 0.403569099031418 NA NA prediction 0.473396728403159 Functional Loss - RARB ENSG00000077092 CDS Human protein_coding chr3:25215978 chr3:25215976 nonsynonymous SNV 0.841 1 19 hm6Am_associated_SNPs_941 0 0 0 0 1 RARB chr3:25216066 5'GT 25216066 Upstream 91bp
393 chr6 35705030 35705030 1 + T G SKCM 35705032 + 35705012 35705052 41 CCACCCCTCTGTAGCAACTCACCCATCTGCATCGCCCGTGA CCACCCCTCTGTAGCAACGCACCCATCTGCATCGCCCGTGA < 41bp 0.93349553011574 0.69728987000782 NA NA prediction 0.472411320215842 Functional Loss - ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35705032 chr6:35705030 nonsynonymous SNV 0.447 1 19 hm6Am_associated_SNPs_948 0 0 0 0 2 ARMC12 chr6:35705048 5'GT 35705048 Upstream 19bp
394 chr6 35705030 35705030 1 + T G SKCM 35705032 + 35705012 35705052 41 CCACCCCTCTGTAGCAACTCACCCATCTGCATCGCCCGTGA CCACCCCTCTGTAGCAACGCACCCATCTGCATCGCCCGTGA < 41bp 0.93349553011574 0.69728987000782 NA NA prediction 0.472411320215842 Functional Loss - ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35705032 chr6:35705030 nonsynonymous SNV 0.447 1 19 hm6Am_associated_SNPs_948 0 0 0 0 2 ARMC12 chr6:35705129 5'GT 35705129 Upstream 100bp
395 chr22 38318362 38318362 1 + C G rs565694573 38318361 + 38318341 38318381 41 GCACCACCCCAGCACCCCCCACGCCCCGGCCCCGCTCCAGT GCACCACCCCAGCACCCCCCAGGCCCCGGCCCCGCTCCAGT < 41bp 0.780305084487952 0.544131518417762 NA NA prediction 0.47234713214038 Functional Loss - MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38318361 chr22:38318362 nonsynonymous SNV 0.015 1 22 hm6Am_associated_SNPs_950 0 0 0 0 1 MICALL1 chr22:38318433 5'GT 38318433 Upstream 72bp
396 chr3 47870521 47870521 1 + C G SKCM 47870520 + 47870500 47870540 41 CTTCTCTTCCCCAGAAAGTCACACTGCACATAAAATGGCCC CTTCTCTTCCCCAGAAAGTCAGACTGCACATAAAATGGCCC < 41bp 0.747802658083652 0.511645135909121 NA NA prediction 0.472315044349064 Functional Loss - DHX30 ENSG00000132153 CDS Human protein_coding chr3:47870520 chr3:47870521 nonsynonymous SNV 0.997 4 22 hm6Am_associated_SNPs_951 0 0 1 0 1 DHX30 chr3:47870514 3'AG 47870514 Downstream 8bp
397 chr1 33958846 33958846 1 + C G LUSC 33958848 + 33958828 33958868 41 GCAATTCTCAGTGAGTCCCCATTCTCGGAAAAGCTTCGTAC GCAATTCTCAGTGAGTCCGCATTCTCGGAAAAGCTTCGTAC < 41bp 0.73594460876503 0.384432408033932 NA NA prediction 0.471889217530059 Functional Loss - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33958848 chr1:33958846 nonsynonymous SNV 0.973 1 19 hm6Am_associated_SNPs_955 0 0 0 0 2 ZSCAN20 chr1:33958787 3'AG 33958787 Downstream 60bp
398 chr1 33958846 33958846 1 + C G LUSC 33958848 + 33958828 33958868 41 GCAATTCTCAGTGAGTCCCCATTCTCGGAAAAGCTTCGTAC GCAATTCTCAGTGAGTCCGCATTCTCGGAAAAGCTTCGTAC < 41bp 0.73594460876503 0.384432408033932 NA NA prediction 0.471889217530059 Functional Loss - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33958848 chr1:33958846 nonsynonymous SNV 0.973 1 19 hm6Am_associated_SNPs_955 0 0 0 0 2 ZSCAN20 chr1:33958790 3'AG 33958790 Downstream 57bp
399 chr11 65107956 65107956 1 + C G KIRP 65107955 + 65107935 65107975 41 CGCCTGCCTTTCTTGGACTCACAGACCGGAGTAGCCCAGAG CGCCTGCCTTTCTTGGACTCAGAGACCGGAGTAGCCCAGAG < 41bp 0.735840243225547 0.468146445086001 NA NA prediction 0.471680486451094 Functional Loss - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65107955 chr11:65107956 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_956 0 0 1 0 1 DPF2 chr11:65108016 5'GT 65108016 Upstream 61bp
400 chr17 12847434 12847434 1 + T G PRAD 12847436 + 12847416 12847456 41 AGCCGCTGGAGGAGCACCTCACCATCAGCGGCCGGGAGATC AGCCGCTGGAGGAGCACCGCACCATCAGCGGCCGGGAGATC < 41bp 0.735350871511943 0.307021230029229 NA NA prediction 0.470701743023886 Functional Loss - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12847436 chr17:12847434 nonsynonymous SNV 0.924 4 19 hm6Am_associated_SNPs_959 0 0 1 0 1 ARHGAP44 chr17:12847513 5'GT 12847513 Upstream 80bp
401 chr19 50309985 50309985 1 + C G KIRC 50309984 + 50309964 50310004 41 CAAGGAGCCCGTCTCCCGTCACCTGTGTGAGCTGCTGGCAC CAAGGAGCCCGTCTCCCGTCAGCTGTGTGAGCTGCTGGCAC < 41bp 0.766110242891271 0.531536387482758 NA NA prediction 0.469147710817025 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50309984 chr19:50309985 nonsynonymous SNV 0.998 1 22 hm6Am_associated_SNPs_964 0 0 1 0 1 AP2A1 chr19:50309938 3'AG 50309938 Downstream 48bp
402 chrX 70342095 70342095 1 + C G LAML 70342094 + 70342074 70342114 41 GCCTTGGTTTGGCACTACTCACTGACTGATAGCAGAATTAA GCCTTGGTTTGGCACTACTCAGTGACTGATAGCAGAATTAA < 41bp 0.77253531339949 0.538189679252492 NA NA prediction 0.468691268293996 Functional Loss - MED12 ENSG00000184634 CDS Human protein_coding chrX:70342094 chrX:70342095 nonsynonymous SNV 0.977 2 22 hm6Am_associated_SNPs_965 0 0 1 0 1 MED12 chrX:70342050 3'AG 70342050 Downstream 46bp
403 chr20 44576187 44576187 1 + C G LUAD 44576189 + 44576169 44576209 41 AATGCACTACAAGGCCGTCCACAACACGGCTGTGCTCTTCC AATGCACTACAAGGCCGTGCACAACACGGCTGTGCTCTTCC < 41bp 0.734200545591072 0.394000110489031 NA NA prediction 0.468401091182143 Functional Loss - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44576189 chr20:44576187 synonymous SNV . 0 19 hm6Am_associated_SNPs_966 0 0 1 0 1 PCIF1 chr20:44576163 3'AG 44576163 Downstream 25bp
404 chr12 52702236 52702236 1 + C G CESC 52702238 + 52702218 52702258 41 GTGGCGATCTCTGCGCCTCCACTACTGCCCCTGTTGTCTCC GTGGCGATCTCTGCGCCTGCACTACTGCCCCTGTTGTCTCC < 41bp 0.861208516517347 0.627192579576142 NA NA prediction 0.468031873882409 Functional Loss - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52702238 chr12:52702236 nonsynonymous SNV 0.428 2 19 hm6Am_associated_SNPs_970 0 0 0 0 1 KRT86 chr12:52702188 3'AG 52702188 Downstream 49bp
405 chr3 113667760 113667760 1 + C G ESCA 113667759 + 113667739 113667779 41 TCGGAATGGGGAAAAGAACCACGTGGCTACTTGTTTGTGTG TCGGAATGGGGAAAAGAACCAGGTGGCTACTTGTTTGTGTG < 41bp 0.774230170357989 0.540413753510453 NA NA prediction 0.467632833695072 Functional Loss - ZDHHC23 ENSG00000184307 CDS Human protein_coding chr3:113667759 chr3:113667760 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_971 0 0 1 0 2 ZDHHC23 chr3:113667667 3'AG 113667667 Downstream 94bp
406 chr3 113667760 113667760 1 + C G ESCA 113667759 + 113667739 113667779 41 TCGGAATGGGGAAAAGAACCACGTGGCTACTTGTTTGTGTG TCGGAATGGGGAAAAGAACCAGGTGGCTACTTGTTTGTGTG < 41bp 0.774230170357989 0.540413753510453 NA NA prediction 0.467632833695072 Functional Loss - ZDHHC23 ENSG00000184307 CDS Human protein_coding chr3:113667759 chr3:113667760 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_971 0 0 1 0 2 ZDHHC23 chr3:113667810 5'GT 113667810 Upstream 51bp
407 chr19 10217248 10217248 1 + C G rs11559190 10217247 + 10217227 10217267 41 GGCCTATGCCGCGAACCCGCACTCGTTCGTGTTCACGCGAG GGCCTATGCCGCGAACCCGCAGTCGTTCGTGTTCACGCGAG < 41bp 0.743055053810198 0.510155917892416 NA NA prediction 0.465798271835564 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10217247 chr19:10217248 nonsynonymous SNV 0.997 2 22 hm6Am_associated_SNPs_978 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10217177 3'AG 10217177 Downstream 72bp
408 chr19 10217248 10217248 1 + C G rs11559190 10217247 + 10217227 10217267 41 GGCCTATGCCGCGAACCCGCACTCGTTCGTGTTCACGCGAG GGCCTATGCCGCGAACCCGCAGTCGTTCGTGTTCACGCGAG < 41bp 0.743055053810198 0.510155917892416 NA NA prediction 0.465798271835564 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10217247 chr19:10217248 nonsynonymous SNV 0.997 2 22 hm6Am_associated_SNPs_978 0 0 1 0 2 PPAN;PPAN-P2RY11 chr19:10217347 5'GT 10217347 Upstream 100bp
409 chr7 23293820 23293820 1 + T G CESC 23293822 + 23293802 23293842 41 GCGGTCCTGACCAGTGACTCACCAGCCCTCGTGGGCTCAAA GCGGTCCTGACCAGTGACGCACCAGCCCTCGTGGGCTCAAA < 41bp 0.732497201814385 0.308516333705743 NA NA prediction 0.464994403628769 Functional Loss - GPNMB ENSG00000136235 CDS Human protein_coding chr7:23293822 chr7:23293820 nonsynonymous SNV 0.983 2 19 hm6Am_associated_SNPs_980 0 0 0 0 1 GPNMB chr7:23293788 3'AG 23293788 Downstream 33bp
410 chr5 162943642 162943642 1 + C G UCEC 162943641 + 162943621 162943661 41 CAAGTCAGCAAACATGGATCACTGGCAGCAGAGGTTCCCCA CAAGTCAGCAAACATGGATCAGTGGCAGCAGAGGTTCCCCA < 41bp 0.795603068685333 0.563228854532698 NA NA prediction 0.46474842830527 Functional Loss - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162943641 chr5:162943642 nonsynonymous SNV 1.000 3 22 hm6Am_associated_SNPs_983 0 0 1 0 1 MAT2B chr5:162943717 5'GT 162943717 Upstream 76bp
411 chr8 118540906 118540906 1 + C G LUAD 118540905 + 118540885 118540925 41 ATAAGCTGCCAAATGGTGTCACTTACCACACTGGAACATAT ATAAGCTGCCAAATGGTGTCAGTTACCACACTGGAACATAT < 41bp 0.732213144876626 0.47609035009602 NA NA prediction 0.464426289753253 Functional Loss - MED30 ENSG00000164758 CDS Human protein_coding chr8:118540905 chr8:118540906 nonsynonymous SNV 1.000 1 22 hm6Am_associated_SNPs_984 0 0 1 0 1 MED30 chr8:118540890 3'AG 118540890 Downstream 17bp
412 chr22 20052143 20052143 1 + C G rs34082990 20052145 + 20052125 20052165 41 GATGGACAAGGACCTCTCCCACTGGGAGACCAGAACCTATG GATGGACAAGGACCTCTCGCACTGGGAGACCAGAACCTATG < 41bp 0.732122992230951 0.398590736825577 NA NA prediction 0.464245984461901 Functional Loss - TANGO2 ENSG00000183597 CDS Human protein_coding chr22:20052145 chr22:20052143 synonymous SNV . 0 19 hm6Am_associated_SNPs_985 0 0 1 0 1 TANGO2 chr22:20052065 3'AG 20052065 Downstream 79bp
413 chr5 434045 434045 1 + C G rs575290606 434044 + 434024 434064 41 GGAGGGAGACTCCAGGACCCACAAAGCCCCTGCCCTGGACA GGAGGGAGACTCCAGGACCCAGAAAGCCCCTGCCCTGGACA < 41bp 0.783081067473138 0.551300438811394 NA NA prediction 0.463561257323488 Functional Loss - AHRR ENSG00000063438 CDS Human protein_coding chr5:434044 chr5:434045 nonsynonymous SNV 0.000 0 22 hm6Am_associated_SNPs_988 0 0 1 0 1 AHRR chr5:433968 3'AG 433968 Downstream 78bp
414 chrX 154261704 154261704 1 + C G LUSC 154261703 + 154261683 154261723 41 TTTGAGGGAAATTTTGAGTCACTGGACCTTGCGGAATTTGC TTTGAGGGAAATTTTGAGTCAGTGGACCTTGCGGAATTTGC < 41bp 0.785772823121417 0.554277628158824 NA NA prediction 0.462990389925185 Functional Loss - FUNDC2 ENSG00000165775 CDS Human protein_coding chrX:154261703 chrX:154261704 nonsynonymous SNV 0.997 0 22 hm6Am_associated_SNPs_991 0 0 1 0 1 FUNDC2 chrX:154261678 3'AG 154261678 Downstream 27bp
415 chr6 30558394 30558394 1 + C G rs568319942 30558396 + 30558376 30558416 41 GGAGGAGCAGAGTGTTAGCCAAATCGATGGTGACTTTGAAG GGAGGAGCAGAGTGTTAGGCAAATCGATGGTGACTTTGAAG < 41bp 0.836250254040251 0.604760784260537 NA NA prediction 0.462978939559428 Functional Loss - ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30558396 chr6:30558394 nonsynonymous SNV 0.980 2 19 hm6Am_associated_SNPs_992 0 0 1 0 1 ABCF1 chr6:30558312 3'AG 30558312 Downstream 83bp
416 chr9 132397491 132397491 1 + C G STAD 132397490 + 132397470 132397510 41 GCCTCTGCCCTCCCCAGGCCACCTCACCGATCAGCACCTGG GCCTCTGCCCTCCCCAGGCCAGCTCACCGATCAGCACCTGG < 41bp 0.730428208106764 0.478149682746801 NA NA prediction 0.460856416213527 Functional Loss - NTMT1 ENSG00000148335 CDS Human protein_coding chr9:132397490 chr9:132397491 nonsynonymous SNV 0.947 3 22 hm6Am_associated_SNPs_997 0 0 1 0 1 NTMT1 chr9:132397487 3'AG 132397487 Downstream 5bp
417 chr11 60229956 60229956 1 + C G LAML 60229955 + 60229935 60229975 41 CTCTTCAGGAGGATGTCTTCACTGGTGGGCCCCACGCAAAG CTCTTCAGGAGGATGTCTTCAGTGGTGGGCCCCACGCAAAG < 41bp 0.774054506436575 0.544448942556633 NA NA prediction 0.459211127759884 Functional Loss - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60229955 chr11:60229956 nonsynonymous SNV 0.000 0 22 hm6Am_associated_SNPs_1000 0 0 0 0 2 MS4A1 chr11:60229958 5'GT 60229958 Upstream 3bp
418 chr11 60229956 60229956 1 + C G LAML 60229955 + 60229935 60229975 41 CTCTTCAGGAGGATGTCTTCACTGGTGGGCCCCACGCAAAG CTCTTCAGGAGGATGTCTTCAGTGGTGGGCCCCACGCAAAG < 41bp 0.774054506436575 0.544448942556633 NA NA prediction 0.459211127759884 Functional Loss - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60229955 chr11:60229956 nonsynonymous SNV 0.000 0 22 hm6Am_associated_SNPs_1000 0 0 0 0 2 MS4A1 chr11:60230006 5'GT 60230006 Upstream 51bp
419 chr17 7750173 7750173 1 + C G LGG 7750172 + 7750152 7750192 41 GGGCTGCCACTGCCTCCACCACCATTACCACCACCACCACC GGGCTGCCACTGCCTCCACCAGCATTACCACCACCACCACC < 41bp 0.798397101971433 0.569404146280796 NA NA prediction 0.457985911381275 Functional Loss - KDM6B ENSG00000132510 CDS Human protein_coding chr17:7750172 chr17:7750173 nonsynonymous SNV 0.969 1 22 hm6Am_associated_SNPs_1006 0 0 0 0 1 KDM6B chr17:7750137 3'AG 7750137 Downstream 37bp
420 chr1 28880177 28880177 1 + T G UCEC 28880179 + 28880159 28880199 41 CCTACATGGATGAGAACTTCATCTCCAGAGCCTTTGCCACC CCTACATGGATGAGAACTGCATCTCCAGAGCCTTTGCCACC < 41bp 0.728916543502455 0.303001180475119 NA NA prediction 0.457833087004909 Functional Loss - TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28880179 chr1:28880177 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1008 0 0 1 0 2 TRNAU1AP chr1:28880152 3'AG 28880152 Downstream 26bp
421 chr1 28880177 28880177 1 + T G UCEC 28880179 + 28880159 28880199 41 CCTACATGGATGAGAACTTCATCTCCAGAGCCTTTGCCACC CCTACATGGATGAGAACTGCATCTCCAGAGCCTTTGCCACC < 41bp 0.728916543502455 0.303001180475119 NA NA prediction 0.457833087004909 Functional Loss - TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28880179 chr1:28880177 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1008 0 0 1 0 2 TRNAU1AP chr1:28880249 5'GT 28880249 Upstream 73bp
422 chr2 113941019 113941019 1 + C G BLCA 113941021 + 113941001 113941041 41 CCATCTATAAACCACACTCCATCTGCTGGGCCTCAGTGGCT CCATCTATAAACCACACTGCATCTGCTGGGCCTCAGTGGCT < 41bp 0.728528074973749 0.44012558831658 NA NA prediction 0.457056149947499 Functional Loss - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113941021 chr2:113941019 nonsynonymous SNV 0.011 1 19 hm6Am_associated_SNPs_1010 0 0 0 0 1 PSD4 chr2:113941089 5'GT 113941089 Upstream 71bp
423 chr1 45218810 45218810 1 + C G LAML 45218812 + 45218792 45218832 41 GTTCCCCTACAGCTGCCCCCACTAGGCCTTCCTGCCCTGCA GTTCCCCTACAGCTGCCCGCACTAGGCCTTCCTGCCCTGCA < 41bp 0.728236627582304 0.401033180550399 NA NA prediction 0.456473255164607 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218812 chr1:45218810 nonsynonymous SNV 0.019 0 19 hm6Am_associated_SNPs_1014 0 0 1 0 1 KIF2C chr1:45218804 3'AG 45218804 Downstream 7bp
424 chr20 4176272 4176272 1 + C G rs187075470 4176271 + 4176251 4176291 41 CGGCATCCTCACTGTCATGCACTAGCGGTTGTTGGTGAGGT CGGCATCCTCACTGTCATGCAGTAGCGGTTGTTGGTGAGGT < 41bp 0.73786644496193 0.510422436334804 NA NA prediction 0.454888017254252 Functional Loss - LINC01433 ENSG00000230176 ncRNA_exonic Human antisense chr20:4176271 chr20:4176272 . . 0 22 hm6Am_associated_SNPs_1019 0 0 0 0 1 LINC01433 chr20:4176173 3'AG 4176173 Downstream 100bp
425 chr17 48356590 48356590 1 + C G OV 48356589 + 48356569 48356609 41 CCAGCCTGGGCCCAACTCCCACAGAGCCACCCCCTCCCTAC CCAGCCTGGGCCCAACTCCCAGAGAGCCACCCCCTCCCTAC < 41bp 0.789023174672265 0.561981440568745 NA NA prediction 0.45408346820704 Functional Loss - TMEM92 ENSG00000167105 CDS Human protein_coding chr17:48356589 chr17:48356590 nonsynonymous SNV 0.161 1 22 hm6Am_associated_SNPs_1022 0 0 0 0 1 TMEM92 chr17:48356556 3'AG 48356556 Downstream 35bp
426 chr9 35674260 35674260 1 + T G BLCA 35674262 + 35674242 35674282 41 CCTGAAGTTAAGCCTAAATCAGAAGAAGAGGGCTCCCTGAA CCTGAAGTTAAGCCTAAAGCAGAAGAAGAGGGCTCCCTGAA < 41bp 0.726508567982411 0.307572670860019 NA NA prediction 0.453017135964822 Functional Loss - CA9 ENSG00000107159 CDS Human protein_coding chr9:35674262 chr9:35674260 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_1025 0 0 0 0 1 CA9 chr9:35674359 5'GT 35674359 Upstream 100bp
427 chr2 206547875 206547875 1 + C G rs557060826 206547877 + 206547857 206547897 41 AGAGGTGAAGACAAGCCACCAGGACTCAGGAGGGAAACGCT AGAGGTGAAGACAAGCCAGCAGGACTCAGGAGGGAAACGCT < 41bp 0.815055966681343 0.588681453524908 NA NA prediction 0.45274902631287 Functional Loss - NRP2 ENSG00000118257 UTR5 Human protein_coding chr2:206547877 chr2:206547875 . . 0 19 hm6Am_associated_SNPs_1027 0 0 0 0 1 NRP2 chr2:206547815 3'AG 206547815 Downstream 61bp
428 chr17 79503666 79503666 1 + C G rs183485967 79503665 + 79503645 79503685 41 CAGGCAAGGACGAAGAGTTCACCCTCAAGCTCATCAACCGG CAGGCAAGGACGAAGAGTTCAGCCTCAAGCTCATCAACCGG < 41bp 0.726101302950692 0.481113305713429 NA NA prediction 0.452202605901385 Functional Loss - FSCN2 ENSG00000186765 CDS Human protein_coding chr17:79503665 chr17:79503666 nonsynonymous SNV 0.958 0 22 hm6Am_associated_SNPs_1030 0 0 0 0 2 FSCN2 chr17:79503576 3'AG 79503576 Downstream 91bp
429 chr17 79503666 79503666 1 + C G rs183485967 79503665 + 79503645 79503685 41 CAGGCAAGGACGAAGAGTTCACCCTCAAGCTCATCAACCGG CAGGCAAGGACGAAGAGTTCAGCCTCAAGCTCATCAACCGG < 41bp 0.726101302950692 0.481113305713429 NA NA prediction 0.452202605901385 Functional Loss - FSCN2 ENSG00000186765 CDS Human protein_coding chr17:79503665 chr17:79503666 nonsynonymous SNV 0.958 0 22 hm6Am_associated_SNPs_1030 0 0 0 0 2 FSCN2 chr17:79503648 3'AG 79503648 Downstream 19bp
430 chr11 119002676 119002676 1 + C G PRAD 119002678 + 119002658 119002698 41 CTTAGATCACATCCGTCGCCAGACCTCATTGGATCGTAAGT CTTAGATCACATCCGTCGGCAGACCTCATTGGATCGTAAGT < 41bp 0.890108097900858 0.664274310017084 NA NA prediction 0.451667575767549 Functional Loss - HINFP ENSG00000172273 CDS Human protein_coding chr11:119002678 chr11:119002676 synonymous SNV . 0 19 hm6Am_associated_SNPs_1033 0 0 1 0 1 HINFP chr11:119002692 5'GT 119002692 Upstream 17bp
431 chr4 83352011 83352011 1 + T G UCEC 83352013 + 83351993 83352033 41 TTTCGGTCCCCGCCGAAGTCACCGTGATCCTGTTAGATATC TTTCGGTCCCCGCCGAAGGCACCGTGATCCTGTTAGATATC < 41bp 0.934139874002247 0.708364710056966 NA NA prediction 0.451550327890562 Functional Loss - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83352013 chr4:83352011 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1035 0 0 1 0 2 ENOPH1 chr4:83352037 5'GT 83352037 Upstream 27bp
432 chr4 83352011 83352011 1 + T G UCEC 83352013 + 83351993 83352033 41 TTTCGGTCCCCGCCGAAGTCACCGTGATCCTGTTAGATATC TTTCGGTCCCCGCCGAAGGCACCGTGATCCTGTTAGATATC < 41bp 0.934139874002247 0.708364710056966 NA NA prediction 0.451550327890562 Functional Loss - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83352013 chr4:83352011 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1035 0 0 1 0 2 ENOPH1 chr4:83352066 5'GT 83352066 Upstream 56bp
433 chr1 114522210 114522210 1 + C G STAD 114522209 + 114522189 114522229 41 ACCCCTCCAAGGACAGCAGCACCACCTTGTGGAGTACATGG ACCCCTCCAAGGACAGCAGCAGCACCTTGTGGAGTACATGG < 41bp 0.72554962504191 0.489537033369231 NA NA prediction 0.451099250083819 Functional Loss - OLFML3 ENSG00000116774 CDS Human protein_coding chr1:114522209 chr1:114522210 nonsynonymous SNV 1.000 1 22 hm6Am_associated_SNPs_1038 0 0 0 0 1 OLFML3 chr1:114522252 5'GT 114522252 Upstream 43bp
434 chr14 76928915 76928915 1 + C G STAD 76928914 + 76928894 76928934 41 TTGAGTACAGCTGCCCGGCCACCAACGAGTGCGAGATCACC TTGAGTACAGCTGCCCGGCCAGCAACGAGTGCGAGATCACC < 41bp 0.781895721460461 0.556441369548104 NA NA prediction 0.450908703824713 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76928914 chr14:76928915 nonsynonymous SNV 0.996 2 22 hm6Am_associated_SNPs_1040 0 0 1 0 2 ESRRB chr14:76928888 3'AG 76928888 Downstream 28bp
435 chr14 76928915 76928915 1 + C G STAD 76928914 + 76928894 76928934 41 TTGAGTACAGCTGCCCGGCCACCAACGAGTGCGAGATCACC TTGAGTACAGCTGCCCGGCCAGCAACGAGTGCGAGATCACC < 41bp 0.781895721460461 0.556441369548104 NA NA prediction 0.450908703824713 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76928914 chr14:76928915 nonsynonymous SNV 0.996 2 22 hm6Am_associated_SNPs_1040 0 0 1 0 2 ESRRB chr14:76929004 5'GT 76929004 Upstream 90bp
436 chr12 54903761 54903761 1 + T G KIRP 54903763 + 54903743 54903783 41 ATGATTAACCCTGCTAATTCAGATACAGTGAGTGCCCTTTT ATGATTAACCCTGCTAATGCAGATACAGTGAGTGCCCTTTT < 41bp 0.725225625787271 0.344191780951576 NA NA prediction 0.450451251574542 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54903763 chr12:54903761 nonsynonymous SNV 0.998 1 19 hm6Am_associated_SNPs_1041 0 0 0 0 1 NCKAP1L chr12:54903769 5'GT 54903769 Upstream 9bp
437 chr19 47542697 47542697 1 + C G SKCM 47542696 + 47542676 47542716 41 GACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCC GACTGGGCGCCTTCGGGCCCAGGCCCTGGGCCTTGTGGCCC < 41bp 0.785675054675013 0.560707517180886 NA NA prediction 0.449935074988255 Functional Loss - NPAS1 ENSG00000130751 CDS Human protein_coding chr19:47542696 chr19:47542697 nonsynonymous SNV 0.721 0 22 hm6Am_associated_SNPs_1043 0 0 1 0 1 NPAS1 chr19:47542665 3'AG 47542665 Downstream 33bp
438 chr16 335160 335160 1 + T G STAD 335162 + 335142 335182 41 ATCTGTCGCGCTTCCTGGTCACACACAGCATGCGCCTGGTC ATCTGTCGCGCTTCCTGGGCACACACAGCATGCGCCTGGTC < 41bp 0.724101477146214 0.30083070771603 NA NA prediction 0.448202954292428 Functional Loss - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:335162 chr16:335160 nonsynonymous SNV 0.293 0 19 hm6Am_associated_SNPs_1047 0 0 1 0 2 PDIA2 chr16:335084 3'AG 335084 Downstream 77bp
439 chr16 335160 335160 1 + T G STAD 335162 + 335142 335182 41 ATCTGTCGCGCTTCCTGGTCACACACAGCATGCGCCTGGTC ATCTGTCGCGCTTCCTGGGCACACACAGCATGCGCCTGGTC < 41bp 0.724101477146214 0.30083070771603 NA NA prediction 0.448202954292428 Functional Loss - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:335162 chr16:335160 nonsynonymous SNV 0.293 0 19 hm6Am_associated_SNPs_1047 0 0 1 0 2 PDIA2 chr16:335200 5'GT 335200 Upstream 41bp
440 chr22 25011062 25011062 1 + C G GBM 25011061 + 25011041 25011081 41 CCCCCAGGCTGGCCTTTGCCACCATGTTCAACAGCTCGGAG CCCCCAGGCTGGCCTTTGCCAGCATGTTCAACAGCTCGGAG < 41bp 0.764034597752692 0.539985213437763 NA NA prediction 0.448098768629858 Functional Loss - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25011061 chr22:25011062 nonsynonymous SNV 0.017 0 22 hm6Am_associated_SNPs_1048 0 0 1 0 1 GGT1 chr22:25011008 3'AG 25011008 Downstream 55bp
441 chr3 38519382 38519382 1 + C G SKCM 38519384 + 38519364 38519404 41 GGCCACTGAGGAGAACCCCCAGGTGTACTTCTGCTGCTGTG GGCCACTGAGGAGAACCCGCAGGTGTACTTCTGCTGCTGTG < 41bp 0.724029253081794 0.400513495255787 NA NA prediction 0.448058506163588 Functional Loss - ACVR2B ENSG00000114739 CDS Human protein_coding chr3:38519384 chr3:38519382 synonymous SNV . 0 19 hm6Am_associated_SNPs_1049 0 0 1 0 2 ACVR2B chr3:38519352 3'AG 38519352 Downstream 31bp
442 chr3 38519382 38519382 1 + C G SKCM 38519384 + 38519364 38519404 41 GGCCACTGAGGAGAACCCCCAGGTGTACTTCTGCTGCTGTG GGCCACTGAGGAGAACCCGCAGGTGTACTTCTGCTGCTGTG < 41bp 0.724029253081794 0.400513495255787 NA NA prediction 0.448058506163588 Functional Loss - ACVR2B ENSG00000114739 CDS Human protein_coding chr3:38519384 chr3:38519382 synonymous SNV . 0 19 hm6Am_associated_SNPs_1049 0 0 1 0 2 ACVR2B chr3:38519461 5'GT 38519461 Upstream 80bp
443 chr1 20656786 20656786 1 + C G BRCA 20656785 + 20656765 20656805 41 GCAGCCAGTGCACCGAGGCCACCCGCGGCTCCTCTTCGTGA GCAGCCAGTGCACCGAGGCCAGCCGCGGCTCCTCTTCGTGA < 41bp 0.723950522409711 0.464231320307141 NA NA prediction 0.447901044819422 Functional Loss - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20656785 chr1:20656786 nonsynonymous SNV 0.772 4 22 hm6Am_associated_SNPs_1050 0 0 0 0 1 VWA5B1 chr1:20656875 5'GT 20656875 Upstream 90bp
444 chrX 47041239 47041239 1 + C G SKCM 47041238 + 47041218 47041258 41 TCCCACCGGCTACCAGCCCCACTGCCCAGGAATCCTACAGC TCCCACCGGCTACCAGCCCCAGTGCCCAGGAATCCTACAGC < 41bp 0.807666078364249 0.583820823449789 NA NA prediction 0.44769050982892 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47041238 chrX:47041239 nonsynonymous SNV 0.997 0 22 hm6Am_associated_SNPs_1051 0 0 1 0 2 RBM10 chrX:47041148 3'AG 47041148 Downstream 92bp
445 chrX 47041239 47041239 1 + C G SKCM 47041238 + 47041218 47041258 41 TCCCACCGGCTACCAGCCCCACTGCCCAGGAATCCTACAGC TCCCACCGGCTACCAGCCCCAGTGCCCAGGAATCCTACAGC < 41bp 0.807666078364249 0.583820823449789 NA NA prediction 0.44769050982892 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47041238 chrX:47041239 nonsynonymous SNV 0.997 0 22 hm6Am_associated_SNPs_1051 0 0 1 0 2 RBM10 chrX:47041265 5'GT 47041265 Upstream 27bp
446 chr16 4927071 4927071 1 + C G TGCT 4927070 + 4927050 4927090 41 TCTCCAAGGATGCCATCGTCACAGGCCCTGCCCCCGGGTCC TCTCCAAGGATGCCATCGTCAGAGGCCCTGCCCCCGGGTCC < 41bp 0.723721051005903 0.448820024352557 NA NA prediction 0.447442102011805 Functional Loss - UBN1 ENSG00000118900 CDS Human protein_coding chr16:4927070 chr16:4927071 nonsynonymous SNV 0.975 4 22 hm6Am_associated_SNPs_1054 0 0 1 0 1 UBN1 chr16:4927112 5'GT 4927112 Upstream 42bp
447 chr1 197326047 197326047 1 + T G rs533227950 197326049 + 197326029 197326069 41 GAATGTGTGGAGCTGTCCTCAGAGAAACAATATGGACGCAT GAATGTGTGGAGCTGTCCGCAGAGAAACAATATGGACGCAT < 41bp 0.723185969800537 0.319778053517759 NA NA prediction 0.446371939601075 Functional Loss - CRB1 ENSG00000134376 CDS Human protein_coding chr1:197326049 chr1:197326047 nonsynonymous SNV 0.976 1 19 hm6Am_associated_SNPs_1057 0 0 0 0 2 CRB1 chr1:197325961 3'AG 197325961 Downstream 87bp
448 chr1 197326047 197326047 1 + T G rs533227950 197326049 + 197326029 197326069 41 GAATGTGTGGAGCTGTCCTCAGAGAAACAATATGGACGCAT GAATGTGTGGAGCTGTCCGCAGAGAAACAATATGGACGCAT < 41bp 0.723185969800537 0.319778053517759 NA NA prediction 0.446371939601075 Functional Loss - CRB1 ENSG00000134376 CDS Human protein_coding chr1:197326049 chr1:197326047 nonsynonymous SNV 0.976 1 19 hm6Am_associated_SNPs_1057 0 0 0 0 2 CRB1 chr1:197326143 5'GT 197326143 Upstream 97bp
449 chr4 2966984 2966984 1 + C G rs531598631 2966986 + 2966966 2967006 41 CTAGTCCTCTGCATCCCGCCACAAAAGCATCAGTTGGTCCA CTAGTCCTCTGCATCCCGGCACAAAAGCATCAGTTGGTCCA < 41bp 0.723168032917411 0.363408869939823 NA NA prediction 0.446336065834823 Functional Loss - GRK4 ENSG00000125388 CDS Human protein_coding chr4:2966986 chr4:2966984 nonsynonymous SNV 0.011 0 19 hm6Am_associated_SNPs_1058 0 0 0 0 1 GRK4 chr4:2966970 3'AG 2966970 Downstream 15bp
450 chr6 54214623 54214623 1 + C G rs149997439 54214625 + 54214605 54214645 41 AAACGGCATGCCACGAAGCCATGTCCCAACAACGTAGAAAA AAACGGCATGCCACGAAGGCATGTCCCAACAACGTAGAAAA < 41bp 0.723056359509085 0.365176291032891 NA NA prediction 0.44611271901817 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54214625 chr6:54214623 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1059 0 0 0 2 1 TINAG chr6:54214694 5'GT 54214694 Upstream 72bp
451 chr7 4827884 4827884 1 + C G rs77560694 4827886 + 4827866 4827906 41 GCAGTTCCAGGGTCTTTTCCAATACCTGCTGCGCCCCAAGG GCAGTTCCAGGGTCTTTTGCAATACCTGCTGCGCCCCAAGG < 41bp 0.720972164876453 0.366104619960652 NA NA prediction 0.441944329752907 Functional Loss - AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4827886 chr7:4827884 nonsynonymous SNV 0.682 0 19 hm6Am_associated_SNPs_1071 0 0 1 0 2 AP5Z1 chr7:4827785 3'AG 4827785 Downstream 100bp
452 chr7 4827884 4827884 1 + C G rs77560694 4827886 + 4827866 4827906 41 GCAGTTCCAGGGTCTTTTCCAATACCTGCTGCGCCCCAAGG GCAGTTCCAGGGTCTTTTGCAATACCTGCTGCGCCCCAAGG < 41bp 0.720972164876453 0.366104619960652 NA NA prediction 0.441944329752907 Functional Loss - AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4827886 chr7:4827884 nonsynonymous SNV 0.682 0 19 hm6Am_associated_SNPs_1071 0 0 1 0 2 AP5Z1 chr7:4827925 5'GT 4827925 Upstream 42bp
453 chr16 84225198 84225198 1 + C G rs529653331 84225197 + 84225177 84225217 41 GCCAGGCCGTGTCCTTGCTCACGGAGTACGCGGCCAGCCTG GCCAGGCCGTGTCCTTGCTCAGGGAGTACGCGGCCAGCCTG < 41bp 0.752815375131981 0.532341417285967 NA NA prediction 0.440947915692028 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84225197 chr16:84225198 nonsynonymous SNV 0.000 1 22 hm6Am_associated_SNPs_1075 0 0 0 0 1 ADAD2 chr16:84225254 5'GT 84225254 Upstream 57bp
454 chr8 145730063 145730063 1 + C G LUSC 145730062 + 145730042 145730082 41 CTATGGGGCAGAGGCCCATCACCTTCCTGCGCCAGGTGAGG CTATGGGGCAGAGGCCCATCAGCTTCCTGCGCCAGGTGAGG < 41bp 0.75804227068787 0.538215123817582 NA NA prediction 0.439654293740575 Functional Loss - GPT ENSG00000167701 CDS Human protein_coding chr8:145730062 chr8:145730063 nonsynonymous SNV 0.998 1 22 hm6Am_associated_SNPs_1079 0 0 0 0 1 GPT chr8:145730076 5'GT 145730076 Upstream 14bp
455 chr11 22360149 22360149 1 + C G LGG 22360148 + 22360128 22360168 41 AAGAATTTTGCTGGAAAATCACTCGGCCAGATCTACAGGTA AAGAATTTTGCTGGAAAATCAGTCGGCCAGATCTACAGGTA < 41bp 0.790667451845444 0.571311536730804 NA NA prediction 0.438711830229281 Functional Loss - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22360148 chr11:22360149 nonsynonymous SNV 0.999 1 22 hm6Am_associated_SNPs_1084 0 0 0 0 1 SLC17A6 chr11:22360165 5'GT 22360165 Upstream 17bp
456 chr5 139740394 139740394 1 + C G rs370367507 139740393 + 139740373 139740413 41 ACTGTCTACCCACCTTCATCACAGGTGGGTACTGTTTGAGG ACTGTCTACCCACCTTCATCAGAGGTGGGTACTGTTTGAGG < 41bp 0.768554896973572 0.549449013320133 NA NA prediction 0.438211767306879 Functional Loss - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139740393 chr5:139740394 nonsynonymous SNV 0.613 1 22 hm6Am_associated_SNPs_1086 0 0 0 0 1 SLC4A9 chr5:139740325 3'AG 139740325 Downstream 70bp
457 chr8 22054229 22054229 1 + C G LUAD 22054231 + 22054211 22054251 41 TCACCAAGCTCAACGGCTCCATCACCAGCCCGGGCTGGCCC TCACCAAGCTCAACGGCTGCATCACCAGCCCGGGCTGGCCC < 41bp 0.719052790549992 0.367454131580302 NA NA prediction 0.438105581099983 Functional Loss - BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054231 chr8:22054229 nonsynonymous SNV 0.997 3 19 hm6Am_associated_SNPs_1087 0 0 1 0 1 BMP1 chr8:22054193 3'AG 22054193 Downstream 37bp
458 chr8 142176373 142176373 1 + C G rs143357568 142176372 + 142176352 142176392 41 CTCGCACCTGCATGTCACCCACAGGCGCATGGTGGTCAGCA CTCGCACCTGCATGTCACCCAGAGGCGCATGGTGGTCAGCA < 41bp 0.718648945105391 0.466909980240168 NA NA prediction 0.437297890210783 Functional Loss - DENND3 ENSG00000105339 CDS Human protein_coding chr8:142176372 chr8:142176373 nonsynonymous SNV 0.365 0 22 hm6Am_associated_SNPs_1091 0 0 0 0 1 DENND3 chr8:142176289 3'AG 142176289 Downstream 85bp
459 chr7 100552733 100552733 1 + C G rs79685001 100552732 + 100552712 100552752 41 CACGCAGGACAACTCGCATCACTTCTCAGATGACCACACAG CACGCAGGACAACTCGCATCAGTTCTCAGATGACCACACAG < 41bp 0.765126806507999 0.546535252382749 NA NA prediction 0.4371831082505 Functional Loss - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100552732 chr7:100552733 nonsynonymous SNV 0.001 0 22 hm6Am_associated_SNPs_1092 0 0 0 0 1 MUC3A chr7:100552774 5'GT 100552774 Upstream 42bp
460 chr1 205197808 205197808 1 + C G rs112979653 205197807 + 205197787 205197827 41 ACCTCCGGCCTGGGGAGACCACGGGTGCTAACTCTGCTGGC ACCTCCGGCCTGGGGAGACCAGGGGTGCTAACTCTGCTGGC < 41bp 0.762720654025768 0.544163193717367 NA NA prediction 0.437114920616804 Functional Loss - TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205197807 chr1:205197808 nonsynonymous SNV 0.994 0 22 hm6Am_associated_SNPs_1093 0 0 0 0 1 TMCC2 chr1:205197899 5'GT 205197899 Upstream 92bp
461 chr3 239772 239772 1 + C G rs574525732 239774 + 239754 239794 41 AGCAGCAGCCGCGCGGGCCCAGGTACCCCCGCCCCAGACGG AGCAGCAGCCGCGCGGGCGCAGGTACCCCCGCCCCAGACGG < 41bp 0.893247191499493 0.674699804166979 NA NA prediction 0.437094774665028 Functional Loss - CHL1 ENSG00000134121;ENSG00000134121 UTR5;UTR3 Human other chr3:239774 chr3:239772 . . 0 19 hm6Am_associated_SNPs_1095 0 0 0 0 1 CHL1 chr3:239775 5'GT 239775 Upstream 4bp
462 chr16 88873546 88873546 1 + C G BLCA 88873545 + 88873525 88873565 41 CCAGCACTGCCGGCTACCCCACCAGCCACCCCGCCTGCAGC CCAGCACTGCCGGCTACCCCAGCAGCCACCCCGCCTGCAGC < 41bp 0.774094708750648 0.556303526474375 NA NA prediction 0.435582364552545 Functional Loss - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88873545 chr16:88873546 nonsynonymous SNV 0.003 0 22 hm6Am_associated_SNPs_1107 0 0 1 0 2 CDT1 chr16:88873459 3'AG 88873459 Downstream 88bp
463 chr16 88873546 88873546 1 + C G BLCA 88873545 + 88873525 88873565 41 CCAGCACTGCCGGCTACCCCACCAGCCACCCCGCCTGCAGC CCAGCACTGCCGGCTACCCCAGCAGCCACCCCGCCTGCAGC < 41bp 0.774094708750648 0.556303526474375 NA NA prediction 0.435582364552545 Functional Loss - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88873545 chr16:88873546 nonsynonymous SNV 0.003 0 22 hm6Am_associated_SNPs_1107 0 0 1 0 2 CDT1 chr16:88873611 5'GT 88873611 Upstream 66bp
464 chr5 139751133 139751133 1 + C G SARC 139751132 + 139751112 139751152 41 TGACCAGGGTCCACCTCTTCACAGCCATCCAGCTTGCCTGT TGACCAGGGTCCACCTCTTCAGAGCCATCCAGCTTGCCTGT < 41bp 0.71775755417423 0.445431433586368 NA NA prediction 0.43551510834846 Functional Loss - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139751132 chr5:139751133 nonsynonymous SNV 1.000 5 22 hm6Am_associated_SNPs_1108 0 0 0 0 2 SLC4A9 chr5:139751036 3'AG 139751036 Downstream 98bp
465 chr5 139751133 139751133 1 + C G SARC 139751132 + 139751112 139751152 41 TGACCAGGGTCCACCTCTTCACAGCCATCCAGCTTGCCTGT TGACCAGGGTCCACCTCTTCAGAGCCATCCAGCTTGCCTGT < 41bp 0.71775755417423 0.445431433586368 NA NA prediction 0.43551510834846 Functional Loss - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139751132 chr5:139751133 nonsynonymous SNV 1.000 5 22 hm6Am_associated_SNPs_1108 0 0 0 0 2 SLC4A9 chr5:139751209 5'GT 139751209 Upstream 77bp
466 chr1 156255757 156255757 1 + C G LUSC 156255756 + 156255736 156255776 41 TGCGCTGCGGGGTCTTTGCCACCTTCCCCATTGTGCTGGGT TGCGCTGCGGGGTCTTTGCCAGCTTCCCCATTGTGCTGGGT < 41bp 0.71756345005598 0.454891563945204 NA NA prediction 0.435126900111959 Functional Loss - TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255756 chr1:156255757 nonsynonymous SNV 0.992 0 22 hm6Am_associated_SNPs_1112 0 0 0 0 1 TMEM79 chr1:156255774 5'GT 156255774 Upstream 18bp
467 chr3 183994288 183994288 1 + C G LUAD 183994290 + 183994270 183994310 41 TGGTGGAGTACAAACGGGCCACGCTTCGGGATGAAGACGCA TGGTGGAGTACAAACGGGGCACGCTTCGGGATGAAGACGCA < 41bp 0.910055019148493 0.69272765731088 NA NA prediction 0.434654723675226 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:183994290 chr3:183994288 nonsynonymous SNV 0.993 1 19 hm6Am_associated_SNPs_1113 0 0 0 0 1 ECE2 chr3:183994355 5'GT 183994355 Upstream 68bp
468 chr7 102553589 102553589 1 + T G UCEC 102553591 + 102553571 102553611 41 GGCATCCATTCCCCAAGTTCAGGTACTGTAAGCCTTTGTCT GGCATCCATTCCCCAAGTGCAGGTACTGTAAGCCTTTGTCT < 41bp 0.910461600791083 0.693268785989489 NA NA prediction 0.434385629603189 Functional Loss - FBXL13 ENSG00000161040 CDS Human protein_coding chr7:102553591 chr7:102553589 nonsynonymous SNV 0.999 2 19 hm6Am_associated_SNPs_1114 0 0 1 0 1 FBXL13 chr7:102553592 5'GT 102553592 Upstream 4bp
469 chr11 119001529 119001529 1 + C G LUSC 119001528 + 119001508 119001548 41 TGTCTACTTCCACTGCTACCACACCAAGCTGAAACAGTGGG TGTCTACTTCCACTGCTACCAGACCAAGCTGAAACAGTGGG < 41bp 0.716915460212602 0.464204812692924 NA NA prediction 0.433830920425203 Functional Loss - HINFP ENSG00000172273 CDS Human protein_coding chr11:119001528 chr11:119001529 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_1117 0 0 1 0 1 HINFP chr11:119001435 3'AG 119001435 Downstream 95bp
470 chr1 160390918 160390918 1 + C G BRCA 160390917 + 160390897 160390937 41 TCGGAGGCGGGACAACAGTCACAATGAGTACTACTATGAGG TCGGAGGCGGGACAACAGTCAGAATGAGTACTACTATGAGG < 41bp 0.716659633023999 0.443560845169425 NA NA prediction 0.433319266047998 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160390917 chr1:160390918 nonsynonymous SNV 0.999 5 22 hm6Am_associated_SNPs_1118 0 0 0 0 2 VANGL2 chr1:160390842 3'AG 160390842 Downstream 77bp
471 chr1 160390918 160390918 1 + C G BRCA 160390917 + 160390897 160390937 41 TCGGAGGCGGGACAACAGTCACAATGAGTACTACTATGAGG TCGGAGGCGGGACAACAGTCAGAATGAGTACTACTATGAGG < 41bp 0.716659633023999 0.443560845169425 NA NA prediction 0.433319266047998 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160390917 chr1:160390918 nonsynonymous SNV 0.999 5 22 hm6Am_associated_SNPs_1118 0 0 0 0 2 VANGL2 chr1:160390977 5'GT 160390977 Upstream 60bp
472 chr21 45563153 45563153 1 + C G LUAD 45563152 + 45563132 45563172 41 CGTCGAGGTGACTGTGGGCCACGAGCAGGAGGAAGGTGGCA CGTCGAGGTGACTGTGGGCCAGGAGCAGGAGGAAGGTGGCA < 41bp 0.716247998023202 0.446989110776532 NA NA prediction 0.432495996046403 Functional Loss - C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45563152 chr21:45563153 nonsynonymous SNV 0.963 1 22 hm6Am_associated_SNPs_1122 0 0 1 0 1 C21orf33 chr21:45563087 3'AG 45563087 Downstream 67bp
473 chr9 6413558 6413558 1 + C G DLBC 6413560 + 6413540 6413580 41 AGGACGTGTCTCGCAAAGCCACGATTGAGGAGCTGCGCGAG AGGACGTGTCTCGCAAAGGCACGATTGAGGAGCTGCGCGAG < 41bp 0.908812351834243 0.692874593070489 NA NA prediction 0.431875517527509 Functional Loss - UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6413560 chr9:6413558 nonsynonymous SNV 0.997 2 19 hm6Am_associated_SNPs_1123 0 0 1 0 1 UHRF2 chr9:6413643 5'GT 6413643 Upstream 86bp
474 chr21 48083456 48083456 1 + C G STAD 48083455 + 48083435 48083475 41 TCACTTCCAGACAAGACCCCACATCTCAAAAAGTAAGATAC TCACTTCCAGACAAGACCCCAGATCTCAAAAAGTAAGATAC < 41bp 0.758630661449062 0.543723517583504 NA NA prediction 0.429814287731116 Functional Loss - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48083455 chr21:48083456 nonsynonymous SNV 0.942 0 22 hm6Am_associated_SNPs_1130 0 0 1 0 1 PRMT2 chr21:48083466 5'GT 48083466 Upstream 11bp
475 chr3 9959033 9959033 1 + C G rs7643547 9959032 + 9959012 9959052 41 TGGTTCTTGCTGTCCTTGGCACTGGGCCGAAGCCCAGTGGT TGGTTCTTGCTGTCCTTGGCAGTGGGCCGAAGCCCAGTGGT < 41bp 0.725976368647608 0.51245827208598 NA NA prediction 0.427036193123254 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9959032 chr3:9959033 nonsynonymous SNV 0.996 4 22 hm6Am_associated_SNPs_1134 0 0 1 1 1 IL17RC chr3:9959104 5'GT 9959104 Upstream 72bp
476 chr1 14095627 14095627 1 + C G rs141331447 14095629 + 14095609 14095649 41 CTAGACCAAGCGGAGCAGCCAGCTGGCAGTAGCGCCCTGTA CTAGACCAAGCGGAGCAGGCAGCTGGCAGTAGCGCCCTGTA < 41bp 0.713131464678616 0.362274001085032 NA NA prediction 0.426262929357231 Functional Loss - PRDM2 ENSG00000116731;ENSG00000116731 UTR5;UTR3 Human other chr1:14095629 chr1:14095627 . . 0 19 hm6Am_associated_SNPs_1137 0 0 1 0 2 PRDM2 chr1:14095613 3'AG 14095613 Downstream 15bp
477 chr1 14095627 14095627 1 + C G rs141331447 14095629 + 14095609 14095649 41 CTAGACCAAGCGGAGCAGCCAGCTGGCAGTAGCGCCCTGTA CTAGACCAAGCGGAGCAGGCAGCTGGCAGTAGCGCCCTGTA < 41bp 0.713131464678616 0.362274001085032 NA NA prediction 0.426262929357231 Functional Loss - PRDM2 ENSG00000116731;ENSG00000116731 UTR5;UTR3 Human other chr1:14095629 chr1:14095627 . . 0 19 hm6Am_associated_SNPs_1137 0 0 1 0 2 PRDM2 chr1:14095668 5'GT 14095668 Upstream 42bp
478 chr16 88643729 88643729 1 + C G UCEC 88643728 + 88643708 88643748 41 CCAGGAGGAGGAAGATAATCACTCCGACGAGGAGGACCGGG CCAGGAGGAGGAAGATAATCAGTCCGACGAGGAGGACCGGG < 41bp 0.712057495155844 0.455579029453424 NA NA prediction 0.424114990311689 Functional Loss - ZC3H18 ENSG00000158545 CDS Human protein_coding chr16:88643728 chr16:88643729 nonsynonymous SNV 0.002 0 22 hm6Am_associated_SNPs_1145 0 0 1 0 1 ZC3H18 chr16:88643783 5'GT 88643783 Upstream 55bp
479 chr17 48539795 48539795 1 + C G KIRP 48539797 + 48539777 48539817 41 CCAGGCTCCCAGATCTGACCACAGTCATCTCGGTGGATGCC CCAGGCTCCCAGATCTGAGCACAGTCATCTCGGTGGATGCC < 41bp 0.711669158601001 0.341171675876675 NA NA prediction 0.423338317202002 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48539797 chr17:48539795 nonsynonymous SNV 0.868 0 19 hm6Am_associated_SNPs_1152 0 0 1 0 1 ACSF2 chr17:48539781 3'AG 48539781 Downstream 15bp
480 chr3 112969424 112969424 1 + C G CESC 112969426 + 112969406 112969446 41 GGTCCCTCAGGTCACCGTCCAGCCTGCGTCCACCGTCCAGA GGTCCCTCAGGTCACCGTGCAGCCTGCGTCCACCGTCCAGA < 41bp 0.711602780681058 0.354493033615241 NA NA prediction 0.423205561362116 Functional Loss - BOC ENSG00000144857 CDS Human protein_coding chr3:112969426 chr3:112969424 synonymous SNV . 0 19 hm6Am_associated_SNPs_1153 0 0 0 0 1 BOC chr3:112969402 3'AG 112969402 Downstream 23bp
481 chr7 75894739 75894739 1 + C G rs10252497 75894738 + 75894718 75894758 41 CCATAGCAGTGGCAGCTCCCACAGCCCCTCCCTCTCCTCCC CCATAGCAGTGGCAGCTCCCAGAGCCCCTCCCTCTCCTCCC < 41bp 0.82251634390738 0.61142676929006 NA NA prediction 0.42217914923464 Functional Loss - SRRM3 ENSG00000177679 CDS Human protein_coding chr7:75894738 chr7:75894739 nonsynonymous SNV 0.996 0 22 hm6Am_associated_SNPs_1157 0 0 0 0 1 SRRM3 chr7:75894786 5'GT 75894786 Upstream 48bp
482 chr19 53056424 53056424 1 + C G LUAD 53056426 + 53056406 53056446 41 AGGCAATAGAGAAGTGATCCACACAGGGACATTGCAAAGAC AGGCAATAGAGAAGTGATGCACACAGGGACATTGCAAAGAC < 41bp 0.71077357172085 0.365001649057572 NA NA prediction 0.4215471434417 Functional Loss - ZNF808 ENSG00000198482 CDS Human protein_coding chr19:53056426 chr19:53056424 nonsynonymous SNV 0.000 1 19 hm6Am_associated_SNPs_1160 0 0 0 0 1 ZNF808 chr19:53056360 3'AG 53056360 Downstream 65bp
483 chr1 156843468 156843468 1 + C G BRCA 156843467 + 156843447 156843487 41 CACGGCGGTGGAGATGCACCACTGGTGCATCCCCTTCTCTG CACGGCGGTGGAGATGCACCAGTGGTGCATCCCCTTCTCTG < 41bp 0.80460444753767 0.594213364456803 NA NA prediction 0.420782166161735 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156843467 chr1:156843468 nonsynonymous SNV 0.994 1 22 hm6Am_associated_SNPs_1165 0 0 0 0 1 NTRK1 chr1:156843425 3'AG 156843425 Downstream 44bp
484 chr7 55221755 55221755 1 + C G GBM 55221754 + 55221734 55221774 41 TGCAAGGACACCTGCCCCCCACTCATGCTCTACAACCCCAC TGCAAGGACACCTGCCCCCCAGTCATGCTCTACAACCCCAC < 41bp 0.798572784874292 0.588550179445264 NA NA prediction 0.420045210858057 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55221754 chr7:55221755 nonsynonymous SNV 0.880 1 22 hm6Am_associated_SNPs_1167 0 0 1 0 2 EGFR chr7:55221704 3'AG 55221704 Downstream 52bp
485 chr7 55221755 55221755 1 + C G GBM 55221754 + 55221734 55221774 41 TGCAAGGACACCTGCCCCCCACTCATGCTCTACAACCCCAC TGCAAGGACACCTGCCCCCCAGTCATGCTCTACAACCCCAC < 41bp 0.798572784874292 0.588550179445264 NA NA prediction 0.420045210858057 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55221754 chr7:55221755 nonsynonymous SNV 0.880 1 22 hm6Am_associated_SNPs_1167 0 0 1 0 2 EGFR chr7:55221845 5'GT 55221845 Upstream 91bp
486 chrX 85950100 85950100 1 + T G STAD 85950102 + 85950082 85950122 41 ACCCCAACATGGAATTGCTCATGCAGCCCTAGCTGGCCAGC ACCCCAACATGGAATTGCGCATGCAGCCCTAGCTGGCCAGC < 41bp 0.709739529482151 0.335957817893554 NA NA prediction 0.419479058964301 Functional Loss - DACH2 ENSG00000126733 CDS Human protein_coding chrX:85950102 chrX:85950100 synonymous SNV . 0 19 hm6Am_associated_SNPs_1174 0 0 0 0 2 DACH2 chrX:85950024 3'AG 85950024 Downstream 77bp
487 chrX 85950100 85950100 1 + T G STAD 85950102 + 85950082 85950122 41 ACCCCAACATGGAATTGCTCATGCAGCCCTAGCTGGCCAGC ACCCCAACATGGAATTGCGCATGCAGCCCTAGCTGGCCAGC < 41bp 0.709739529482151 0.335957817893554 NA NA prediction 0.419479058964301 Functional Loss - DACH2 ENSG00000126733 CDS Human protein_coding chrX:85950102 chrX:85950100 synonymous SNV . 0 19 hm6Am_associated_SNPs_1174 0 0 0 0 2 DACH2 chrX:85950182 5'GT 85950182 Upstream 83bp
488 chr1 200867446 200867446 1 + C G UCEC 200867448 + 200867428 200867468 41 TTTAAAGCTGGGGAAGCTCCAGGCTACCTACACAACCTGGC TTTAAAGCTGGGGAAGCTGCAGGCTACCTACACAACCTGGC < 41bp 0.842228298877027 0.632576839160739 NA NA prediction 0.419302919432575 Functional Loss - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200867448 chr1:200867446 nonsynonymous SNV 0.991 0 19 hm6Am_associated_SNPs_1175 0 0 1 0 1 C1orf106 chr1:200867435 3'AG 200867435 Downstream 12bp
489 chr10 103587660 103587660 1 + C G BLCA 103587662 + 103587642 103587682 41 GTACCTGGAAGAAGCTCTCCACGTGTTCCCTTGGGGCCTCC GTACCTGGAAGAAGCTCTGCACGTGTTCCCTTGGGGCCTCC < 41bp 0.709209601130752 0.341786080266499 NA NA prediction 0.418419202261505 Functional Loss - KCNIP2 ENSG00000120049 CDS Human antisense chr10:103587662 chr10:103587660 nonsynonymous SNV 0.998 3 19 hm6Am_associated_SNPs_1179 0 0 0 0 1 KCNIP2-AS1 chr10:103587617 3'AG 103587617 Downstream 44bp
490 chr16 89598329 89598329 1 + C G BLCA 89598331 + 89598311 89598351 41 GAGCCCAGAACGCTTCCTCCAGCTTGGCGCCAAGGTCCCAA GAGCCCAGAACGCTTCCTGCAGCTTGGCGCCAAGGTCCCAA < 41bp 0.708949007979214 0.337726484442068 NA NA prediction 0.417898015958427 Functional Loss - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89598331 chr16:89598329 synonymous SNV . 0 19 hm6Am_associated_SNPs_1183 0 0 1 0 1 SPG7 chr16:89598312 3'AG 89598312 Downstream 18bp
491 chr12 44165128 44165128 1 + C G ESCA 44165130 + 44165110 44165150 41 TCTTGTGGATCTTTTGATCCAAAATGAATTTTTTGCTCCTG TCTTGTGGATCTTTTGATGCAAAATGAATTTTTTGCTCCTG < 41bp 0.708561184149325 0.450012919715375 NA NA prediction 0.41712236829865 Functional Loss - IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44165130 chr12:44165128 nonsynonymous SNV 0.967 0 19 hm6Am_associated_SNPs_1187 0 0 0 0 1 IRAK4 chr12:44165168 5'GT 44165168 Upstream 41bp
492 chr12 8368446 8368446 1 + T G rs141737319 8368448 + 8368428 8368468 41 TGCTTTCAGCCATTAAGTTCAAAAGTACTGCCACAAGGGCC TGCTTTCAGCCATTAAGTGCAAAAGTACTGCCACAAGGGCC < 41bp 0.708439109048338 0.321084071790869 NA NA prediction 0.416878218096675 Functional Loss - FAM66C;FAM90A1 ENSG00000226711 ncRNA_exonic Human antisense chr12:8368448 chr12:8368446 . . 0 19 hm6Am_associated_SNPs_1188 0 0 0 0 1 FAM66C;FAM90A1 chr12:8368402 3'AG 8368402 Downstream 45bp
493 chr11 67789219 67789219 1 + C G SKCM 67789221 + 67789201 67789241 41 TTTCTATGGCGACGACCCCCAGAGCTCCCCAAACCTGGGCC TTTCTATGGCGACGACCCGCAGAGCTCCCCAAACCTGGGCC < 41bp 0.708345842964893 0.351571447600568 NA NA prediction 0.416691685929786 Functional Loss - ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67789221 chr11:67789219 synonymous SNV . 0 19 hm6Am_associated_SNPs_1189 0 0 0 0 1 ALDH3B1;ALDH3B1 chr11:67789294 5'GT 67789294 Upstream 76bp
494 chr19 39966764 39966764 1 + T G SKCM 39966766 + 39966746 39966786 41 AGGACAGTGAGAAGGTTGTCAGCATTTCCAGTGAGCACCTG AGGACAGTGAGAAGGTTGGCAGCATTTCCAGTGAGCACCTG < 41bp 0.708313212202623 0.289832923070889 NA NA prediction 0.416626424405246 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39966766 chr19:39966764 nonsynonymous SNV 0.959 3 19 hm6Am_associated_SNPs_1192 0 0 1 0 2 SUPT5H chr19:39966721 3'AG 39966721 Downstream 44bp
495 chr19 39966764 39966764 1 + T G SKCM 39966766 + 39966746 39966786 41 AGGACAGTGAGAAGGTTGTCAGCATTTCCAGTGAGCACCTG AGGACAGTGAGAAGGTTGGCAGCATTTCCAGTGAGCACCTG < 41bp 0.708313212202623 0.289832923070889 NA NA prediction 0.416626424405246 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39966766 chr19:39966764 nonsynonymous SNV 0.959 3 19 hm6Am_associated_SNPs_1192 0 0 1 0 2 SUPT5H chr19:39966816 5'GT 39966816 Upstream 53bp
496 chr11 118986832 118986832 1 + C G LUSC 118986831 + 118986811 118986851 41 GAAGCTGGCCTGAGCCAATCACACGATGACCTCTCCAACGC GAAGCTGGCCTGAGCCAATCAGACGATGACCTCTCCAACGC < 41bp 0.832601271333002 0.624484066682852 NA NA prediction 0.4162344093003 Functional Loss - C2CD2L ENSG00000172375 CDS Human protein_coding chr11:118986831 chr11:118986832 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_1194 0 0 1 0 1 C2CD2L chr11:118986755 3'AG 118986755 Downstream 78bp
497 chr19 44103069 44103069 1 + C G BLCA 44103071 + 44103051 44103091 41 CACATGAAGCGGGAGCACCCAGCGGACTTCGTGGCCCAGAA CACATGAAGCGGGAGCACGCAGCGGACTTCGTGGCCCAGAA < 41bp 0.915074646679753 0.707055142149747 NA NA prediction 0.416039009060011 Functional Loss - ZNF576 ENSG00000124444 CDS Human protein_coding chr19:44103071 chr19:44103069 nonsynonymous SNV 0.974 2 19 hm6Am_associated_SNPs_1196 0 0 1 0 1 ZNF576 chr19:44102983 3'AG 44102983 Downstream 87bp
498 chr14 23006617 23006617 1 + T G SKCM 23006619 + 23006599 23006639 41 AGGGGAACCAAGTGGTGGTCATACCAAGTAAGTGAGCTGGG AGGGGAACCAAGTGGTGGGCATACCAAGTAAGTGAGCTGGG < 41bp 0.707865335347638 0.30989125289934 NA NA prediction 0.415730670695275 Functional Loss - OR4E1;LINC02332 ENSG00000211882 CDS Human TR_J_gene chr14:23006619 chr14:23006617 unknown . 0 19 hm6Am_associated_SNPs_1198 0 0 0 0 1 OR4E1;LINC02332 chr14:23006625 5'GT 23006625 Upstream 9bp
499 chr21 47361653 47361653 1 + C G rs77913438 47361652 + 47361632 47361672 41 ACCCTTCCCCCGCGTCACCCACCTGCCAGAGCCTAAGGCCC ACCCTTCCCCCGCGTCACCCAGCTGCCAGAGCCTAAGGCCC < 41bp 0.788823393686148 0.580969239146299 NA NA prediction 0.415708309079698 Functional Loss - PCBP3 ENSG00000183570 UTR3 Human protein_coding chr21:47361652 chr21:47361653 . . 0 22 hm6Am_associated_SNPs_1199 0 0 0 0 1 PCBP3 chr21:47361584 3'AG 47361584 Downstream 70bp
500 chrX 64808779 64808779 1 + T G rs59310322 64808777 + 64808757 64808797 41 TATTCCCAGGCAAGGGACTCATTAAGCCCAAAGCAATTTTA TATTCCCAGGCAAGGGACTCATGAAGCCCAAAGCAATTTTA < 41bp 0.740631328642765 0.532925054104849 NA NA prediction 0.415412549075831 Functional Loss - FRMD8P1;MSN ENSG00000147065 intronic Human protein_coding chrX:64808777 chrX:64808779 . . 0 23 hm6Am_associated_SNPs_1200 0 0 0 0 1 FRMD8P1;MSN chrX:64808766 3'AG 64808766 Downstream 14bp
501 chr15 28900534 28900534 1 + C G rs534887861 28900533 + 28900513 28900553 41 ACTTCTTGGGGAGCTTGCTCACTATGTGCTCCTCTGACGTG ACTTCTTGGGGAGCTTGCTCAGTATGTGCTCCTCTGACGTG < 41bp 0.811016319770974 0.603312055713087 NA NA prediction 0.415408528115775 Functional Loss - HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28900533 chr15:28900534 . . 0 22 hm6Am_associated_SNPs_1201 0 0 1 0 1 HERC2P9 chr15:28900566 5'GT 28900566 Upstream 33bp
502 chr19 45567648 45567648 1 + C G rs140157080 45567650 + 45567630 45567670 41 CTTCTGCCTCGAGGACCTCCAGCTCCCGCTCCAGCTCTCGC CTTCTGCCTCGAGGACCTGCAGCTCCCGCTCCAGCTCTCGC < 41bp 0.707182690408824 0.352220429000429 NA NA prediction 0.414365380817648 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45567650 chr19:45567648 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_1208 0 0 1 0 1 CLASRP chr19:45567601 3'AG 45567601 Downstream 48bp
503 chr1 150480696 150480696 1 + C G HNSC 150480695 + 150480675 150480715 41 GTTGCCCCAGGATGGGGACCACAGCCAGAGCAGCCTTGGTC GTTGCCCCAGGATGGGGACCAGAGCCAGAGCAGCCTTGGTC < 41bp 0.813758810065493 0.607007479101852 NA NA prediction 0.413502661927282 Functional Loss - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150480695 chr1:150480696 nonsynonymous SNV 0.128 1 22 hm6Am_associated_SNPs_1213 0 0 1 0 1 ECM1 chr1:150480755 5'GT 150480755 Upstream 60bp
504 chrX 70346299 70346299 1 + C G LGG 70346298 + 70346278 70346318 41 TTCGACCTCATGGAATATTCACTCAGCATCAGTGGCCTCAT TTCGACCTCATGGAATATTCAGTCAGCATCAGTGGCCTCAT < 41bp 0.706349089289239 0.461841936227113 NA NA prediction 0.412698178578477 Functional Loss - MED12 ENSG00000184634 CDS Human protein_coding chrX:70346298 chrX:70346299 nonsynonymous SNV 1.000 5 22 hm6Am_associated_SNPs_1219 0 0 1 0 1 MED12 chrX:70346334 5'GT 70346334 Upstream 36bp
505 chr19 36277879 36277879 1 + T G STAD 36277881 + 36277861 36277901 41 GGAGCCTGCGCCCCCATCTCATACCCCTGCTGCTGCGAGGA GGAGCCTGCGCCCCCATCGCATACCCCTGCTGCTGCGAGGA < 41bp 0.706319042941939 0.294750824535524 NA NA prediction 0.412638085883878 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36277881 chr19:36277879 nonsynonymous SNV 0.943 2 19 hm6Am_associated_SNPs_1220 0 0 1 0 1 ARHGAP33 chr19:36277798 3'AG 36277798 Downstream 82bp
506 chr1 17701986 17701986 1 + C G BRCA 17701985 + 17701965 17702005 41 GCACAGCTGTGCTGTACCTCACTGGCATTGGTGAGTGTTGC GCACAGCTGTGCTGTACCTCAGTGGCATTGGTGAGTGTTGC < 41bp 0.70749202586742 0.50160499601687 NA NA prediction 0.411774059701099 Functional Loss - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17701985 chr1:17701986 . 0.927 2 22 hm6Am_associated_SNPs_1225 0 0 0 0 2 PADI6 chr1:17701922 3'AG 17701922 Downstream 65bp
507 chr1 17701986 17701986 1 + C G BRCA 17701985 + 17701965 17702005 41 GCACAGCTGTGCTGTACCTCACTGGCATTGGTGAGTGTTGC GCACAGCTGTGCTGTACCTCAGTGGCATTGGTGAGTGTTGC < 41bp 0.70749202586742 0.50160499601687 NA NA prediction 0.411774059701099 Functional Loss - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17701985 chr1:17701986 . 0.927 2 22 hm6Am_associated_SNPs_1225 0 0 0 0 2 PADI6 chr1:17701994 5'GT 17701994 Upstream 9bp
508 chr9 117350117 117350117 1 + C G rs530588639 117350119 + 117350099 117350139 41 CTCTCAGAATCGCTGCCGCCATGGCTAGTCAGTCTCAGGGG CTCTCAGAATCGCTGCCGGCATGGCTAGTCAGTCTCAGGGG < 41bp 0.919297639207822 0.714283679934867 NA NA prediction 0.410027918545911 Functional Loss - ATP6V1G1 ENSG00000136888 UTR5 Human protein_coding chr9:117350119 chr9:117350117 . . 0 19 hm6Am_associated_SNPs_1234 0 0 1 0 1 ATP6V1G1 chr9:117350200 5'GT 117350200 Upstream 84bp
509 chr12 98987870 98987870 1 + C G UCS 98987872 + 98987852 98987892 41 CTCCCCAGGGCCCACGGGCCAGCCCCGCCGCCCTCGCAACC CTCCCCAGGGCCCACGGGGCAGCCCCGCCGCCCTCGCAACC < 41bp 0.918394262990062 0.713386399386859 NA NA prediction 0.410015727206406 Functional Loss - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98987872 chr12:98987870 synonymous SNV . 0 19 hm6Am_associated_SNPs_1235 0 0 1 0 1 SLC25A3 chr12:98987913 5'GT 98987913 Upstream 44bp
510 chr1 16351266 16351266 1 + T G rs142945201 16351264 + 16351244 16351284 41 GCGGCTGTCCCCAGCACACCAGTGGCTGTACAGGGAGATTG GCGGCTGTCCCCAGCACACCAGGGGCTGTACAGGGAGATTG < 41bp 0.763878421969188 0.558886001793602 NA NA prediction 0.409984840351172 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16351264 chr1:16351266 nonsynonymous SNV 0.912 3 23 hm6Am_associated_SNPs_1236 0 0 0 0 1 CLCNKA chr1:16351258 3'AG 16351258 Downstream 9bp
511 chr1 236850036 236850036 1 + C G BLCA 236850038 + 236850018 236850058 41 CGAGGATGAGTACATGATCCAGGAGGAGGAGTGGGACCGCG CGAGGATGAGTACATGATGCAGGAGGAGGAGTGGGACCGCG < 41bp 0.917415460811911 0.712732806905582 NA NA prediction 0.409365307812658 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236850038 chr1:236850036 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_1239 0 0 1 0 1 ACTN2 chr1:236850099 5'GT 236850099 Upstream 64bp
512 chr7 142563300 142563300 1 + C G rs8177174 142563299 + 142563279 142563319 41 ACCATGCCCTGCCCGCAGTCACGCTCCCAACCCAGCAGCCC ACCATGCCCTGCCCGCAGTCAGGCTCCCAACCCAGCAGCCC < 41bp 0.825655839503536 0.621022470659465 NA NA prediction 0.409266737688142 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142563299 chr7:142563300 nonsynonymous SNV 0.026 1 22 hm6Am_associated_SNPs_1240 0 0 0 0 2 EPHB6 chr7:142563230 3'AG 142563230 Downstream 71bp
513 chr7 142563300 142563300 1 + C G rs8177174 142563299 + 142563279 142563319 41 ACCATGCCCTGCCCGCAGTCACGCTCCCAACCCAGCAGCCC ACCATGCCCTGCCCGCAGTCAGGCTCCCAACCCAGCAGCCC < 41bp 0.825655839503536 0.621022470659465 NA NA prediction 0.409266737688142 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142563299 chr7:142563300 nonsynonymous SNV 0.026 1 22 hm6Am_associated_SNPs_1240 0 0 0 0 2 EPHB6 chr7:142563385 5'GT 142563385 Upstream 86bp
514 chr9 137293529 137293529 1 + C G BLCA 137293531 + 137293511 137293551 41 CCCCGACGGGGCGAGGCTCCATGGCTGCCCCCTCGCTGCAC CCCCGACGGGGCGAGGCTGCATGGCTGCCCCCTCGCTGCAC < 41bp 0.910118129366636 0.705533836352127 NA NA prediction 0.409168586029019 Functional Loss - RXRA ENSG00000186350 CDS Human protein_coding chr9:137293531 chr9:137293529 nonsynonymous SNV 0.993 1 19 hm6Am_associated_SNPs_1241 0 0 1 0 1 RXRA chr9:137293478 3'AG 137293478 Downstream 52bp
515 chrX 48371045 48371045 1 + T G CESC 48371043 + 48371023 48371063 41 TGCTGTGCCTTGTGCTGTCCACTTGCGTGGGCCCCTACCTC TGCTGTGCCTTGTGCTGTCCACGTGCGTGGGCCCCTACCTC < 41bp 0.730383032794168 0.525854694376406 NA NA prediction 0.409056676835523 Functional Loss - PORCN ENSG00000102312 CDS Human protein_coding chrX:48371043 chrX:48371045 synonymous SNV . 0 23 hm6Am_associated_SNPs_1242 0 0 1 0 2 PORCN chrX:48370977 3'AG 48370977 Downstream 69bp
516 chrX 48371045 48371045 1 + T G CESC 48371043 + 48371023 48371063 41 TGCTGTGCCTTGTGCTGTCCACTTGCGTGGGCCCCTACCTC TGCTGTGCCTTGTGCTGTCCACGTGCGTGGGCCCCTACCTC < 41bp 0.730383032794168 0.525854694376406 NA NA prediction 0.409056676835523 Functional Loss - PORCN ENSG00000102312 CDS Human protein_coding chrX:48371043 chrX:48371045 synonymous SNV . 0 23 hm6Am_associated_SNPs_1242 0 0 1 0 2 PORCN chrX:48371107 5'GT 48371107 Upstream 63bp
517 chr17 76230693 76230693 1 + T G rs79885699 76230691 + 76230671 76230711 41 CAGTGCTGCACCGTGCAGTCATTGTGGTCCTGCCCCTGAGC CAGTGCTGCACCGTGCAGTCATGGTGGTCCTGCCCCTGAGC < 41bp 0.720713066447787 0.516362845790563 NA NA prediction 0.408700441314449 Functional Loss - TMEM235 ENSG00000204278 CDS Human protein_coding chr17:76230691 chr17:76230693 nonsynonymous SNV 0.960 0 23 hm6Am_associated_SNPs_1245 0 0 0 0 1 TMEM235 chr17:76230674 3'AG 76230674 Downstream 20bp
518 chr16 2964225 2964225 1 + C G rs75920522 2964227 + 2964207 2964247 41 TGCCCCCGGGGCTCCTGCCCAGCAAGCCAGCGCCGTGACCC TGCCCCCGGGGCTCCTGCGCAGCAAGCCAGCGCCGTGACCC < 41bp 0.886233565075686 0.682032205273412 NA NA prediction 0.408402719604548 Functional Loss - FLYWCH1 ENSG00000059122 UTR5 Human protein_coding chr16:2964227 chr16:2964225 . . 0 19 hm6Am_associated_SNPs_1248 0 0 1 0 2 FLYWCH1 chr16:2964177 3'AG 2964177 Downstream 49bp
519 chr16 2964225 2964225 1 + C G rs75920522 2964227 + 2964207 2964247 41 TGCCCCCGGGGCTCCTGCCCAGCAAGCCAGCGCCGTGACCC TGCCCCCGGGGCTCCTGCGCAGCAAGCCAGCGCCGTGACCC < 41bp 0.886233565075686 0.682032205273412 NA NA prediction 0.408402719604548 Functional Loss - FLYWCH1 ENSG00000059122 UTR5 Human protein_coding chr16:2964227 chr16:2964225 . . 0 19 hm6Am_associated_SNPs_1248 0 0 1 0 2 FLYWCH1 chr16:2964290 5'GT 2964290 Upstream 66bp
520 chr4 654278 654278 1 + C G KIRC 654280 + 654260 654300 41 AGGAGCTGCCAGGGCCCACCACATTTGACATCTACGAATTC AGGAGCTGCCAGGGCCCAGCACATTTGACATCTACGAATTC < 41bp 0.703878526795258 0.338885489159937 NA NA prediction 0.407757053590515 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:654280 chr4:654278 nonsynonymous SNV 0.082 0 19 hm6Am_associated_SNPs_1250 0 0 0 0 1 PDE6B chr4:654256 3'AG 654256 Downstream 23bp
521 chr16 839646 839646 1 + C G rs78038349 839645 + 839625 839665 41 CATCTTGGAGGACTACGTCCACGTGACATCCACGGAGGGCG CATCTTGGAGGACTACGTCCAGGTGACATCCACGGAGGGCG < 41bp 0.802147538926893 0.598666706908158 NA NA prediction 0.40696166403747 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:839645 chr16:839646 nonsynonymous SNV 0.013 0 22 hm6Am_associated_SNPs_1255 0 0 1 0 2 CHTF18 chr16:839616 3'AG 839616 Downstream 31bp
522 chr16 839646 839646 1 + C G rs78038349 839645 + 839625 839665 41 CATCTTGGAGGACTACGTCCACGTGACATCCACGGAGGGCG CATCTTGGAGGACTACGTCCAGGTGACATCCACGGAGGGCG < 41bp 0.802147538926893 0.598666706908158 NA NA prediction 0.40696166403747 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:839645 chr16:839646 nonsynonymous SNV 0.013 0 22 hm6Am_associated_SNPs_1255 0 0 1 0 2 CHTF18 chr16:839715 5'GT 839715 Upstream 70bp
523 chr8 144124593 144124593 1 + A G LIHC 144124591 + 144124571 144124611 41 GCTGAGCAGGAGCTGTACGCACAGGGCCCAGGGGCTGCTGG GCTGAGCAGGAGCTGTACGCACGGGGCCCAGGGGCTGCTGG < 41bp 0.716022479242082 0.512728680838448 NA NA prediction 0.406587596807268 Functional Loss - C8orf31 ENSG00000177335;ENSG00000177335 exonic;splicing Human processed_transcript chr8:144124591 chr8:144124593 nonsynonymous SNV . 0 23 hm6Am_associated_SNPs_1257 0 0 0 0 3 C8orf31 chr8:144124504 3'AG 144124504 Downstream 90bp
524 chr8 144124593 144124593 1 + A G LIHC 144124591 + 144124571 144124611 41 GCTGAGCAGGAGCTGTACGCACAGGGCCCAGGGGCTGCTGG GCTGAGCAGGAGCTGTACGCACGGGGCCCAGGGGCTGCTGG < 41bp 0.716022479242082 0.512728680838448 NA NA prediction 0.406587596807268 Functional Loss - C8orf31 ENSG00000177335;ENSG00000177335 exonic;splicing Human processed_transcript chr8:144124591 chr8:144124593 nonsynonymous SNV . 0 23 hm6Am_associated_SNPs_1257 0 0 0 0 3 C8orf31 chr8:144124580 3'AG 144124580 Downstream 14bp
525 chr8 144124593 144124593 1 + A G LIHC 144124591 + 144124571 144124611 41 GCTGAGCAGGAGCTGTACGCACAGGGCCCAGGGGCTGCTGG GCTGAGCAGGAGCTGTACGCACGGGGCCCAGGGGCTGCTGG < 41bp 0.716022479242082 0.512728680838448 NA NA prediction 0.406587596807268 Functional Loss - C8orf31 ENSG00000177335;ENSG00000177335 exonic;splicing Human processed_transcript chr8:144124591 chr8:144124593 nonsynonymous SNV . 0 23 hm6Am_associated_SNPs_1257 0 0 0 0 3 C8orf31 chr8:144124679 5'GT 144124679 Upstream 87bp
526 chr9 35754040 35754040 1 - G C BLCA 35754038 - 35754018 35754058 41 GGTGATGTCTCTACTCCTCCAGCACCCAGGAGTCTACAGCA GGTGATGTCTCTACTCCTGCAGCACCCAGGAGTCTACAGCA < 41bp 0.703286447678355 0.347586390638366 NA NA prediction 0.40657289535671 Functional Loss - MSMP ENSG00000215183 CDS Human protein_coding chr9:35754038 chr9:35754040 synonymous SNV . 0 19 hm6Am_associated_SNPs_1258 0 0 0 0 1 MSMP chr9:35753997 5'GT 35753997 Upstream 44bp
527 chr15 85461769 85461769 1 + T G LGG 85461767 + 85461747 85461787 41 CCCGGCAGGTTCTGCCCATCATTGTCTTTTTCAGCTGTGTC CCCGGCAGGTTCTGCCCATCATGGTCTTTTTCAGCTGTGTC < 41bp 0.746150864431609 0.543195580307664 NA NA prediction 0.40591056824789 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85461767 chr15:85461769 nonsynonymous SNV 0.758 3 23 hm6Am_associated_SNPs_1261 0 0 0 0 2 SLC28A1 chr15:85461755 3'AG 85461755 Downstream 15bp
528 chr15 85461769 85461769 1 + T G LGG 85461767 + 85461747 85461787 41 CCCGGCAGGTTCTGCCCATCATTGTCTTTTTCAGCTGTGTC CCCGGCAGGTTCTGCCCATCATGGTCTTTTTCAGCTGTGTC < 41bp 0.746150864431609 0.543195580307664 NA NA prediction 0.40591056824789 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85461767 chr15:85461769 nonsynonymous SNV 0.758 3 23 hm6Am_associated_SNPs_1261 0 0 0 0 2 SLC28A1 chr15:85461835 5'GT 85461835 Upstream 67bp
529 chr11 62546361 62546361 1 + C G UCEC 62546360 + 62546340 62546380 41 GTGCCCAGTGCTGTGTCTTCACTGACAGATGACCTTCTCAA GTGCCCAGTGCTGTGTCTTCAGTGACAGATGACCTTCTCAA < 41bp 0.837875099873689 0.635119384462831 NA NA prediction 0.405511430821717 Functional Loss - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62546360 chr11:62546361 nonsynonymous SNV 0.981 2 22 hm6Am_associated_SNPs_1265 0 0 0 0 2 TAF6L chr11:62546341 3'AG 62546341 Downstream 21bp
530 chr11 62546361 62546361 1 + C G UCEC 62546360 + 62546340 62546380 41 GTGCCCAGTGCTGTGTCTTCACTGACAGATGACCTTCTCAA GTGCCCAGTGCTGTGTCTTCAGTGACAGATGACCTTCTCAA < 41bp 0.837875099873689 0.635119384462831 NA NA prediction 0.405511430821717 Functional Loss - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62546360 chr11:62546361 nonsynonymous SNV 0.981 2 22 hm6Am_associated_SNPs_1265 0 0 0 0 2 TAF6L chr11:62546435 5'GT 62546435 Upstream 75bp
531 chr12 56330865 56330865 1 + C G rs7966319 56330867 + 56330847 56330887 41 CGAGATGGCTAAATATGTCCAAGGAGATGTGAGTGGCAGCT CGAGATGGCTAAATATGTGCAAGGAGATGTGAGTGGCAGCT < 41bp 0.70275000838714 0.433464159101404 NA NA prediction 0.405500016774279 Functional Loss - DGKA ENSG00000065357 CDS Human protein_coding chr12:56330867 chr12:56330865 synonymous SNV . 0 19 hm6Am_associated_SNPs_1266 0 0 0 0 2 DGKA chr12:56330801 3'AG 56330801 Downstream 65bp
532 chr12 56330865 56330865 1 + C G rs7966319 56330867 + 56330847 56330887 41 CGAGATGGCTAAATATGTCCAAGGAGATGTGAGTGGCAGCT CGAGATGGCTAAATATGTGCAAGGAGATGTGAGTGGCAGCT < 41bp 0.70275000838714 0.433464159101404 NA NA prediction 0.405500016774279 Functional Loss - DGKA ENSG00000065357 CDS Human protein_coding chr12:56330867 chr12:56330865 synonymous SNV . 0 19 hm6Am_associated_SNPs_1266 0 0 0 0 2 DGKA chr12:56330874 5'GT 56330874 Upstream 10bp
533 chr10 43606838 43606838 1 + T G HNSC 43606836 + 43606816 43606856 41 GCCCAAGTGTGCCGAACTTCACTACATGGTGGTGGCCACCG GCCCAAGTGTGCCGAACTTCACGACATGGTGGTGGCCACCG < 41bp 0.718752428246577 0.516097032863283 NA NA prediction 0.405310790766588 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43606836 chr10:43606838 nonsynonymous SNV 0.040 2 23 hm6Am_associated_SNPs_1267 0 0 0 0 1 RET chr10:43606913 5'GT 43606913 Upstream 76bp
534 chr12 124220107 124220107 1 + A G LIHC 124220105 + 124220085 124220125 41 TGCCACGTGTACCCCTATCCAAACACAGCCGAGGAGCGGAG TGCCACGTGTACCCCTATCCAAGCACAGCCGAGGAGCGGAG < 41bp 0.702572945786764 0.499437364024213 NA NA prediction 0.405145891573528 Functional Loss - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124220105 chr12:124220107 nonsynonymous SNV 0.716 1 23 hm6Am_associated_SNPs_1269 0 0 1 0 2 ATP6V0A2 chr12:124220078 3'AG 124220078 Downstream 30bp
535 chr12 124220107 124220107 1 + A G LIHC 124220105 + 124220085 124220125 41 TGCCACGTGTACCCCTATCCAAACACAGCCGAGGAGCGGAG TGCCACGTGTACCCCTATCCAAGCACAGCCGAGGAGCGGAG < 41bp 0.702572945786764 0.499437364024213 NA NA prediction 0.405145891573528 Functional Loss - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124220105 chr12:124220107 nonsynonymous SNV 0.716 1 23 hm6Am_associated_SNPs_1269 0 0 1 0 2 ATP6V0A2 chr12:124220171 5'GT 124220171 Upstream 65bp
536 chr1 75622622 75622622 1 + T G CESC 75622620 + 75622600 75622640 41 CACGCCACAAGAAACACGTCAGTCCTAATCACTCATCCTCC CACGCCACAAGAAACACGTCAGGCCTAATCACTCATCCTCC < 41bp 0.702408638754081 0.492568023030803 NA NA prediction 0.404817277508162 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75622620 chr1:75622622 nonsynonymous SNV 1.000 2 23 hm6Am_associated_SNPs_1270 0 0 0 0 1 LHX8 chr1:75622578 3'AG 75622578 Downstream 45bp
537 chr20 56140476 56140476 1 + C G LUSC 56140478 + 56140458 56140498 41 CTTCGGCAAATACCTGGCCCACTGGCTTAGCATGGCCCAGC CTTCGGCAAATACCTGGCGCACTGGCTTAGCATGGCCCAGC < 41bp 0.701494157837033 0.34196944975 NA NA prediction 0.402988315674067 Functional Loss - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56140478 chr20:56140476 synonymous SNV . 0 19 hm6Am_associated_SNPs_1281 0 0 1 0 1 PCK1 chr20:56140406 3'AG 56140406 Downstream 71bp
538 chr7 64343118 64343118 1 + C G rs13225933 64343120 + 64343100 64343140 41 CGCGAAATCCCTAAGAATCCAAAAGGATCCGCAGGAGGCGT CGCGAAATCCCTAAGAATGCAAAAGGATCCGCAGGAGGCGT < 41bp 0.908643473097867 0.707149833950224 NA NA prediction 0.402987278295285 Functional Loss - ZNF138;ZNF273 ENSG00000213640;ENSG00000189316 intergenic Human other chr7:64343120 chr7:64343118 . . 0 19 hm6Am_associated_SNPs_1282 0 0 0 0 1 ZNF138;ZNF273 chr7:64343163 5'GT 64343163 Upstream 46bp
539 chr1 33764593 33764593 1 + C G COAD 33764592 + 33764572 33764612 41 GGAGCACCTGGTGAGCCATCACTCGCCCCAGAGGACGGAGT GGAGCACCTGGTGAGCCATCAGTCGCCCCAGAGGACGGAGT < 41bp 0.701202878468419 0.432186902620854 NA NA prediction 0.402405756936838 Functional Loss - ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33764592 chr1:33764593 nonsynonymous SNV 0.998 0 22 hm6Am_associated_SNPs_1286 0 0 0 0 1 ZNF362 chr1:33764531 3'AG 33764531 Downstream 63bp
540 chr1 45169778 45169778 1 + A G rs377114104 45169776 + 45169756 45169796 41 GTCAGCCAATCATTGGGACCACACACCCCAGCATCGTGGAC GTCAGCCAATCATTGGGACCACGCACCCCAGCATCGTGGAC < 41bp 0.723462968490585 0.522330523033141 NA NA prediction 0.402264890914888 Functional Loss - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45169776 chr1:45169778 synonymous SNV . 0 23 hm6Am_associated_SNPs_1287 0 0 0 0 2 C1orf228 chr1:45169761 3'AG 45169761 Downstream 18bp
541 chr1 45169778 45169778 1 + A G rs377114104 45169776 + 45169756 45169796 41 GTCAGCCAATCATTGGGACCACACACCCCAGCATCGTGGAC GTCAGCCAATCATTGGGACCACGCACCCCAGCATCGTGGAC < 41bp 0.723462968490585 0.522330523033141 NA NA prediction 0.402264890914888 Functional Loss - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45169776 chr1:45169778 synonymous SNV . 0 23 hm6Am_associated_SNPs_1287 0 0 0 0 2 C1orf228 chr1:45169845 5'GT 45169845 Upstream 68bp
542 chrX 55028850 55028850 1 + A G rs2301417 55028848 + 55028828 55028868 41 GTGAGGGCAGGGCCCTCCTCACACAGCATAAGATCCGGTAA GTGAGGGCAGGGCCCTCCTCACGCAGCATAAGATCCGGTAA < 41bp 0.71183309006755 0.510892376231411 NA NA prediction 0.401881427672277 Functional Loss - APEX2 ENSG00000169188 CDS Human protein_coding chrX:55028848 chrX:55028850 synonymous SNV . 0 23 hm6Am_associated_SNPs_1291 0 0 1 0 1 APEX2 chrX:55028864 5'GT 55028864 Upstream 15bp
543 chr4 1955058 1955058 1 + C G LUAD 1955057 + 1955037 1955077 41 TAACTTTTTGTTAGGGATTCACTCATGTTTCGTGTGTAAAG TAACTTTTTGTTAGGGATTCAGTCATGTTTCGTGTGTAAAG < 41bp 0.727409192542229 0.526580961976698 NA NA prediction 0.401656461131061 Functional Loss - NSD2 ENSG00000109685 CDS Human protein_coding chr4:1955057 chr4:1955058 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_1292 0 0 1 0 1 NSD2 chr4:1955051 3'AG 1955051 Downstream 8bp
544 chr17 33482320 33482320 1 + A G STAD 33482318 + 33482298 33482338 41 TCTTGCTGGGGTTCTAGGCCACAGTGATTCTGCATGCAGTG TCTTGCTGGGGTTCTAGGCCACGGTGATTCTGCATGCAGTG < 41bp 0.703863736811453 0.503089896181212 NA NA prediction 0.401547681260482 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33482318 chr17:33482320 synonymous SNV . 0 23 hm6Am_associated_SNPs_1293 0 0 0 0 1 UNC45B chr17:33482315 3'AG 33482315 Downstream 6bp
545 chrX 130217717 130217717 1 + A G UCEC 130217715 + 130217695 130217735 41 CGTGGCTCCCCAGCTGTATCACACAAGACATTTGGCATTAG CGTGGCTCCCCAGCTGTATCACGCAAGACATTTGGCATTAG < 41bp 0.703706044806021 0.502958045816032 NA NA prediction 0.401495997979978 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130217715 chrX:130217717 nonsynonymous SNV 0.618 0 23 hm6Am_associated_SNPs_1294 0 0 0 0 1 ARHGAP36 chrX:130217708 3'AG 130217708 Downstream 10bp
546 chr1 55181650 55181650 1 + C G rs144220243 55181652 + 55181632 55181672 41 CCTGGAAAAGTTCCAGAGCCAGCCTTACCGTGGCGGCTTTC CCTGGAAAAGTTCCAGAGGCAGCCTTACCGTGGCGGCTTTC < 41bp 0.846107417058652 0.645372595432705 NA NA prediction 0.401469643251894 Functional Loss - TTC4 ENSG00000243725 CDS Human protein_coding chr1:55181652 chr1:55181650 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_1295 0 0 1 0 1 TTC4 chr1:55181692 5'GT 55181692 Upstream 43bp
547 chr9 34976675 34976675 1 + A G BLCA 34976673 + 34976653 34976693 41 GGACCCTGAACATCGAGGCCACATAGAGTGGCCTGACTTCT GGACCCTGAACATCGAGGCCACGTAGAGTGGCCTGACTTCT < 41bp 0.711731598069354 0.511028030250336 NA NA prediction 0.401407135638035 Functional Loss - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34976673 chr9:34976675 nonsynonymous SNV 0.554 0 23 hm6Am_associated_SNPs_1296 0 0 0 0 1 PHF24 chr9:34976737 5'GT 34976737 Upstream 63bp
548 chr10 71025536 71025536 1 + T G rs143913672 71025534 + 71025514 71025554 41 GGCTAGAGCACCTGAGGATCACTGTGGGTGTGGACGGCACC GGCTAGAGCACCTGAGGATCACGGTGGGTGTGGACGGCACC < 41bp 0.714559410213248 0.514094521480339 NA NA prediction 0.400929777465819 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71025534 chr10:71025536 synonymous SNV . 0 23 hm6Am_associated_SNPs_1300 0 0 0 0 1 HKDC1 chr10:71025574 5'GT 71025574 Upstream 39bp
549 chr14 76948959 76948959 1 + A G UCEC 76948957 + 76948937 76948977 41 GCAGTGACCAAGATTGTCTCATACCTACTGGTGGCTGAGCC GCAGTGACCAAGATTGTCTCATGCCTACTGGTGGCTGAGCC < 41bp 0.700072780304112 0.4969653870152 NA NA prediction 0.400145560608225 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76948957 chr14:76948959 nonsynonymous SNV 0.919 0 23 hm6Am_associated_SNPs_1306 0 0 1 0 1 ESRRB chr14:76948941 3'AG 76948941 Downstream 19bp
550 chr20 39977338 39977338 1 + G T UCEC 39977340 + 39977320 39977360 41 CCTCGGACTCCCAGCTGGGCACTGCCAGTGAGCCTGAGGGC CCTCGGACTCCCAGCTGGTCACTGCCAGTGAGCCTGAGGGC < 41bp 0.505557581257237 0.866214133035485 NA NA prediction 0.721313103556496 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39977340 chr20:39977338 nonsynonymous SNV 0.499 1 19 hm6Am_associated_SNPs_1308 0 0 0 0 1 LPIN3 chr20:39977259 3'AG 39977259 Downstream 80bp
551 chr17 26851603 26851603 1 + G T CESC 26851605 + 26851585 26851625 41 TGCCCCCACACAGCCCCCGCATTGCGTCACCAGGGCCCGAG TGCCCCCACACAGCCCCCTCATTGCGTCACCAGGGCCCGAG < 41bp 0.49781855676222 0.859531958588252 NA NA prediction 0.719063917176505 Functional Gain - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26851605 chr17:26851603 nonsynonymous SNV 0.819 2 19 hm6Am_associated_SNPs_1310 0 0 0 0 1 FOXN1 chr17:26851521 3'AG 26851521 Downstream 83bp
552 chr1 197887048 197887048 1 + G T OV 197887050 + 197887030 197887070 41 CCGGAGGCCACATCCAAGGCATCATGGAGGAGATGGAGCGC CCGGAGGCCACATCCAAGTCATCATGGAGGAGATGGAGCGC < 41bp 0.493210215676936 0.855095619438532 NA NA prediction 0.710191238877063 Functional Gain - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197887050 chr1:197887048 nonsynonymous SNV 0.999 4 19 hm6Am_associated_SNPs_1316 0 0 0 1 1 LHX9 chr1:197887009 3'AG 197887009 Downstream 40bp
553 chrX 138612926 138612926 1 + G T LUAD 138612928 + 138612908 138612948 41 TCTGCTAGCAAAGGTTATGCAGCGCGTGAACATGATCATGG TCTGCTAGCAAAGGTTATTCAGCGCGTGAACATGATCATGG < 41bp 0.502294304576378 0.857381913824077 NA NA prediction 0.710175218495398 Functional Gain - F9 ENSG00000101981 CDS Human protein_coding chrX:138612928 chrX:138612926 nonsynonymous SNV 0.851 2 19 hm6Am_associated_SNPs_1317 0 0 0 0 1 F9 chrX:138613011 5'GT 138613011 Upstream 86bp
554 chr5 85913886 85913886 1 + G T SARC 85913888 + 85913868 85913908 41 GCGGTATGTTGGGCCAGAGCATCCGGAGGTTCACAACCTCT GCGGTATGTTGGGCCAGATCATCCGGAGGTTCACAACCTCT < 41bp 0.505325803196685 0.860403047938505 NA NA prediction 0.71015448948364 Functional Gain - COX7C ENSG00000127184 CDS Human protein_coding chr5:85913888 chr5:85913886 nonsynonymous SNV 0.356 2 19 hm6Am_associated_SNPs_1318 0 0 1 0 1 COX7C chr5:85913947 5'GT 85913947 Upstream 62bp
555 chr5 6751171 6751171 1 + G T LUAD 6751173 + 6751153 6751193 41 ATTCAGACACACCGCCCTGCACAACGCCCAGTGTTTACCAG ATTCAGACACACCGCCCTTCACAACGCCCAGTGTTTACCAG < 41bp 0.487466872242162 0.855073196705765 NA NA prediction 0.71014639341153 Functional Gain - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6751173 chr5:6751171 nonsynonymous SNV 0.517 1 19 hm6Am_associated_SNPs_1319 0 0 1 0 1 PAPD7 chr5:6751152 3'AG 6751152 Downstream 20bp
556 chr22 35802622 35802622 1 + G T LUSC 35802624 + 35802604 35802644 41 TCCGTGCCAAGGCCACCCGCATCTCTATCCAGTGCCGCAGC TCCGTGCCAAGGCCACCCTCATCTCTATCCAGTGCCGCAGC < 41bp 0.507030513615222 0.861708870939212 NA NA prediction 0.70935671464798 Functional Gain - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35802624 chr22:35802622 nonsynonymous SNV 0.993 1 19 hm6Am_associated_SNPs_1322 0 0 1 0 2 MCM5 chr22:35802546 3'AG 35802546 Downstream 77bp
557 chr22 35802622 35802622 1 + G T LUSC 35802624 + 35802604 35802644 41 TCCGTGCCAAGGCCACCCGCATCTCTATCCAGTGCCGCAGC TCCGTGCCAAGGCCACCCTCATCTCTATCCAGTGCCGCAGC < 41bp 0.507030513615222 0.861708870939212 NA NA prediction 0.70935671464798 Functional Gain - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35802624 chr22:35802622 nonsynonymous SNV 0.993 1 19 hm6Am_associated_SNPs_1322 0 0 1 0 2 MCM5 chr22:35802718 5'GT 35802718 Upstream 97bp
558 chr8 145138899 145138899 1 + G T LUSC 145138901 + 145138881 145138921 41 CAGAACATGACCTTCTGGGCACTGAGGCTTGGCTTGAAGCC CAGAACATGACCTTCTGGTCACTGAGGCTTGGCTTGAAGCC < 41bp 0.49549420950778 0.853423124636322 NA NA prediction 0.706846249272644 Functional Gain - GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145138901 chr8:145138899 nonsynonymous SNV 0.982 4 19 hm6Am_associated_SNPs_1324 0 0 1 0 2 GPAA1 chr8:145138842 3'AG 145138842 Downstream 58bp
559 chr8 145138899 145138899 1 + G T LUSC 145138901 + 145138881 145138921 41 CAGAACATGACCTTCTGGGCACTGAGGCTTGGCTTGAAGCC CAGAACATGACCTTCTGGTCACTGAGGCTTGGCTTGAAGCC < 41bp 0.49549420950778 0.853423124636322 NA NA prediction 0.706846249272644 Functional Gain - GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145138901 chr8:145138899 nonsynonymous SNV 0.982 4 19 hm6Am_associated_SNPs_1324 0 0 1 0 2 GPAA1 chr8:145138943 5'GT 145138943 Upstream 45bp
560 chr16 2577778 2577778 1 + G T LUSC 2577780 + 2577760 2577800 41 CTCCCTCCTCCCAGGGCTGCACCTGGAGGGCCCCTTCATCA CTCCCTCCTCCCAGGGCTTCACCTGGAGGGCCCCTTCATCA < 41bp 0.511902244669574 0.863902474336499 NA NA prediction 0.704000459333851 Functional Gain - AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577780 chr16:2577778 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_1327 0 0 1 0 1 AMDHD2 chr16:2577774 3'AG 2577774 Downstream 5bp
561 chr6 167708048 167708048 1 + G T LGG 167708050 + 167708030 167708070 41 TGGGTGTCACAGCGCTCAGCACCCTCTATGGAGGCATGCTC TGGGTGTCACAGCGCTCATCACCCTCTATGGAGGCATGCTC < 41bp 0.525247755414188 0.876701188419561 NA NA prediction 0.702906866010747 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708050 chr6:167708048 nonsynonymous SNV 0.092 3 19 hm6Am_associated_SNPs_1328 0 0 0 0 1 UNC93A chr6:167708005 3'AG 167708005 Downstream 44bp
562 chr12 132425925 132425925 1 + G T LUSC 132425927 + 132425907 132425947 41 GCCCACGTTTGCCTTTGCGCACAAGGACCGGGACGTTCAGG GCCCACGTTTGCCTTTGCTCACAAGGACCGGGACGTTCAGG < 41bp 0.512947289384662 0.863835518642143 NA NA prediction 0.701776458514962 Functional Gain - PUS1 ENSG00000177192 CDS Human protein_coding chr12:132425927 chr12:132425925 synonymous SNV . 0 19 hm6Am_associated_SNPs_1332 0 0 1 0 1 PUS1 chr12:132425837 3'AG 132425837 Downstream 89bp
563 chr11 5013249 5013249 1 + G T PAAD 5013251 + 5013231 5013271 41 GCATTCTTTGGGCCTGCAGCACTCTGGGAATCAGAGCTCCA GCATTCTTTGGGCCTGCATCACTCTGGGAATCAGAGCTCCA < 41bp 0.482706645900231 0.850086153193406 NA NA prediction 0.700172306386812 Functional Gain - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5013251 chr11:5013249 nonsynonymous SNV 0.368 0 19 hm6Am_associated_SNPs_1335 0 0 0 0 1 MMP26 chr11:5013194 3'AG 5013194 Downstream 56bp
564 chr19 2211153 2211153 1 + G T UCEC 2211155 + 2211135 2211175 41 ACCTCCGAGCGTGCAGCGGCACTCCCCCAACCCGCTGCTGG ACCTCCGAGCGTGCAGCGTCACTCCCCCAACCCGCTGCTGG < 41bp 0.489823667822332 0.848777698415708 NA NA prediction 0.697555396831417 Functional Gain - DOT1L ENSG00000104885 CDS Human protein_coding chr19:2211155 chr19:2211153 synonymous SNV . 0 19 hm6Am_associated_SNPs_1336 0 0 1 0 1 DOT1L chr19:2211211 5'GT 2211211 Upstream 59bp
565 chr9 96435887 96435887 1 + G T UCEC 96435889 + 96435869 96435909 41 AGCCCCCGGCCTCCCCCAGCACACAGGAAGCCATTCAGGGA AGCCCCCGGCCTCCCCCATCACACAGGAAGCCATTCAGGGA < 41bp 0.474251283535408 0.848702385368823 NA NA prediction 0.697404770737645 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96435889 chr9:96435887 nonsynonymous SNV 0.983 4 19 hm6Am_associated_SNPs_1337 0 0 1 0 1 PHF2 chr9:96435867 3'AG 96435867 Downstream 21bp
566 chr9 40716223 40716223 1 + G T LUAD 40716225 + 40716205 40716245 41 GAGGCTGTCGTTACTGCTGCACTTGGCTGTTTTTCTTTGGA GAGGCTGTCGTTACTGCTTCACTTGGCTGTTTTTCTTTGGA < 41bp 0.493181892833962 0.846730146795914 NA NA prediction 0.693460293591828 Functional Gain - FAM74A3 ENSG00000204844 ncRNA_exonic Human other chr9:40716225 chr9:40716223 . . 0 19 hm6Am_associated_SNPs_1347 0 0 0 0 1 FAM74A3 chr9:40716311 5'GT 40716311 Upstream 89bp
567 chr7 100466148 100466148 1 + G T LUSC 100466150 + 100466130 100466170 41 CGCCACCTCCTGCCTACCGCACGGGCTCCCTGAAGCCAAAT CGCCACCTCCTGCCTACCTCACGGGCTCCCTGAAGCCAAAT < 41bp 0.521630608634491 0.867654755635303 NA NA prediction 0.692048294001624 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100466150 chr7:100466148 nonsynonymous SNV 0.279 0 19 hm6Am_associated_SNPs_1349 0 0 0 0 1 TRIP6 chr7:100466117 3'AG 100466117 Downstream 32bp
568 chr19 42071329 42071329 1 + G T rs117834151 42071331 + 42071311 42071351 41 TGAGGGAGGGACTGCAGCGCAGGAACTGAGGAGGAGAGGCC TGAGGGAGGGACTGCAGCTCAGGAACTGAGGAGGAGAGGCC < 41bp 0.4699727507364 0.844264346482859 NA NA prediction 0.688528692965719 Functional Gain - CEACAM21 ENSG00000007129 UTR5 Human protein_coding chr19:42071331 chr19:42071329 . . 0 19 hm6Am_associated_SNPs_1354 0 0 0 0 1 CEACAM21 chr19:42071410 5'GT 42071410 Upstream 82bp
569 chr5 79351687 79351687 1 + G T LUAD 79351689 + 79351669 79351709 41 GCTGGCAGACGGAAGGCGGCACAGGATCCTCCTGAGGCTGA GCTGGCAGACGGAAGGCGTCACAGGATCCTCCTGAGGCTGA < 41bp 0.462976707735663 0.843884392851526 NA NA prediction 0.687768785703053 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79351689 chr5:79351687 synonymous SNV . 0 19 hm6Am_associated_SNPs_1357 0 0 0 0 1 THBS4 chr5:79351608 3'AG 79351608 Downstream 80bp
570 chr11 67351964 67351964 1 + G T rs192307201 67351966 + 67351946 67351986 41 GCCCTGCGCATGCTGCTGGCAGATCAGGGCCAGAGCTGGAA GCCCTGCGCATGCTGCTGTCAGATCAGGGCCAGAGCTGGAA < 41bp 0.469527149519269 0.843708725077643 NA NA prediction 0.687417450155286 Functional Gain - GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67351966 chr11:67351964 nonsynonymous SNV 0.998 0 19 hm6Am_associated_SNPs_1358 0 0 1 0 2 GSTP1 chr11:67351935 3'AG 67351935 Downstream 30bp
571 chr11 67351964 67351964 1 + G T rs192307201 67351966 + 67351946 67351986 41 GCCCTGCGCATGCTGCTGGCAGATCAGGGCCAGAGCTGGAA GCCCTGCGCATGCTGCTGTCAGATCAGGGCCAGAGCTGGAA < 41bp 0.469527149519269 0.843708725077643 NA NA prediction 0.687417450155286 Functional Gain - GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67351966 chr11:67351964 nonsynonymous SNV 0.998 0 19 hm6Am_associated_SNPs_1358 0 0 1 0 2 GSTP1 chr11:67352041 5'GT 67352041 Upstream 78bp
572 chr14 90422253 90422253 1 + G T rs577403021 90422255 + 90422235 90422275 41 CCAGGGTTTGAACTGCGCGCATGCGCGGCGGCCGCCGAAGG CCAGGGTTTGAACTGCGCTCATGCGCGGCGGCCGCCGAAGG < 41bp 0.526422148086193 0.870016801965904 NA NA prediction 0.687189307759421 Functional Gain - TDP1 ENSG00000042088 UTR5 Human protein_coding chr14:90422255 chr14:90422253 . . 0 19 hm6Am_associated_SNPs_1360 1 0 1 0 1 TDP1 chr14:90422314 5'GT 90422314 Upstream 62bp
573 chr14 105926711 105926711 1 + G T HNSC 105926713 + 105926693 105926733 41 AGCTCTGTGGGCACCTTCGCACGGGCCCTGGACTGCAGCAG AGCTCTGTGGGCACCTTCTCACGGGCCCTGGACTGCAGCAG < 41bp 0.462587229220463 0.843100759564239 NA NA prediction 0.686201519128477 Functional Gain - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105926713 chr14:105926711 nonsynonymous SNV 0.967 3 19 hm6Am_associated_SNPs_1363 0 0 1 0 2 MTA1 chr14:105926695 3'AG 105926695 Downstream 17bp
574 chr14 105926711 105926711 1 + G T HNSC 105926713 + 105926693 105926733 41 AGCTCTGTGGGCACCTTCGCACGGGCCCTGGACTGCAGCAG AGCTCTGTGGGCACCTTCTCACGGGCCCTGGACTGCAGCAG < 41bp 0.462587229220463 0.843100759564239 NA NA prediction 0.686201519128477 Functional Gain - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105926713 chr14:105926711 nonsynonymous SNV 0.967 3 19 hm6Am_associated_SNPs_1363 0 0 1 0 2 MTA1 chr14:105926794 5'GT 105926794 Upstream 84bp
575 chr14 89291101 89291101 1 + G T LUAD 89291103 + 89291083 89291123 41 CCTGGAGCTATTTTAGGCGCAGGAAGTTCCAGCTCTGCGCC CCTGGAGCTATTTTAGGCTCAGGAAGTTCCAGCTCTGCGCC < 41bp 0.519620054860053 0.860866196581419 NA NA prediction 0.682492283442732 Functional Gain - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89291103 chr14:89291101 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_1369 0 0 1 0 1 TTC8 chr14:89291165 5'GT 89291165 Upstream 65bp
576 chr2 114355147 114355147 1 + G T SARC 114355149 + 114355129 114355169 41 GCCAAGCTGGGGGCATCGGCAAGGCCAAGCTGCGCAGCATG GCCAAGCTGGGGGCATCGTCAAGGCCAAGCTGCGCAGCATG < 41bp 0.47640133250294 0.841105310951263 NA NA prediction 0.682210621902527 Functional Gain - WASH2P ENSG00000146556 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:114355149 chr2:114355147 . . 0 19 hm6Am_associated_SNPs_1370 0 0 0 0 1 WASH2P chr2:114355063 3'AG 114355063 Downstream 85bp
577 chr1 170501415 170501415 1 + G T UCEC 170501417 + 170501397 170501437 41 GGAACTGAGGAGACTAAAGCAGACTAAAGGTTACAAGATGG GGAACTGAGGAGACTAAATCAGACTAAAGGTTACAAGATGG < 41bp 0.47835470860506 0.841068245111143 NA NA prediction 0.682136490222285 Functional Gain - GORAB ENSG00000120370 CDS Human protein_coding chr1:170501417 chr1:170501415 nonsynonymous SNV 0.995 2 19 hm6Am_associated_SNPs_1371 0 0 1 0 1 GORAB chr1:170501425 5'GT 170501425 Upstream 11bp
578 chr3 133119341 133119341 1 + G T THYM 133119343 + 133119323 133119363 41 GGAAACACAACTGCGGATGCACCTGGAGAGCAAAGCCACAC GGAAACACAACTGCGGATTCACCTGGAGAGCAAAGCCACAC < 41bp 0.461901931089502 0.839497040102108 NA NA prediction 0.678994080204216 Functional Gain - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133119343 chr3:133119341 nonsynonymous SNV 0.824 1 19 hm6Am_associated_SNPs_1380 0 0 0 0 1 BFSP2 chr3:133119416 5'GT 133119416 Upstream 76bp
579 chr10 105330684 105330684 1 + G T SARC 105330686 + 105330666 105330706 41 ATGCCACCACAAGCAGAAGCACTGTCCGGCAGTGCTGCCCA ATGCCACCACAAGCAGAATCACTGTCCGGCAGTGCTGCCCA < 41bp 0.540227367177083 0.879700758527544 NA NA prediction 0.678946782700922 Functional Gain - NEURL1 ENSG00000107954 CDS Human protein_coding chr10:105330686 chr10:105330684 nonsynonymous SNV 0.987 2 19 hm6Am_associated_SNPs_1381 0 0 0 0 1 NEURL1 chr10:105330629 3'AG 105330629 Downstream 56bp
580 chr2 220135943 220135943 1 + G T BLCA 220135945 + 220135925 220135965 41 TCCACAGCCTTGGTCGGGGCACTGGCTCTGACGTCACCTCA TCCACAGCCTTGGTCGGGTCACTGGCTCTGACGTCACCTCA < 41bp 0.483720417326494 0.838670631866659 NA NA prediction 0.677341263733318 Functional Gain - TUBA4B ENSG00000243910 ncRNA_exonic Human protein_coding chr2:220135945 chr2:220135943 . . 0 19 hm6Am_associated_SNPs_1382 0 0 0 0 1 TUBA4B chr2:220135888 3'AG 220135888 Downstream 56bp
581 chr1 55165774 55165774 1 + G T UCEC 55165776 + 55165756 55165796 41 TGGGAAAGGCAACAACAAGCAGTCACAGGGGCTCGGAGCTG TGGGAAAGGCAACAACAATCAGTCACAGGGGCTCGGAGCTG < 41bp 0.464719424384352 0.838507176692714 NA NA prediction 0.677014353385429 Functional Gain - MROH7-TTC4 ENSG00000184313 CDS Human protein_coding chr1:55165776 chr1:55165774 nonsynonymous SNV 0.001 1 19 hm6Am_associated_SNPs_1385 0 0 0 0 2 MROH7-TTC4 chr1:55165742 3'AG 55165742 Downstream 33bp
582 chr1 55165774 55165774 1 + G T UCEC 55165776 + 55165756 55165796 41 TGGGAAAGGCAACAACAAGCAGTCACAGGGGCTCGGAGCTG TGGGAAAGGCAACAACAATCAGTCACAGGGGCTCGGAGCTG < 41bp 0.464719424384352 0.838507176692714 NA NA prediction 0.677014353385429 Functional Gain - MROH7-TTC4 ENSG00000184313 CDS Human protein_coding chr1:55165776 chr1:55165774 nonsynonymous SNV 0.001 1 19 hm6Am_associated_SNPs_1385 0 0 0 0 2 MROH7-TTC4 chr1:55165749 3'AG 55165749 Downstream 26bp
583 chr19 53050831 53050831 1 + G T COAD 53050833 + 53050813 53050853 41 TGGAAATTCCTGAACCCTGCACAGAGGGCTTTGTACAGGGA TGGAAATTCCTGAACCCTTCACAGAGGGCTTTGTACAGGGA < 41bp 0.531674196740595 0.867882950995261 NA NA prediction 0.672417508509332 Functional Gain - ZNF808 ENSG00000198482 CDS Human protein_coding chr19:53050833 chr19:53050831 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_1396 0 0 0 0 2 ZNF808 chr19:53050765 3'AG 53050765 Downstream 67bp
584 chr19 53050831 53050831 1 + G T COAD 53050833 + 53050813 53050853 41 TGGAAATTCCTGAACCCTGCACAGAGGGCTTTGTACAGGGA TGGAAATTCCTGAACCCTTCACAGAGGGCTTTGTACAGGGA < 41bp 0.531674196740595 0.867882950995261 NA NA prediction 0.672417508509332 Functional Gain - ZNF808 ENSG00000198482 CDS Human protein_coding chr19:53050833 chr19:53050831 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_1396 0 0 0 0 2 ZNF808 chr19:53050891 5'GT 53050891 Upstream 61bp
585 chr19 38085982 38085982 1 + G T rs16974142 38085984 + 38085964 38086004 41 TCCCGGGCTAGAAGAGCTGCAAAAGGCTGTCAGGTAAGGTC TCCCGGGCTAGAAGAGCTTCAAAAGGCTGTCAGGTAAGGTC < 41bp 0.476495578981434 0.83583031705966 NA NA prediction 0.671660634119319 Functional Gain - ZNF540 ENSG00000171817 UTR5 Human protein_coding chr19:38085984 chr19:38085982 . . 0 19 hm6Am_associated_SNPs_1398 0 0 0 0 1 ZNF540 chr19:38085996 5'GT 38085996 Upstream 15bp
586 chr16 2256181 2256181 1 + G T SARC 2256183 + 2256163 2256203 41 TCTGGCAGGCCCACAGCGGCATCTGCACCCGGACGGTGCAG TCTGGCAGGCCCACAGCGTCATCTGCACCCGGACGGTGCAG < 41bp 0.472275750236052 0.835821981367265 NA NA prediction 0.67164396273453 Functional Gain - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2256183 chr16:2256181 nonsynonymous SNV 0.923 4 19 hm6Am_associated_SNPs_1399 0 0 1 0 1 MLST8 chr16:2256215 5'GT 2256215 Upstream 35bp
587 chr18 60243765 60243765 1 + G T COAD 60243767 + 60243747 60243787 41 ACTTACAGACTGAGATACGCACCTCCCCTCCCCCCTTCTAA ACTTACAGACTGAGATACTCACCTCCCCTCCCCCCTTCTAA < 41bp 0.544136391117119 0.879799773833582 NA NA prediction 0.671326765432926 Functional Gain - ZCCHC2 ENSG00000141664 CDS Human protein_coding chr18:60243767 chr18:60243765 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_1401 0 0 1 0 1 ZCCHC2 chr18:60243745 3'AG 60243745 Downstream 21bp
588 chr19 50475282 50475282 1 + G T UCEC 50475284 + 50475264 50475304 41 GCCTCGGGTTCAAATGGAGCACGAAGGAGAGTTCACCTGCC GCCTCGGGTTCAAATGGATCACGAAGGAGAGTTCACCTGCC < 41bp 0.515784498932271 0.851315601632045 NA NA prediction 0.671062205399548 Functional Gain - SIGLEC16 ENSG00000161643 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:50475284 chr19:50475282 . . 0 19 hm6Am_associated_SNPs_1404 0 0 0 0 1 SIGLEC16 chr19:50475358 5'GT 50475358 Upstream 77bp
589 chr21 15399866 15399866 1 + G T LUAD 15399868 + 15399848 15399888 41 TCGCTCTGTGACCTGCTGGCATTGAATGATTTATAGCTAAG TCGCTCTGTGACCTGCTGTCATTGAATGATTTATAGCTAAG < 41bp 0.515239582279481 0.850676592783781 NA NA prediction 0.6708740210086 Functional Gain - ANKRD20A11P;LIPI ENSG00000224905 ncRNA_exonic Human antisense chr21:15399868 chr21:15399866 . . 0 19 hm6Am_associated_SNPs_1405 0 0 1 0 1 ANKRD20A11P;LIPI chr21:15399918 5'GT 15399918 Upstream 53bp
590 chr13 28367757 28367757 1 + G T UCEC 28367759 + 28367739 28367779 41 TGCGCACGGCTTTCACCAGCACGCAGCTGCTAGAGCTGGAG TGCGCACGGCTTTCACCATCACGCAGCTGCTAGAGCTGGAG < 41bp 0.46594931754092 0.835378561610618 NA NA prediction 0.670757123221235 Functional Gain - GSX1 ENSG00000169840 CDS Human protein_coding chr13:28367759 chr13:28367757 nonsynonymous SNV 1.000 5 19 hm6Am_associated_SNPs_1406 0 0 0 0 1 GSX1 chr13:28367703 3'AG 28367703 Downstream 55bp
591 chr11 119027091 119027091 1 + G T COAD 119027093 + 119027073 119027113 41 TCCCTCATGAAGTCCCTGGCACAGGGGGGCCGTACCATCAT TCCCTCATGAAGTCCCTGTCACAGGGGGGCCGTACCATCAT < 41bp 0.444901666707107 0.835040558849577 NA NA prediction 0.670081117699154 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119027093 chr11:119027091 nonsynonymous SNV 0.995 2 19 hm6Am_associated_SNPs_1407 0 0 0 0 2 ABCG4 chr11:119027039 3'AG 119027039 Downstream 53bp
592 chr11 119027091 119027091 1 + G T COAD 119027093 + 119027073 119027113 41 TCCCTCATGAAGTCCCTGGCACAGGGGGGCCGTACCATCAT TCCCTCATGAAGTCCCTGTCACAGGGGGGCCGTACCATCAT < 41bp 0.444901666707107 0.835040558849577 NA NA prediction 0.670081117699154 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119027093 chr11:119027091 nonsynonymous SNV 0.995 2 19 hm6Am_associated_SNPs_1407 0 0 0 0 2 ABCG4 chr11:119027162 5'GT 119027162 Upstream 72bp
593 chr6 126278260 126278260 1 + G T COAD 126278262 + 126278242 126278282 41 AGCCCAAGGACTACGACAGCACCTGCGTGTTCTGCCGGATC AGCCCAAGGACTACGACATCACCTGCGTGTTCTGCCGGATC < 41bp 0.537326563814976 0.872341016516677 NA NA prediction 0.670028905403402 Functional Gain - HINT3 ENSG00000111911 CDS Human protein_coding chr6:126278262 chr6:126278260 nonsynonymous SNV 0.802 1 19 hm6Am_associated_SNPs_1408 0 0 1 0 1 HINT3 chr6:126278324 5'GT 126278324 Upstream 65bp
594 chr16 21726339 21726339 1 + G T UCEC 21726341 + 21726321 21726361 41 AATGTCAGCCAGATGGGCGCACTGCTGGCTGGGGTCAGCAC AATGTCAGCCAGATGGGCTCACTGCTGGCTGGGGTCAGCAC < 41bp 0.448568786083427 0.834095352322927 NA NA prediction 0.668190704645853 Functional Gain - OTOA ENSG00000155719 CDS Human protein_coding chr16:21726341 chr16:21726339 nonsynonymous SNV 0.041 0 19 hm6Am_associated_SNPs_1410 0 0 0 0 1 OTOA chr16:21726306 3'AG 21726306 Downstream 34bp
595 chr17 6939846 6939846 1 + G T HNSC 6939848 + 6939828 6939868 41 GCGGCGTTTGAGGAGCAGGCAGCGCGCGTCTCCTGGATCGC GCGGCGTTTGAGGAGCAGTCAGCGCGCGTCTCCTGGATCGC < 41bp 0.456360888529259 0.834022807277521 NA NA prediction 0.668045614555043 Functional Gain - SLC16A13 ENSG00000174327 CDS Human protein_coding chr17:6939848 chr17:6939846 nonsynonymous SNV 0.962 1 19 hm6Am_associated_SNPs_1412 0 0 1 0 1 SLC16A13 chr17:6939900 5'GT 6939900 Upstream 55bp
596 chr6 43154163 43154163 1 + G T SARC 43154165 + 43154145 43154185 41 GGACGAGGGCGAGTTCCGGCAGAGCAACAACGGCATTCCCC GGACGAGGGCGAGTTCCGTCAGAGCAACAACGGCATTCCCC < 41bp 0.485273660401542 0.834002063443127 NA NA prediction 0.668004126886253 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43154165 chr6:43154163 synonymous SNV . 0 19 hm6Am_associated_SNPs_1413 0 0 1 0 1 CUL9 chr6:43154193 5'GT 43154193 Upstream 31bp
597 chr11 64875124 64875124 1 + G T LUSC 64875126 + 64875106 64875146 41 CGGCTGGCCACCAACATGGCAGTGATCACCGACTTCAGCGC CGGCTGGCCACCAACATGTCAGTGATCACCGACTTCAGCGC < 41bp 0.453704650962758 0.833962602476641 NA NA prediction 0.667925204953283 Functional Gain - VPS51 ENSG00000149823 CDS Human protein_coding chr11:64875126 chr11:64875124 nonsynonymous SNV 0.997 1 19 hm6Am_associated_SNPs_1414 0 0 1 0 2 VPS51 chr11:64875053 3'AG 64875053 Downstream 72bp
598 chr11 64875124 64875124 1 + G T LUSC 64875126 + 64875106 64875146 41 CGGCTGGCCACCAACATGGCAGTGATCACCGACTTCAGCGC CGGCTGGCCACCAACATGTCAGTGATCACCGACTTCAGCGC < 41bp 0.453704650962758 0.833962602476641 NA NA prediction 0.667925204953283 Functional Gain - VPS51 ENSG00000149823 CDS Human protein_coding chr11:64875126 chr11:64875124 nonsynonymous SNV 0.997 1 19 hm6Am_associated_SNPs_1414 0 0 1 0 2 VPS51 chr11:64875199 5'GT 64875199 Upstream 76bp
599 chr3 50307738 50307738 1 + G T UCEC 50307740 + 50307720 50307760 41 CAGGGACTCCCAACCCCAGCACTCCCCAGGGAAGGAGCCCT CAGGGACTCCCAACCCCATCACTCCCCAGGGAAGGAGCCCT < 41bp 0.51416583107206 0.847878812659435 NA NA prediction 0.667425963174749 Functional Gain - SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50307740 chr3:50307738 . . 0 19 hm6Am_associated_SNPs_1415 0 0 1 0 1 SEMA3B chr3:50307807 5'GT 50307807 Upstream 70bp
600 chr15 76071776 76071776 1 + G T LUSC 76071778 + 76071758 76071798 41 GCCCTGGACTCAAGCTCCGCAATAATCAATCAACTCAATGA GCCCTGGACTCAAGCTCCTCAATAATCAATCAACTCAATGA < 41bp 0.484954109999335 0.833442886337411 NA NA prediction 0.666885772674822 Functional Gain - MIR4313;UBE2Q2 ENSG00000187812 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:76071778 chr15:76071776 . . 0 19 hm6Am_associated_SNPs_1416 0 0 0 0 1 MIR4313;UBE2Q2 chr15:76071814 5'GT 76071814 Upstream 39bp
601 chr19 39839024 39839024 1 + G T rs137975241 39839026 + 39839006 39839046 41 CAGATGAGGCAGAATGGGGCACAGGTGAGCCCAGATCTGAT CAGATGAGGCAGAATGGGTCACAGGTGAGCCCAGATCTGAT < 41bp 0.524424534192606 0.85744644169983 NA NA prediction 0.666043815014449 Functional Gain - SAMD4B ENSG00000179134 UTR5 Human protein_coding chr19:39839026 chr19:39839024 . . 0 19 hm6Am_associated_SNPs_1419 0 0 1 0 2 SAMD4B chr19:39838928 3'AG 39838928 Downstream 97bp
602 chr19 39839024 39839024 1 + G T rs137975241 39839026 + 39839006 39839046 41 CAGATGAGGCAGAATGGGGCACAGGTGAGCCCAGATCTGAT CAGATGAGGCAGAATGGGTCACAGGTGAGCCCAGATCTGAT < 41bp 0.524424534192606 0.85744644169983 NA NA prediction 0.666043815014449 Functional Gain - SAMD4B ENSG00000179134 UTR5 Human protein_coding chr19:39839026 chr19:39839024 . . 0 19 hm6Am_associated_SNPs_1419 0 0 1 0 2 SAMD4B chr19:39839029 5'GT 39839029 Upstream 6bp
603 chr3 35778767 35778767 1 + G T LUAD 35778769 + 35778749 35778789 41 GGTGGGGCAGTCCCAACAGCAGCCACCACAGCAGCAGCCCT GGTGGGGCAGTCCCAACATCAGCCACCACAGCAGCAGCCCT < 41bp 0.453722354836881 0.8323794098624 NA NA prediction 0.664758819724801 Functional Gain - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35778769 chr3:35778767 nonsynonymous SNV 0.865 0 19 hm6Am_associated_SNPs_1421 0 0 0 0 3 ARPP21 chr3:35778670 3'AG 35778670 Downstream 98bp
604 chr3 35778767 35778767 1 + G T LUAD 35778769 + 35778749 35778789 41 GGTGGGGCAGTCCCAACAGCAGCCACCACAGCAGCAGCCCT GGTGGGGCAGTCCCAACATCAGCCACCACAGCAGCAGCCCT < 41bp 0.453722354836881 0.8323794098624 NA NA prediction 0.664758819724801 Functional Gain - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35778769 chr3:35778767 nonsynonymous SNV 0.865 0 19 hm6Am_associated_SNPs_1421 0 0 0 0 3 ARPP21 chr3:35778675 3'AG 35778675 Downstream 93bp
605 chr3 35778767 35778767 1 + G T LUAD 35778769 + 35778749 35778789 41 GGTGGGGCAGTCCCAACAGCAGCCACCACAGCAGCAGCCCT GGTGGGGCAGTCCCAACATCAGCCACCACAGCAGCAGCCCT < 41bp 0.453722354836881 0.8323794098624 NA NA prediction 0.664758819724801 Functional Gain - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35778769 chr3:35778767 nonsynonymous SNV 0.865 0 19 hm6Am_associated_SNPs_1421 0 0 0 0 3 ARPP21 chr3:35778854 5'GT 35778854 Upstream 88bp
606 chr1 162468011 162468011 1 + G T CHOL 162468013 + 162467993 162468033 41 CCGCCGAGTATGGTTTCCGCAAAGAGAGGGCGGCGCTGGAA CCGCCGAGTATGGTTTCCTCAAAGAGAGGGCGGCGCTGGAA < 41bp 0.543859229999076 0.876123797773755 NA NA prediction 0.664529135549357 Functional Gain - UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162468013 chr1:162468011 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_1423 0 0 1 0 1 UHMK1 chr1:162468058 5'GT 162468058 Upstream 48bp
607 chr1 32687573 32687573 1 - C A LUAD 32687571 - 32687551 32687591 41 CGCTCTGTGGGGTGGCACGCAGCCGCTGCTGAAGCGGGCCT CGCTCTGTGGGGTGGCACTCAGCCGCTGCTGAAGCGGGCCT < 41bp 0.437138773908403 0.832063230289568 NA NA prediction 0.664126460579135 Functional Gain - TMEM234 ENSG00000160055 CDS Human protein_coding chr1:32687571 chr1:32687573 synonymous SNV . 0 19 hm6Am_associated_SNPs_1424 0 0 1 0 1 TMEM234 chr1:32687619 3'AG 32687619 Downstream 47bp
608 chr1 150922974 150922974 1 + G T UCEC 150922976 + 150922956 150922996 41 TCTGCCCCAGCACCCTCAGCACTCCCGGCCCCTCCAGCACC TCTGCCCCAGCACCCTCATCACTCCCGGCCCCTCCAGCACC < 41bp 0.443188676215705 0.830654830647731 NA NA prediction 0.661309661295462 Functional Gain - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150922976 chr1:150922974 nonsynonymous SNV 0.024 0 19 hm6Am_associated_SNPs_1430 0 0 1 0 1 SETDB1 chr1:150922934 3'AG 150922934 Downstream 41bp
609 chr10 88728331 88728331 1 + G T LGG 88728333 + 88728313 88728353 41 GGGCTTGCAGGACCTGAAGCAACAGGTGGAGGGGACCGCCC GGGCTTGCAGGACCTGAATCAACAGGTGGAGGGGACCGCCC < 41bp 0.441169095887161 0.830654401433969 NA NA prediction 0.661308802867938 Functional Gain - ADIRF ENSG00000148671 CDS Human protein_coding chr10:88728333 chr10:88728331 nonsynonymous SNV 0.998 1 19 hm6Am_associated_SNPs_1431 0 0 0 0 1 ADIRF chr10:88728362 5'GT 88728362 Upstream 32bp
610 chr11 1469081 1469081 1 + G T LUSC 1469083 + 1469063 1469103 41 AGGCCCATCCCCAATTCAGCAAAGAAGACAGGTATACACCC AGGCCCATCCCCAATTCATCAAAGAAGACAGGTATACACCC < 41bp 0.46407631134236 0.830075455351417 NA NA prediction 0.660150910702834 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1469083 chr11:1469081 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_1437 0 0 0 0 2 BRSK2 chr11:1469028 3'AG 1469028 Downstream 54bp
611 chr11 1469081 1469081 1 + G T LUSC 1469083 + 1469063 1469103 41 AGGCCCATCCCCAATTCAGCAAAGAAGACAGGTATACACCC AGGCCCATCCCCAATTCATCAAAGAAGACAGGTATACACCC < 41bp 0.46407631134236 0.830075455351417 NA NA prediction 0.660150910702834 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1469083 chr11:1469081 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_1437 0 0 0 0 2 BRSK2 chr11:1469093 5'GT 1469093 Upstream 13bp
612 chr6 348863 348863 1 + G T HNSC 348865 + 348845 348885 41 AATATAAGGAGCAAGGGCGCACAGAGCCCCAGCCCGGCGCC AATATAAGGAGCAAGGGCTCACAGAGCCCCAGCCCGGCGCC < 41bp 0.460040458543827 0.829910133946615 NA NA prediction 0.65982026789323 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348865 chr6:348863 nonsynonymous SNV 0.139 0 19 hm6Am_associated_SNPs_1438 0 0 1 0 1 DUSP22 chr6:348769 3'AG 348769 Downstream 95bp
613 chr3 184009935 184009935 1 + G T LUAD 184009937 + 184009917 184009957 41 CCCGCTTCCGCGTGCTGGGCACTCTCTCCAACTCCCGTGAC CCCGCTTCCGCGTGCTGGTCACTCTCTCCAACTCCCGTGAC < 41bp 0.53706322430673 0.86687830211681 NA NA prediction 0.65963015562016 Functional Gain - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184009937 chr3:184009935 nonsynonymous SNV 1.000 5 19 hm6Am_associated_SNPs_1440 0 0 0 0 1 ECE2 chr3:184009850 3'AG 184009850 Downstream 86bp
614 chr16 67911468 67911468 1 + G T LIHC 67911470 + 67911450 67911490 41 CGCCACTGAACCACTTTCGCAGGATCATCTGGTGCCCCTTC CGCCACTGAACCACTTTCTCAGGATCATCTGGTGCCCCTTC < 41bp 0.515152114529555 0.842705989815823 NA NA prediction 0.655107750572535 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67911470 chr16:67911468 nonsynonymous SNV 0.998 4 19 hm6Am_associated_SNPs_1451 0 0 1 0 2 EDC4 chr16:67911412 3'AG 67911412 Downstream 57bp
615 chr16 67911468 67911468 1 + G T LIHC 67911470 + 67911450 67911490 41 CGCCACTGAACCACTTTCGCAGGATCATCTGGTGCCCCTTC CGCCACTGAACCACTTTCTCAGGATCATCTGGTGCCCCTTC < 41bp 0.515152114529555 0.842705989815823 NA NA prediction 0.655107750572535 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67911470 chr16:67911468 nonsynonymous SNV 0.998 4 19 hm6Am_associated_SNPs_1451 0 0 1 0 2 EDC4 chr16:67911559 5'GT 67911559 Upstream 92bp
616 chr20 43034788 43034788 1 + G T LUAD 43034790 + 43034770 43034810 41 GCGGGGACCGGGCCACGGGCAAACACTACGGTGCCTCGAGC GCGGGGACCGGGCCACGGTCAAACACTACGGTGCCTCGAGC < 41bp 0.428928169862601 0.827158256409844 NA NA prediction 0.654316512819688 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034790 chr20:43034788 nonsynonymous SNV 0.796 5 19 hm6Am_associated_SNPs_1455 0 0 1 0 2 HNF4A chr20:43034698 3'AG 43034698 Downstream 91bp
617 chr20 43034788 43034788 1 + G T LUAD 43034790 + 43034770 43034810 41 GCGGGGACCGGGCCACGGGCAAACACTACGGTGCCTCGAGC GCGGGGACCGGGCCACGGTCAAACACTACGGTGCCTCGAGC < 41bp 0.428928169862601 0.827158256409844 NA NA prediction 0.654316512819688 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034790 chr20:43034788 nonsynonymous SNV 0.796 5 19 hm6Am_associated_SNPs_1455 0 0 1 0 2 HNF4A chr20:43034872 5'GT 43034872 Upstream 85bp
618 chr14 104578278 104578278 1 + G T SARC 104578280 + 104578260 104578300 41 GAGGCAGCCGGGAACCTGGCAGTGGTGGCCTTTCTACAGAG GAGGCAGCCGGGAACCTGTCAGTGGTGGCCTTTCTACAGAG < 41bp 0.551611212679441 0.878729343825335 NA NA prediction 0.654236262291787 Functional Gain - ASPG ENSG00000166183 CDS Human protein_coding chr14:104578280 chr14:104578278 nonsynonymous SNV 0.020 0 19 hm6Am_associated_SNPs_1456 0 0 0 0 2 ASPG chr14:104578257 3'AG 104578257 Downstream 22bp
619 chr14 104578278 104578278 1 + G T SARC 104578280 + 104578260 104578300 41 GAGGCAGCCGGGAACCTGGCAGTGGTGGCCTTTCTACAGAG GAGGCAGCCGGGAACCTGTCAGTGGTGGCCTTTCTACAGAG < 41bp 0.551611212679441 0.878729343825335 NA NA prediction 0.654236262291787 Functional Gain - ASPG ENSG00000166183 CDS Human protein_coding chr14:104578280 chr14:104578278 nonsynonymous SNV 0.020 0 19 hm6Am_associated_SNPs_1456 0 0 0 0 2 ASPG chr14:104578337 5'GT 104578337 Upstream 60bp
620 chr17 48913470 48913470 1 + G T LUAD 48913472 + 48913452 48913492 41 CCCAACCTCTGGGTGGACGCACAGAGCACCTGCAGGCGGGA CCCAACCTCTGGGTGGACTCACAGAGCACCTGCAGGCGGGA < 41bp 0.552845244248128 0.879921200715007 NA NA prediction 0.654151912933758 Functional Gain - WFIKKN2 ENSG00000173714 CDS Human protein_coding chr17:48913472 chr17:48913470 nonsynonymous SNV 0.999 3 19 hm6Am_associated_SNPs_1458 0 0 0 0 1 WFIKKN2 chr17:48913508 5'GT 48913508 Upstream 39bp
621 chr1 55161130 55161130 1 + G T UCEC 55161132 + 55161112 55161152 41 GGAGCGAGGCGACGAGAAGCACAGGATCACGGCCACCGCCT GGAGCGAGGCGACGAGAATCACAGGATCACGGCCACCGCCT < 41bp 0.442783080759925 0.826982216499854 NA NA prediction 0.653964432999709 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55161132 chr1:55161130 nonsynonymous SNV 0.995 1 19 hm6Am_associated_SNPs_1460 0 0 0 0 2 MROH7 chr1:55161049 3'AG 55161049 Downstream 82bp
622 chr1 55161130 55161130 1 + G T UCEC 55161132 + 55161112 55161152 41 GGAGCGAGGCGACGAGAAGCACAGGATCACGGCCACCGCCT GGAGCGAGGCGACGAGAATCACAGGATCACGGCCACCGCCT < 41bp 0.442783080759925 0.826982216499854 NA NA prediction 0.653964432999709 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55161132 chr1:55161130 nonsynonymous SNV 0.995 1 19 hm6Am_associated_SNPs_1460 0 0 0 0 2 MROH7 chr1:55161163 5'GT 55161163 Upstream 34bp
623 chr7 141889252 141889252 1 + G T SARC 141889254 + 141889234 141889274 41 GGACAGCTCCCCCGTGGAGCACTACAACGTGCACAACCTGT GGACAGCTCCCCCGTGGATCACTACAACGTGCACAACCTGT < 41bp 0.560050261796437 0.886928756351156 NA NA prediction 0.653756989109438 Functional Gain - MGAM2 ENSG00000257743 CDS Human protein_coding chr7:141889254 chr7:141889252 nonsynonymous SNV 0.009 0 19 hm6Am_associated_SNPs_1461 0 0 0 0 2 MGAM2 chr7:141889167 3'AG 141889167 Downstream 86bp
624 chr7 141889252 141889252 1 + G T SARC 141889254 + 141889234 141889274 41 GGACAGCTCCCCCGTGGAGCACTACAACGTGCACAACCTGT GGACAGCTCCCCCGTGGATCACTACAACGTGCACAACCTGT < 41bp 0.560050261796437 0.886928756351156 NA NA prediction 0.653756989109438 Functional Gain - MGAM2 ENSG00000257743 CDS Human protein_coding chr7:141889254 chr7:141889252 nonsynonymous SNV 0.009 0 19 hm6Am_associated_SNPs_1461 0 0 0 0 2 MGAM2 chr7:141889305 5'GT 141889305 Upstream 54bp
625 chr5 76326776 76326776 1 + G T HNSC 76326778 + 76326758 76326798 41 TGTACCAGAACGCAGAAAGCAACAACCAGGAGCTCCGCACG TGTACCAGAACGCAGAAATCAACAACCAGGAGCTCCGCACG < 41bp 0.547279455226738 0.874033163425613 NA NA prediction 0.65350741639775 Functional Gain - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76326778 chr5:76326776 nonsynonymous SNV 0.987 4 19 hm6Am_associated_SNPs_1462 0 0 1 0 1 AGGF1 chr5:76326801 5'GT 76326801 Upstream 26bp
626 chr17 37034344 37034344 1 + G T SARC 37034346 + 37034326 37034366 41 TCTCCATCCCCAGTTCTGGCATAAAGCATGCTTCCATTGCG TCTCCATCCCCAGTTCTGTCATAAAGCATGCTTCCATTGCG < 41bp 0.538012631350465 0.864700857682917 NA NA prediction 0.653376452664904 Functional Gain - LASP1 ENSG00000002834 CDS Human protein_coding chr17:37034346 chr17:37034344 nonsynonymous SNV 0.999 3 19 hm6Am_associated_SNPs_1463 0 0 1 0 2 LASP1 chr17:37034339 3'AG 37034339 Downstream 6bp
627 chr17 37034344 37034344 1 + G T SARC 37034346 + 37034326 37034366 41 TCTCCATCCCCAGTTCTGGCATAAAGCATGCTTCCATTGCG TCTCCATCCCCAGTTCTGTCATAAAGCATGCTTCCATTGCG < 41bp 0.538012631350465 0.864700857682917 NA NA prediction 0.653376452664904 Functional Gain - LASP1 ENSG00000002834 CDS Human protein_coding chr17:37034346 chr17:37034344 nonsynonymous SNV 0.999 3 19 hm6Am_associated_SNPs_1463 0 0 1 0 2 LASP1 chr17:37034433 5'GT 37034433 Upstream 90bp
628 chr9 133278261 133278261 1 + G T UCEC 133278263 + 133278243 133278283 41 TGCCGGCGTAGCCCACAAGCACGTCTTCCTCACTGTGCAAG TGCCGGCGTAGCCCACAATCACGTCTTCCTCACTGTGCAAG < 41bp 0.560413945519743 0.886430851197429 NA NA prediction 0.652033811355372 Functional Gain - HMCN2 ENSG00000215428 CDS Human other chr9:133278263 chr9:133278261 nonsynonymous SNV 0.967 2 19 hm6Am_associated_SNPs_1467 0 0 1 0 2 HMCN2 chr9:133278176 3'AG 133278176 Downstream 86bp
629 chr9 133278261 133278261 1 + G T UCEC 133278263 + 133278243 133278283 41 TGCCGGCGTAGCCCACAAGCACGTCTTCCTCACTGTGCAAG TGCCGGCGTAGCCCACAATCACGTCTTCCTCACTGTGCAAG < 41bp 0.560413945519743 0.886430851197429 NA NA prediction 0.652033811355372 Functional Gain - HMCN2 ENSG00000215428 CDS Human other chr9:133278263 chr9:133278261 nonsynonymous SNV 0.967 2 19 hm6Am_associated_SNPs_1467 0 0 1 0 2 HMCN2 chr9:133278283 5'GT 133278283 Upstream 23bp
630 chr15 23811207 23811207 1 + G T UCEC 23811209 + 23811189 23811229 41 TGCCAAGCCGAAGCAGCGGCATTTGGACAAAGCAGATCATC TGCCAAGCCGAAGCAGCGTCATTTGGACAAAGCAGATCATC < 41bp 0.434221151843303 0.825861740262873 NA NA prediction 0.651723480525745 Functional Gain - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811209 chr15:23811207 nonsynonymous SNV 0.100 4 19 hm6Am_associated_SNPs_1470 0 0 1 0 1 MKRN3 chr15:23811234 5'GT 23811234 Upstream 28bp
631 chr2 220505639 220505639 1 + G T LUAD 220505641 + 220505621 220505661 41 GCTCACGGTGCCTCTGAGGCATTGCCTTCTGCCCCGGCTCT GCTCACGGTGCCTCTGAGTCATTGCCTTCTGCCCCGGCTCT < 41bp 0.534236610175878 0.859038237868881 NA NA prediction 0.649603255386006 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505641 chr2:220505639 nonsynonymous SNV 0.999 5 19 hm6Am_associated_SNPs_1473 0 0 0 0 1 SLC4A3 chr2:220505684 5'GT 220505684 Upstream 46bp
632 chr22 32754152 32754152 1 + G C CESC 32754154 + 32754134 32754174 41 CTGGCAGTGGACATGGCTGCACTCTTCCAAGAAGCAAGCAG CTGGCAGTGGACATGGCTCCACTCTTCCAAGAAGCAAGCAG < 41bp 0.501442008734106 0.826085454624324 NA NA prediction 0.649286891780435 Functional Gain - RFPL3 ENSG00000128276 CDS Human protein_coding chr22:32754154 chr22:32754152 nonsynonymous SNV 0.028 1 19 hm6Am_associated_SNPs_1474 0 0 0 0 1 RFPL3 chr22:32754141 3'AG 32754141 Downstream 12bp
633 chrX 70443602 70443602 1 + G T ESCA 70443604 + 70443584 70443624 41 GCTCAGTGGCGTGAACCGGCATTCTACTGCCATTGGCCGAG GCTCAGTGGCGTGAACCGTCATTCTACTGCCATTGGCCGAG < 41bp 0.560455224275096 0.884985203170461 NA NA prediction 0.64905995779073 Functional Gain - GJB1 ENSG00000169562 CDS Human protein_coding chrX:70443604 chrX:70443602 synonymous SNV . 0 19 hm6Am_associated_SNPs_1475 0 0 1 0 1 BCYRN1 chrX:70443542 3'AG 70443542 Downstream 61bp
634 chr19 2334702 2334702 1 + G T LUSC 2334704 + 2334684 2334724 41 GCAGTGGGCCCATCTTCCGCACGACCTCAGCAAGGCAGTGA GCAGTGGGCCCATCTTCCTCACGACCTCAGCAAGGCAGTGA < 41bp 0.445216992183061 0.823820506304175 NA NA prediction 0.647641012608351 Functional Gain - SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2334704 chr19:2334702 . . 0 19 hm6Am_associated_SNPs_1477 0 0 0 0 1 SPPL2B chr19:2334720 5'GT 2334720 Upstream 19bp
635 chr11 66026227 66026227 1 + G T PRAD 66026229 + 66026209 66026249 41 CGAAGCCGAGCCTGGCTCGCAGGAGCGCTGCATCCTCCTGC CGAAGCCGAGCCTGGCTCTCAGGAGCGCTGCATCCTCCTGC < 41bp 0.56534061782345 0.88773497617159 NA NA prediction 0.644788716696279 Functional Gain - KLC2 ENSG00000174996 CDS Human protein_coding chr11:66026229 chr11:66026227 synonymous SNV . 0 19 hm6Am_associated_SNPs_1482 0 0 1 0 1 KLC2 chr11:66026293 5'GT 66026293 Upstream 67bp
636 chr19 12949460 12949460 1 + G T SARC 12949462 + 12949442 12949482 41 GCGGCAGTATGTTCCGCCGCACCAAGAGGTAGACCCCCGAT GCGGCAGTATGTTCCGCCTCACCAAGAGGTAGACCCCCGAT < 41bp 0.437929979310659 0.82195145197158 NA NA prediction 0.64390290394316 Functional Gain - MAST1 ENSG00000105613 CDS Human protein_coding chr19:12949462 chr19:12949460 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_1483 0 0 0 0 1 MAST1 chr19:12949469 5'GT 12949469 Upstream 10bp
637 chr3 9743545 9743545 1 + G T SKCM 9743547 + 9743527 9743567 41 TCTTGGCTGCGTACAGCAGCACAGTGGGGCTTCGGGCAGTA TCTTGGCTGCGTACAGCATCACAGTGGGGCTTCGGGCAGTA < 41bp 0.444552851899223 0.821637204129101 NA NA prediction 0.643274408258203 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9743547 chr3:9743545 nonsynonymous SNV 0.914 3 19 hm6Am_associated_SNPs_1486 0 0 1 0 1 MTMR14 chr3:9743474 3'AG 9743474 Downstream 72bp
638 chr19 46180223 46180223 1 + G T rs200485112 46180225 + 46180205 46180245 41 AGGCCCTCGCTGCCTGCCGCACGGCCCAGATCGTGACCCAG AGGCCCTCGCTGCCTGCCTCACGGCCCAGATCGTGACCCAG < 41bp 0.422260912940526 0.820760425593179 NA NA prediction 0.641520851186357 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46180225 chr19:46180223 nonsynonymous SNV 0.997 3 19 hm6Am_associated_SNPs_1489 0 0 1 0 1 GIPR chr19:46180207 3'AG 46180207 Downstream 17bp
639 chr11 134202038 134202038 1 + G C UCEC 134202040 + 134202020 134202060 41 TGGGCTTCCTGGTGCTCCGCAGGTGAGAGAGAGCTTCGCGC TGGGCTTCCTGGTGCTCCCCAGGTGAGAGAGAGCTTCGCGC < 41bp 0.505472668282472 0.824879716947302 NA NA prediction 0.63881409732966 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134202040 chr11:134202038 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1493 0 0 0 0 1 GLB1L2 chr11:134202041 5'GT 134202041 Upstream 4bp
640 chr4 1978268 1978268 1 + G T OV 1978270 + 1978250 1978290 41 AAAACGAGGCGGCGCAGAGCAAAAGGGGAAGGGAAGAGGCA AAAACGAGGCGGCGCAGATCAAAAGGGGAAGGGAAGAGGCA < 41bp 0.484162620549819 0.818888982485493 NA NA prediction 0.637777964970985 Functional Gain - NSD2 ENSG00000109685 CDS Human protein_coding chr4:1978270 chr4:1978268 nonsynonymous SNV 0.371 1 19 hm6Am_associated_SNPs_1497 0 0 1 0 1 NSD2 chr4:1978202 3'AG 1978202 Downstream 67bp
641 chr11 64889822 64889822 1 + G C LIHC 64889824 + 64889804 64889844 41 GCGTAGCAGGTAAAGATGGCAGCTACCATGTTCCGGGCTAC GCGTAGCAGGTAAAGATGCCAGCTACCATGTTCCGGGCTAC < 41bp 0.51371904952301 0.832594379573514 NA NA prediction 0.637750660101009 Functional Gain - MRPL49 ENSG00000149792 CDS Human protein_coding chr11:64889824 chr11:64889822 nonsynonymous SNV 0.541 3 19 hm6Am_associated_SNPs_1498 0 0 1 1 1 MRPL49 chr11:64889896 5'GT 64889896 Upstream 75bp
642 chr19 42392303 42392303 1 + G T LUAD 42392305 + 42392285 42392325 41 CTGGCCTGGTTCCCGTCAGCATCATCGGGGCTGAGGATGAG CTGGCCTGGTTCCCGTCATCATCATCGGGGCTGAGGATGAG < 41bp 0.562875385365769 0.881548462559485 NA NA prediction 0.637346154387433 Functional Gain - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392305 chr19:42392303 nonsynonymous SNV 0.995 3 19 hm6Am_associated_SNPs_1501 0 0 1 0 2 ARHGEF1 chr19:42392263 3'AG 42392263 Downstream 41bp
643 chr19 42392303 42392303 1 + G T LUAD 42392305 + 42392285 42392325 41 CTGGCCTGGTTCCCGTCAGCATCATCGGGGCTGAGGATGAG CTGGCCTGGTTCCCGTCATCATCATCGGGGCTGAGGATGAG < 41bp 0.562875385365769 0.881548462559485 NA NA prediction 0.637346154387433 Functional Gain - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392305 chr19:42392303 nonsynonymous SNV 0.995 3 19 hm6Am_associated_SNPs_1501 0 0 1 0 2 ARHGEF1 chr19:42392349 5'GT 42392349 Upstream 47bp
644 chr3 13659771 13659771 1 + G T BLCA 13659773 + 13659753 13659793 41 CACTGCAGGACGATGGCCGCACTTGCCGCCCAGGTAAGGGC CACTGCAGGACGATGGCCTCACTTGCCGCCCAGGTAAGGGC < 41bp 0.432661568965195 0.818583217077272 NA NA prediction 0.637166434154545 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13659773 chr3:13659771 nonsynonymous SNV 0.994 1 19 hm6Am_associated_SNPs_1502 0 0 0 0 1 FBLN2 chr3:13659785 5'GT 13659785 Upstream 15bp
645 chr20 13765897 13765897 1 + G C rs139219896 13765899 + 13765879 13765919 41 GAAGAACTGGGCAGCCCGGCAGCCCGAGCCGACCAAATTTG GAAGAACTGGGCAGCCCGCCAGCCCGAGCCGACCAAATTTG < 41bp 0.49517480277772 0.818149254719457 NA NA prediction 0.636298509438914 Functional Gain - NDUFAF5 ENSG00000101247 CDS Human protein_coding chr20:13765899 chr20:13765897 synonymous SNV . 0 19 hm6Am_associated_SNPs_1505 1 0 1 0 1 NDUFAF5 chr20:13765936 5'GT 13765936 Upstream 40bp
646 chr17 32683558 32683558 1 + G T rs3136677 32683560 + 32683540 32683580 41 TTCAACATGAAAGTCTCTGCAGTGCTTCTGTGCCTGCTGCT TTCAACATGAAAGTCTCTTCAGTGCTTCTGTGCCTGCTGCT < 41bp 0.563478129144329 0.881190245023557 NA NA prediction 0.635424231758456 Functional Gain - CCL13 ENSG00000181374 CDS Human protein_coding chr17:32683560 chr17:32683558 nonsynonymous SNV 0.010 0 19 hm6Am_associated_SNPs_1509 0 0 0 0 1 CCL13 chr17:32683621 5'GT 32683621 Upstream 64bp
647 chr14 65197595 65197595 1 + G T CESC 65197597 + 65197577 65197617 41 CCGGCAGGAGCTGCTACAGCACTCGCTGCCCTTGGGCTCCT CCGGCAGGAGCTGCTACATCACTCGCTGCCCTTGGGCTCCT < 41bp 0.415528133113405 0.817278267945269 NA NA prediction 0.634556535890537 Functional Gain - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65197597 chr14:65197595 nonsynonymous SNV 0.998 2 19 hm6Am_associated_SNPs_1510 0 0 0 0 2 PLEKHG3 chr14:65197517 3'AG 65197517 Downstream 79bp
648 chr14 65197595 65197595 1 + G T CESC 65197597 + 65197577 65197617 41 CCGGCAGGAGCTGCTACAGCACTCGCTGCCCTTGGGCTCCT CCGGCAGGAGCTGCTACATCACTCGCTGCCCTTGGGCTCCT < 41bp 0.415528133113405 0.817278267945269 NA NA prediction 0.634556535890537 Functional Gain - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65197597 chr14:65197595 nonsynonymous SNV 0.998 2 19 hm6Am_associated_SNPs_1510 0 0 0 0 2 PLEKHG3 chr14:65197667 5'GT 65197667 Upstream 73bp
649 chr4 66536302 66536302 1 + G T rs567313112 66536304 + 66536284 66536324 41 CCCCGCCCTCTGCTGCTCGCAGCCTCGCCAGTGAGAATCTA CCCCGCCCTCTGCTGCTCTCAGCCTCGCCAGTGAGAATCTA < 41bp 0.562640792046042 0.879884384251535 NA NA prediction 0.634487184410986 Functional Gain - EPHA5-AS1 ENSG00000250846 ncRNA_exonic Human lincRNA chr4:66536304 chr4:66536302 . . 0 19 hm6Am_associated_SNPs_1511 0 0 0 0 1 EPHA5-AS1 chr4:66536391 5'GT 66536391 Upstream 90bp
650 chr19 19606889 19606889 1 + G C LUAD 19606891 + 19606871 19606911 41 GCATTAGGCAACATTCCAGCACAGGGCCACCGCCCCTCCTC GCATTAGGCAACATTCCACCACAGGGCCACCGCCCCTCCTC < 41bp 0.514804474989859 0.832015462139134 NA NA prediction 0.63442197429855 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19606891 chr19:19606889 nonsynonymous SNV 0.932 2 19 hm6Am_associated_SNPs_1512 0 0 1 0 1 GATAD2A chr19:19606861 3'AG 19606861 Downstream 29bp
651 chr11 64136986 64136986 1 + G T BLCA 64136988 + 64136968 64137008 41 GCACATCCGCAAGAAGCGGCACTTCAGCGAGTCGGAAGCAA GCACATCCGCAAGAAGCGTCACTTCAGCGAGTCGGAAGCAA < 41bp 0.567163245394983 0.884322161970147 NA NA prediction 0.634317833150329 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64136988 chr11:64136986 synonymous SNV . 0 19 hm6Am_associated_SNPs_1513 0 0 1 0 1 RPS6KA4 chr11:64136918 3'AG 64136918 Downstream 69bp
652 chr6 33172479 33172479 1 + G T rs138620921 33172481 + 33172461 33172501 41 CAGAACCGACTCCGCTCCGCACTGGCCTTGGTCACAGGTTG CAGAACCGACTCCGCTCCTCACTGGCCTTGGTCACAGGTTG < 41bp 0.421479681914731 0.816612029378103 NA NA prediction 0.633224058756206 Functional Gain - HSD17B8 ENSG00000204228 CDS Human protein_coding chr6:33172481 chr6:33172479 nonsynonymous SNV 0.983 2 19 hm6Am_associated_SNPs_1516 0 0 1 0 1 HSD17B8 chr6:33172497 5'GT 33172497 Upstream 19bp
653 chr11 114113003 114113003 1 + G C CESC 114113005 + 114112985 114113025 41 GCTACATCTGCAGTGAGTGCAACCGCACCTTCCCCAGCCAC GCTACATCTGCAGTGAGTCCAACCGCACCTTCCCCAGCCAC < 41bp 0.493312406712912 0.816009169404123 NA NA prediction 0.632018338808247 Functional Gain - ZBTB16 ENSG00000109906 CDS Human protein_coding chr11:114113005 chr11:114113003 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1521 0 0 0 0 1 ZBTB16 chr11:114113059 5'GT 114113059 Upstream 57bp
654 chr19 50906310 50906310 1 + G T STAD 50906312 + 50906292 50906332 41 CATCCTCCTGCCTCGCAGGCATCTTCCCTGAGCCTGAGCGG CATCCTCCTGCCTCGCAGTCATCTTCCCTGAGCCTGAGCGG < 41bp 0.533075528069463 0.84899255853673 NA NA prediction 0.631834060934533 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906312 chr19:50906310 nonsynonymous SNV 0.954 4 19 hm6Am_associated_SNPs_1522 0 0 1 0 1 POLD1 chr19:50906310 3'AG 50906310 Downstream 1bp
655 chr1 17939651 17939651 1 + G T UCEC 17939653 + 17939633 17939673 41 AGACATGCAGGAGCTGAAGCACAAGTACGATTGTAAGGTAT AGACATGCAGGAGCTGAATCACAAGTACGATTGTAAGGTAT < 41bp 0.457438398060787 0.815789622550255 NA NA prediction 0.631579245100511 Functional Gain - ARHGEF10L ENSG00000074964 CDS Human protein_coding chr1:17939653 chr1:17939651 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_1524 0 0 0 0 2 ARHGEF10L chr1:17939553 3'AG 17939553 Downstream 99bp
656 chr1 17939651 17939651 1 + G T UCEC 17939653 + 17939633 17939673 41 AGACATGCAGGAGCTGAAGCACAAGTACGATTGTAAGGTAT AGACATGCAGGAGCTGAATCACAAGTACGATTGTAAGGTAT < 41bp 0.457438398060787 0.815789622550255 NA NA prediction 0.631579245100511 Functional Gain - ARHGEF10L ENSG00000074964 CDS Human protein_coding chr1:17939653 chr1:17939651 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_1524 0 0 0 0 2 ARHGEF10L chr1:17939669 5'GT 17939669 Upstream 19bp
657 chr21 30407196 30407196 1 + G T COAD 30407198 + 30407178 30407218 41 GGAGCAGCATGCCTTGAAGCACTATCTGACGCCAAGATCTG GGAGCAGCATGCCTTGAATCACTATCTGACGCCAAGATCTG < 41bp 0.426633508386567 0.815262255219095 NA NA prediction 0.63052451043819 Functional Gain - USP16 ENSG00000156256 CDS Human protein_coding chr21:30407198 chr21:30407196 nonsynonymous SNV 0.988 2 19 hm6Am_associated_SNPs_1527 0 0 1 0 2 USP16 chr21:30407158 3'AG 30407158 Downstream 39bp
658 chr21 30407196 30407196 1 + G T COAD 30407198 + 30407178 30407218 41 GGAGCAGCATGCCTTGAAGCACTATCTGACGCCAAGATCTG GGAGCAGCATGCCTTGAATCACTATCTGACGCCAAGATCTG < 41bp 0.426633508386567 0.815262255219095 NA NA prediction 0.63052451043819 Functional Gain - USP16 ENSG00000156256 CDS Human protein_coding chr21:30407198 chr21:30407196 nonsynonymous SNV 0.988 2 19 hm6Am_associated_SNPs_1527 0 0 1 0 2 USP16 chr21:30407261 5'GT 30407261 Upstream 66bp
659 chr10 111970049 111970049 1 + G T rs559084901 111970051 + 111970031 111970071 41 GAGGGGTTTGGAACCTTAGCACCCAAGTCTAAGTCAACTTC GAGGGGTTTGGAACCTTATCACCCAAGTCTAAGTCAACTTC < 41bp 0.566759960588981 0.881867565130144 NA NA prediction 0.630215209082326 Functional Gain - MXI1 ENSG00000119950 UTR5 Human protein_coding chr10:111970051 chr10:111970049 . . 0 19 hm6Am_associated_SNPs_1528 0 0 0 0 1 MXI1 chr10:111970073 5'GT 111970073 Upstream 25bp
660 chr3 190930340 190930340 1 + G T SARC 190930342 + 190930322 190930362 41 ATGCTGGACTGGAGATTGGCAAGTGCACATTTCATCCTGGC ATGCTGGACTGGAGATTGTCAAGTGCACATTTCATCCTGGC < 41bp 0.429190097336625 0.815041932800301 NA NA prediction 0.630083865600603 Functional Gain - OSTN ENSG00000188729 CDS Human protein_coding chr3:190930342 chr3:190930340 nonsynonymous SNV 0.901 0 19 hm6Am_associated_SNPs_1529 0 0 0 0 1 OSTN chr3:190930423 5'GT 190930423 Upstream 84bp
661 chr1 84945122 84945122 1 + G T ESCA 84945124 + 84945104 84945144 41 CCTTTCCGCCAGGCTTTAGCATTTCGGAGATTAAAAACAAA CCTTTCCGCCAGGCTTTATCATTTCGGAGATTAAAAACAAA < 41bp 0.574753686031227 0.888589424617765 NA NA prediction 0.627671477173075 Functional Gain - RPF1 ENSG00000117133 CDS Human protein_coding chr1:84945124 chr1:84945122 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_1536 0 0 1 0 1 RPF1 chr1:84945192 5'GT 84945192 Upstream 71bp
662 chr4 6577072 6577072 1 + G C LUAD 6577074 + 6577054 6577094 41 GGGCTGGGTCTACACTGTGCAGGTAGGTGCCGACCACGCCC GGGCTGGGTCTACACTGTCCAGGTAGGTGCCGACCACGCCC < 41bp 0.49172426476296 0.813408578117685 NA NA prediction 0.626817156235371 Functional Gain - MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6577074 chr4:6577072 synonymous SNV . 0 19 hm6Am_associated_SNPs_1538 0 0 1 0 1 MAN2B2 chr4:6577075 5'GT 6577075 Upstream 4bp
663 chr5 68902961 68902961 1 + G T PRAD 68902963 + 68902943 68902983 41 TACTAAAGGACGGACAGAGCATTTGTTCTTCAGCCACATAC TACTAAAGGACGGACAGATCATTTGTTCTTCAGCCACATAC < 41bp 0.455975724110261 0.813137629625757 NA NA prediction 0.626275259251515 Functional Gain - GTF2H2C;GUSBP3 ENSG00000248477 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:68902963 chr5:68902961 . . 0 19 hm6Am_associated_SNPs_1542 0 0 0 0 1 GTF2H2C;GUSBP3 chr5:68903041 5'GT 68903041 Upstream 81bp
664 chr19 50902116 50902116 1 + G T UCEC 50902118 + 50902098 50902138 41 TGCCCAGCAGGATGGATGGCAAGCGGCGGCCAGGCCCAGGG TGCCCAGCAGGATGGATGTCAAGCGGCGGCCAGGCCCAGGG < 41bp 0.417352945484489 0.813025946039437 NA NA prediction 0.626051892078875 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902118 chr19:50902116 nonsynonymous SNV 0.991 0 19 hm6Am_associated_SNPs_1543 0 0 1 0 1 POLD1 chr19:50902105 3'AG 50902105 Downstream 12bp
665 chr17 79668610 79668610 1 + G T SARC 79668612 + 79668592 79668632 41 CAGGCACAGGGGCCGCCGGCACAGGGCAGCGAGGCCCAGCT CAGGCACAGGGGCCGCCGTCACAGGGCAGCGAGGCCCAGCT < 41bp 0.434712935866151 0.813019878044877 NA NA prediction 0.626039756089753 Functional Gain - HGS ENSG00000185359 CDS Human protein_coding chr17:79668612 chr17:79668610 nonsynonymous SNV 0.014 0 19 hm6Am_associated_SNPs_1544 0 0 1 0 1 HGS chr17:79668538 3'AG 79668538 Downstream 73bp
666 chr10 64415325 64415325 1 + G T LUSC 64415327 + 64415307 64415347 41 GTTGTGCTGAATACACTTGCAGAGTCGTGCTGTGGTCTCTC GTTGTGCTGAATACACTTTCAGAGTCGTGCTGTGGTCTCTC < 41bp 0.42626701208331 0.811978172131847 NA NA prediction 0.623956344263694 Functional Gain - ZNF365 ENSG00000138311 CDS Human protein_coding chr10:64415327 chr10:64415325 nonsynonymous SNV 0.007 3 19 hm6Am_associated_SNPs_1552 0 0 0 0 1 ZNF365 chr10:64415391 5'GT 64415391 Upstream 67bp
667 chr16 675940 675940 1 + G T SKCM 675942 + 675922 675962 41 CTTGGTTGGAAACCGGCTGCACCTGGCCTTCAAGCGGCAGG CTTGGTTGGAAACCGGCTTCACCTGGCCTTCAAGCGGCAGG < 41bp 0.415465240844602 0.811434116909509 NA NA prediction 0.622868233819017 Functional Gain - RAB40C ENSG00000197562 CDS Human protein_coding chr16:675942 chr16:675940 synonymous SNV . 0 19 hm6Am_associated_SNPs_1559 0 0 1 0 1 RAB40C chr16:675899 3'AG 675899 Downstream 42bp
668 chr11 1095149 1095149 1 + G T SARC 1095151 + 1095131 1095171 41 GTGAGGAGGTGTACAACGGCACATACGGAGACACCTGTTAT GTGAGGAGGTGTACAACGTCACATACGGAGACACCTGTTAT < 41bp 0.436531037603225 0.810894078855125 NA NA prediction 0.621788157710249 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1095151 chr11:1095149 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_1561 0 0 0 0 1 MUC2 chr11:1095131 3'AG 1095131 Downstream 19bp
669 chr5 92929327 92929327 1 + G T LUAD 92929329 + 92929309 92929349 41 CAGGAGAAGTCGCAGTGCGCACTGGAGGAGTACGTGAGGAG CAGGAGAAGTCGCAGTGCTCACTGGAGGAGTACGTGAGGAG < 41bp 0.565993366102996 0.876380384603174 NA NA prediction 0.620774037000356 Functional Gain - NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92929329 chr5:92929327 nonsynonymous SNV 0.985 5 19 hm6Am_associated_SNPs_1562 0 0 1 0 1 NR2F1 chr5:92929268 3'AG 92929268 Downstream 60bp
670 chr10 38647260 38647260 1 + G C LUAD 38647262 + 38647242 38647282 41 GCATTGGCCTGGCCCTCTGCAAGCGGCTGCTGGCGGAAGAT GCATTGGCCTGGCCCTCTCCAAGCGGCTGCTGGCGGAAGAT < 41bp 0.520404871363851 0.82976972617227 NA NA prediction 0.618729709616838 Functional Gain - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38647262 chr10:38647260 . . 0 19 hm6Am_associated_SNPs_1569 0 0 0 0 1 HSD17B7P2 chr10:38647240 3'AG 38647240 Downstream 21bp
671 chr6 35265704 35265704 1 + G C SKCM 35265706 + 35265686 35265726 41 TGGACGTGGAGAAGAGTGGCAAAGTCTCCAAGTCCCAGCTC TGGACGTGGAGAAGAGTGCCAAAGTCTCCAAGTCCCAGCTC < 41bp 0.519079992151235 0.828268928002214 NA NA prediction 0.61837787170196 Functional Gain - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35265706 chr6:35265704 nonsynonymous SNV 1.000 5 19 hm6Am_associated_SNPs_1570 0 0 1 0 1 DEF6 chr6:35265729 5'GT 35265729 Upstream 26bp
672 chr3 197687287 197687287 1 + G T LUAD 197687289 + 197687269 197687309 41 CAGTTCCCCTCCCTGCCGGCACCACGTCCCCTCTGACACTG CAGTTCCCCTCCCTGCCGTCACCACGTCCCCTCTGACACTG < 41bp 0.585914154366363 0.895095102513744 NA NA prediction 0.618361896294762 Functional Gain - LMLN ENSG00000185621 CDS Human protein_coding chr3:197687289 chr3:197687287 synonymous SNV . 0 19 hm6Am_associated_SNPs_1571 0 0 0 0 1 LMLN chr3:197687311 5'GT 197687311 Upstream 25bp
673 chr2 61389668 61389668 1 + G T UCEC 61389670 + 61389650 61389690 41 ATGAGCTTTGAAACCACAGCAATCACTTTCTTCATCATCCT ATGAGCTTTGAAACCACATCAATCACTTTCTTCATCATCCT < 41bp 0.426685398137177 0.809104670413826 NA NA prediction 0.618209340827651 Functional Gain - C2orf74 ENSG00000237651 CDS Human protein_coding chr2:61389670 chr2:61389668 nonsynonymous SNV 0.955 2 19 hm6Am_associated_SNPs_1572 0 0 0 0 1 C2orf74 chr2:61389744 5'GT 61389744 Upstream 77bp
674 chr5 52778794 52778794 1 + G T LUAD 52778796 + 52778776 52778816 41 GCAAGGAGGAGTGCTGCAGCACCGGCCGGCTGAGCACCTCG GCAAGGAGGAGTGCTGCATCACCGGCCGGCTGAGCACCTCG < 41bp 0.424227201739911 0.808911018560667 NA NA prediction 0.617822037121335 Functional Gain - FST ENSG00000134363 CDS Human protein_coding chr5:52778796 chr5:52778794 nonsynonymous SNV 0.999 2 19 hm6Am_associated_SNPs_1574 0 0 1 0 1 FST chr5:52778710 3'AG 52778710 Downstream 85bp
675 chr19 15636206 15636206 1 + G C LUAD 15636208 + 15636188 15636228 41 TGGAGAAGACGGCGTTCCGCATATACGCGGTGTCCACCCTT TGGAGAAGACGGCGTTCCCCATATACGCGGTGTCCACCCTT < 41bp 0.472112972566461 0.808697695243358 NA NA prediction 0.617395390486716 Functional Gain - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15636208 chr19:15636206 nonsynonymous SNV 0.024 3 19 hm6Am_associated_SNPs_1578 0 0 0 0 1 CYP4F22 chr19:15636147 3'AG 15636147 Downstream 60bp
676 chr1 84544037 84544037 1 + G T LUSC 84544039 + 84544019 84544059 41 CGGCGACCGCCAAGAAAGGCAGCGAGGTGGAGAGCGGTGAG CGGCGACCGCCAAGAAAGTCAGCGAGGTGGAGAGCGGTGAG < 41bp 0.573139474994778 0.881109199341568 NA NA prediction 0.61593944869358 Functional Gain - PRKACB ENSG00000142875 CDS Human protein_coding chr1:84544039 chr1:84544037 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_1584 0 0 0 0 1 PRKACB chr1:84544054 5'GT 84544054 Upstream 18bp
677 chr1 11848068 11848068 1 + G C rs1537514 11848070 + 11848050 11848090 41 GCCCTGAGCCCAGAGCCTGCAAAGCCCAAAGCAAGGCCCAT GCCCTGAGCCCAGAGCCTCCAAAGCCCAAAGCAAGGCCCAT < 41bp 0.519992696902167 0.827646400982593 NA NA prediction 0.615307408160853 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11848070 chr1:11848068 nonsynonymous SNV 0.003 1 19 hm6Am_associated_SNPs_1586 1 0 0 0 1 C1orf167 chr1:11848104 5'GT 11848104 Upstream 37bp
678 chr20 43545460 43545460 1 + G T LUSC 43545462 + 43545442 43545482 41 TTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACACCAT TTTGAGACCCATGAGGCCTCACAGCAGGCCATCAACACCAT < 41bp 0.581088697440562 0.888358890052226 NA NA prediction 0.614540385223328 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545462 chr20:43545460 nonsynonymous SNV 0.062 4 19 hm6Am_associated_SNPs_1590 0 0 1 1 1 PABPC1L chr20:43545397 3'AG 43545397 Downstream 64bp
679 chr17 80696414 80696414 1 + G T UCEC 80696416 + 80696396 80696436 41 GCCTGGAGGCCCTCAGGAGCACGGGCCTGGTGCGGGTGCCG GCCTGGAGGCCCTCAGGATCACGGGCCTGGTGCGGGTGCCG < 41bp 0.409761489243828 0.807164024539868 NA NA prediction 0.614328049079737 Functional Gain - FN3K ENSG00000167363 CDS Human protein_coding chr17:80696416 chr17:80696414 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_1591 0 0 1 0 1 FN3K chr17:80696365 3'AG 80696365 Downstream 50bp
680 chr1 154242714 154242714 1 + G T LUAD 154242716 + 154242696 154242736 41 CCAGACCAGCTCCATCCCGCAGAAGCCCCAGACCAACAAGT CCAGACCAGCTCCATCCCTCAGAAGCCCCAGACCAACAAGT < 41bp 0.590672849357554 0.897359186804265 NA NA prediction 0.613372674893422 Functional Gain - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154242716 chr1:154242714 synonymous SNV . 0 19 hm6Am_associated_SNPs_1594 0 0 1 0 1 UBAP2L chr1:154242676 3'AG 154242676 Downstream 39bp
681 chr12 111080107 111080107 1 + G T UCEC 111080109 + 111080089 111080129 41 AGCTTACTATTCTTCATAGCACAACTGAGCAAGACTGCTTA AGCTTACTATTCTTCATATCACAACTGAGCAAGACTGCTTA < 41bp 0.41989624281216 0.806525874763719 NA NA prediction 0.613051749527438 Functional Gain - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111080109 chr12:111080107 nonsynonymous SNV 0.672 3 19 hm6Am_associated_SNPs_1595 0 0 1 0 1 TCTN1 chr12:111080194 5'GT 111080194 Upstream 88bp
682 chr16 723035 723035 1 + G C LUAD 723037 + 723017 723057 41 GGCCGAGTTTTGCCGCAAGCACCGGCTACCCGCTCCCGTGC GGCCGAGTTTTGCCGCAACCACCGGCTACCCGCTCCCGTGC < 41bp 0.483929029372367 0.806393526406473 NA NA prediction 0.612787052812946 Functional Gain - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:723037 chr16:723035 nonsynonymous SNV 0.967 2 19 hm6Am_associated_SNPs_1597 0 0 1 0 1 RHOT2 chr16:723130 5'GT 723130 Upstream 96bp
683 chr10 73056384 73056384 1 + G C LUAD 73056386 + 73056366 73056406 41 GCCAGAAGGCCCTCCACTGCACTTTCACCCTGGAGAGGCAC GCCAGAAGGCCCTCCACTCCACTTTCACCCTGGAGAGGCAC < 41bp 0.528265196417781 0.834619702815468 NA NA prediction 0.612709012795375 Functional Gain - UNC5B ENSG00000107731 CDS Human protein_coding chr10:73056386 chr10:73056384 nonsynonymous SNV 0.999 4 19 hm6Am_associated_SNPs_1598 0 0 1 0 1 UNC5B chr10:73056335 3'AG 73056335 Downstream 50bp
684 chr6 1391291 1391291 1 + G C LUAD 1391293 + 1391273 1391313 41 CGGCAGGCCTGCACTCCAGCATGTCCTCCTACTCGCTGGAG CGGCAGGCCTGCACTCCACCATGTCCTCCTACTCGCTGGAG < 41bp 0.515266818563193 0.821467869534468 NA NA prediction 0.61240210194255 Functional Gain - FOXF2 ENSG00000137273 CDS Human protein_coding chr6:1391293 chr6:1391291 nonsynonymous SNV 0.992 2 19 hm6Am_associated_SNPs_1600 0 0 1 0 1 FOXF2 chr6:1391353 5'GT 1391353 Upstream 63bp
685 chr6 33171361 33171361 1 + G T READ 33171363 + 33171343 33171383 41 CAGTAGGGGCACTGGCAGGCACAGCCTGTGCCCTTCTCACT CAGTAGGGGCACTGGCAGTCACAGCCTGTGCCCTTCTCACT < 41bp 0.478055176205947 0.805286264548283 NA NA prediction 0.610572529096566 Functional Gain - SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33171363 chr6:33171361 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1609 0 0 1 0 1 SLC39A7 chr6:33171318 3'AG 33171318 Downstream 44bp
686 chr14 76668066 76668066 1 + G T OV 76668068 + 76668048 76668088 41 GTGGAGCCAACCACACCAGCATCACAAGCCCCCAAATCACC GTGGAGCCAACCACACCATCATCACAAGCCCCCAAATCACC < 41bp 0.406915024219043 0.805042481249409 NA NA prediction 0.610084962498817 Functional Gain - GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76668068 chr14:76668066 nonsynonymous SNV 0.284 0 19 hm6Am_associated_SNPs_1610 0 0 1 1 1 GPATCH2L chr14:76668034 3'AG 76668034 Downstream 33bp
687 chr11 124702864 124702864 1 + G T rs565338693 124702866 + 124702846 124702886 41 TCCCATGCCCTCTCCAGGGCACCACCCTCCAGGCACCTCCA TCCCATGCCCTCTCCAGGTCACCACCCTCCAGGCACCTCCA < 41bp 0.576100731311505 0.880784335652332 NA NA prediction 0.609367208681655 Functional Gain - LOC100507283 ENSG00000245498 ncRNA_exonic Human antisense chr11:124702866 chr11:124702864 . . 0 19 hm6Am_associated_SNPs_1618 0 0 0 0 1 LOC100507283 chr11:124702782 3'AG 124702782 Downstream 83bp
688 chr6 41011724 41011724 1 + G T SARC 41011726 + 41011706 41011746 41 GGGCTGGTGGTGAGCACAGCACTGATCTGGCATCCCATCAA GGGCTGGTGGTGAGCACATCACTGATCTGGCATCCCATCAA < 41bp 0.598046672020849 0.902463654389143 NA NA prediction 0.608833964736589 Functional Gain - TSPO2 ENSG00000112212 CDS Human protein_coding chr6:41011726 chr6:41011724 nonsynonymous SNV 0.138 1 19 hm6Am_associated_SNPs_1619 0 0 0 0 1 TSPO2 chr6:41011679 3'AG 41011679 Downstream 46bp
689 chr10 26505809 26505809 1 + G T LUAD 26505811 + 26505791 26505831 41 GGGATTCCGAGAATCCCGGCACAGGTAGGAAGGAGAACGGG GGGATTCCGAGAATCCCGTCACAGGTAGGAAGGAGAACGGG < 41bp 0.595139849557503 0.898721010567265 NA NA prediction 0.607162322019524 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26505811 chr10:26505809 nonsynonymous SNV 0.995 1 19 hm6Am_associated_SNPs_1623 0 0 0 0 1 GAD2 chr10:26505814 5'GT 26505814 Upstream 6bp
690 chr18 74536349 74536349 1 + G T GBM 74536351 + 74536331 74536371 41 GCTGGAGAGATGTTGGCTGCACCATGACCCAGGTATGCAGA GCTGGAGAGATGTTGGCTTCACCATGACCCAGGTATGCAGA < 41bp 0.418244955472242 0.802734904655482 NA NA prediction 0.605469809310963 Functional Gain - ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74536351 chr18:74536349 synonymous SNV . 0 19 hm6Am_associated_SNPs_1630 0 0 1 0 1 ZNF236 chr18:74536362 5'GT 74536362 Upstream 14bp
691 chr2 242741270 242741270 1 + G T SARC 242741272 + 242741252 242741292 41 CGCACAAGACGGCCAGCAGCACGGTGCTCAACATCCTCTAC CGCACAAGACGGCCAGCATCACGGTGCTCAACATCCTCTAC < 41bp 0.410080827692676 0.801823394503921 NA NA prediction 0.603646789007843 Functional Gain - GAL3ST2 ENSG00000154252 CDS Human protein_coding chr2:242741272 chr2:242741270 nonsynonymous SNV 0.995 4 19 hm6Am_associated_SNPs_1636 0 0 0 0 1 GAL3ST2 chr2:242741196 3'AG 242741196 Downstream 75bp
692 chr6 116432059 116432059 1 + G T LUSC 116432061 + 116432041 116432081 41 CCAGAGGTGCTGGCAGAGGCATATGGCAAGAAAGAGTGGAA CCAGAGGTGCTGGCAGAGTCATATGGCAAGAAAGAGTGGAA < 41bp 0.406730104892755 0.801319345390606 NA NA prediction 0.602638690781211 Functional Gain - NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116432061 chr6:116432059 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_1637 0 0 1 0 2 NT5DC1 chr6:116432013 3'AG 116432013 Downstream 47bp
693 chr6 116432059 116432059 1 + G T LUSC 116432061 + 116432041 116432081 41 CCAGAGGTGCTGGCAGAGGCATATGGCAAGAAAGAGTGGAA CCAGAGGTGCTGGCAGAGTCATATGGCAAGAAAGAGTGGAA < 41bp 0.406730104892755 0.801319345390606 NA NA prediction 0.602638690781211 Functional Gain - NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116432061 chr6:116432059 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_1637 0 0 1 0 2 NT5DC1 chr6:116432119 5'GT 116432119 Upstream 61bp
694 chr20 30818663 30818663 1 + G T LUSC 30818665 + 30818645 30818685 41 GGACGGGACTGCAGGCTCGCACTTCATGGCCTCTCCGCAGT GGACGGGACTGCAGGCTCTCACTTCATGGCCTCTCCGCAGT < 41bp 0.387798781936763 0.80123775478221 NA NA prediction 0.60247550956442 Functional Gain - POFUT1 ENSG00000101346 CDS Human protein_coding chr20:30818665 chr20:30818663 synonymous SNV . 0 19 hm6Am_associated_SNPs_1640 0 0 1 0 1 POFUT1 chr20:30818622 3'AG 30818622 Downstream 42bp
695 chr17 79857882 79857882 1 + G T UCEC 79857884 + 79857864 79857904 41 ATCCTCAAGTGGCTGCACGCACAGCAGGTGCAGCAGCACTG ATCCTCAAGTGGCTGCACTCACAGCAGGTGCAGCAGCACTG < 41bp 0.425570164459361 0.800969853011028 NA NA prediction 0.601939706022055 Functional Gain - ANAPC11 ENSG00000141552 CDS Human protein_coding chr17:79857884 chr17:79857882 nonsynonymous SNV 0.612 0 19 hm6Am_associated_SNPs_1642 0 0 1 0 1 ANAPC11 chr17:79857796 3'AG 79857796 Downstream 87bp
696 chr14 105849753 105849753 1 + G T UCEC 105849755 + 105849735 105849775 41 CGCCGTGGCGGGAGCGCAGCATTACCTCAGTGCCATCCTGC CGCCGTGGCGGGAGCGCATCATTACCTCAGTGCCATCCTGC < 41bp 0.395240511223042 0.800912377244059 NA NA prediction 0.601824754488118 Functional Gain - PACS2 ENSG00000179364 CDS Human protein_coding chr14:105849755 chr14:105849753 nonsynonymous SNV 0.961 3 19 hm6Am_associated_SNPs_1643 0 0 1 0 2 PACS2 chr14:105849696 3'AG 105849696 Downstream 58bp
697 chr14 105849753 105849753 1 + G T UCEC 105849755 + 105849735 105849775 41 CGCCGTGGCGGGAGCGCAGCATTACCTCAGTGCCATCCTGC CGCCGTGGCGGGAGCGCATCATTACCTCAGTGCCATCCTGC < 41bp 0.395240511223042 0.800912377244059 NA NA prediction 0.601824754488118 Functional Gain - PACS2 ENSG00000179364 CDS Human protein_coding chr14:105849755 chr14:105849753 nonsynonymous SNV 0.961 3 19 hm6Am_associated_SNPs_1643 0 0 1 0 2 PACS2 chr14:105849850 5'GT 105849850 Upstream 98bp
698 chr2 136511794 136511794 1 + G T SARC 136511796 + 136511776 136511816 41 ATTCCCTTGGAAGTAATAGCAGGAAGTGTTTCTGCAGATGA ATTCCCTTGGAAGTAATATCAGGAAGTGTTTCTGCAGATGA < 41bp 0.48152398432259 0.800713304010825 NA NA prediction 0.60142660802165 Functional Gain - UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136511796 chr2:136511794 nonsynonymous SNV 0.998 2 19 hm6Am_associated_SNPs_1645 0 0 1 0 2 UBXN4 chr2:136511729 3'AG 136511729 Downstream 66bp
699 chr2 136511794 136511794 1 + G T SARC 136511796 + 136511776 136511816 41 ATTCCCTTGGAAGTAATAGCAGGAAGTGTTTCTGCAGATGA ATTCCCTTGGAAGTAATATCAGGAAGTGTTTCTGCAGATGA < 41bp 0.48152398432259 0.800713304010825 NA NA prediction 0.60142660802165 Functional Gain - UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136511796 chr2:136511794 nonsynonymous SNV 0.998 2 19 hm6Am_associated_SNPs_1645 0 0 1 0 2 UBXN4 chr2:136511847 5'GT 136511847 Upstream 54bp
700 chr11 113264424 113264424 1 + G T UCEC 113264426 + 113264406 113264446 41 CCATGAACTTCCTGCACAGCATTAAGCCGCCTCTGCTCCAC CCATGAACTTCCTGCACATCATTAAGCCGCCTCTGCTCCAC < 41bp 0.394087455046318 0.800515924410154 NA NA prediction 0.601031848820307 Functional Gain - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113264426 chr11:113264424 nonsynonymous SNV 0.974 3 19 hm6Am_associated_SNPs_1647 0 0 0 0 1 ANKK1 chr11:113264497 5'GT 113264497 Upstream 74bp
701 chr11 66136951 66136951 1 - C G KIRC 66136949 - 66136929 66136969 41 GCACAGCCAGGATCCTGAGCACCAACCACACGGGTCCCGAG GCACAGCCAGGATCCTGACCACCAACCACACGGGTCCCGAG < 41bp 0.548678364622458 0.848449134999983 NA NA prediction 0.599541540755049 Functional Gain - SLC29A2 ENSG00000174669 CDS Human protein_coding chr11:66136949 chr11:66136951 nonsynonymous SNV 0.079 0 19 hm6Am_associated_SNPs_1652 0 0 0 0 1 SLC29A2 chr11:66137003 3'AG 66137003 Downstream 53bp
702 chr14 60581524 60581524 1 + G T UCEC 60581526 + 60581506 60581546 41 ACTCTGCCCCCACCCGATGCACTTCTCTTATGGGCAATGGA ACTCTGCCCCCACCCGATTCACTTCTCTTATGGGCAATGGA < 41bp 0.396467191728734 0.799742166000445 NA NA prediction 0.599484332000891 Functional Gain - PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60581526 chr14:60581524 nonsynonymous SNV 0.989 3 19 hm6Am_associated_SNPs_1653 0 0 1 0 1 PCNX4 chr14:60581597 5'GT 60581597 Upstream 74bp
703 chr17 32953939 32953939 1 + G T LUAD 32953941 + 32953921 32953961 41 CAGGAGGACCCTGCAGGAGCACAGGCTGGACAGCAACCTGA CAGGAGGACCCTGCAGGATCACAGGCTGGACAGCAACCTGA < 41bp 0.396240387243091 0.799486121633435 NA NA prediction 0.59897224326687 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32953941 chr17:32953939 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_1656 0 0 0 0 1 TMEM132E chr17:32953874 3'AG 32953874 Downstream 66bp
704 chr1 227954727 227954727 1 + G T LUAD 227954729 + 227954709 227954749 41 CCAGGAGGGCACAGCACTGCACCTGCAGACAAGCCTGCCAG CCAGGAGGGCACAGCACTTCACCTGCAGACAAGCCTGCCAG < 41bp 0.396734471476123 0.79937058170985 NA NA prediction 0.5987411634197 Functional Gain - SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227954729 chr1:227954727 synonymous SNV . 0 19 hm6Am_associated_SNPs_1657 0 0 1 0 2 SNAP47 chr1:227954660 3'AG 227954660 Downstream 68bp
705 chr1 227954727 227954727 1 + G T LUAD 227954729 + 227954709 227954749 41 CCAGGAGGGCACAGCACTGCACCTGCAGACAAGCCTGCCAG CCAGGAGGGCACAGCACTTCACCTGCAGACAAGCCTGCCAG < 41bp 0.396734471476123 0.79937058170985 NA NA prediction 0.5987411634197 Functional Gain - SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227954729 chr1:227954727 synonymous SNV . 0 19 hm6Am_associated_SNPs_1657 0 0 1 0 2 SNAP47 chr1:227954784 5'GT 227954784 Upstream 58bp
706 chr9 135865148 135865148 1 + G T LUAD 135865150 + 135865130 135865170 41 AGCGCAGCTTCGAGTGCCGCATGTGCGGCAAGGCCTTCAAG AGCGCAGCTTCGAGTGCCTCATGTGCGGCAAGGCCTTCAAG < 41bp 0.390889796023089 0.798693422097733 NA NA prediction 0.597386844195466 Functional Gain - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135865150 chr9:135865148 nonsynonymous SNV 0.997 2 19 hm6Am_associated_SNPs_1660 0 0 1 0 1 GFI1B chr9:135865129 3'AG 135865129 Downstream 20bp
707 chr16 1306674 1306674 1 + G T LUAD 1306676 + 1306656 1306696 41 GTGGGTGCTAACCGCGGCGCACTGCGTGGAACCGTGAGTCT GTGGGTGCTAACCGCGGCTCACTGCGTGGAACCGTGAGTCT < 41bp 0.404052269180769 0.798679422115879 NA NA prediction 0.597358844231758 Functional Gain - TPSD1 ENSG00000095917 CDS Human protein_coding chr16:1306676 chr16:1306674 synonymous SNV . 0 19 hm6Am_associated_SNPs_1661 0 0 0 0 1 TPSD1 chr16:1306688 5'GT 1306688 Upstream 15bp
708 chr2 232659000 232659000 1 + G T SARC 232659002 + 232658982 232659022 41 AGAGCCTGCCAGAACTGAGCACAGCTCAGCAGAACAAGCTG AGAGCCTGCCAGAACTGATCACAGCTCAGCAGAACAAGCTG < 41bp 0.396294776201269 0.798376205442448 NA NA prediction 0.596752410884895 Functional Gain - COPS7B ENSG00000144524 CDS Human protein_coding chr2:232659002 chr2:232659000 nonsynonymous SNV 0.988 1 19 hm6Am_associated_SNPs_1662 0 0 1 1 2 COPS7B chr2:232658973 3'AG 232658973 Downstream 28bp
709 chr2 232659000 232659000 1 + G T SARC 232659002 + 232658982 232659022 41 AGAGCCTGCCAGAACTGAGCACAGCTCAGCAGAACAAGCTG AGAGCCTGCCAGAACTGATCACAGCTCAGCAGAACAAGCTG < 41bp 0.396294776201269 0.798376205442448 NA NA prediction 0.596752410884895 Functional Gain - COPS7B ENSG00000144524 CDS Human protein_coding chr2:232659002 chr2:232659000 nonsynonymous SNV 0.988 1 19 hm6Am_associated_SNPs_1662 0 0 1 1 2 COPS7B chr2:232659061 5'GT 232659061 Upstream 62bp
710 chr6 50683257 50683257 1 + G T LUAD 50683259 + 50683239 50683279 41 TGGCTCTCAGTATGGAATGCACCCAGATCAAAGACTCCTGC TGGCTCTCAGTATGGAATTCACCCAGATCAAAGACTCCTGC < 41bp 0.395373798115418 0.798244355237278 NA NA prediction 0.596488710474555 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683259 chr6:50683257 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_1663 0 0 0 1 1 TFAP2D chr6:50683326 5'GT 50683326 Upstream 70bp
711 chr3 52740271 52740271 1 + G T UCEC 52740273 + 52740253 52740293 41 TCAGCCAGCCATGCTGGAGCATCTGAGCTCGCTGCCCACGC TCAGCCAGCCATGCTGGATCATCTGAGCTCGCTGCCCACGC < 41bp 0.601430083902101 0.898702680222489 NA NA prediction 0.594545192640778 Functional Gain - SPCS1 ENSG00000114902 CDS Human protein_coding chr3:52740273 chr3:52740271 nonsynonymous SNV 0.999 0 19 hm6Am_associated_SNPs_1673 0 0 1 0 1 SPCS1 chr3:52740298 5'GT 52740298 Upstream 28bp
712 chr17 48701339 48701339 1 + G T LUAD 48701341 + 48701321 48701361 41 GTCTGGGGTCAGCCGAACGCACTCTCTGCCCAATGACAGCT GTCTGGGGTCAGCCGAACTCACTCTCTGCCCAATGACAGCT < 41bp 0.554992641273265 0.85137278320305 NA NA prediction 0.592760283859569 Functional Gain - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48701341 chr17:48701339 synonymous SNV . 0 19 hm6Am_associated_SNPs_1679 0 0 0 0 2 CACNA1G chr17:48701268 3'AG 48701268 Downstream 72bp
713 chr17 48701339 48701339 1 + G T LUAD 48701341 + 48701321 48701361 41 GTCTGGGGTCAGCCGAACGCACTCTCTGCCCAATGACAGCT GTCTGGGGTCAGCCGAACTCACTCTCTGCCCAATGACAGCT < 41bp 0.554992641273265 0.85137278320305 NA NA prediction 0.592760283859569 Functional Gain - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48701341 chr17:48701339 synonymous SNV . 0 19 hm6Am_associated_SNPs_1679 0 0 0 0 2 CACNA1G chr17:48701436 5'GT 48701436 Upstream 98bp
714 chrX 153695405 153695405 1 + G T LUAD 153695407 + 153695387 153695427 41 GCCCTGTCCCTAGTGGAAGCACTGCCATCACTGTGAGTGGG GCCCTGTCCCTAGTGGAATCACTGCCATCACTGTGAGTGGG < 41bp 0.391814964437472 0.795316907832422 NA NA prediction 0.590633815664844 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153695407 chrX:153695405 nonsynonymous SNV 0.955 2 19 hm6Am_associated_SNPs_1685 0 0 1 0 2 PLXNA3 chrX:153695400 3'AG 153695400 Downstream 6bp
715 chrX 153695405 153695405 1 + G T LUAD 153695407 + 153695387 153695427 41 GCCCTGTCCCTAGTGGAAGCACTGCCATCACTGTGAGTGGG GCCCTGTCCCTAGTGGAATCACTGCCATCACTGTGAGTGGG < 41bp 0.391814964437472 0.795316907832422 NA NA prediction 0.590633815664844 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153695407 chrX:153695405 nonsynonymous SNV 0.955 2 19 hm6Am_associated_SNPs_1685 0 0 1 0 2 PLXNA3 chrX:153695493 5'GT 153695493 Upstream 89bp
716 chr18 14179557 14179557 1 + G C rs142779176 14179559 + 14179539 14179579 41 TGGAGCGCTGTCTGGCGCGCAGGAGCGGAGACCTTGACGCC TGGAGCGCTGTCTGGCGCCCAGGAGCGGAGACCTTGACGCC < 41bp 0.467623988803775 0.793810836023469 NA NA prediction 0.587621672046938 Functional Gain - ANKRD20A5P ENSG00000186481 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr18:14179559 chr18:14179557 . . 0 19 hm6Am_associated_SNPs_1694 0 0 1 0 1 ANKRD20A5P chr18:14179596 5'GT 14179596 Upstream 40bp
717 chr9 32635006 32635006 1 + G C LUSC 32635008 + 32634988 32635028 41 GAGGCCAAAAAGGAAGGGGCAATGATGGAGGGCAAGATGAT GAGGCCAAAAAGGAAGGGCCAATGATGGAGGGCAAGATGAT < 41bp 0.552774120948132 0.846550146553365 NA NA prediction 0.587552051210467 Functional Gain - TAF1L ENSG00000122728 CDS Human protein_coding chr9:32635008 chr9:32635006 nonsynonymous SNV 0.508 1 19 hm6Am_associated_SNPs_1695 0 0 0 0 1 TAF1L chr9:32635053 5'GT 32635053 Upstream 48bp
718 chr11 36614556 36614556 1 + G C LUSC 36614558 + 36614538 36614578 41 TCAAAACTATTTGCTTCTGCACTGAAACAAAATTCTTCAGA TCAAAACTATTTGCTTCTCCACTGAAACAAAATTCTTCAGA < 41bp 0.553467116699235 0.846869736768466 NA NA prediction 0.586805240138464 Functional Gain - RAG2 ENSG00000175097 CDS Human protein_coding chr11:36614558 chr11:36614556 nonsynonymous SNV 0.990 3 19 hm6Am_associated_SNPs_1699 0 0 0 3 1 RAG2 chr11:36614517 3'AG 36614517 Downstream 40bp
719 chr16 67910471 67910471 1 + G T UCEC 67910473 + 67910453 67910493 41 TGGCTAGCAGTGACTCTAGCATTTCAAGCAAGGCCCGGGGA TGGCTAGCAGTGACTCTATCATTTCAAGCAAGGCCCGGGGA < 41bp 0.401869239947905 0.792884933118057 NA NA prediction 0.585769866236114 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67910473 chr16:67910471 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_1706 0 0 1 0 2 EDC4 chr16:67910391 3'AG 67910391 Downstream 81bp
720 chr16 67910471 67910471 1 + G T UCEC 67910473 + 67910453 67910493 41 TGGCTAGCAGTGACTCTAGCATTTCAAGCAAGGCCCGGGGA TGGCTAGCAGTGACTCTATCATTTCAAGCAAGGCCCGGGGA < 41bp 0.401869239947905 0.792884933118057 NA NA prediction 0.585769866236114 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67910473 chr16:67910471 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_1706 0 0 1 0 2 EDC4 chr16:67910502 5'GT 67910502 Upstream 32bp
721 chr19 36276155 36276155 1 + G C LUSC 36276157 + 36276137 36276177 41 AGCTGGAAGACGTTCTTTGCACTGGGCCGGGGCCCCAGTGT AGCTGGAAGACGTTCTTTCCACTGGGCCGGGGCCCCAGTGT < 41bp 0.463021114088005 0.792690098212564 NA NA prediction 0.585380196425128 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36276157 chr19:36276155 nonsynonymous SNV 0.997 3 19 hm6Am_associated_SNPs_1708 0 0 1 0 2 ARHGAP33 chr19:36276091 3'AG 36276091 Downstream 65bp
722 chr19 36276155 36276155 1 + G C LUSC 36276157 + 36276137 36276177 41 AGCTGGAAGACGTTCTTTGCACTGGGCCGGGGCCCCAGTGT AGCTGGAAGACGTTCTTTCCACTGGGCCGGGGCCCCAGTGT < 41bp 0.463021114088005 0.792690098212564 NA NA prediction 0.585380196425128 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36276157 chr19:36276155 nonsynonymous SNV 0.997 3 19 hm6Am_associated_SNPs_1708 0 0 1 0 2 ARHGAP33 chr19:36276236 5'GT 36276236 Upstream 82bp
723 chr15 25431123 25431123 1 + G C rs529434369 25431125 + 25431105 25431145 41 AGTGAGCTCTTCCCCCCAGCAGGCCCCCTGGGATTGACTGG AGTGAGCTCTTCCCCCCACCAGGCCCCCTGGGATTGACTGG < 41bp 0.475266584162202 0.791980598790116 NA NA prediction 0.583961197580232 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25431125 chr15:25431123 . . 0 19 hm6Am_associated_SNPs_1710 0 0 0 0 1 SNHG14 chr15:25431107 3'AG 25431107 Downstream 17bp
724 chr6 10415006 10415006 1 + G C rs654351 10415008 + 10414988 10415028 41 CATCCACGTCCTCTCTCTGCAGCTTCTCCCCCGCGTTCTTC CATCCACGTCCTCTCTCTCCAGCTTCTCCCCCGCGTTCTTC < 41bp 0.560991548334453 0.852571616282167 NA NA prediction 0.583160135895429 Functional Gain - TFAP2A-AS1 ENSG00000229950 ncRNA_exonic Human antisense chr6:10415008 chr6:10415006 . . 0 19 hm6Am_associated_SNPs_1711 0 1 0 0 1 TFAP2A-AS1 chr6:10414914 3'AG 10414914 Downstream 93bp
725 chr6 32825101 32825101 1 + G T rs148307794 32825103 + 32825083 32825123 41 CACGAGCGCATCTACTGTGCACTCTCTGGTTCAGCTGCTGA CACGAGCGCATCTACTGTTCACTCTCTGGTTCAGCTGCTGA < 41bp 0.581949822597611 0.872448064895857 NA NA prediction 0.580996484596492 Functional Gain - PSMB9 ENSG00000240065 CDS Human protein_coding chr6:32825103 chr6:32825101 nonsynonymous SNV 0.898 4 19 hm6Am_associated_SNPs_1717 0 0 0 0 2 PSMB9 chr6:32825040 3'AG 32825040 Downstream 62bp
726 chr6 32825101 32825101 1 + G T rs148307794 32825103 + 32825083 32825123 41 CACGAGCGCATCTACTGTGCACTCTCTGGTTCAGCTGCTGA CACGAGCGCATCTACTGTTCACTCTCTGGTTCAGCTGCTGA < 41bp 0.581949822597611 0.872448064895857 NA NA prediction 0.580996484596492 Functional Gain - PSMB9 ENSG00000240065 CDS Human protein_coding chr6:32825103 chr6:32825101 nonsynonymous SNV 0.898 4 19 hm6Am_associated_SNPs_1717 0 0 0 0 2 PSMB9 chr6:32825171 5'GT 32825171 Upstream 71bp
727 chr1 2489885 2489885 1 + G T BLCA 2489887 + 2489867 2489907 41 TGGCCTAAGCAAGTGTCTGCAGTGCCAAATGTGTGACCCAG TGGCCTAAGCAAGTGTCTTCAGTGCCAAATGTGTGACCCAG < 41bp 0.425792308529842 0.788999294086161 NA NA prediction 0.577998588172322 Functional Gain - TNFRSF14 ENSG00000157873 CDS Human protein_coding chr1:2489887 chr1:2489885 synonymous SNV . 0 19 hm6Am_associated_SNPs_1727 0 0 1 0 1 TNFRSF14 chr1:2489907 5'GT 2489907 Upstream 23bp
728 chr17 38122104 38122104 1 + G T ESCA 38122106 + 38122086 38122126 41 GGGGGGCCCGGTACGTCCGCACCGACTACACGCTGCTGGAT GGGGGGCCCGGTACGTCCTCACCGACTACACGCTGCTGGAT < 41bp 0.367236766944286 0.788847532716599 NA NA prediction 0.577695065433198 Functional Gain - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38122106 chr17:38122104 nonsynonymous SNV 0.928 0 19 hm6Am_associated_SNPs_1730 0 0 0 0 1 GSDMA chr17:38122154 5'GT 38122154 Upstream 51bp
729 chr18 32822382 32822382 1 + G T rs4799374 32822384 + 32822364 32822404 41 GATTACTCACACTCCTTCGCAAGCACAGAACCAGTTGTACT GATTACTCACACTCCTTCTCAAGCACAGAACCAGTTGTACT < 41bp 0.472338376613245 0.787919114210258 NA NA prediction 0.575838228420515 Functional Gain - ZNF397 ENSG00000186812 UTR5 Human protein_coding chr18:32822384 chr18:32822382 . . 0 19 hm6Am_associated_SNPs_1733 0 0 1 0 1 ZNF397 chr18:32822355 3'AG 32822355 Downstream 28bp
730 chr22 29684679 29684679 1 + G C HNSC 29684681 + 29684661 29684701 41 GACCAGGAGAGAACCGGAGCATGAGTGGCCCTGATAACCGG GACCAGGAGAGAACCGGACCATGAGTGGCCCTGATAACCGG < 41bp 0.45759455537654 0.787540496755597 NA NA prediction 0.575080993511194 Functional Gain - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29684681 chr22:29684679 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_1736 0 0 1 0 2 EWSR1 chr22:29684595 3'AG 29684595 Downstream 85bp
731 chr22 29684679 29684679 1 + G C HNSC 29684681 + 29684661 29684701 41 GACCAGGAGAGAACCGGAGCATGAGTGGCCCTGATAACCGG GACCAGGAGAGAACCGGACCATGAGTGGCCCTGATAACCGG < 41bp 0.45759455537654 0.787540496755597 NA NA prediction 0.575080993511194 Functional Gain - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29684681 chr22:29684679 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_1736 0 0 1 0 2 EWSR1 chr22:29684775 5'GT 29684775 Upstream 97bp
732 chr10 121086043 121086043 1 + G T LUSC 121086045 + 121086025 121086065 41 CAGGGGGCGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGG CAGGGGGCGGAGGAAAGCTCAAAGGGAAAAGCAAGAAGTGG < 41bp 0.4007670380057 0.787448111503944 NA NA prediction 0.574896223007888 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121086045 chr10:121086043 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_1738 0 0 1 0 2 GRK5 chr10:121086028 3'AG 121086028 Downstream 16bp
733 chr10 121086043 121086043 1 + G T LUSC 121086045 + 121086025 121086065 41 CAGGGGGCGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGG CAGGGGGCGGAGGAAAGCTCAAAGGGAAAAGCAAGAAGTGG < 41bp 0.4007670380057 0.787448111503944 NA NA prediction 0.574896223007888 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121086045 chr10:121086043 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_1738 0 0 1 0 2 GRK5 chr10:121086123 5'GT 121086123 Upstream 81bp
734 chrX 48661556 48661556 1 + G T SARC 48661558 + 48661538 48661578 41 CTGAACCTTGAGGCTGAAGCACTGGCTGGCACTGGCTTGGT CTGAACCTTGAGGCTGAATCACTGGCTGGCACTGGCTTGGT < 41bp 0.610262618540187 0.897703967082034 NA NA prediction 0.574882697083693 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48661558 chrX:48661556 nonsynonymous SNV 0.004 0 19 hm6Am_associated_SNPs_1739 0 0 1 0 2 HDAC6 chrX:48661535 3'AG 48661535 Downstream 22bp
735 chrX 48661556 48661556 1 + G T SARC 48661558 + 48661538 48661578 41 CTGAACCTTGAGGCTGAAGCACTGGCTGGCACTGGCTTGGT CTGAACCTTGAGGCTGAATCACTGGCTGGCACTGGCTTGGT < 41bp 0.610262618540187 0.897703967082034 NA NA prediction 0.574882697083693 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48661558 chrX:48661556 nonsynonymous SNV 0.004 0 19 hm6Am_associated_SNPs_1739 0 0 1 0 2 HDAC6 chrX:48661623 5'GT 48661623 Upstream 68bp
736 chr2 233321914 233321914 1 + G T LUSC 233321916 + 233321896 233321936 41 AGCACGCCTCGCCAGCCGGCACCTACGCACACACAGTGAAC AGCACGCCTCGCCAGCCGTCACCTACGCACACACAGTGAAC < 41bp 0.3736374406435 0.787196582787352 NA NA prediction 0.574393165574705 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233321916 chr2:233321914 nonsynonymous SNV 0.040 5 19 hm6Am_associated_SNPs_1742 0 0 0 0 1 ALPI chr2:233321860 3'AG 233321860 Downstream 55bp
737 chr10 121662335 121662335 1 + G T rs34157476 121662337 + 121662317 121662357 41 TCTTCAGTGCAGTCACCGGCACAGCAGCAGGTACCTGCCAG TCTTCAGTGCAGTCACCGTCACAGCAGCAGGTACCTGCCAG < 41bp 0.370669992718255 0.786620257624638 NA NA prediction 0.573240515249275 Functional Gain - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121662337 chr10:121662335 nonsynonymous SNV 0.014 0 19 hm6Am_associated_SNPs_1746 0 0 1 0 1 SEC23IP chr10:121662311 3'AG 121662311 Downstream 25bp
738 chr2 241631697 241631697 1 + G T LUSC 241631699 + 241631679 241631719 41 GGCACAGGGGCTGGGCATGCAGGCCGCCTGCACCCTGATGC GGCACAGGGGCTGGGCATTCAGGCCGCCTGCACCCTGATGC < 41bp 0.626677382973404 0.912108008662573 NA NA prediction 0.570861251378336 Functional Gain - AQP12A ENSG00000184945 CDS Human protein_coding chr2:241631699 chr2:241631697 nonsynonymous SNV 0.056 0 19 hm6Am_associated_SNPs_1749 0 0 0 0 1 AQP12A chr2:241631629 3'AG 241631629 Downstream 69bp
739 chr1 200898144 200898144 1 + G C rs16847383 200898146 + 200898126 200898166 41 CACGAGATCAGCATAGAGGCATCAGAGGCGTTGCATTACCT CACGAGATCAGCATAGAGCCATCAGAGGCGTTGCATTACCT < 41bp 0.554373816066054 0.839233018888007 NA NA prediction 0.569718405643906 Functional Gain - MROH3P ENSG00000233217 ncRNA_exonic Human transcribed_unitary_pseudogene chr1:200898146 chr1:200898144 . . 0 19 hm6Am_associated_SNPs_1751 0 0 0 0 1 MROH3P chr1:200898192 5'GT 200898192 Upstream 49bp
740 chr6 109665329 109665329 1 + G T SARC 109665331 + 109665311 109665351 41 AGCAACTGCAGCTCCTTAGCAAAGAGGCTGAGAGGGCTTCT AGCAACTGCAGCTCCTTATCAAAGAGGCTGAGAGGGCTTCT < 41bp 0.414455431360869 0.784845003019949 NA NA prediction 0.569690006039898 Functional Gain - CCDC162P;CD164 ENSG00000203799 ncRNA_exonic Human transcribed_unitary_pseudogene chr6:109665331 chr6:109665329 . . 0 19 hm6Am_associated_SNPs_1752 0 0 0 0 1 CCDC162P;CD164 chr6:109665399 5'GT 109665399 Upstream 71bp
741 chr7 150817090 150817090 1 + G T LIHC 150817092 + 150817072 150817112 41 AGGCCACGAATGGCGGCGGCAGCGCCTTCAGCGACTACTCG AGGCCACGAATGGCGGCGTCAGCGCCTTCAGCGACTACTCG < 41bp 0.375479742873879 0.784795013345633 NA NA prediction 0.569590026691266 Functional Gain - AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150817092 chr7:150817090 nonsynonymous SNV 0.999 0 19 hm6Am_associated_SNPs_1753 0 0 1 0 1 AGAP3 chr7:150817074 3'AG 150817074 Downstream 17bp
742 chr10 45647034 45647034 1 + G C rs115241861 45647036 + 45647016 45647056 41 GTTCACGTCACCATAGGTGCACCGGGTACTTCTTGAGCATT GTTCACGTCACCATAGGTCCACCGGGTACTTCTTGAGCATT < 41bp 0.516063209703467 0.800767502436366 NA NA prediction 0.569408585465797 Functional Gain - RSU1P2 ENSG00000236442;ENSG00000243349 ncRNA_exonic Human other chr10:45647036 chr10:45647034 . . 0 19 hm6Am_associated_SNPs_1755 0 0 0 0 1 RSU1P2 chr10:45647032 3'AG 45647032 Downstream 3bp
743 chr19 53948377 53948377 1 + G C rs535709375 53948379 + 53948359 53948399 41 GAGTAGCTGAGATTACAGGCATGATCCATTGCTCCCAGCCA GAGTAGCTGAGATTACAGCCATGATCCATTGCTCCCAGCCA < 41bp 0.477560968674365 0.784180589529526 NA NA prediction 0.568361179059053 Functional Gain - ZNF761 ENSG00000160336;ENSG00000160336 ncRNA_exonic;splicing Human protein_coding chr19:53948379 chr19:53948377 . . 0 19 hm6Am_associated_SNPs_1759 0 0 0 0 1 ZNF761 chr19:53948472 5'GT 53948472 Upstream 96bp
744 chr1 207881585 207881585 1 + G T KIRP 207881587 + 207881567 207881607 41 GCAATACTGCCCATTGGAGCATGAAGCCACCAATTTGTCAA GCAATACTGCCCATTGGATCATGAAGCCACCAATTTGTCAA < 41bp 0.386899093879595 0.783533321276175 NA NA prediction 0.567066642552349 Functional Gain - CR1L ENSG00000197721 CDS Human protein_coding chr1:207881587 chr1:207881585 nonsynonymous SNV 0.001 1 19 hm6Am_associated_SNPs_1763 0 0 0 0 2 CR1L chr1:207881523 3'AG 207881523 Downstream 63bp
745 chr1 207881585 207881585 1 + G T KIRP 207881587 + 207881567 207881607 41 GCAATACTGCCCATTGGAGCATGAAGCCACCAATTTGTCAA GCAATACTGCCCATTGGATCATGAAGCCACCAATTTGTCAA < 41bp 0.386899093879595 0.783533321276175 NA NA prediction 0.567066642552349 Functional Gain - CR1L ENSG00000197721 CDS Human protein_coding chr1:207881587 chr1:207881585 nonsynonymous SNV 0.001 1 19 hm6Am_associated_SNPs_1763 0 0 0 0 2 CR1L chr1:207881608 5'GT 207881608 Upstream 24bp
746 chr7 150020625 150020625 1 + G T rs534922901 150020627 + 150020607 150020647 41 AGCTTGGCCAGTGGCTCCGCAGGCTGCCGGCTCCACCCCTC AGCTTGGCCAGTGGCTCCTCAGGCTGCCGGCTCCACCCCTC < 41bp 0.394214531042658 0.783419235932143 NA NA prediction 0.566838471864287 Functional Gain - ACTR3C;LRRC61 ENSG00000106526 CDS Human protein_coding chr7:150020627 chr7:150020625 nonsynonymous SNV 0.073 2 19 hm6Am_associated_SNPs_1764 0 0 1 0 1 ACTR3C;LRRC61 chr7:150020649 5'GT 150020649 Upstream 25bp
747 chrX 105421316 105421316 1 + G T rs149705907 105421318 + 105421298 105421338 41 AGTATTGGGGGAGGGGCAGCATTTCAAGAGGCTGCAGCTGA AGTATTGGGGGAGGGGCATCATTTCAAGAGGCTGCAGCTGA < 41bp 0.614229777614406 0.897085889473507 NA NA prediction 0.565712223718202 Functional Gain - MUM1L1 ENSG00000157502 UTR5 Human protein_coding chrX:105421318 chrX:105421316 . . 0 19 hm6Am_associated_SNPs_1766 0 0 0 0 2 MUM1L1 chrX:105421217 3'AG 105421217 Downstream 100bp
748 chrX 105421316 105421316 1 + G T rs149705907 105421318 + 105421298 105421338 41 AGTATTGGGGGAGGGGCAGCATTTCAAGAGGCTGCAGCTGA AGTATTGGGGGAGGGGCATCATTTCAAGAGGCTGCAGCTGA < 41bp 0.614229777614406 0.897085889473507 NA NA prediction 0.565712223718202 Functional Gain - MUM1L1 ENSG00000157502 UTR5 Human protein_coding chrX:105421318 chrX:105421316 . . 0 19 hm6Am_associated_SNPs_1766 0 0 0 0 2 MUM1L1 chrX:105421352 5'GT 105421352 Upstream 37bp
749 chr10 88466300 88466300 1 + G C UCEC 88466302 + 88466282 88466322 41 CATCAGCACCCCTATTGAGCATGCGCCGGTGTGCACCAGCC CATCAGCACCCCTATTGACCATGCGCCGGTGTGCACCAGCC < 41bp 0.451580211903133 0.782815033408576 NA NA prediction 0.565630066817151 Functional Gain - LDB3 ENSG00000122367 CDS Human protein_coding chr10:88466302 chr10:88466300 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_1767 0 0 0 0 1 LDB3 chr10:88466288 3'AG 88466288 Downstream 13bp
750 chrX 17710490 17710490 1 + G T LGG 17710492 + 17710472 17710512 41 GATCGCCGAGAGCAAAGAGCAGCTGCCCCCCTTTCCATTGC GATCGCCGAGAGCAAAGATCAGCTGCCCCCCTTTCCATTGC < 41bp 0.514487398909984 0.797256939127991 NA NA prediction 0.565539080436015 Functional Gain - NHS ENSG00000188158 CDS Human protein_coding chrX:17710492 chrX:17710490 nonsynonymous SNV 0.968 0 19 hm6Am_associated_SNPs_1768 0 0 0 0 2 NHS chrX:17710455 3'AG 17710455 Downstream 36bp
751 chrX 17710490 17710490 1 + G T LGG 17710492 + 17710472 17710512 41 GATCGCCGAGAGCAAAGAGCAGCTGCCCCCCTTTCCATTGC GATCGCCGAGAGCAAAGATCAGCTGCCCCCCTTTCCATTGC < 41bp 0.514487398909984 0.797256939127991 NA NA prediction 0.565539080436015 Functional Gain - NHS ENSG00000188158 CDS Human protein_coding chrX:17710492 chrX:17710490 nonsynonymous SNV 0.968 0 19 hm6Am_associated_SNPs_1768 0 0 0 0 2 NHS chrX:17710588 5'GT 17710588 Upstream 99bp
752 chr1 11838848 11838848 1 + G C rs6697244 11838850 + 11838830 11838870 41 TGGAGCCACTGAGCAGCAGCACACTCCAAGACTCTCTGGAG TGGAGCCACTGAGCAGCACCACACTCCAAGACTCTCTGGAG < 41bp 0.582985885718094 0.865699757266272 NA NA prediction 0.565427743096357 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11838850 chr1:11838848 nonsynonymous SNV 0.010 0 19 hm6Am_associated_SNPs_1769 0 0 0 0 1 C1orf167 chr1:11838873 5'GT 11838873 Upstream 26bp
753 chr17 56276965 56276965 1 + G T UCEC 56276967 + 56276947 56276987 41 GGCCAGGAGAACCCTGGGGCACTACAGGGGGTACTGCTCCA GGCCAGGAGAACCCTGGGTCACTACAGGGGGTACTGCTCCA < 41bp 0.360467296543549 0.782281450573781 NA NA prediction 0.564562901147561 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56276967 chr17:56276965 synonymous SNV . 0 19 hm6Am_associated_SNPs_1771 0 0 0 0 1 EPX chr17:56276900 3'AG 56276900 Downstream 66bp
754 chr22 20929514 20929514 1 + G T UCEC 20929516 + 20929496 20929536 41 TTGGGCAGACAGCCCATGGCACAGGTATTTACGGGGCAGCG TTGGGCAGACAGCCCATGTCACAGGTATTTACGGGGCAGCG < 41bp 0.619162545608968 0.900595694062306 NA NA prediction 0.562866296906677 Functional Gain - MED15 ENSG00000099917 CDS Human protein_coding chr22:20929516 chr22:20929514 nonsynonymous SNV 0.699 1 19 hm6Am_associated_SNPs_1773 0 0 1 0 1 MED15 chr22:20929519 5'GT 20929519 Upstream 6bp
755 chr9 33798033 33798033 1 + G T UCEC 33798035 + 33798015 33798055 41 CCACCCCTCCAGCTGCTGGCACTGAGTGCCTCATCTCCGGC CCACCCCTCCAGCTGCTGTCACTGAGTGCCTCATCTCCGGC < 41bp 0.365360264993923 0.781207604760793 NA NA prediction 0.562415209521586 Functional Gain - PRSS3 ENSG00000010438 CDS Human protein_coding chr9:33798035 chr9:33798033 nonsynonymous SNV 0.002 5 19 hm6Am_associated_SNPs_1775 0 0 0 0 1 PRSS3 chr9:33798080 5'GT 33798080 Upstream 48bp
756 chr12 133196281 133196281 1 + G T PAAD 133196283 + 133196263 133196303 41 AGGGGGGCAGCGTGTTCAGCATCATCACCAGGGTCGAGGCC AGGGGGGCAGCGTGTTCATCATCATCACCAGGGTCGAGGCC < 41bp 0.368357982259778 0.780999330633587 NA NA prediction 0.561998661267175 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133196283 chr12:133196281 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_1777 0 0 0 0 2 P2RX2 chr12:133196265 3'AG 133196265 Downstream 17bp
757 chr12 133196281 133196281 1 + G T PAAD 133196283 + 133196263 133196303 41 AGGGGGGCAGCGTGTTCAGCATCATCACCAGGGTCGAGGCC AGGGGGGCAGCGTGTTCATCATCATCACCAGGGTCGAGGCC < 41bp 0.368357982259778 0.780999330633587 NA NA prediction 0.561998661267175 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133196283 chr12:133196281 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_1777 0 0 0 0 2 P2RX2 chr12:133196336 5'GT 133196336 Upstream 56bp
758 chr16 3040354 3040354 1 + G T UCEC 3040356 + 3040336 3040376 41 ACTAAGAATGGCTATGGAGCAGGTAGAGATGGGAGTGGGGG ACTAAGAATGGCTATGGATCAGGTAGAGATGGGAGTGGGGG < 41bp 0.444923379424937 0.780377951641768 NA NA prediction 0.560755903283536 Functional Gain - LINC00514 ENSG00000262152 ncRNA_exonic Human processed_transcript chr16:3040356 chr16:3040354 . . 0 19 hm6Am_associated_SNPs_1781 0 0 0 0 1 LINC00514 chr16:3040357 5'GT 3040357 Upstream 4bp
759 chr4 8584282 8584282 1 + G T GBM 8584284 + 8584264 8584304 41 GCAGCGCTGCCTCATCCAGCAGAAGCGGCGCCGCCACCGCG GCAGCGCTGCCTCATCCATCAGAAGCGGCGCCGCCACCGCG < 41bp 0.356366357315585 0.78014975877997 NA NA prediction 0.560299517559939 Functional Gain - GPR78 ENSG00000155269 CDS Human protein_coding chr4:8584284 chr4:8584282 nonsynonymous SNV 0.161 2 19 hm6Am_associated_SNPs_1782 0 0 0 0 1 GPR78 chr4:8584371 5'GT 8584371 Upstream 90bp
760 chr19 50189881 50189881 1 + G T LUAD 50189883 + 50189863 50189903 41 CCCCGAGTCCCCGTACACGCACTGGAAGCAGACGGTGTTCT CCCCGAGTCCCCGTACACTCACTGGAAGCAGACGGTGTTCT < 41bp 0.365528398224756 0.780144624127669 NA NA prediction 0.560289248255338 Functional Gain - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50189883 chr19:50189881 synonymous SNV . 0 19 hm6Am_associated_SNPs_1783 0 0 1 0 1 PRMT1 chr19:50189862 3'AG 50189862 Downstream 20bp
761 chr6 7229268 7229268 1 + G T PAAD 7229270 + 7229250 7229290 41 GCGGAGGTGCATCAGCGAGCAACACCGTTTTGTCTGCGACA GCGGAGGTGCATCAGCGATCAACACCGTTTTGTCTGCGACA < 41bp 0.392792668966233 0.779912181184385 NA NA prediction 0.559824362368771 Functional Gain - RREB1 ENSG00000124782 CDS Human protein_coding chr6:7229270 chr6:7229268 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_1788 0 0 1 0 1 RREB1 chr6:7229230 3'AG 7229230 Downstream 39bp
762 chr10 111988002 111988002 1 + G T CESC 111988004 + 111987984 111988024 41 GCCGAGCCCCCGACTGCAGCATTCAAAGCCCCCACGGAGGT GCCGAGCCCCCGACTGCATCATTCAAAGCCCCCACGGAGGT < 41bp 0.640912874450699 0.920466770104576 NA NA prediction 0.559107791307755 Functional Gain - MXI1 ENSG00000119950 CDS Human protein_coding chr10:111988004 chr10:111988002 nonsynonymous SNV 0.999 2 19 hm6Am_associated_SNPs_1789 0 0 1 0 1 MXI1 chr10:111988079 5'GT 111988079 Upstream 78bp
763 chr16 57490444 57490444 1 + G T SARC 57490446 + 57490426 57490466 41 TCTCCAGTGCAGCAGCCAGCATGTTCGGGAAGGATGGCAGT TCTCCAGTGCAGCAGCCATCATGTTCGGGAAGGATGGCAGT < 41bp 0.372565310957552 0.779347998464694 NA NA prediction 0.558695996929389 Functional Gain - COQ9 ENSG00000088682 CDS Human protein_coding chr16:57490446 chr16:57490444 nonsynonymous SNV 0.985 3 19 hm6Am_associated_SNPs_1792 0 0 1 0 2 COQ9 chr16:57490416 3'AG 57490416 Downstream 29bp
764 chr16 57490444 57490444 1 + G T SARC 57490446 + 57490426 57490466 41 TCTCCAGTGCAGCAGCCAGCATGTTCGGGAAGGATGGCAGT TCTCCAGTGCAGCAGCCATCATGTTCGGGAAGGATGGCAGT < 41bp 0.372565310957552 0.779347998464694 NA NA prediction 0.558695996929389 Functional Gain - COQ9 ENSG00000088682 CDS Human protein_coding chr16:57490446 chr16:57490444 nonsynonymous SNV 0.985 3 19 hm6Am_associated_SNPs_1792 0 0 1 0 2 COQ9 chr16:57490538 5'GT 57490538 Upstream 95bp
765 chr5 7878151 7878151 1 + G T STAD 7878153 + 7878133 7878173 41 CAAGAGGAGATAAGTGGCGCACTCCCGGTGGCATCACCTGC CAAGAGGAGATAAGTGGCTCACTCCCGGTGGCATCACCTGC < 41bp 0.372849732386165 0.778217293289747 NA NA prediction 0.556434586579493 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7878153 chr5:7878151 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_1797 0 0 1 0 1 MTRR chr5:7878057 3'AG 7878057 Downstream 95bp
766 chrX 48651670 48651670 1 + G T UCEC 48651672 + 48651652 48651692 41 CCAGTGGGGATCCCGTGTGCAATGCCTGCGGCCTCTACTAC CCAGTGGGGATCCCGTGTTCAATGCCTGCGGCCTCTACTAC < 41bp 0.364774020636356 0.778052634576632 NA NA prediction 0.556105269153264 Functional Gain - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48651672 chrX:48651670 nonsynonymous SNV 0.929 5 19 hm6Am_associated_SNPs_1801 0 0 0 0 2 GATA1 chrX:48651579 3'AG 48651579 Downstream 92bp
767 chrX 48651670 48651670 1 + G T UCEC 48651672 + 48651652 48651692 41 CCAGTGGGGATCCCGTGTGCAATGCCTGCGGCCTCTACTAC CCAGTGGGGATCCCGTGTTCAATGCCTGCGGCCTCTACTAC < 41bp 0.364774020636356 0.778052634576632 NA NA prediction 0.556105269153264 Functional Gain - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48651672 chrX:48651670 nonsynonymous SNV 0.929 5 19 hm6Am_associated_SNPs_1801 0 0 0 0 2 GATA1 chrX:48651704 5'GT 48651704 Upstream 35bp
768 chr15 89647134 89647134 1 + G T rs146020115 89647136 + 89647116 89647156 41 ATCCCTTTTTCATTTCAGGCACAGATGAATCCTTCATATTT ATCCCTTTTTCATTTCAGTCACAGATGAATCCTTCATATTT < 41bp 0.537024990689723 0.813952681195407 NA NA prediction 0.553855381011369 Functional Gain - ABHD2 ENSG00000140526 UTR5 Human protein_coding chr15:89647136 chr15:89647134 . . 0 19 hm6Am_associated_SNPs_1812 0 0 0 0 1 ABHD2 chr15:89647134 3'AG 89647134 Downstream 1bp
769 chr9 139994219 139994219 1 + G T UCEC 139994221 + 139994201 139994241 41 AAAGGATACCGCAAGTTTGCATGGGGCCATGACGAGCTGAA AAAGGATACCGCAAGTTTTCATGGGGCCATGACGAGCTGAA < 41bp 0.371248564306441 0.776789617669947 NA NA prediction 0.553579235339893 Functional Gain - MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:139994221 chr9:139994219 nonsynonymous SNV 0.047 3 19 hm6Am_associated_SNPs_1815 0 0 1 0 1 MAN1B1 chr9:139994148 3'AG 139994148 Downstream 72bp
770 chr2 71891415 71891415 1 + G C LUAD 71891417 + 71891397 71891437 41 GGATGTTCGAGCTGACCTGCACTCTGCCTCTGGAGAAGGAC GGATGTTCGAGCTGACCTCCACTCTGCCTCTGGAGAAGGAC < 41bp 0.48865911596146 0.776756006588086 NA NA prediction 0.553512013176171 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71891417 chr2:71891415 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1816 0 0 0 0 1 DYSF chr2:71891398 3'AG 71891398 Downstream 18bp
771 chr16 66600453 66600453 1 + G T COAD 66600455 + 66600435 66600475 41 AAACCTGAGTCATCCGAGGCACCTTCAGGGAACTTGAAACA AAACCTGAGTCATCCGAGTCACCTTCAGGGAACTTGAAACA < 41bp 0.388070914335146 0.775329588304483 NA NA prediction 0.550659176608965 Functional Gain - CMTM1 ENSG00000089505 CDS Human protein_coding chr16:66600455 chr16:66600453 nonsynonymous SNV 0.003 0 19 hm6Am_associated_SNPs_1825 0 0 1 0 1 CMTM1 chr16:66600515 5'GT 66600515 Upstream 63bp
772 chr2 135705377 135705377 1 + G T ESCA 135705379 + 135705359 135705399 41 TATGCATTCATTTGGCTTGCAAATGGTCCAATTGGGAGATC TATGCATTCATTTGGCTTTCAAATGGTCCAATTGGGAGATC < 41bp 0.568779233854849 0.844077188767003 NA NA prediction 0.550595909824307 Functional Gain - CCNT2 ENSG00000082258 CDS Human protein_coding chr2:135705379 chr2:135705377 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1826 0 0 1 0 2 CCNT2 chr2:135705306 3'AG 135705306 Downstream 72bp
773 chr2 135705377 135705377 1 + G T ESCA 135705379 + 135705359 135705399 41 TATGCATTCATTTGGCTTGCAAATGGTCCAATTGGGAGATC TATGCATTCATTTGGCTTTCAAATGGTCCAATTGGGAGATC < 41bp 0.568779233854849 0.844077188767003 NA NA prediction 0.550595909824307 Functional Gain - CCNT2 ENSG00000082258 CDS Human protein_coding chr2:135705379 chr2:135705377 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1826 0 0 1 0 2 CCNT2 chr2:135705469 5'GT 135705469 Upstream 93bp
774 chr7 40174644 40174644 1 + G T LUAD 40174646 + 40174626 40174666 41 GCGACGCTGGCGAGGGTGGCAGCTCTGCGCAGAACCTGCCT GCGACGCTGGCGAGGGTGTCAGCTCTGCGCAGAACCTGCCT < 41bp 0.597194210499714 0.871897054656591 NA NA prediction 0.549405688313755 Functional Gain - SUGCT ENSG00000175600 CDS Human protein_coding chr7:40174646 chr7:40174644 nonsynonymous SNV 0.850 0 19 hm6Am_associated_SNPs_1829 0 0 1 0 1 SUGCT chr7:40174719 5'GT 40174719 Upstream 76bp
775 chr16 1797085 1797085 1 + G T SARC 1797087 + 1797067 1797107 41 CGGCGGCCGCCACACCCAGCACCACAGGCACCAAGTCCAAC CGGCGGCCGCCACACCCATCACCACAGGCACCAAGTCCAAC < 41bp 0.357839363245209 0.774325360999338 NA NA prediction 0.548650721998676 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1797087 chr16:1797085 nonsynonymous SNV 0.917 5 19 hm6Am_associated_SNPs_1830 0 0 1 0 1 MAPK8IP3 chr16:1797030 3'AG 1797030 Downstream 56bp
776 chr6 47631198 47631198 1 + G C rs1963994 47631200 + 47631180 47631220 41 CCTGACCTCGTGATCTGCGCACCTCGGCCTCCCAAAGTGCT CCTGACCTCGTGATCTGCCCACCTCGGCCTCCCAAAGTGCT < 41bp 0.548106271627905 0.822387364107702 NA NA prediction 0.548562184959594 Functional Gain - ADGRF2 ENSG00000164393 UTR5 Human protein_coding chr6:47631200 chr6:47631198 . . 0 19 hm6Am_associated_SNPs_1831 0 0 0 0 1 ADGRF2 chr6:47631137 3'AG 47631137 Downstream 62bp
777 chr10 38647242 38647242 1 + G T SARC 38647244 + 38647224 38647264 41 TGAATTGTCCTCCCAGTGGCATTGGCCTGGCCCTCTGCAAG TGAATTGTCCTCCCAGTGTCATTGGCCTGGCCCTCTGCAAG < 41bp 0.6375858877293 0.91178212674801 NA NA prediction 0.54839247803742 Functional Gain - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38647244 chr10:38647242 . . 0 19 hm6Am_associated_SNPs_1833 0 0 0 0 1 HSD17B7P2 chr10:38647240 3'AG 38647240 Downstream 3bp
778 chr17 6350861 6350861 1 + G T COAD 6350863 + 6350843 6350883 41 AGGAGGCGGAAGAGAGGAGCACAGAAGGGCAGTGGATCCCC AGGAGGCGGAAGAGAGGATCACAGAAGGGCAGTGGATCCCC < 41bp 0.358402923837495 0.774125996402165 NA NA prediction 0.548251992804329 Functional Gain - PIMREG ENSG00000129195 CDS Human protein_coding chr17:6350863 chr17:6350861 nonsynonymous SNV 0.004 0 19 hm6Am_associated_SNPs_1836 0 0 0 1 1 PIMREG chr17:6350783 3'AG 6350783 Downstream 79bp
779 chr7 148863259 148863259 1 + G T LUSC 148863261 + 148863241 148863281 41 TAATTTTAGGTGCCTGTGGCATTTGATGATGTCTCCATCTA TAATTTTAGGTGCCTGTGTCATTTGATGATGTCTCCATCTA < 41bp 0.48946033159612 0.773272548566966 NA NA prediction 0.546545097133932 Functional Gain - ZNF398 ENSG00000197024 CDS Human protein_coding chr7:148863261 chr7:148863259 nonsynonymous SNV 0.997 1 19 hm6Am_associated_SNPs_1840 0 0 0 0 1 ZNF398 chr7:148863250 3'AG 148863250 Downstream 10bp
780 chr11 94038882 94038882 1 + G C STAD 94038884 + 94038864 94038904 41 ACGAGCTGCTCAACATCTGCATGAATGCCAAACACCACAAG ACGAGCTGCTCAACATCTCCATGAATGCCAAACACCACAAG < 41bp 0.601027776584337 0.874219533206463 NA NA prediction 0.546383513244253 Functional Gain - IZUMO1R ENSG00000183560 CDS Human protein_coding chr11:94038884 chr11:94038882 nonsynonymous SNV 0.769 5 19 hm6Am_associated_SNPs_1842 0 0 0 0 1 IZUMO1R chr11:94038940 5'GT 94038940 Upstream 59bp
781 chr14 75469779 75469779 1 + G C LIHC 75469781 + 75469761 75469801 41 AGCGGGGTGGTGGGCCGCGCAGCTCCGAGGAAATGGCTCGG AGCGGGGTGGTGGGCCGCCCAGCTCCGAGGAAATGGCTCGG < 41bp 0.419969827428684 0.773181737211203 NA NA prediction 0.546363474422405 Functional Gain - EIF2B2 ENSG00000119718 CDS Human protein_coding chr14:75469781 chr14:75469779 nonsynonymous SNV 0.498 2 19 hm6Am_associated_SNPs_1843 0 0 1 0 1 EIF2B2 chr14:75469856 5'GT 75469856 Upstream 78bp
782 chr22 35804507 35804507 1 + G T HNSC 35804509 + 35804489 35804529 41 CTGCAGGAGCTGCCTGATGCAGTCCCCCACGGGGAGATGCC CTGCAGGAGCTGCCTGATTCAGTCCCCCACGGGGAGATGCC < 41bp 0.646374272618206 0.919084372569957 NA NA prediction 0.545420199903501 Functional Gain - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35804509 chr22:35804507 nonsynonymous SNV 0.980 1 19 hm6Am_associated_SNPs_1847 0 0 1 1 1 MCM5 chr22:35804556 5'GT 35804556 Upstream 50bp
783 chr1 161681071 161681071 1 + G C HNSC 161681073 + 161681053 161681093 41 TCTGCGCTGCCAGGCCTGGCAAGACTGGCCACTGACTCAGG TCTGCGCTGCCAGGCCTGCCAAGACTGGCCACTGACTCAGG < 41bp 0.52007051632426 0.792274329020325 NA NA prediction 0.544407625392131 Functional Gain - FCRLA ENSG00000132185 CDS Human protein_coding chr1:161681073 chr1:161681071 nonsynonymous SNV 0.998 4 19 hm6Am_associated_SNPs_1848 0 0 1 0 1 FCRLA chr1:161680998 3'AG 161680998 Downstream 74bp
784 chr19 4233165 4233165 1 + G T UCEC 4233167 + 4233147 4233187 41 CCACAGCTGGCCCTGCCTGCAGCAGACGCCAACGTCCACCA CCACAGCTGGCCCTGCCTTCAGCAGACGCCAACGTCCACCA < 41bp 0.356306976450433 0.772133813778874 NA NA prediction 0.544267627557748 Functional Gain - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4233167 chr19:4233165 synonymous SNV . 0 19 hm6Am_associated_SNPs_1849 0 0 0 0 1 EBI3 chr19:4233126 3'AG 4233126 Downstream 40bp
785 chr12 46246594 46246594 1 + G C LUAD 46246596 + 46246576 46246616 41 CAGCAGGAGCAGATCCAAGCACTGTAGCTAAAGTAGCAATA CAGCAGGAGCAGATCCAACCACTGTAGCTAAAGTAGCAATA < 41bp 0.454829031718054 0.771862660319049 NA NA prediction 0.543725320638098 Functional Gain - ARID2 ENSG00000189079 CDS Human protein_coding chr12:46246596 chr12:46246594 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1850 0 0 1 0 1 ARID2 chr12:46246679 5'GT 46246679 Upstream 86bp
786 chr7 89797168 89797168 1 + G T COAD 89797170 + 89797150 89797190 41 TGGAATCTGAGACTGCTGGCAAGATGGCCGACTAGGAACAG TGGAATCTGAGACTGCTGTCAAGATGGCCGACTAGGAACAG < 41bp 0.390997259520566 0.77181673406533 NA NA prediction 0.543633468130661 Functional Gain - STEAP2-AS1 ENSG00000227646 ncRNA_intronic Human processed_transcript chr7:89797170 chr7:89797168 . . 0 19 hm6Am_associated_SNPs_1852 0 0 0 0 1 STEAP2-AS1 chr7:89797227 5'GT 89797227 Upstream 60bp
787 chr12 69743957 69743957 1 + G T UCEC 69743959 + 69743939 69743979 41 ACAATGCTGGAGACAGAAGCACTGATTATGGGATATTTCAG ACAATGCTGGAGACAGAATCACTGATTATGGGATATTTCAG < 41bp 0.356300201300586 0.771540390770025 NA NA prediction 0.543080781540051 Functional Gain - LYZ ENSG00000090382 CDS Human protein_coding chr12:69743959 chr12:69743957 nonsynonymous SNV 0.811 4 19 hm6Am_associated_SNPs_1853 0 0 1 0 2 LYZ chr12:69743888 3'AG 69743888 Downstream 70bp
788 chr12 69743957 69743957 1 + G T UCEC 69743959 + 69743939 69743979 41 ACAATGCTGGAGACAGAAGCACTGATTATGGGATATTTCAG ACAATGCTGGAGACAGAATCACTGATTATGGGATATTTCAG < 41bp 0.356300201300586 0.771540390770025 NA NA prediction 0.543080781540051 Functional Gain - LYZ ENSG00000090382 CDS Human protein_coding chr12:69743959 chr12:69743957 nonsynonymous SNV 0.811 4 19 hm6Am_associated_SNPs_1853 0 0 1 0 2 LYZ chr12:69744052 5'GT 69744052 Upstream 96bp
789 chr5 71627179 71627179 1 + G T COAD 71627181 + 71627161 71627201 41 TTGGATCTCGAGGAATCTGCAGTGGAGCTCATGAAAGACCA TTGGATCTCGAGGAATCTTCAGTGGAGCTCATGAAAGACCA < 41bp 0.503470207183906 0.774995368108628 NA NA prediction 0.543050321849445 Functional Gain - PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71627181 chr5:71627179 nonsynonymous SNV 0.408 4 19 hm6Am_associated_SNPs_1854 0 0 1 0 2 PTCD2 chr5:71627085 3'AG 71627085 Downstream 95bp
790 chr5 71627179 71627179 1 + G T COAD 71627181 + 71627161 71627201 41 TTGGATCTCGAGGAATCTGCAGTGGAGCTCATGAAAGACCA TTGGATCTCGAGGAATCTTCAGTGGAGCTCATGAAAGACCA < 41bp 0.503470207183906 0.774995368108628 NA NA prediction 0.543050321849445 Functional Gain - PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71627181 chr5:71627179 nonsynonymous SNV 0.408 4 19 hm6Am_associated_SNPs_1854 0 0 1 0 2 PTCD2 chr5:71627202 5'GT 71627202 Upstream 24bp
791 chr3 99463810 99463810 1 + G T rs13080329 99463812 + 99463792 99463832 41 CAGAGGTGTCACAGGAAGGCACCAGCAAGGACATTGGTCTT CAGAGGTGTCACAGGAAGTCACCAGCAAGGACATTGGTCTT < 41bp 0.574702692685746 0.845698738880819 NA NA prediction 0.541992092390146 Functional Gain - MIR548G ENSG00000144810 UTR5 Human protein_coding chr3:99463812 chr3:99463810 . . 0 19 hm6Am_associated_SNPs_1858 0 0 1 0 1 MIR548G chr3:99463865 5'GT 99463865 Upstream 56bp
792 chr1 48688507 48688507 1 + G C CESC 48688509 + 48688489 48688529 41 GGACTCCAGAGTTGGTCTGCACGCCTACGACATCAGCGTGG GGACTCCAGAGTTGGTCTCCACGCCTACGACATCAGCGTGG < 41bp 0.609581447268782 0.880274730242285 NA NA prediction 0.541386565947007 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48688509 chr1:48688507 synonymous SNV . 0 19 hm6Am_associated_SNPs_1862 0 0 0 0 1 SLC5A9 chr1:48688570 5'GT 48688570 Upstream 64bp
793 chr7 89749159 89749159 1 + G T UCEC 89749161 + 89749141 89749181 41 AGGCGTGGTGGTTCCCCAGCAGAACCACTTTGGACTTCGGT AGGCGTGGTGGTTCCCCATCAGAACCACTTTGGACTTCGGT < 41bp 0.642996633374771 0.913492933648302 NA NA prediction 0.540992600547063 Functional Gain - DPY19L2P4 ENSG00000235436 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:89749161 chr7:89749159 . . 0 19 hm6Am_associated_SNPs_1865 0 0 0 0 1 DPY19L2P4 chr7:89749179 5'GT 89749179 Upstream 21bp
794 chr12 106751995 106751995 1 + G C rs547033135 106751997 + 106751977 106752017 41 AGGGTTGGAGCTCTTCCAGCATAGGTGTGCGTGGGGAGGAC AGGGTTGGAGCTCTTCCACCATAGGTGTGCGTGGGGAGGAC < 41bp 0.419344680976267 0.770482530721717 NA NA prediction 0.540965061443435 Functional Gain - POLR3B ENSG00000013503 UTR5 Human protein_coding chr12:106751997 chr12:106751995 . . 0 19 hm6Am_associated_SNPs_1866 0 0 0 0 1 POLR3B chr12:106752000 5'GT 106752000 Upstream 6bp
795 chr17 61565990 61565990 1 + G C rs4341 61565992 + 61565972 61566012 41 TAAGGGCTGGAGCTCAAGGCATTCAAACCCCTACCAGATCT TAAGGGCTGGAGCTCAAGCCATTCAAACCCCTACCAGATCT < 41bp 0.593633148778409 0.864090481365004 NA NA prediction 0.54091466517319 Functional Gain - ACE ENSG00000159640 UTR3 Human protein_coding chr17:61565992 chr17:61565990 . . 0 19 hm6Am_associated_SNPs_1867 1 0 0 0 1 ACE chr17:61565931 3'AG 61565931 Downstream 60bp
796 chr6 30228270 30228270 1 + G C OV 30228272 + 30228252 30228292 41 AGCGGCTCAGATCTCCCAGCACAAGTGGGAAGCGGACAAAT AGCGGCTCAGATCTCCCACCACAAGTGGGAAGCGGACAAAT < 41bp 0.478619703804911 0.770104752484697 NA NA prediction 0.540209504969393 Functional Gain - HLA-L ENSG00000243753 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:30228272 chr6:30228270 . . 0 19 hm6Am_associated_SNPs_1872 0 0 0 0 1 HLA-L chr6:30228174 3'AG 30228174 Downstream 97bp
797 chr11 582025 582025 1 + G T COAD 582027 + 582007 582047 41 ACAGCGAGCATGGAGATGGCACAGACGGAGAAGACGAGGGG ACAGCGAGCATGGAGATGTCACAGACGGAGAAGACGAGGGG < 41bp 0.358754648440985 0.76985231745143 NA NA prediction 0.53970463490286 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:582027 chr11:582025 nonsynonymous SNV 0.004 1 19 hm6Am_associated_SNPs_1875 0 0 1 0 3 PHRF1 chr11:581962 3'AG 581962 Downstream 64bp
798 chr11 582025 582025 1 + G T COAD 582027 + 582007 582047 41 ACAGCGAGCATGGAGATGGCACAGACGGAGAAGACGAGGGG ACAGCGAGCATGGAGATGTCACAGACGGAGAAGACGAGGGG < 41bp 0.358754648440985 0.76985231745143 NA NA prediction 0.53970463490286 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:582027 chr11:582025 nonsynonymous SNV 0.004 1 19 hm6Am_associated_SNPs_1875 0 0 1 0 3 PHRF1 chr11:581965 3'AG 581965 Downstream 61bp
799 chr11 582025 582025 1 + G T COAD 582027 + 582007 582047 41 ACAGCGAGCATGGAGATGGCACAGACGGAGAAGACGAGGGG ACAGCGAGCATGGAGATGTCACAGACGGAGAAGACGAGGGG < 41bp 0.358754648440985 0.76985231745143 NA NA prediction 0.53970463490286 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:582027 chr11:582025 nonsynonymous SNV 0.004 1 19 hm6Am_associated_SNPs_1875 0 0 1 0 3 PHRF1 chr11:582081 5'GT 582081 Upstream 57bp
800 chr1 231299717 231299717 1 + G T UCEC 231299719 + 231299699 231299739 41 GGAGGGCCGGCACGCCAAGCACGAGGTGAAGCCGCTGGGGG GGAGGGCCGGCACGCCAATCACGAGGTGAAGCCGCTGGGGG < 41bp 0.34763778468748 0.769602358502562 NA NA prediction 0.539204717005124 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231299719 chr1:231299717 nonsynonymous SNV 0.997 0 19 hm6Am_associated_SNPs_1876 0 0 0 0 1 TRIM67 chr1:231299759 5'GT 231299759 Upstream 43bp
801 chr4 144116924 144116924 1 + G T SARC 144116926 + 144116906 144116946 41 GTGGATACATGGGTAATTGCACTCCTGAAAGGACTGGCAGC GTGGATACATGGGTAATTTCACTCCTGAAAGGACTGGCAGC < 41bp 0.357834841025115 0.769598263461607 NA NA prediction 0.539196526923214 Functional Gain - USP38 ENSG00000170185 CDS Human protein_coding chr4:144116926 chr4:144116924 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_1877 0 0 1 0 2 USP38 chr4:144116869 3'AG 144116869 Downstream 56bp
802 chr4 144116924 144116924 1 + G T SARC 144116926 + 144116906 144116946 41 GTGGATACATGGGTAATTGCACTCCTGAAAGGACTGGCAGC GTGGATACATGGGTAATTTCACTCCTGAAAGGACTGGCAGC < 41bp 0.357834841025115 0.769598263461607 NA NA prediction 0.539196526923214 Functional Gain - USP38 ENSG00000170185 CDS Human protein_coding chr4:144116926 chr4:144116924 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_1877 0 0 1 0 2 USP38 chr4:144116998 5'GT 144116998 Upstream 75bp
803 chr2 202134247 202134247 1 + G T LUSC 202134249 + 202134229 202134269 41 GAAGGTTCCACTTCTGCCGCATGAGCTGGGCTGAAGCAAAC GAAGGTTCCACTTCTGCCTCATGAGCTGGGCTGAAGCAAAC < 41bp 0.415248403783813 0.769174757859521 NA NA prediction 0.538349515719043 Functional Gain - CASP8 ENSG00000064012 CDS Human protein_coding chr2:202134249 chr2:202134247 nonsynonymous SNV 0.002 2 19 hm6Am_associated_SNPs_1880 0 0 0 0 1 CASP8 chr2:202134233 3'AG 202134233 Downstream 15bp
804 chr19 33623282 33623282 1 + G T rs566175077 33623284 + 33623264 33623304 41 GGACAGGGAACCACCACCGCATCTGTTGCCTGAGAAGCACC GGACAGGGAACCACCACCTCATCTGTTGCCTGAGAAGCACC < 41bp 0.350143088499168 0.768701733584181 NA NA prediction 0.537403467168361 Functional Gain - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33623284 chr19:33623282 synonymous SNV . 0 19 hm6Am_associated_SNPs_1883 0 0 0 0 1 WDR88 chr19:33623351 5'GT 33623351 Upstream 70bp
805 chr20 56993350 56993350 1 + G T CESC 56993352 + 56993332 56993372 41 TTTAAGGTGAAGACTACAGCACCACGTAGGTACTGTGTGAG TTTAAGGTGAAGACTACATCACCACGTAGGTACTGTGTGAG < 41bp 0.355734535903955 0.768499481982231 NA NA prediction 0.536998963964462 Functional Gain - VAPB ENSG00000124164 CDS Human protein_coding chr20:56993352 chr20:56993350 nonsynonymous SNV 0.987 3 19 hm6Am_associated_SNPs_1884 0 0 1 1 2 VAPB chr20:56993267 3'AG 56993267 Downstream 84bp
806 chr20 56993350 56993350 1 + G T CESC 56993352 + 56993332 56993372 41 TTTAAGGTGAAGACTACAGCACCACGTAGGTACTGTGTGAG TTTAAGGTGAAGACTACATCACCACGTAGGTACTGTGTGAG < 41bp 0.355734535903955 0.768499481982231 NA NA prediction 0.536998963964462 Functional Gain - VAPB ENSG00000124164 CDS Human protein_coding chr20:56993352 chr20:56993350 nonsynonymous SNV 0.987 3 19 hm6Am_associated_SNPs_1884 0 0 1 1 2 VAPB chr20:56993419 5'GT 56993419 Upstream 70bp
807 chr4 8602926 8602926 1 + G T LUSC 8602928 + 8602908 8602948 41 CTTCCCCAACCTGCTTCAGCACCGGTCATGGGAGGTGGTGG CTTCCCCAACCTGCTTCATCACCGGTCATGGGAGGTGGTGG < 41bp 0.349319669096149 0.767857338791214 NA NA prediction 0.535714677582428 Functional Gain - CPZ ENSG00000109625 CDS Human protein_coding chr4:8602928 chr4:8602926 nonsynonymous SNV 0.494 1 19 hm6Am_associated_SNPs_1890 0 0 1 0 1 CPZ chr4:8602850 3'AG 8602850 Downstream 77bp
808 chr12 53668603 53668603 1 + G T SARC 53668605 + 53668585 53668625 41 CCCTTTCTCTGGTCAGTTGCACAGGTGCTTCCGGCTACAAG CCCTTTCTCTGGTCAGTTTCACAGGTGCTTCCGGCTACAAG < 41bp 0.493201713489442 0.767803195147696 NA NA prediction 0.535606390295392 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53668605 chr12:53668603 nonsynonymous SNV 0.999 4 19 hm6Am_associated_SNPs_1891 0 0 1 0 1 ESPL1 chr12:53668601 3'AG 53668601 Downstream 3bp
809 chr3 100287758 100287758 1 + G T LUSC 100287760 + 100287740 100287780 41 CACCATATGCTTTTGTTGGCATTATGCAGTAACCATTGTCA CACCATATGCTTTTGTTGTCATTATGCAGTAACCATTGTCA < 41bp 0.636524005471396 0.904218002972217 NA NA prediction 0.535387995001641 Functional Gain - TMEM45A ENSG00000181458 CDS Human protein_coding chr3:100287760 chr3:100287758 nonsynonymous SNV 0.998 2 19 hm6Am_associated_SNPs_1894 0 0 0 0 1 TMEM45A chr3:100287811 5'GT 100287811 Upstream 54bp
810 chr7 132959842 132959842 1 + G T COAD 132959844 + 132959824 132959864 41 GGATGAATTGATTGTACAGCACTACACAGAATTGACGACAG GGATGAATTGATTGTACATCACTACACAGAATTGACGACAG < 41bp 0.469147128922197 0.767582022251967 NA NA prediction 0.535164044503934 Functional Gain - EXOC4 ENSG00000131558 CDS Human protein_coding chr7:132959844 chr7:132959842 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1896 0 0 1 0 1 EXOC4 chr7:132959926 5'GT 132959926 Upstream 85bp
811 chr11 71507110 71507110 1 - C A rs76695292 71507108 - 71507088 71507128 41 GGCAGGCAGCCAGCCTCCGCAGGACCCCGACCAGCGACACG GGCAGGCAGCCAGCCTCCTCAGGACCCCGACCAGCGACACG < 41bp 0.344030461338934 0.767358369997784 NA NA prediction 0.534716739995567 Functional Gain - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71507108 chr11:71507110 stopgain 0.002 0 19 hm6Am_associated_SNPs_1899 0 0 0 0 1 FAM86C1 chr11:71507171 3'AG 71507171 Downstream 62bp
812 chr20 30497691 30497691 1 + G C OV 30497693 + 30497673 30497713 41 TGTTTGTAGAGGAGTTTCGCAAAAACCCAGGAATCACCTGG TGTTTGTAGAGGAGTTTCCCAAAAACCCAGGAATCACCTGG < 41bp 0.425036066361428 0.767347533569987 NA NA prediction 0.534695067139974 Functional Gain - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30497693 chr20:30497691 nonsynonymous SNV 0.998 3 19 hm6Am_associated_SNPs_1900 0 0 0 2 1 TTLL9 chr20:30497725 5'GT 30497725 Upstream 35bp
813 chr14 100166397 100166397 1 + G T LUAD 100166399 + 100166379 100166419 41 ATGCAACTATGAGCGCTGGCACAAGCAGCGGAGAGTCATAG ATGCAACTATGAGCGCTGTCACAAGCAGCGGAGAGTCATAG < 41bp 0.343187154779702 0.76696588247261 NA NA prediction 0.53393176494522 Functional Gain - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100166399 chr14:100166397 nonsynonymous SNV 0.998 3 19 hm6Am_associated_SNPs_1905 0 0 0 0 2 CYP46A1 chr14:100166352 3'AG 100166352 Downstream 46bp
814 chr14 100166397 100166397 1 + G T LUAD 100166399 + 100166379 100166419 41 ATGCAACTATGAGCGCTGGCACAAGCAGCGGAGAGTCATAG ATGCAACTATGAGCGCTGTCACAAGCAGCGGAGAGTCATAG < 41bp 0.343187154779702 0.76696588247261 NA NA prediction 0.53393176494522 Functional Gain - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100166399 chr14:100166397 nonsynonymous SNV 0.998 3 19 hm6Am_associated_SNPs_1905 0 0 0 0 2 CYP46A1 chr14:100166438 5'GT 100166438 Upstream 42bp
815 chrX 36298722 36298722 1 + G T SARC 36298724 + 36298704 36298744 41 CAATAACAGAACAATCTAGCATTTTGGATGATGCAGACACA CAATAACAGAACAATCTATCATTTTGGATGATGCAGACACA < 41bp 0.525981671124239 0.792819820409487 NA NA prediction 0.533676298570495 Functional Gain - CFAP47 ENSG00000205081 CDS Human other chrX:36298724 chrX:36298722 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_1907 0 0 0 0 1 CFAP47 chrX:36298745 5'GT 36298745 Upstream 24bp
816 chr6 36867379 36867379 1 + G T THYM 36867381 + 36867361 36867401 41 ACCTCAGAGACCCCCCCCGCAGTATCCTCTCCTTATAGTTG ACCTCAGAGACCCCCCCCTCAGTATCCTCTCCTTATAGTTG < 41bp 0.566918329092289 0.833696420980069 NA NA prediction 0.533556183775561 Functional Gain - C6orf89 ENSG00000198663 CDS Human protein_coding chr6:36867381 chr6:36867379 synonymous SNV . 0 19 hm6Am_associated_SNPs_1909 0 0 1 0 1 C6orf89 chr6:36867409 5'GT 36867409 Upstream 31bp
817 chr3 184052538 184052538 1 + G T LUAD 184052540 + 184052520 184052560 41 CTGCGGATGTTCTTTGACGCACTGTATGACGAGGACGTGGT CTGCGGATGTTCTTTGACTCACTGTATGACGAGGACGTGGT < 41bp 0.393577590398209 0.766668863716678 NA NA prediction 0.533337727433356 Functional Gain - EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184052540 chr3:184052538 nonsynonymous SNV 0.128 2 19 hm6Am_associated_SNPs_1911 0 0 1 0 1 EIF4G1 chr3:184052515 3'AG 184052515 Downstream 24bp
818 chr10 118404587 118404587 1 + G C LUAD 118404589 + 118404569 118404609 41 TGTGGAAGAAAACGTCTTGCAATCTCTTTACCCTTGTTAAA TGTGGAAGAAAACGTCTTCCAATCTCTTTACCCTTGTTAAA < 41bp 0.592341343269841 0.858697255756205 NA NA prediction 0.532711824972728 Functional Gain - PNLIPRP2 ENSG00000165862 CDS Human other chr10:118404589 chr10:118404587 nonsynonymous SNV 0.979 0 19 hm6Am_associated_SNPs_1912 0 0 0 0 1 PNLIPRP2 chr10:118404545 3'AG 118404545 Downstream 43bp
819 chr2 220473425 220473425 1 + G T BRCA 220473427 + 220473407 220473447 41 TGGAACTCCAAGCAGCTCGCACCTTGGAGCGACTGGAGCTC TGGAACTCCAAGCAGCTCTCACCTTGGAGCGACTGGAGCTC < 41bp 0.357604574613973 0.766127176579071 NA NA prediction 0.532254353158141 Functional Gain - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220473427 chr2:220473425 nonsynonymous SNV 0.536 2 19 hm6Am_associated_SNPs_1913 0 0 0 0 1 STK11IP chr2:220473510 5'GT 220473510 Upstream 86bp
820 chr12 121125273 121125273 1 + G T HNSC 121125275 + 121125255 121125295 41 CAACGCGGGTGGAGAGGCGCATGTGGACGTGCACGGGATCC CAACGCGGGTGGAGAGGCTCATGTGGACGTGCACGGGATCC < 41bp 0.654169358069924 0.919921340474096 NA NA prediction 0.531503964808345 Functional Gain - MLEC ENSG00000110917 CDS Human protein_coding chr12:121125275 chr12:121125273 synonymous SNV . 0 19 hm6Am_associated_SNPs_1917 0 0 1 0 1 MLEC chr12:121125334 5'GT 121125334 Upstream 62bp
821 chr11 63273978 63273978 1 + G T SARC 63273980 + 63273960 63274000 41 TCCTGACAGCTTCATTCTGCAACCACCAGTCTTCCACCCGG TCCTGACAGCTTCATTCTTCAACCACCAGTCTTCCACCCGG < 41bp 0.346098237369984 0.765332234435776 NA NA prediction 0.530664468871552 Functional Gain - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63273980 chr11:63273978 synonymous SNV . 0 19 hm6Am_associated_SNPs_1921 0 0 0 0 1 LGALS12 chr11:63273999 5'GT 63273999 Upstream 22bp
822 chr21 42769609 42769609 1 + G T LUAD 42769611 + 42769591 42769631 41 TACCACTGAACTCATCATGCATATCCAAGTGAGCCACGTGG TACCACTGAACTCATCATTCATATCCAAGTGAGCCACGTGG < 41bp 0.354192669118924 0.764788872155999 NA NA prediction 0.529577744311999 Functional Gain - MX2 ENSG00000183486 CDS Human protein_coding chr21:42769611 chr21:42769609 nonsynonymous SNV 0.003 0 19 hm6Am_associated_SNPs_1924 0 0 0 0 1 MX2 chr21:42769618 5'GT 42769618 Upstream 10bp
823 chrX 47426050 47426050 1 + G T UCEC 47426052 + 47426032 47426072 41 TGGCAGCCCCCGCACCCAGCACTGTGACCCGGAGCACTTCC TGGCAGCCCCCGCACCCATCACTGTGACCCGGAGCACTTCC < 41bp 0.659758876651919 0.924401963925028 NA NA prediction 0.529286174546219 Functional Gain - ARAF ENSG00000078061 CDS Human protein_coding chrX:47426052 chrX:47426050 nonsynonymous SNV 0.493 0 19 hm6Am_associated_SNPs_1927 0 0 1 0 1 ARAF chrX:47426038 3'AG 47426038 Downstream 13bp
824 chrX 134483083 134483083 1 + G T LUSC 134483085 + 134483065 134483105 41 CTGGCACCAGTGGGAACGGCACACATACCACCAACCATGCA CTGGCACCAGTGGGAACGTCACACATACCACCAACCATGCA < 41bp 0.350588688007503 0.764577272305745 NA NA prediction 0.529154544611491 Functional Gain - ZNF449 ENSG00000173275 CDS Human protein_coding chrX:134483085 chrX:134483083 nonsynonymous SNV 0.921 0 19 hm6Am_associated_SNPs_1928 0 0 1 0 1 ZNF449 chrX:134483035 3'AG 134483035 Downstream 49bp
825 chr4 110786357 110786357 1 + G T SARC 110786359 + 110786339 110786379 41 GATGAGAAAACAGGCTCAGCAAGGTTGCATCACCCAGGTCA GATGAGAAAACAGGCTCATCAAGGTTGCATCACCCAGGTCA < 41bp 0.507013312675414 0.771290065768044 NA NA prediction 0.528553506185262 Functional Gain - LRIT3 ENSG00000183423 UTR5 Human protein_coding chr4:110786359 chr4:110786357 . . 0 19 hm6Am_associated_SNPs_1930 0 0 0 0 2 LRIT3 chr4:110786275 3'AG 110786275 Downstream 83bp
826 chr4 110786357 110786357 1 + G T SARC 110786359 + 110786339 110786379 41 GATGAGAAAACAGGCTCAGCAAGGTTGCATCACCCAGGTCA GATGAGAAAACAGGCTCATCAAGGTTGCATCACCCAGGTCA < 41bp 0.507013312675414 0.771290065768044 NA NA prediction 0.528553506185262 Functional Gain - LRIT3 ENSG00000183423 UTR5 Human protein_coding chr4:110786359 chr4:110786357 . . 0 19 hm6Am_associated_SNPs_1930 0 0 0 0 2 LRIT3 chr4:110786431 5'GT 110786431 Upstream 75bp
827 chr8 39771445 39771445 1 + G T UCEC 39771447 + 39771427 39771467 41 GAGCAGACTACAAGAATGGCACACGCTATGGAAAACTCCTG GAGCAGACTACAAGAATGTCACACGCTATGGAAAACTCCTG < 41bp 0.356521649649611 0.763971359955011 NA NA prediction 0.527942719910022 Functional Gain - IDO1 ENSG00000131203 CDS Human protein_coding chr8:39771447 chr8:39771445 nonsynonymous SNV 0.042 0 19 hm6Am_associated_SNPs_1931 0 0 0 0 1 IDO1 chr8:39771528 5'GT 39771528 Upstream 84bp
828 chr11 36616260 36616260 1 + G C rs558269729 36616262 + 36616242 36616282 41 CGCCCGGAGCGGTGTCGGGCAAACCGCTACCCTGGTATTGC CGCCCGGAGCGGTGTCGGCCAAACCGCTACCCTGGTATTGC < 41bp 0.530502133133544 0.794405423817795 NA NA prediction 0.527806581368501 Functional Gain - C11orf74 ENSG00000166352;ENSG00000175097 UTR5 Human protein_coding chr11:36616262 chr11:36616260 . . 0 19 hm6Am_associated_SNPs_1932 0 0 1 0 1 C11orf74 chr11:36616311 5'GT 36616311 Upstream 52bp
829 chr19 39138465 39138465 1 + G T LUAD 39138467 + 39138447 39138487 41 GCGCTGGCGGCGGGGGCAGCATGGGCGACTACATGGCCCAG GCGCTGGCGGCGGGGGCATCATGGGCGACTACATGGCCCAG < 41bp 0.656539222420612 0.920241640791021 NA NA prediction 0.527404836740818 Functional Gain - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39138467 chr19:39138465 nonsynonymous SNV 0.969 0 19 hm6Am_associated_SNPs_1934 0 0 1 0 1 ACTN4 chr19:39138547 5'GT 39138547 Upstream 83bp
830 chr22 20295420 20295420 1 + G T rs4425183 20295422 + 20295402 20295442 41 CAGGAGCGAGCCTGTGCAGCAGAGATCGGATATGAGGACCC CAGGAGCGAGCCTGTGCATCAGAGATCGGATATGAGGACCC < 41bp 0.646885272472485 0.910583995435982 NA NA prediction 0.527397445926995 Functional Gain - RTN4R;DGCR6L ENSG00000161132 ncRNA_exonic Human unprocessed_pseudogene chr22:20295422 chr22:20295420 . . 0 19 hm6Am_associated_SNPs_1935 0 0 0 0 1 RTN4R;DGCR6L chr22:20295484 5'GT 20295484 Upstream 65bp
831 chr12 93788401 93788401 1 + G T UCEC 93788403 + 93788383 93788423 41 AGGTGCTGCTGGTGAGTAGCAGCCGGTACCCAGACCAGTGG AGGTGCTGCTGGTGAGTATCAGCCGGTACCCAGACCAGTGG < 41bp 0.559242816837678 0.821780518029401 NA NA prediction 0.525075402383447 Functional Gain - NUDT4 ENSG00000173598 CDS Human protein_coding chr12:93788403 chr12:93788401 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1943 0 0 1 0 2 NUDT4 chr12:93788385 3'AG 93788385 Downstream 17bp
832 chr12 93788401 93788401 1 + G T UCEC 93788403 + 93788383 93788423 41 AGGTGCTGCTGGTGAGTAGCAGCCGGTACCCAGACCAGTGG AGGTGCTGCTGGTGAGTATCAGCCGGTACCCAGACCAGTGG < 41bp 0.559242816837678 0.821780518029401 NA NA prediction 0.525075402383447 Functional Gain - NUDT4 ENSG00000173598 CDS Human protein_coding chr12:93788403 chr12:93788401 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1943 0 0 1 0 2 NUDT4 chr12:93788495 5'GT 93788495 Upstream 95bp
833 chr19 39966780 39966780 1 + G C KIRP 39966782 + 39966762 39966802 41 TGTCAGCATTTCCAGTGAGCACCTGGAGCCTATCACCCCCA TGTCAGCATTTCCAGTGACCACCTGGAGCCTATCACCCCCA < 41bp 0.426371417265763 0.762439354252516 NA NA prediction 0.524878708505032 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39966782 chr19:39966780 nonsynonymous SNV 0.999 1 19 hm6Am_associated_SNPs_1944 0 0 1 0 2 SUPT5H chr19:39966721 3'AG 39966721 Downstream 60bp
834 chr19 39966780 39966780 1 + G C KIRP 39966782 + 39966762 39966802 41 TGTCAGCATTTCCAGTGAGCACCTGGAGCCTATCACCCCCA TGTCAGCATTTCCAGTGACCACCTGGAGCCTATCACCCCCA < 41bp 0.426371417265763 0.762439354252516 NA NA prediction 0.524878708505032 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39966782 chr19:39966780 nonsynonymous SNV 0.999 1 19 hm6Am_associated_SNPs_1944 0 0 1 0 2 SUPT5H chr19:39966816 5'GT 39966816 Upstream 37bp
835 chr20 44665972 44665972 1 + G T LUSC 44665974 + 44665954 44665994 41 GCCTCTGCTTCTACCTGGGCACTACCTTTGCAGGAGCCATG GCCTCTGCTTCTACCTGGTCACTACCTTTGCAGGAGCCATG < 41bp 0.349213971652931 0.762417399589869 NA NA prediction 0.524834799179738 Functional Gain - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44665974 chr20:44665972 nonsynonymous SNV 1.000 5 19 hm6Am_associated_SNPs_1945 0 0 0 0 2 SLC12A5 chr20:44665894 3'AG 44665894 Downstream 79bp
836 chr20 44665972 44665972 1 + G T LUSC 44665974 + 44665954 44665994 41 GCCTCTGCTTCTACCTGGGCACTACCTTTGCAGGAGCCATG GCCTCTGCTTCTACCTGGTCACTACCTTTGCAGGAGCCATG < 41bp 0.349213971652931 0.762417399589869 NA NA prediction 0.524834799179738 Functional Gain - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44665974 chr20:44665972 nonsynonymous SNV 1.000 5 19 hm6Am_associated_SNPs_1945 0 0 0 0 2 SLC12A5 chr20:44666024 5'GT 44666024 Upstream 53bp
837 chr12 108603977 108603977 1 + G C LUAD 108603979 + 108603959 108603999 41 GCGACGAACGTGAGCGAGGCAGAGTGCGACATGGAGTGCAA GCGACGAACGTGAGCGAGCCAGAGTGCGACATGGAGTGCAA < 41bp 0.407906535455725 0.762388723258121 NA NA prediction 0.524777446516243 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108603979 chr12:108603977 nonsynonymous SNV 0.660 0 19 hm6Am_associated_SNPs_1946 0 0 0 0 1 WSCD2 chr12:108603898 3'AG 108603898 Downstream 80bp
838 chr2 132276080 132276080 1 + G T COAD 132276082 + 132276062 132276102 41 CTCCTGCCTTCTAGGTGAGCAGCTATTCCTGGAGCCAGAGC CTCCTGCCTTCTAGGTGATCAGCTATTCCTGGAGCCAGAGC < 41bp 0.352302770397659 0.761869699375853 NA NA prediction 0.523739398751707 Functional Gain - LOC150776 ENSG00000152117 ncRNA_exonic Human transcribed_processed_pseudogene chr2:132276082 chr2:132276080 . . 0 19 hm6Am_associated_SNPs_1951 0 0 1 1 1 LOC150776 chr2:132276076 3'AG 132276076 Downstream 5bp
839 chr17 71193179 71193179 1 + G C BLCA 71193178 + 71193158 71193198 41 TCACAGACTTCCTGCTGGCCAGAAAGGCAACTATTCAGAAA TCACAGACTTCCTGCTGGCCACAAAGGCAACTATTCAGAAA < 41bp 0.494488502827067 0.761647115820614 NA NA prediction 0.523294231641228 Functional Gain - COG1 ENSG00000166685 CDS Human protein_coding chr17:71193178 chr17:71193179 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_1952 0 0 1 0 1 COG1 chr17:71193220 5'GT 71193220 Upstream 42bp
840 chr10 26939566 26939566 1 + G T LUAD 26939568 + 26939548 26939588 41 GTTCTCGAAGAGGCCCAGGCACATGCTGAAACATGGAAGGT GTTCTCGAAGAGGCCCAGTCACATGCTGAAACATGGAAGGT < 41bp 0.354651978484269 0.76133634139706 NA NA prediction 0.522672682794119 Functional Gain - FAM238B ENSG00000231976 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:26939568 chr10:26939566 . . 0 19 hm6Am_associated_SNPs_1955 0 0 0 0 1 FAM238B chr10:26939483 3'AG 26939483 Downstream 84bp
841 chr1 155279912 155279912 1 + G T BLCA 155279914 + 155279894 155279934 41 AAAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGG AAAGCAGGATTTCGTTCATCACTTCTCCCAGATCGTTAGGG < 41bp 0.341503441071107 0.760654035586186 NA NA prediction 0.521308071172372 Functional Gain - FDPS ENSG00000160752 CDS Human protein_coding chr1:155279914 chr1:155279912 nonsynonymous SNV 0.989 0 19 hm6Am_associated_SNPs_1958 0 0 1 0 3 FDPS chr1:155279834 3'AG 155279834 Downstream 79bp
842 chr1 155279912 155279912 1 + G T BLCA 155279914 + 155279894 155279934 41 AAAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGG AAAGCAGGATTTCGTTCATCACTTCTCCCAGATCGTTAGGG < 41bp 0.341503441071107 0.760654035586186 NA NA prediction 0.521308071172372 Functional Gain - FDPS ENSG00000160752 CDS Human protein_coding chr1:155279914 chr1:155279912 nonsynonymous SNV 0.989 0 19 hm6Am_associated_SNPs_1958 0 0 1 0 3 FDPS chr1:155279855 3'AG 155279855 Downstream 58bp
843 chr1 155279912 155279912 1 + G T BLCA 155279914 + 155279894 155279934 41 AAAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGG AAAGCAGGATTTCGTTCATCACTTCTCCCAGATCGTTAGGG < 41bp 0.341503441071107 0.760654035586186 NA NA prediction 0.521308071172372 Functional Gain - FDPS ENSG00000160752 CDS Human protein_coding chr1:155279914 chr1:155279912 nonsynonymous SNV 0.989 0 19 hm6Am_associated_SNPs_1958 0 0 1 0 3 FDPS chr1:155279996 5'GT 155279996 Upstream 85bp
844 chr1 249139858 249139858 1 + G T rs41315870 249139860 + 249139840 249139880 41 GCTCCAGAGCCCAGACTTGCAGGTTTGCTATTTTCACTTTA GCTCCAGAGCCCAGACTTTCAGGTTTGCTATTTTCACTTTA < 41bp 0.428928997422143 0.760160672391711 NA NA prediction 0.520321344783422 Functional Gain - ZNF672 ENSG00000171161 UTR5 Human protein_coding chr1:249139860 chr1:249139858 . . 0 19 hm6Am_associated_SNPs_1959 0 0 1 0 2 ZNF672 chr1:249139765 3'AG 249139765 Downstream 94bp
845 chr1 249139858 249139858 1 + G T rs41315870 249139860 + 249139840 249139880 41 GCTCCAGAGCCCAGACTTGCAGGTTTGCTATTTTCACTTTA GCTCCAGAGCCCAGACTTTCAGGTTTGCTATTTTCACTTTA < 41bp 0.428928997422143 0.760160672391711 NA NA prediction 0.520321344783422 Functional Gain - ZNF672 ENSG00000171161 UTR5 Human protein_coding chr1:249139860 chr1:249139858 . . 0 19 hm6Am_associated_SNPs_1959 0 0 1 0 2 ZNF672 chr1:249139861 5'GT 249139861 Upstream 4bp
846 chr17 40695098 40695098 1 + G T LUSC 40695100 + 40695080 40695120 41 GCTCTTCCAGCACCAGCCGCAGTTCTGGGGGCCCGCCCAGA GCTCTTCCAGCACCAGCCTCAGTTCTGGGGGCCCGCCCAGA < 41bp 0.35192230227377 0.759892519581068 NA NA prediction 0.519785039162136 Functional Gain - NAGLU ENSG00000108784 CDS Human protein_coding chr17:40695100 chr17:40695098 synonymous SNV . 0 19 hm6Am_associated_SNPs_1963 0 0 0 0 1 NAGLU chr17:40695046 3'AG 40695046 Downstream 53bp
847 chr16 30972772 30972772 1 + G T SARC 30972774 + 30972754 30972794 41 CCCGTGTGCTCTTCACCAGCACTCGGGGCGCCAAGGAAACG CCCGTGTGCTCTTCACCATCACTCGGGGCGCCAAGGAAACG < 41bp 0.340730778964357 0.759854439539765 NA NA prediction 0.51970887907953 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30972774 chr16:30972772 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1964 0 0 1 0 1 SETD1A chr16:30972858 5'GT 30972858 Upstream 87bp
848 chr12 6559357 6559357 1 + G T SARC 6559359 + 6559339 6559379 41 GTCTTCTCGTTCGCAACTGCACCATCACTGCCAATGCTGAG GTCTTCTCGTTCGCAACTTCACCATCACTGCCAATGCTGAG < 41bp 0.333890200011226 0.759203743283638 NA NA prediction 0.518407486567275 Functional Gain - CD27 ENSG00000139193 CDS Human protein_coding chr12:6559359 chr12:6559357 nonsynonymous SNV 0.961 4 19 hm6Am_associated_SNPs_1966 0 0 0 0 1 CD27 chr12:6559339 3'AG 6559339 Downstream 19bp
849 chr7 100552899 100552899 1 + G T LUAD 100552901 + 100552881 100552921 41 GCACCTGTGACAATGGTGGCACCTGGGAACAGGGACAGTGT GCACCTGTGACAATGGTGTCACCTGGGAACAGGGACAGTGT < 41bp 0.346390198669243 0.7583839761555 NA NA prediction 0.516767952310999 Functional Gain - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100552901 chr7:100552899 nonsynonymous SNV 0.004 2 19 hm6Am_associated_SNPs_1972 0 0 0 0 1 MUC3A chr7:100552881 3'AG 100552881 Downstream 19bp
850 chr7 31139786 31139786 1 + G T UCEC 31139788 + 31139768 31139808 41 GCCACAGCGGGCTCAGCAGCACTCTTGCAAGATGTCAGAAC GCCACAGCGGGCTCAGCATCACTCTTGCAAGATGTCAGAAC < 41bp 0.338022091461918 0.757800122998138 NA NA prediction 0.515600245996277 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31139788 chr7:31139786 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_1976 0 0 0 0 3 ADCYAP1R1 chr7:31139741 3'AG 31139741 Downstream 46bp
851 chr7 31139786 31139786 1 + G T UCEC 31139788 + 31139768 31139808 41 GCCACAGCGGGCTCAGCAGCACTCTTGCAAGATGTCAGAAC GCCACAGCGGGCTCAGCATCACTCTTGCAAGATGTCAGAAC < 41bp 0.338022091461918 0.757800122998138 NA NA prediction 0.515600245996277 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31139788 chr7:31139786 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_1976 0 0 0 0 3 ADCYAP1R1 chr7:31139744 3'AG 31139744 Downstream 43bp
852 chr7 31139786 31139786 1 + G T UCEC 31139788 + 31139768 31139808 41 GCCACAGCGGGCTCAGCAGCACTCTTGCAAGATGTCAGAAC GCCACAGCGGGCTCAGCATCACTCTTGCAAGATGTCAGAAC < 41bp 0.338022091461918 0.757800122998138 NA NA prediction 0.515600245996277 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31139788 chr7:31139786 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_1976 0 0 0 0 3 ADCYAP1R1 chr7:31139824 5'GT 31139824 Upstream 39bp
853 chr17 73788042 73788042 1 + G T rs116727751 73788044 + 73788024 73788064 41 CCAGATAAGTGCACAAAAGCAAGATACCCTCGTGGACCTAC CCAGATAAGTGCACAAAATCAAGATACCCTCGTGGACCTAC < 41bp 0.342986465746243 0.757355526734573 NA NA prediction 0.514711053469145 Functional Gain - UNK ENSG00000132478 UTR3 Human protein_coding chr17:73788044 chr17:73788042 . . 0 19 hm6Am_associated_SNPs_1980 0 0 1 0 1 UNK chr17:73788100 5'GT 73788100 Upstream 59bp
854 chr12 49218736 49218736 1 + G T SARC 49218738 + 49218718 49218758 41 CCTTTTCCAAAAAGCCAAGCAGAAGCAAAAGCAGGTGAGTC CCTTTTCCAAAAAGCCAATCAGAAGCAAAAGCAGGTGAGTC < 41bp 0.449722424141264 0.757120742346192 NA NA prediction 0.514241484692384 Functional Gain - CACNB3 ENSG00000167535 CDS Human protein_coding chr12:49218738 chr12:49218736 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_1981 0 0 0 0 2 CACNB3 chr12:49218732 3'AG 49218732 Downstream 5bp
855 chr12 49218736 49218736 1 + G T SARC 49218738 + 49218718 49218758 41 CCTTTTCCAAAAAGCCAAGCAGAAGCAAAAGCAGGTGAGTC CCTTTTCCAAAAAGCCAATCAGAAGCAAAAGCAGGTGAGTC < 41bp 0.449722424141264 0.757120742346192 NA NA prediction 0.514241484692384 Functional Gain - CACNB3 ENSG00000167535 CDS Human protein_coding chr12:49218738 chr12:49218736 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_1981 0 0 0 0 2 CACNB3 chr12:49218751 5'GT 49218751 Upstream 16bp
856 chr16 67229730 67229730 1 + G C SKCM 67229729 + 67229709 67229749 41 GCAAGGACAGTGGTGAGCTCAGTTCACTCCCACTGGGCCCA GCAAGGACAGTGGTGAGCTCACTTCACTCCCACTGGGCCCA < 41bp 0.507756543501343 0.764463640535508 NA NA prediction 0.51341419406833 Functional Gain - E2F4 ENSG00000205250 CDS Human protein_coding chr16:67229729 chr16:67229730 nonsynonymous SNV 0.994 2 22 hm6Am_associated_SNPs_1986 0 0 1 0 1 E2F4 chr16:67229685 3'AG 67229685 Downstream 46bp
857 chrX 152822387 152822387 1 + G T CESC 152822389 + 152822369 152822409 41 TTCCAGGGATTATCGACAGCACCACTGGTGAGCAGCGGCAG TTCCAGGGATTATCGACATCACCACTGGTGAGCAGCGGCAG < 41bp 0.327957390685775 0.756311541178855 NA NA prediction 0.512623082357711 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152822389 chrX:152822387 nonsynonymous SNV 0.847 5 19 hm6Am_associated_SNPs_1990 0 0 0 0 2 ATP2B3 chrX:152822375 3'AG 152822375 Downstream 13bp
858 chrX 152822387 152822387 1 + G T CESC 152822389 + 152822369 152822409 41 TTCCAGGGATTATCGACAGCACCACTGGTGAGCAGCGGCAG TTCCAGGGATTATCGACATCACCACTGGTGAGCAGCGGCAG < 41bp 0.327957390685775 0.756311541178855 NA NA prediction 0.512623082357711 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152822389 chrX:152822387 nonsynonymous SNV 0.847 5 19 hm6Am_associated_SNPs_1990 0 0 0 0 2 ATP2B3 chrX:152822481 5'GT 152822481 Upstream 95bp
859 chrX 153607910 153607910 1 + G T LIHC 153607912 + 153607892 153607932 41 GCGCCGGTACAACATCCCGCACGGGCCTGTAGTAGGTACGC GCGCCGGTACAACATCCCTCACGGGCCTGTAGTAGGTACGC < 41bp 0.667477397499713 0.923780253778755 NA NA prediction 0.512605712558083 Functional Gain - EMD ENSG00000102119 CDS Human protein_coding chrX:153607912 chrX:153607910 synonymous SNV . 0 19 hm6Am_associated_SNPs_1991 0 0 1 0 1 EMD chrX:153607926 5'GT 153607926 Upstream 17bp
860 chr3 10885932 10885932 1 + G C LGG 10885934 + 10885914 10885954 41 CATCTCTGACGGGATCGAGCACATCGGGAACCTTCGCTGGG CATCTCTGACGGGATCGACCACATCGGGAACCTTCGCTGGG < 41bp 0.6316933689464 0.887934098439844 NA NA prediction 0.512481458986887 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10885934 chr3:10885932 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_1992 0 0 1 0 2 SLC6A11 chr3:10885899 3'AG 10885899 Downstream 34bp
861 chr3 10885932 10885932 1 + G C LGG 10885934 + 10885914 10885954 41 CATCTCTGACGGGATCGAGCACATCGGGAACCTTCGCTGGG CATCTCTGACGGGATCGACCACATCGGGAACCTTCGCTGGG < 41bp 0.6316933689464 0.887934098439844 NA NA prediction 0.512481458986887 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10885934 chr3:10885932 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_1992 0 0 1 0 2 SLC6A11 chr3:10886031 5'GT 10886031 Upstream 100bp
862 chr1 156593692 156593692 1 + G T UCEC 156593694 + 156593674 156593714 41 CGCTGCCCTGCGTCCTGGGCACCACGCCTCCCAGCTACAAG CGCTGCCCTGCGTCCTGGTCACCACGCCTCCCAGCTACAAG < 41bp 0.669773151942386 0.926011346137674 NA NA prediction 0.512476388390576 Functional Gain - HAPLN2 ENSG00000132702 CDS Human protein_coding chr1:156593694 chr1:156593692 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_1993 0 0 0 0 1 HAPLN2 chr1:156593599 3'AG 156593599 Downstream 94bp
863 chr16 2256103 2256103 1 + G C LIHC 2256105 + 2256085 2256125 41 CCATGAACACCTCCCCAGGCACGGTGGGCAGTGACCCGGTC CCATGAACACCTCCCCAGCCACGGTGGGCAGTGACCCGGTC < 41bp 0.625107523564311 0.881103090489837 NA NA prediction 0.511991133851053 Functional Gain - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2256105 chr16:2256103 nonsynonymous SNV 0.996 3 19 hm6Am_associated_SNPs_1995 0 0 1 0 2 MLST8 chr16:2256032 3'AG 2256032 Downstream 72bp
864 chr16 2256103 2256103 1 + G C LIHC 2256105 + 2256085 2256125 41 CCATGAACACCTCCCCAGGCACGGTGGGCAGTGACCCGGTC CCATGAACACCTCCCCAGCCACGGTGGGCAGTGACCCGGTC < 41bp 0.625107523564311 0.881103090489837 NA NA prediction 0.511991133851053 Functional Gain - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2256105 chr16:2256103 nonsynonymous SNV 0.996 3 19 hm6Am_associated_SNPs_1995 0 0 1 0 2 MLST8 chr16:2256062 3'AG 2256062 Downstream 42bp
865 chr16 68288932 68288932 1 + G T UCEC 68288934 + 68288914 68288954 41 TCCTGGACCCCAGCAAAAGCAGCGTGGGTATGTAGCCCTTA TCCTGGACCCCAGCAAAATCAGCGTGGGTATGTAGCCCTTA < 41bp 0.338721991243831 0.755894790608476 NA NA prediction 0.511789581216952 Functional Gain - PLA2G15 ENSG00000103066 CDS Human protein_coding chr16:68288934 chr16:68288932 nonsynonymous SNV 0.952 1 19 hm6Am_associated_SNPs_1996 0 0 0 0 1 PLA2G15 chr16:68288940 5'GT 68288940 Upstream 9bp
866 chr6 30554421 30554421 1 + G T OV 30554423 + 30554403 30554443 41 TCTTCCATCTTGCAGTTTGCATTGTGGGCCCTAATGGTGTG TCTTCCATCTTGCAGTTTTCATTGTGGGCCCTAATGGTGTG < 41bp 0.509030291844941 0.764561783487639 NA NA prediction 0.511062983285395 Functional Gain - ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30554423 chr6:30554421 nonsynonymous SNV 0.900 4 19 hm6Am_associated_SNPs_2000 0 0 1 0 2 ABCF1 chr6:30554418 3'AG 30554418 Downstream 4bp
867 chr6 30554421 30554421 1 + G T OV 30554423 + 30554403 30554443 41 TCTTCCATCTTGCAGTTTGCATTGTGGGCCCTAATGGTGTG TCTTCCATCTTGCAGTTTTCATTGTGGGCCCTAATGGTGTG < 41bp 0.509030291844941 0.764561783487639 NA NA prediction 0.511062983285395 Functional Gain - ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30554423 chr6:30554421 nonsynonymous SNV 0.900 4 19 hm6Am_associated_SNPs_2000 0 0 1 0 2 ABCF1 chr6:30554488 5'GT 30554488 Upstream 68bp
868 chrX 154002941 154002941 1 + G T SARC 154002943 + 154002923 154002963 41 ATGGGAAGCCCACAGACAGCACACCTGCCACCTGGAAGCAG ATGGGAAGCCCACAGACATCACACCTGCCACCTGGAAGCAG < 41bp 0.329001954797363 0.754981841021743 NA NA prediction 0.509963682043487 Functional Gain - DKC1 ENSG00000130826 CDS Human protein_coding chrX:154002943 chrX:154002941 nonsynonymous SNV 0.060 3 19 hm6Am_associated_SNPs_2003 0 0 1 0 3 DKC1 chrX:154002877 3'AG 154002877 Downstream 65bp
869 chrX 154002941 154002941 1 + G T SARC 154002943 + 154002923 154002963 41 ATGGGAAGCCCACAGACAGCACACCTGCCACCTGGAAGCAG ATGGGAAGCCCACAGACATCACACCTGCCACCTGGAAGCAG < 41bp 0.329001954797363 0.754981841021743 NA NA prediction 0.509963682043487 Functional Gain - DKC1 ENSG00000130826 CDS Human protein_coding chrX:154002943 chrX:154002941 nonsynonymous SNV 0.060 3 19 hm6Am_associated_SNPs_2003 0 0 1 0 3 DKC1 chrX:154002965 5'GT 154002965 Upstream 25bp
870 chrX 154002941 154002941 1 + G T SARC 154002943 + 154002923 154002963 41 ATGGGAAGCCCACAGACAGCACACCTGCCACCTGGAAGCAG ATGGGAAGCCCACAGACATCACACCTGCCACCTGGAAGCAG < 41bp 0.329001954797363 0.754981841021743 NA NA prediction 0.509963682043487 Functional Gain - DKC1 ENSG00000130826 CDS Human protein_coding chrX:154002943 chrX:154002941 nonsynonymous SNV 0.060 3 19 hm6Am_associated_SNPs_2003 0 0 1 0 3 DKC1 chrX:154002980 5'GT 154002980 Upstream 40bp
871 chr14 24675911 24675911 1 + G T KIRC 24675913 + 24675893 24675933 41 GCATTGCCTACCTGCACAGCAAGAGCATCGTGCACCGGTGA GCATTGCCTACCTGCACATCAAGAGCATCGTGCACCGGTGA < 41bp 0.649141703883384 0.903776624186808 NA NA prediction 0.509269840606849 Functional Gain - TSSK4 ENSG00000139908 CDS Human protein_coding chr14:24675913 chr14:24675911 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_2007 0 0 0 0 1 TSSK4 chr14:24675929 5'GT 24675929 Upstream 19bp
872 chr7 140111711 140111711 1 + G A rs146219058 140111713 + 140111693 140111733 41 CTGGCCAGGAGCGCTTCCGCACCATCACCCAAAGCTACTAC CTGGCCAGGAGCGCTTCCACACCATCACCCAAAGCTACTAC < 41bp 0.500349701970614 0.754728187912262 NA NA prediction 0.508756971883295 Functional Gain - RAB19 ENSG00000146955 CDS Human protein_coding chr7:140111713 chr7:140111711 nonsynonymous SNV 0.987 3 19 hm6Am_associated_SNPs_2009 0 0 0 0 1 RAB19 chr7:140111674 3'AG 140111674 Downstream 38bp
873 chr17 65822445 65822445 1 + G T UCEC 65822447 + 65822427 65822467 41 GCCATAGTACCTACAGCAGCACTCCAGGTACCCACCCAGCC GCCATAGTACCTACAGCATCACTCCAGGTACCCACCCAGCC < 41bp 0.664943807125991 0.919214870779332 NA NA prediction 0.508542127306683 Functional Gain - BPTF ENSG00000171634 CDS Human protein_coding chr17:65822447 chr17:65822445 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_2011 0 0 1 0 1 BPTF chr17:65822453 5'GT 65822453 Upstream 9bp
874 chr19 11348221 11348221 1 + G T CESC 11348223 + 11348203 11348243 41 TCAGGCGCCCGTGCTGCAGCAGTGGGATCCACTGGGGAGAG TCAGGCGCCCGTGCTGCATCAGTGGGATCCACTGGGGAGAG < 41bp 0.671584402910058 0.925736458120414 NA NA prediction 0.508304110420713 Functional Gain - DOCK6 ENSG00000130158 CDS Human protein_coding chr19:11348223 chr19:11348221 nonsynonymous SNV 0.997 1 19 hm6Am_associated_SNPs_2013 0 0 0 0 1 DOCK6 chr19:11348250 5'GT 11348250 Upstream 30bp
875 chr16 30767535 30767535 1 + G C BLCA 30767534 + 30767514 30767554 41 ACCCCAGGGTATCTAGCGCCAGAGATCCTTAAATGCTCCAT ACCCCAGGGTATCTAGCGCCACAGATCCTTAAATGCTCCAT < 41bp 0.513937806513448 0.767877186254043 NA NA prediction 0.50787875948119 Functional Gain - PHKG2 ENSG00000156873 CDS Human protein_coding chr16:30767534 chr16:30767535 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_2014 0 0 1 0 1 PHKG2 chr16:30767593 5'GT 30767593 Upstream 59bp
876 chr1 18958162 18958162 1 + G T rs552417333 18958164 + 18958144 18958184 41 CGGGGCAGAACTACCCCCGCACGGGATTCCCTTTGGAAGGT CGGGGCAGAACTACCCCCTCACGGGATTCCCTTTGGAAGGT < 41bp 0.334152859156973 0.753883678783148 NA NA prediction 0.507767357566296 Functional Gain - PAX7 ENSG00000009709 CDS Human protein_coding chr1:18958164 chr1:18958162 nonsynonymous SNV 0.957 5 19 hm6Am_associated_SNPs_2016 0 0 0 0 1 PAX7 chr1:18958182 5'GT 18958182 Upstream 21bp
877 chr5 74848405 74848405 1 + G T UCEC 74848407 + 74848387 74848427 41 AGCCAACAGCTAAGAAAAGCACAATTACAGGTATTAATTAA AGCCAACAGCTAAGAAAATCACAATTACAGGTATTAATTAA < 41bp 0.459720609968228 0.7537129806249 NA NA prediction 0.5074259612498 Functional Gain - POLK ENSG00000122008 CDS Human protein_coding chr5:74848407 chr5:74848405 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2018 0 0 1 1 1 POLK chr5:74848416 5'GT 74848416 Upstream 12bp
878 chr5 177571012 177571012 1 + G A LGG 177571014 + 177570994 177571034 41 GTTCAAGCTGCACCGACTGCACTTCATCCGCCTCTTGGCAG GTTCAAGCTGCACCGACTACACTTCATCCGCCTCTTGGCAG < 41bp 0.506129551836834 0.759841611723464 NA NA prediction 0.50742411977326 Functional Gain - RMND5B ENSG00000145916 CDS Human protein_coding chr5:177571014 chr5:177571012 synonymous SNV . 0 19 hm6Am_associated_SNPs_2019 0 0 0 0 2 RMND5B chr5:177570943 3'AG 177570943 Downstream 70bp
879 chr5 177571012 177571012 1 + G A LGG 177571014 + 177570994 177571034 41 GTTCAAGCTGCACCGACTGCACTTCATCCGCCTCTTGGCAG GTTCAAGCTGCACCGACTACACTTCATCCGCCTCTTGGCAG < 41bp 0.506129551836834 0.759841611723464 NA NA prediction 0.50742411977326 Functional Gain - RMND5B ENSG00000145916 CDS Human protein_coding chr5:177571014 chr5:177571012 synonymous SNV . 0 19 hm6Am_associated_SNPs_2019 0 0 0 0 2 RMND5B chr5:177571109 5'GT 177571109 Upstream 98bp
880 chr1 201163315 201163315 1 + G T COAD 201163317 + 201163297 201163337 41 CCCACATCCCTGGAGTGAGCATCTGGCAGCTGGTGGAGGAG CCCACATCCCTGGAGTGATCATCTGGCAGCTGGTGGAGGAG < 41bp 0.342340246737875 0.753554188202004 NA NA prediction 0.507108376404008 Functional Gain - IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201163317 chr1:201163315 nonsynonymous SNV 0.994 1 19 hm6Am_associated_SNPs_2020 0 0 0 0 1 IGFN1 chr1:201163282 3'AG 201163282 Downstream 34bp
881 chr11 5009511 5009511 1 + G T CESC 5009513 + 5009493 5009533 41 GTTCCAGTGCCCCCTGCTGCAGACCATAAAGGATGGGACTT GTTCCAGTGCCCCCTGCTTCAGACCATAAAGGATGGGACTT < 41bp 0.332592360449101 0.753084694905971 NA NA prediction 0.506169389811942 Functional Gain - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5009513 chr11:5009511 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_2025 0 0 0 0 1 MMP26 chr11:5009540 5'GT 5009540 Upstream 30bp
882 chr22 27021531 27021531 1 + G T LUAD 27021533 + 27021513 27021553 41 GCTGGGATGCCTGGGGCGGCAACACGGCCTACCCCGCCGAG GCTGGGATGCCTGGGGCGTCAACACGGCCTACCCCGCCGAG < 41bp 0.327647638518576 0.752936722697285 NA NA prediction 0.50587344539457 Functional Gain - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27021533 chr22:27021531 nonsynonymous SNV 0.918 4 19 hm6Am_associated_SNPs_2027 0 0 0 0 2 CRYBA4 chr22:27021445 3'AG 27021445 Downstream 87bp
883 chr22 27021531 27021531 1 + G T LUAD 27021533 + 27021513 27021553 41 GCTGGGATGCCTGGGGCGGCAACACGGCCTACCCCGCCGAG GCTGGGATGCCTGGGGCGTCAACACGGCCTACCCCGCCGAG < 41bp 0.327647638518576 0.752936722697285 NA NA prediction 0.50587344539457 Functional Gain - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27021533 chr22:27021531 nonsynonymous SNV 0.918 4 19 hm6Am_associated_SNPs_2027 0 0 0 0 2 CRYBA4 chr22:27021586 5'GT 27021586 Upstream 56bp
884 chr18 72180833 72180833 1 + G A HNSC 72180835 + 72180815 72180855 41 GGAACATCCTGATCCCCGGCATTAACGAGGCCGTGGCCGCC GGAACATCCTGATCCCCGACATTAACGAGGCCGTGGCCGCC < 41bp 0.509522494154529 0.762409573145299 NA NA prediction 0.50577415798154 Functional Gain - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72180835 chr18:72180833 nonsynonymous SNV 0.657 2 19 hm6Am_associated_SNPs_2028 0 0 1 0 1 CNDP2 chr18:72180794 3'AG 72180794 Downstream 40bp
885 chr19 39964120 39964120 1 + G C HNSC 39964119 + 39964099 39964139 41 TGGCAGCCGCACTCCTGCCCAGAGTGGGGCCTGGGACCCCA TGGCAGCCGCACTCCTGCCCACAGTGGGGCCTGGGACCCCA < 41bp 0.515860140337602 0.768546751093761 NA NA prediction 0.505373221512319 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39964119 chr19:39964120 nonsynonymous SNV 0.998 1 22 hm6Am_associated_SNPs_2032 0 0 1 0 1 SUPT5H chr19:39964056 3'AG 39964056 Downstream 65bp
886 chr2 113479636 113479636 1 + G A rs188470836 113479638 + 113479618 113479658 41 GGTGTGCATTGGGTACCCGCATGAGATCCTGCGCTACACCT GGTGTGCATTGGGTACCCACATGAGATCCTGCGCTACACCT < 41bp 0.501337397665749 0.753846420699467 NA NA prediction 0.505018046067436 Functional Gain - NT5DC4 ENSG00000144130 CDS Human protein_coding chr2:113479638 chr2:113479636 synonymous SNV . 0 19 hm6Am_associated_SNPs_2033 0 0 0 0 2 NT5DC4 chr2:113479563 3'AG 113479563 Downstream 74bp
887 chr2 113479636 113479636 1 + G A rs188470836 113479638 + 113479618 113479658 41 GGTGTGCATTGGGTACCCGCATGAGATCCTGCGCTACACCT GGTGTGCATTGGGTACCCACATGAGATCCTGCGCTACACCT < 41bp 0.501337397665749 0.753846420699467 NA NA prediction 0.505018046067436 Functional Gain - NT5DC4 ENSG00000144130 CDS Human protein_coding chr2:113479638 chr2:113479636 synonymous SNV . 0 19 hm6Am_associated_SNPs_2033 0 0 0 0 2 NT5DC4 chr2:113479680 5'GT 113479680 Upstream 45bp
888 chr3 186503777 186503777 1 + G T UCEC 186503779 + 186503759 186503799 41 CAAAAACTGCAGGCTGAAGCACCACATATTGTTGTTGGTAC CAAAAACTGCAGGCTGAATCACCACATATTGTTGTTGGTAC < 41bp 0.350349485215147 0.752502186083137 NA NA prediction 0.505004372166273 Functional Gain - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186503779 chr3:186503777 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_2034 0 0 1 0 1 EIF4A2 chr3:186503840 5'GT 186503840 Upstream 64bp
889 chrX 67718948 67718948 1 + G A CESC 67718950 + 67718930 67718970 41 CCAGGAGACCCGGGGACAGCATCGCCCAGGCCCCTGGTGAG CCAGGAGACCCGGGGACAACATCGCCCAGGCCCCTGGTGAG < 41bp 0.511746803293627 0.763004440362851 NA NA prediction 0.502515274138447 Functional Gain - YIPF6 ENSG00000181704 CDS Human protein_coding chrX:67718950 chrX:67718948 nonsynonymous SNV 0.610 0 19 hm6Am_associated_SNPs_2050 0 0 1 0 1 YIPF6 chrX:67718965 5'GT 67718965 Upstream 18bp
890 chr11 63979169 63979169 1 + G A rs150869428 63979171 + 63979151 63979191 41 GGCATCAAGGCCGGGGACGCACTCTGGCTGCGCTTCAAGTA GGCATCAAGGCCGGGGACACACTCTGGCTGCGCTTCAAGTA < 41bp 0.509050996269248 0.760159252711354 NA NA prediction 0.502216512884211 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63979171 chr11:63979169 nonsynonymous SNV 0.661 0 19 hm6Am_associated_SNPs_2052 0 0 1 0 2 FERMT3 chr11:63979117 3'AG 63979117 Downstream 53bp
891 chr11 63979169 63979169 1 + G A rs150869428 63979171 + 63979151 63979191 41 GGCATCAAGGCCGGGGACGCACTCTGGCTGCGCTTCAAGTA GGCATCAAGGCCGGGGACACACTCTGGCTGCGCTTCAAGTA < 41bp 0.509050996269248 0.760159252711354 NA NA prediction 0.502216512884211 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63979171 chr11:63979169 nonsynonymous SNV 0.661 0 19 hm6Am_associated_SNPs_2052 0 0 1 0 2 FERMT3 chr11:63979219 5'GT 63979219 Upstream 51bp
892 chr10 1151085 1151085 1 + G A STAD 1151087 + 1151067 1151107 41 GCACGACCAGGAGTTGACGCACTGCTGCACACACCCCACCC GCACGACCAGGAGTTGACACACTGCTGCACACACCCCACCC < 41bp 0.508093456709875 0.759146326610731 NA NA prediction 0.502105739801712 Functional Gain - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1151087 chr10:1151085 synonymous SNV . 0 19 hm6Am_associated_SNPs_2054 0 0 0 0 2 WDR37 chr10:1151066 3'AG 1151066 Downstream 20bp
893 chr10 1151085 1151085 1 + G A STAD 1151087 + 1151067 1151107 41 GCACGACCAGGAGTTGACGCACTGCTGCACACACCCCACCC GCACGACCAGGAGTTGACACACTGCTGCACACACCCCACCC < 41bp 0.508093456709875 0.759146326610731 NA NA prediction 0.502105739801712 Functional Gain - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1151087 chr10:1151085 synonymous SNV . 0 19 hm6Am_associated_SNPs_2054 0 0 0 0 2 WDR37 chr10:1151181 5'GT 1151181 Upstream 97bp
894 chr19 51729260 51729260 1 + G A READ 51729262 + 51729242 51729282 41 CACGGCCCCAGGACCACGGCACCAACCTGACCTGTCAGGTG CACGGCCCCAGGACCACGACACCAACCTGACCTGTCAGGTG < 41bp 0.512769203007309 0.76377348288086 NA NA prediction 0.502008559747101 Functional Gain - CD33 ENSG00000105383 CDS Human protein_coding chr19:51729262 chr19:51729260 nonsynonymous SNV 0.528 2 19 hm6Am_associated_SNPs_2056 0 0 1 0 1 CD33 chr19:51729337 5'GT 51729337 Upstream 78bp
895 chr8 145535260 145535260 1 + G T SARC 145535262 + 145535242 145535282 41 CCGGCAGTTCTCCCTGGAGCACGTCCACGGCTCGGGCCCCT CCGGCAGTTCTCCCTGGATCACGTCCACGGCTCGGGCCCCT < 41bp 0.333056676302887 0.750931819033484 NA NA prediction 0.501863638066968 Functional Gain - HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535262 chr8:145535260 nonsynonymous SNV 0.917 1 19 hm6Am_associated_SNPs_2058 0 0 1 0 2 HSF1 chr8:145535191 3'AG 145535191 Downstream 70bp
896 chr8 145535260 145535260 1 + G T SARC 145535262 + 145535242 145535282 41 CCGGCAGTTCTCCCTGGAGCACGTCCACGGCTCGGGCCCCT CCGGCAGTTCTCCCTGGATCACGTCCACGGCTCGGGCCCCT < 41bp 0.333056676302887 0.750931819033484 NA NA prediction 0.501863638066968 Functional Gain - HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535262 chr8:145535260 nonsynonymous SNV 0.917 1 19 hm6Am_associated_SNPs_2058 0 0 1 0 2 HSF1 chr8:145535287 5'GT 145535287 Upstream 28bp
897 chr16 731217 731217 1 + G A STAD 731219 + 731199 731239 41 CTACCTGAAGATGCAGCAGCACGAGCAGGCCCTGGCCGACT CTACCTGAAGATGCAGCAACACGAGCAGGCCCTGGCCGACT < 41bp 0.500860894971105 0.751425167550806 NA NA prediction 0.501128545159401 Functional Gain - STUB1 ENSG00000103266 CDS Human protein_coding chr16:731219 chr16:731217 synonymous SNV . 0 19 hm6Am_associated_SNPs_2070 0 0 1 0 1 STUB1 chr16:731152 3'AG 731152 Downstream 66bp
898 chr17 7286575 7286575 1 + G A COAD 7286577 + 7286557 7286597 41 GGCCTCCCACAGCCCAGCGCAGACTGTCCGAAGCTCTGAAA GGCCTCCCACAGCCCAGCACAGACTGTCCGAAGCTCTGAAA < 41bp 0.503525335713909 0.754073562518495 NA NA prediction 0.501096453609171 Functional Gain - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7286577 chr17:7286575 nonsynonymous SNV 0.998 1 19 hm6Am_associated_SNPs_2071 0 0 0 0 2 TNK1 chr17:7286569 3'AG 7286569 Downstream 7bp
899 chr17 7286575 7286575 1 + G A COAD 7286577 + 7286557 7286597 41 GGCCTCCCACAGCCCAGCGCAGACTGTCCGAAGCTCTGAAA GGCCTCCCACAGCCCAGCACAGACTGTCCGAAGCTCTGAAA < 41bp 0.503525335713909 0.754073562518495 NA NA prediction 0.501096453609171 Functional Gain - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7286577 chr17:7286575 nonsynonymous SNV 0.998 1 19 hm6Am_associated_SNPs_2071 0 0 0 0 2 TNK1 chr17:7286639 5'GT 7286639 Upstream 65bp
900 chr10 38645414 38645414 1 + G C COAD 38645416 + 38645396 38645436 41 TTTTGATTACCGGGGCTAGCAGGTGAGGCTCCTTTGTGTTG TTTTGATTACCGGGGCTACCAGGTGAGGCTCCTTTGTGTTG < 41bp 0.400088195757704 0.750505503926274 NA NA prediction 0.501011007852548 Functional Gain - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38645416 chr10:38645414 . . 0 19 hm6Am_associated_SNPs_2074 0 0 1 0 1 HSD17B7P2 chr10:38645417 5'GT 38645417 Upstream 4bp
901 chr11 118997780 118997780 1 + G A SARC 118997782 + 118997762 118997802 41 CACTCAGCACCTGCAGCAGCACCTGCATGGCTCTGGGGAGG CACTCAGCACCTGCAGCAACACCTGCATGGCTCTGGGGAGG < 41bp 0.51939044036143 0.769616066227451 NA NA prediction 0.500451251732041 Functional Gain - HINFP ENSG00000172273 CDS Human protein_coding chr11:118997782 chr11:118997780 synonymous SNV . 0 19 hm6Am_associated_SNPs_2079 0 0 1 0 1 HINFP chr11:118997835 5'GT 118997835 Upstream 56bp
902 chr1 46972778 46972778 1 + G A GBM 46972780 + 46972760 46972800 41 GGCAGCCCAGCAGGCCCAGCATGCCCCCGACTACCGGCCTT GGCAGCCCAGCAGGCCCAACATGCCCCCGACTACCGGCCTT < 41bp 0.514752602002605 0.764909357996875 NA NA prediction 0.500313511988539 Functional Gain - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46972780 chr1:46972778 synonymous SNV . 0 19 hm6Am_associated_SNPs_2080 0 0 0 0 1 DMBX1 chr1:46972836 5'GT 46972836 Upstream 59bp
903 chr16 88052119 88052119 1 + G A STAD 88052121 + 88052101 88052141 41 CATCCCCTCCGACATGCTGCACATCAGCACCAACTGCCGCA CATCCCCTCCGACATGCTACACATCAGCACCAACTGCCGCA < 41bp 0.501629145145909 0.751534450516384 NA NA prediction 0.499810610740948 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88052121 chr16:88052119 synonymous SNV . 0 19 hm6Am_associated_SNPs_2084 0 0 0 0 1 BANP chr16:88052034 3'AG 88052034 Downstream 86bp
904 chr16 56995983 56995983 1 + G A UVM 56995985 + 56995965 56996005 41 AGGCAGGCATCGTGTGCCGCATCACCAAGCCTGCCCTCCTG AGGCAGGCATCGTGTGCCACATCACCAAGCCTGCCCTCCTG < 41bp 0.519576224576865 0.768684630524029 NA NA prediction 0.498216811894327 Functional Gain - CETP ENSG00000087237 CDS Human protein_coding chr16:56995985 chr16:56995983 nonsynonymous SNV 0.960 2 19 hm6Am_associated_SNPs_2096 1 0 0 0 1 CETP chr16:56996009 5'GT 56996009 Upstream 27bp
905 chr20 61941785 61941785 1 + G A UCEC 61941787 + 61941767 61941807 41 TGCACAACCTGGCCTCCCGCACAGAGTACCTGGTCTCCGTG TGCACAACCTGGCCTCCCACACAGAGTACCTGGTCTCCGTG < 41bp 0.497151115707857 0.748981286308922 NA NA prediction 0.497962572617844 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61941787 chr20:61941785 nonsynonymous SNV 0.005 0 19 hm6Am_associated_SNPs_2098 0 0 0 0 2 COL20A1 chr20:61941733 3'AG 61941733 Downstream 53bp
906 chr20 61941785 61941785 1 + G A UCEC 61941787 + 61941767 61941807 41 TGCACAACCTGGCCTCCCGCACAGAGTACCTGGTCTCCGTG TGCACAACCTGGCCTCCCACACAGAGTACCTGGTCTCCGTG < 41bp 0.497151115707857 0.748981286308922 NA NA prediction 0.497962572617844 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61941787 chr20:61941785 nonsynonymous SNV 0.005 0 19 hm6Am_associated_SNPs_2098 0 0 0 0 2 COL20A1 chr20:61941862 5'GT 61941862 Upstream 78bp
907 chr22 31520867 31520867 1 + G T THYM 31520869 + 31520849 31520889 41 CTCCCAGCAAAGAAGAACGCAGCCCTAGGACCCTCGGAACC CTCCCAGCAAAGAAGAACTCAGCCCTAGGACCCTCGGAACC < 41bp 0.598060785748568 0.847023826944134 NA NA prediction 0.497926082391132 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31520869 chr22:31520867 nonsynonymous SNV 0.005 1 19 hm6Am_associated_SNPs_2099 0 0 0 0 2 INPP5J chr22:31520831 3'AG 31520831 Downstream 37bp
908 chr22 31520867 31520867 1 + G T THYM 31520869 + 31520849 31520889 41 CTCCCAGCAAAGAAGAACGCAGCCCTAGGACCCTCGGAACC CTCCCAGCAAAGAAGAACTCAGCCCTAGGACCCTCGGAACC < 41bp 0.598060785748568 0.847023826944134 NA NA prediction 0.497926082391132 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31520869 chr22:31520867 nonsynonymous SNV 0.005 1 19 hm6Am_associated_SNPs_2099 0 0 0 0 2 INPP5J chr22:31520892 5'GT 31520892 Upstream 26bp
909 chr19 36394742 36394742 1 + G A STAD 36394744 + 36394724 36394764 41 GTGGCTGCTGATGCGGTGGCATCGCTGCTCATCGTGGGGGC GTGGCTGCTGATGCGGTGACATCGCTGCTCATCGTGGGGGC < 41bp 0.510545794837596 0.75948589473104 NA NA prediction 0.497880199786889 Functional Gain - HCST ENSG00000126264 CDS Human protein_coding chr19:36394744 chr19:36394742 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_2100 0 0 0 0 2 HCST chr19:36394674 3'AG 36394674 Downstream 69bp
910 chr19 36394742 36394742 1 + G A STAD 36394744 + 36394724 36394764 41 GTGGCTGCTGATGCGGTGGCATCGCTGCTCATCGTGGGGGC GTGGCTGCTGATGCGGTGACATCGCTGCTCATCGTGGGGGC < 41bp 0.510545794837596 0.75948589473104 NA NA prediction 0.497880199786889 Functional Gain - HCST ENSG00000126264 CDS Human protein_coding chr19:36394744 chr19:36394742 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_2100 0 0 0 0 2 HCST chr19:36394805 5'GT 36394805 Upstream 64bp
911 chr22 38461040 38461040 1 + G A KIRP 38461042 + 38461022 38461062 41 CCCCAGCAGCCTTGGACGGCACAGTGGCAGCTGGCGATGAG CCCCAGCAGCCTTGGACGACACAGTGGCAGCTGGCGATGAG < 41bp 0.514475938562074 0.7633336677523 NA NA prediction 0.497715458380452 Functional Gain - PICK1 ENSG00000100151 CDS Human protein_coding chr22:38461042 chr22:38461040 nonsynonymous SNV 0.999 2 19 hm6Am_associated_SNPs_2102 0 0 1 0 2 PICK1 chr22:38461009 3'AG 38461009 Downstream 32bp
912 chr22 38461040 38461040 1 + G A KIRP 38461042 + 38461022 38461062 41 CCCCAGCAGCCTTGGACGGCACAGTGGCAGCTGGCGATGAG CCCCAGCAGCCTTGGACGACACAGTGGCAGCTGGCGATGAG < 41bp 0.514475938562074 0.7633336677523 NA NA prediction 0.497715458380452 Functional Gain - PICK1 ENSG00000100151 CDS Human protein_coding chr22:38461042 chr22:38461040 nonsynonymous SNV 0.999 2 19 hm6Am_associated_SNPs_2102 0 0 1 0 2 PICK1 chr22:38461137 5'GT 38461137 Upstream 98bp
913 chr11 62975741 62975741 1 + G T rs60947803 62975743 + 62975723 62975763 41 GGCTGCAGTATGATACCAGCACTTCAGGAACCATGGTAAGG GGCTGCAGTATGATACCATCACTTCAGGAACCATGGTAAGG < 41bp 0.36063031586303 0.748794807179546 NA NA prediction 0.497589614359093 Functional Gain - SLC22A25 ENSG00000184999 UTR5 Human protein_coding chr11:62975743 chr11:62975741 . . 0 19 hm6Am_associated_SNPs_2104 0 0 0 0 1 SLC22A25 chr11:62975757 5'GT 62975757 Upstream 17bp
914 chr11 66190194 66190194 1 + G C CESC 66190193 + 66190173 66190213 41 CTCCAAGTCCCTCAGGCGCCAGAGTGCAGGCAACAAACTCG CTCCAAGTCCCTCAGGCGCCACAGTGCAGGCAACAAACTCG < 41bp 0.511020590671171 0.759780192686579 NA NA prediction 0.497519204030815 Functional Gain - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66190193 chr11:66190194 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_2106 0 0 0 0 1 NPAS4 chr11:66190145 3'AG 66190145 Downstream 50bp
915 chr20 30507689 30507689 1 + G A PRAD 30507691 + 30507671 30507711 41 CCCGGTCTCAAGGGAAAGGCATCTTCCTCTTCCGTAGGCTG CCCGGTCTCAAGGGAAAGACATCTTCCTCTTCCGTAGGCTG < 41bp 0.507381774306353 0.75612757624105 NA NA prediction 0.497491603869394 Functional Gain - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30507691 chr20:30507689 nonsynonymous SNV 0.998 4 19 hm6Am_associated_SNPs_2107 0 0 0 0 2 TTLL9 chr20:30507667 3'AG 30507667 Downstream 23bp
916 chr20 30507689 30507689 1 + G A PRAD 30507691 + 30507671 30507711 41 CCCGGTCTCAAGGGAAAGGCATCTTCCTCTTCCGTAGGCTG CCCGGTCTCAAGGGAAAGACATCTTCCTCTTCCGTAGGCTG < 41bp 0.507381774306353 0.75612757624105 NA NA prediction 0.497491603869394 Functional Gain - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30507691 chr20:30507689 nonsynonymous SNV 0.998 4 19 hm6Am_associated_SNPs_2107 0 0 0 0 2 TTLL9 chr20:30507735 5'GT 30507735 Upstream 47bp
917 chr15 77324759 77324759 1 + G A UCEC 77324761 + 77324741 77324781 41 GTCCGGCTTGCGGACAGCGCAGCCTCTAGGTGCATTGAGCC GTCCGGCTTGCGGACAGCACAGCCTCTAGGTGCATTGAGCC < 41bp 0.499510804740168 0.748734735415948 NA NA prediction 0.497469470831897 Functional Gain - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77324761 chr15:77324759 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_2108 0 0 1 0 1 PSTPIP1 chr15:77324769 5'GT 77324769 Upstream 11bp
918 chr5 447679 447679 1 + G A PRAD 447681 + 447661 447701 41 CACAGTTGGACGGGGTGCGCACAGGCCTCAGCCAGCTCCAC CACAGTTGGACGGGGTGCACACAGGCCTCAGCCAGCTCCAC < 41bp 0.517868908597006 0.766574977160474 NA NA prediction 0.497412137126937 Functional Gain - EXOC3 ENSG00000180104 CDS Human protein_coding chr5:447681 chr5:447679 nonsynonymous SNV 0.958 4 19 hm6Am_associated_SNPs_2110 0 0 1 0 1 EXOC3 chr5:447648 3'AG 447648 Downstream 32bp
919 chr6 10493086 10493086 1 + G C rs76154123 10493088 + 10493068 10493108 41 CCAGGCTGGAGTGCAGTGGCACTATCTTGGCACACTGTGGC CCAGGCTGGAGTGCAGTGCCACTATCTTGGCACACTGTGGC < 41bp 0.631247861985008 0.87989878057364 NA NA prediction 0.497301837177262 Functional Gain - MIR5689HG;GCNT2 ENSG00000111846 UTR5 Human protein_coding chr6:10493088 chr6:10493086 . . 0 19 hm6Am_associated_SNPs_2114 0 0 0 0 2 MIR5689HG;GCNT2 chr6:10493053 3'AG 10493053 Downstream 34bp
920 chr6 10493086 10493086 1 + G C rs76154123 10493088 + 10493068 10493108 41 CCAGGCTGGAGTGCAGTGGCACTATCTTGGCACACTGTGGC CCAGGCTGGAGTGCAGTGCCACTATCTTGGCACACTGTGGC < 41bp 0.631247861985008 0.87989878057364 NA NA prediction 0.497301837177262 Functional Gain - MIR5689HG;GCNT2 ENSG00000111846 UTR5 Human protein_coding chr6:10493088 chr6:10493086 . . 0 19 hm6Am_associated_SNPs_2114 0 0 0 0 2 MIR5689HG;GCNT2 chr6:10493164 5'GT 10493164 Upstream 79bp
921 chr2 181846810 181846810 1 + G A CESC 181846812 + 181846792 181846832 41 CCGATGATGAGAGCCCCAGCACCAGCAGTGGCAGTTCAGAT CCGATGATGAGAGCCCCAACACCAGCAGTGGCAGTTCAGAT < 41bp 0.51712635801384 0.765726136508807 NA NA prediction 0.497199556989935 Functional Gain - UBE2E3 ENSG00000170035 CDS Human protein_coding chr2:181846812 chr2:181846810 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_2117 0 0 0 0 1 UBE2E3 chr2:181846745 3'AG 181846745 Downstream 66bp
922 chr16 4557726 4557726 1 + G A LUSC 4557728 + 4557708 4557748 41 CCACAGCTGGCCACCACGGCACTTTACTTCACATACTCAGC CCACAGCTGGCCACCACGACACTTTACTTCACATACTCAGC < 41bp 0.513433027830849 0.76202173958202 NA NA prediction 0.497177423502343 Functional Gain - HMOX2 ENSG00000103415 CDS Human protein_coding chr16:4557728 chr16:4557726 nonsynonymous SNV 0.999 4 19 hm6Am_associated_SNPs_2118 0 0 1 0 1 HMOX2 chr16:4557714 3'AG 4557714 Downstream 13bp
923 chr11 60102438 60102438 1 + G A UCEC 60102440 + 60102420 60102460 41 GTCATCAACTTCTCCCAAGCAGAGAAACCCGAACCCACCAA GTCATCAACTTCTCCCAAACAGAGAAACCCGAACCCACCAA < 41bp 0.501756474885703 0.75028744528275 NA NA prediction 0.497061940794094 Functional Gain - MS4A6E ENSG00000166926 CDS Human protein_coding chr11:60102440 chr11:60102438 nonsynonymous SNV 0.034 0 19 hm6Am_associated_SNPs_2120 0 0 0 0 1 MS4A6E chr11:60102515 5'GT 60102515 Upstream 78bp
924 chr19 18882274 18882274 1 + G A COAD 18882276 + 18882256 18882296 41 CGGCTCTGCAGCAGTACCGCACTAGCGCCGGCTCCCCGGCC CGGCTCTGCAGCAGTACCACACTAGCGCCGGCTCCCCGGCC < 41bp 0.519678457531661 0.768200376552966 NA NA prediction 0.49704383804261 Functional Gain - CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18882276 chr19:18882274 nonsynonymous SNV 0.928 4 19 hm6Am_associated_SNPs_2121 0 0 0 0 2 CRTC1 chr19:18882252 3'AG 18882252 Downstream 23bp
925 chr19 18882274 18882274 1 + G A COAD 18882276 + 18882256 18882296 41 CGGCTCTGCAGCAGTACCGCACTAGCGCCGGCTCCCCGGCC CGGCTCTGCAGCAGTACCACACTAGCGCCGGCTCCCCGGCC < 41bp 0.519678457531661 0.768200376552966 NA NA prediction 0.49704383804261 Functional Gain - CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18882276 chr19:18882274 nonsynonymous SNV 0.928 4 19 hm6Am_associated_SNPs_2121 0 0 0 0 2 CRTC1 chr19:18882356 5'GT 18882356 Upstream 83bp
926 chr19 30164785 30164785 1 + G C LUSC 30164784 + 30164764 30164804 41 CAACACGGAGATCAACAGCCAGCGCATCGCGGCAGTGGAGA CAACACGGAGATCAACAGCCACCGCATCGCGGCAGTGGAGA < 41bp 0.507551770344331 0.755939598240917 NA NA prediction 0.496775655793172 Functional Gain - PLEKHF1 ENSG00000166289 CDS Human protein_coding chr19:30164784 chr19:30164785 nonsynonymous SNV 0.975 2 22 hm6Am_associated_SNPs_2124 0 0 0 0 1 PLEKHF1 chr19:30164731 3'AG 30164731 Downstream 55bp
927 chr1 87563566 87563566 1 + G C BLCA 87563565 + 87563545 87563585 41 GGTGGCTCAGACTGTGCTCCAGAGAAGCTCTGGCTTCAAAT GGTGGCTCAGACTGTGCTCCACAGAAGCTCTGGCTTCAAAT < 41bp 0.517001022958118 0.765224468358 NA NA prediction 0.496446890799764 Functional Gain - HS2ST1 ENSG00000153936;ENSG00000267561 CDS Human other chr1:87563565 chr1:87563566 nonsynonymous SNV 1.000 1 22 hm6Am_associated_SNPs_2129 0 0 1 0 2 HS2ST1 chr1:87563521 3'AG 87563521 Downstream 46bp
928 chr1 87563566 87563566 1 + G C BLCA 87563565 + 87563545 87563585 41 GGTGGCTCAGACTGTGCTCCAGAGAAGCTCTGGCTTCAAAT GGTGGCTCAGACTGTGCTCCACAGAAGCTCTGGCTTCAAAT < 41bp 0.517001022958118 0.765224468358 NA NA prediction 0.496446890799764 Functional Gain - HS2ST1 ENSG00000153936;ENSG00000267561 CDS Human other chr1:87563565 chr1:87563566 nonsynonymous SNV 1.000 1 22 hm6Am_associated_SNPs_2129 0 0 1 0 2 HS2ST1 chr1:87563618 5'GT 87563618 Upstream 53bp
929 chr3 136677019 136677019 1 + G T LUAD 136677021 + 136677001 136677041 41 TTCATGTGGTTTTTCTACGCATTGATTCCATGTTTGCTCAC TTCATGTGGTTTTTCTACTCATTGATTCCATGTTTGCTCAC < 41bp 0.346813608793311 0.748215109516032 NA NA prediction 0.496430219032064 Functional Gain - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136677021 chr3:136677019 nonsynonymous SNV 0.038 0 19 hm6Am_associated_SNPs_2130 0 0 1 0 1 IL20RB chr3:136677043 5'GT 136677043 Upstream 25bp
930 chr1 200860791 200860791 1 + G A UCEC 200860793 + 200860773 200860813 41 GAGGCTGGAGTGGAGGGCGCAGGGGCAGGCGGGCGGCGCCA GAGGCTGGAGTGGAGGGCACAGGGGCAGGCGGGCGGCGCCA < 41bp 0.49965382717281 0.748213042525864 NA NA prediction 0.496426085051729 Functional Gain - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200860793 chr1:200860791 synonymous SNV . 0 19 hm6Am_associated_SNPs_2131 0 0 0 0 1 C1orf106 chr1:200860829 5'GT 200860829 Upstream 39bp
931 chr14 100192977 100192977 1 + G A UCEC 100192979 + 100192959 100192999 41 GCGCTTCGGGCTGCAGGAGCAGGCCACACTCAAGCCACTGG GCGCTTCGGGCTGCAGGAACAGGCCACACTCAAGCCACTGG < 41bp 0.509508697617224 0.757690251854469 NA NA prediction 0.496363108474491 Functional Gain - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100192979 chr14:100192977 synonymous SNV . 0 19 hm6Am_associated_SNPs_2132 0 0 0 0 1 CYP46A1 chr14:100192894 3'AG 100192894 Downstream 84bp
932 chr11 67803796 67803796 1 + G C UCEC 67803798 + 67803778 67803818 41 ACATCGACATGACCAAGTGCATCTACTGCGGCTTCTGCCAG ACATCGACATGACCAAGTCCATCTACTGCGGCTTCTGCCAG < 41bp 0.641344944563082 0.889387658577583 NA NA prediction 0.496085428029002 Functional Gain - NDUFS8 ENSG00000110717 CDS Human protein_coding chr11:67803798 chr11:67803796 nonsynonymous SNV 0.999 5 19 hm6Am_associated_SNPs_2137 0 0 1 0 1 NDUFS8 chr11:67803720 3'AG 67803720 Downstream 77bp
933 chr3 119328379 119328379 1 + G A STAD 119328381 + 119328361 119328401 41 TGGGGGCCCACGTTGGGGGCATGGTGGGACAGCTCTTCGGA TGGGGGCCCACGTTGGGGACATGGTGGGACAGCTCTTCGGA < 41bp 0.522110180808225 0.77013204007421 NA NA prediction 0.49604371853197 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119328381 chr3:119328379 nonsynonymous SNV 0.998 5 19 hm6Am_associated_SNPs_2138 0 0 0 0 2 PLA1A chr3:119328315 3'AG 119328315 Downstream 65bp
934 chr3 119328379 119328379 1 + G A STAD 119328381 + 119328361 119328401 41 TGGGGGCCCACGTTGGGGGCATGGTGGGACAGCTCTTCGGA TGGGGGCCCACGTTGGGGACATGGTGGGACAGCTCTTCGGA < 41bp 0.522110180808225 0.77013204007421 NA NA prediction 0.49604371853197 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119328381 chr3:119328379 nonsynonymous SNV 0.998 5 19 hm6Am_associated_SNPs_2138 0 0 0 0 2 PLA1A chr3:119328423 5'GT 119328423 Upstream 45bp
935 chr22 42905075 42905075 1 + G A CESC 42905077 + 42905057 42905097 41 CAGCAGGGAGCTGTGTGCGCATTCCATCAGGAAGCTGCAGG CAGCAGGGAGCTGTGTGCACATTCCATCAGGAAGCTGCAGG < 41bp 0.497572772875949 0.747819428939463 NA NA prediction 0.495638857878926 Functional Gain - SERHL ENSG00000172250 ncRNA_exonic Human processed_transcript chr22:42905077 chr22:42905075 . . 0 19 hm6Am_associated_SNPs_2145 0 0 1 0 2 SERHL chr22:42905034 3'AG 42905034 Downstream 42bp
936 chr22 42905075 42905075 1 + G A CESC 42905077 + 42905057 42905097 41 CAGCAGGGAGCTGTGTGCGCATTCCATCAGGAAGCTGCAGG CAGCAGGGAGCTGTGTGCACATTCCATCAGGAAGCTGCAGG < 41bp 0.497572772875949 0.747819428939463 NA NA prediction 0.495638857878926 Functional Gain - SERHL ENSG00000172250 ncRNA_exonic Human processed_transcript chr22:42905077 chr22:42905075 . . 0 19 hm6Am_associated_SNPs_2145 0 0 1 0 2 SERHL chr22:42905116 5'GT 42905116 Upstream 42bp
937 chr9 124536573 124536573 1 + G A UCEC 124536575 + 124536555 124536595 41 GCCCCAATGCCCTGGACCGCACAGCCGCTTGGCTCTTGACC GCCCCAATGCCCTGGACCACACAGCCGCTTGGCTCTTGACC < 41bp 0.51119518072959 0.758981844278094 NA NA prediction 0.495573327097009 Functional Gain - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124536575 chr9:124536573 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_2147 0 0 0 0 1 DAB2IP chr9:124536539 3'AG 124536539 Downstream 35bp
938 chr4 515003 515003 1 + G T COAD 515005 + 514985 515025 41 CTGAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACAT CTGAGCTTGTCCCTGAGTTCACAAGTGGCCCAGTACGACAT < 41bp 0.338656996481371 0.747637554498123 NA NA prediction 0.495275108996247 Functional Gain - PIGG ENSG00000174227 CDS Human protein_coding chr4:515005 chr4:515003 nonsynonymous SNV 0.972 0 19 hm6Am_associated_SNPs_2150 0 0 1 3 3 PIGG chr4:515016 5'GT 515016 Upstream 14bp
939 chr4 515003 515003 1 + G T COAD 515005 + 514985 515025 41 CTGAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACAT CTGAGCTTGTCCCTGAGTTCACAAGTGGCCCAGTACGACAT < 41bp 0.338656996481371 0.747637554498123 NA NA prediction 0.495275108996247 Functional Gain - PIGG ENSG00000174227 CDS Human protein_coding chr4:515005 chr4:515003 nonsynonymous SNV 0.972 0 19 hm6Am_associated_SNPs_2150 0 0 1 3 3 PIGG chr4:515038 5'GT 515038 Upstream 36bp
940 chr4 515003 515003 1 + G T COAD 515005 + 514985 515025 41 CTGAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACAT CTGAGCTTGTCCCTGAGTTCACAAGTGGCCCAGTACGACAT < 41bp 0.338656996481371 0.747637554498123 NA NA prediction 0.495275108996247 Functional Gain - PIGG ENSG00000174227 CDS Human protein_coding chr4:515005 chr4:515003 nonsynonymous SNV 0.972 0 19 hm6Am_associated_SNPs_2150 0 0 1 3 3 PIGG chr4:515062 5'GT 515062 Upstream 60bp
941 chr5 157098784 157098784 1 + G A COAD 157098786 + 157098766 157098806 41 CGGCGTAGGGGGTCAGCCGCAGATCTGCTTTCCGCGGCCGA CGGCGTAGGGGGTCAGCCACAGATCTGCTTTCCGCGGCCGA < 41bp 0.491006147694932 0.747502339903488 NA NA prediction 0.495004679806975 Functional Gain - C5orf52 ENSG00000187658 CDS Human protein_coding chr5:157098786 chr5:157098784 synonymous SNV . 0 19 hm6Am_associated_SNPs_2154 0 0 0 0 1 C5orf52 chr5:157098834 5'GT 157098834 Upstream 51bp
942 chr6 37225710 37225710 1 + G T SARC 37225712 + 37225692 37225732 41 CAATGGCCGCTGAGAACAGCAAGCAGTTTTGGAAGAGGAGC CAATGGCCGCTGAGAACATCAAGCAGTTTTGGAAGAGGAGC < 41bp 0.330050556957817 0.74747591298836 NA NA prediction 0.49495182597672 Functional Gain - TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37225712 chr6:37225710 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2156 0 0 0 0 1 TBC1D22B chr6:37225749 5'GT 37225749 Upstream 40bp
943 chr19 33693776 33693776 1 + G A UCEC 33693778 + 33693758 33693798 41 CTGCAGTGGGAAGCTGGAGCAGCACACGGAGCGGCGTGGGG CTGCAGTGGGAAGCTGGAACAGCACACGGAGCGGCGTGGGG < 41bp 0.50971980099947 0.757185488334465 NA NA prediction 0.49493137466999 Functional Gain - LRP3 ENSG00000130881 CDS Human protein_coding chr19:33693778 chr19:33693776 synonymous SNV . 0 19 hm6Am_associated_SNPs_2157 0 0 1 0 1 LRP3 chr19:33693754 3'AG 33693754 Downstream 23bp
944 chr3 129043025 129043025 1 + G C rs9858960 129043027 + 129043007 129043047 41 CCTTTGTCCCCACCCAGGGCACCCTCCCTGCATGGCCCGAT CCTTTGTCCCCACCCAGGCCACCCTCCCTGCATGGCCCGAT < 41bp 0.63266337200105 0.879924600415831 NA NA prediction 0.494522456829563 Functional Gain - H1FX-AS1 ENSG00000206417 ncRNA_exonic Human antisense chr3:129043027 chr3:129043025 . . 0 19 hm6Am_associated_SNPs_2159 0 0 1 0 1 H1FX-AS1 chr3:129043024 3'AG 129043024 Downstream 2bp
945 chr11 71184686 71184686 1 + G A COAD 71184688 + 71184668 71184708 41 GCAGCCACCAAGTGCTGCGCAAAGCCAACACCAGGGTGGAT GCAGCCACCAAGTGCTGCACAAAGCCAACACCAGGGTGGAT < 41bp 0.506186937607596 0.75343362431655 NA NA prediction 0.494493373417908 Functional Gain - NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71184688 chr11:71184686 nonsynonymous SNV 0.993 5 19 hm6Am_associated_SNPs_2160 0 0 1 0 2 NADSYN1 chr11:71184615 3'AG 71184615 Downstream 72bp
946 chr11 71184686 71184686 1 + G A COAD 71184688 + 71184668 71184708 41 GCAGCCACCAAGTGCTGCGCAAAGCCAACACCAGGGTGGAT GCAGCCACCAAGTGCTGCACAAAGCCAACACCAGGGTGGAT < 41bp 0.506186937607596 0.75343362431655 NA NA prediction 0.494493373417908 Functional Gain - NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71184688 chr11:71184686 nonsynonymous SNV 0.993 5 19 hm6Am_associated_SNPs_2160 0 0 1 0 2 NADSYN1 chr11:71184732 5'GT 71184732 Upstream 47bp
947 chr10 12202965 12202965 1 + G C COAD 12202964 + 12202944 12202984 41 GGACCCGCACGTTCTTACCCAGTTGGAGGCCTTTGTTACTA GGACCCGCACGTTCTTACCCACTTGGAGGCCTTTGTTACTA < 41bp 0.486425000313866 0.747094632776201 NA NA prediction 0.494189265552403 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12202964 chr10:12202965 nonsynonymous SNV 0.966 1 22 hm6Am_associated_SNPs_2162 0 0 1 0 1 SEC61A2 chr10:12202929 3'AG 12202929 Downstream 37bp
948 chr7 103004612 103004612 1 + G T SARC 103004614 + 103004594 103004634 41 AGAGGTTTGTGAACCTTGGCATTGAGCCTCCCAAGGGCGTG AGAGGTTTGTGAACCTTGTCATTGAGCCTCCCAAGGGCGTG < 41bp 0.322902438591508 0.747054197932047 NA NA prediction 0.494108395864094 Functional Gain - PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103004614 chr7:103004612 nonsynonymous SNV 0.994 5 19 hm6Am_associated_SNPs_2163 0 0 1 0 1 PSMC2 chr7:103004590 3'AG 103004590 Downstream 23bp
949 chr9 36112356 36112356 1 + G A UCEC 36112358 + 36112338 36112378 41 TATGTGGGCAGAATGGGCGCACTTACCCCAGTGCCTGCATT TATGTGGGCAGAATGGGCACACTTACCCCAGTGCCTGCATT < 41bp 0.505492779256737 0.75250240220576 NA NA prediction 0.494019245898045 Functional Gain - RECK ENSG00000122707 CDS Human protein_coding chr9:36112358 chr9:36112356 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_2165 0 0 1 0 1 RECK chr9:36112302 3'AG 36112302 Downstream 55bp
950 chr10 124914595 124914595 1 + G A UCEC 124914597 + 124914577 124914617 41 CATGCGGCTCAAGTACCAGCACACCGGCGCCGTCCTGGACT CATGCGGCTCAAGTACCAACACACCGGCGCCGTCCTGGACT < 41bp 0.491768497044719 0.746977005977722 NA NA prediction 0.493954011955443 Functional Gain - BUB3 ENSG00000154473 CDS Human protein_coding chr10:124914597 chr10:124914595 synonymous SNV . 0 19 hm6Am_associated_SNPs_2166 0 0 1 0 1 BUB3 chr10:124914628 5'GT 124914628 Upstream 34bp
951 chr1 27268057 27268057 1 + G C LUAD 27268056 + 27268036 27268076 41 AGAAGGCGGAGCGGGCGGCCAGACTGGCCAAGGAAGCCAAG AGAAGGCGGAGCGGGCGGCCACACTGGCCAAGGAAGCCAAG < 41bp 0.498713346093484 0.746883620800498 NA NA prediction 0.493767241600997 Functional Gain - NUDC ENSG00000090273 CDS Human protein_coding chr1:27268056 chr1:27268057 nonsynonymous SNV 0.978 2 22 hm6Am_associated_SNPs_2168 0 0 1 0 1 NUDC chr1:27268151 5'GT 27268151 Upstream 95bp
952 chr6 116948877 116948877 1 + G A LGG 116948879 + 116948859 116948899 41 GCACAGATGAGACATACCGCATATTTCTTGCCCTCAAGCAG GCACAGATGAGACATACCACATATTTCTTGCCCTCAAGCAG < 41bp 0.516130474092198 0.762970156390038 NA NA prediction 0.493679364595681 Functional Gain - RSPH4A ENSG00000111834 CDS Human protein_coding chr6:116948879 chr6:116948877 nonsynonymous SNV 0.997 3 19 hm6Am_associated_SNPs_2171 0 0 0 0 1 RSPH4A chr6:116948792 3'AG 116948792 Downstream 86bp
953 chrX 129629169 129629169 1 - C T STAD 129629167 - 129629147 129629187 41 CGATCAGCCCGACTCCAAGCATCAGCTGAGTGTCCGCCAAC CGATCAGCCCGACTCCAAACATCAGCTGAGTGTCCGCCAAC < 41bp 0.514864044917287 0.761621960620187 NA NA prediction 0.4935158314058 Functional Gain - FAM45BP ENSG00000221930;ENSG00000229702 ncRNA_exonic Human other chrX:129629167 chrX:129629169 . . 0 19 hm6Am_associated_SNPs_2173 0 0 0 0 2 FAM45BP chrX:129629103 5'GT 129629103 Upstream 67bp
954 chrX 129629169 129629169 1 - C T STAD 129629167 - 129629147 129629187 41 CGATCAGCCCGACTCCAAGCATCAGCTGAGTGTCCGCCAAC CGATCAGCCCGACTCCAAACATCAGCTGAGTGTCCGCCAAC < 41bp 0.514864044917287 0.761621960620187 NA NA prediction 0.4935158314058 Functional Gain - FAM45BP ENSG00000221930;ENSG00000229702 ncRNA_exonic Human other chrX:129629167 chrX:129629169 . . 0 19 hm6Am_associated_SNPs_2173 0 0 0 0 2 FAM45BP chrX:129629180 3'AG 129629180 Downstream 12bp
955 chr19 10556972 10556972 1 + G A UCEC 10556974 + 10556954 10556994 41 GAGCCCAGGACTCGTGCTGCACGCCGGGGCGGCCACCAGCC GAGCCCAGGACTCGTGCTACACGCCGGGGCGGCCACCAGCC < 41bp 0.522234008013923 0.768838439953003 NA NA prediction 0.49320886387816 Functional Gain - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10556974 chr19:10556972 synonymous SNV . 0 19 hm6Am_associated_SNPs_2177 0 0 0 0 1 PDE4A chr19:10556894 3'AG 10556894 Downstream 79bp
956 chr3 35770951 35770951 1 + G T COAD 35770953 + 35770933 35770973 41 GCCAGGTTGCTCCCAGCAGCACCAGCTACATCCTCCTTCCA GCCAGGTTGCTCCCAGCATCACCAGCTACATCCTCCTTCCA < 41bp 0.679488361388207 0.926058446514377 NA NA prediction 0.49314017025234 Functional Gain - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35770953 chr3:35770951 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2179 0 0 0 0 1 ARPP21 chr3:35771028 5'GT 35771028 Upstream 78bp
957 chr2 27454914 27454914 1 + G C OV 27454913 + 27454893 27454933 41 GCTTTGTGGGCTGGTTATTCAGTGGACCGCCTGTATGAGCT GCTTTGTGGGCTGGTTATTCACTGGACCGCCTGTATGAGCT < 41bp 0.506198929397721 0.752752048939959 NA NA prediction 0.493106239084476 Functional Gain - CAD ENSG00000084774 CDS Human protein_coding chr2:27454913 chr2:27454914 nonsynonymous SNV 0.887 1 22 hm6Am_associated_SNPs_2180 0 0 1 0 1 CAD chr2:27454848 3'AG 27454848 Downstream 67bp
958 chr14 24675283 24675283 1 + G A COAD 24675285 + 24675265 24675305 41 AAGCAGAAGGTTATGGTGGCAGTCAAGATCATCTCAAAGAA AAGCAGAAGGTTATGGTGACAGTCAAGATCATCTCAAAGAA < 41bp 0.508990383142901 0.755530172622301 NA NA prediction 0.493079578958801 Functional Gain - TSSK4 ENSG00000139908 CDS Human protein_coding chr14:24675285 chr14:24675283 nonsynonymous SNV 0.998 4 19 hm6Am_associated_SNPs_2184 0 0 0 0 1 TSSK4 chr14:24675354 5'GT 24675354 Upstream 72bp
959 chr16 88872496 88872496 1 + G C rs143149360 88872495 + 88872475 88872515 41 GCGACGGCAGATCTTCAGCCAGAAGCTGGTGGAGCATGTCA GCGACGGCAGATCTTCAGCCACAAGCTGGTGGAGCATGTCA < 41bp 0.48821103176674 0.746467124862193 NA NA prediction 0.492934249724385 Functional Gain - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88872495 chr16:88872496 nonsynonymous SNV 0.882 0 22 hm6Am_associated_SNPs_2187 1 0 1 0 2 CDT1 chr16:88872429 3'AG 88872429 Downstream 68bp
960 chr16 88872496 88872496 1 + G C rs143149360 88872495 + 88872475 88872515 41 GCGACGGCAGATCTTCAGCCAGAAGCTGGTGGAGCATGTCA GCGACGGCAGATCTTCAGCCACAAGCTGGTGGAGCATGTCA < 41bp 0.48821103176674 0.746467124862193 NA NA prediction 0.492934249724385 Functional Gain - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88872495 chr16:88872496 nonsynonymous SNV 0.882 0 22 hm6Am_associated_SNPs_2187 1 0 1 0 2 CDT1 chr16:88872529 5'GT 88872529 Upstream 34bp
961 chr20 56285522 56285522 1 - C A GBM 56285520 - 56285500 56285540 41 AGTCTCCTGCGAAACCAGGCAATGGGTGATCCATCTTGGGG AGTCTCCTGCGAAACCAGTCAATGGGTGATCCATCTTGGGG < 41bp 0.678160447394952 0.924607115163509 NA NA prediction 0.492893335537114 Functional Gain - NKILA;PMEPA1 ENSG00000124225 splicing Human protein_coding chr20:56285520 chr20:56285522 . . 0 19 hm6Am_associated_SNPs_2188 0 0 0 0 1 PMEPA1 chr20:56285516 5'GT 56285516 Upstream 7bp
962 chr1 1267465 1267465 1 + G A GBM 1267467 + 1267447 1267487 41 CCTTCCCCTCCTTCTTCCGCACCGTGCCCAGCGACCGTGTG CCTTCCCCTCCTTCTTCCACACCGTGCCCAGCGACCGTGTG < 41bp 0.509781336848676 0.756214974418251 NA NA prediction 0.49286727513915 Functional Gain - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1267467 chr1:1267465 nonsynonymous SNV 0.974 5 19 hm6Am_associated_SNPs_2189 0 0 0 0 1 TAS1R3 chr1:1267404 3'AG 1267404 Downstream 62bp
963 chr11 111958608 111958608 1 + G C BLCA 111958607 + 111958587 111958627 41 TGCTTCGAACTCCAGTGGTCAGACCTGCTCATATCTCAGCA TGCTTCGAACTCCAGTGGTCACACCTGCTCATATCTCAGCA < 41bp 0.523092850332018 0.769437643439268 NA NA prediction 0.4926895862145 Functional Gain - SDHD ENSG00000204370;ENSG00000255292 CDS Human other chr11:111958607 chr11:111958608 nonsynonymous SNV 0.962 2 22 hm6Am_associated_SNPs_2194 0 0 1 0 2 SDHD chr11:111958581 3'AG 111958581 Downstream 28bp
964 chr11 111958608 111958608 1 + G C BLCA 111958607 + 111958587 111958627 41 TGCTTCGAACTCCAGTGGTCAGACCTGCTCATATCTCAGCA TGCTTCGAACTCCAGTGGTCACACCTGCTCATATCTCAGCA < 41bp 0.523092850332018 0.769437643439268 NA NA prediction 0.4926895862145 Functional Gain - SDHD ENSG00000204370;ENSG00000255292 CDS Human other chr11:111958607 chr11:111958608 nonsynonymous SNV 0.962 2 22 hm6Am_associated_SNPs_2194 0 0 1 0 2 SDHD chr11:111958697 5'GT 111958697 Upstream 90bp
965 chrX 200930 200930 1 + G A STAD 200932 + 200912 200952 41 AACGAGGACTGGATGTCGGCACTGTGTCCCCGGCTCTGGGA AACGAGGACTGGATGTCGACACTGTGTCCCCGGCTCTGGGA < 41bp 0.489755937212802 0.74620490507247 NA NA prediction 0.492409810144939 Functional Gain - PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:200932 chrX:200930 nonsynonymous SNV 0.082 0 19 hm6Am_associated_SNPs_2198 0 0 1 0 2 PLCXD1 chrX:200834 3'AG 200834 Downstream 97bp
966 chrX 200930 200930 1 + G A STAD 200932 + 200912 200952 41 AACGAGGACTGGATGTCGGCACTGTGTCCCCGGCTCTGGGA AACGAGGACTGGATGTCGACACTGTGTCCCCGGCTCTGGGA < 41bp 0.489755937212802 0.74620490507247 NA NA prediction 0.492409810144939 Functional Gain - PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:200932 chrX:200930 nonsynonymous SNV 0.082 0 19 hm6Am_associated_SNPs_2198 0 0 1 0 2 PLCXD1 chrX:200981 5'GT 200981 Upstream 52bp
967 chr2 113956371 113956371 1 + G A rs2276561 113956373 + 113956353 113956393 41 CAACTTGGCTGCGGCCACGCACTCCGCGCCGCCCTTCCCCG CAACTTGGCTGCGGCCACACACTCCGCGCCGCCCTTCCCCG < 41bp 0.52004726538388 0.766084160967939 NA NA prediction 0.492073791168119 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113956373 chr2:113956371 synonymous SNV . 0 19 hm6Am_associated_SNPs_2201 0 0 0 0 2 PSD4 chr2:113956317 3'AG 113956317 Downstream 55bp
968 chr2 113956371 113956371 1 + G A rs2276561 113956373 + 113956353 113956393 41 CAACTTGGCTGCGGCCACGCACTCCGCGCCGCCCTTCCCCG CAACTTGGCTGCGGCCACACACTCCGCGCCGCCCTTCCCCG < 41bp 0.52004726538388 0.766084160967939 NA NA prediction 0.492073791168119 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113956373 chr2:113956371 synonymous SNV . 0 19 hm6Am_associated_SNPs_2201 0 0 0 0 2 PSD4 chr2:113956461 5'GT 113956461 Upstream 91bp
969 chr16 2124338 2124338 1 + G A STAD 2124340 + 2124320 2124360 41 TCTGGTGGTGAAGCTCACGCACATCTCAGCCACAGCCAGCA TCTGGTGGTGAAGCTCACACACATCTCAGCCACAGCCAGCA < 41bp 0.501167652020574 0.747081917665318 NA NA prediction 0.491828531289487 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2124340 chr16:2124338 synonymous SNV . 0 19 hm6Am_associated_SNPs_2205 0 0 1 0 1 TSC2 chr16:2124390 5'GT 2124390 Upstream 53bp
970 chr19 12969432 12969432 1 + G C OV 12969431 + 12969411 12969451 41 GAACTTGATCCTCCGCAACCAGATCCAGCAGGCCTTTGTGG GAACTTGATCCTCCGCAACCACATCCAGCAGGCCTTTGTGG < 41bp 0.480883841739108 0.745818934487607 NA NA prediction 0.491637868975214 Functional Gain - MAST1 ENSG00000105613 CDS Human protein_coding chr19:12969431 chr19:12969432 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_2210 0 0 0 0 1 MAST1 chr19:12969345 3'AG 12969345 Downstream 88bp
971 chr3 186435490 186435490 1 + G C LUSC 186435489 + 186435469 186435509 41 TCAAAACCAAAGTAACAACCAGTTTGTATTGTACCGCATAA TCAAAACCAAAGTAACAACCACTTTGTATTGTACCGCATAA < 41bp 0.493951560611528 0.745801559019405 NA NA prediction 0.49160311803881 Functional Gain - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186435489 chr3:186435490 nonsynonymous SNV 0.507 3 22 hm6Am_associated_SNPs_2212 0 0 0 0 1 KNG1 chr3:186435526 5'GT 186435526 Upstream 37bp
972 chr12 133294630 133294630 1 + G A STAD 133294632 + 133294612 133294652 41 CGGAACTACATCCACCGCGCAGATGCCAGGCAGGAGGAGGA CGGAACTACATCCACCGCACAGATGCCAGGCAGGAGGAGGA < 41bp 0.491714730671145 0.745796197278935 NA NA prediction 0.491592394557871 Functional Gain - PGAM5 ENSG00000247077 CDS Human protein_coding chr12:133294632 chr12:133294630 nonsynonymous SNV 0.065 4 19 hm6Am_associated_SNPs_2213 0 0 1 0 3 PGAM5 chr12:133294573 3'AG 133294573 Downstream 58bp
973 chr12 133294630 133294630 1 + G A STAD 133294632 + 133294612 133294652 41 CGGAACTACATCCACCGCGCAGATGCCAGGCAGGAGGAGGA CGGAACTACATCCACCGCACAGATGCCAGGCAGGAGGAGGA < 41bp 0.491714730671145 0.745796197278935 NA NA prediction 0.491592394557871 Functional Gain - PGAM5 ENSG00000247077 CDS Human protein_coding chr12:133294632 chr12:133294630 nonsynonymous SNV 0.065 4 19 hm6Am_associated_SNPs_2213 0 0 1 0 3 PGAM5 chr12:133294576 3'AG 133294576 Downstream 55bp
974 chr12 133294630 133294630 1 + G A STAD 133294632 + 133294612 133294652 41 CGGAACTACATCCACCGCGCAGATGCCAGGCAGGAGGAGGA CGGAACTACATCCACCGCACAGATGCCAGGCAGGAGGAGGA < 41bp 0.491714730671145 0.745796197278935 NA NA prediction 0.491592394557871 Functional Gain - PGAM5 ENSG00000247077 CDS Human protein_coding chr12:133294632 chr12:133294630 nonsynonymous SNV 0.065 4 19 hm6Am_associated_SNPs_2213 0 0 1 0 3 PGAM5 chr12:133294706 5'GT 133294706 Upstream 77bp
975 chr19 41268834 41268834 1 + G A CESC 41268836 + 41268816 41268856 41 CGATGACTCAGGCGCCCCGCATTATGCACCACATGCCGGGC CGATGACTCAGGCGCCCCACATTATGCACCACATGCCGGGC < 41bp 0.525675654373861 0.771452088856661 NA NA prediction 0.491552868965601 Functional Gain - SNRPA ENSG00000077312 CDS Human protein_coding chr19:41268836 chr19:41268834 nonsynonymous SNV 0.906 2 19 hm6Am_associated_SNPs_2214 0 0 1 0 1 SNRPA chr19:41268806 3'AG 41268806 Downstream 29bp
976 chr19 18279586 18279586 1 + G A COAD 18279588 + 18279568 18279608 41 TCCCGCACCACGAGGAACGCACTTGGTACGTGGGCAAGATC TCCCGCACCACGAGGAACACACTTGGTACGTGGGCAAGATC < 41bp 0.522623404903359 0.768391831037287 NA NA prediction 0.491536852267855 Functional Gain - PIK3R2 ENSG00000105647;ENSG00000268173 CDS Human other chr19:18279588 chr19:18279586 nonsynonymous SNV 0.995 1 19 hm6Am_associated_SNPs_2215 0 0 1 0 1 PIK3R2 chr19:18279536 3'AG 18279536 Downstream 51bp
977 chr19 14024046 14024046 1 + G C BLCA 14024045 + 14024025 14024065 41 GGAGAGGCTGGCGCTCTATCAGACAGCAATTGAAAGCGCCA GGAGAGGCTGGCGCTCTATCACACAGCAATTGAAAGCGCCA < 41bp 0.518756334143747 0.764467764938647 NA NA prediction 0.4914228615898 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024045 chr19:14024046 nonsynonymous SNV 0.000 0 22 hm6Am_associated_SNPs_2217 0 0 0 0 1 CC2D1A chr19:14024115 5'GT 14024115 Upstream 70bp
978 chrX 134986654 134986654 1 + G A UCEC 134986656 + 134986636 134986676 41 ATGCTGCAGTCACTCACAGCATTTGTGAAGAGAGGATAAAT ATGCTGCAGTCACTCACAACATTTGTGAAGAGAGGATAAAT < 41bp 0.505922394139148 0.751560348179086 NA NA prediction 0.491275908079877 Functional Gain - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134986656 chrX:134986654 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_2218 0 0 0 0 2 SAGE1 chrX:134986636 3'AG 134986636 Downstream 19bp
979 chrX 134986654 134986654 1 + G A UCEC 134986656 + 134986636 134986676 41 ATGCTGCAGTCACTCACAGCATTTGTGAAGAGAGGATAAAT ATGCTGCAGTCACTCACAACATTTGTGAAGAGAGGATAAAT < 41bp 0.505922394139148 0.751560348179086 NA NA prediction 0.491275908079877 Functional Gain - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134986656 chrX:134986654 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_2218 0 0 0 0 2 SAGE1 chrX:134986728 5'GT 134986728 Upstream 75bp
980 chr19 18276991 18276991 1 + G A LUSC 18276993 + 18276973 18277013 41 CTGCAGATGAAGCGTACTGCAATTGAGGCCTTCAATGAGAC CTGCAGATGAAGCGTACTACAATTGAGGCCTTCAATGAGAC < 41bp 0.516670294379986 0.762241817661764 NA NA prediction 0.491143046563557 Functional Gain - PIK3R2 ENSG00000105647;ENSG00000268173 CDS Human protein_coding chr19:18276993 chr19:18276991 nonsynonymous SNV 0.262 3 19 hm6Am_associated_SNPs_2220 0 0 1 0 2 PIK3R2 chr19:18276921 3'AG 18276921 Downstream 71bp
981 chr19 18276991 18276991 1 + G A LUSC 18276993 + 18276973 18277013 41 CTGCAGATGAAGCGTACTGCAATTGAGGCCTTCAATGAGAC CTGCAGATGAAGCGTACTACAATTGAGGCCTTCAATGAGAC < 41bp 0.516670294379986 0.762241817661764 NA NA prediction 0.491143046563557 Functional Gain - PIK3R2 ENSG00000105647;ENSG00000268173 CDS Human other chr19:18276993 chr19:18276991 nonsynonymous SNV 0.262 3 19 hm6Am_associated_SNPs_2220 0 0 1 0 2 PIK3R2 chr19:18276970 3'AG 18276970 Downstream 22bp
982 chr1 155582887 155582887 1 + G C OV 155582886 + 155582866 155582906 41 TTTCCCCTTGGCTCCAGGCCAGTCCCTTCCTGATTCCCTGA TTTCCCCTTGGCTCCAGGCCACTCCCTTCCTGATTCCCTGA < 41bp 0.494816389233988 0.745346831245479 NA NA prediction 0.490693662490957 Functional Gain - MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582886 chr1:155582887 nonsynonymous SNV 0.999 0 22 hm6Am_associated_SNPs_2225 0 0 0 0 1 MSTO1 chr1:155582840 3'AG 155582840 Downstream 48bp
983 chr17 36876025 36876025 1 + G A COAD 36876027 + 36876007 36876047 41 CCCATCAGCAGCCTCCCCGCACTCTTCGACCAGACAGCCTC CCCATCAGCAGCCTCCCCACACTCTTCGACCAGACAGCCTC < 41bp 0.509243761822548 0.754584965511193 NA NA prediction 0.49068240737729 Functional Gain - MLLT6 ENSG00000108292 CDS Human other chr17:36876027 chr17:36876025 nonsynonymous SNV 0.460 0 19 hm6Am_associated_SNPs_2226 0 0 1 0 1 MLLT6 chr17:36876003 3'AG 36876003 Downstream 23bp
984 chrX 152037328 152037328 1 + G T LUSC 152037330 + 152037310 152037350 41 TTCTTGTTCTCCCGCCAGGCATTTCACATCACCAATGATGA TTCTTGTTCTCCCGCCAGTCATTTCACATCACCAATGATGA < 41bp 0.337724554774502 0.745306974375445 NA NA prediction 0.490613948750889 Functional Gain - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152037330 chrX:152037328 nonsynonymous SNV 0.837 5 19 hm6Am_associated_SNPs_2228 0 0 0 0 1 NSDHL chrX:152037328 3'AG 152037328 Downstream 1bp
985 chr4 2695363 2695363 1 + G C LUSC 2695362 + 2695342 2695382 41 GACCACAGACACTCGGCCCCAGCCGCCCCGAGGAATAGCCC GACCACAGACACTCGGCCCCACCCGCCCCGAGGAATAGCCC < 41bp 0.495405028548566 0.745214023763401 NA NA prediction 0.490428047526801 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2695362 chr4:2695363 nonsynonymous SNV 0.000 1 22 hm6Am_associated_SNPs_2233 0 0 0 0 1 FAM193A chr4:2695313 3'AG 2695313 Downstream 51bp
986 chr10 94826026 94826026 1 + G A COAD 94826028 + 94826008 94826048 41 GCTACCGCACCGCCCTGCGCACCTTCGAGCTCGACGTAAGT GCTACCGCACCGCCCTGCACACCTTCGAGCTCGACGTAAGT < 41bp 0.505435731242169 0.750521939443069 NA NA prediction 0.4901724164018 Functional Gain - CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94826028 chr10:94826026 nonsynonymous SNV 0.930 2 19 hm6Am_associated_SNPs_2237 0 0 0 0 1 CYP26C1 chr10:94826042 5'GT 94826042 Upstream 17bp
987 chr13 114498127 114498127 1 + G T BRCA 114498129 + 114498109 114498149 41 CTTCTGTTGCAGCTGGTGGCAGCGATCGTGTTTATCAGTTT CTTCTGTTGCAGCTGGTGTCAGCGATCGTGTTTATCAGTTT < 41bp 0.328927535385909 0.745082081000468 NA NA prediction 0.490164162000937 Functional Gain - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114498129 chr13:114498127 nonsynonymous SNV 0.021 2 19 hm6Am_associated_SNPs_2238 0 0 0 0 2 TMEM255B chr13:114498121 3'AG 114498121 Downstream 7bp
988 chr13 114498127 114498127 1 + G T BRCA 114498129 + 114498109 114498149 41 CTTCTGTTGCAGCTGGTGGCAGCGATCGTGTTTATCAGTTT CTTCTGTTGCAGCTGGTGTCAGCGATCGTGTTTATCAGTTT < 41bp 0.328927535385909 0.745082081000468 NA NA prediction 0.490164162000937 Functional Gain - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114498129 chr13:114498127 nonsynonymous SNV 0.021 2 19 hm6Am_associated_SNPs_2238 0 0 0 0 2 TMEM255B chr13:114498210 5'GT 114498210 Upstream 84bp
989 chr3 112969456 112969456 1 + G A BRCA 112969458 + 112969438 112969478 41 CCGTCCAGAAGCCCGGAGGCACTGTGATCTTGGGCTGCGTG CCGTCCAGAAGCCCGGAGACACTGTGATCTTGGGCTGCGTG < 41bp 0.507734061561199 0.752765130923905 NA NA prediction 0.490062138725411 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:112969458 chr3:112969456 nonsynonymous SNV 0.992 3 19 hm6Am_associated_SNPs_2240 0 0 0 0 1 BOC chr3:112969402 3'AG 112969402 Downstream 55bp
990 chrX 99919785 99919785 1 + G A UCEC 99919787 + 99919767 99919807 41 TTAGAGATGAGATGCCACGCACTACCATTCATCACTAGTGG TTAGAGATGAGATGCCACACACTACCATTCATCACTAGTGG < 41bp 0.529291560989709 0.774247836403028 NA NA prediction 0.489912550826637 Functional Gain - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99919787 chrX:99919785 nonsynonymous SNV 0.960 0 19 hm6Am_associated_SNPs_2243 0 0 0 0 1 SRPX2 chrX:99919771 3'AG 99919771 Downstream 15bp
991 chr22 23492285 23492285 1 + G T UCEC 23492287 + 23492267 23492307 41 CTGTTTGCAGCTCAGGGAGCACTTCCACGGGCAGGTCAGCG CTGTTTGCAGCTCAGGGATCACTTCCACGGGCAGGTCAGCG < 41bp 0.313109102232257 0.744929888228285 NA NA prediction 0.48985977645657 Functional Gain - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23492287 chr22:23492285 nonsynonymous SNV 0.991 0 19 hm6Am_associated_SNPs_2244 0 0 0 0 2 RAB36 chr22:23492250 3'AG 23492250 Downstream 36bp
992 chr22 23492285 23492285 1 + G T UCEC 23492287 + 23492267 23492307 41 CTGTTTGCAGCTCAGGGAGCACTTCCACGGGCAGGTCAGCG CTGTTTGCAGCTCAGGGATCACTTCCACGGGCAGGTCAGCG < 41bp 0.313109102232257 0.744929888228285 NA NA prediction 0.48985977645657 Functional Gain - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23492287 chr22:23492285 nonsynonymous SNV 0.991 0 19 hm6Am_associated_SNPs_2244 0 0 0 0 2 RAB36 chr22:23492341 5'GT 23492341 Upstream 57bp
993 chr17 7311985 7311985 1 + G C BLCA 7311984 + 7311964 7312004 41 CGCCACCTACGTGCAGAACCAGAGCGAGGACTGCCTGTACC CGCCACCTACGTGCAGAACCACAGCGAGGACTGCCTGTACC < 41bp 0.489522828160747 0.744859476547523 NA NA prediction 0.489718953095047 Functional Gain - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7311984 chr17:7311985 nonsynonymous SNV 1.000 2 22 hm6Am_associated_SNPs_2245 0 0 1 0 1 NLGN2 chr17:7312031 5'GT 7312031 Upstream 47bp
994 chr9 136501785 136501785 1 + G A UCEC 136501787 + 136501767 136501807 41 CGTGGCGAGCTTGAGAACGCAGATCTCGTGGTGCTCTGGAC CGTGGCGAGCTTGAGAACACAGATCTCGTGGTGCTCTGGAC < 41bp 0.487578098351352 0.744844342375457 NA NA prediction 0.489688684750914 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136501787 chr9:136501785 nonsynonymous SNV 0.023 3 19 hm6Am_associated_SNPs_2246 0 0 0 0 1 DBH chr9:136501832 5'GT 136501832 Upstream 48bp
995 chr4 1209830 1209830 1 + G A GBM 1209832 + 1209812 1209852 41 GTTGTGCTCGTTGAGGCCGCAGTGCAGGGTCACGCAGTCGC GTTGTGCTCGTTGAGGCCACAGTGCAGGGTCACGCAGTCGC < 41bp 0.495812484485878 0.744761141615548 NA NA prediction 0.489522283231096 Functional Gain - CTBP1 ENSG00000159692 CDS Human protein_coding chr4:1209832 chr4:1209830 synonymous SNV . 0 19 hm6Am_associated_SNPs_2248 0 0 0 0 1 CTBP1-AS chr4:1209747 3'AG 1209747 Downstream 84bp
996 chr19 2271493 2271493 1 + G C BLCA 2271492 + 2271472 2271512 41 AGGTGGGCGAGGGAATAGTCAGAGGGATCACAATCTTTCAG AGGTGGGCGAGGGAATAGTCACAGGGATCACAATCTTTCAG < 41bp 0.516911919562782 0.761663342388333 NA NA prediction 0.489502845651101 Functional Gain - OAZ1 ENSG00000104904 CDS Human protein_coding chr19:2271492 chr19:2271493 nonsynonymous SNV 0.997 2 22 hm6Am_associated_SNPs_2249 0 0 1 0 1 OAZ1 chr19:2271529 5'GT 2271529 Upstream 37bp
997 chr3 186915546 186915546 1 + G T UCEC 186915548 + 186915528 186915568 41 GCTGAGCCCTGGTTGGAAGCAGTACCTGGAATTGCATGCTT GCTGAGCCCTGGTTGGAATCAGTACCTGGAATTGCATGCTT < 41bp 0.321717669867917 0.744718616983362 NA NA prediction 0.489437233966723 Functional Gain - RTP1 ENSG00000175077 CDS Human protein_coding chr3:186915548 chr3:186915546 nonsynonymous SNV 0.999 3 19 hm6Am_associated_SNPs_2250 0 0 0 0 1 RTP1 chr3:186915575 5'GT 186915575 Upstream 30bp
998 chr1 19992872 19992872 1 + G T HNSC 19992874 + 19992854 19992894 41 CCATATGCTTCACCTACTGCAGGATCCTGCTAGCTGCCCGC CCATATGCTTCACCTACTTCAGGATCCTGCTAGCTGCCCGC < 41bp 0.343162687826266 0.744568504213304 NA NA prediction 0.489137008426608 Functional Gain - HTR6 ENSG00000158748 CDS Human protein_coding chr1:19992874 chr1:19992872 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2255 0 0 0 0 1 HTR6 chr1:19992960 5'GT 19992960 Upstream 89bp
999 chr9 135866269 135866269 1 + G A LUSC 135866271 + 135866251 135866291 41 CCCTGCAGGTGAGAAGCCGCACAAGTGCCAGGTGTGCGGAA CCCTGCAGGTGAGAAGCCACACAAGTGCCAGGTGTGCGGAA < 41bp 0.517995978796727 0.7625632226382 NA NA prediction 0.489134487682946 Functional Gain - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135866271 chr9:135866269 synonymous SNV . 0 19 hm6Am_associated_SNPs_2256 0 0 1 0 1 GFI1B chr9:135866259 3'AG 135866259 Downstream 11bp
1000 chr14 23846490 23846490 1 + G A DLBC 23846492 + 23846472 23846512 41 TCGAGATCGCCGGGACCGGCACCCTGAGGAGGGGGTAGTTG TCGAGATCGCCGGGACCGACACCCTGAGGAGGGGGTAGTTG < 41bp 0.538001598218187 0.782448681711304 NA NA prediction 0.488894166986233 Functional Gain - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23846492 chr14:23846490 synonymous SNV . 0 19 hm6Am_associated_SNPs_2260 0 0 0 0 1 CMTM5 chr14:23846586 5'GT 23846586 Upstream 97bp
1001 chr2 220333642 220333642 1 + G A rs148131894 220333644 + 220333624 220333664 41 CGGGGGTCTGCACTCACTGCACATTGCCCATGTGGGCAGCG CGGGGGTCTGCACTCACTACACATTGCCCATGTGGGCAGCG < 41bp 0.50276422600982 0.747192660045881 NA NA prediction 0.488856868072124 Functional Gain - SPEG ENSG00000072195 CDS Human protein_coding chr2:220333644 chr2:220333642 synonymous SNV . 0 19 hm6Am_associated_SNPs_2262 0 0 0 0 1 SPEG chr2:220333581 3'AG 220333581 Downstream 62bp
1002 chr4 129440000 129440000 1 + G T rs146284875 129440002 + 129439982 129440022 41 TTGTTCATAAGCTTTGTGGCACTGTCGGCAGGATGAGGGGA TTGTTCATAAGCTTTGTGTCACTGTCGGCAGGATGAGGGGA < 41bp 0.670244435667487 0.914664150999919 NA NA prediction 0.488839430664864 Functional Gain - LOC100507487 ENSG00000251432 ncRNA_exonic Human lincRNA chr4:129440002 chr4:129440000 . . 0 19 hm6Am_associated_SNPs_2263 0 0 0 0 1 LOC100507487 chr4:129439911 3'AG 129439911 Downstream 90bp
1003 chrX 54584913 54584913 1 + G C LUAD 54584912 + 54584892 54584932 41 CACCAATCCGAACCGTCATCAGATGGGGTGGGCTAAACGCA CACCAATCCGAACCGTCATCACATGGGGTGGGCTAAACGCA < 41bp 0.488548431097431 0.744406315900875 NA NA prediction 0.48881263180175 Functional Gain - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54584912 chrX:54584913 nonsynonymous SNV 0.987 1 22 hm6Am_associated_SNPs_2265 0 0 1 0 1 GNL3L chrX:54584869 3'AG 54584869 Downstream 45bp
1004 chr1 159171328 159171328 1 - C T rs184704448 159171326 - 159171306 159171346 41 CATCTCCTCAGGACTCCCGCACTCATCACTTTCCCATTGCT CATCTCCTCAGGACTCCCACACTCATCACTTTCCCATTGCT < 41bp 0.504178166549893 0.748529645178162 NA NA prediction 0.488702957256538 Functional Gain - CADM3-AS1 ENSG00000225670 ncRNA_exonic Human antisense chr1:159171326 chr1:159171328 . . 0 19 hm6Am_associated_SNPs_2266 0 0 0 0 1 CADM3-AS1 chr1:159171411 3'AG 159171411 Downstream 84bp
1005 chr2 220493960 220493960 1 + G A UCEC 220493962 + 220493942 220493982 41 GCCCCCCACCTCTGCCCGGCACACCAGGAGAAAGAGGAAGA GCCCCCCACCTCTGCCCGACACACCAGGAGAAAGAGGAAGA < 41bp 0.490497157096919 0.744338658103847 NA NA prediction 0.488677316207694 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220493962 chr2:220493960 synonymous SNV . 0 19 hm6Am_associated_SNPs_2267 0 0 0 0 1 SLC4A3 chr2:220493866 3'AG 220493866 Downstream 95bp
1006 chr7 102087055 102087055 1 + G A UCEC 102087057 + 102087037 102087077 41 CACGGTGCTGGTGGCCGTGCACCTGTTCGCCCTCCTCATCA CACGGTGCTGGTGGCCGTACACCTGTTCGCCCTCCTCATCA < 41bp 0.505279570440898 0.749598219194934 NA NA prediction 0.488637297508072 Functional Gain - ORAI2 ENSG00000160991 CDS Human protein_coding chr7:102087057 chr7:102087055 synonymous SNV . 0 19 hm6Am_associated_SNPs_2268 0 0 1 0 1 ORAI2 chr7:102086960 3'AG 102086960 Downstream 96bp
1007 chr1 229438689 229438689 1 + G A OV 229438691 + 229438671 229438711 41 CTGAGGTCACCGCGGCGCGCACAGGCCCCGAACGCTCAGGA CTGAGGTCACCGCGGCGCACACAGGCCCCGAACGCTCAGGA < 41bp 0.523403075765833 0.767675149905617 NA NA prediction 0.488544148279567 Functional Gain - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229438691 chr1:229438689 nonsynonymous SNV 0.003 0 19 hm6Am_associated_SNPs_2270 0 0 1 0 2 RAB4A chr1:229438609 3'AG 229438609 Downstream 81bp
1008 chr1 229438689 229438689 1 + G A OV 229438691 + 229438671 229438711 41 CTGAGGTCACCGCGGCGCGCACAGGCCCCGAACGCTCAGGA CTGAGGTCACCGCGGCGCACACAGGCCCCGAACGCTCAGGA < 41bp 0.523403075765833 0.767675149905617 NA NA prediction 0.488544148279567 Functional Gain - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229438691 chr1:229438689 nonsynonymous SNV 0.003 0 19 hm6Am_associated_SNPs_2270 0 0 1 0 2 RAB4A chr1:229438736 5'GT 229438736 Upstream 48bp
1009 chr3 129813301 129813301 1 + G A rs4610271 129813303 + 129813283 129813323 41 CCACCAGAAGCATTTCCAGCACATCCAGGTCTGCATCCCCT CCACCAGAAGCATTTCCAACACATCCAGGTCTGCATCCCCT < 41bp 0.515350067636071 0.759620306575943 NA NA prediction 0.488540477879744 Functional Gain - ALG1L2 ENSG00000251287 ncRNA_exonic Human protein_coding chr3:129813303 chr3:129813301 . . 0 19 hm6Am_associated_SNPs_2271 0 0 0 0 3 ALG1L2 chr3:129813246 3'AG 129813246 Downstream 56bp
1010 chr3 129813301 129813301 1 + G A rs4610271 129813303 + 129813283 129813323 41 CCACCAGAAGCATTTCCAGCACATCCAGGTCTGCATCCCCT CCACCAGAAGCATTTCCAACACATCCAGGTCTGCATCCCCT < 41bp 0.515350067636071 0.759620306575943 NA NA prediction 0.488540477879744 Functional Gain - ALG1L2 ENSG00000251287 ncRNA_exonic Human protein_coding chr3:129813303 chr3:129813301 . . 0 19 hm6Am_associated_SNPs_2271 0 0 0 0 3 ALG1L2 chr3:129813310 5'GT 129813310 Upstream 10bp
1011 chr3 129813301 129813301 1 + G A rs4610271 129813303 + 129813283 129813323 41 CCACCAGAAGCATTTCCAGCACATCCAGGTCTGCATCCCCT CCACCAGAAGCATTTCCAACACATCCAGGTCTGCATCCCCT < 41bp 0.515350067636071 0.759620306575943 NA NA prediction 0.488540477879744 Functional Gain - ALG1L2 ENSG00000251287 ncRNA_exonic Human protein_coding chr3:129813303 chr3:129813301 . . 0 19 hm6Am_associated_SNPs_2271 0 0 0 0 3 ALG1L2 chr3:129813356 5'GT 129813356 Upstream 56bp
1012 chr11 119340543 119340543 1 + G T UCEC 119340545 + 119340525 119340565 41 GTTCCCACCTGGTGGGAAGCACTGTGCAGGTTCGTGGGGAT GTTCCCACCTGGTGGGAATCACTGTGCAGGTTCGTGGGGAT < 41bp 0.67371272609238 0.917962252218916 NA NA prediction 0.488499052253072 Functional Gain - USP2-AS1 ENSG00000245248 ncRNA_exonic Human antisense chr11:119340545 chr11:119340543 . . 0 19 hm6Am_associated_SNPs_2272 0 0 0 0 1 USP2-AS1 chr11:119340520 3'AG 119340520 Downstream 24bp
1013 chr8 9414074 9414074 1 + G A COAD 9414076 + 9414056 9414096 41 GACGCGGCAAACGTAAATGCAAAGGACATGGCCGGCCGGAA GACGCGGCAAACGTAAATACAAAGGACATGGCCGGCCGGAA < 41bp 0.521324742064986 0.765389327340185 NA NA prediction 0.488129170550398 Functional Gain - TNKS ENSG00000173273 CDS Human protein_coding chr8:9414076 chr8:9414074 nonsynonymous SNV 0.999 1 19 hm6Am_associated_SNPs_2278 0 0 1 0 1 TNKS chr8:9414122 5'GT 9414122 Upstream 49bp
1014 chr19 46024603 46024603 1 + G A ACC 46024605 + 46024585 46024625 41 GGGCCCCCTCCACCCCCAGCACTTCCCACCTGGTCGGTCCC GGGCCCCCTCCACCCCCAACACTTCCCACCTGGTCGGTCCC < 41bp 0.541405439875918 0.785442079136949 NA NA prediction 0.488073278522063 Functional Gain - VASP ENSG00000125753 CDS Human protein_coding chr19:46024605 chr19:46024603 nonsynonymous SNV 0.567 0 19 hm6Am_associated_SNPs_2279 0 0 1 0 2 VASP chr19:46024580 3'AG 46024580 Downstream 24bp
1015 chr19 46024603 46024603 1 + G A ACC 46024605 + 46024585 46024625 41 GGGCCCCCTCCACCCCCAGCACTTCCCACCTGGTCGGTCCC GGGCCCCCTCCACCCCCAACACTTCCCACCTGGTCGGTCCC < 41bp 0.541405439875918 0.785442079136949 NA NA prediction 0.488073278522063 Functional Gain - VASP ENSG00000125753 CDS Human protein_coding chr19:46024605 chr19:46024603 nonsynonymous SNV 0.567 0 19 hm6Am_associated_SNPs_2279 0 0 1 0 2 VASP chr19:46024664 5'GT 46024664 Upstream 62bp
1016 chr4 81188259 81188259 1 + G C BLCA 81188258 + 81188238 81188278 41 GGACCGGCAGCCTCTACTGCAGAGTGGGCATCGGTTTCCAT GGACCGGCAGCCTCTACTGCACAGTGGGCATCGGTTTCCAT < 41bp 0.50415824567102 0.748159586773452 NA NA prediction 0.488002682204866 Functional Gain - FGF5 ENSG00000138675 CDS Human protein_coding chr4:81188258 chr4:81188259 nonsynonymous SNV 1.000 5 22 hm6Am_associated_SNPs_2281 0 0 0 0 1 FGF5 chr4:81188333 5'GT 81188333 Upstream 75bp
1017 chr3 50295020 50295020 1 + G A COAD 50295022 + 50295002 50295042 41 CACCAAGGAGATCTACACGCACTTCACGTGCGCCACCGACA CACCAAGGAGATCTACACACACTTCACGTGCGCCACCGACA < 41bp 0.49404483007533 0.743997395991401 NA NA prediction 0.487994791982801 Functional Gain - GNAI2 ENSG00000114353 CDS Human protein_coding chr3:50295022 chr3:50295020 synonymous SNV . 0 19 hm6Am_associated_SNPs_2282 0 0 1 0 1 GNAI2 chr3:50294932 3'AG 50294932 Downstream 89bp
1018 chr22 50635718 50635718 1 + G A BLCA 50635720 + 50635700 50635740 41 CTGCTGCTGAAGGTGTCTGCACACATCACCGAGCAGCTGGG CTGCTGCTGAAGGTGTCTACACACATCACCGAGCAGCTGGG < 41bp 0.496628042375037 0.743965361457972 NA NA prediction 0.487930722915944 Functional Gain - TRABD ENSG00000170638 CDS Human protein_coding chr22:50635720 chr22:50635718 nonsynonymous SNV 0.346 4 19 hm6Am_associated_SNPs_2283 0 0 1 0 2 TRABD chr22:50635670 3'AG 50635670 Downstream 49bp
1019 chr22 50635718 50635718 1 + G A BLCA 50635720 + 50635700 50635740 41 CTGCTGCTGAAGGTGTCTGCACACATCACCGAGCAGCTGGG CTGCTGCTGAAGGTGTCTACACACATCACCGAGCAGCTGGG < 41bp 0.496628042375037 0.743965361457972 NA NA prediction 0.487930722915944 Functional Gain - TRABD ENSG00000170638 CDS Human protein_coding chr22:50635720 chr22:50635718 nonsynonymous SNV 0.346 4 19 hm6Am_associated_SNPs_2283 0 0 1 0 2 TRABD chr22:50635780 5'GT 50635780 Upstream 63bp
1020 chr12 122337663 122337663 1 + G A LGG 122337665 + 122337645 122337685 41 ACAAAGAGGCCATGAGCCGCAAACTGGGTCAGAGTGAGAGC ACAAAGAGGCCATGAGCCACAAACTGGGTCAGAGTGAGAGC < 41bp 0.524579463361415 0.768518142723366 NA NA prediction 0.487877358723903 Functional Gain - PSMD9 ENSG00000110801 CDS Human protein_coding chr12:122337665 chr12:122337663 nonsynonymous SNV 0.019 0 19 hm6Am_associated_SNPs_2286 0 0 1 0 1 PSMD9 chr12:122337751 5'GT 122337751 Upstream 89bp
1021 chr11 63987045 63987045 1 + G A UCEC 63987047 + 63987027 63987067 41 AGGTGGGGGAGCCGGCTGGCACAGACCCAGGGCTGGACGAC AGGTGGGGGAGCCGGCTGACACAGACCCAGGGCTGGACGAC < 41bp 0.538514428405795 0.782354747361506 NA NA prediction 0.487680637911423 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63987047 chr11:63987045 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_2291 0 0 1 0 2 FERMT3 chr11:63986996 3'AG 63986996 Downstream 50bp
1022 chr11 63987045 63987045 1 + G A UCEC 63987047 + 63987027 63987067 41 AGGTGGGGGAGCCGGCTGGCACAGACCCAGGGCTGGACGAC AGGTGGGGGAGCCGGCTGACACAGACCCAGGGCTGGACGAC < 41bp 0.538514428405795 0.782354747361506 NA NA prediction 0.487680637911423 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63987047 chr11:63987045 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_2291 0 0 1 0 2 FERMT3 chr11:63987130 5'GT 63987130 Upstream 86bp
1023 chr16 31366594 31366594 1 + G A UCEC 31366596 + 31366576 31366616 41 ATGACCAGGACCAGGGCAGCACTCCTCCTGTTCACAGGTGA ATGACCAGGACCAGGGCAACACTCCTCCTGTTCACAGGTGA < 41bp 0.496399966095704 0.743838236776244 NA NA prediction 0.487676473552487 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31366596 chr16:31366594 nonsynonymous SNV 0.003 0 19 hm6Am_associated_SNPs_2292 0 0 0 0 1 ITGAX chr16:31366612 5'GT 31366612 Upstream 19bp
1024 chr3 128976319 128976319 1 + G A STAD 128976321 + 128976301 128976341 41 CCTGTCCTATAGTACCACGCACTAGGGCTCCTGTACCATGT CCTGTCCTATAGTACCACACACTAGGGCTCCTGTACCATGT < 41bp 0.491138249544173 0.743695739342134 NA NA prediction 0.487391478684269 Functional Gain - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128976321 chr3:128976319 nonsynonymous SNV 0.049 4 19 hm6Am_associated_SNPs_2295 0 0 1 0 1 COPG1 chr3:128976313 3'AG 128976313 Downstream 7bp
1025 chr3 157296161 157296161 1 + G A rs187905437 157296163 + 157296143 157296183 41 CTTGGTGTGGTTTTAAAGGCACCAGCTGCTACGTGTCACAA CTTGGTGTGGTTTTAAAGACACCAGCTGCTACGTGTCACAA < 41bp 0.496879990174685 0.743621719727004 NA NA prediction 0.487243439454007 Functional Gain - PQLC2L ENSG00000174899 UTR3 Human protein_coding chr3:157296163 chr3:157296161 . . 0 19 hm6Am_associated_SNPs_2297 0 0 0 1 1 PQLC2L chr3:157296068 3'AG 157296068 Downstream 94bp
1026 chr8 2050535 2050535 1 + G C OV 2050534 + 2050514 2050554 41 AATGGCGTGGGGAAGCCCTCAGACACGTCGGAGCCTGTGCT AATGGCGTGGGGAAGCCCTCACACACGTCGGAGCCTGTGCT < 41bp 0.502466189273806 0.745946707112238 NA NA prediction 0.486961035676864 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2050534 chr8:2050535 nonsynonymous SNV 0.004 0 22 hm6Am_associated_SNPs_2300 0 0 0 0 2 MYOM2 chr8:2050457 3'AG 2050457 Downstream 79bp
1027 chr8 2050535 2050535 1 + G C OV 2050534 + 2050514 2050554 41 AATGGCGTGGGGAAGCCCTCAGACACGTCGGAGCCTGTGCT AATGGCGTGGGGAAGCCCTCACACACGTCGGAGCCTGTGCT < 41bp 0.502466189273806 0.745946707112238 NA NA prediction 0.486961035676864 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2050534 chr8:2050535 nonsynonymous SNV 0.004 0 22 hm6Am_associated_SNPs_2300 0 0 0 0 2 MYOM2 chr8:2050571 5'GT 2050571 Upstream 37bp
1028 chr5 68485525 68485525 1 + G A UCEC 68485527 + 68485507 68485547 41 TCCGGAGGGGAAGGCCGGGCAGGCGGGCCACCGCAGGTCGC TCCGGAGGGGAAGGCCGGACAGGCGGGCCACCGCAGGTCGC < 41bp 0.535392711845354 0.778842815338431 NA NA prediction 0.486900206986155 Functional Gain - CENPH ENSG00000153044 CDS Human protein_coding chr5:68485527 chr5:68485525 nonsynonymous SNV 0.003 0 19 hm6Am_associated_SNPs_2303 0 0 1 0 1 CENPH chr5:68485595 5'GT 68485595 Upstream 71bp
1029 chr16 89246648 89246648 1 + G C LIHC 89246650 + 89246630 89246670 41 TGGGCAGCGTCATCTACAGCATCCAGGGACCCGGCGTGGAT TGGGCAGCGTCATCTACACCATCCAGGGACCCGGCGTGGAT < 41bp 0.382381971772863 0.743351531786254 NA NA prediction 0.486703063572507 Functional Gain - CDH15 ENSG00000129910 CDS Human protein_coding chr16:89246650 chr16:89246648 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2305 0 0 0 0 1 CDH15 chr16:89246608 3'AG 89246608 Downstream 41bp
1030 chr2 187351141 187351141 1 + G A LIHC 187351143 + 187351123 187351163 41 AACAGGCTCAGGCCGGGGGCAGCAAAAAGGCGGAGCAAAAA AACAGGCTCAGGCCGGGGACAGCAAAAAGGCGGAGCAAAAA < 41bp 0.511958408281712 0.755274474629616 NA NA prediction 0.486632132695809 Functional Gain - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187351143 chr2:187351141 nonsynonymous SNV 0.999 0 19 hm6Am_associated_SNPs_2306 0 0 1 0 1 ZC3H15 chr2:187351184 5'GT 187351184 Upstream 44bp
1031 chr6 398903 398903 1 + G T LUSC 398905 + 398885 398925 41 GAGTCCCCACAGAGCCAAGCATAAGGTCTGCCGAAGCCTTG GAGTCCCCACAGAGCCAATCATAAGGTCTGCCGAAGCCTTG < 41bp 0.321330476722553 0.743298706968293 NA NA prediction 0.486597413936586 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:398905 chr6:398903 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2307 0 0 0 0 2 IRF4 chr6:398828 3'AG 398828 Downstream 76bp
1032 chr6 398903 398903 1 + G T LUSC 398905 + 398885 398925 41 GAGTCCCCACAGAGCCAAGCATAAGGTCTGCCGAAGCCTTG GAGTCCCCACAGAGCCAATCATAAGGTCTGCCGAAGCCTTG < 41bp 0.321330476722553 0.743298706968293 NA NA prediction 0.486597413936586 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:398905 chr6:398903 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2307 0 0 0 0 2 IRF4 chr6:398935 5'GT 398935 Upstream 33bp
1033 chr20 3781713 3781713 1 + G C STAD 3781712 + 3781692 3781732 41 CCGCAGGGAAGCCTTTGCCCAGAGACCCAGCTCGGCCCCCG CCGCAGGGAAGCCTTTGCCCACAGACCCAGCTCGGCCCCCG < 41bp 0.509260302704965 0.752528129085711 NA NA prediction 0.486535652761491 Functional Gain - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3781712 chr20:3781713 nonsynonymous SNV 0.994 0 22 hm6Am_associated_SNPs_2308 0 0 1 0 2 CDC25B chr20:3781618 3'AG 3781618 Downstream 96bp
1034 chr20 3781713 3781713 1 + G C STAD 3781712 + 3781692 3781732 41 CCGCAGGGAAGCCTTTGCCCAGAGACCCAGCTCGGCCCCCG CCGCAGGGAAGCCTTTGCCCACAGACCCAGCTCGGCCCCCG < 41bp 0.509260302704965 0.752528129085711 NA NA prediction 0.486535652761491 Functional Gain - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3781712 chr20:3781713 nonsynonymous SNV 0.994 0 22 hm6Am_associated_SNPs_2308 0 0 1 0 2 CDC25B chr20:3781740 5'GT 3781740 Upstream 28bp
1035 chr12 20854329 20854329 1 + G C CESC 20854328 + 20854308 20854348 41 TCTGAAGAGCACCATCACTCAGATAGAGAGAAGGTTTGATA TCTGAAGAGCACCATCACTCACATAGAGAGAAGGTTTGATA < 41bp 0.499452759834568 0.743236900448729 NA NA prediction 0.486473800897457 Functional Gain - SLCO1C1 ENSG00000139155 CDS Human protein_coding chr12:20854328 chr12:20854329 nonsynonymous SNV 1.000 3 22 hm6Am_associated_SNPs_2311 0 0 1 0 2 SLCO1C1 chr12:20854252 3'AG 20854252 Downstream 78bp
1036 chr12 20854329 20854329 1 + G C CESC 20854328 + 20854308 20854348 41 TCTGAAGAGCACCATCACTCAGATAGAGAGAAGGTTTGATA TCTGAAGAGCACCATCACTCACATAGAGAGAAGGTTTGATA < 41bp 0.499452759834568 0.743236900448729 NA NA prediction 0.486473800897457 Functional Gain - SLCO1C1 ENSG00000139155 CDS Human protein_coding chr12:20854328 chr12:20854329 nonsynonymous SNV 1.000 3 22 hm6Am_associated_SNPs_2311 0 0 1 0 2 SLCO1C1 chr12:20854393 5'GT 20854393 Upstream 65bp
1037 chr22 20936960 20936960 1 + G T LUSC 20936962 + 20936942 20936982 41 CCAGCAGGTGCAGACCCCGCAGTCGATGCCCCCTCCCCCCC CCAGCAGGTGCAGACCCCTCAGTCGATGCCCCCTCCCCCCC < 41bp 0.338886896025816 0.743226887848608 NA NA prediction 0.486453775697216 Functional Gain - MED15 ENSG00000099917 CDS Human protein_coding chr22:20936962 chr22:20936960 synonymous SNV . 0 19 hm6Am_associated_SNPs_2313 0 0 1 0 4 MED15 chr22:20936898 3'AG 20936898 Downstream 63bp
1038 chr22 20936960 20936960 1 + G T LUSC 20936962 + 20936942 20936982 41 CCAGCAGGTGCAGACCCCGCAGTCGATGCCCCCTCCCCCCC CCAGCAGGTGCAGACCCCTCAGTCGATGCCCCCTCCCCCCC < 41bp 0.338886896025816 0.743226887848608 NA NA prediction 0.486453775697216 Functional Gain - MED15 ENSG00000099917 CDS Human protein_coding chr22:20936962 chr22:20936960 synonymous SNV . 0 19 hm6Am_associated_SNPs_2313 0 0 1 0 4 MED15 chr22:20936946 3'AG 20936946 Downstream 15bp
1039 chr22 20936960 20936960 1 + G T LUSC 20936962 + 20936942 20936982 41 CCAGCAGGTGCAGACCCCGCAGTCGATGCCCCCTCCCCCCC CCAGCAGGTGCAGACCCCTCAGTCGATGCCCCCTCCCCCCC < 41bp 0.338886896025816 0.743226887848608 NA NA prediction 0.486453775697216 Functional Gain - MED15 ENSG00000099917 CDS Human protein_coding chr22:20936962 chr22:20936960 synonymous SNV . 0 19 hm6Am_associated_SNPs_2313 0 0 1 0 4 MED15 chr22:20936949 3'AG 20936949 Downstream 12bp
1040 chr22 20936960 20936960 1 + G T LUSC 20936962 + 20936942 20936982 41 CCAGCAGGTGCAGACCCCGCAGTCGATGCCCCCTCCCCCCC CCAGCAGGTGCAGACCCCTCAGTCGATGCCCCCTCCCCCCC < 41bp 0.338886896025816 0.743226887848608 NA NA prediction 0.486453775697216 Functional Gain - MED15 ENSG00000099917 CDS Human protein_coding chr22:20936962 chr22:20936960 synonymous SNV . 0 19 hm6Am_associated_SNPs_2313 0 0 1 0 4 MED15 chr22:20937034 5'GT 20937034 Upstream 75bp
1041 chr4 57797989 57797989 1 + G C LUAD 57797991 + 57797971 57798011 41 GAAGCAGTGTCCAAAACTGCACTGGCATCACCTCCTGCTAC GAAGCAGTGTCCAAAACTCCACTGGCATCACCTCCTGCTAC < 41bp 0.447766390489985 0.743136327350273 NA NA prediction 0.486272654700546 Functional Gain - REST ENSG00000084093 CDS Human protein_coding chr4:57797991 chr4:57797989 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_2314 0 0 1 0 1 REST chr4:57797960 3'AG 57797960 Downstream 30bp
1042 chr5 177547183 177547183 1 + G A CESC 177547185 + 177547165 177547205 41 TCTCTTCCTGGCAGTGCCGCATTCGCCCCTCAGTGTTCAAG TCTCTTCCTGGCAGTGCCACATTCGCCCCTCAGTGTTCAAG < 41bp 0.519494563145261 0.762510904725002 NA NA prediction 0.486032683159481 Functional Gain - N4BP3 ENSG00000145911 CDS Human protein_coding chr5:177547185 chr5:177547183 nonsynonymous SNV 0.939 3 19 hm6Am_associated_SNPs_2317 0 0 0 0 1 N4BP3 chr5:177547179 3'AG 177547179 Downstream 5bp
1043 chr19 4769278 4769278 1 + G A UCEC 4769280 + 4769260 4769300 41 GCTGGTTTGCAGGTTGGCGCATGGACATTTTCCCAGAAAGG GCTGGTTTGCAGGTTGGCACATGGACATTTTCCCAGAAAGG < 41bp 0.489366387194177 0.742970824662555 NA NA prediction 0.48594164932511 Functional Gain - MIR7-3HG ENSG00000176840 ncRNA_exonic Human lincRNA chr19:4769280 chr19:4769278 . . 0 19 hm6Am_associated_SNPs_2321 0 0 0 0 1 MIR7-3HG chr19:4769363 5'GT 4769363 Upstream 86bp
1044 chr17 74077683 74077683 1 + G A rs143779733 74077685 + 74077665 74077705 41 CTCTTGGTGCCTGCAGAGGCACTGCTGTTGGCTGACGTGTG CTCTTGGTGCCTGCAGAGACACTGCTGTTGGCTGACGTGTG < 41bp 0.511393450568731 0.754310056892162 NA NA prediction 0.485833212646861 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74077685 chr17:74077683 nonsynonymous SNV 0.826 2 19 hm6Am_associated_SNPs_2323 0 0 0 0 2 ZACN chr17:74077626 3'AG 74077626 Downstream 58bp
1045 chr17 74077683 74077683 1 + G A rs143779733 74077685 + 74077665 74077705 41 CTCTTGGTGCCTGCAGAGGCACTGCTGTTGGCTGACGTGTG CTCTTGGTGCCTGCAGAGACACTGCTGTTGGCTGACGTGTG < 41bp 0.511393450568731 0.754310056892162 NA NA prediction 0.485833212646861 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74077685 chr17:74077683 nonsynonymous SNV 0.826 2 19 hm6Am_associated_SNPs_2323 0 0 0 0 2 ZACN chr17:74077681 3'AG 74077681 Downstream 3bp
1046 chr2 103095336 103095336 1 + G C BLCA 103095335 + 103095315 103095355 41 AGGCTGCCAGGCCTCATGCCAGAAAGCTGCCTCCTCATCCT AGGCTGCCAGGCCTCATGCCACAAAGCTGCCTCCTCATCCT < 41bp 0.514376559120086 0.75729030808204 NA NA prediction 0.485827497923908 Functional Gain - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103095335 chr2:103095336 nonsynonymous SNV 0.587 4 22 hm6Am_associated_SNPs_2324 0 0 0 0 1 SLC9A4 chr2:103095298 3'AG 103095298 Downstream 39bp
1047 chr4 4389391 4389391 1 + G A COAD 4389393 + 4389373 4389413 41 ACAATTTCGCAGAGAAGGGCACCAAGCAGCCGCTGCTGGAG ACAATTTCGCAGAGAAGGACACCAAGCAGCCGCTGCTGGAG < 41bp 0.525166962929936 0.768001612771797 NA NA prediction 0.485669299683723 Functional Gain - NSG1 ENSG00000168824 CDS Human protein_coding chr4:4389393 chr4:4389391 nonsynonymous SNV 0.998 0 19 hm6Am_associated_SNPs_2327 0 0 0 0 2 NSG1 chr4:4389331 3'AG 4389331 Downstream 61bp
1048 chr4 4389391 4389391 1 + G A COAD 4389393 + 4389373 4389413 41 ACAATTTCGCAGAGAAGGGCACCAAGCAGCCGCTGCTGGAG ACAATTTCGCAGAGAAGGACACCAAGCAGCCGCTGCTGGAG < 41bp 0.525166962929936 0.768001612771797 NA NA prediction 0.485669299683723 Functional Gain - NSG1 ENSG00000168824 CDS Human protein_coding chr4:4389393 chr4:4389391 nonsynonymous SNV 0.998 0 19 hm6Am_associated_SNPs_2327 0 0 0 0 2 NSG1 chr4:4389485 5'GT 4389485 Upstream 95bp
1049 chr9 138395457 138395457 1 + G A COAD 138395459 + 138395439 138395479 41 CCTGGAACAGACAGCCACGCACCTCCAGCTGGCCTTGAACT CCTGGAACAGACAGCCACACACCTCCAGCTGGCCTTGAACT < 41bp 0.514010946975619 0.756770790924998 NA NA prediction 0.485519687898758 Functional Gain - MRPS2 ENSG00000122140 CDS Human protein_coding chr9:138395459 chr9:138395457 synonymous SNV . 0 19 hm6Am_associated_SNPs_2329 0 0 1 0 1 MRPS2 chr9:138395388 3'AG 138395388 Downstream 70bp
1050 chr5 110075098 110075098 1 + G A rs73230112 110075100 + 110075080 110075120 41 GCAGTGTGCAGGGGCAGAGCAGTGGTGAGAAGCATGGGGAC GCAGTGTGCAGGGGCAGAACAGTGGTGAGAAGCATGGGGAC < 41bp 0.52845634594763 0.771180979585035 NA NA prediction 0.485449267274809 Functional Gain - SLC25A46 ENSG00000164209 CDS Human protein_coding chr5:110075100 chr5:110075098 nonsynonymous SNV 0.522 1 19 hm6Am_associated_SNPs_2331 0 0 1 0 1 SLC25A46 chr5:110075103 5'GT 110075103 Upstream 6bp
1051 chr16 842722 842722 1 + G A UCEC 842724 + 842704 842744 41 CCGCCTCTCCTCAGGTTCGCACCGTCCCTGCGGCAGCTGAA CCGCCTCTCCTCAGGTTCACACCGTCCCTGCGGCAGCTGAA < 41bp 0.514216663131732 0.756920642714986 NA NA prediction 0.485407959166507 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842724 chr16:842722 nonsynonymous SNV 0.017 0 19 hm6Am_associated_SNPs_2332 0 0 1 0 2 CHTF18 chr16:842718 3'AG 842718 Downstream 5bp
1052 chr16 842722 842722 1 + G A UCEC 842724 + 842704 842744 41 CCGCCTCTCCTCAGGTTCGCACCGTCCCTGCGGCAGCTGAA CCGCCTCTCCTCAGGTTCACACCGTCCCTGCGGCAGCTGAA < 41bp 0.514216663131732 0.756920642714986 NA NA prediction 0.485407959166507 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842724 chr16:842722 nonsynonymous SNV 0.017 0 19 hm6Am_associated_SNPs_2332 0 0 1 0 2 CHTF18 chr16:842811 5'GT 842811 Upstream 90bp
1053 chr5 175816386 175816386 1 + G A UCEC 175816388 + 175816368 175816408 41 TCTACTCCTTCCACCGGGGCAACAGCCAGCGCTCTCAGCTC TCTACTCCTTCCACCGGGACAACAGCCAGCGCTCTCAGCTC < 41bp 0.507217582323604 0.749878719305025 NA NA prediction 0.485322273962843 Functional Gain - HIGD2A ENSG00000146066 CDS Human protein_coding chr5:175816388 chr5:175816386 nonsynonymous SNV 0.245 2 19 hm6Am_associated_SNPs_2334 0 0 1 0 1 HIGD2A chr5:175816332 3'AG 175816332 Downstream 55bp
1054 chr22 42177763 42177763 1 + G A LIHC 42177765 + 42177745 42177785 41 GCCCTCACCTTGGCAAAGGCAGATTCTCCCAGGACTGCACT GCCCTCACCTTGGCAAAGACAGATTCTCCCAGGACTGCACT < 41bp 0.497619640244436 0.742649902277816 NA NA prediction 0.485299804555632 Functional Gain - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42177765 chr22:42177763 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_2335 0 0 0 2 2 MEI1 chr22:42177689 3'AG 42177689 Downstream 75bp
1055 chr22 42177763 42177763 1 + G A LIHC 42177765 + 42177745 42177785 41 GCCCTCACCTTGGCAAAGGCAGATTCTCCCAGGACTGCACT GCCCTCACCTTGGCAAAGACAGATTCTCCCAGGACTGCACT < 41bp 0.497619640244436 0.742649902277816 NA NA prediction 0.485299804555632 Functional Gain - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42177765 chr22:42177763 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_2335 0 0 0 2 2 MEI1 chr22:42177849 5'GT 42177849 Upstream 87bp
1056 chr2 233399868 233399868 1 + G A rs148939701 233399870 + 233399850 233399890 41 GCTGGAACCGAGTGGCCCGCACAGTGGACCGCCTCTGCCTG GCTGGAACCGAGTGGCCCACACAGTGGACCGCCTCTGCCTG < 41bp 0.530840648882195 0.773487480189742 NA NA prediction 0.485293662615094 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233399870 chr2:233399868 nonsynonymous SNV 0.999 5 19 hm6Am_associated_SNPs_2336 1 0 0 0 1 CHRND chr2:233399840 3'AG 233399840 Downstream 29bp
1057 chr7 44042214 44042214 1 + G A rs368403460 44042216 + 44042196 44042236 41 GGTAGATCCCAGCCCCCCGCATAGGTCCTTTTGCTGGAAAA GGTAGATCCCAGCCCCCCACATAGGTCCTTTTGCTGGAAAA < 41bp 0.513269831107341 0.755820808484071 NA NA prediction 0.485101954753461 Functional Gain - SPDYE1 ENSG00000136206 CDS Human protein_coding chr7:44042216 chr7:44042214 synonymous SNV . 0 19 hm6Am_associated_SNPs_2339 0 0 0 0 1 SPDYE1 chr7:44042189 3'AG 44042189 Downstream 26bp
1058 chr15 78758677 78758677 1 + G C rs2958720 78758676 + 78758656 78758696 41 AAAGCAGGAAAGCTCTCTCCAGTTAAAGTGCAGCCTAAGAA AAAGCAGGAAAGCTCTCTCCACTTAAAGTGCAGCCTAAGAA < 41bp 0.534201730501994 0.77672904696969 NA NA prediction 0.485054632935392 Functional Gain - IREB2 ENSG00000136381 CDS Human protein_coding chr15:78758676 chr15:78758677 nonsynonymous SNV . 0 22 hm6Am_associated_SNPs_2341 0 0 0 0 1 IREB2 chr15:78758613 3'AG 78758613 Downstream 65bp
1059 chr16 67202771 67202771 1 + G C HNSC 67202770 + 67202750 67202790 41 GAAAGCGGGGACAGGAGCCCAGAGAGTCTGCTGCCTCCGAT GAAAGCGGGGACAGGAGCCCACAGAGTCTGCTGCCTCCGAT < 41bp 0.528066801428534 0.770303395981794 NA NA prediction 0.48447318910652 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67202770 chr16:67202771 nonsynonymous SNV 0.929 0 22 hm6Am_associated_SNPs_2352 0 0 0 2 2 HSF4 chr16:67202734 3'AG 67202734 Downstream 38bp
1060 chr16 67202771 67202771 1 + G C HNSC 67202770 + 67202750 67202790 41 GAAAGCGGGGACAGGAGCCCAGAGAGTCTGCTGCCTCCGAT GAAAGCGGGGACAGGAGCCCACAGAGTCTGCTGCCTCCGAT < 41bp 0.528066801428534 0.770303395981794 NA NA prediction 0.48447318910652 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67202770 chr16:67202771 nonsynonymous SNV 0.929 0 22 hm6Am_associated_SNPs_2352 0 0 0 2 2 HSF4 chr16:67202839 5'GT 67202839 Upstream 69bp
1061 chr16 69353290 69353290 1 + G T STAD 69353292 + 69353272 69353312 41 TGTGGTTCTCTGTTGCAGGCAAGCGCACCCCCTGGCGGGGG TGTGGTTCTCTGTTGCAGTCAAGCGCACCCCCTGGCGGGGG < 41bp 0.311451429095017 0.742227365334534 NA NA prediction 0.484454730669069 Functional Gain - VPS4A ENSG00000132612;ENSG00000260914 CDS Human other chr16:69353292 chr16:69353290 nonsynonymous SNV 0.942 5 19 hm6Am_associated_SNPs_2353 0 0 1 0 1 VPS4A chr16:69353290 3'AG 69353290 Downstream 1bp
1062 chr4 128703770 128703770 1 + G A UCEC 128703772 + 128703752 128703792 41 CTGTCGCGAGAAGTGGCGGCATCGAGACCATCGCCAATGAG CTGTCGCGAGAAGTGGCGACATCGAGACCATCGCCAATGAG < 41bp 0.530634437968397 0.772828530967573 NA NA prediction 0.484388185998352 Functional Gain - HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128703772 chr4:128703770 nonsynonymous SNV 0.997 1 19 hm6Am_associated_SNPs_2357 0 0 0 0 1 HSPA4L chr4:128703812 5'GT 128703812 Upstream 43bp
1063 chr1 161197053 161197053 1 + G A GBM 161197055 + 161197035 161197075 41 CTCTTTTCCTCAGGTGGCGCACACTATACACATGAGTGCCC CTCTTTTCCTCAGGTGGCACACACTATACACATGAGTGCCC < 41bp 0.510530551784389 0.75268656708433 NA NA prediction 0.484312030599881 Functional Gain - TOMM40L ENSG00000158882 CDS Human protein_coding chr1:161197055 chr1:161197053 synonymous SNV . 0 19 hm6Am_associated_SNPs_2359 0 0 1 0 2 TOMM40L chr1:161197048 3'AG 161197048 Downstream 6bp
1064 chr1 161197053 161197053 1 + G A GBM 161197055 + 161197035 161197075 41 CTCTTTTCCTCAGGTGGCGCACACTATACACATGAGTGCCC CTCTTTTCCTCAGGTGGCACACACTATACACATGAGTGCCC < 41bp 0.510530551784389 0.75268656708433 NA NA prediction 0.484312030599881 Functional Gain - TOMM40L ENSG00000158882 CDS Human protein_coding chr1:161197055 chr1:161197053 synonymous SNV . 0 19 hm6Am_associated_SNPs_2359 0 0 1 0 2 TOMM40L chr1:161197140 5'GT 161197140 Upstream 88bp
1065 chr6 129807629 129807629 1 - C T rs2229848 129807627 - 129807607 129807647 41 CCCCTGTTGAGGAGTATTGCATAATAGGCCTGCAACAGCAA CCCCTGTTGAGGAGTATTACATAATAGGCCTGCAACAGCAA < 41bp 0.491366526689816 0.742152562959025 NA NA prediction 0.484305125918051 Functional Gain - LAMA2 ENSG00000196569 CDS Human protein_coding chr6:129807627 chr6:129807629 nonsynonymous SNV 0.894 3 19 hm6Am_associated_SNPs_2360 1 0 0 0 2 LAMA2 chr6:129807537 5'GT 129807537 Upstream 93bp
1066 chr6 129807629 129807629 1 - C T rs2229848 129807627 - 129807607 129807647 41 CCCCTGTTGAGGAGTATTGCATAATAGGCCTGCAACAGCAA CCCCTGTTGAGGAGTATTACATAATAGGCCTGCAACAGCAA < 41bp 0.491366526689816 0.742152562959025 NA NA prediction 0.484305125918051 Functional Gain - LAMA2 ENSG00000196569 CDS Human protein_coding chr6:129807627 chr6:129807629 nonsynonymous SNV 0.894 3 19 hm6Am_associated_SNPs_2360 1 0 0 0 2 LAMA2 chr6:129807717 3'AG 129807717 Downstream 89bp
1067 chr12 52282447 52282447 1 + G A UCEC 52282449 + 52282429 52282469 41 CGGCTGGACATGTCTGAGGCACTGCCCTGCCCGGGCAAGGA CGGCTGGACATGTCTGAGACACTGCCCTGCCCGGGCAAGGA < 41bp 0.527644173330048 0.769764402525651 NA NA prediction 0.484240458391205 Functional Gain - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52282449 chr12:52282447 nonsynonymous SNV 0.695 1 19 hm6Am_associated_SNPs_2362 0 0 0 0 1 ANKRD33 chr12:52282352 3'AG 52282352 Downstream 96bp
1068 chr7 100865942 100865942 1 + G A ESCA 100865944 + 100865924 100865964 41 GGGCTGCCCGGCAGCGTCGCATCAACCGGCAGCTGGAGGCC GGGCTGCCCGGCAGCGTCACATCAACCGGCAGCTGGAGGCC < 41bp 0.511864556944275 0.753940756126327 NA NA prediction 0.484152398364105 Functional Gain - ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100865944 chr7:100865942 nonsynonymous SNV 0.686 2 19 hm6Am_associated_SNPs_2365 0 0 1 0 1 ZNHIT1 chr7:100865885 3'AG 100865885 Downstream 58bp
1069 chr6 45296486 45296486 1 + G A UCEC 45296488 + 45296468 45296508 41 CATCAAACAGCCTCTTCAGCACAGTGACACCATGTCAGCAA CATCAAACAGCCTCTTCAACACAGTGACACCATGTCAGCAA < 41bp 0.494038389742343 0.742042943592741 NA NA prediction 0.484085887185482 Functional Gain - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45296488 chr6:45296486 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2368 0 0 0 4 1 RUNX2 chr6:45296398 3'AG 45296398 Downstream 89bp
1070 chr3 46620773 46620773 1 + G C HNSC 46620772 + 46620752 46620792 41 CTCGGGGATACCTGGCCTTCAGAGATGACAGCATTTGGCCC CTCGGGGATACCTGGCCTTCACAGATGACAGCATTTGGCCC < 41bp 0.507089363609948 0.749126381708457 NA NA prediction 0.484074036197017 Functional Gain - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46620772 chr3:46620773 nonsynonymous SNV 0.042 0 22 hm6Am_associated_SNPs_2369 0 0 0 0 2 TDGF1 chr3:46620722 3'AG 46620722 Downstream 52bp
1071 chr3 46620773 46620773 1 + G C HNSC 46620772 + 46620752 46620792 41 CTCGGGGATACCTGGCCTTCAGAGATGACAGCATTTGGCCC CTCGGGGATACCTGGCCTTCACAGATGACAGCATTTGGCCC < 41bp 0.507089363609948 0.749126381708457 NA NA prediction 0.484074036197017 Functional Gain - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46620772 chr3:46620773 nonsynonymous SNV 0.042 0 22 hm6Am_associated_SNPs_2369 0 0 0 0 2 TDGF1 chr3:46620856 5'GT 46620856 Upstream 84bp
1072 chr19 52772872 52772872 1 + G A COAD 52772874 + 52772854 52772894 41 ATGGCGTGGAGATATGGCGCAACTGCGGCGCGTGAGTTTTC ATGGCGTGGAGATATGGCACAACTGCGGCGCGTGAGTTTTC < 41bp 0.526213680717032 0.768242049864872 NA NA prediction 0.484056738295679 Functional Gain - ZNF766 ENSG00000196214 CDS Human protein_coding chr19:52772874 chr19:52772872 synonymous SNV . 0 19 hm6Am_associated_SNPs_2370 0 0 0 0 1 ZNF766 chr19:52772884 5'GT 52772884 Upstream 13bp
1073 chr17 17041339 17041339 1 + G A rs146791467 17041341 + 17041321 17041361 41 CTTGAAGGCTGAAGAACAGCAGCTGCCCCCGCCGCTCTCCC CTTGAAGGCTGAAGAACAACAGCTGCCCCCGCCGCTCTCCC < 41bp 0.511986965701139 0.753946981338898 NA NA prediction 0.483920031275518 Functional Gain - MPRIP ENSG00000133030 CDS Human protein_coding chr17:17041341 chr17:17041339 synonymous SNV . 0 19 hm6Am_associated_SNPs_2371 0 0 1 0 1 MPRIP chr17:17041389 5'GT 17041389 Upstream 51bp
1074 chr3 53529226 53529226 1 + G T UCEC 53529228 + 53529208 53529248 41 GATGATGAAAAAAATGCAGCATCAACGGCAGCAGCAAGCGG GATGATGAAAAAAATGCATCATCAACGGCAGCAGCAAGCGG < 41bp 0.353260564943322 0.741951876731947 NA NA prediction 0.483903753463894 Functional Gain - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53529228 chr3:53529226 nonsynonymous SNV 0.997 1 19 hm6Am_associated_SNPs_2372 0 0 1 0 1 CACNA1D chr3:53529260 5'GT 53529260 Upstream 35bp
1075 chr8 145165310 145165310 1 + G A UCEC 145165312 + 145165292 145165332 41 AGAGCCTGAGCCTGCTGCGCACCTTCTCCTGCTGCTACCCG AGAGCCTGAGCCTGCTGCACACCTTCTCCTGCTGCTACCCG < 41bp 0.543912118223551 0.785839642317098 NA NA prediction 0.483855048187095 Functional Gain - WDR97 ENSG00000179698 CDS Human protein_coding chr8:145165312 chr8:145165310 nonsynonymous SNV 0.687 0 19 hm6Am_associated_SNPs_2373 0 0 0 0 1 WDR97 chr8:145165244 3'AG 145165244 Downstream 67bp
1076 chr3 52740219 52740219 1 + G A UCEC 52740221 + 52740201 52740241 41 CTCGGTCGCCCTCGCCTCGCAGCCTGCCACCCGCGCTCAGC CTCGGTCGCCCTCGCCTCACAGCCTGCCACCCGCGCTCAGC < 41bp 0.488914404366687 0.741843327398753 NA NA prediction 0.483686654797506 Functional Gain - SPCS1 ENSG00000114902 CDS Human protein_coding chr3:52740221 chr3:52740219 nonsynonymous SNV 0.014 1 19 hm6Am_associated_SNPs_2376 0 0 1 0 1 SPCS1 chr3:52740298 5'GT 52740298 Upstream 80bp
1077 chr4 134073842 134073842 1 + G A STAD 134073844 + 134073824 134073864 41 GCGGAGTACGGACACTGAGCACAACCCCTGCGGGGCCATCG GCGGAGTACGGACACTGAACACAACCCCTGCGGGGCCATCG < 41bp 0.529898233193682 0.771699328770044 NA NA prediction 0.483602191152725 Functional Gain - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134073844 chr4:134073842 synonymous SNV . 0 19 hm6Am_associated_SNPs_2377 0 0 1 0 1 PCDH10 chr4:134073926 5'GT 134073926 Upstream 85bp
1078 chr2 74742790 74742790 1 + G A PRAD 74742792 + 74742772 74742812 41 CCTTCTCTGGGACGCGCCGCATAGGCCACCCCTACCAAAAC CCTTCTCTGGGACGCGCCACATAGGCCACCCCTACCAAAAC < 41bp 0.54111921905946 0.782919273529314 NA NA prediction 0.48360010893971 Functional Gain - TLX2 ENSG00000115297 CDS Human protein_coding chr2:74742792 chr2:74742790 nonsynonymous SNV 1.000 5 19 hm6Am_associated_SNPs_2378 0 0 0 0 1 TLX2 chr2:74742760 3'AG 74742760 Downstream 31bp
1079 chr3 129195555 129195555 1 + G T ESCA 129195557 + 129195537 129195577 41 TCTACCAGCTTATTTTCAGCACAGTCCATGGGCTTTACAAG TCTACCAGCTTATTTTCATCACAGTCCATGGGCTTTACAAG < 41bp 0.35004649725922 0.741785585878327 NA NA prediction 0.483571171756655 Functional Gain - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129195557 chr3:129195555 nonsynonymous SNV 0.999 4 19 hm6Am_associated_SNPs_2379 0 0 1 0 2 IFT122 chr3:129195506 3'AG 129195506 Downstream 50bp
1080 chr3 129195555 129195555 1 + G T ESCA 129195557 + 129195537 129195577 41 TCTACCAGCTTATTTTCAGCACAGTCCATGGGCTTTACAAG TCTACCAGCTTATTTTCATCACAGTCCATGGGCTTTACAAG < 41bp 0.35004649725922 0.741785585878327 NA NA prediction 0.483571171756655 Functional Gain - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129195557 chr3:129195555 nonsynonymous SNV 0.999 4 19 hm6Am_associated_SNPs_2379 0 0 1 0 2 IFT122 chr3:129195644 5'GT 129195644 Upstream 90bp
1081 chr11 72537260 72537260 1 + G C UCEC 72537262 + 72537242 72537282 41 TGGAGGGAGCTGGTGGCAGCATCACCAGTGTGGACTTTGAC TGGAGGGAGCTGGTGGCACCATCACCAGTGTGGACTTTGAC < 41bp 0.391393790225431 0.741740540086461 NA NA prediction 0.483481080172922 Functional Gain - ATG16L2 ENSG00000168010 CDS Human protein_coding chr11:72537262 chr11:72537260 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_2380 0 0 1 0 2 ATG16L2 chr11:72537218 3'AG 72537218 Downstream 43bp
1082 chr11 72537260 72537260 1 + G C UCEC 72537262 + 72537242 72537282 41 TGGAGGGAGCTGGTGGCAGCATCACCAGTGTGGACTTTGAC TGGAGGGAGCTGGTGGCACCATCACCAGTGTGGACTTTGAC < 41bp 0.391393790225431 0.741740540086461 NA NA prediction 0.483481080172922 Functional Gain - ATG16L2 ENSG00000168010 CDS Human protein_coding chr11:72537262 chr11:72537260 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_2380 0 0 1 0 2 ATG16L2 chr11:72537288 5'GT 72537288 Upstream 29bp
1083 chr16 613326 613326 1 + G A UCEC 613328 + 613308 613348 41 CGGGCTCATGCCGCGTGGGCACAGGGGCGAGGGCGCGGTCT CGGGCTCATGCCGCGTGGACACAGGGGCGAGGGCGCGGTCT < 41bp 0.527108117247697 0.768798205070396 NA NA prediction 0.483380175645399 Functional Gain - PRR35 ENSG00000161992 CDS Human protein_coding chr16:613328 chr16:613326 nonsynonymous SNV 0.008 3 19 hm6Am_associated_SNPs_2383 0 0 0 0 1 PRR35 chr16:613256 3'AG 613256 Downstream 71bp
1084 chr8 69243476 69243476 1 + G A UCEC 69243478 + 69243458 69243498 41 CAGCCGCGCGTTCTCCCTGCACTCTCTTCGCGGTCCCATCT CAGCCGCGCGTTCTCCCTACACTCTCTTCGCGGTCCCATCT < 41bp 0.509547861917518 0.751172912023305 NA NA prediction 0.483250100211575 Functional Gain - C8orf34 ENSG00000165084 CDS Human other chr8:69243478 chr8:69243476 nonsynonymous SNV 0.002 1 19 hm6Am_associated_SNPs_2385 0 0 1 0 1 C8orf34 chr8:69243574 5'GT 69243574 Upstream 99bp
1085 chr20 23346376 23346376 1 + G A CESC 23346378 + 23346358 23346398 41 GCCGTCCGCGCTCAAGACGCACATGAGGTACGCGGGGAGCC GCCGTCCGCGCTCAAGACACACATGAGGTACGCGGGGAGCC < 41bp 0.530791967906998 0.772380288724118 NA NA prediction 0.48317664163424 Functional Gain - GZF1 ENSG00000125812 CDS Human protein_coding chr20:23346378 chr20:23346376 synonymous SNV . 0 19 hm6Am_associated_SNPs_2386 0 0 0 0 1 GZF1 chr20:23346384 5'GT 23346384 Upstream 9bp
1086 chr12 132400463 132400463 1 + G A UCEC 132400465 + 132400445 132400485 41 CACCCGAGCACTCTCCCCGCACTTCCGGGCTGGGCTGCCGC CACCCGAGCACTCTCCCCACACTTCCGGGCTGGGCTGCCGC < 41bp 0.490906479268183 0.741477722518469 NA NA prediction 0.482955445036938 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132400465 chr12:132400463 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_2389 0 0 1 0 1 ULK1 chr12:132400436 3'AG 132400436 Downstream 28bp
1087 chr7 149503953 149503953 1 + G T PAAD 149503955 + 149503935 149503975 41 GCTTCTGCGCCCCCGGCTGCACCTGCCCCCCTGGTCTTTTC GCTTCTGCGCCCCCGGCTTCACCTGCCCCCCTGGTCTTTTC < 41bp 0.432731474051955 0.741403404729359 NA NA prediction 0.482806809458718 Functional Gain - SSPO ENSG00000197558 ncRNA_exonic Human protein_coding chr7:149503955 chr7:149503953 . 0.401 2 19 hm6Am_associated_SNPs_2392 0 0 0 0 1 SSPO chr7:149503922 3'AG 149503922 Downstream 32bp
1088 chr22 42473371 42473371 1 + G A LGG 42473373 + 42473353 42473393 41 ACCACATGGGCTTCCTGCGCACCTGGGGGGGCCCAGGGACC ACCACATGGGCTTCCTGCACACCTGGGGGGGCCCAGGGACC < 41bp 0.522079930223098 0.763473525473167 NA NA prediction 0.482787190500137 Functional Gain - FAM109B ENSG00000177096 CDS Human protein_coding chr22:42473373 chr22:42473371 nonsynonymous SNV 0.901 2 19 hm6Am_associated_SNPs_2394 0 0 0 0 1 FAM109B chr22:42473284 3'AG 42473284 Downstream 88bp
1089 chr6 108492665 108492665 1 + G A LUAD 108492667 + 108492647 108492687 41 TTCCTGCGATTTCAGGCCGCATTTTAGATATCCCCTGCAAA TTCCTGCGATTTCAGGCCACATTTTAGATATCCCCTGCAAA < 41bp 0.532853814446343 0.774047110591436 NA NA prediction 0.482386592290185 Functional Gain - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108492667 chr6:108492665 nonsynonymous SNV 0.998 2 19 hm6Am_associated_SNPs_2400 0 0 0 0 1 NR2E1 chr6:108492662 3'AG 108492662 Downstream 4bp
1090 chr19 14040397 14040397 1 + G C LUAD 14040396 + 14040376 14040416 41 GGTGCCCCCAGAAGTGGCCCAGCAGTACCAGGACATCATGC GGTGCCCCCAGAAGTGGCCCACCAGTACCAGGACATCATGC < 41bp 0.49148319388608 0.741140028690487 NA NA prediction 0.482280057380973 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040396 chr19:14040397 nonsynonymous SNV 0.998 1 22 hm6Am_associated_SNPs_2403 0 0 0 0 2 CC2D1A chr19:14040347 3'AG 14040347 Downstream 51bp
1091 chr19 14040397 14040397 1 + G C LUAD 14040396 + 14040376 14040416 41 GGTGCCCCCAGAAGTGGCCCAGCAGTACCAGGACATCATGC GGTGCCCCCAGAAGTGGCCCACCAGTACCAGGACATCATGC < 41bp 0.49148319388608 0.741140028690487 NA NA prediction 0.482280057380973 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040396 chr19:14040397 nonsynonymous SNV 0.998 1 22 hm6Am_associated_SNPs_2403 0 0 0 0 2 CC2D1A chr19:14040473 5'GT 14040473 Upstream 77bp
1092 chr20 21687154 21687154 1 + G A UCEC 21687156 + 21687136 21687176 41 CCAACGCCATCCGCTTGCGCATTGTGGAGCTGGCGCAGCTG CCAACGCCATCCGCTTGCACATTGTGGAGCTGGCGCAGCTG < 41bp 0.481349759738356 0.740988903894474 NA NA prediction 0.481977807788947 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21687156 chr20:21687154 nonsynonymous SNV 0.923 5 19 hm6Am_associated_SNPs_2408 0 0 0 0 1 PAX1 chr20:21687076 3'AG 21687076 Downstream 79bp
1093 chr3 159706936 159706936 1 - C T UCEC 159706934 - 159706914 159706954 41 TGGACACATGCTGAGCCGGCACTGCAGGGACACAGGGCGAG TGGACACATGCTGAGCCGACACTGCAGGGACACAGGGCGAG < 41bp 0.506495645466668 0.747459214092953 NA NA prediction 0.48192713725257 Functional Gain - IL12A ENSG00000168811 CDS Human protein_coding chr3:159706934 chr3:159706936 synonymous SNV . 0 19 hm6Am_associated_SNPs_2409 0 0 0 0 1 IL12A chr3:159706884 5'GT 159706884 Upstream 53bp
1094 chr2 113251755 113251755 1 + G T OV 113251757 + 113251737 113251777 41 CTGAACTGGCTGAGTCCTGCACATGGTTCCCTGAATCTTAT CTGAACTGGCTGAGTCCTTCACATGGTTCCCTGAATCTTAT < 41bp 0.321874825848393 0.740929438928503 NA NA prediction 0.481858877857005 Functional Gain - TTL ENSG00000114999 CDS Human protein_coding chr2:113251757 chr2:113251755 nonsynonymous SNV 0.998 1 19 hm6Am_associated_SNPs_2412 0 0 1 0 1 TTL chr2:113251720 3'AG 113251720 Downstream 36bp
1095 chr19 7598457 7598457 1 + G A UCEC 7598459 + 7598439 7598479 41 GAGCTGCAGGCCTACATCGCACAGTGCCAGGACAGCCCCAC GAGCTGCAGGCCTACATCACACAGTGCCAGGACAGCCCCAC < 41bp 0.489847687460966 0.740772908271172 NA NA prediction 0.481545816542344 Functional Gain - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7598459 chr19:7598457 nonsynonymous SNV 0.906 3 19 hm6Am_associated_SNPs_2416 0 0 0 0 2 MCOLN1 chr19:7598409 3'AG 7598409 Downstream 49bp
1096 chr19 7598457 7598457 1 + G A UCEC 7598459 + 7598439 7598479 41 GAGCTGCAGGCCTACATCGCACAGTGCCAGGACAGCCCCAC GAGCTGCAGGCCTACATCACACAGTGCCAGGACAGCCCCAC < 41bp 0.489847687460966 0.740772908271172 NA NA prediction 0.481545816542344 Functional Gain - MCOLN1 ENSG00000090674 CDS Human other chr19:7598459 chr19:7598457 nonsynonymous SNV 0.906 3 19 hm6Am_associated_SNPs_2416 0 0 0 0 2 MCOLN1 chr19:7598539 5'GT 7598539 Upstream 83bp
1097 chr11 10476913 10476913 1 + G T rs28403593 10476915 + 10476895 10476935 41 TCCTGTGGGTCACTTGAGGCAGGCTCCACCTTCCCCAGGAG TCCTGTGGGTCACTTGAGTCAGGCTCCACCTTCCCCAGGAG < 41bp 0.681344327927556 0.921995342420433 NA NA prediction 0.481302028985754 Functional Gain - AMPD3 ENSG00000133805 UTR5 Human protein_coding chr11:10476915 chr11:10476913 . . 0 19 hm6Am_associated_SNPs_2419 1 0 0 0 1 AMPD3 chr11:10476995 5'GT 10476995 Upstream 83bp
1098 chr6 37138908 37138908 1 + G A DLBC 37138910 + 37138890 37138930 41 CGCCCCTGCAGCCTAATGGCACTCGAGTGCCCATGGAAGTG CGCCCCTGCAGCCTAATGACACTCGAGTGCCCATGGAAGTG < 41bp 0.485302321549189 0.740616158789924 NA NA prediction 0.481232317579849 Functional Gain - PIM1 ENSG00000137193 CDS Human protein_coding chr6:37138910 chr6:37138908 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_2422 0 0 1 0 1 PIM1 chr6:37138901 3'AG 37138901 Downstream 8bp
1099 chr5 131409597 131409597 1 + G A rs2069622 131409599 + 131409579 131409619 41 CTCGCCCAGCCCCAGCACGCAGCCCTGGGAGCATGTGAATG CTCGCCCAGCCCCAGCACACAGCCCTGGGAGCATGTGAATG < 41bp 0.481534009113663 0.740526482617079 NA NA prediction 0.481052965234158 Functional Gain - CSF2 ENSG00000164400 CDS Human protein_coding chr5:131409599 chr5:131409597 synonymous SNV . 0 19 hm6Am_associated_SNPs_2424 0 0 0 0 1 CSF2 chr5:131409675 5'GT 131409675 Upstream 79bp
1100 chr2 98264496 98264496 1 + G A LGG 98264498 + 98264478 98264518 41 CGTCGTCTGGTTTTGGCTGCACAAAGGCGAGGCCCAGCGAT CGTCGTCTGGTTTTGGCTACACAAAGGCGAGGCCCAGCGAT < 41bp 0.523786802147233 0.764305815482359 NA NA prediction 0.481038026670251 Functional Gain - COX5B ENSG00000135940 CDS Human protein_coding chr2:98264498 chr2:98264496 synonymous SNV . 0 19 hm6Am_associated_SNPs_2425 0 0 1 0 1 COX5B chr2:98264459 3'AG 98264459 Downstream 38bp
1101 chr17 55191897 55191897 1 + G A CESC 55191899 + 55191879 55191919 41 GCACCTGTTCGTGCAGCAGCACACACACCCTACCTTCCACG GCACCTGTTCGTGCAGCAACACACACACCCTACCTTCCACG < 41bp 0.530240568239889 0.770730478624723 NA NA prediction 0.480979820769668 Functional Gain - AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55191899 chr17:55191897 synonymous SNV . 0 19 hm6Am_associated_SNPs_2428 0 0 1 0 1 AKAP1 chr17:55191820 3'AG 55191820 Downstream 78bp
1102 chr17 47293944 47293944 1 + G A COAD 47293946 + 47293926 47293966 41 ATGGCCTTCACTACCCAGGCACTGGCCAGCGTGGCCTACCA ATGGCCTTCACTACCCAGACACTGGCCAGCGTGGCCTACCA < 41bp 0.533799984131043 0.774224853193009 NA NA prediction 0.480849738123931 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47293946 chr17:47293944 nonsynonymous SNV 0.996 4 19 hm6Am_associated_SNPs_2429 0 0 0 0 2 ABI3 chr17:47293893 3'AG 47293893 Downstream 52bp
1103 chr17 47293944 47293944 1 + G A COAD 47293946 + 47293926 47293966 41 ATGGCCTTCACTACCCAGGCACTGGCCAGCGTGGCCTACCA ATGGCCTTCACTACCCAGACACTGGCCAGCGTGGCCTACCA < 41bp 0.533799984131043 0.774224853193009 NA NA prediction 0.480849738123931 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47293946 chr17:47293944 nonsynonymous SNV 0.996 4 19 hm6Am_associated_SNPs_2429 0 0 0 0 2 ABI3 chr17:47294042 5'GT 47294042 Upstream 99bp
1104 chr19 11468367 11468367 1 + G A rs140817544 11468369 + 11468349 11468389 41 CATGGCGGGAGGGAGACCGCATCTGAAGAGGAGTTTCTCCA CATGGCGGGAGGGAGACCACATCTGAAGAGGAGTTTCTCCA < 41bp 0.484120028536729 0.740356195987094 NA NA prediction 0.480712391974189 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11468369 chr19:11468367 synonymous SNV . 0 19 hm6Am_associated_SNPs_2434 0 0 0 0 2 PLPPR2 chr19:11468336 3'AG 11468336 Downstream 32bp
1105 chr19 11468367 11468367 1 + G A rs140817544 11468369 + 11468349 11468389 41 CATGGCGGGAGGGAGACCGCATCTGAAGAGGAGTTTCTCCA CATGGCGGGAGGGAGACCACATCTGAAGAGGAGTTTCTCCA < 41bp 0.484120028536729 0.740356195987094 NA NA prediction 0.480712391974189 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11468369 chr19:11468367 synonymous SNV . 0 19 hm6Am_associated_SNPs_2434 0 0 0 0 2 PLPPR2 chr19:11468415 5'GT 11468415 Upstream 49bp
1106 chr1 11845342 11845342 1 + G A UCEC 11845344 + 11845324 11845364 41 TGGGACTGCCAGGGGCCGGCAAGGTACGCCCCAAGCCCCAG TGGGACTGCCAGGGGCCGACAAGGTACGCCCCAAGCCCCAG < 41bp 0.513053822985687 0.75333680254612 NA NA prediction 0.480565959120864 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11845344 chr1:11845342 nonsynonymous SNV 0.000 1 19 hm6Am_associated_SNPs_2437 0 0 0 0 1 C1orf167 chr1:11845346 5'GT 11845346 Upstream 5bp
1107 chr11 6413377 6413377 1 + G A UCEC 6413379 + 6413359 6413399 41 TGCCTGCCGAAGCCCTGCGCACCCTCAGGTACTTATCGTCC TGCCTGCCGAAGCCCTGCACACCCTCAGGTACTTATCGTCC < 41bp 0.530139603928715 0.770403429775534 NA NA prediction 0.480527651693638 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413379 chr11:6413377 nonsynonymous SNV 0.901 1 19 hm6Am_associated_SNPs_2438 0 0 1 0 2 SMPD1 chr11:6413386 5'GT 6413386 Upstream 10bp
1108 chr11 6413377 6413377 1 + G A UCEC 6413379 + 6413359 6413399 41 TGCCTGCCGAAGCCCTGCGCACCCTCAGGTACTTATCGTCC TGCCTGCCGAAGCCCTGCACACCCTCAGGTACTTATCGTCC < 41bp 0.530139603928715 0.770403429775534 NA NA prediction 0.480527651693638 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413379 chr11:6413377 nonsynonymous SNV 0.901 1 19 hm6Am_associated_SNPs_2438 0 0 1 0 2 SMPD1 chr11:6413426 5'GT 6413426 Upstream 50bp
1109 chr17 59557640 59557640 1 + G C CESC 59557639 + 59557619 59557659 41 CCTCAGCACCTTTCCCACCCAGAGGGACTCAAGCCTCTTCT CCTCAGCACCTTTCCCACCCACAGGGACTCAAGCCTCTTCT < 41bp 0.477440972443741 0.740228307061029 NA NA prediction 0.480456614122059 Functional Gain - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59557639 chr17:59557640 nonsynonymous SNV 0.990 4 22 hm6Am_associated_SNPs_2439 0 0 0 0 1 TBX4 chr17:59557680 5'GT 59557680 Upstream 41bp
1110 chr3 113122860 113122860 1 + G T UCEC 113122862 + 113122842 113122882 41 CCCATTCTGACCCTGAGAGCACCTGGCAGGTATGTGGAAAA CCCATTCTGACCCTGAGATCACCTGGCAGGTATGTGGAAAA < 41bp 0.688153377483095 0.928309757431728 NA NA prediction 0.480312759897267 Functional Gain - CFAP44 ENSG00000206530 CDS Human antisense chr3:113122862 chr3:113122860 nonsynonymous SNV 0.991 0 19 hm6Am_associated_SNPs_2442 0 0 0 0 1 CFAP44-AS1 chr3:113122903 5'GT 113122903 Upstream 44bp
1111 chr10 88421042 88421042 1 + G A UCEC 88421044 + 88421024 88421064 41 CTTCTCTGTCCTAGGTACGCACACGTCCTGACACCCTACAT CTTCTCTGTCCTAGGTACACACACGTCCTGACACCCTACAT < 41bp 0.537810683595806 0.777961942338389 NA NA prediction 0.480302517485167 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88421044 chr10:88421042 nonsynonymous SNV 0.195 2 19 hm6Am_associated_SNPs_2444 0 0 0 0 1 OPN4 chr10:88421038 3'AG 88421038 Downstream 5bp
1112 chr17 6900206 6900206 1 + G A UCEC 6900208 + 6900188 6900228 41 TGCAGTTCGTGAGGCTGCGCAAGCACCACTGGCTGGTGGAC TGCAGTTCGTGAGGCTGCACAAGCACCACTGGCTGGTGGAC < 41bp 0.48280781393992 0.740017406658429 NA NA prediction 0.480034813316857 Functional Gain - ALOX12 ENSG00000108839 CDS Human protein_coding chr17:6900208 chr17:6900206 nonsynonymous SNV 0.931 0 19 hm6Am_associated_SNPs_2448 0 0 0 0 1 ALOX12 chr17:6900145 3'AG 6900145 Downstream 62bp
1113 chr19 16884050 16884050 1 + G A LUSC 16884052 + 16884032 16884072 41 AGCTGGTTCCAGTTGTGCGCACACCCTGTGCTGGTGCCCCT AGCTGGTTCCAGTTGTGCACACACCCTGTGCTGGTGCCCCT < 41bp 0.479002540348621 0.739999401181319 NA NA prediction 0.479998802362639 Functional Gain - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16884052 chr19:16884050 nonsynonymous SNV 0.002 0 19 hm6Am_associated_SNPs_2449 0 0 0 0 1 NWD1 chr19:16884134 5'GT 16884134 Upstream 85bp
1114 chr9 137982159 137982159 1 + G A THCA 137982161 + 137982141 137982181 41 TGTGTTCACGGGATGCCCGCACAAAACAGCTGAGGCAGCTA TGTGTTCACGGGATGCCCACACAAAACAGCTGAGGCAGCTA < 41bp 0.545237668789577 0.785231149073031 NA NA prediction 0.479986960566908 Functional Gain - OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137982161 chr9:137982159 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_2450 0 0 0 0 1 OLFM1 chr9:137982190 5'GT 137982190 Upstream 32bp
1115 chr2 85822968 85822968 1 + G C rs538348064 85822970 + 85822950 85822990 41 AACATGCTGCTGGAGCTCGCAAGGTGGGTGCGCGGGGCTTG AACATGCTGCTGGAGCTCCCAAGGTGGGTGCGCGGGGCTTG < 41bp 0.632519798185504 0.872501335315607 NA NA prediction 0.479963074260206 Functional Gain - RNF181 ENSG00000168894 CDS Human protein_coding chr2:85822970 chr2:85822968 nonsynonymous SNV 0.569 5 19 hm6Am_associated_SNPs_2451 0 0 1 0 1 RNF181 chr2:85822972 5'GT 85822972 Upstream 5bp
1116 chr17 4389539 4389539 1 + G C CESC 4389538 + 4389518 4389558 41 TGCAGTCTGTGGTGGTGCCCAGATGCCGGGGGACGGCAGAG TGCAGTCTGTGGTGGTGCCCACATGCCGGGGGACGGCAGAG < 41bp 0.525200790978305 0.765090116702499 NA NA prediction 0.479778651448388 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4389538 chr17:4389539 nonsynonymous SNV 0.995 0 22 hm6Am_associated_SNPs_2454 0 0 0 0 2 SPNS3 chr17:4389523 3'AG 4389523 Downstream 17bp
1117 chr17 4389539 4389539 1 + G C CESC 4389538 + 4389518 4389558 41 TGCAGTCTGTGGTGGTGCCCAGATGCCGGGGGACGGCAGAG TGCAGTCTGTGGTGGTGCCCACATGCCGGGGGACGGCAGAG < 41bp 0.525200790978305 0.765090116702499 NA NA prediction 0.479778651448388 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4389538 chr17:4389539 nonsynonymous SNV 0.995 0 22 hm6Am_associated_SNPs_2454 0 0 0 0 2 SPNS3 chr17:4389621 5'GT 4389621 Upstream 83bp
1118 chr14 37132666 37132666 1 + G A STAD 37132668 + 37132648 37132688 41 GTTCGGTGGCCATGCCGCGCACCTGGCCCTCCTCGCACTCC GTTCGGTGGCCATGCCGCACACCTGGCCCTCCTCGCACTCC < 41bp 0.485078195586438 0.739859018528079 NA NA prediction 0.479718037056158 Functional Gain - PAX9 ENSG00000198807 CDS Human protein_coding chr14:37132668 chr14:37132666 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_2455 0 0 1 0 1 PAX9 chr14:37132728 5'GT 37132728 Upstream 63bp
1119 chr9 128509928 128509928 1 + G A UCEC 128509930 + 128509910 128509950 41 AGCTTGGACGAGGCGCAAGCAAAGTTGGTGTCGTCTCATTA AGCTTGGACGAGGCGCAAACAAAGTTGGTGTCGTCTCATTA < 41bp 0.492205474768701 0.739763422236492 NA NA prediction 0.479526844472984 Functional Gain - PBX3 ENSG00000167081 CDS Human protein_coding chr9:128509930 chr9:128509928 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_2457 0 0 1 0 1 PBX3 chr9:128509932 5'GT 128509932 Upstream 5bp
1120 chr12 8276533 8276533 1 + G A SKCM 8276535 + 8276515 8276555 41 ATGAATTCAAGTCCTCAGGCATCAACACAGCCTCTTCTGCA ATGAATTCAAGTCCTCAGACATCAACACAGCCTCTTCTGCA < 41bp 0.491991524801267 0.739617812040371 NA NA prediction 0.479235624080741 Functional Gain - CLEC4A ENSG00000111729 CDS Human protein_coding chr12:8276535 chr12:8276533 nonsynonymous SNV 0.473 0 19 hm6Am_associated_SNPs_2465 0 0 0 0 1 CLEC4A chr12:8276556 5'GT 8276556 Upstream 24bp
1121 chr11 65686980 65686980 1 + G T COAD 65686982 + 65686962 65687002 41 GAGGCCCCGAGATGCCGAGCAAGAAGAAGAAGTACAACGCG GAGGCCCCGAGATGCCGATCAAGAAGAAGAAGTACAACGCG < 41bp 0.586201094254419 0.825783436593753 NA NA prediction 0.479164684678668 Functional Gain - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65686982 chr11:65686980 nonsynonymous SNV 0.996 1 19 hm6Am_associated_SNPs_2468 0 0 1 0 1 DRAP1 chr11:65687014 5'GT 65687014 Upstream 35bp
1122 chr3 111697969 111697969 1 + G T HNSC 111697971 + 111697951 111697991 41 TGTCGGAGCTGGGGCTGGGCAGCCGTCCCCTTCGGTCCCCA TGTCGGAGCTGGGGCTGGTCAGCCGTCCCCTTCGGTCCCCA < 41bp 0.690744588141302 0.930237977562446 NA NA prediction 0.478986778842289 Functional Gain - ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111697971 chr3:111697969 nonsynonymous SNV 0.592 1 19 hm6Am_associated_SNPs_2471 0 0 1 0 1 ABHD10 chr3:111698050 5'GT 111698050 Upstream 82bp
1123 chr19 33642136 33642136 1 + G C BLCA 33642135 + 33642115 33642155 41 CTGCTTTGACCCCGACAGCCAGAGGGTGGCTTCTGTCTCAT CTGCTTTGACCCCGACAGCCACAGGGTGGCTTCTGTCTCAT < 41bp 0.566043532031153 0.805520947685769 NA NA prediction 0.478954831309232 Functional Gain - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33642135 chr19:33642136 nonsynonymous SNV 0.997 2 22 hm6Am_associated_SNPs_2472 0 0 0 0 2 WDR88 chr19:33642087 3'AG 33642087 Downstream 50bp
1124 chr19 33642136 33642136 1 + G C BLCA 33642135 + 33642115 33642155 41 CTGCTTTGACCCCGACAGCCAGAGGGTGGCTTCTGTCTCAT CTGCTTTGACCCCGACAGCCACAGGGTGGCTTCTGTCTCAT < 41bp 0.566043532031153 0.805520947685769 NA NA prediction 0.478954831309232 Functional Gain - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33642135 chr19:33642136 nonsynonymous SNV 0.997 2 22 hm6Am_associated_SNPs_2472 0 0 0 0 2 WDR88 chr19:33642216 5'GT 33642216 Upstream 81bp
1125 chr18 19348649 19348649 1 + G C BRCA 19348648 + 19348628 19348668 41 GAGGAATCTTTGCAGGTGCCAGAGTGGTGCGAGGAGTGGAC GAGGAATCTTTGCAGGTGCCACAGTGGTGCGAGGAGTGGAC < 41bp 0.49266802032287 0.739428547324955 NA NA prediction 0.47885709464991 Functional Gain - MIB1 ENSG00000101752 CDS Human protein_coding chr18:19348648 chr18:19348649 nonsynonymous SNV 1.000 2 22 hm6Am_associated_SNPs_2473 0 0 1 0 1 MIB1 chr18:19348713 5'GT 19348713 Upstream 65bp
1126 chr3 114018469 114018469 1 + G C rs149263615 114018468 + 114018448 114018488 41 TGAGCACGGTGCCAGGTTCCAGATTCCATTGCTTGGAGCCA TGAGCACGGTGCCAGGTTCCACATTCCATTGCTTGGAGCCA < 41bp 0.500596971726968 0.740021724539572 NA NA prediction 0.478849505625207 Functional Gain - TIGIT ENSG00000181847 CDS Human protein_coding chr3:114018468 chr3:114018469 nonsynonymous SNV 0.169 1 22 hm6Am_associated_SNPs_2474 0 0 0 0 2 TIGIT chr3:114018444 3'AG 114018444 Downstream 26bp
1127 chr3 114018469 114018469 1 + G C rs149263615 114018468 + 114018448 114018488 41 TGAGCACGGTGCCAGGTTCCAGATTCCATTGCTTGGAGCCA TGAGCACGGTGCCAGGTTCCACATTCCATTGCTTGGAGCCA < 41bp 0.500596971726968 0.740021724539572 NA NA prediction 0.478849505625207 Functional Gain - TIGIT ENSG00000181847 CDS Human protein_coding chr3:114018468 chr3:114018469 nonsynonymous SNV 0.169 1 22 hm6Am_associated_SNPs_2474 0 0 0 0 2 TIGIT chr3:114018550 5'GT 114018550 Upstream 82bp
1128 chr6 36926965 36926965 1 + G A LUSC 36926967 + 36926947 36926987 41 CGCCAAGGCCTACGCACGGCAGTGCGTGTGGGGCCACAACA CGCCAAGGCCTACGCACGACAGTGCGTGTGGGGCCACAACA < 41bp 0.543173152065697 0.782522252602613 NA NA prediction 0.478698201073832 Functional Gain - PI16 ENSG00000164530 CDS Human protein_coding chr6:36926967 chr6:36926965 synonymous SNV . 0 19 hm6Am_associated_SNPs_2480 0 0 0 0 1 PI16 chr6:36926921 3'AG 36926921 Downstream 45bp
1129 chr12 108079684 108079684 1 + G A UCEC 108079686 + 108079666 108079706 41 ACTTGAGGACCATGAACCGCAGCCGCCAGGTGACGTGCGTG ACTTGAGGACCATGAACCACAGCCGCCAGGTGACGTGCGTG < 41bp 0.485298243428269 0.739319347859354 NA NA prediction 0.478638695718708 Functional Gain - PWP1 ENSG00000136045 CDS Human protein_coding chr12:108079686 chr12:108079684 nonsynonymous SNV 0.997 2 19 hm6Am_associated_SNPs_2481 0 0 1 0 1 PWP1 chr12:108079748 5'GT 108079748 Upstream 65bp
1130 chr1 27679830 27679830 1 + G A CESC 27679832 + 27679812 27679852 41 GTACAAGGGTTGTGCGACGCAGCCTCAGCCCTGTGTTCAAT GTACAAGGGTTGTGCGACACAGCCTCAGCCCTGTGTTCAAT < 41bp 0.529129839549527 0.76844635732096 NA NA prediction 0.478633035542867 Functional Gain - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27679832 chr1:27679830 nonsynonymous SNV 0.808 0 19 hm6Am_associated_SNPs_2482 0 0 0 0 1 SYTL1 chr1:27679774 3'AG 27679774 Downstream 57bp
1131 chr4 42895585 42895585 1 + G A SKCM 42895587 + 42895567 42895607 41 GAAGAGTCAACATTTTAAGCAAAAATGGCACAGTCAGAGGC GAAGAGTCAACATTTTAAACAAAAATGGCACAGTCAGAGGC < 41bp 0.530681320553366 0.769850287044874 NA NA prediction 0.478337932983015 Functional Gain - GRXCR1 ENSG00000215203 CDS Human protein_coding chr4:42895587 chr4:42895585 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_2490 0 0 0 0 1 GRXCR1 chr4:42895667 5'GT 42895667 Upstream 83bp
1132 chr3 112710121 112710121 1 + G A SKCM 112710123 + 112710103 112710143 41 CGGCCACTGAACGGAACCGCATCGACTACGTCAGCTCCGCC CGGCCACTGAACGGAACCACATCGACTACGTCAGCTCCGCC < 41bp 0.553849471244832 0.792869181609942 NA NA prediction 0.478039420730221 Functional Gain - GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112710123 chr3:112710121 nonsynonymous SNV 0.981 2 19 hm6Am_associated_SNPs_2499 0 0 1 0 1 GTPBP8 chr3:112710182 5'GT 112710182 Upstream 62bp
1133 chr16 3165878 3165878 1 + G C LUSC 3165877 + 3165857 3165897 41 TTTCCCGAGAGGGGAGGACCAGAGACCGGCAGATGGCTGCA TTTCCCGAGAGGGGAGGACCACAGACCGGCAGATGGCTGCA < 41bp 0.517279422157764 0.756292775344575 NA NA prediction 0.478026706373622 Functional Gain - ZNF205 ENSG00000122386 CDS Human protein_coding chr16:3165877 chr16:3165878 nonsynonymous SNV 0.993 3 22 hm6Am_associated_SNPs_2501 0 0 0 0 2 ZNF205 chr16:3165830 3'AG 3165830 Downstream 49bp
1134 chr16 3165878 3165878 1 + G C LUSC 3165877 + 3165857 3165897 41 TTTCCCGAGAGGGGAGGACCAGAGACCGGCAGATGGCTGCA TTTCCCGAGAGGGGAGGACCACAGACCGGCAGATGGCTGCA < 41bp 0.517279422157764 0.756292775344575 NA NA prediction 0.478026706373622 Functional Gain - ZNF205 ENSG00000122386 CDS Human protein_coding chr16:3165877 chr16:3165878 nonsynonymous SNV 0.993 3 22 hm6Am_associated_SNPs_2501 0 0 0 0 2 ZNF205 chr16:3165921 5'GT 3165921 Upstream 44bp
1135 chr19 10169579 10169579 1 + G A LAML 10169581 + 10169561 10169601 41 GTAGCCATAGCCTCCTATGCACTGGCCCTTGCCAACAGCTC GTAGCCATAGCCTCCTATACACTGGCCCTTGCCAACAGCTC < 41bp 0.520214420623363 0.759168233156168 NA NA prediction 0.47790762506561 Functional Gain - C3P1 ENSG00000167798 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:10169581 chr19:10169579 . . 0 19 hm6Am_associated_SNPs_2506 0 0 0 0 1 C3P1 chr19:10169486 3'AG 10169486 Downstream 94bp
1136 chr1 207228072 207228072 1 + G A SARC 207228074 + 207228054 207228094 41 AGAGCTGCCATGTCTGGGGCATCTTCCTCAGAACAGAACAA AGAGCTGCCATGTCTGGGACATCTTCCTCAGAACAGAACAA < 41bp 0.520661524267019 0.759578963064858 NA NA prediction 0.477834877595677 Functional Gain - PFKFB2 ENSG00000123836 CDS Human protein_coding chr1:207228074 chr1:207228072 nonsynonymous SNV 0.055 0 19 hm6Am_associated_SNPs_2508 0 0 0 0 1 PFKFB2 chr1:207228147 5'GT 207228147 Upstream 76bp
1137 chr3 142775246 142775246 1 + G C LUSC 142775245 + 142775225 142775265 41 AGAAGTCCAGATCCCAGTCCAGATCTCCACACAGGTCTCAT AGAAGTCCAGATCCCAGTCCACATCTCCACACAGGTCTCAT < 41bp 0.487626845529313 0.738917416036213 NA NA prediction 0.477834832072427 Functional Gain - U2SURP ENSG00000163714 CDS Human protein_coding chr3:142775245 chr3:142775246 nonsynonymous SNV 0.998 3 22 hm6Am_associated_SNPs_2509 0 0 1 0 1 U2SURP chr3:142775154 3'AG 142775154 Downstream 93bp
1138 chr12 72332847 72332847 1 + G A STAD 72332849 + 72332829 72332869 41 TTCAGCAGTGCCCGAAGAGCATCAGCTACTTGGCAGCTCAA TTCAGCAGTGCCCGAAGAACATCAGCTACTTGGCAGCTCAA < 41bp 0.488470831933445 0.738851917109198 NA NA prediction 0.477703834218396 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72332849 chr12:72332847 synonymous SNV . 0 19 hm6Am_associated_SNPs_2513 0 0 0 0 1 TPH2 chr12:72332871 5'GT 72332871 Upstream 25bp
1139 chr19 50384662 50384662 1 + G A STAD 50384664 + 50384644 50384684 41 GCTGGAGGTTCCCTGCCCGCACTGCACTTCCACCGCGGGGG GCTGGAGGTTCCCTGCCCACACTGCACTTCCACCGCGGGGG < 41bp 0.543161714157718 0.781793750227994 NA NA prediction 0.477264072140553 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50384664 chr19:50384662 nonsynonymous SNV 0.548 2 19 hm6Am_associated_SNPs_2522 0 0 0 0 1 TBC1D17 chr19:50384732 5'GT 50384732 Upstream 71bp
1140 chr11 75442264 75442264 1 + G A rs12281468 75442266 + 75442246 75442286 41 GTTATATCAAAGAGCTGTGCAACCTCTTCGAGGCCCACAAA GTTATATCAAAGAGCTGTACAACCTCTTCGAGGCCCACAAA < 41bp 0.542682803636658 0.781297728534368 NA NA prediction 0.47722984979542 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75442266 chr11:75442264 nonsynonymous SNV 0.942 0 19 hm6Am_associated_SNPs_2523 0 0 0 0 1 MOGAT2 chr11:75442177 3'AG 75442177 Downstream 88bp
1141 chr16 67914539 67914539 1 + G A ESCA 67914541 + 67914521 67914561 41 CCCAAGCCTCCCCTAGCCGCACTCGTTCCCCTGATGTCATC CCCAAGCCTCCCCTAGCCACACTCGTTCCCCTGATGTCATC < 41bp 0.48507355124651 0.738578086629641 NA NA prediction 0.477156173259282 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914541 chr16:67914539 nonsynonymous SNV 0.747 4 19 hm6Am_associated_SNPs_2525 0 0 0 0 1 EDC4 chr16:67914460 3'AG 67914460 Downstream 80bp
1142 chr6 54254685 54254685 1 + G A LUAD 54254687 + 54254667 54254707 41 ATTGAAAAGTTGATTATCGCAGCTTGGGGCCAACTGACGAG ATTGAAAAGTTGATTATCACAGCTTGGGGCCAACTGACGAG < 41bp 0.529105942140456 0.767422132532159 NA NA prediction 0.476632380783405 Functional Gain - TINAG ENSG00000137251 CDS Human protein_coding chr6:54254687 chr6:54254685 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_2535 0 0 0 1 1 TINAG chr6:54254589 3'AG 54254589 Downstream 97bp
1143 chr9 101990216 101990216 1 + G A UCEC 101990218 + 101990198 101990238 41 GGACAAGGAGTGCAGGCCGCACAACCTCGGCAGGCACCGGG GGACAAGGAGTGCAGGCCACACAACCTCGGCAGGCACCGGG < 41bp 0.477473892203068 0.738306726533045 NA NA prediction 0.47661345306609 Functional Gain - SEC61B ENSG00000106803 CDS Human protein_coding chr9:101990218 chr9:101990216 nonsynonymous SNV 0.995 2 19 hm6Am_associated_SNPs_2536 0 0 1 0 1 SEC61B chr9:101990181 3'AG 101990181 Downstream 36bp
1144 chr16 84328689 84328689 1 + G A LGG 84328691 + 84328671 84328711 41 AAGAATATCTGGAAACGGGCATTGCCTGCGAGGCTGGCCGA AAGAATATCTGGAAACGGACATTGCCTGCGAGGCTGGCCGA < 41bp 0.537627174071494 0.775741346410132 NA NA prediction 0.476228344677276 Functional Gain - WFDC1 ENSG00000103175 CDS Human protein_coding chr16:84328691 chr16:84328689 nonsynonymous SNV 0.003 0 19 hm6Am_associated_SNPs_2542 0 0 0 0 1 WFDC1 chr16:84328721 5'GT 84328721 Upstream 33bp
1145 chr6 46623691 46623691 1 + G A SKCM 46623693 + 46623673 46623713 41 CCTATAGGGGAATGGTGCGCACAGCTCTAGGGATCATTGAA CCTATAGGGGAATGGTGCACACAGCTCTAGGGATCATTGAA < 41bp 0.52988809932758 0.767973700231412 NA NA prediction 0.476171201807664 Functional Gain - SLC25A27 ENSG00000153291 CDS Human protein_coding chr6:46623693 chr6:46623691 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_2543 0 0 0 0 2 SLC25A27 chr6:46623767 5'GT 46623767 Upstream 77bp
1146 chr6 46623691 46623691 1 + G A SKCM 46623693 + 46623673 46623713 41 CCTATAGGGGAATGGTGCGCACAGCTCTAGGGATCATTGAA CCTATAGGGGAATGGTGCACACAGCTCTAGGGATCATTGAA < 41bp 0.52988809932758 0.767973700231412 NA NA prediction 0.476171201807664 Functional Gain - SLC25A27 ENSG00000153291 CDS Human protein_coding chr6:46623693 chr6:46623691 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_2543 0 0 0 0 2 SLC25A27 chr6:46623771 5'GT 46623771 Upstream 81bp
1147 chr15 45408806 45408806 1 + G A PAAD 45408808 + 45408788 45408828 41 GCCGCGGAGTACGCGAACGCACTGGAGAAGGGGCTGCCGGA GCCGCGGAGTACGCGAACACACTGGAGAAGGGGCTGCCGGA < 41bp 0.558769473793657 0.796735333755899 NA NA prediction 0.475931719924483 Functional Gain - DUOXA2 ENSG00000140274 CDS Human protein_coding chr15:45408808 chr15:45408806 nonsynonymous SNV 0.111 4 19 hm6Am_associated_SNPs_2547 0 0 0 0 1 DUOXA2 chr15:45408714 3'AG 45408714 Downstream 93bp
1148 chr3 127390288 127390288 1 + G C BLCA 127390287 + 127390267 127390307 41 CCACCCCTAGATTGGCATCCAGAACTATTCCACAACCAGCA CCACCCCTAGATTGGCATCCACAACTATTCCACAACCAGCA < 41bp 0.538003378010492 0.775954048087208 NA NA prediction 0.475901340153431 Functional Gain - PODXL2 ENSG00000114631 CDS Human protein_coding chr3:127390287 chr3:127390288 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_2549 0 0 1 0 1 PODXL2 chr3:127390277 3'AG 127390277 Downstream 12bp
1149 chr5 79950727 79950727 1 + G C rs1574197 79950729 + 79950709 79950749 41 GCAGCGGCCGCAGCGGCCGCAGCGCCCCCAGCGCCCCCAGC GCAGCGGCCGCAGCGGCCCCAGCGCCCCCAGCGCCCCCAGC < 41bp 0.658073816261032 0.89597673618425 NA NA prediction 0.475805839846435 Functional Gain - MSH3 ENSG00000113318 CDS Human protein_coding chr5:79950729 chr5:79950727 nonsynonymous SNV 0.145 1 19 hm6Am_associated_SNPs_2553 0 0 0 0 1 MSH3 chr5:79950783 5'GT 79950783 Upstream 57bp
1150 chr10 45430193 45430193 1 + G C HNSC 45430192 + 45430172 45430212 41 CCCGAGGTGCTGGCCTCCCCAGAGCAGTACACAGACCCCTC CCCGAGGTGCTGGCCTCCCCACAGCAGTACACAGACCCCTC < 41bp 0.522480807139386 0.760341796526655 NA NA prediction 0.475721978774537 Functional Gain - TMEM72 ENSG00000187783 CDS Human protein_coding chr10:45430192 chr10:45430193 nonsynonymous SNV 0.704 0 22 hm6Am_associated_SNPs_2554 0 0 0 0 1 TMEM72 chr10:45430104 3'AG 45430104 Downstream 90bp
1151 chr16 89696859 89696859 1 + G A HNSC 89696861 + 89696841 89696881 41 GGCCCCTTGTGGCCGTCTGCACTGCAGACTTCTTTCGGGAC GGCCCCTTGTGGCCGTCTACACTGCAGACTTCTTTCGGGAC < 41bp 0.550288767031734 0.788094445970361 NA NA prediction 0.475611357877256 Functional Gain - DPEP1 ENSG00000015413 CDS Human protein_coding chr16:89696861 chr16:89696859 nonsynonymous SNV 0.013 1 19 hm6Am_associated_SNPs_2556 0 0 1 0 1 DPEP1 chr16:89696922 5'GT 89696922 Upstream 64bp
1152 chr17 26824203 26824203 1 + G A COAD 26824205 + 26824185 26824225 41 CATCCCCCTCTTCAGCCTGCACTCTTTCCCCTCCTGGGCAC CATCCCCCTCTTCAGCCTACACTCTTTCCCCTCCTGGGCAC < 41bp 0.524904852487368 0.762630057143563 NA NA prediction 0.47545040931239 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26824205 chr17:26824203 synonymous SNV . 0 19 hm6Am_associated_SNPs_2562 0 0 0 0 1 SLC13A2 chr17:26824117 3'AG 26824117 Downstream 87bp
1153 chr19 39957172 39957172 1 + G A STAD 39957174 + 39957154 39957194 41 CCCTGAAGATGATCCCACGCATCGACTACGATCGCATCAAG CCCTGAAGATGATCCCACACATCGACTACGATCGCATCAAG < 41bp 0.484750076738304 0.737636580752427 NA NA prediction 0.475273161504855 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39957174 chr19:39957172 nonsynonymous SNV 0.046 4 19 hm6Am_associated_SNPs_2564 0 0 1 0 2 SUPT5H chr19:39957120 3'AG 39957120 Downstream 53bp
1154 chr19 39957172 39957172 1 + G A STAD 39957174 + 39957154 39957194 41 CCCTGAAGATGATCCCACGCATCGACTACGATCGCATCAAG CCCTGAAGATGATCCCACACATCGACTACGATCGCATCAAG < 41bp 0.484750076738304 0.737636580752427 NA NA prediction 0.475273161504855 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39957174 chr19:39957172 nonsynonymous SNV 0.046 4 19 hm6Am_associated_SNPs_2564 0 0 1 0 2 SUPT5H chr19:39957209 5'GT 39957209 Upstream 38bp
1155 chr16 67040714 67040714 1 + G A GBM 67040716 + 67040696 67040736 41 ACTGGGCCAACTTTGCCCGCACAGGGTGAGTCTGCCCCCCA ACTGGGCCAACTTTGCCCACACAGGGTGAGTCTGCCCCCCA < 41bp 0.556980324806231 0.794571276643266 NA NA prediction 0.47518190367407 Functional Gain - CES4A ENSG00000172824 CDS Human protein_coding chr16:67040716 chr16:67040714 nonsynonymous SNV 0.013 1 19 hm6Am_associated_SNPs_2566 0 0 0 0 1 CES4A chr16:67040648 3'AG 67040648 Downstream 67bp
1156 chr8 145730035 145730035 1 + G A CESC 145730037 + 145730017 145730057 41 CGTGCCAACATCGGGGACGCACAGGCTATGGGGCAGAGGCC CGTGCCAACATCGGGGACACACAGGCTATGGGGCAGAGGCC < 41bp 0.54484013725855 0.782390598312064 NA NA prediction 0.475100922107029 Functional Gain - GPT ENSG00000167701 CDS Human protein_coding chr8:145730037 chr8:145730035 nonsynonymous SNV 0.983 4 19 hm6Am_associated_SNPs_2569 0 0 0 0 1 GPT chr8:145730076 5'GT 145730076 Upstream 42bp
1157 chr19 855757 855757 1 + G A STAD 855759 + 855739 855779 41 GCCGTCGCAGCAACGTCTGCACTCTCGTGAGGGGCCGGCAG GCCGTCGCAGCAACGTCTACACTCTCGTGAGGGGCCGGCAG < 41bp 0.548718072646278 0.786199485732577 NA NA prediction 0.474962826172599 Functional Gain - ELANE ENSG00000197561 CDS Human protein_coding chr19:855759 chr19:855757 nonsynonymous SNV 0.036 4 19 hm6Am_associated_SNPs_2573 0 0 0 0 1 ELANE chr19:855794 5'GT 855794 Upstream 38bp
1158 chr9 104312993 104312993 1 + G A UCEC 104312995 + 104312975 104313015 41 GAGAGCCTACAGTTGAAAGCACACTTGGATGAGGCTCGGAC GAGAGCCTACAGTTGAAAACACACTTGGATGAGGCTCGGAC < 41bp 0.483162247870038 0.737474846724938 NA NA prediction 0.474949693449875 Functional Gain - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104312995 chr9:104312993 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_2574 0 0 0 0 1 RNF20 chr9:104313067 5'GT 104313067 Upstream 75bp
1159 chr11 71507123 71507123 1 - C T GBM 71507121 - 71507101 71507141 41 CGCTGGTGCTCCCGGCAGGCAGCCAGCCTCCGCAGGACCCC CGCTGGTGCTCCCGGCAGACAGCCAGCCTCCGCAGGACCCC < 41bp 0.547566073557971 0.784688752384281 NA NA prediction 0.47424535765262 Functional Gain - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71507121 chr11:71507123 nonsynonymous SNV 0.023 0 19 hm6Am_associated_SNPs_2584 0 0 0 0 1 FAM86C1 chr11:71507171 3'AG 71507171 Downstream 49bp
1160 chrX 11790350 11790350 1 + G A GBM 11790352 + 11790332 11790372 41 CCCTCTTACATTTATGGGGCACAACATTTGCTGCGATTGTT CCCTCTTACATTTATGGGACACAACATTTGCTGCGATTGTT < 41bp 0.542875562261979 0.779988632318502 NA NA prediction 0.474226140113046 Functional Gain - MSL3 ENSG00000005302 CDS Human protein_coding chrX:11790352 chrX:11790350 nonsynonymous SNV 0.991 1 19 hm6Am_associated_SNPs_2586 0 0 0 0 2 MSL3 chrX:11790275 3'AG 11790275 Downstream 76bp
1161 chrX 11790350 11790350 1 + G A GBM 11790352 + 11790332 11790372 41 CCCTCTTACATTTATGGGGCACAACATTTGCTGCGATTGTT CCCTCTTACATTTATGGGACACAACATTTGCTGCGATTGTT < 41bp 0.542875562261979 0.779988632318502 NA NA prediction 0.474226140113046 Functional Gain - MSL3 ENSG00000005302 CDS Human protein_coding chrX:11790352 chrX:11790350 nonsynonymous SNV 0.991 1 19 hm6Am_associated_SNPs_2586 0 0 0 0 2 MSL3 chrX:11790374 5'GT 11790374 Upstream 25bp
1162 chrX 72667510 72667510 1 + G A UCEC 72667512 + 72667492 72667532 41 TCGCTTGTCCCGACGGACGCAGGCGCCGCCAAGGCCAGTTC TCGCTTGTCCCGACGGACACAGGCGCCGCCAAGGCCAGTTC < 41bp 0.483491399513355 0.737023091498113 NA NA prediction 0.474046182996225 Functional Gain - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72667512 chrX:72667510 nonsynonymous SNV 0.006 0 19 hm6Am_associated_SNPs_2590 0 0 0 0 1 CDX4 chrX:72667591 5'GT 72667591 Upstream 82bp
1163 chr15 90799024 90799024 1 + G A STAD 90799026 + 90799006 90799046 41 GCATGACAGAAATCTGCCGCAAAGATCTGCTGGCTCGGAAC GCATGACAGAAATCTGCCACAAAGATCTGCTGGCTCGGAAC < 41bp 0.5543731026155 0.791192512889569 NA NA prediction 0.473638820548138 Functional Gain - TTLL13P ENSG00000213471 CDS Human protein_coding chr15:90799026 chr15:90799024 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_2596 0 0 0 0 1 TTLL13P chr15:90798987 3'AG 90798987 Downstream 38bp
1164 chr20 58560084 58560084 1 + G C COAD 58560083 + 58560063 58560103 41 CTCAGTTTACACTGCTAATCAGAGCCAGGGACTGTGGAGAA CTCAGTTTACACTGCTAATCACAGCCAGGGACTGTGGAGAA < 41bp 0.501644910694165 0.738383136231174 NA NA prediction 0.473476451074017 Functional Gain - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58560083 chr20:58560084 nonsynonymous SNV 0.102 1 22 hm6Am_associated_SNPs_2597 0 0 0 0 1 CDH26 chr20:58560056 3'AG 58560056 Downstream 29bp
1165 chr1 162040006 162040006 1 + G A SKCM 162040008 + 162039988 162040028 41 CAACCTTGTGGACGATGGGCACGACCTGCGGATCCCCTTGC CAACCTTGTGGACGATGGACACGACCTGCGGATCCCCTTGC < 41bp 0.539679764725824 0.77641050022905 NA NA prediction 0.473461471006451 Functional Gain - NOS1AP ENSG00000198929 CDS Human protein_coding chr1:162040008 chr1:162040006 synonymous SNV . 0 19 hm6Am_associated_SNPs_2598 0 0 1 0 1 NOS1AP chr1:162040072 5'GT 162040072 Upstream 67bp
1166 chr6 33589459 33589459 1 + G T UCEC 33589461 + 33589441 33589481 41 CCGTCAATGGCTTCATCAGCACTTTGGGGTGAGTGAGCCGA CCGTCAATGGCTTCATCATCACTTTGGGGTGAGTGAGCCGA < 41bp 0.680169118154742 0.91685707636097 NA NA prediction 0.473375916412457 Functional Gain - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33589461 chr6:33589459 nonsynonymous SNV 1.000 5 19 hm6Am_associated_SNPs_2602 0 0 1 0 1 ITPR3 chr6:33589468 5'GT 33589468 Upstream 10bp
1167 chrX 22010739 22010739 1 + G T LUAD 22010741 + 22010721 22010761 41 TGTGTCAATCTGACAGAAGCACTGTCGCTCTATGAAGAACA TGTGTCAATCTGACAGAATCACTGTCGCTCTATGAAGAACA < 41bp 0.32175209818491 0.736649755752719 NA NA prediction 0.473299511505438 Functional Gain - SMS ENSG00000102172 CDS Human protein_coding chrX:22010741 chrX:22010739 nonsynonymous SNV 0.946 1 19 hm6Am_associated_SNPs_2603 0 0 1 2 2 SMS chrX:22010715 3'AG 22010715 Downstream 25bp
1168 chrX 22010739 22010739 1 + G T LUAD 22010741 + 22010721 22010761 41 TGTGTCAATCTGACAGAAGCACTGTCGCTCTATGAAGAACA TGTGTCAATCTGACAGAATCACTGTCGCTCTATGAAGAACA < 41bp 0.32175209818491 0.736649755752719 NA NA prediction 0.473299511505438 Functional Gain - SMS ENSG00000102172 CDS Human protein_coding chrX:22010741 chrX:22010739 nonsynonymous SNV 0.946 1 19 hm6Am_associated_SNPs_2603 0 0 1 2 2 SMS chrX:22010830 5'GT 22010830 Upstream 92bp
1169 chr14 77294654 77294654 1 + G C rs114437600 77294653 + 77294633 77294673 41 GATGAGATTGAAATTGAGCCAGTACGACAGAGCAGCGATAA GATGAGATTGAAATTGAGCCACTACGACAGAGCAGCGATAA < 41bp 0.500935451786711 0.737551049952224 NA NA prediction 0.473231196331028 Functional Gain - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77294653 chr14:77294654 nonsynonymous SNV 0.000 0 22 hm6Am_associated_SNPs_2605 0 0 0 1 1 LRRC74A chr14:77294634 3'AG 77294634 Downstream 21bp
1170 chr16 58550170 58550170 1 + G A CESC 58550172 + 58550152 58550192 41 GGCGCTGCTCCACGAGCTGCAGGCCCCGGCCTCACGCTGGA GGCGCTGCTCCACGAGCTACAGGCCCCGGCCTCACGCTGGA < 41bp 0.560598060784661 0.797204328863319 NA NA prediction 0.473212536157316 Functional Gain - SETD6 ENSG00000103037 CDS Human protein_coding chr16:58550172 chr16:58550170 nonsynonymous SNV 0.971 1 19 hm6Am_associated_SNPs_2606 0 0 1 0 2 SETD6 chr16:58550106 3'AG 58550106 Downstream 65bp
1171 chr16 58550170 58550170 1 + G A CESC 58550172 + 58550152 58550192 41 GGCGCTGCTCCACGAGCTGCAGGCCCCGGCCTCACGCTGGA GGCGCTGCTCCACGAGCTACAGGCCCCGGCCTCACGCTGGA < 41bp 0.560598060784661 0.797204328863319 NA NA prediction 0.473212536157316 Functional Gain - SETD6 ENSG00000103037 CDS Human protein_coding chr16:58550172 chr16:58550170 nonsynonymous SNV 0.971 1 19 hm6Am_associated_SNPs_2606 0 0 1 0 2 SETD6 chr16:58550247 5'GT 58550247 Upstream 78bp
1172 chr14 104638087 104638087 1 + G T SARC 104638089 + 104638069 104638109 41 ATGCTGCGGATCTGGCCCGCACAGGGGGCCCAGCGCTCGGC ATGCTGCGGATCTGGCCCTCACAGGGGGCCCAGCGCTCGGC < 41bp 0.686826838802838 0.92337140487024 NA NA prediction 0.473089132134803 Functional Gain - KIF26A ENSG00000066735 CDS Human protein_coding chr14:104638089 chr14:104638087 nonsynonymous SNV 0.789 0 19 hm6Am_associated_SNPs_2607 0 0 1 0 1 KIF26A chr14:104638060 3'AG 104638060 Downstream 28bp
1173 chr6 3129325 3129325 1 + G A HNSC 3129327 + 3129307 3129347 41 TGGGGTGGAGTGATGGGGGCATAACCGCACTCATTGCTGCT TGGGGTGGAGTGATGGGGACATAACCGCACTCATTGCTGCT < 41bp 0.552279386137107 0.788686453627216 NA NA prediction 0.472814134980218 Functional Gain - BPHL ENSG00000137274 CDS Human protein_coding chr6:3129327 chr6:3129325 nonsynonymous SNV 0.093 4 19 hm6Am_associated_SNPs_2613 0 0 1 0 1 BPHL chr6:3129279 3'AG 3129279 Downstream 47bp
1174 chr10 99509251 99509251 1 + G T rs35077384 99509253 + 99509233 99509273 41 TCTATGGGGCTCTTCTGGGCACAGTCTGCATGCTGTATTTG TCTATGGGGCTCTTCTGGTCACAGTCTGCATGCTGTATTTG < 41bp 0.694325732323228 0.930729183354881 NA NA prediction 0.472806902063305 Functional Gain - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99509253 chr10:99509251 nonsynonymous SNV 0.896 2 19 hm6Am_associated_SNPs_2614 5 0 1 3 2 ZFYVE27 chr10:99509231 3'AG 99509231 Downstream 21bp
1175 chr10 99509251 99509251 1 + G T rs35077384 99509253 + 99509233 99509273 41 TCTATGGGGCTCTTCTGGGCACAGTCTGCATGCTGTATTTG TCTATGGGGCTCTTCTGGTCACAGTCTGCATGCTGTATTTG < 41bp 0.694325732323228 0.930729183354881 NA NA prediction 0.472806902063305 Functional Gain - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99509253 chr10:99509251 nonsynonymous SNV 0.896 2 19 hm6Am_associated_SNPs_2614 5 0 1 3 2 ZFYVE27 chr10:99509343 5'GT 99509343 Upstream 93bp
1176 chr6 28497326 28497326 1 + G T UCEC 28497328 + 28497308 28497348 41 CAAGCAGTATGTGGGCAAGCACATCCTCTTCGTCAACGTGG CAAGCAGTATGTGGGCAATCACATCCTCTTCGTCAACGTGG < 41bp 0.319118731181317 0.73639714107371 NA NA prediction 0.472794282147419 Functional Gain - GPX5 ENSG00000224586 CDS Human protein_coding chr6:28497328 chr6:28497326 nonsynonymous SNV 0.828 4 19 hm6Am_associated_SNPs_2615 0 0 0 1 2 GPX5 chr6:28497228 3'AG 28497228 Downstream 99bp
1177 chr6 28497326 28497326 1 + G T UCEC 28497328 + 28497308 28497348 41 CAAGCAGTATGTGGGCAAGCACATCCTCTTCGTCAACGTGG CAAGCAGTATGTGGGCAATCACATCCTCTTCGTCAACGTGG < 41bp 0.319118731181317 0.73639714107371 NA NA prediction 0.472794282147419 Functional Gain - GPX5 ENSG00000224586 CDS Human protein_coding chr6:28497328 chr6:28497326 nonsynonymous SNV 0.828 4 19 hm6Am_associated_SNPs_2615 0 0 0 1 2 GPX5 chr6:28497381 5'GT 28497381 Upstream 56bp
1178 chr6 33638956 33638956 1 + G A UCEC 33638958 + 33638938 33638978 41 GCAGGTGGTCAGCCTGGCGCACAATCTCATCTACTTCGGCT GCAGGTGGTCAGCCTGGCACACAATCTCATCTACTTCGGCT < 41bp 0.513594527201982 0.749978103670281 NA NA prediction 0.472767152936599 Functional Gain - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33638958 chr6:33638956 synonymous SNV . 0 19 hm6Am_associated_SNPs_2616 0 0 1 0 1 ITPR3 chr6:33638942 3'AG 33638942 Downstream 15bp
1179 chr11 67800710 67800710 1 + G A SKCM 67800712 + 67800692 67800732 41 CATCCGGGGAGGAGCGTTGCATTGCCTGCAAGCTCTGCGAG CATCCGGGGAGGAGCGTTACATTGCCTGCAAGCTCTGCGAG < 41bp 0.490684087362837 0.73630631406108 NA NA prediction 0.47261262812216 Functional Gain - NDUFS8 ENSG00000110717 CDS Human protein_coding chr11:67800712 chr11:67800710 nonsynonymous SNV 0.957 5 19 hm6Am_associated_SNPs_2619 0 0 1 0 1 NDUFS8 chr11:67800750 5'GT 67800750 Upstream 41bp
1180 chr11 3423077 3423077 1 + G A rs185201301 3423079 + 3423059 3423099 41 CATGAAGCTGGGCGGCACGCACTCTCCGTTCAGGGCCTGGT CATGAAGCTGGGCGGCACACACTCTCCGTTCAGGGCCTGGT < 41bp 0.541942749361551 0.778245579338761 NA NA prediction 0.47260565995442 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3423079 chr11:3423077 . . 0 19 hm6Am_associated_SNPs_2620 0 0 0 0 2 TSSC2 chr11:3422989 3'AG 3422989 Downstream 89bp
1181 chr11 3423077 3423077 1 + G A rs185201301 3423079 + 3423059 3423099 41 CATGAAGCTGGGCGGCACGCACTCTCCGTTCAGGGCCTGGT CATGAAGCTGGGCGGCACACACTCTCCGTTCAGGGCCTGGT < 41bp 0.541942749361551 0.778245579338761 NA NA prediction 0.47260565995442 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3423079 chr11:3423077 . . 0 19 hm6Am_associated_SNPs_2620 0 0 0 0 2 TSSC2 chr11:3423097 5'GT 3423097 Upstream 21bp
1182 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 1 ATP1B3 chr3:141632494 3'AG 141632494 Downstream 48bp
1183 chr16 2226102 2226102 1 + G T LUAD 2226104 + 2226084 2226124 41 CCCTCACGGGCCACGTGGGCACCGTGTATGCCCTGGCGGTC CCCTCACGGGCCACGTGGTCACCGTGTATGCCCTGGCGGTC < 41bp 0.313937765945075 0.736098460121231 NA NA prediction 0.472196920242462 Functional Gain - TRAF7 ENSG00000131653 CDS Human protein_coding chr16:2226104 chr16:2226102 nonsynonymous SNV 0.404 4 19 hm6Am_associated_SNPs_2632 0 0 1 0 1 TRAF7 chr16:2226050 3'AG 2226050 Downstream 53bp
1184 chr9 135116406 135116406 1 + G A LUAD 135116408 + 135116388 135116428 41 CGACGACTGCCTCCCCACGCACTACTGGCGCCAGGGCTGCT CGACGACTGCCTCCCCACACACTACTGGCGCCAGGGCTGCT < 41bp 0.535873826983603 0.771950682913301 NA NA prediction 0.472153711859396 Functional Gain - NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135116408 chr9:135116406 synonymous SNV . 0 19 hm6Am_associated_SNPs_2634 0 0 0 0 1 NTNG2 chr9:135116431 5'GT 135116431 Upstream 26bp
1185 chr17 17041254 17041254 1 + G A COAD 17041256 + 17041236 17041276 41 GCGCCATGAGTAGCGACCGCATGGACTGTGGCCGCAAAGTC GCGCCATGAGTAGCGACCACATGGACTGTGGCCGCAAAGTC < 41bp 0.484523740672053 0.736074063839438 NA NA prediction 0.472148127678876 Functional Gain - MPRIP ENSG00000133030 CDS Human protein_coding chr17:17041256 chr17:17041254 nonsynonymous SNV 0.901 1 19 hm6Am_associated_SNPs_2635 0 0 1 0 1 MPRIP chr17:17041230 3'AG 17041230 Downstream 25bp
1186 chr20 23346300 23346300 1 + G A COAD 23346302 + 23346282 23346322 41 CGCTGCGGCTGCACGAGCGCACACACACGGGAGACCGGCCC CGCTGCGGCTGCACGAGCACACACACACGGGAGACCGGCCC < 41bp 0.548896333104363 0.784949996533101 NA NA prediction 0.472107326857475 Functional Gain - GZF1 ENSG00000125812 CDS Human protein_coding chr20:23346302 chr20:23346300 nonsynonymous SNV 0.991 4 19 hm6Am_associated_SNPs_2638 0 0 0 0 1 GZF1 chr20:23346384 5'GT 23346384 Upstream 85bp
1187 chr3 127783746 127783746 1 + G A COAD 127783748 + 127783728 127783768 41 TTTGAAGGTGCTATCATCGCACTTTTCCATCTGCTGGCCAC TTTGAAGGTGCTATCATCACACTTTTCCATCTGCTGGCCAC < 41bp 0.480009407809702 0.736041071700398 NA NA prediction 0.472082143400795 Functional Gain - SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127783748 chr3:127783746 nonsynonymous SNV 0.019 4 19 hm6Am_associated_SNPs_2639 0 0 1 0 2 SEC61A1 chr3:127783720 3'AG 127783720 Downstream 27bp
1188 chr3 127783746 127783746 1 + G A COAD 127783748 + 127783728 127783768 41 TTTGAAGGTGCTATCATCGCACTTTTCCATCTGCTGGCCAC TTTGAAGGTGCTATCATCACACTTTTCCATCTGCTGGCCAC < 41bp 0.480009407809702 0.736041071700398 NA NA prediction 0.472082143400795 Functional Gain - SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127783748 chr3:127783746 nonsynonymous SNV 0.019 4 19 hm6Am_associated_SNPs_2639 0 0 1 0 2 SEC61A1 chr3:127783781 5'GT 127783781 Upstream 36bp
1189 chr16 89761404 89761404 1 + G A SARC 89761406 + 89761386 89761426 41 GCCCTACAACAACCTGAAGCACAAGTTCCCATGGCTGTCGG GCCCTACAACAACCTGAAACACAAGTTCCCATGGCTGTCGG < 41bp 0.526479952737943 0.762501245182959 NA NA prediction 0.472042584890033 Functional Gain - CDK10 ENSG00000185324 CDS Human protein_coding chr16:89761406 chr16:89761404 synonymous SNV . 0 19 hm6Am_associated_SNPs_2640 0 0 1 1 3 CDK10 chr16:89761339 3'AG 89761339 Downstream 66bp
1190 chr16 89761404 89761404 1 + G A SARC 89761406 + 89761386 89761426 41 GCCCTACAACAACCTGAAGCACAAGTTCCCATGGCTGTCGG GCCCTACAACAACCTGAAACACAAGTTCCCATGGCTGTCGG < 41bp 0.526479952737943 0.762501245182959 NA NA prediction 0.472042584890033 Functional Gain - CDK10 ENSG00000185324 CDS Human protein_coding chr16:89761406 chr16:89761404 synonymous SNV . 0 19 hm6Am_associated_SNPs_2640 0 0 1 1 3 CDK10 chr16:89761460 5'GT 89761460 Upstream 57bp
1191 chr16 89761404 89761404 1 + G A SARC 89761406 + 89761386 89761426 41 GCCCTACAACAACCTGAAGCACAAGTTCCCATGGCTGTCGG GCCCTACAACAACCTGAAACACAAGTTCCCATGGCTGTCGG < 41bp 0.526479952737943 0.762501245182959 NA NA prediction 0.472042584890033 Functional Gain - CDK10 ENSG00000185324 CDS Human protein_coding chr16:89761406 chr16:89761404 synonymous SNV . 0 19 hm6Am_associated_SNPs_2640 0 0 1 1 3 CDK10 chr16:89761478 5'GT 89761478 Upstream 75bp
1192 chr6 147525743 147525743 1 + G A COAD 147525745 + 147525725 147525765 41 GGCGTCGCAGCAGCAACAGCAGCAGCATCCGCCTGGGAACC GGCGTCGCAGCAGCAACAACAGCAGCATCCGCCTGGGAACC < 41bp 0.527314979619016 0.763214577631148 NA NA prediction 0.471799196024264 Functional Gain - STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147525745 chr6:147525743 synonymous SNV . 0 19 hm6Am_associated_SNPs_2643 0 0 1 0 1 STXBP5 chr6:147525818 5'GT 147525818 Upstream 76bp
1193 chr9 139747859 139747859 1 + G A UCEC 139747861 + 139747841 139747881 41 CGAGACAGGGCAGGGGCCGCACTGGAGGGTCCTGGGCCTCA CGAGACAGGGCAGGGGCCACACTGGAGGGTCCTGGGCCTCA < 41bp 0.553850288066199 0.789748888908238 NA NA prediction 0.471797201684077 Functional Gain - MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139747861 chr9:139747859 nonsynonymous SNV 0.002 0 19 hm6Am_associated_SNPs_2644 0 0 1 0 1 MAMDC4 chr9:139747910 5'GT 139747910 Upstream 52bp
1194 chr19 34790617 34790617 1 + G A rs10402156 34790619 + 34790599 34790639 41 CCTTACAAATACATCTGTGCATTCTTGCTTCAGACTTTACA CCTTACAAATACATCTGTACATTCTTGCTTCAGACTTTACA < 41bp 0.517827799888708 0.753700111160463 NA NA prediction 0.471744622543511 Functional Gain - KIAA0355 ENSG00000166398 UTR5 Human protein_coding chr19:34790619 chr19:34790617 . . 0 19 hm6Am_associated_SNPs_2646 0 0 1 0 1 KIAA0355 chr19:34790584 3'AG 34790584 Downstream 34bp
1195 chr19 11015736 11015736 1 + G C CESC 11015735 + 11015715 11015755 41 CTGCAACAGCGTCCTCATCCAGTTCGCCACACCCAACGGTA CTGCAACAGCGTCCTCATCCACTTCGCCACACCCAACGGTA < 41bp 0.484724652244704 0.735820674622598 NA NA prediction 0.471641349245197 Functional Gain - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11015735 chr19:11015736 nonsynonymous SNV 0.981 1 22 hm6Am_associated_SNPs_2648 0 0 1 0 1 CARM1 chr19:11015752 5'GT 11015752 Upstream 17bp
1196 chr2 220505562 220505562 1 + G A PRAD 220505564 + 220505544 220505584 41 ATCCAGCTGGGCTGCATCGCACTGCTCTGGGTGGTCAAGTC ATCCAGCTGGGCTGCATCACACTGCTCTGGGTGGTCAAGTC < 41bp 0.487340826872236 0.735663568258768 NA NA prediction 0.471327136517537 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505564 chr2:220505562 nonsynonymous SNV 0.993 2 19 hm6Am_associated_SNPs_2653 0 0 0 0 1 SLC4A3 chr2:220505511 3'AG 220505511 Downstream 52bp
1197 chr2 272122 272122 1 + G A STAD 272124 + 272104 272144 41 GCTGCATGAAGAGGCACGGCATTCCCATGAGCCACGTTGCC GCTGCATGAAGAGGCACGACATTCCCATGAGCCACGTTGCC < 41bp 0.484319564906703 0.735599931880075 NA NA prediction 0.471199863760151 Functional Gain - ACP1 ENSG00000143727 CDS Human protein_coding chr2:272124 chr2:272122 nonsynonymous SNV 0.776 0 19 hm6Am_associated_SNPs_2657 0 0 1 0 2 ACP1 chr2:272037 3'AG 272037 Downstream 86bp
1198 chr2 272122 272122 1 + G A STAD 272124 + 272104 272144 41 GCTGCATGAAGAGGCACGGCATTCCCATGAGCCACGTTGCC GCTGCATGAAGAGGCACGACATTCCCATGAGCCACGTTGCC < 41bp 0.484319564906703 0.735599931880075 NA NA prediction 0.471199863760151 Functional Gain - ACP1 ENSG00000143727 CDS Human protein_coding chr2:272124 chr2:272122 nonsynonymous SNV 0.776 0 19 hm6Am_associated_SNPs_2657 0 0 1 0 2 ACP1 chr2:272150 5'GT 272150 Upstream 29bp
1199 chr9 95599087 95599087 1 + G A UCEC 95599089 + 95599069 95599109 41 TGGCAGGGATTCACGGGCGCACACACACACACTCAGGATTC TGGCAGGGATTCACGGGCACACACACACACACTCAGGATTC < 41bp 0.531705875167684 0.767273592358277 NA NA prediction 0.471135434381185 Functional Gain - ANKRD19P ENSG00000187984 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:95599089 chr9:95599087 . . 0 19 hm6Am_associated_SNPs_2658 0 0 0 0 1 ANKRD19P chr9:95599059 3'AG 95599059 Downstream 29bp
1200 chr2 10444031 10444031 1 + G T rs13023336 10444033 + 10444013 10444053 41 GACAGGTGAAATGAGAACGCACTGAAGACAGCTCTTGGTCC GACAGGTGAAATGAGAACTCACTGAAGACAGCTCTTGGTCC < 41bp 0.685740079366403 0.921284275890467 NA NA prediction 0.471088393048128 Functional Gain - HPCAL1 ENSG00000115756 UTR5 Human protein_coding chr2:10444033 chr2:10444031 . . 0 19 hm6Am_associated_SNPs_2659 0 0 1 0 1 HPCAL1 chr2:10444068 5'GT 10444068 Upstream 38bp
1201 chr10 135340982 135340982 1 + G T STAD 135340984 + 135340964 135341004 41 TGTGGAGGCAGGTGCACAGCAGCTGGAATCTGCCCCCAGGC TGTGGAGGCAGGTGCACATCAGCTGGAATCTGCCCCCAGGC < 41bp 0.698435971813751 0.933978197733009 NA NA prediction 0.471084451838515 Functional Gain - CYP2E1 ENSG00000130649 CDS Human protein_coding chr10:135340984 chr10:135340982 nonsynonymous SNV 0.931 1 19 hm6Am_associated_SNPs_2660 0 0 0 0 1 CYP2E1 chr10:135341076 5'GT 135341076 Upstream 95bp
1202 chr19 14806418 14806418 1 + G A UCEC 14806420 + 14806400 14806440 41 TTGTGTCTCCCAGCTGGGGCAAAGAGCAGAGCCAAAGGCAA TTGTGTCTCCCAGCTGGGACAAAGAGCAGAGCCAAAGGCAA < 41bp 0.510002429888857 0.745406643220653 NA NA prediction 0.470808426663591 Functional Gain - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14806420 chr19:14806418 synonymous SNV . 0 19 hm6Am_associated_SNPs_2662 0 0 1 0 2 ZNF333 chr19:14806378 3'AG 14806378 Downstream 41bp
1203 chr19 14806418 14806418 1 + G A UCEC 14806420 + 14806400 14806440 41 TTGTGTCTCCCAGCTGGGGCAAAGAGCAGAGCCAAAGGCAA TTGTGTCTCCCAGCTGGGACAAAGAGCAGAGCCAAAGGCAA < 41bp 0.510002429888857 0.745406643220653 NA NA prediction 0.470808426663591 Functional Gain - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14806420 chr19:14806418 synonymous SNV . 0 19 hm6Am_associated_SNPs_2662 0 0 1 0 2 ZNF333 chr19:14806473 5'GT 14806473 Upstream 56bp
1204 chr19 55476703 55476703 1 + G T rs533456357 55476705 + 55476685 55476725 41 ATAGAGCTTTCTCAACCTGCAGCCCTCATCTCCGCCGGCGA ATAGAGCTTTCTCAACCTTCAGCCCTCATCTCCGCCGGCGA < 41bp 0.686680059239513 0.922032817557348 NA NA prediction 0.470705516635671 Functional Gain - NLRP2 ENSG00000022556 UTR5 Human protein_coding chr19:55476705 chr19:55476703 . . 0 19 hm6Am_associated_SNPs_2663 0 0 0 0 1 NLRP2 chr19:55476745 5'GT 55476745 Upstream 43bp
1205 chr1 197890472 197890472 1 + G A LUAD 197890474 + 197890454 197890494 41 GTGCCCGCTGCCACCTTGGCATTTCCGCCTCGGAGATGGTC GTGCCCGCTGCCACCTTGACATTTCCGCCTCGGAGATGGTC < 41bp 0.477209614065772 0.735316279495313 NA NA prediction 0.470632558990627 Functional Gain - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197890474 chr1:197890472 nonsynonymous SNV 1.000 5 19 hm6Am_associated_SNPs_2665 0 0 0 0 1 LHX9 chr1:197890434 3'AG 197890434 Downstream 39bp
1206 chr1 206972299 206972299 1 + G A ESCA 206972301 + 206972281 206972321 41 CTTACCACTCACACATGTGCACACACATATCCATGTGTGTG CTTACCACTCACACATGTACACACACATATCCATGTGTGTG < 41bp 0.547196310799936 0.782492915409482 NA NA prediction 0.470593209219091 Functional Gain - IL19 ENSG00000142224 CDS Human protein_coding chr1:206972301 chr1:206972299 synonymous SNV . 0 19 hm6Am_associated_SNPs_2667 0 0 0 0 1 IL19 chr1:206972351 5'GT 206972351 Upstream 53bp
1207 chr15 25449381 25449381 1 + G A rs544437648 25449383 + 25449363 25449403 41 TCAGTGTTCGTCAGCCTGGCATCCAGCCCCTGGTGTGCTGA TCAGTGTTCGTCAGCCTGACATCCAGCCCCTGGTGTGCTGA < 41bp 0.516317014617067 0.75157869279618 NA NA prediction 0.470523356358225 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25449383 chr15:25449381 . . 0 19 hm6Am_associated_SNPs_2672 0 0 0 0 2 SNHG14 chr15:25449317 3'AG 25449317 Downstream 65bp
1208 chr15 25449381 25449381 1 + G A rs544437648 25449383 + 25449363 25449403 41 TCAGTGTTCGTCAGCCTGGCATCCAGCCCCTGGTGTGCTGA TCAGTGTTCGTCAGCCTGACATCCAGCCCCTGGTGTGCTGA < 41bp 0.516317014617067 0.75157869279618 NA NA prediction 0.470523356358225 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25449383 chr15:25449381 . . 0 19 hm6Am_associated_SNPs_2672 0 0 0 0 2 SNHG14 chr15:25449447 5'GT 25449447 Upstream 67bp
1209 chr19 17599665 17599665 1 + G A PRAD 17599667 + 17599647 17599687 41 CCCCCTGCAGGTACTACCGCATGGCAGCCTTCGGCCACCAC CCCCCTGCAGGTACTACCACATGGCAGCCTTCGGCCACCAC < 41bp 0.556058859641132 0.791294809468149 NA NA prediction 0.470471899654034 Functional Gain - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17599667 chr19:17599665 nonsynonymous SNV 0.998 3 19 hm6Am_associated_SNPs_2674 0 0 0 0 2 SLC27A1 chr19:17599657 3'AG 17599657 Downstream 9bp
1210 chr19 17599665 17599665 1 + G A PRAD 17599667 + 17599647 17599687 41 CCCCCTGCAGGTACTACCGCATGGCAGCCTTCGGCCACCAC CCCCCTGCAGGTACTACCACATGGCAGCCTTCGGCCACCAC < 41bp 0.556058859641132 0.791294809468149 NA NA prediction 0.470471899654034 Functional Gain - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17599667 chr19:17599665 nonsynonymous SNV 0.998 3 19 hm6Am_associated_SNPs_2674 0 0 0 0 2 SLC27A1 chr19:17599748 5'GT 17599748 Upstream 84bp
1211 chr5 102518985 102518985 1 + G A UCEC 102518987 + 102518967 102519007 41 GGGTACTGGTACCTGGCTGCATTATACCAGTGGTGTGGGTA GGGTACTGGTACCTGGCTACATTATACCAGTGGTGTGGGTA < 41bp 0.523948748164472 0.758967056151889 NA NA prediction 0.470036615974835 Functional Gain - PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102518987 chr5:102518985 synonymous SNV . 0 19 hm6Am_associated_SNPs_2678 0 0 1 0 1 PPIP5K2 chr5:102518935 3'AG 102518935 Downstream 51bp
1212 chr19 18279572 18279572 1 + G A STAD 18279574 + 18279554 18279594 41 GGACGAGGACGATCTCCCGCACCACGAGGAACGCACTTGGT GGACGAGGACGATCTCCCACACCACGAGGAACGCACTTGGT < 41bp 0.476917118364208 0.734939500554999 NA NA prediction 0.469879001109997 Functional Gain - PIK3R2 ENSG00000105647;ENSG00000268173 CDS Human other chr19:18279574 chr19:18279572 synonymous SNV . 0 19 hm6Am_associated_SNPs_2681 0 0 1 0 1 PIK3R2 chr19:18279536 3'AG 18279536 Downstream 37bp
1213 chr3 135825088 135825088 1 + G C BLCA 135825087 + 135825067 135825107 41 AACGATGGGCCTGAGCCCTCAGACTGGGACCGGTTTGCCGC AACGATGGGCCTGAGCCCTCACACTGGGACCGGTTTGCCGC < 41bp 0.524258189575333 0.75913891571033 NA NA prediction 0.469761452269995 Functional Gain - PPP2R3A ENSG00000073711 CDS Human protein_coding chr3:135825087 chr3:135825088 nonsynonymous SNV 0.994 4 22 hm6Am_associated_SNPs_2682 0 0 0 0 1 PPP2R3A chr3:135825058 3'AG 135825058 Downstream 31bp
1214 chr14 96120882 96120882 1 + G A rs576209520 96120884 + 96120864 96120904 41 AGGCCAGAGTGCAGTGGTGCAATCACGGCTCACTGTAGTCT AGGCCAGAGTGCAGTGGTACAATCACGGCTCACTGTAGTCT < 41bp 0.507277398481351 0.742128210611617 NA NA prediction 0.469701624260532 Functional Gain - TCL6 ENSG00000187621 ncRNA_exonic Human processed_transcript chr14:96120884 chr14:96120882 . . 0 19 hm6Am_associated_SNPs_2685 0 0 0 0 1 TCL6 chr14:96120846 3'AG 96120846 Downstream 37bp
1215 chr17 61558941 61558941 1 + G A UCEC 61558943 + 61558923 61558963 41 CCAGGGCTGGAACGCCACGCACATGTTCCGGGTGGCAGAGG CCAGGGCTGGAACGCCACACACATGTTCCGGGTGGCAGAGG < 41bp 0.557707337481694 0.792526112527303 NA NA prediction 0.469637550091218 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61558943 chr17:61558941 synonymous SNV . 0 19 hm6Am_associated_SNPs_2688 0 0 0 0 1 ACE chr17:61558927 3'AG 61558927 Downstream 15bp
1216 chr8 39871174 39871174 1 + G C LUAD 39871173 + 39871153 39871193 41 CTCCGGCGGGAGTGCAGCTCAGAGCACAGTGCTTCATGCCT CTCCGGCGGGAGTGCAGCTCACAGCACAGTGCTTCATGCCT < 41bp 0.536079544709713 0.770874988501959 NA NA prediction 0.469590887584492 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39871173 chr8:39871174 nonsynonymous SNV 0.995 4 22 hm6Am_associated_SNPs_2690 0 0 0 0 2 IDO2 chr8:39871084 3'AG 39871084 Downstream 91bp
1217 chr8 39871174 39871174 1 + G C LUAD 39871173 + 39871153 39871193 41 CTCCGGCGGGAGTGCAGCTCAGAGCACAGTGCTTCATGCCT CTCCGGCGGGAGTGCAGCTCACAGCACAGTGCTTCATGCCT < 41bp 0.536079544709713 0.770874988501959 NA NA prediction 0.469590887584492 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39871173 chr8:39871174 nonsynonymous SNV 0.995 4 22 hm6Am_associated_SNPs_2690 0 0 0 0 2 IDO2 chr8:39871232 5'GT 39871232 Upstream 59bp
1218 chr19 11660184 11660184 1 + G A UCEC 11660186 + 11660166 11660206 41 AGGGCATGACGGCCTATGGCACCCGGCGCCACCTCTACGAC AGGGCATGACGGCCTATGACACCCGGCGCCACCTCTACGAC < 41bp 0.561858217011753 0.796567414794918 NA NA prediction 0.469418395566329 Functional Gain - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11660186 chr19:11660184 nonsynonymous SNV 0.768 5 19 hm6Am_associated_SNPs_2695 0 0 0 0 1 CNN1 chr19:11660138 3'AG 11660138 Downstream 47bp
1219 chr19 18277972 18277972 1 + G A COAD 18277974 + 18277954 18277994 41 CCGAGCGGCTCAAGTCCCGCATTGCCGAGATCCATGAGAGC CCGAGCGGCTCAAGTCCCACATTGCCGAGATCCATGAGAGC < 41bp 0.560129364844684 0.79480696393301 NA NA prediction 0.469355198176652 Functional Gain - PIK3R2 ENSG00000105647;ENSG00000268173 CDS Human other chr19:18277974 chr19:18277972 nonsynonymous SNV 0.629 4 19 hm6Am_associated_SNPs_2696 0 0 1 0 1 PIK3R2 chr19:18277940 3'AG 18277940 Downstream 33bp
1220 chr20 37356096 37356096 1 + G A UCEC 37356098 + 37356078 37356118 41 GCCTCTCCGCCCCACAGGGCATGTTCGTGCTGGGCCTACCC GCCTCTCCGCCCCACAGGACATGTTCGTGCTGGGCCTACCC < 41bp 0.539389879231024 0.773796585747025 NA NA prediction 0.468813413032003 Functional Gain - SLC32A1 ENSG00000101438 CDS Human protein_coding chr20:37356098 chr20:37356096 nonsynonymous SNV 0.997 4 19 hm6Am_associated_SNPs_2703 0 0 0 0 1 SLC32A1 chr20:37356095 3'AG 37356095 Downstream 2bp
1221 chr17 42267940 42267940 1 + G A UCEC 42267942 + 42267922 42267962 41 TGCTACAAGACCCAGCCCGCACACTGCGTTCTCTGAACATT TGCTACAAGACCCAGCCCACACACTGCGTTCTCTGAACATT < 41bp 0.534002681416297 0.768405776605829 NA NA prediction 0.468806190379065 Functional Gain - TMUB2 ENSG00000168591 CDS Human protein_coding chr17:42267942 chr17:42267940 nonsynonymous SNV 0.983 2 19 hm6Am_associated_SNPs_2704 0 0 1 0 1 TMUB2 chr17:42267869 3'AG 42267869 Downstream 72bp
1222 chr17 61586564 61586564 1 + G A rs111350007 61586566 + 61586546 61586586 41 ACCTGCACACCTACGTGCGCAGGGCCCTCCACCGCCACTAT ACCTGCACACCTACGTGCACAGGGCCCTCCACCGCCACTAT < 41bp 0.51521148686414 0.749590286026729 NA NA prediction 0.468757598325179 Functional Gain - ACE;KCNH6 ENSG00000224353 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:61586566 chr17:61586564 . . 0 19 hm6Am_associated_SNPs_2705 0 0 0 0 1 ACE;KCNH6 chr17:61586635 5'GT 61586635 Upstream 72bp
1223 chr8 38261966 38261966 1 + G A LUSC 38261968 + 38261948 38261988 41 CCCTTTTGCTCCTGTCCCGCACCTTCTACCTGATAGATGTG CCCTTTTGCTCCTGTCCCACACCTTCTACCTGATAGATGTG < 41bp 0.552501988518567 0.786809911164337 NA NA prediction 0.46861584529154 Functional Gain - LETM2 ENSG00000165046 CDS Human protein_coding chr8:38261968 chr8:38261966 nonsynonymous SNV 0.921 4 19 hm6Am_associated_SNPs_2708 0 0 0 0 2 LETM2 chr8:38261911 3'AG 38261911 Downstream 56bp
1224 chr8 38261966 38261966 1 + G A LUSC 38261968 + 38261948 38261988 41 CCCTTTTGCTCCTGTCCCGCACCTTCTACCTGATAGATGTG CCCTTTTGCTCCTGTCCCACACCTTCTACCTGATAGATGTG < 41bp 0.552501988518567 0.786809911164337 NA NA prediction 0.46861584529154 Functional Gain - LETM2 ENSG00000165046 CDS Human protein_coding chr8:38261968 chr8:38261966 nonsynonymous SNV 0.921 4 19 hm6Am_associated_SNPs_2708 0 0 0 0 2 LETM2 chr8:38262024 5'GT 38262024 Upstream 59bp
1225 chr14 65041242 65041242 1 + G A STAD 65041244 + 65041224 65041264 41 AGCACAGAGGTACTTGGCGCAGAAGTACTGTATCCTTGTGC AGCACAGAGGTACTTGGCACAGAAGTACTGTATCCTTGTGC < 41bp 0.552607439855398 0.786814722866552 NA NA prediction 0.468414566022307 Functional Gain - PPP1R36 ENSG00000165807 CDS Human protein_coding chr14:65041244 chr14:65041242 synonymous SNV . 0 19 hm6Am_associated_SNPs_2709 0 0 0 0 2 PPP1R36 chr14:65041173 3'AG 65041173 Downstream 70bp
1226 chr14 65041242 65041242 1 + G A STAD 65041244 + 65041224 65041264 41 AGCACAGAGGTACTTGGCGCAGAAGTACTGTATCCTTGTGC AGCACAGAGGTACTTGGCACAGAAGTACTGTATCCTTGTGC < 41bp 0.552607439855398 0.786814722866552 NA NA prediction 0.468414566022307 Functional Gain - PPP1R36 ENSG00000165807 CDS Human protein_coding chr14:65041244 chr14:65041242 synonymous SNV . 0 19 hm6Am_associated_SNPs_2709 0 0 0 0 2 PPP1R36 chr14:65041307 5'GT 65041307 Upstream 66bp
1227 chr19 4345772 4345772 1 + G C BLCA 4345771 + 4345751 4345791 41 TTCCTGGGCGACCTGCAGCCAGACGGAAGGATCATGTGGCA TTCCTGGGCGACCTGCAGCCACACGGAAGGATCATGTGGCA < 41bp 0.544015681499061 0.77804760713116 NA NA prediction 0.468063851264197 Functional Gain - MPND ENSG00000008382 CDS Human protein_coding chr19:4345771 chr19:4345772 nonsynonymous SNV 0.528 4 22 hm6Am_associated_SNPs_2714 0 0 1 0 1 MPND chr19:4345742 3'AG 4345742 Downstream 31bp
1228 chr2 98340517 98340517 1 + G A UCEC 98340519 + 98340499 98340539 41 GATGCCAGACCCCGCGGCGCACCTGCCCTTCTTCTACGGCA GATGCCAGACCCCGCGGCACACCTGCCCTTCTTCTACGGCA < 41bp 0.553300819427553 0.787295404390849 NA NA prediction 0.467989169926592 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98340519 chr2:98340517 synonymous SNV . 0 19 hm6Am_associated_SNPs_2717 0 0 0 0 1 ZAP70 chr2:98340479 3'AG 98340479 Downstream 39bp
1229 chr20 43344039 43344039 1 + G A rs147686268 43344041 + 43344021 43344061 41 CTGCAGGGGACATGAGAGGCACACCGAAGACCCACCTCCTG CTGCAGGGGACATGAGAGACACACCGAAGACCCACCTCCTG < 41bp 0.555382028852724 0.78935712862181 NA NA prediction 0.46795019953817 Functional Gain - WISP2 ENSG00000064205 CDS Human protein_coding chr20:43344041 chr20:43344039 nonsynonymous SNV 0.365 0 19 hm6Am_associated_SNPs_2718 0 0 1 0 1 WISP2 chr20:43344091 5'GT 43344091 Upstream 53bp
1230 chr14 105926703 105926703 1 + G A UCEC 105926705 + 105926685 105926725 41 CTTTCCCCAGCTCTGTGGGCACCTTCGCACGGGCCCTGGAC CTTTCCCCAGCTCTGTGGACACCTTCGCACGGGCCCTGGAC < 41bp 0.560780358727954 0.794678663103934 NA NA prediction 0.46779660875196 Functional Gain - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105926705 chr14:105926703 nonsynonymous SNV 0.906 4 19 hm6Am_associated_SNPs_2720 0 0 1 0 2 MTA1 chr14:105926695 3'AG 105926695 Downstream 9bp
1231 chr14 105926703 105926703 1 + G A UCEC 105926705 + 105926685 105926725 41 CTTTCCCCAGCTCTGTGGGCACCTTCGCACGGGCCCTGGAC CTTTCCCCAGCTCTGTGGACACCTTCGCACGGGCCCTGGAC < 41bp 0.560780358727954 0.794678663103934 NA NA prediction 0.46779660875196 Functional Gain - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105926705 chr14:105926703 nonsynonymous SNV 0.906 4 19 hm6Am_associated_SNPs_2720 0 0 1 0 2 MTA1 chr14:105926794 5'GT 105926794 Upstream 92bp
1232 chr7 73535262 73535262 1 + G A UCEC 73535264 + 73535244 73535284 41 ACCCTGACTACCTGCCCCGCACCATGGACTTTGGCCTCAAC ACCCTGACTACCTGCCCCACACCATGGACTTTGGCCTCAAC < 41bp 0.544775647918661 0.778612616687239 NA NA prediction 0.467673937537156 Functional Gain - LIMK1 ENSG00000106683 CDS Human protein_coding chr7:73535264 chr7:73535262 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_2722 0 0 1 0 1 LIMK1 chr7:73535222 3'AG 73535222 Downstream 41bp
1233 chr11 93862563 93862563 1 - C T COAD 93862561 - 93862541 93862581 41 CCACAGCCAGCTCCAGTCGCAGCCCCTTGAACTTGGGCTCC CCACAGCCAGCTCCAGTCACAGCCCCTTGAACTTGGGCTCC < 41bp 0.555788154209872 0.789507778579145 NA NA prediction 0.467439248738545 Functional Gain - PANX1 ENSG00000110218 CDS Human protein_coding chr11:93862561 chr11:93862563 stopgain 0.998 1 19 hm6Am_associated_SNPs_2727 0 0 0 0 1 PANX1 chr11:93862495 5'GT 93862495 Upstream 69bp
1234 chr16 67695886 67695886 1 + G A CESC 67695888 + 67695868 67695908 41 GGCCAGTGGCACCCCTGCGCACCCGGCCACCCTTGCTAATC GGCCAGTGGCACCCCTGCACACCCGGCCACCCTTGCTAATC < 41bp 0.533455210050937 0.767064222684662 NA NA prediction 0.46721802526745 Functional Gain - PARD6A ENSG00000102981 CDS Human protein_coding chr16:67695888 chr16:67695886 nonsynonymous SNV 0.985 2 19 hm6Am_associated_SNPs_2733 0 0 1 0 2 PARD6A chr16:67695796 3'AG 67695796 Downstream 91bp
1235 chr16 67695886 67695886 1 + G A CESC 67695888 + 67695868 67695908 41 GGCCAGTGGCACCCCTGCGCACCCGGCCACCCTTGCTAATC GGCCAGTGGCACCCCTGCACACCCGGCCACCCTTGCTAATC < 41bp 0.533455210050937 0.767064222684662 NA NA prediction 0.46721802526745 Functional Gain - PARD6A ENSG00000102981 CDS Human protein_coding chr16:67695888 chr16:67695886 nonsynonymous SNV 0.985 2 19 hm6Am_associated_SNPs_2733 0 0 1 0 2 PARD6A chr16:67695799 3'AG 67695799 Downstream 88bp
1236 chr19 45208902 45208902 1 + G T GBM 45208904 + 45208884 45208924 41 TCCAGGATTCCACCACCCGCACAGGCTGCACCATCAAAGTT TCCAGGATTCCACCACCCTCACAGGCTGCACCATCAAAGTT < 41bp 0.310228839377743 0.733519438395974 NA NA prediction 0.467038876791948 Functional Gain - CEACAM16 ENSG00000213892 CDS Human protein_coding chr19:45208904 chr19:45208902 nonsynonymous SNV 0.998 1 19 hm6Am_associated_SNPs_2734 0 0 0 0 1 CEACAM16 chr19:45208860 3'AG 45208860 Downstream 43bp
1237 chr6 42897448 42897448 1 + G A rs557189734 42897450 + 42897430 42897470 41 ACTGGGTTCGCCTGCCCAGCAAATGCGAAGGTGAGGAGGCG ACTGGGTTCGCCTGCCCAACAAATGCGAAGGTGAGGAGGCG < 41bp 0.553855332272125 0.787359884308963 NA NA prediction 0.467009104073675 Functional Gain - CNPY3;CNPY3-GNMT ENSG00000137161 CDS Human protein_coding chr6:42897450 chr6:42897448 nonsynonymous SNV 0.990 1 19 hm6Am_associated_SNPs_2735 0 0 1 0 1 CNPY3;CNPY3-GNMT chr6:42897459 5'GT 42897459 Upstream 12bp
1238 chr1 47571815 47571815 1 + G C CESC 47571814 + 47571794 47571834 41 ACCCAGGGAACACCTGAGCCAGATGCCTTACACCACGATGT ACCCAGGGAACACCTGAGCCACATGCCTTACACCACGATGT < 41bp 0.563230729006584 0.79672024906784 NA NA prediction 0.466979040122512 Functional Gain - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47571814 chr1:47571815 nonsynonymous SNV 0.094 1 22 hm6Am_associated_SNPs_2738 0 0 0 0 1 CYP4Z1 chr1:47571800 3'AG 47571800 Downstream 16bp
1239 chr20 35219355 35219355 1 + G C OV 35219354 + 35219334 35219374 41 GCCCGGCGGCGGCTTCTCCCAGACATGCTTCGGAAGGATGG GCCCGGCGGCGGCTTCTCCCACACATGCTTCGGAAGGATGG < 41bp 0.481967625723202 0.733408743136856 NA NA prediction 0.466817486273711 Functional Gain - TGIF2 ENSG00000118707 CDS Human protein_coding chr20:35219354 chr20:35219355 nonsynonymous SNV 0.997 5 22 hm6Am_associated_SNPs_2742 0 0 1 0 1 TGIF2 chr20:35219313 3'AG 35219313 Downstream 43bp
1240 chr7 769361 769361 1 + G T UCEC 769363 + 769343 769383 41 GCAGACCATCTCCCACCAGCACTGGAAGGTCCGTGTGGCCG GCAGACCATCTCCCACCATCACTGGAAGGTCCGTGTGGCCG < 41bp 0.30334050964512 0.73335633347155 NA NA prediction 0.466712666943099 Functional Gain - DNAAF5 ENSG00000164818;ENSG00000164818 exonic;splicing Human protein_coding chr7:769363 chr7:769361 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_2743 0 0 1 0 1 DNAAF5 chr7:769300 3'AG 769300 Downstream 62bp
1241 chr9 139752143 139752143 1 + G A COAD 139752145 + 139752125 139752165 41 GTGGACACAAGCCCAGACGCACTACCCCGGGGCCAGACGGC GTGGACACAAGCCCAGACACACTACCCCGGGGCCAGACGGC < 41bp 0.474488816941084 0.733334427860052 NA NA prediction 0.466668855720103 Functional Gain - MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139752145 chr9:139752143 nonsynonymous SNV 0.003 1 19 hm6Am_associated_SNPs_2745 0 0 1 0 1 MAMDC4 chr9:139752111 3'AG 139752111 Downstream 33bp
1242 chr10 94828127 94828127 1 + G A STAD 94828129 + 94828109 94828149 41 GTATAGCATCCGGGACACGCACGAGACGGCTGCGGTGTACC GTATAGCATCCGGGACACACACGAGACGGCTGCGGTGTACC < 41bp 0.549557674311022 0.782813434665097 NA NA prediction 0.46651152070815 Functional Gain - CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94828129 chr10:94828127 synonymous SNV . 0 19 hm6Am_associated_SNPs_2748 0 0 0 0 1 CYP26C1 chr10:94828077 3'AG 94828077 Downstream 51bp
1243 chr11 64787945 64787945 1 + G A UCEC 64787947 + 64787927 64787967 41 AAGCAGGACCTGCCTGGAGCACTGTCCTCTAACGCCATCCG AAGCAGGACCTGCCTGGAACACTGTCCTCTAACGCCATCCG < 41bp 0.562253069994529 0.79548615293227 NA NA prediction 0.466466165875483 Functional Gain - ARL2 ENSG00000213465 CDS Human protein_coding chr11:64787947 chr11:64787945 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_2749 0 0 1 0 2 ARL2 chr11:64787891 3'AG 64787891 Downstream 55bp
1244 chr11 64787945 64787945 1 + G A UCEC 64787947 + 64787927 64787967 41 AAGCAGGACCTGCCTGGAGCACTGTCCTCTAACGCCATCCG AAGCAGGACCTGCCTGGAACACTGTCCTCTAACGCCATCCG < 41bp 0.562253069994529 0.79548615293227 NA NA prediction 0.466466165875483 Functional Gain - ARL2 ENSG00000213465 CDS Human protein_coding chr11:64787947 chr11:64787945 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_2749 0 0 1 0 2 ARL2 chr11:64787971 5'GT 64787971 Upstream 27bp
1245 chr20 17581394 17581394 1 + G T PRAD 17581396 + 17581376 17581416 41 ATCATAGGCCTCAGGAGTGCAAGTAGCTGATGAAGTATGTC ATCATAGGCCTCAGGAGTTCAAGTAGCTGATGAAGTATGTC < 41bp 0.609129962411029 0.842179680345722 NA NA prediction 0.466099435869386 Functional Gain - DSTN ENSG00000125868 CDS Human protein_coding chr20:17581396 chr20:17581394 synonymous SNV . 0 19 hm6Am_associated_SNPs_2756 0 0 1 0 1 DSTN chr20:17581383 3'AG 17581383 Downstream 12bp
1246 chr16 69355028 69355028 1 + G A UCEC 69355030 + 69355010 69355050 41 TCCGGTTGCATCTCGGGAGCACTCCCCACAACCTCACGGAT TCCGGTTGCATCTCGGGAACACTCCCCACAACCTCACGGAT < 41bp 0.562761930739756 0.795732019123135 NA NA prediction 0.465940176766759 Functional Gain - VPS4A ENSG00000132612 CDS Human protein_coding chr16:69355030 chr16:69355028 nonsynonymous SNV 0.987 2 19 hm6Am_associated_SNPs_2757 0 0 1 0 1 VPS4A chr16:69354954 3'AG 69354954 Downstream 75bp
1247 chr19 5111407 5111407 1 + G A STAD 5111409 + 5111389 5111429 41 CCCTCCCTGCGTATCGCCGCACAGACCCTCCCAGCCAGGTA CCCTCCCTGCGTATCGCCACACAGACCCTCCCAGCCAGGTA < 41bp 0.476312762638819 0.732918894390606 NA NA prediction 0.465837788781212 Functional Gain - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5111409 chr19:5111407 synonymous SNV . 0 19 hm6Am_associated_SNPs_2761 0 0 1 0 1 KDM4B chr19:5111386 3'AG 5111386 Downstream 22bp
1248 chr10 87403926 87403926 1 + G A rs566608165 87403928 + 87403908 87403948 41 TGCTTGGTCTGGACTTACGCATTTGGAAGAGTAGGGAGGTG TGCTTGGTCTGGACTTACACATTTGGAAGAGTAGGGAGGTG < 41bp 0.524339031832007 0.75722980252038 NA NA prediction 0.465781541376745 Functional Gain - GRID1 ENSG00000270002 ncRNA_exonic Human antisense chr10:87403928 chr10:87403926 . . 0 19 hm6Am_associated_SNPs_2762 0 0 0 0 1 GRID1 chr10:87403945 5'GT 87403945 Upstream 20bp
1249 chr11 117282579 117282579 1 + G A PRAD 117282581 + 117282561 117282601 41 GCAGCACCACCTTTCAGGGCATAATTGAGGCCAACCGGAGG GCAGCACCACCTTTCAGGACATAATTGAGGCCAACCGGAGG < 41bp 0.552645316548768 0.785504349063544 NA NA prediction 0.465718065029551 Functional Gain - CEP164 ENSG00000110274 CDS Human protein_coding chr11:117282581 chr11:117282579 nonsynonymous SNV 0.067 0 19 hm6Am_associated_SNPs_2763 0 0 1 1 1 CEP164 chr11:117282511 3'AG 117282511 Downstream 69bp
1250 chr12 96900801 96900801 1 + G T rs61730867 96900803 + 96900783 96900823 41 ATCTGTGGTCCAGTGTCTGCATATCTTGTCCTCCTTAAGGC ATCTGTGGTCCAGTGTCTTCATATCTTGTCCTCCTTAAGGC < 41bp 0.699127585313443 0.931984876141556 NA NA prediction 0.465714581656225 Functional Gain - CFAP54 ENSG00000188596 CDS Human protein_coding chr12:96900803 chr12:96900801 synonymous SNV . 0 19 hm6Am_associated_SNPs_2764 0 0 1 0 2 CFAP54 chr12:96900706 3'AG 96900706 Downstream 96bp
1251 chr12 96900801 96900801 1 + G T rs61730867 96900803 + 96900783 96900823 41 ATCTGTGGTCCAGTGTCTGCATATCTTGTCCTCCTTAAGGC ATCTGTGGTCCAGTGTCTTCATATCTTGTCCTCCTTAAGGC < 41bp 0.699127585313443 0.931984876141556 NA NA prediction 0.465714581656225 Functional Gain - CFAP54 ENSG00000188596 CDS Human protein_coding chr12:96900803 chr12:96900801 synonymous SNV . 0 19 hm6Am_associated_SNPs_2764 0 0 1 0 2 CFAP54 chr12:96900877 5'GT 96900877 Upstream 77bp
1252 chr17 74078598 74078598 1 + G A COAD 74078600 + 74078580 74078620 41 GGCCTGAGACTGCTGACCGCATCTTCTTCCTCGTGTATGTG GGCCTGAGACTGCTGACCACATCTTCTTCCTCGTGTATGTG < 41bp 0.546636628005727 0.779460456896205 NA NA prediction 0.465647657780955 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74078600 chr17:74078598 nonsynonymous SNV 0.977 0 19 hm6Am_associated_SNPs_2765 0 0 0 0 1 ZACN chr17:74078544 3'AG 74078544 Downstream 55bp
1253 chr22 31521846 31521846 1 + G T UCEC 31521848 + 31521828 31521868 41 TGGCCCTCCCAAGGCTTGGCACACAGAGTACAGGGCCTGGC TGGCCCTCCCAAGGCTTGTCACACAGAGTACAGGGCCTGGC < 41bp 0.32527457843662 0.732593772880459 NA NA prediction 0.465187545760918 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31521848 chr22:31521846 nonsynonymous SNV 0.702 1 19 hm6Am_associated_SNPs_2772 0 0 0 0 1 INPP5J chr22:31521819 3'AG 31521819 Downstream 28bp
1254 chr13 41932483 41932483 1 + G C KIRC 41932482 + 41932462 41932502 41 GACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACT GACAACACTACTCTGGGTTCACTATTTCCTGGCACAGCACT < 41bp 0.572125012259486 0.80464193072038 NA NA prediction 0.465033836921789 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932482 chr13:41932483 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2775 0 0 1 16 1 NAA16 chr13:41932440 3'AG 41932440 Downstream 44bp
1255 chr16 54966435 54966435 1 + G T UCEC 54966437 + 54966417 54966457 41 CCTACGACCACACACCCGGCATGGCGGGCTCCTTGGGGTAC CCTACGACCACACACCCGTCATGGCGGGCTCCTTGGGGTAC < 41bp 0.705157439113258 0.937552790214229 NA NA prediction 0.464790702201942 Functional Gain - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54966437 chr16:54966435 nonsynonymous SNV 0.992 4 19 hm6Am_associated_SNPs_2777 0 0 0 0 1 IRX5 chr16:54966410 3'AG 54966410 Downstream 26bp
1256 chr22 51177797 51177797 1 + G C OV 51177796 + 51177776 51177816 41 GGGCCTGGCCCTGGATGGTCAGCCTCCAGATCTTCACGTAC GGGCCTGGCCCTGGATGGTCACCCTCCAGATCTTCACGTAC < 41bp 0.556552917914517 0.78893811347871 NA NA prediction 0.464770391128386 Functional Gain - ACR ENSG00000100312 CDS Human protein_coding chr22:51177796 chr22:51177797 nonsynonymous SNV 0.998 4 22 hm6Am_associated_SNPs_2778 0 0 0 0 1 ACR chr22:51177699 3'AG 51177699 Downstream 99bp
1257 chr6 30857072 30857072 1 + G C rs2229933 30857074 + 30857054 30857094 41 GGTGGATCTACAACGACTGCACCTGGTGGCTCTGGTGGGCA GGTGGATCTACAACGACTCCACCTGGTGGCTCTGGTGGGCA < 41bp 0.455211282225344 0.732327004603795 NA NA prediction 0.46465400920759 Functional Gain - DDR1 ENSG00000204580 CDS Human protein_coding chr6:30857074 chr6:30857072 synonymous SNV . 0 19 hm6Am_associated_SNPs_2782 0 0 1 0 1 DDR1 chr6:30856979 3'AG 30856979 Downstream 94bp
1258 chr17 60741993 60741993 1 + G C STAD 60741995 + 60741975 60742015 41 TCAGAGTCACCCCGGCTTGCAATACCAGCCTCCCTGCCCAG TCAGAGTCACCCCGGCTTCCAATACCAGCCTCCCTGCCCAG < 41bp 0.38058169735312 0.732324175443605 NA NA prediction 0.464648350887211 Functional Gain - MRC2 ENSG00000011028 CDS Human protein_coding chr17:60741995 chr17:60741993 nonsynonymous SNV 0.997 4 19 hm6Am_associated_SNPs_2783 0 0 0 0 1 MRC2 chr17:60741909 3'AG 60741909 Downstream 85bp
1259 chr11 68780001 68780001 1 + G A rs544054284 68780003 + 68779983 68780023 41 CAACAGCTTCATCAGGCCGCAGGCCTGGGAGAAGGTGGGAC CAACAGCTTCATCAGGCCACAGGCCTGGGAGAAGGTGGGAC < 41bp 0.49109781069649 0.732159287040346 NA NA prediction 0.464318574080691 Functional Gain - MRGPRF-AS1 ENSG00000256508 ncRNA_exonic Human antisense chr11:68780003 chr11:68780001 . . 0 19 hm6Am_associated_SNPs_2788 0 0 0 0 1 MRGPRF-AS1 chr11:68780016 5'GT 68780016 Upstream 16bp
1260 chr2 187559065 187559065 1 + G A PAAD 187559067 + 187559047 187559087 41 GCAACAACAACAACAACAGCAAAAGCAGCTGGAGGAGGCTG GCAACAACAACAACAACAACAAAAGCAGCTGGAGGAGGCTG < 41bp 0.548780303602415 0.78093602051313 NA NA prediction 0.46431143382143 Functional Gain - FAM171B ENSG00000144369 CDS Human protein_coding chr2:187559067 chr2:187559065 synonymous SNV . 0 19 hm6Am_associated_SNPs_2789 0 0 1 0 1 FAM171B chr2:187559138 5'GT 187559138 Upstream 74bp
1261 chr9 37776352 37776352 1 + G C LIHC 37776351 + 37776331 37776371 41 CAATCCAGGAATACATGGTCAGAAACCAGAATGGGAAAAAC CAATCCAGGAATACATGGTCACAAACCAGAATGGGAAAAAC < 41bp 0.466977164799071 0.732009113638165 NA NA prediction 0.464018227276331 Functional Gain - TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37776351 chr9:37776352 nonsynonymous SNV 0.293 2 22 hm6Am_associated_SNPs_2797 0 0 1 0 2 TRMT10B chr9:37776279 3'AG 37776279 Downstream 74bp
1262 chr9 37776352 37776352 1 + G C LIHC 37776351 + 37776331 37776371 41 CAATCCAGGAATACATGGTCAGAAACCAGAATGGGAAAAAC CAATCCAGGAATACATGGTCACAAACCAGAATGGGAAAAAC < 41bp 0.466977164799071 0.732009113638165 NA NA prediction 0.464018227276331 Functional Gain - TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37776351 chr9:37776352 nonsynonymous SNV 0.293 2 22 hm6Am_associated_SNPs_2797 0 0 1 0 2 TRMT10B chr9:37776402 5'GT 37776402 Upstream 51bp
1263 chr9 116053015 116053015 1 + G T STAD 116053017 + 116052997 116053037 41 GTCGAGTTTGGGACCTACGCACAGGACGTTGTATCATGTTC GTCGAGTTTGGGACCTACTCACAGGACGTTGTATCATGTTC < 41bp 0.311380078375332 0.73182753024144 NA NA prediction 0.463655060482879 Functional Gain - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116053017 chr9:116053015 nonsynonymous SNV 0.998 5 19 hm6Am_associated_SNPs_2803 0 0 1 0 2 PRPF4 chr9:116052980 3'AG 116052980 Downstream 36bp
1264 chr9 116053015 116053015 1 + G T STAD 116053017 + 116052997 116053037 41 GTCGAGTTTGGGACCTACGCACAGGACGTTGTATCATGTTC GTCGAGTTTGGGACCTACTCACAGGACGTTGTATCATGTTC < 41bp 0.311380078375332 0.73182753024144 NA NA prediction 0.463655060482879 Functional Gain - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116053017 chr9:116053015 nonsynonymous SNV 0.998 5 19 hm6Am_associated_SNPs_2803 0 0 1 0 2 PRPF4 chr9:116053087 5'GT 116053087 Upstream 73bp
1265 chr16 1033788 1033788 1 + G A UCEC 1033790 + 1033770 1033810 41 AGAGCGCCTTCGCGTGCAGCACAAGAAGGACCACCCCGACT AGAGCGCCTTCGCGTGCAACACAAGAAGGACCACCCCGACT < 41bp 0.472288328282985 0.73182738298772 NA NA prediction 0.46365476597544 Functional Gain - SOX8 ENSG00000005513 CDS Human protein_coding chr16:1033790 chr16:1033788 synonymous SNV . 0 19 hm6Am_associated_SNPs_2804 0 0 0 0 1 SOX8 chr16:1033728 3'AG 1033728 Downstream 61bp
1266 chr2 48573431 48573431 1 + G C BLCA 48573430 + 48573410 48573450 41 AAAGATTGCAGGATTAAGCCAGATTTACAAAATGGGAAGCT AAAGATTGCAGGATTAAGCCACATTTACAAAATGGGAAGCT < 41bp 0.575079268659199 0.80683553733933 NA NA prediction 0.463512537360263 Functional Gain - FOXN2 ENSG00000170802 CDS Human protein_coding chr2:48573430 chr2:48573431 nonsynonymous SNV 1.000 2 22 hm6Am_associated_SNPs_2809 0 0 1 0 1 FOXN2 chr2:48573340 3'AG 48573340 Downstream 92bp
1267 chr6 160222187 160222187 1 + G C BLCA 160222186 + 160222166 160222206 41 GTGGTATCTAAAGACCCGTCAGAGTGTTCAGCAATTTACAG GTGGTATCTAAAGACCCGTCACAGTGTTCAGCAATTTACAG < 41bp 0.490796836035179 0.731599698951202 NA NA prediction 0.463199397902404 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160222186 chr6:160222187 nonsynonymous SNV 0.975 0 22 hm6Am_associated_SNPs_2818 0 0 1 0 2 PNLDC1 chr6:160222145 3'AG 160222145 Downstream 43bp
1268 chr6 160222187 160222187 1 + G C BLCA 160222186 + 160222166 160222206 41 GTGGTATCTAAAGACCCGTCAGAGTGTTCAGCAATTTACAG GTGGTATCTAAAGACCCGTCACAGTGTTCAGCAATTTACAG < 41bp 0.490796836035179 0.731599698951202 NA NA prediction 0.463199397902404 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160222186 chr6:160222187 nonsynonymous SNV 0.975 0 22 hm6Am_associated_SNPs_2818 0 0 1 0 2 PNLDC1 chr6:160222218 5'GT 160222218 Upstream 32bp
1269 chr2 97215111 97215111 1 + G A rs200718643 97215113 + 97215093 97215133 41 GCAGGAGCGGGAGGAGGAGCAGGCCTTCCTGGTCAGCCTCT GCAGGAGCGGGAGGAGGAACAGGCCTTCCTGGTCAGCCTCT < 41bp 0.490871801440409 0.731480204231072 NA NA prediction 0.462960408462143 Functional Gain - ARID5A ENSG00000196843 CDS Human protein_coding chr2:97215113 chr2:97215111 synonymous SNV . 0 19 hm6Am_associated_SNPs_2821 0 0 0 0 1 ARID5A chr2:97215058 3'AG 97215058 Downstream 54bp
1270 chr5 41941337 41941337 1 + G A STAD 41941339 + 41941319 41941359 41 TGACTGGTTTTTTGAATGGCATTGAGTGGATTCTTGAAGAA TGACTGGTTTTTTGAATGACATTGAGTGGATTCTTGAAGAA < 41bp 0.490504530389781 0.731466403523839 NA NA prediction 0.462932807047679 Functional Gain - FBXO4 ENSG00000151876 CDS Human protein_coding chr5:41941339 chr5:41941337 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_2822 0 0 1 0 1 FBXO4 chr5:41941294 3'AG 41941294 Downstream 44bp
1271 chr14 38293137 38293137 1 + G C BLCA 38293136 + 38293116 38293156 41 ATCCAGCATACATAAAAGCCAGAATTAGTTTTGGCTATAAT ATCCAGCATACATAAAAGCCACAATTAGTTTTGGCTATAAT < 41bp 0.509624082920554 0.741006651037087 NA NA prediction 0.462765136233065 Functional Gain - TTC6 ENSG00000139865 CDS Human protein_coding chr14:38293136 chr14:38293137 nonsynonymous SNV 0.999 4 22 hm6Am_associated_SNPs_2828 0 0 0 3 1 TTC6 chr14:38293162 5'GT 38293162 Upstream 26bp
1272 chr3 32860328 32860328 1 + G A UCEC 32860330 + 32860310 32860350 41 TGCCGCAGCAGCGGCGCAGCAGCTCGGGCTCGGGCCGCCCT TGCCGCAGCAGCGGCGCAACAGCTCGGGCTCGGGCCGCCCT < 41bp 0.480045389398081 0.731229539950936 NA NA prediction 0.462459079901872 Functional Gain - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32860330 chr3:32860328 synonymous SNV . 0 19 hm6Am_associated_SNPs_2834 0 0 1 0 1 TRIM71 chr3:32860424 5'GT 32860424 Upstream 97bp
1273 chr16 89961457 89961457 1 + G C BLCA 89961456 + 89961436 89961476 41 CTTCTGGTAGGTTCTGCTCCAGACGAGCCCTTACCACGTTG CTTCTGGTAGGTTCTGCTCCACACGAGCCCTTACCACGTTG < 41bp 0.473193264696865 0.731140874174503 NA NA prediction 0.462281748349006 Functional Gain - TCF25 ENSG00000141002 CDS Human protein_coding chr16:89961456 chr16:89961457 nonsynonymous SNV 0.860 1 22 hm6Am_associated_SNPs_2837 0 0 1 0 2 TCF25 chr16:89961446 3'AG 89961446 Downstream 12bp
1274 chr16 89961457 89961457 1 + G C BLCA 89961456 + 89961436 89961476 41 CTTCTGGTAGGTTCTGCTCCAGACGAGCCCTTACCACGTTG CTTCTGGTAGGTTCTGCTCCACACGAGCCCTTACCACGTTG < 41bp 0.473193264696865 0.731140874174503 NA NA prediction 0.462281748349006 Functional Gain - TCF25 ENSG00000141002 CDS Human protein_coding chr16:89961456 chr16:89961457 nonsynonymous SNV 0.860 1 22 hm6Am_associated_SNPs_2837 0 0 1 0 2 TCF25 chr16:89961545 5'GT 89961545 Upstream 89bp
1275 chr1 55167833 55167833 1 + G A COAD 55167835 + 55167815 55167855 41 AGAAGCTTCGGGCACCACGCACTCAGGCCATGGAGGAGCAG AGAAGCTTCGGGCACCACACACTCAGGCCATGGAGGAGCAG < 41bp 0.575208464686729 0.80631286038648 NA NA prediction 0.462208791399502 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55167835 chr1:55167833 nonsynonymous SNV 0.007 0 19 hm6Am_associated_SNPs_2838 0 0 0 0 3 MROH7 chr1:55167763 3'AG 55167763 Downstream 71bp
1276 chr1 55167833 55167833 1 + G A COAD 55167835 + 55167815 55167855 41 AGAAGCTTCGGGCACCACGCACTCAGGCCATGGAGGAGCAG AGAAGCTTCGGGCACCACACACTCAGGCCATGGAGGAGCAG < 41bp 0.575208464686729 0.80631286038648 NA NA prediction 0.462208791399502 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55167835 chr1:55167833 nonsynonymous SNV 0.007 0 19 hm6Am_associated_SNPs_2838 0 0 0 0 3 MROH7 chr1:55167909 5'GT 55167909 Upstream 77bp
1277 chr1 55167833 55167833 1 + G A COAD 55167835 + 55167815 55167855 41 AGAAGCTTCGGGCACCACGCACTCAGGCCATGGAGGAGCAG AGAAGCTTCGGGCACCACACACTCAGGCCATGGAGGAGCAG < 41bp 0.575208464686729 0.80631286038648 NA NA prediction 0.462208791399502 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55167835 chr1:55167833 nonsynonymous SNV 0.007 0 19 hm6Am_associated_SNPs_2838 0 0 0 0 3 MROH7 chr1:55167918 5'GT 55167918 Upstream 86bp
1278 chr11 70189942 70189942 1 + G A COAD 70189944 + 70189924 70189964 41 CAGCGGGCAGGCCGACGCGCACACACTAGCCATGATGCTTC CAGCGGGCAGGCCGACGCACACACACTAGCCATGATGCTTC < 41bp 0.474412640866165 0.731060833327073 NA NA prediction 0.462121666654147 Functional Gain - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70189944 chr11:70189942 synonymous SNV . 0 19 hm6Am_associated_SNPs_2840 0 0 1 0 1 PPFIA1 chr11:70189998 5'GT 70189998 Upstream 57bp
1279 chr12 121094004 121094004 1 + G A COAD 121094006 + 121093986 121094026 41 ATGCTGGCCCAGAACTGCGCAGTCATGCACAACCTGCTGGG ATGCTGGCCCAGAACTGCACAGTCATGCACAACCTGCTGGG < 41bp 0.549203416076569 0.780173679723591 NA NA prediction 0.461940527294045 Functional Gain - CABP1 ENSG00000157782 CDS Human protein_coding chr12:121094006 chr12:121094004 nonsynonymous SNV 0.925 0 19 hm6Am_associated_SNPs_2844 0 0 0 0 1 CABP1 chr12:121094075 5'GT 121094075 Upstream 72bp
1280 chr12 52695738 52695738 1 + G C rs565104845 52695737 + 52695717 52695757 41 ACTGTGGTGGCCGCGCCTTCAGCTGCATCTCGGCCTGCGGG ACTGTGGTGGCCGCGCCTTCACCTGCATCTCGGCCTGCGGG < 41bp 0.518592767046108 0.749539610792833 NA NA prediction 0.46189368749345 Functional Gain - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695737 chr12:52695738 nonsynonymous SNV 0.974 3 22 hm6Am_associated_SNPs_2845 0 0 0 0 1 KRT86 chr12:52695697 3'AG 52695697 Downstream 42bp
1281 chr4 147561098 147561098 1 + G T UCEC 147561100 + 147561080 147561120 41 TGGACATCGTCTCCCAGAGCAAGAGCCACCACCACCATCCA TGGACATCGTCTCCCAGATCAAGAGCCACCACCACCATCCA < 41bp 0.311009600109137 0.730936259362399 NA NA prediction 0.461872518724798 Functional Gain - POU4F2 ENSG00000151615 CDS Human protein_coding chr4:147561100 chr4:147561098 nonsynonymous SNV 0.999 2 19 hm6Am_associated_SNPs_2847 0 0 0 0 1 POU4F2 chr4:147561019 3'AG 147561019 Downstream 80bp
1282 chr6 43191853 43191853 1 + G C BLCA 43191852 + 43191832 43191872 41 GGATTTCCGGGTTGGTCTTCAGAGTCCATCAGTAGAGGCCT GGATTTCCGGGTTGGTCTTCACAGTCCATCAGTAGAGGCCT < 41bp 0.48673692520955 0.730910352049431 NA NA prediction 0.461820704098862 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43191852 chr6:43191853 nonsynonymous SNV 0.963 3 22 hm6Am_associated_SNPs_2849 0 0 0 0 2 CUL9 chr6:43191833 3'AG 43191833 Downstream 21bp
1283 chr6 43191853 43191853 1 + G C BLCA 43191852 + 43191832 43191872 41 GGATTTCCGGGTTGGTCTTCAGAGTCCATCAGTAGAGGCCT GGATTTCCGGGTTGGTCTTCACAGTCCATCAGTAGAGGCCT < 41bp 0.48673692520955 0.730910352049431 NA NA prediction 0.461820704098862 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43191852 chr6:43191853 nonsynonymous SNV 0.963 3 22 hm6Am_associated_SNPs_2849 0 0 0 0 2 CUL9 chr6:43191906 5'GT 43191906 Upstream 54bp
1284 chr11 71507139 71507139 1 + G C READ 71507138 + 71507118 71507158 41 GGCTGCCTGCCGGGAGCACCAGCGGGCTCCTCAATTCTACA GGCTGCCTGCCGGGAGCACCACCGGGCTCCTCAATTCTACA < 41bp 0.523024315498393 0.75388877304196 NA NA prediction 0.461728915087134 Functional Gain - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71507138 chr11:71507139 nonsynonymous SNV 0.004 0 22 hm6Am_associated_SNPs_2852 0 0 1 0 2 FAM86C1 chr11:71507063 3'AG 71507063 Downstream 77bp
1285 chr11 71507139 71507139 1 + G C READ 71507138 + 71507118 71507158 41 GGCTGCCTGCCGGGAGCACCAGCGGGCTCCTCAATTCTACA GGCTGCCTGCCGGGAGCACCACCGGGCTCCTCAATTCTACA < 41bp 0.523024315498393 0.75388877304196 NA NA prediction 0.461728915087134 Functional Gain - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71507138 chr11:71507139 nonsynonymous SNV 0.004 0 22 hm6Am_associated_SNPs_2852 0 0 1 0 2 FAM86C1 chr11:71507212 5'GT 71507212 Upstream 74bp
1286 chr1 168549321 168549321 1 + G C rs56148248 168549320 + 168549300 168549340 41 GGTGTAGGGAGTGAAGTCTCAGATAAGAGGACCTGTGTGAG GGTGTAGGGAGTGAAGTCTCACATAAGAGGACCTGTGTGAG < 41bp 0.491653946923119 0.730795717845856 NA NA prediction 0.461591435691711 Functional Gain - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168549320 chr1:168549321 nonsynonymous SNV 0.713 0 22 hm6Am_associated_SNPs_2854 0 0 1 0 2 XCL1 chr1:168549301 3'AG 168549301 Downstream 21bp
1287 chr1 168549321 168549321 1 + G C rs56148248 168549320 + 168549300 168549340 41 GGTGTAGGGAGTGAAGTCTCAGATAAGAGGACCTGTGTGAG GGTGTAGGGAGTGAAGTCTCACATAAGAGGACCTGTGTGAG < 41bp 0.491653946923119 0.730795717845856 NA NA prediction 0.461591435691711 Functional Gain - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168549320 chr1:168549321 nonsynonymous SNV 0.713 0 22 hm6Am_associated_SNPs_2854 0 0 1 0 2 XCL1 chr1:168549415 5'GT 168549415 Upstream 95bp
1288 chr3 121976139 121976139 1 + G C LUSC 121976138 + 121976118 121976158 41 GATGAGTTCTGCAACTGCTCAGAGCACATTCCCTCTACGAT GATGAGTTCTGCAACTGCTCACAGCACATTCCCTCTACGAT < 41bp 0.471410597000896 0.730723529276601 NA NA prediction 0.461447058553202 Functional Gain - CASR ENSG00000036828 CDS Human protein_coding chr3:121976138 chr3:121976139 nonsynonymous SNV 0.998 1 22 hm6Am_associated_SNPs_2857 0 0 0 0 1 CASR chr3:121976234 5'GT 121976234 Upstream 96bp
1289 chr10 99519006 99519006 1 + G C BLCA 99519005 + 99518985 99519025 41 CTTTTCAGCCCCTGAAGCCCAGAGGGAGACTGTGTTTGTGT CTTTTCAGCCCCTGAAGCCCACAGGGAGACTGTGTTTGTGT < 41bp 0.531905672156355 0.762506555263882 NA NA prediction 0.461201766215055 Functional Gain - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99519005 chr10:99519006 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_2862 0 0 1 0 1 ZFYVE27 chr10:99518993 3'AG 99518993 Downstream 14bp
1290 chr16 4927402 4927402 1 + G A rs367848284 4927404 + 4927384 4927424 41 AGGTCTTCTGGCTGGCTTGCACTCCAGCCCGCCCCATGCAG AGGTCTTCTGGCTGGCTTACACTCCAGCCCGCCCCATGCAG < 41bp 0.476168102373304 0.730579215814283 NA NA prediction 0.461158431628566 Functional Gain - UBN1 ENSG00000118900 CDS Human protein_coding chr16:4927404 chr16:4927402 synonymous SNV . 0 19 hm6Am_associated_SNPs_2866 0 0 1 0 2 UBN1 chr16:4927386 3'AG 4927386 Downstream 17bp
1291 chr16 4927402 4927402 1 + G A rs367848284 4927404 + 4927384 4927424 41 AGGTCTTCTGGCTGGCTTGCACTCCAGCCCGCCCCATGCAG AGGTCTTCTGGCTGGCTTACACTCCAGCCCGCCCCATGCAG < 41bp 0.476168102373304 0.730579215814283 NA NA prediction 0.461158431628566 Functional Gain - UBN1 ENSG00000118900 CDS Human protein_coding chr16:4927404 chr16:4927402 synonymous SNV . 0 19 hm6Am_associated_SNPs_2866 0 0 1 0 2 UBN1 chr16:4927475 5'GT 4927475 Upstream 74bp
1292 chr19 52207811 52207811 1 + G A rs117031966 52207813 + 52207793 52207833 41 GAGAAGTCTGGGTTCCCAGCAACCTCCAACCCAGGAGGTCA GAGAAGTCTGGGTTCCCAACAACCTCCAACCCAGGAGGTCA < 41bp 0.551819665982775 0.782380884029831 NA NA prediction 0.461122436094111 Functional Gain - SPACA6 ENSG00000182310 ncRNA_exonic Human protein_coding chr19:52207813 chr19:52207811 . . 0 19 hm6Am_associated_SNPs_2868 0 0 0 0 1 SPACA6 chr19:52207829 5'GT 52207829 Upstream 19bp
1293 chr20 3452086 3452086 1 + G A SARC 3452088 + 3452068 3452108 41 GTGTCAACGGCGGTCGCTGCAACCCTGGCACCGGCCAGTGC GTGTCAACGGCGGTCGCTACAACCCTGGCACCGGCCAGTGC < 41bp 0.548717618194331 0.779273935409125 NA NA prediction 0.461112634429588 Functional Gain - ATRN ENSG00000088812 CDS Human protein_coding chr20:3452088 chr20:3452086 nonsynonymous SNV 0.949 4 19 hm6Am_associated_SNPs_2870 0 0 1 0 1 ATRN chr20:3452164 5'GT 3452164 Upstream 79bp
1294 chr1 10386213 10386213 1 + G A GBM 10386215 + 10386195 10386235 41 ACGAGCGCCTTGCCGACCGCACACCCTCCCCCACTTTTTCC ACGAGCGCCTTGCCGACCACACACCCTCCCCCACTTTTTCC < 41bp 0.533759950568576 0.764244031262691 NA NA prediction 0.460968161388229 Functional Gain - KIF1B ENSG00000054523 CDS Human protein_coding chr1:10386215 chr1:10386213 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_2873 0 0 1 0 1 KIF1B chr1:10386169 3'AG 10386169 Downstream 45bp
1295 chr1 107973466 107973466 1 + G A GBM 107973468 + 107973448 107973488 41 ACACAACACTAGAGGGCAGCACTGTGAGTTATGCAGGCTGG ACACAACACTAGAGGGCAACACTGTGAGTTATGCAGGCTGG < 41bp 0.532169395806685 0.762555687848433 NA NA prediction 0.460772584083496 Functional Gain - NTNG1 ENSG00000162631 CDS Human protein_coding chr1:107973468 chr1:107973466 synonymous SNV . 0 19 hm6Am_associated_SNPs_2874 0 0 0 3 2 NTNG1 chr1:107973372 3'AG 107973372 Downstream 95bp
1296 chr1 107973466 107973466 1 + G A GBM 107973468 + 107973448 107973488 41 ACACAACACTAGAGGGCAGCACTGTGAGTTATGCAGGCTGG ACACAACACTAGAGGGCAACACTGTGAGTTATGCAGGCTGG < 41bp 0.532169395806685 0.762555687848433 NA NA prediction 0.460772584083496 Functional Gain - NTNG1 ENSG00000162631 CDS Human protein_coding chr1:107973468 chr1:107973466 synonymous SNV . 0 19 hm6Am_associated_SNPs_2874 0 0 0 3 2 NTNG1 chr1:107973539 5'GT 107973539 Upstream 74bp
1297 chr1 150483405 150483405 1 + G T STAD 150483407 + 150483387 150483427 41 GAACCTGAGTCCTGGAATGCAGCCCAGCACTGCCAACAGGA GAACCTGAGTCCTGGAATTCAGCCCAGCACTGCCAACAGGA < 41bp 0.666352350856612 0.896722462744217 NA NA prediction 0.46074022377521 Functional Gain - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150483407 chr1:150483405 nonsynonymous SNV 0.905 0 19 hm6Am_associated_SNPs_2875 0 0 1 0 1 ECM1 chr1:150483352 3'AG 150483352 Downstream 54bp
1298 chr17 43307992 43307992 1 + G C LUSC 43307991 + 43307971 43308011 41 AACTGCATGAACTTGCCCCCAGACAAGGTCCAGCTGCTGAG AACTGCATGAACTTGCCCCCACACAAGGTCCAGCTGCTGAG < 41bp 0.507246898705913 0.737584129849829 NA NA prediction 0.460674462287832 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43307991 chr17:43307992 nonsynonymous SNV 0.630 5 22 hm6Am_associated_SNPs_2878 0 0 0 0 1 FMNL1 chr17:43308054 5'GT 43308054 Upstream 63bp
1299 chr19 17416747 17416747 1 + G C STAD 17416749 + 17416729 17416769 41 GGCCCCACGAGTAGGTCGGCAGCGTTGCTGGGTGGCAGGTA GGCCCCACGAGTAGGTCGCCAGCGTTGCTGGGTGGCAGGTA < 41bp 0.667029707540261 0.897329149428061 NA NA prediction 0.4605988837756 Functional Gain - MRPL34 ENSG00000130312 CDS Human protein_coding chr19:17416749 chr19:17416747 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_2881 0 0 1 0 1 MRPL34 chr19:17416766 5'GT 17416766 Upstream 20bp
1300 chr1 6642191 6642191 1 + G C BLCA 6642190 + 6642170 6642210 41 AGCCTGAGGCTGTGCTGACCAGGAGGAAGTCAAATGTAATC AGCCTGAGGCTGTGCTGACCACGAGGAAGTCAAATGTAATC < 41bp 0.489460941780237 0.730294155675721 NA NA prediction 0.460588311351442 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6642190 chr1:6642191 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2882 0 0 1 0 1 ZBTB48 chr1:6642118 3'AG 6642118 Downstream 74bp
1301 chr16 56995960 56995960 1 + G A COAD 56995962 + 56995942 56995982 41 CTGCTCCAAAGGCACCTCGCACGAGGCAGGCATCGTGTGCC CTGCTCCAAAGGCACCTCACACGAGGCAGGCATCGTGTGCC < 41bp 0.57807381025979 0.808316524894788 NA NA prediction 0.460485429269997 Functional Gain - CETP ENSG00000087237 CDS Human protein_coding chr16:56995962 chr16:56995960 synonymous SNV . 0 19 hm6Am_associated_SNPs_2886 0 0 0 0 1 CETP chr16:56996009 5'GT 56996009 Upstream 50bp
1302 chr1 170705232 170705232 1 + G T SARC 170705234 + 170705214 170705254 41 TGTGCCAACAATAGCCCTGCACAGGGCATCAACATGGCCAA TGTGCCAACAATAGCCCTTCACAGGGCATCAACATGGCCAA < 41bp 0.323864440378357 0.730206283698715 NA NA prediction 0.46041256739743 Functional Gain - PRRX1 ENSG00000116132 CDS Human protein_coding chr1:170705234 chr1:170705232 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2888 0 0 0 1 1 PRRX1 chr1:170705189 3'AG 170705189 Downstream 44bp
1303 chr14 55868461 55868461 1 + G A rs8007121 55868463 + 55868443 55868483 41 ACAAGGAGAAGGGTGCTCGCACACAGCCCCAGTGGCACCAG ACAAGGAGAAGGGTGCTCACACACAGCCCCAGTGGCACCAG < 41bp 0.538218427964817 0.768359959896297 NA NA prediction 0.46028306386296 Functional Gain - ATG14 ENSG00000126775 intronic Human protein_coding chr14:55868463 chr14:55868461 . . 0 19 hm6Am_associated_SNPs_2892 0 0 0 0 1 ATG14 chr14:55868389 3'AG 55868389 Downstream 73bp
1304 chr4 5754739 5754739 1 + G A KIRP 5754741 + 5754721 5754761 41 GGAGCTGCTCACGCAGCAGCACAAGGCCTTCTGGCAGGAGG GGAGCTGCTCACGCAGCAACACAAGGCCTTCTGGCAGGAGG < 41bp 0.573620065403472 0.803608837292289 NA NA prediction 0.459977543777634 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5754741 chr4:5754739 synonymous SNV . 0 19 hm6Am_associated_SNPs_2899 0 0 1 0 1 EVC chr4:5754779 5'GT 5754779 Upstream 41bp
1305 chr19 58740863 58740863 1 + G A rs148549424 58740865 + 58740845 58740885 41 GAGCCTCCTGGCACAGCGGCACCAGGCAGGTGACGCCTATT GAGCCTCCTGGCACAGCGACACCAGGCAGGTGACGCCTATT < 41bp 0.52664751867557 0.756485202351913 NA NA prediction 0.459675367352685 Functional Gain - ZNF544 ENSG00000198131;ENSG00000269545 UTR5 Human other chr19:58740865 chr19:58740863 . . 0 19 hm6Am_associated_SNPs_2903 0 0 1 1 1 ZNF544 chr19:58740936 5'GT 58740936 Upstream 74bp
1306 chr1 162760622 162760622 1 + G C rs116929795 162760624 + 162760604 162760644 41 TTTTGATCACCGGGGCTAGCAGGTGAGGCCTCCTTTGGGTT TTTTGATCACCGGGGCTACCAGGTGAGGCCTCCTTTGGGTT < 41bp 0.380296502404083 0.729778765549815 NA NA prediction 0.45955753109963 Functional Gain - HSD17B7 ENSG00000132196 CDS Human protein_coding chr1:162760624 chr1:162760622 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2907 0 0 1 0 1 HSD17B7 chr1:162760625 5'GT 162760625 Upstream 4bp
1307 chr3 126749087 126749087 1 + G T THYM 126749089 + 126749069 126749109 41 CTGCCTGCCCCCCGCAGGGCACACTGCAGAAGTTTGTGGAC CTGCCTGCCCCCCGCAGGTCACACTGCAGAAGTTTGTGGAC < 41bp 0.325661515546901 0.729690771830886 NA NA prediction 0.459381543661771 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126749089 chr3:126749087 nonsynonymous SNV 0.371 3 19 hm6Am_associated_SNPs_2913 0 0 0 0 1 PLXNA1 chr3:126749086 3'AG 126749086 Downstream 2bp
1308 chr5 1036380 1036380 1 + G C OV 1036379 + 1036359 1036399 41 GTGCTCCAAGCAGGAGGCCCAGTACTGACCCCCAGCCCTGC GTGCTCCAAGCAGGAGGCCCACTACTGACCCCCAGCCCTGC < 41bp 0.488465483679784 0.729658868454299 NA NA prediction 0.459317736908597 Functional Gain - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036379 chr5:1036380 nonsynonymous SNV 0.016 0 22 hm6Am_associated_SNPs_2915 0 0 1 0 1 NKD2 chr5:1036372 3'AG 1036372 Downstream 9bp
1309 chr21 45732895 45732895 1 + G A rs142196118 45732897 + 45732877 45732917 41 TACAGCCCGGACCTACTCGCACCTGAACATCGCGGGCCTAG TACAGCCCGGACCTACTCACACCTGAACATCGCGGGCCTAG < 41bp 0.56617054708816 0.795786855408815 NA NA prediction 0.459232616641311 Functional Gain - PFKL ENSG00000141959 CDS Human protein_coding chr21:45732897 chr21:45732895 synonymous SNV . 0 19 hm6Am_associated_SNPs_2916 0 0 1 0 1 PFKL chr21:45732861 3'AG 45732861 Downstream 35bp
1310 chr11 1480494 1480494 1 + G A rs534638646 1480496 + 1480476 1480516 41 ATCCCCCACGCTCACCTGGCACCTCCACCTGCCACTTCACC ATCCCCCACGCTCACCTGACACCTCCACCTGCCACTTCACC < 41bp 0.549974075928167 0.779493973346184 NA NA prediction 0.459039794836035 Functional Gain - BRSK2 ENSG00000174672 intronic Human protein_coding chr11:1480496 chr11:1480494 . . 0 19 hm6Am_associated_SNPs_2918 0 0 0 2 1 BRSK2 chr11:1480422 3'AG 1480422 Downstream 73bp
1311 chr10 90484379 90484379 1 + G A COAD 90484381 + 90484361 90484401 41 GACAAGAAAGGAAACAATGCAAACCCTGAAGCTAATATGAA GACAAGAAAGGAAACAATACAAACCCTGAAGCTAATATGAA < 41bp 0.538779708368546 0.768220420231485 NA NA prediction 0.458881423725877 Functional Gain - LIPK ENSG00000204021 CDS Human protein_coding chr10:90484381 chr10:90484379 nonsynonymous SNV 0.350 0 19 hm6Am_associated_SNPs_2922 0 0 0 0 1 LIPK chr10:90484405 5'GT 90484405 Upstream 27bp
1312 chr7 1273207 1273207 1 + G A COAD 1273209 + 1273189 1273229 41 GCAAGCGGCGGCGCACCCGCACCAACTTCACCGGCTGGCAG GCAAGCGGCGGCGCACCCACACCAACTTCACCGGCTGGCAG < 41bp 0.552757394738846 0.782166726392771 NA NA prediction 0.45881866330785 Functional Gain - UNCX ENSG00000164853 CDS Human protein_coding chr7:1273209 chr7:1273207 nonsynonymous SNV 0.930 4 19 hm6Am_associated_SNPs_2924 0 0 0 0 1 UNCX chr7:1273156 3'AG 1273156 Downstream 52bp
1313 chr3 138183231 138183231 1 + G C BRCA 138183230 + 138183210 138183250 41 GGAGGCAGAGCAGCTGGCCCAGAAGGACAACTTTCTGGGGC GGAGGCAGAGCAGCTGGCCCACAAGGACAACTTTCTGGGGC < 41bp 0.460973508744171 0.729352827677102 NA NA prediction 0.458705655354204 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138183230 chr3:138183231 nonsynonymous SNV 0.966 0 22 hm6Am_associated_SNPs_2925 0 0 0 0 1 ESYT3 chr3:138183187 3'AG 138183187 Downstream 45bp
1314 chr1 36642001 36642001 1 + G A STAD 36642003 + 36641983 36642023 41 GCGGGCCGCAACCCGACCGCACTCATCCCTCTGCAGCCGTG GCGGGCCGCAACCCGACCACACTCATCCCTCTGCAGCCGTG < 41bp 0.548895599260245 0.778161583613721 NA NA prediction 0.458531968706951 Functional Gain - MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36642003 chr1:36642001 nonsynonymous SNV 0.999 1 19 hm6Am_associated_SNPs_2930 0 0 0 0 1 MAP7D1 chr1:36641922 3'AG 36641922 Downstream 80bp
1315 chr2 158140835 158140835 1 + G C LUAD 158140834 + 158140814 158140854 41 ACAATAACCTCCCAACCACCAGTGTCATCATGTGCTTTGTG ACAATAACCTCCCAACCACCACTGTCATCATGTGCTTTGTG < 41bp 0.478112514519761 0.729260676772771 NA NA prediction 0.458521353545542 Functional Gain - GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158140834 chr2:158140835 nonsynonymous SNV 0.997 1 22 hm6Am_associated_SNPs_2931 0 0 1 1 1 GALNT5 chr2:158140794 3'AG 158140794 Downstream 42bp
1316 chr19 11132481 11132481 1 + G A STAD 11132483 + 11132463 11132503 41 GACGCAGGTGCTCAACACGCACTATGTGGCACCCCGCCGCC GACGCAGGTGCTCAACACACACTATGTGGCACCCCGCCGCC < 41bp 0.550174677005858 0.779378425384529 NA NA prediction 0.458407496757342 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11132483 chr19:11132481 synonymous SNV . 0 19 hm6Am_associated_SNPs_2932 1 0 1 0 1 SMARCA4 chr19:11132401 3'AG 11132401 Downstream 81bp
1317 chr9 139994211 139994211 1 + G A rs114057640 139994213 + 139994193 139994233 41 ATGCATGGAAAGGATACCGCAAGTTTGCATGGGGCCATGAC ATGCATGGAAAGGATACCACAAGTTTGCATGGGGCCATGAC < 41bp 0.5626869778183 0.791890590367224 NA NA prediction 0.458407225097849 Functional Gain - MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:139994213 chr9:139994211 nonsynonymous SNV 0.031 1 19 hm6Am_associated_SNPs_2933 2 0 1 0 1 MAN1B1 chr9:139994148 3'AG 139994148 Downstream 64bp
1318 chr12 6923959 6923959 1 + G A STAD 6923961 + 6923941 6923981 41 CACCCACCTGCTTCAGGGGCAGAGCCTGACCCTGACCTTGG CACCCACCTGCTTCAGGGACAGAGCCTGACCCTGACCTTGG < 41bp 0.495470936304732 0.729035036380544 NA NA prediction 0.458070072761087 Functional Gain - CD4 ENSG00000010610 CDS Human protein_coding chr12:6923961 chr12:6923959 synonymous SNV . 0 19 hm6Am_associated_SNPs_2937 0 0 0 0 1 CD4 chr12:6923925 3'AG 6923925 Downstream 35bp
1319 chr5 167719216 167719216 1 + G A SARC 167719218 + 167719198 167719238 41 AGGCGCGCGACTTCGACGGCAAGGTCTACTACATAGACCAC AGGCGCGCGACTTCGACGACAAGGTCTACTACATAGACCAC < 41bp 0.472631248541277 0.728853851890091 NA NA prediction 0.457707703780181 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167719218 chr5:167719216 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_2940 0 0 0 0 1 WWC1 chr5:167719276 5'GT 167719276 Upstream 61bp
1320 chr19 15740101 15740101 1 + G A UCEC 15740103 + 15740083 15740123 41 CCGACCACAGGGAGCCACGCAGGACGCCGGAGATTGTTTTG CCGACCACAGGGAGCCACACAGGACGCCGGAGATTGTTTTG < 41bp 0.555306200452452 0.784157602763561 NA NA prediction 0.457702804622217 Functional Gain - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15740103 chr19:15740101 . 0.501 0 19 hm6Am_associated_SNPs_2941 0 0 0 0 1 CYP4F8 chr19:15740003 3'AG 15740003 Downstream 99bp
1321 chr9 130263396 130263396 1 + G C BRCA 130263395 + 130263375 130263415 41 GAGCTGGAGGTGCAGGCCTCAGAGTGTGTCGTGTGCCTGGA GAGCTGGAGGTGCAGGCCTCACAGTGTGTCGTGTGCCTGGA < 41bp 0.535151063731054 0.763978193562017 NA NA prediction 0.457654259661927 Functional Gain - LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130263395 chr9:130263396 nonsynonymous SNV 0.981 4 22 hm6Am_associated_SNPs_2942 0 0 1 0 1 LRSAM1 chr9:130263422 5'GT 130263422 Upstream 27bp
1322 chrX 22051209 22051209 1 + G A COAD 22051211 + 22051191 22051231 41 TGGTCGTGTTTGTCGGTGGCACCCTAGTTCTGGGCACGATC TGGTCGTGTTTGTCGGTGACACCCTAGTTCTGGGCACGATC < 41bp 0.574652676463414 0.803479001655741 NA NA prediction 0.457652650384654 Functional Gain - PHEX ENSG00000102174 CDS Human protein_coding chrX:22051211 chrX:22051209 nonsynonymous SNV 0.597 1 19 hm6Am_associated_SNPs_2943 0 0 0 0 1 PHEX chrX:22051241 5'GT 22051241 Upstream 33bp
1323 chr9 139312525 139312525 1 + G A CESC 139312527 + 139312507 139312547 41 CCCCATCCCCGAGCTCACGCACATCATGGTTGGACTGGAGA CCCCATCCCCGAGCTCACACACATCATGGTTGGACTGGAGA < 41bp 0.468315507890597 0.728750667467487 NA NA prediction 0.457501334934973 Functional Gain - PMPCA ENSG00000165688 CDS Human protein_coding chr9:139312527 chr9:139312525 synonymous SNV . 0 19 hm6Am_associated_SNPs_2947 0 0 1 0 2 PMPCA chr9:139312469 3'AG 139312469 Downstream 57bp
1324 chr9 139312525 139312525 1 + G A CESC 139312527 + 139312507 139312547 41 CCCCATCCCCGAGCTCACGCACATCATGGTTGGACTGGAGA CCCCATCCCCGAGCTCACACACATCATGGTTGGACTGGAGA < 41bp 0.468315507890597 0.728750667467487 NA NA prediction 0.457501334934973 Functional Gain - PMPCA ENSG00000165688 CDS Human protein_coding chr9:139312527 chr9:139312525 synonymous SNV . 0 19 hm6Am_associated_SNPs_2947 0 0 1 0 2 PMPCA chr9:139312561 5'GT 139312561 Upstream 37bp
1325 chr17 78409958 78409958 1 + G T UCEC 78409960 + 78409940 78409980 41 TTGAACGTGGTGGTGAGAGCACACGTCCTCGTCTCATTCCT TTGAACGTGGTGGTGAGATCACACGTCCTCGTCTCATTCCT < 41bp 0.331288662728707 0.728700552483953 NA NA prediction 0.457401104967906 Functional Gain - ENDOV ENSG00000173818 CDS Human protein_coding chr17:78409960 chr17:78409958 nonsynonymous SNV 0.055 0 19 hm6Am_associated_SNPs_2952 0 0 1 0 1 ENDOV chr17:78409933 3'AG 78409933 Downstream 26bp
1326 chr1 151694069 151694069 1 + G A rs544053641 151694071 + 151694051 151694091 41 CGGGGCGCTTAGCGCAGCGCAGCTGGAGCAGCTGCGAAAAT CGGGGCGCTTAGCGCAGCACAGCTGGAGCAGCTGCGAAAAT < 41bp 0.573329466119013 0.801933598735548 NA NA prediction 0.457208265233071 Functional Gain - RIIAD1 ENSG00000178796 CDS Human protein_coding chr1:151694071 chr1:151694069 synonymous SNV . 0 19 hm6Am_associated_SNPs_2954 0 0 0 0 1 RIIAD1 chr1:151694096 5'GT 151694096 Upstream 28bp
1327 chr3 47453636 47453636 1 + G A READ 47453638 + 47453618 47453658 41 TTCATCCAGGAGGTGCACGCACATTACCTGCATCAGCGGCC TTCATCCAGGAGGTGCACACACATTACCTGCATCAGCGGCC < 41bp 0.478094347911967 0.728602703624808 NA NA prediction 0.457205407249616 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47453638 chr3:47453636 nonsynonymous SNV 0.356 1 19 hm6Am_associated_SNPs_2955 0 0 1 0 2 PTPN23 chr3:47453584 3'AG 47453584 Downstream 53bp
1328 chr3 47453636 47453636 1 + G A READ 47453638 + 47453618 47453658 41 TTCATCCAGGAGGTGCACGCACATTACCTGCATCAGCGGCC TTCATCCAGGAGGTGCACACACATTACCTGCATCAGCGGCC < 41bp 0.478094347911967 0.728602703624808 NA NA prediction 0.457205407249616 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47453638 chr3:47453636 nonsynonymous SNV 0.356 1 19 hm6Am_associated_SNPs_2955 0 0 1 0 2 PTPN23 chr3:47453688 5'GT 47453688 Upstream 53bp
1329 chr12 81102325 81102325 1 + G A STAD 81102327 + 81102307 81102347 41 AGGGTGCGGATTTCCTGCGCACCTGCAGCTCCCAGTGGCCA AGGGTGCGGATTTCCTGCACACCTGCAGCTCCCAGTGGCCA < 41bp 0.467590346413668 0.728488829598303 NA NA prediction 0.456977659196606 Functional Gain - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81102327 chr12:81102325 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2956 0 0 0 0 2 MYF6 chr12:81102303 3'AG 81102303 Downstream 23bp
1330 chr12 81102325 81102325 1 + G A STAD 81102327 + 81102307 81102347 41 AGGGTGCGGATTTCCTGCGCACCTGCAGCTCCCAGTGGCCA AGGGTGCGGATTTCCTGCACACCTGCAGCTCCCAGTGGCCA < 41bp 0.467590346413668 0.728488829598303 NA NA prediction 0.456977659196606 Functional Gain - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81102327 chr12:81102325 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2956 0 0 0 0 2 MYF6 chr12:81102393 5'GT 81102393 Upstream 69bp
1331 chr16 727863 727863 1 + G A GBM 727865 + 727845 727885 41 ACAGCCCAGCTTCATGGCGCACCTGGCAGGCGCGGTGGTGG ACAGCCCAGCTTCATGGCACACCTGGCAGGCGCGGTGGTGG < 41bp 0.543639818506008 0.772081986450241 NA NA prediction 0.456884335888466 Functional Gain - RHBDL1 ENSG00000103269 CDS Human protein_coding chr16:727865 chr16:727863 synonymous SNV . 0 19 hm6Am_associated_SNPs_2957 0 0 1 0 1 RHBDL1 chr16:727781 3'AG 727781 Downstream 83bp
1332 chrX 22051224 22051224 1 + G A UCEC 22051226 + 22051206 22051246 41 GTGGCACCCTAGTTCTGGGCACGATCCTCTTTCTAGGTAAG GTGGCACCCTAGTTCTGGACACGATCCTCTTTCTAGGTAAG < 41bp 0.572719945594118 0.801149638711586 NA NA prediction 0.456859386234936 Functional Gain - PHEX ENSG00000102174 CDS Human protein_coding chrX:22051226 chrX:22051224 nonsynonymous SNV 0.924 2 19 hm6Am_associated_SNPs_2958 0 0 0 0 1 PHEX chrX:22051241 5'GT 22051241 Upstream 18bp
1333 chr19 30936614 30936614 1 + G T COAD 30936616 + 30936596 30936636 41 TGCCCAGGAGGACAGCCCGCACCCCTCCTCGCCATCCTCCT TGCCCAGGAGGACAGCCCTCACCCCTCCTCGCCATCCTCCT < 41bp 0.303471949454622 0.728406191565412 NA NA prediction 0.456812383130823 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30936616 chr19:30936614 synonymous SNV . 0 19 hm6Am_associated_SNPs_2960 0 0 1 0 1 ZNF536 chr19:30936639 5'GT 30936639 Upstream 26bp
1334 chr2 113942965 113942965 1 + G T LUAD 113942967 + 113942947 113942987 41 TCTCAGCCCTGAGGGCTGGCAGAGAGGAGGTCCTTTTTGGC TCTCAGCCCTGAGGGCTGTCAGAGAGGAGGTCCTTTTTGGC < 41bp 0.661799902244754 0.890170418439489 NA NA prediction 0.456741032389469 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113942967 chr2:113942965 nonsynonymous SNV 0.021 1 19 hm6Am_associated_SNPs_2961 0 0 1 0 2 PSD4 chr2:113942942 3'AG 113942942 Downstream 24bp
1335 chr2 113942965 113942965 1 + G T LUAD 113942967 + 113942947 113942987 41 TCTCAGCCCTGAGGGCTGGCAGAGAGGAGGTCCTTTTTGGC TCTCAGCCCTGAGGGCTGTCAGAGAGGAGGTCCTTTTTGGC < 41bp 0.661799902244754 0.890170418439489 NA NA prediction 0.456741032389469 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113942967 chr2:113942965 nonsynonymous SNV 0.021 1 19 hm6Am_associated_SNPs_2961 0 0 1 0 2 PSD4 chr2:113943017 5'GT 113943017 Upstream 53bp
1336 chr2 3691416 3691416 1 + G A UCEC 3691418 + 3691398 3691438 41 CCTGCCAGGGCCGCGGGGGCACGCTGAGCATGCCCAAGGAC CCTGCCAGGGCCGCGGGGACACGCTGAGCATGCCCAAGGAC < 41bp 0.550792041243542 0.77914983012325 NA NA prediction 0.456715577759415 Functional Gain - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3691418 chr2:3691416 nonsynonymous SNV 0.177 4 19 hm6Am_associated_SNPs_2962 0 0 0 0 1 COLEC11 chr2:3691317 3'AG 3691317 Downstream 100bp
1337 chr10 22015206 22015206 1 + G T rs145605101 22015208 + 22015188 22015228 41 GGATCTTCTCTCAGTCAGGCACCATCTCATATGTATGGCAA GGATCTTCTCTCAGTCAGTCACCATCTCATATGTATGGCAA < 41bp 0.337222322408802 0.728307623271251 NA NA prediction 0.456615246542502 Functional Gain - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:22015208 chr10:22015206 nonsynonymous SNV 0.989 1 19 hm6Am_associated_SNPs_2964 0 0 1 1 2 MLLT10 chr10:22015173 3'AG 22015173 Downstream 34bp
1338 chr10 22015206 22015206 1 + G T rs145605101 22015208 + 22015188 22015228 41 GGATCTTCTCTCAGTCAGGCACCATCTCATATGTATGGCAA GGATCTTCTCTCAGTCAGTCACCATCTCATATGTATGGCAA < 41bp 0.337222322408802 0.728307623271251 NA NA prediction 0.456615246542502 Functional Gain - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:22015208 chr10:22015206 nonsynonymous SNV 0.989 1 19 hm6Am_associated_SNPs_2964 0 0 1 1 2 MLLT10 chr10:22015284 5'GT 22015284 Upstream 79bp
1339 chr16 67681650 67681650 1 + G C BLCA 67681649 + 67681629 67681669 41 GAGGAGACTCAGCCTGGCCCAGACAGGGTTGACACCGCGAG GAGGAGACTCAGCCTGGCCCACACAGGGTTGACACCGCGAG < 41bp 0.473919195149921 0.72823756517701 NA NA prediction 0.456475130354021 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67681649 chr16:67681650 nonsynonymous SNV 0.933 1 22 hm6Am_associated_SNPs_2967 0 0 0 0 2 CARMIL2 chr16:67681583 3'AG 67681583 Downstream 68bp
1340 chr16 67681650 67681650 1 + G C BLCA 67681649 + 67681629 67681669 41 GAGGAGACTCAGCCTGGCCCAGACAGGGTTGACACCGCGAG GAGGAGACTCAGCCTGGCCCACACAGGGTTGACACCGCGAG < 41bp 0.473919195149921 0.72823756517701 NA NA prediction 0.456475130354021 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67681649 chr16:67681650 nonsynonymous SNV 0.933 1 22 hm6Am_associated_SNPs_2967 0 0 0 0 2 CARMIL2 chr16:67681669 5'GT 67681669 Upstream 20bp
1341 chr9 33265135 33265135 1 + G A PRAD 33265137 + 33265117 33265157 41 CGCCCAGCCTGACTGACTGCATTGGCACGGTGGGCATTTGA CGCCCAGCCTGACTGACTACATTGGCACGGTGGGCATTTGA < 41bp 0.5674563300708 0.795658889095315 NA NA prediction 0.45640511804903 Functional Gain - CHMP5 ENSG00000086065 CDS Human protein_coding chr9:33265137 chr9:33265135 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2968 0 0 1 0 1 CHMP5 chr9:33265145 5'GT 33265145 Upstream 11bp
1342 chr21 37518650 37518650 1 - C T COAD 37518648 - 37518628 37518668 41 ACTGGTCCTGGGCAGCACGCATTCACCAGAATCCTGTCAGC ACTGGTCCTGGGCAGCACACATTCACCAGAATCCTGTCAGC < 41bp 0.562962712686201 0.791151321332217 NA NA prediction 0.456377217292033 Functional Gain - CBR3 ENSG00000159231 CDS Human protein_coding chr21:37518648 chr21:37518650 nonsynonymous SNV 0.905 3 19 hm6Am_associated_SNPs_2970 0 0 0 0 2 CBR3 chr21:37518554 5'GT 37518554 Upstream 97bp
1343 chr21 37518650 37518650 1 - C T COAD 37518648 - 37518628 37518668 41 ACTGGTCCTGGGCAGCACGCATTCACCAGAATCCTGTCAGC ACTGGTCCTGGGCAGCACACATTCACCAGAATCCTGTCAGC < 41bp 0.562962712686201 0.791151321332217 NA NA prediction 0.456377217292033 Functional Gain - CBR3 ENSG00000159231 CDS Human protein_coding chr21:37518648 chr21:37518650 nonsynonymous SNV 0.905 3 19 hm6Am_associated_SNPs_2970 0 0 0 0 2 CBR3 chr21:37518653 3'AG 37518653 Downstream 4bp
1344 chrX 153770627 153770627 1 + G A UCEC 153770629 + 153770609 153770649 41 AAAGATGCTGTTCCAGGCGCACACTAGTCTACAAGGCCAGA AAAGATGCTGTTCCAGGCACACACTAGTCTACAAGGCCAGA < 41bp 0.562919842548383 0.790962169123584 NA NA prediction 0.456084653150402 Functional Gain - IKBKG ENSG00000073009 CDS Human other chrX:153770629 chrX:153770627 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_2973 0 0 0 0 1 IKBKG chrX:153770667 5'GT 153770667 Upstream 41bp
1345 chr1 11579445 11579445 1 + G T HNSC 11579447 + 11579427 11579467 41 CAGCCGGAAGACCTCCCTGCACTTCCCCGGAGACGTGTTTG CAGCCGGAAGACCTCCCTTCACTTCCCCGGAGACGTGTTTG < 41bp 0.297300181754532 0.72797220882468 NA NA prediction 0.45594441764936 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11579447 chr1:11579445 synonymous SNV . 0 19 hm6Am_associated_SNPs_2975 0 0 0 0 1 DISP3 chr1:11579412 3'AG 11579412 Downstream 34bp
1346 chr15 25453123 25453123 1 + G T LUAD 25453125 + 25453105 25453145 41 AGGTCCCCAGCTCCTGATGCACTGAAGCTCAGGCCCTTCCT AGGTCCCCAGCTCCTGATTCACTGAAGCTCAGGCCCTTCCT < 41bp 0.695956700616623 0.923916609992986 NA NA prediction 0.455919818752727 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25453125 chr15:25453123 . . 0 19 hm6Am_associated_SNPs_2976 0 0 0 3 2 SNHG14 chr15:25453043 3'AG 25453043 Downstream 81bp
1347 chr15 25453123 25453123 1 + G T LUAD 25453125 + 25453105 25453145 41 AGGTCCCCAGCTCCTGATGCACTGAAGCTCAGGCCCTTCCT AGGTCCCCAGCTCCTGATTCACTGAAGCTCAGGCCCTTCCT < 41bp 0.695956700616623 0.923916609992986 NA NA prediction 0.455919818752727 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25453125 chr15:25453123 . . 0 19 hm6Am_associated_SNPs_2976 0 0 0 3 2 SNHG14 chr15:25453174 5'GT 25453174 Upstream 52bp
1348 chr12 102025488 102025488 1 + G C LUSC 102025490 + 102025470 102025510 41 GAAGGAAACCTTTGAGAGGCACAGTCGGGTAAGGCCCTGAA GAAGGAAACCTTTGAGAGCCACAGTCGGGTAAGGCCCTGAA < 41bp 0.391545997034201 0.727950162811136 NA NA prediction 0.455900325622272 Functional Gain - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102025490 chr12:102025488 nonsynonymous SNV 0.985 1 19 hm6Am_associated_SNPs_2977 0 0 0 0 1 MYBPC1 chr12:102025497 5'GT 102025497 Upstream 10bp
1349 chr18 77464902 77464902 1 + G A COAD 77464904 + 77464884 77464924 41 TTCGGCAGCCGGCTGTACGCACACACCATCGCAGGTCAGTC TTCGGCAGCCGGCTGTACACACACACCATCGCAGGTCAGTC < 41bp 0.466569530372794 0.727917458987218 NA NA prediction 0.455834917974437 Functional Gain - CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77464904 chr18:77464902 nonsynonymous SNV 0.698 4 19 hm6Am_associated_SNPs_2979 0 0 0 0 1 CTDP1 chr18:77464917 5'GT 77464917 Upstream 16bp
1350 chr11 60696142 60696142 1 + G A UCEC 60696144 + 60696124 60696164 41 GGAGCTGGAGCTTCCCTCGCACTGGTTCTCACAGGCCTCCA GGAGCTGGAGCTTCCCTCACACTGGTTCTCACAGGCCTCCA < 41bp 0.472318462278865 0.727877522696111 NA NA prediction 0.455755045392222 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60696144 chr11:60696142 synonymous SNV . 0 19 hm6Am_associated_SNPs_2981 0 0 1 0 1 TMEM132A chr11:60696101 3'AG 60696101 Downstream 42bp
1351 chr2 27440801 27440801 1 + G A COAD 27440803 + 27440783 27440823 41 ACCGATCCCTCCTACAAGGCACAGATCTTAGTGCTCACCTA ACCGATCCCTCCTACAAGACACAGATCTTAGTGCTCACCTA < 41bp 0.481041461724431 0.727862906040606 NA NA prediction 0.455725812081212 Functional Gain - CAD ENSG00000084774 CDS Human protein_coding chr2:27440803 chr2:27440801 nonsynonymous SNV 0.994 3 19 hm6Am_associated_SNPs_2984 0 0 1 0 1 CAD chr2:27440884 5'GT 27440884 Upstream 84bp
1352 chr13 113893788 113893788 1 + G T LUAD 113893790 + 113893770 113893810 41 AACAGAGTGCCGGACCTCGCACAGATGTACCAGCTGTTCAG AACAGAGTGCCGGACCTCTCACAGATGTACCAGCTGTTCAG < 41bp 0.304091383700665 0.727830088788217 NA NA prediction 0.455660177576434 Functional Gain - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113893790 chr13:113893788 nonsynonymous SNV 0.136 1 19 hm6Am_associated_SNPs_2986 0 0 1 0 2 CUL4A chr13:113893747 3'AG 113893747 Downstream 42bp
1353 chr13 113893788 113893788 1 + G T LUAD 113893790 + 113893770 113893810 41 AACAGAGTGCCGGACCTCGCACAGATGTACCAGCTGTTCAG AACAGAGTGCCGGACCTCTCACAGATGTACCAGCTGTTCAG < 41bp 0.304091383700665 0.727830088788217 NA NA prediction 0.455660177576434 Functional Gain - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113893790 chr13:113893788 nonsynonymous SNV 0.136 1 19 hm6Am_associated_SNPs_2986 0 0 1 0 2 CUL4A chr13:113893865 5'GT 113893865 Upstream 78bp
1354 chr17 61587893 61587893 1 + G A rs75320474 61587895 + 61587875 61587915 41 AGGCCTGCTCAGCCTCTAGCACCAGGACTCAGGTGATGAGG AGGCCTGCTCAGCCTCTAACACCAGGACTCAGGTGATGAGG < 41bp 0.53596007710864 0.763768872413297 NA NA prediction 0.455617590609313 Functional Gain - ACE;KCNH6 ENSG00000224353 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:61587895 chr17:61587893 . . 0 19 hm6Am_associated_SNPs_2987 0 0 0 0 1 ACE;KCNH6 chr17:61587906 5'GT 61587906 Upstream 14bp
1355 chr4 8605723 8605723 1 + G A PCPG 8605725 + 8605705 8605745 41 GGCCTGGAGGCTGACGAGGCACTGCCCTCAGGGCTGCCGCC GGCCTGGAGGCTGACGAGACACTGCCCTCAGGGCTGCCGCC < 41bp 0.574738978391288 0.802533522332371 NA NA prediction 0.455589087882166 Functional Gain - CPZ ENSG00000109625 CDS Human protein_coding chr4:8605725 chr4:8605723 nonsynonymous SNV 0.025 0 19 hm6Am_associated_SNPs_2989 0 0 1 0 1 CPZ chr4:8605703 3'AG 8605703 Downstream 21bp
1356 chr10 135342029 135342029 1 + G T LUSC 135342031 + 135342011 135342051 41 CACGCTGTACGTGGGCTCGCAGCGCATGGTGGTGATGCACG CACGCTGTACGTGGGCTCTCAGCGCATGGTGGTGATGCACG < 41bp 0.301821194230932 0.727755063240115 NA NA prediction 0.455510126480231 Functional Gain - CYP2E1 ENSG00000130649 CDS Human protein_coding chr10:135342031 chr10:135342029 synonymous SNV . 0 19 hm6Am_associated_SNPs_2990 0 0 1 0 1 CYP2E1 chr10:135341985 3'AG 135341985 Downstream 45bp
1357 chr4 6695734 6695734 1 + G A rs73089273 6695736 + 6695716 6695756 41 GGGCAGCGAGGGCAGCACGCAGACCCTGACCAAGGGGGAGC GGGCAGCGAGGGCAGCACACAGACCCTGACCAAGGGGGAGC < 41bp 0.582972296822807 0.810674183638663 NA NA prediction 0.455403773631712 Functional Gain - S100P ENSG00000163993 CDS Human protein_coding chr4:6695736 chr4:6695734 synonymous SNV . 0 19 hm6Am_associated_SNPs_2992 0 0 1 0 1 S100P chr4:6695797 5'GT 6695797 Upstream 64bp
1358 chr11 118940016 118940016 1 + G T LUAD 118940018 + 118939998 118940038 41 AAGCAGCACAATATTCTGGCATCTGTTGGAGAAGATGAAGA AAGCAGCACAATATTCTGTCATCTGTTGGAGAAGATGAAGA < 41bp 0.666551339914817 0.894227449727408 NA NA prediction 0.455352219625182 Functional Gain - VPS11 ENSG00000160695 CDS Human protein_coding chr11:118940018 chr11:118940016 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_2994 0 0 1 0 1 VPS11 chr11:118940054 5'GT 118940054 Upstream 39bp
1359 chr1 45479655 45479655 1 + G C LUSC 45479654 + 45479634 45479674 41 GGCCAAGCGCTGGCTCTATCAGAGACCTCAGGCTAGTCACC GGCCAAGCGCTGGCTCTATCACAGACCTCAGGCTAGTCACC < 41bp 0.600872852826741 0.828535241709046 NA NA prediction 0.455324777764611 Functional Gain - UROD ENSG00000126088 CDS Human protein_coding chr1:45479654 chr1:45479655 nonsynonymous SNV 0.998 3 22 hm6Am_associated_SNPs_2996 0 0 1 0 2 UROD chr1:45479581 3'AG 45479581 Downstream 75bp
1360 chr1 45479655 45479655 1 + G C LUSC 45479654 + 45479634 45479674 41 GGCCAAGCGCTGGCTCTATCAGAGACCTCAGGCTAGTCACC GGCCAAGCGCTGGCTCTATCACAGACCTCAGGCTAGTCACC < 41bp 0.600872852826741 0.828535241709046 NA NA prediction 0.455324777764611 Functional Gain - UROD ENSG00000126088 CDS Human protein_coding chr1:45479654 chr1:45479655 nonsynonymous SNV 0.998 3 22 hm6Am_associated_SNPs_2996 0 0 1 0 2 UROD chr1:45479742 5'GT 45479742 Upstream 88bp
1361 chr3 52326543 52326543 1 + G T LUSC 52326545 + 52326525 52326565 41 GCCCAGCGGCAGGCCGAGGCACTGGGCTACCAGGCTGTGGT GCCCAGCGGCAGGCCGAGTCACTGGGCTACCAGGCTGTGGT < 41bp 0.703491842784771 0.931100063204703 NA NA prediction 0.455216440839862 Functional Gain - GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52326545 chr3:52326543 nonsynonymous SNV 0.217 0 19 hm6Am_associated_SNPs_2998 0 0 1 2 1 GLYCTK chr3:52326585 5'GT 52326585 Upstream 43bp
1362 chr12 54911597 54911597 1 + G T COAD 54911599 + 54911579 54911619 41 AAACTTTATAGGAGCATTGCAGAGCTACTTTTCTTGTTGGA AAACTTTATAGGAGCATTTCAGAGCTACTTTTCTTGTTGGA < 41bp 0.414953223441025 0.727556415091841 NA NA prediction 0.455112830183681 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54911599 chr12:54911597 nonsynonymous SNV 0.976 3 19 hm6Am_associated_SNPs_3002 0 0 1 0 1 NCKAP1L chr12:54911590 3'AG 54911590 Downstream 8bp
1363 chr17 77075619 77075619 1 + G T LGG 77075621 + 77075601 77075641 41 CTATGCTTTCTACCACTGGCAGTGCATCGACGTCTTTGTGT CTATGCTTTCTACCACTGTCAGTGCATCGACGTCTTTGTGT < 41bp 0.306117076971025 0.727525956215487 NA NA prediction 0.455051912430975 Functional Gain - ENGASE ENSG00000167280 CDS Human protein_coding chr17:77075621 chr17:77075619 nonsynonymous SNV 0.988 3 19 hm6Am_associated_SNPs_3003 0 0 0 0 1 ENGASE chr17:77075571 3'AG 77075571 Downstream 49bp
1364 chr6 31497540 31497540 1 + G A UCEC 31497542 + 31497522 31497562 41 AGGGCCCTGGGACCCACCGCACAGCTGAGCTGGCCCGAGCT AGGGCCCTGGGACCCACCACACAGCTGAGCTGGCCCGAGCT < 41bp 0.47310163724215 0.727472547868326 NA NA prediction 0.454945095736653 Functional Gain - MCCD1 ENSG00000204511 CDS Human protein_coding chr6:31497542 chr6:31497540 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_3005 0 0 0 0 1 MCCD1 chr6:31497524 3'AG 31497524 Downstream 17bp
1365 chr19 39936550 39936550 1 + G A UCEC 39936552 + 39936532 39936572 41 TGTCGGACAGCGAGGACAGCAACTTTTCCGAGGAGGAGGAC TGTCGGACAGCGAGGACAACAACTTTTCCGAGGAGGAGGAC < 41bp 0.567095309283472 0.794527438405622 NA NA prediction 0.4548642582443 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39936552 chr19:39936550 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3009 0 0 1 0 3 SUPT5H chr19:39936519 3'AG 39936519 Downstream 32bp
1366 chr19 39936550 39936550 1 + G A UCEC 39936552 + 39936532 39936572 41 TGTCGGACAGCGAGGACAGCAACTTTTCCGAGGAGGAGGAC TGTCGGACAGCGAGGACAACAACTTTTCCGAGGAGGAGGAC < 41bp 0.567095309283472 0.794527438405622 NA NA prediction 0.4548642582443 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39936552 chr19:39936550 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3009 0 0 1 0 3 SUPT5H chr19:39936522 3'AG 39936522 Downstream 29bp
1367 chr19 39936550 39936550 1 + G A UCEC 39936552 + 39936532 39936572 41 TGTCGGACAGCGAGGACAGCAACTTTTCCGAGGAGGAGGAC TGTCGGACAGCGAGGACAACAACTTTTCCGAGGAGGAGGAC < 41bp 0.567095309283472 0.794527438405622 NA NA prediction 0.4548642582443 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39936552 chr19:39936550 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3009 0 0 1 0 3 SUPT5H chr19:39936605 5'GT 39936605 Upstream 56bp
1368 chr6 43484912 43484912 1 + G A CESC 43484914 + 43484894 43484934 41 TGGGGGAGTTTGGGGTTCGCAATGTAAGCCTTGTGGCCTTG TGGGGGAGTTTGGGGTTCACAATGTAAGCCTTGTGGCCTTG < 41bp 0.57439737650356 0.801750754998267 NA NA prediction 0.454706756989414 Functional Gain - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43484914 chr6:43484912 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_3014 0 0 1 0 1 POLR1C chr6:43484916 5'GT 43484916 Upstream 5bp
1369 chr1 109774299 109774299 1 + G A UCEC 109774301 + 109774281 109774321 41 TCATCCAGTATGCCCTTCGCACCTTGGGAAGTCGGGGCTAC TCATCCAGTATGCCCTTCACACCTTGGGAAGTCGGGGCTAC < 41bp 0.492600166983485 0.727230010809883 NA NA prediction 0.454460021619766 Functional Gain - SARS ENSG00000031698 CDS Human protein_coding chr1:109774301 chr1:109774299 nonsynonymous SNV 0.999 1 19 hm6Am_associated_SNPs_3018 0 0 1 0 1 SARS chr1:109774253 3'AG 109774253 Downstream 47bp
1370 chr17 56271165 56271165 1 + G A GBM 56271167 + 56271147 56271187 41 GCTGCAGCGACAAGTACCGCACCATCACTGGACGGTGCAAC GCTGCAGCGACAAGTACCACACCATCACTGGACGGTGCAAC < 41bp 0.461171521302201 0.727227263185915 NA NA prediction 0.454454526371831 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56271167 chr17:56271165 nonsynonymous SNV 0.905 4 19 hm6Am_associated_SNPs_3019 0 0 0 0 2 EPX chr17:56271075 3'AG 56271075 Downstream 91bp
1371 chr17 56271165 56271165 1 + G A GBM 56271167 + 56271147 56271187 41 GCTGCAGCGACAAGTACCGCACCATCACTGGACGGTGCAAC GCTGCAGCGACAAGTACCACACCATCACTGGACGGTGCAAC < 41bp 0.461171521302201 0.727227263185915 NA NA prediction 0.454454526371831 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56271167 chr17:56271165 nonsynonymous SNV 0.905 4 19 hm6Am_associated_SNPs_3019 0 0 0 0 2 EPX chr17:56271192 5'GT 56271192 Upstream 28bp
1372 chr20 56964554 56964554 1 + G A UCEC 56964556 + 56964536 56964576 41 CCTGAGCCTCGAGCCGCAGCACGAGCTCAAATTCCGAGGTA CCTGAGCCTCGAGCCGCAACACGAGCTCAAATTCCGAGGTA < 41bp 0.579956072988784 0.807074211087198 NA NA prediction 0.454236276196827 Functional Gain - VAPB ENSG00000124164 CDS Human protein_coding chr20:56964556 chr20:56964554 synonymous SNV . 0 19 hm6Am_associated_SNPs_3022 0 0 1 0 1 VAPB chr20:56964573 5'GT 56964573 Upstream 20bp
1373 chr10 135342131 135342131 1 + G A ESCA 135342133 + 135342113 135342153 41 CCTCCCCGCGTTCCATGCGCACAGGGACAGGGGTGAGTCCG CCTCCCCGCGTTCCATGCACACAGGGACAGGGGTGAGTCCG < 41bp 0.465979956153889 0.727045576750583 NA NA prediction 0.454091153501167 Functional Gain - CYP2E1 ENSG00000130649 CDS Human protein_coding chr10:135342133 chr10:135342131 synonymous SNV . 0 19 hm6Am_associated_SNPs_3026 0 0 0 0 1 CYP2E1 chr10:135342144 5'GT 135342144 Upstream 14bp
1374 chr15 25417713 25417713 1 + G T LUSC 25417715 + 25417695 25417735 41 CTGGCACTCTGGTCTCCTGCACTGAGCTGTGGTGAGCACAT CTGGCACTCTGGTCTCCTTCACTGAGCTGTGGTGAGCACAT < 41bp 0.69756396684188 0.924540304398548 NA NA prediction 0.453952675113334 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25417715 chr15:25417713 . . 0 19 hm6Am_associated_SNPs_3029 0 0 0 4 1 SNHG14 chr15:25417725 5'GT 25417725 Upstream 13bp
1375 chr8 145140293 145140293 1 + G T LUAD 145140295 + 145140275 145140315 41 CCAACACGTTGCCACCCAGCACTTCCCAGTGGCAGAGGCTG CCAACACGTTGCCACCCATCACTTCCCAGTGGCAGAGGCTG < 41bp 0.307216549775744 0.726891555078745 NA NA prediction 0.45378311015749 Functional Gain - GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145140295 chr8:145140293 nonsynonymous SNV 0.851 1 19 hm6Am_associated_SNPs_3034 0 0 1 0 1 GPAA1 chr8:145140382 5'GT 145140382 Upstream 90bp
1376 chr2 220494096 220494096 1 + G T LUSC 220494098 + 220494078 220494118 41 GAGGAAGGAGAATCTGAGGCAGAACCTGTGGAGCCCCCCCA GAGGAAGGAGAATCTGAGTCAGAACCTGTGGAGCCCCCCCA < 41bp 0.306156247290076 0.726789366089876 NA NA prediction 0.453578732179752 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220494098 chr2:220494096 nonsynonymous SNV 0.999 0 19 hm6Am_associated_SNPs_3040 0 0 0 0 1 SLC4A3 chr2:220494143 5'GT 220494143 Upstream 48bp
1377 chr4 944293 944293 1 + G C LGG 944295 + 944275 944315 41 ATCGTGACAGTGGCCTGGGCAGCACACACAAGGTGGGGGCC ATCGTGACAGTGGCCTGGCCAGCACACACAAGGTGGGGGCC < 41bp 0.556429859455837 0.783059558279203 NA NA prediction 0.453259397646733 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:944295 chr4:944293 nonsynonymous SNV 0.950 3 19 hm6Am_associated_SNPs_3044 0 0 1 0 2 TMEM175 chr4:944209 3'AG 944209 Downstream 85bp
1378 chr4 944293 944293 1 + G C LGG 944295 + 944275 944315 41 ATCGTGACAGTGGCCTGGGCAGCACACACAAGGTGGGGGCC ATCGTGACAGTGGCCTGGCCAGCACACACAAGGTGGGGGCC < 41bp 0.556429859455837 0.783059558279203 NA NA prediction 0.453259397646733 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:944295 chr4:944293 nonsynonymous SNV 0.950 3 19 hm6Am_associated_SNPs_3044 0 0 1 0 2 TMEM175 chr4:944306 5'GT 944306 Upstream 14bp
1379 chr15 28901021 28901021 1 + G A rs188765368 28901023 + 28901003 28901043 41 TCCTGGCTGTGGTTGGAGGCATCGATGGTCGCCTGCGCCTG TCCTGGCTGTGGTTGGAGACATCGATGGTCGCCTGCGCCTG < 41bp 0.586346546346664 0.812918569391027 NA NA prediction 0.453144046088727 Functional Gain - HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28901023 chr15:28901021 . . 0 19 hm6Am_associated_SNPs_3048 0 0 0 0 1 HERC2P9 chr15:28900942 3'AG 28900942 Downstream 80bp
1380 chr17 20156820 20156820 1 + G T UCEC 20156822 + 20156802 20156842 41 CCCCTGGTTTTTACAGAGGCATTCGACTTACAGCAGTGTGC CCCCTGGTTTTTACAGAGTCATTCGACTTACAGCAGTGTGC < 41bp 0.314511613128672 0.726513806658413 NA NA prediction 0.453027613316826 Functional Gain - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20156822 chr17:20156820 nonsynonymous SNV 0.702 4 19 hm6Am_associated_SNPs_3051 0 0 1 0 2 SPECC1 chr17:20156818 3'AG 20156818 Downstream 3bp
1381 chr17 20156820 20156820 1 + G T UCEC 20156822 + 20156802 20156842 41 CCCCTGGTTTTTACAGAGGCATTCGACTTACAGCAGTGTGC CCCCTGGTTTTTACAGAGTCATTCGACTTACAGCAGTGTGC < 41bp 0.314511613128672 0.726513806658413 NA NA prediction 0.453027613316826 Functional Gain - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20156822 chr17:20156820 nonsynonymous SNV 0.702 4 19 hm6Am_associated_SNPs_3051 0 0 1 0 2 SPECC1 chr17:20156899 5'GT 20156899 Upstream 80bp
1382 chr15 73852191 73852191 1 + G C LUSC 73852190 + 73852170 73852210 41 ACGTTTGTGCCTTATGGATCAGAATTTCCCAGCATTTGTGG ACGTTTGTGCCTTATGGATCACAATTTCCCAGCATTTGTGG < 41bp 0.569190214539572 0.795597154470624 NA NA prediction 0.452813879862105 Functional Gain - REC114 ENSG00000183324 CDS Human protein_coding chr15:73852190 chr15:73852191 nonsynonymous SNV 0.997 2 22 hm6Am_associated_SNPs_3057 0 0 0 0 1 REC114 chr15:73852093 3'AG 73852093 Downstream 99bp
1383 chr18 39593517 39593517 1 + G C LUSC 39593516 + 39593496 39593536 41 GATAGTCAGAGTTCAGTGTCAGAAAATGTGTCAAATTCTGG GATAGTCAGAGTTCAGTGTCACAAAATGTGTCAAATTCTGG < 41bp 0.53828294530713 0.764682155144088 NA NA prediction 0.452798419673918 Functional Gain - PIK3C3 ENSG00000078142 CDS Human protein_coding chr18:39593516 chr18:39593517 nonsynonymous SNV 0.996 0 22 hm6Am_associated_SNPs_3058 0 0 1 0 1 PIK3C3 chr18:39593560 5'GT 39593560 Upstream 44bp
1384 chr19 46706882 46706882 1 + G A rs142071228 46706884 + 46706864 46706904 41 AGCACTCCAGCCACCCAGGCAGATATCAGAGGATGGGCCCT AGCACTCCAGCCACCCAGACAGATATCAGAGGATGGGCCCT < 41bp 0.553480229842723 0.77986934096367 NA NA prediction 0.452778222241894 Functional Gain - IGFL2-AS1 ENSG00000268460 ncRNA_exonic Human processed_transcript chr19:46706884 chr19:46706882 . . 0 19 hm6Am_associated_SNPs_3059 0 0 0 0 1 IGFL2-AS1 chr19:46706913 5'GT 46706913 Upstream 32bp
1385 chr6 4735026 4735026 1 + G A UCEC 4735028 + 4735008 4735048 41 ATGGGCCTTCAGACCCCAGCATCTCCGTGAGCAGTGAGCAA ATGGGCCTTCAGACCCCAACATCTCCGTGAGCAGTGAGCAA < 41bp 0.471219968305086 0.726330730649851 NA NA prediction 0.452661461299702 Functional Gain - KU-MEL-3;CDYL ENSG00000153046 CDS Human protein_coding chr6:4735028 chr6:4735026 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_3061 0 0 0 0 1 KU-MEL-3;CDYL chr6:4735078 5'GT 4735078 Upstream 53bp
1386 chr2 27887374 27887374 1 + G A COAD 27887376 + 27887356 27887396 41 AAACTCGCATCCCACCTCGCACCTACTGTCGAGTCCACGTT AAACTCGCATCCCACCTCACACCTACTGTCGAGTCCACGTT < 41bp 0.47051787013992 0.72625731946924 NA NA prediction 0.45251463893848 Functional Gain - SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27887376 chr2:27887374 nonsynonymous SNV 0.991 1 19 hm6Am_associated_SNPs_3063 0 0 0 0 1 SLC4A1AP chr2:27887444 5'GT 27887444 Upstream 71bp
1387 chr19 45912924 45912924 1 - C G rs2229918 45912925 - 45912905 45912945 41 GAAAGTACCCTGATGACCCCAGCTGCCAAGGAAACCCCCAG GAAAGTACCCTGATGACCCCACCTGCCAAGGAAACCCCCAG < 41bp 0.523276817110878 0.749505892141867 NA NA prediction 0.452458150061978 Functional Gain - CD3EAP;ERCC1 ENSG00000012061;ENSG00000117877 UTR3 Human protein_coding chr19:45912925 chr19:45912924 . . 0 22 hm6Am_associated_SNPs_3066 0 0 1 0 1 ERCC1 chr19:45912983 3'AG 45912983 Downstream 60bp
1388 chr1 179782985 179782985 1 + G C LUSC 179782987 + 179782967 179783007 41 GGAGCACGACCTTCCCACGCATCCCAGAGGCCCCACCTGCA GGAGCACGACCTTCCCACCCATCCCAGAGGCCCCACCTGCA < 41bp 0.367436249530676 0.726183909938877 NA NA prediction 0.452367819877754 Functional Gain - FAM163A ENSG00000143340 CDS Human protein_coding chr1:179782987 chr1:179782985 synonymous SNV . 0 19 hm6Am_associated_SNPs_3068 0 0 0 0 1 FAM163A chr1:179782914 3'AG 179782914 Downstream 72bp
1389 chr19 18677976 18677976 1 + G C BLCA 18677975 + 18677955 18677995 41 AAACTGGCCAGGCAGCACCCAGAGGCCTTCAGCCGTAAGTG AAACTGGCCAGGCAGCACCCACAGGCCTTCAGCCGTAAGTG < 41bp 0.562303297767876 0.788483862961717 NA NA prediction 0.452361130387682 Functional Gain - KXD1 ENSG00000105700 CDS Human protein_coding chr19:18677975 chr19:18677976 nonsynonymous SNV 0.985 1 22 hm6Am_associated_SNPs_3069 0 0 1 1 2 KXD1 chr19:18677942 3'AG 18677942 Downstream 35bp
1390 chr19 18677976 18677976 1 + G C BLCA 18677975 + 18677955 18677995 41 AAACTGGCCAGGCAGCACCCAGAGGCCTTCAGCCGTAAGTG AAACTGGCCAGGCAGCACCCACAGGCCTTCAGCCGTAAGTG < 41bp 0.562303297767876 0.788483862961717 NA NA prediction 0.452361130387682 Functional Gain - KXD1 ENSG00000105700 CDS Human protein_coding chr19:18677975 chr19:18677976 nonsynonymous SNV 0.985 1 22 hm6Am_associated_SNPs_3069 0 0 1 1 2 KXD1 chr19:18677988 5'GT 18677988 Upstream 13bp
1391 chr6 158834158 158834158 1 + G A CESC 158834160 + 158834140 158834180 41 CGTGCGATGCGGACGGAGGCATATTCGTGTGGATTCAGTAC CGTGCGATGCGGACGGAGACATATTCGTGTGGATTCAGTAC < 41bp 0.468121078784534 0.726092568160444 NA NA prediction 0.452185136320888 Functional Gain - TULP4 ENSG00000130338 CDS Human protein_coding chr6:158834160 chr6:158834158 nonsynonymous SNV 0.778 3 19 hm6Am_associated_SNPs_3072 0 0 1 0 2 TULP4 chr6:158834097 3'AG 158834097 Downstream 62bp
1392 chr6 158834158 158834158 1 + G A CESC 158834160 + 158834140 158834180 41 CGTGCGATGCGGACGGAGGCATATTCGTGTGGATTCAGTAC CGTGCGATGCGGACGGAGACATATTCGTGTGGATTCAGTAC < 41bp 0.468121078784534 0.726092568160444 NA NA prediction 0.452185136320888 Functional Gain - TULP4 ENSG00000130338 CDS Human protein_coding chr6:158834160 chr6:158834158 nonsynonymous SNV 0.778 3 19 hm6Am_associated_SNPs_3072 0 0 1 0 2 TULP4 chr6:158834225 5'GT 158834225 Upstream 68bp
1393 chr15 68937513 68937513 1 + G A UCEC 68937515 + 68937495 68937535 41 ACAGATGTCCTGGCGTCCGCAATACCGTAGCTCCAAGTTCC ACAGATGTCCTGGCGTCCACAATACCGTAGCTCCAAGTTCC < 41bp 0.465075427156164 0.725910158298609 NA NA prediction 0.451820316597217 Functional Gain - CORO2B ENSG00000103647 CDS Human protein_coding chr15:68937515 chr15:68937513 synonymous SNV . 0 19 hm6Am_associated_SNPs_3078 0 0 0 0 1 CORO2B chr15:68937499 3'AG 68937499 Downstream 15bp
1394 chr4 20255528 20255528 1 + G A COAD 20255530 + 20255510 20255550 41 ACCGCAGGCGTGCCCGGCGCAGTGCTCTTGCTCGGGCAGCA ACCGCAGGCGTGCCCGGCACAGTGCTCTTGCTCGGGCAGCA < 41bp 0.555865946092412 0.781768341409023 NA NA prediction 0.451804790633223 Functional Gain - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20255530 chr4:20255528 synonymous SNV . 0 19 hm6Am_associated_SNPs_3079 0 0 1 0 1 SLIT2 chr4:20255617 5'GT 20255617 Upstream 90bp
1395 chr16 1584484 1584484 1 + G A UCEC 1584486 + 1584466 1584506 41 AGAGCCGGCCAGGTGGACGCACATGACTGTGAGGCGCTGGG AGAGCCGGCCAGGTGGACACACATGACTGTGAGGCGCTGGG < 41bp 0.581124786024406 0.806956059222288 NA NA prediction 0.451662546395764 Functional Gain - TMEM204 ENSG00000131634 CDS Human protein_coding chr16:1584486 chr16:1584484 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_3082 0 0 0 0 1 TMEM204 chr16:1584556 5'GT 1584556 Upstream 73bp
1396 chr13 114507939 114507939 1 + G A GBM 114507941 + 114507921 114507961 41 CAGCAGATCCTGGCCTACGCAGGCTTCCGCCTGACGCCCGA CAGCAGATCCTGGCCTACACAGGCTTCCGCCTGACGCCCGA < 41bp 0.576850738644549 0.802652759332384 NA NA prediction 0.451604041375669 Functional Gain - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114507941 chr13:114507939 nonsynonymous SNV 0.002 0 19 hm6Am_associated_SNPs_3084 0 0 0 0 2 TMEM255B chr13:114507858 3'AG 114507858 Downstream 82bp
1397 chr13 114507939 114507939 1 + G A GBM 114507941 + 114507921 114507961 41 CAGCAGATCCTGGCCTACGCAGGCTTCCGCCTGACGCCCGA CAGCAGATCCTGGCCTACACAGGCTTCCGCCTGACGCCCGA < 41bp 0.576850738644549 0.802652759332384 NA NA prediction 0.451604041375669 Functional Gain - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114507941 chr13:114507939 nonsynonymous SNV 0.002 0 19 hm6Am_associated_SNPs_3084 0 0 0 0 2 TMEM255B chr13:114508001 5'GT 114508001 Upstream 63bp
1398 chr1 210001465 210001465 1 + G A rs149634752 210001467 + 210001447 210001487 41 CAACACCCTAACTAAAAAGCAGAAGAAACATCTTCGAGATT CAACACCCTAACTAAAAAACAGAAGAAACATCTTCGAGATT < 41bp 0.573089023699833 0.798881275520246 NA NA prediction 0.451584503640827 Functional Gain - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210001467 chr1:210001465 synonymous SNV . 0 19 hm6Am_associated_SNPs_3085 0 0 1 0 1 DIEXF chr1:210001515 5'GT 210001515 Upstream 51bp
1399 chr5 176081954 176081954 1 + G A UCEC 176081956 + 176081936 176081976 41 TCAATATCTACTTCAACTGCACTGACTTGAACCCCAGCCGG TCAATATCTACTTCAACTACACTGACTTGAACCCCAGCCGG < 41bp 0.574112548813726 0.799899257172119 NA NA prediction 0.451573416716785 Functional Gain - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176081956 chr5:176081954 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3086 0 0 1 0 2 TSPAN17 chr5:176081896 3'AG 176081896 Downstream 59bp
1400 chr5 176081954 176081954 1 + G A UCEC 176081956 + 176081936 176081976 41 TCAATATCTACTTCAACTGCACTGACTTGAACCCCAGCCGG TCAATATCTACTTCAACTACACTGACTTGAACCCCAGCCGG < 41bp 0.574112548813726 0.799899257172119 NA NA prediction 0.451573416716785 Functional Gain - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176081956 chr5:176081954 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3086 0 0 1 0 2 TSPAN17 chr5:176082021 5'GT 176082021 Upstream 68bp
1401 chr19 58131623 58131623 1 + G A rs10413455 58131625 + 58131605 58131645 41 TCCAAGGCAGGTTTGCCCGCACAGACGGCTCTCCCTTGTGA TCCAAGGCAGGTTTGCCCACACAGACGGCTCTCCCTTGTGA < 41bp 0.569519383100952 0.795304799827281 NA NA prediction 0.451570833452658 Functional Gain - ZNF134 ENSG00000213762 CDS Human protein_coding chr19:58131625 chr19:58131623 nonsynonymous SNV 0.006 0 19 hm6Am_associated_SNPs_3087 0 0 1 0 1 ZNF134 chr19:58131528 3'AG 58131528 Downstream 96bp
1402 chr6 2884997 2884997 1 + G A rs115145495 2884999 + 2884979 2885019 41 GGCATTGGCTATTAACAAGCACAATCATAGCACACTACAGC GGCATTGGCTATTAACAAACACAATCATAGCACACTACAGC < 41bp 0.539701732919277 0.765445499824847 NA NA prediction 0.45148753381114 Functional Gain - LOC101927730 ENSG00000230438;ENSG00000170542 intergenic Human other chr6:2884999 chr6:2884997 . . 0 19 hm6Am_associated_SNPs_3088 0 0 0 0 2 LOC101927730 chr6:2884945 3'AG 2884945 Downstream 53bp
1403 chr6 2884997 2884997 1 + G A rs115145495 2884999 + 2884979 2885019 41 GGCATTGGCTATTAACAAGCACAATCATAGCACACTACAGC GGCATTGGCTATTAACAAACACAATCATAGCACACTACAGC < 41bp 0.539701732919277 0.765445499824847 NA NA prediction 0.45148753381114 Functional Gain - LOC101927730 ENSG00000230438;ENSG00000170542 intergenic Human other chr6:2884999 chr6:2884997 . . 0 19 hm6Am_associated_SNPs_3088 0 0 0 0 2 LOC101927730 chr6:2885074 5'GT 2885074 Upstream 78bp
1404 chr15 91453835 91453835 1 + G A UCEC 91453837 + 91453817 91453857 41 TCCTGACGGAAGCTCGGCGCACATTGGGGCTCTTCCAGCAT TCCTGACGGAAGCTCGGCACACATTGGGGCTCTTCCAGCAT < 41bp 0.585884943486206 0.811558771425891 NA NA prediction 0.451347655879369 Functional Gain - MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91453837 chr15:91453835 nonsynonymous SNV 0.955 5 19 hm6Am_associated_SNPs_3090 0 0 1 0 1 MAN2A2 chr15:91453913 5'GT 91453913 Upstream 79bp
1405 chr10 104590500 104590500 1 + G A COAD 104590502 + 104590482 104590522 41 CTTCCCTCCAGGCCTGGCGCACCTTGATCTTCACTTTGAAA CTTCCCTCCAGGCCTGGCACACCTTGATCTTCACTTTGAAA < 41bp 0.463486394147778 0.725618931456911 NA NA prediction 0.451237862913821 Functional Gain - CYP17A1 ENSG00000148795 CDS Human protein_coding chr10:104590502 chr10:104590500 nonsynonymous SNV 0.998 5 19 hm6Am_associated_SNPs_3093 0 0 0 2 1 CYP17A1 chr10:104590493 3'AG 104590493 Downstream 8bp
1406 chr3 127783771 127783771 1 + G A UCEC 127783773 + 127783753 127783793 41 TCCATCTGCTGGCCACACGCACAGACAAGGTCCGAGCCCTT TCCATCTGCTGGCCACACACACAGACAAGGTCCGAGCCCTT < 41bp 0.462916353996447 0.725568553732874 NA NA prediction 0.451137107465748 Functional Gain - SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127783773 chr3:127783771 nonsynonymous SNV 0.962 4 19 hm6Am_associated_SNPs_3094 0 0 1 0 2 SEC61A1 chr3:127783720 3'AG 127783720 Downstream 52bp
1407 chr3 127783771 127783771 1 + G A UCEC 127783773 + 127783753 127783793 41 TCCATCTGCTGGCCACACGCACAGACAAGGTCCGAGCCCTT TCCATCTGCTGGCCACACACACAGACAAGGTCCGAGCCCTT < 41bp 0.462916353996447 0.725568553732874 NA NA prediction 0.451137107465748 Functional Gain - SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127783773 chr3:127783771 nonsynonymous SNV 0.962 4 19 hm6Am_associated_SNPs_3094 0 0 1 0 2 SEC61A1 chr3:127783781 5'GT 127783781 Upstream 11bp
1408 chr15 63335135 63335135 1 + G A STAD 63335137 + 63335117 63335157 41 AGGCGGCGGAAGACAGGAGCAAGCAGGTCTGCGCCTCCCCG AGGCGGCGGAAGACAGGAACAAGCAGGTCTGCGCCTCCCCG < 41bp 0.555927098008853 0.781391154366718 NA NA prediction 0.45092811271573 Functional Gain - TPM1 ENSG00000140416 CDS Human protein_coding chr15:63335137 chr15:63335135 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_3098 0 0 1 0 1 TPM1 chr15:63335142 5'GT 63335142 Upstream 8bp
1409 chr2 98351716 98351716 1 + G T PRAD 98351718 + 98351698 98351738 41 GGCCGGGTCGGGCAGGAAGCAGATCGACGTGGCCATCAAGG GGCCGGGTCGGGCAGGAATCAGATCGACGTGGCCATCAAGG < 41bp 0.301661865844987 0.725406530821387 NA NA prediction 0.450813061642774 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98351718 chr2:98351716 nonsynonymous SNV 0.998 2 19 hm6Am_associated_SNPs_3102 0 0 0 0 1 ZAP70 chr2:98351713 3'AG 98351713 Downstream 4bp
1410 chr10 70748989 70748989 1 + G T THYM 70748991 + 70748971 70749011 41 ACCGGCTCTCGCACGACTGCATCTCTCTCTGCATCCAGGCG ACCGGCTCTCGCACGACTTCATCTCTCTCTGCATCCAGGCG < 41bp 0.711248845566514 0.936498898852543 NA NA prediction 0.450500106572057 Functional Gain - KIF1BP ENSG00000198954 CDS Human protein_coding chr10:70748991 chr10:70748989 nonsynonymous SNV 0.956 1 19 hm6Am_associated_SNPs_3107 0 0 1 0 1 KIF1BP chr10:70749014 5'GT 70749014 Upstream 26bp
1411 chr4 71226503 71226503 1 + G A rs528718331 71226505 + 71226485 71226525 41 TTTTCTGTCTTTCAACTGGCAAGAGTCATTTTGACCAGCAG TTTTCTGTCTTTCAACTGACAAGAGTCATTTTGACCAGCAG < 41bp 0.488624197412477 0.725244160762738 NA NA prediction 0.450488321525477 Functional Gain - SMR3A ENSG00000109208 UTR5 Human protein_coding chr4:71226505 chr4:71226503 . . 0 19 hm6Am_associated_SNPs_3109 0 0 0 0 1 SMR3A chr4:71226559 5'GT 71226559 Upstream 57bp
1412 chr19 47876049 47876049 1 + G A STAD 47876051 + 47876031 47876071 41 GTGCTCACCATCGCAGCCGCACTTAGCGTCCAGTCGCCCTT GTGCTCACCATCGCAGCCACACTTAGCGTCCAGTCGCCCTT < 41bp 0.467739964386825 0.725224950916308 NA NA prediction 0.450449901832615 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47876051 chr19:47876049 nonsynonymous SNV 0.146 3 19 hm6Am_associated_SNPs_3110 0 0 1 0 1 DHX34 chr19:47875987 3'AG 47875987 Downstream 63bp
1413 chr1 109704581 109704581 1 + G A CESC 109704583 + 109704563 109704603 41 GTGGAGGGTCGCCGTGCCGCATACCCCGGGCCTGTGCACCA GTGGAGGGTCGCCGTGCCACATACCCCGGGCCTGTGCACCA < 41bp 0.535830520619862 0.760900568366989 NA NA prediction 0.450140095494254 Functional Gain - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109704583 chr1:109704581 synonymous SNV . 0 19 hm6Am_associated_SNPs_3112 0 0 0 0 2 KIAA1324 chr1:109704516 3'AG 109704516 Downstream 66bp
1414 chr1 109704581 109704581 1 + G A CESC 109704583 + 109704563 109704603 41 GTGGAGGGTCGCCGTGCCGCATACCCCGGGCCTGTGCACCA GTGGAGGGTCGCCGTGCCACATACCCCGGGCCTGTGCACCA < 41bp 0.535830520619862 0.760900568366989 NA NA prediction 0.450140095494254 Functional Gain - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109704583 chr1:109704581 synonymous SNV . 0 19 hm6Am_associated_SNPs_3112 0 0 0 0 2 KIAA1324 chr1:109704636 5'GT 109704636 Upstream 56bp
1415 chr12 9459878 9459878 1 + G A rs147430667 9459880 + 9459860 9459900 41 GTGGTGAAGGAATGCCGGGCAGTGGTCATTGCGGGGGGGAC GTGGTGAAGGAATGCCGGACAGTGGTCATTGCGGGGGGGAC < 41bp 0.464963922739671 0.724980447253299 NA NA prediction 0.449960894506598 Functional Gain - LOC642846 ENSG00000111788 ncRNA_exonic Human unprocessed_pseudogene chr12:9459880 chr12:9459878 . . 0 19 hm6Am_associated_SNPs_3114 0 0 1 1 2 LOC642846 chr12:9459798 3'AG 9459798 Downstream 81bp
1416 chr12 9459878 9459878 1 + G A rs147430667 9459880 + 9459860 9459900 41 GTGGTGAAGGAATGCCGGGCAGTGGTCATTGCGGGGGGGAC GTGGTGAAGGAATGCCGGACAGTGGTCATTGCGGGGGGGAC < 41bp 0.464963922739671 0.724980447253299 NA NA prediction 0.449960894506598 Functional Gain - LOC642846 ENSG00000111788 ncRNA_exonic Human unprocessed_pseudogene chr12:9459880 chr12:9459878 . . 0 19 hm6Am_associated_SNPs_3114 0 0 1 1 2 LOC642846 chr12:9459910 5'GT 9459910 Upstream 33bp
1417 chr5 50683365 50683365 1 + G C LUSC 50683364 + 50683344 50683384 41 CCAAGTGCAGCATCGGCTTCAGCAAGAACGACTTCGTGATG CCAAGTGCAGCATCGGCTTCACCAAGAACGACTTCGTGATG < 41bp 0.560998227123161 0.785918680183219 NA NA prediction 0.449840906120115 Functional Gain - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50683364 chr5:50683365 nonsynonymous SNV 1.000 2 22 hm6Am_associated_SNPs_3117 0 0 0 0 1 ISL1 chr5:50683324 3'AG 50683324 Downstream 42bp
1418 chr9 139252558 139252558 1 + G C SARC 139252557 + 139252537 139252577 41 GGACTTCTTCAGCCTCATTCAGAGGGTGCAGGCTAAGCGCA GGACTTCTTCAGCCTCATTCACAGGGTGCAGGCTAAGCGCA < 41bp 0.585895148103762 0.810782546366781 NA NA prediction 0.449774796526038 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139252557 chr9:139252558 nonsynonymous SNV 0.998 5 22 hm6Am_associated_SNPs_3119 0 0 0 0 1 GPSM1 chr9:139252466 3'AG 139252466 Downstream 93bp
1419 chr8 11213714 11213714 1 + G T rs150663678 11213716 + 11213696 11213736 41 TGCCGGTCCGCTTTCTGGGCATCTCCCCTCGGCAAATTCCA TGCCGGTCCGCTTTCTGGTCATCTCCCCTCGGCAAATTCCA < 41bp 0.318420501291486 0.724886166090215 NA NA prediction 0.44977233218043 Functional Gain - TDH ENSG00000154316 ncRNA_exonic Human transcribed_unitary_pseudogene chr8:11213716 chr8:11213714 . . 0 19 hm6Am_associated_SNPs_3121 0 0 0 0 1 TDH chr8:11213800 5'GT 11213800 Upstream 87bp
1420 chr6 7727793 7727793 1 + G C HNSC 7727792 + 7727772 7727812 41 GCGGCGCGTCCCCACTGACCAGCGCGCAGGACAGCGCCTTC GCGGCGCGTCCCCACTGACCACCGCGCAGGACAGCGCCTTC < 41bp 0.572657800365826 0.797461565678656 NA NA prediction 0.44960753062566 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7727792 chr6:7727793 nonsynonymous SNV 0.962 0 22 hm6Am_associated_SNPs_3123 0 0 1 0 1 BMP6 chr6:7727852 5'GT 7727852 Upstream 60bp
1421 chr7 934986 934986 1 + G C LUSC 934985 + 934965 935005 41 TTCCAGGGAACCTTCTGACCAGCCTCATGGGCTCCTCAGAG TTCCAGGGAACCTTCTGACCACCCTCATGGGCTCCTCAGAG < 41bp 0.459298041922215 0.724705932224012 NA NA prediction 0.449411864448023 Functional Gain - GET4 ENSG00000239857 CDS Human protein_coding chr7:934985 chr7:934986 nonsynonymous SNV 0.997 1 22 hm6Am_associated_SNPs_3127 0 0 1 0 1 GET4 chr7:934971 3'AG 934971 Downstream 16bp
1422 chr9 137772729 137772729 1 + G C LUAD 137772731 + 137772711 137772751 41 TGCTGCTCTCTTTCCTGGGCATGGCCTGGGCTCTCCAGGCG TGCTGCTCTCTTTCCTGGCCATGGCCTGGGCTCTCCAGGCG < 41bp 0.682961080371028 0.907635195544279 NA NA prediction 0.449348230346502 Functional Gain - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137772731 chr9:137772729 nonsynonymous SNV 0.016 0 19 hm6Am_associated_SNPs_3129 0 0 0 0 1 FCN2 chr9:137772767 5'GT 137772767 Upstream 39bp
1423 chr17 79633898 79633898 1 + G A rs186574945 79633900 + 79633880 79633920 41 AGTGCAGCCGCTGGGGAAGCAGCGCCCAGCCCCGTGGCCCG AGTGCAGCCGCTGGGGAAACAGCGCCCAGCCCCGTGGCCCG < 41bp 0.57618035255807 0.800778662139762 NA NA prediction 0.449196619163383 Functional Gain - CCDC137 ENSG00000185298 CDS Human protein_coding chr17:79633900 chr17:79633898 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_3134 0 0 1 0 1 CCDC137 chr17:79633930 5'GT 79633930 Upstream 33bp
1424 chr19 14517366 14517366 1 + G C BLCA 14517365 + 14517345 14517385 41 GCAAGGGCTACGGCCGCCCCAGATAGTGAGTGCAGCGAGAT GCAAGGGCTACGGCCGCCCCACATAGTGAGTGCAGCGAGAT < 41bp 0.486779312186813 0.724498872173624 NA NA prediction 0.448997744347248 Functional Gain - ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14517365 chr19:14517366 nonsynonymous SNV 0.030 0 22 hm6Am_associated_SNPs_3137 0 0 0 0 1 ADGRE5 chr19:14517369 5'GT 14517369 Upstream 4bp
1425 chr12 97078968 97078968 1 + G T SKCM 97078970 + 97078950 97078990 41 AGTTTCTGTCAAGAGTTGGCATCTGGGGGTGTTTGCAAGGA AGTTTCTGTCAAGAGTTGTCATCTGGGGGTGTTTGCAAGGA < 41bp 0.307290491071354 0.724218651557831 NA NA prediction 0.448437303115662 Functional Gain - CFAP54 ENSG00000188596 CDS Human protein_coding chr12:97078970 chr12:97078968 nonsynonymous SNV 0.868 4 19 hm6Am_associated_SNPs_3151 0 0 0 0 1 CFAP54 chr12:97079016 5'GT 97079016 Upstream 49bp
1426 chr16 29113369 29113369 1 + G C LGG 29113368 + 29113348 29113388 41 AACAATCGCCAGATGCTGCCAGTCATTAGGAGTACCACTGG AACAATCGCCAGATGCTGCCACTCATTAGGAGTACCACTGG < 41bp 0.485332362620753 0.724180703268321 NA NA prediction 0.448361406536641 Functional Gain - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29113368 chr16:29113369 . . 0 22 hm6Am_associated_SNPs_3154 0 0 0 0 2 RRN3P2 chr16:29113308 3'AG 29113308 Downstream 62bp
1427 chr16 29113369 29113369 1 + G C LGG 29113368 + 29113348 29113388 41 AACAATCGCCAGATGCTGCCAGTCATTAGGAGTACCACTGG AACAATCGCCAGATGCTGCCACTCATTAGGAGTACCACTGG < 41bp 0.485332362620753 0.724180703268321 NA NA prediction 0.448361406536641 Functional Gain - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29113368 chr16:29113369 . . 0 22 hm6Am_associated_SNPs_3154 0 0 0 0 2 RRN3P2 chr16:29113460 5'GT 29113460 Upstream 92bp
1428 chr8 8094759 8094759 1 + G A rs545533779 8094761 + 8094741 8094781 41 ACGTGGCCTTCGCTGTCCGCAATTGAGAGACGTGCCAGCTG ACGTGGCCTTCGCTGTCCACAATTGAGAGACGTGCCAGCTG < 41bp 0.473983982566735 0.724104118674521 NA NA prediction 0.448208237349042 Functional Gain - FAM86B3P ENSG00000173295 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr8:8094761 chr8:8094759 . . 0 19 hm6Am_associated_SNPs_3156 0 0 0 0 1 FAM86B3P chr8:8094797 5'GT 8094797 Upstream 39bp
1429 chr19 16145773 16145773 1 + G A rs372310460 16145775 + 16145755 16145795 41 TGAACGCCATCAGCCGCCGCACCTCCATCTTCCCTCCTCCC TGAACGCCATCAGCCGCCACACCTCCATCTTCCCTCCTCCC < 41bp 0.476481029193424 0.724091188462766 NA NA prediction 0.448182376925532 Functional Gain - LINC00905 ENSG00000167459;ENSG00000267609 ncRNA_exonic Human other chr19:16145775 chr19:16145773 . . 0 19 hm6Am_associated_SNPs_3157 0 0 0 0 1 LINC00905 chr19:16145822 5'GT 16145822 Upstream 50bp
1430 chr11 44995875 44995875 1 + G A rs11826918 44995877 + 44995857 44995897 41 GGCCTGGTTTTTCACAGGGCACCATTGAGACCACAGGAAGT GGCCTGGTTTTTCACAGGACACCATTGAGACCACAGGAAGT < 41bp 0.479756810146936 0.724087771055972 NA NA prediction 0.448175542111945 Functional Gain - LOC221122 ENSG00000254654 ncRNA_exonic Human lincRNA chr11:44995877 chr11:44995875 . . 0 19 hm6Am_associated_SNPs_3159 0 0 0 1 1 LOC221122 chr11:44995958 5'GT 44995958 Upstream 84bp
1431 chr2 239075655 239075655 1 + G A UCEC 239075657 + 239075637 239075677 41 GCTGCTCCCTCACAGTGCGCAGTGGCTCCCACTTCAGTGCT GCTGCTCCCTCACAGTGCACAGTGGCTCCCACTTCAGTGCT < 41bp 0.57583169771064 0.799833494948512 NA NA prediction 0.448003594475744 Functional Gain - ERFE ENSG00000178752 CDS Human protein_coding chr2:239075657 chr2:239075655 nonsynonymous SNV 0.893 1 19 hm6Am_associated_SNPs_3163 0 0 0 0 1 ERFE chr2:239075597 3'AG 239075597 Downstream 59bp
1432 chr20 3028475 3028475 1 + G C BLCA 3028474 + 3028454 3028494 41 ACTACAACTGGGCCATCACCAGAGAGGGGCTGGTGGTCAGG ACTACAACTGGGCCATCACCACAGAGGGGCTGGTGGTCAGG < 41bp 0.452497904037075 0.72395628091172 NA NA prediction 0.44791256182344 Functional Gain - MRPS26 ENSG00000125901 CDS Human protein_coding chr20:3028474 chr20:3028475 nonsynonymous SNV 0.978 1 22 hm6Am_associated_SNPs_3168 0 0 1 0 1 MRPS26 chr20:3028381 3'AG 3028381 Downstream 95bp
1433 chr6 3850051 3850051 1 + G A CESC 3850053 + 3850033 3850073 41 GTAGGCGCGGGCCATGGCGCAGTACAAGGGCACCATGCGCG GTAGGCGCGGGCCATGGCACAGTACAAGGGCACCATGCGCG < 41bp 0.577166641506598 0.80092989691308 NA NA prediction 0.447526510812964 Functional Gain - FAM50B ENSG00000145945 CDS Human sense_overlapping chr6:3850053 chr6:3850051 synonymous SNV . 0 19 hm6Am_associated_SNPs_3172 0 0 0 0 1 FAM50B chr6:3850023 3'AG 3850023 Downstream 29bp
1434 chr16 81279132 81279132 1 + G A BLCA 81279134 + 81279114 81279154 41 CCGCAATGGGCCTGGGATGCACACAGTTGGGGAGTCCAGAT CCGCAATGGGCCTGGGATACACACAGTTGGGGAGTCCAGAT < 41bp 0.454968607291454 0.723724607086429 NA NA prediction 0.447449214172859 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81279134 chr16:81279132 nonsynonymous SNV 0.951 2 19 hm6Am_associated_SNPs_3174 0 0 0 0 2 BCO1 chr16:81279080 3'AG 81279080 Downstream 53bp
1435 chr16 81279132 81279132 1 + G A BLCA 81279134 + 81279114 81279154 41 CCGCAATGGGCCTGGGATGCACACAGTTGGGGAGTCCAGAT CCGCAATGGGCCTGGGATACACACAGTTGGGGAGTCCAGAT < 41bp 0.454968607291454 0.723724607086429 NA NA prediction 0.447449214172859 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81279134 chr16:81279132 nonsynonymous SNV 0.951 2 19 hm6Am_associated_SNPs_3174 0 0 0 0 2 BCO1 chr16:81279208 5'GT 81279208 Upstream 77bp
1436 chr9 133540165 133540165 1 + G A UCEC 133540167 + 133540147 133540187 41 TCCTGTACGGCCGCTGGCGCAACGTGCTCGGGGAGCAGCTC TCCTGTACGGCCGCTGGCACAACGTGCTCGGGGAGCAGCTC < 41bp 0.554830097419587 0.778465832649113 NA NA prediction 0.447271470459052 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133540167 chr9:133540165 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3178 0 0 0 0 1 PRDM12 chr9:133540263 5'GT 133540263 Upstream 99bp
1437 chr17 72945415 72945415 1 + G C BLCA 72945414 + 72945394 72945434 41 AAAGGATTTCTACGGCTACCAGATATGGTTCGCCATCGTCA AAAGGATTTCTACGGCTACCACATATGGTTCGCCATCGTCA < 41bp 0.484672948682145 0.723611284320209 NA NA prediction 0.447222568640417 Functional Gain - OTOP3 ENSG00000182938 CDS Human protein_coding chr17:72945414 chr17:72945415 nonsynonymous SNV 0.949 1 22 hm6Am_associated_SNPs_3179 0 0 0 0 1 OTOP3 chr17:72945341 3'AG 72945341 Downstream 75bp
1438 chr16 3019837 3019837 1 + G A BLCA 3019839 + 3019819 3019859 41 ACTGGGCAACATCTACACGCACGGTGAGCCGCGTCCCGCAA ACTGGGCAACATCTACACACACGGTGAGCCGCGTCCCGCAA < 41bp 0.467384868372004 0.723600401279231 NA NA prediction 0.447200802558462 Functional Gain - PAQR4 ENSG00000162073 CDS Human protein_coding chr16:3019839 chr16:3019837 synonymous SNV . 0 19 hm6Am_associated_SNPs_3181 0 0 1 0 1 PAQR4 chr16:3019841 5'GT 3019841 Upstream 5bp
1439 chr17 5972566 5972566 1 + G A rs74878724 5972568 + 5972548 5972588 41 TGCACATGGCAGAGCAGGGCAGATGCTGTGACTTGGCGGCT TGCACATGGCAGAGCAGGACAGATGCTGTGACTTGGCGGCT < 41bp 0.583707116525058 0.807213108075003 NA NA prediction 0.447011983099891 Functional Gain - LOC339166;WSCD1 ENSG00000179314 CDS Human protein_coding chr17:5972568 chr17:5972566 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_3186 0 0 0 0 1 LOC339166;WSCD1 chr17:5972631 5'GT 5972631 Upstream 66bp
1440 chrX 47098853 47098853 1 + G A UCEC 47098855 + 47098835 47098875 41 CAGCTGGTATGGTCTAGAGCATGGCCAGCCACCCATTGAAC CAGCTGGTATGGTCTAGAACATGGCCAGCCACCCATTGAAC < 41bp 0.464869434136731 0.723478089229845 NA NA prediction 0.44695617845969 Functional Gain - USP11 ENSG00000102226 CDS Human protein_coding chrX:47098855 chrX:47098853 synonymous SNV . 0 19 hm6Am_associated_SNPs_3187 0 0 1 0 1 USP11 chrX:47098880 5'GT 47098880 Upstream 28bp
1441 chr14 76957818 76957818 1 + G C LUSC 76957817 + 76957797 76957837 41 AAGCCTCTCCCTGGGGGACCAGATGAGCCTGCTGCAGAGTG AAGCCTCTCCCTGGGGGACCACATGAGCCTGCTGCAGAGTG < 41bp 0.480294524743148 0.723426554193081 NA NA prediction 0.446853108386163 Functional Gain - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76957817 chr14:76957818 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_3190 0 0 1 0 1 ESRRB chr14:76957790 3'AG 76957790 Downstream 29bp
1442 chr1 109772164 109772164 1 + G A LUSC 109772166 + 109772146 109772186 41 AGAGATTGGGAACCTTCTGCACCCTTCTGTACCCATCAGTA AGAGATTGGGAACCTTCTACACCCTTCTGTACCCATCAGTA < 41bp 0.582445283700844 0.805777580942198 NA NA prediction 0.446664594482707 Functional Gain - SARS ENSG00000031698 CDS Human protein_coding chr1:109772166 chr1:109772164 synonymous SNV . 0 19 hm6Am_associated_SNPs_3191 0 0 1 0 1 SARS chr1:109772194 5'GT 109772194 Upstream 31bp
1443 chr12 6562262 6562262 1 + G A rs201962928 6562264 + 6562244 6562284 41 GCAGAGGGGCAGTGGCGGGCAGTGGACGTGGTCCTAGACTG GCAGAGGGGCAGTGGCGGACAGTGGACGTGGTCCTAGACTG < 41bp 0.460954583200563 0.723240091126294 NA NA prediction 0.446480182252589 Functional Gain - TAPBPL ENSG00000139192 CDS Human protein_coding chr12:6562264 chr12:6562262 nonsynonymous SNV 0.002 1 19 hm6Am_associated_SNPs_3197 0 0 1 0 1 TAPBPL chr12:6562233 3'AG 6562233 Downstream 30bp
1444 chr11 13398097 13398097 1 + G C BLCA 13398096 + 13398076 13398116 41 TTTCTGGCCTGTCCAGGTCCAGAGTGGACACCGGACACCTT TTTCTGGCCTGTCCAGGTCCACAGTGGACACCGGACACCTT < 41bp 0.497315641313592 0.723161998930595 NA NA prediction 0.44632399786119 Functional Gain - ARNTL ENSG00000133794 CDS Human protein_coding chr11:13398096 chr11:13398097 nonsynonymous SNV . 0 22 hm6Am_associated_SNPs_3200 0 0 0 0 1 ARNTL chr11:13398092 3'AG 13398092 Downstream 6bp
1445 chr6 32006322 32006322 1 + G A COAD 32006324 + 32006304 32006344 41 GGGCTTCTTGCACCTGCTGCAGCCCGACCTCCCCATCTATC GGGCTTCTTGCACCTGCTACAGCCCGACCTCCCCATCTATC < 41bp 0.511352298602356 0.734499928635285 NA NA prediction 0.446295260065858 Functional Gain - CYP21A2 ENSG00000231852 CDS Human protein_coding chr6:32006324 chr6:32006322 synonymous SNV . 0 19 hm6Am_associated_SNPs_3201 0 0 0 0 1 CYP21A2 chr6:32006401 5'GT 32006401 Upstream 80bp
1446 chr3 135978060 135978060 1 + G A UCEC 135978062 + 135978042 135978082 41 CTCCCGCTTGTCATCTCAGCACTTTGGGAGGCCGAGGTGGG CTCCCGCTTGTCATCTCAACACTTTGGGAGGCCGAGGTGGG < 41bp 0.465050021827179 0.723102199475336 NA NA prediction 0.446204398950671 Functional Gain - PCCB ENSG00000114054 CDS Human protein_coding chr3:135978062 chr3:135978060 nonsynonymous SNV 0.008 1 19 hm6Am_associated_SNPs_3203 0 0 0 0 2 PCCB chr3:135978018 3'AG 135978018 Downstream 43bp
1447 chr3 135978060 135978060 1 + G A UCEC 135978062 + 135978042 135978082 41 CTCCCGCTTGTCATCTCAGCACTTTGGGAGGCCGAGGTGGG CTCCCGCTTGTCATCTCAACACTTTGGGAGGCCGAGGTGGG < 41bp 0.465050021827179 0.723102199475336 NA NA prediction 0.446204398950671 Functional Gain - PCCB ENSG00000114054 CDS Human protein_coding chr3:135978062 chr3:135978060 nonsynonymous SNV 0.008 1 19 hm6Am_associated_SNPs_3203 0 0 0 0 2 PCCB chr3:135978077 5'GT 135978077 Upstream 18bp
1448 chr15 79603705 79603705 1 + G T UCEC 79603707 + 79603687 79603727 41 GCTGCCGGACAACGCCAAGCAGTGCTTCCACGAGGAGGTGG GCTGCCGGACAACGCCAATCAGTGCTTCCACGAGGAGGTGG < 41bp 0.717226874062649 0.940310812698161 NA NA prediction 0.446167877271025 Functional Gain - TMED3 ENSG00000166557 CDS Human protein_coding chr15:79603707 chr15:79603705 nonsynonymous SNV 0.994 1 19 hm6Am_associated_SNPs_3205 0 0 1 1 1 TMED3 chr15:79603759 5'GT 79603759 Upstream 55bp
1449 chr11 114118068 114118068 1 + G A COAD 114118070 + 114118050 114118090 41 CAAGCATCAGCTGGAGACGCACTATAGGGTGCACACAGGTA CAAGCATCAGCTGGAGACACACTATAGGGTGCACACAGGTA < 41bp 0.59567239933021 0.818713234786196 NA NA prediction 0.446081670911971 Functional Gain - ZBTB16 ENSG00000109906 CDS Human protein_coding chr11:114118070 chr11:114118068 synonymous SNV . 0 19 hm6Am_associated_SNPs_3208 0 0 0 0 1 ZBTB16 chr11:114118087 5'GT 114118087 Upstream 20bp
1450 chr7 100363053 100363053 1 + G A PCPG 100363055 + 100363035 100363075 41 GCCATTCAGGATTCTCCGGCATGTTCTGCTCAGACCGGTGC GCCATTCAGGATTCTCCGACATGTTCTGCTCAGACCGGTGC < 41bp 0.55303275181891 0.775962062859747 NA NA prediction 0.445858622081674 Functional Gain - ZAN ENSG00000146839 CDS Human protein_coding chr7:100363055 chr7:100363053 nonsynonymous SNV 0.002 1 19 hm6Am_associated_SNPs_3212 0 0 0 0 1 ZAN chr7:100362975 3'AG 100362975 Downstream 79bp
1451 chr7 65557829 65557829 1 + G A COAD 65557831 + 65557811 65557851 41 AGTATGGTGCCCTGGGCGGCACTGCGCGCTCCAGCGTCGAC AGTATGGTGCCCTGGGCGACACTGCGCGCTCCAGCGTCGAC < 41bp 0.566817306909388 0.789722189300814 NA NA prediction 0.445809764782851 Functional Gain - ASL ENSG00000126522 CDS Human protein_coding chr7:65557831 chr7:65557829 nonsynonymous SNV 0.311 5 19 hm6Am_associated_SNPs_3213 0 0 1 0 1 ASL chr7:65557755 3'AG 65557755 Downstream 75bp
1452 chr19 50185273 50185273 1 + G A GBM 50185275 + 50185255 50185295 41 ACGTCGGCTCGGGCACCGGCATCCTCTGCATGTTTGCTGCC ACGTCGGCTCGGGCACCGACATCCTCTGCATGTTTGCTGCC < 41bp 0.465697399478893 0.722893419071672 NA NA prediction 0.445786838143345 Functional Gain - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50185275 chr19:50185273 nonsynonymous SNV 0.604 5 19 hm6Am_associated_SNPs_3214 0 0 1 0 1 PRMT1 chr19:50185322 5'GT 50185322 Upstream 50bp
1453 chr12 132588943 132588943 1 + G A COAD 132588945 + 132588925 132588965 41 CCAGACCCAGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGC CCAGACCCAGAGTCCCACACAGCCCAGTCCGGGGCCGGGGC < 41bp 0.587765761231362 0.810640688291169 NA NA prediction 0.445749854119615 Functional Gain - EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588945 chr12:132588943 synonymous SNV . 0 19 hm6Am_associated_SNPs_3215 0 0 0 0 1 EP400NL chr12:132588923 3'AG 132588923 Downstream 21bp
1454 chr5 148742273 148742273 1 + G C KIRC 148742272 + 148742252 148742292 41 GCACTTTGGACCTCGGGTGCAGATCGACGTGTACGAGAAGG GCACTTTGGACCTCGGGTGCACATCGACGTGTACGAGAAGG < 41bp 0.542980050037922 0.765837273538671 NA NA prediction 0.445714447001498 Functional Gain - PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148742272 chr5:148742273 nonsynonymous SNV 0.988 3 22 hm6Am_associated_SNPs_3217 0 0 1 0 1 PCYOX1L chr5:148742200 3'AG 148742200 Downstream 74bp
1455 chr12 6969543 6969543 1 + G A COAD 6969545 + 6969525 6969565 41 CCCAGGAAGTTCAAGATGGCATTGCCCCTCGGATGTTCAAG CCCAGGAAGTTCAAGATGACATTGCCCCTCGGATGTTCAAG < 41bp 0.462209339566068 0.722744123324682 NA NA prediction 0.445488246649363 Functional Gain - USP5 ENSG00000111667 CDS Human protein_coding chr12:6969545 chr12:6969543 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3221 0 0 1 0 1 USP5 chr12:6969530 3'AG 6969530 Downstream 14bp
1456 chr4 40337875 40337875 1 + G C HNSC 40337874 + 40337854 40337894 41 GGCAGATGGAAAATATGCTCAGAAGTTGTTTAATGACCTTT GGCAGATGGAAAATATGCTCACAAGTTGTTTAATGACCTTT < 41bp 0.584132427910593 0.806874268896775 NA NA prediction 0.445483681972363 Functional Gain - CHRNA9 ENSG00000174343 CDS Human protein_coding chr4:40337874 chr4:40337875 nonsynonymous SNV 0.999 1 22 hm6Am_associated_SNPs_3222 0 0 0 0 1 CHRNA9 chr4:40337844 3'AG 40337844 Downstream 32bp
1457 chr12 96900852 96900852 1 + G T UCEC 96900854 + 96900834 96900874 41 AGTGGCTCTGCCACAAGAGCATCTTTGCTGGATTATCTTCA AGTGGCTCTGCCACAAGATCATCTTTGCTGGATTATCTTCA < 41bp 0.306229680744964 0.722679541917547 NA NA prediction 0.445359083835094 Functional Gain - CFAP54 ENSG00000188596 CDS Human protein_coding chr12:96900854 chr12:96900852 nonsynonymous SNV 0.977 4 19 hm6Am_associated_SNPs_3226 0 0 0 0 1 CFAP54 chr12:96900877 5'GT 96900877 Upstream 26bp
1458 chr1 17928659 17928659 1 + G A rs114123617 17928661 + 17928641 17928681 41 AATGGGGATGCAGCGGACGCAGCCTTCTCCGGGGCCCGGCA AATGGGGATGCAGCGGACACAGCCTTCTCCGGGGCCCGGCA < 41bp 0.473289657031839 0.722672678580541 NA NA prediction 0.445345357161081 Functional Gain - ARHGEF10L ENSG00000074964 CDS Human protein_coding chr1:17928661 chr1:17928659 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_3227 0 0 1 0 1 ARHGEF10L chr1:17928713 5'GT 17928713 Upstream 55bp
1459 chr17 40720920 40720920 1 + G A UCEC 40720922 + 40720902 40720942 41 AAAGACCGGCGGCGGCGCGCACACACTCAGGCTGAGCAGAA AAAGACCGGCGGCGGCGCACACACACTCAGGCTGAGCAGAA < 41bp 0.457554436976658 0.722649379979682 NA NA prediction 0.445298759959364 Functional Gain - MLX ENSG00000108788 CDS Human protein_coding chr17:40720922 chr17:40720920 nonsynonymous SNV 0.994 3 19 hm6Am_associated_SNPs_3228 0 0 1 0 2 MLX chr17:40720855 3'AG 40720855 Downstream 66bp
1460 chr17 40720920 40720920 1 + G A UCEC 40720922 + 40720902 40720942 41 AAAGACCGGCGGCGGCGCGCACACACTCAGGCTGAGCAGAA AAAGACCGGCGGCGGCGCACACACACTCAGGCTGAGCAGAA < 41bp 0.457554436976658 0.722649379979682 NA NA prediction 0.445298759959364 Functional Gain - MLX ENSG00000108788 CDS Human protein_coding chr17:40720922 chr17:40720920 nonsynonymous SNV 0.994 3 19 hm6Am_associated_SNPs_3228 0 0 1 0 2 MLX chr17:40720961 5'GT 40720961 Upstream 42bp
1461 chr6 56882125 56882125 1 + G A PRAD 56882127 + 56882107 56882147 41 ACTCACAGCCTGACAGGGGCAAAATCCTCTACTTCAAGGGA ACTCACAGCCTGACAGGGACAAAATCCTCTACTTCAAGGGA < 41bp 0.470700187552647 0.722648198879473 NA NA prediction 0.445296397758945 Functional Gain - BEND6 ENSG00000151917 CDS Human protein_coding chr6:56882127 chr6:56882125 nonsynonymous SNV 0.987 3 19 hm6Am_associated_SNPs_3229 0 0 0 0 1 BEND6 chr6:56882197 5'GT 56882197 Upstream 73bp
1462 chr2 75874258 75874258 1 + G T UCEC 75874260 + 75874240 75874280 41 GGCCTGTCCGGCAGCAGAGCACTGGGCCTTCCGAGCCCGGT GGCCTGTCCGGCAGCAGATCACTGGGCCTTCCGAGCCCGGT < 41bp 0.713977970742658 0.936562773726906 NA NA prediction 0.445169605968496 Functional Gain - MRPL19 ENSG00000115364 CDS Human protein_coding chr2:75874260 chr2:75874258 nonsynonymous SNV 0.261 0 19 hm6Am_associated_SNPs_3231 0 0 1 0 2 MRPL19 chr2:75874228 3'AG 75874228 Downstream 31bp
1463 chr2 75874258 75874258 1 + G T UCEC 75874260 + 75874240 75874280 41 GGCCTGTCCGGCAGCAGAGCACTGGGCCTTCCGAGCCCGGT GGCCTGTCCGGCAGCAGATCACTGGGCCTTCCGAGCCCGGT < 41bp 0.713977970742658 0.936562773726906 NA NA prediction 0.445169605968496 Functional Gain - MRPL19 ENSG00000115364 CDS Human protein_coding chr2:75874260 chr2:75874258 nonsynonymous SNV 0.261 0 19 hm6Am_associated_SNPs_3231 0 0 1 0 2 MRPL19 chr2:75874345 5'GT 75874345 Upstream 88bp
1464 chr1 16051906 16051906 1 + G C BLCA 16051905 + 16051885 16051925 41 CAGGAGCCCCACCCAGCGCCAGAACCCCTTCAACGAGGAGC CAGGAGCCCCACCCAGCGCCACAACCCCTTCAACGAGGAGC < 41bp 0.4545748272056 0.722470241566095 NA NA prediction 0.44494048313219 Functional Gain - PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16051905 chr1:16051906 nonsynonymous SNV 0.991 0 22 hm6Am_associated_SNPs_3238 0 0 0 0 1 PLEKHM2 chr1:16051812 3'AG 16051812 Downstream 95bp
1465 chrX 50654046 50654046 1 + G A UCEC 50654048 + 50654028 50654068 41 GGCACCCTAGAGAGAACCGCACCATTGGGGCCACCATGGTG GGCACCCTAGAGAGAACCACACCATTGGGGCCACCATGGTG < 41bp 0.453930516696354 0.722380238449325 NA NA prediction 0.44476047689865 Functional Gain - BMP15 ENSG00000130385 CDS Human protein_coding chrX:50654048 chrX:50654046 nonsynonymous SNV 0.997 2 19 hm6Am_associated_SNPs_3241 0 0 0 0 1 BMP15 chrX:50654111 5'GT 50654111 Upstream 66bp
1466 chr15 25468286 25468286 1 + G T LUAD 25468288 + 25468268 25468308 41 AGGTGCTCAGTCCCTGGTGCACTGAAGCTCCAGCCCTTCCT AGGTGCTCAGTCCCTGGTTCACTGAAGCTCCAGCCCTTCCT < 41bp 0.707280911840903 0.929639373587727 NA NA prediction 0.444716923493647 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25468288 chr15:25468286 . . 0 19 hm6Am_associated_SNPs_3245 0 0 0 0 2 SNHG14 chr15:25468206 3'AG 25468206 Downstream 81bp
1467 chr15 25468286 25468286 1 + G T LUAD 25468288 + 25468268 25468308 41 AGGTGCTCAGTCCCTGGTGCACTGAAGCTCCAGCCCTTCCT AGGTGCTCAGTCCCTGGTTCACTGAAGCTCCAGCCCTTCCT < 41bp 0.707280911840903 0.929639373587727 NA NA prediction 0.444716923493647 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25468288 chr15:25468286 . . 0 19 hm6Am_associated_SNPs_3245 0 0 0 0 2 SNHG14 chr15:25468337 5'GT 25468337 Upstream 52bp
1468 chr8 6338339 6338339 1 + G A GBM 6338341 + 6338321 6338361 41 TTTCCGGGAAGCCACTTCGCACCCTGAATGTGCTGCTGGGA TTTCCGGGAAGCCACTTCACACCCTGAATGTGCTGCTGGGA < 41bp 0.580515898536013 0.802767924581261 NA NA prediction 0.444504052090496 Functional Gain - MCPH1 ENSG00000147316 CDS Human protein_coding chr8:6338341 chr8:6338339 nonsynonymous SNV 0.067 4 19 hm6Am_associated_SNPs_3249 0 0 1 0 1 MCPH1 chr8:6338397 5'GT 6338397 Upstream 59bp
1469 chr7 100553034 100553034 1 + G C rs28420153 100553033 + 100553013 100553053 41 CCAGCACCTTCTATGGTTCCAGTTGTGAGTTTGCTGTGGAA CCAGCACCTTCTATGGTTCCACTTGTGAGTTTGCTGTGGAA < 41bp 0.504777738891365 0.726927822818453 NA NA prediction 0.444300167854177 Functional Gain - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100553033 chr7:100553034 nonsynonymous SNV 0.000 0 22 hm6Am_associated_SNPs_3253 0 0 0 1 1 MUC3A chr7:100553066 5'GT 100553066 Upstream 33bp
1470 chr2 179464352 179464352 1 + G C HNSC 179464351 + 179464331 179464371 41 GCTGTGATGGTATATAAGCCAGTGTCACTCCTGCGAGACTG GCTGTGATGGTATATAAGCCACTGTCACTCCTGCGAGACTG < 41bp 0.562579213561356 0.784686107938256 NA NA prediction 0.4442137887538 Functional Gain - TTN ENSG00000155657 CDS Human protein_coding chr2:179464351 chr2:179464352 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_3256 0 0 0 0 1 TTN chr2:179464321 3'AG 179464321 Downstream 32bp
1471 chr21 47918713 47918713 1 + G T SARC 47918715 + 47918695 47918735 41 GGGGCCGCCGCTACCACTGCACTCGCAGGCCTCGAGGCCCA GGGGCCGCCGCTACCACTTCACTCGCAGGCCTCGAGGCCCA < 41bp 0.307748316227556 0.721933508282003 NA NA prediction 0.443867016564007 Functional Gain - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47918715 chr21:47918713 nonsynonymous SNV 0.012 0 19 hm6Am_associated_SNPs_3260 0 0 1 0 1 DIP2A chr21:47918746 5'GT 47918746 Upstream 34bp
1472 chr1 70877188 70877188 1 + G T UCEC 70877190 + 70877170 70877210 41 TGTGGGCCAGGATCCAGAGCAATGGACCTCCAGGGCTGTAG TGTGGGCCAGGATCCAGATCAATGGACCTCCAGGGCTGTAG < 41bp 0.718882516184743 0.940780973093854 NA NA prediction 0.443796913818222 Functional Gain - CTH ENSG00000116761 CDS Human protein_coding chr1:70877190 chr1:70877188 nonsynonymous SNV 0.209 1 19 hm6Am_associated_SNPs_3261 0 0 1 1 1 CTH chr1:70877266 5'GT 70877266 Upstream 79bp
1473 chr3 186299209 186299209 1 + G T HNSC 186299211 + 186299191 186299231 41 CTCCTGGCAAACGGAAGTGCAATTGTCGGCAAGAGATGCGG CTCCTGGCAAACGGAAGTTCAATTGTCGGCAAGAGATGCGG < 41bp 0.297286068244818 0.721822189399982 NA NA prediction 0.443644378799964 Functional Gain - DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186299211 chr3:186299209 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3264 0 0 1 0 2 DNAJB11 chr3:186299160 3'AG 186299160 Downstream 50bp
1474 chr3 186299209 186299209 1 + G T HNSC 186299211 + 186299191 186299231 41 CTCCTGGCAAACGGAAGTGCAATTGTCGGCAAGAGATGCGG CTCCTGGCAAACGGAAGTTCAATTGTCGGCAAGAGATGCGG < 41bp 0.297286068244818 0.721822189399982 NA NA prediction 0.443644378799964 Functional Gain - DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186299211 chr3:186299209 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3264 0 0 1 0 2 DNAJB11 chr3:186299302 5'GT 186299302 Upstream 94bp
1475 chr12 7080186 7080186 1 + G A rs782495453 7080188 + 7080168 7080208 41 AAGCGGCCCCGACTAGGGGCAGGAAACAAGATCGGAGGCCG AAGCGGCCCCGACTAGGGACAGGAAACAAGATCGGAGGCCG < 41bp 0.467791564109905 0.721786505271635 NA NA prediction 0.443573010543269 Functional Gain - EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080188 chr12:7080186 nonsynonymous SNV 0.904 0 19 hm6Am_associated_SNPs_3265 0 0 1 0 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 68bp
1476 chr22 31795677 31795677 1 + G T UCEC 31795679 + 31795659 31795699 41 TACTCGCCACGATGAGCAGCACCTTAGCTAAGATCGCGGAG TACTCGCCACGATGAGCATCACCTTAGCTAAGATCGCGGAG < 41bp 0.717990400562287 0.939722972965762 NA NA prediction 0.443465144806951 Functional Gain - DRG1 ENSG00000185721 CDS Human protein_coding chr22:31795679 chr22:31795677 nonsynonymous SNV 0.997 2 19 hm6Am_associated_SNPs_3267 0 0 1 0 1 DRG1 chr22:31795711 5'GT 31795711 Upstream 35bp
1477 chr13 27254286 27254286 1 + G A GBM 27254288 + 27254268 27254308 41 ATTGAGTTTATGAGTGACGCAAAGAAACTGGAGCAGGCAGG ATTGAGTTTATGAGTGACACAAAGAAACTGGAGCAGGCAGG < 41bp 0.574584787177508 0.796287500181301 NA NA prediction 0.443405426007585 Functional Gain - WASF3 ENSG00000132970 CDS Human protein_coding chr13:27254288 chr13:27254286 nonsynonymous SNV 0.776 0 19 hm6Am_associated_SNPs_3268 0 0 1 0 1 WASF3 chr13:27254338 5'GT 27254338 Upstream 53bp
1478 chr3 137729235 137729235 1 + G C BLCA 137729234 + 137729214 137729254 41 CTGGAGGAGCTGCGTGAGGCAGAGTTCAGGCTTCACCGAAT CTGGAGGAGCTGCGTGAGGCACAGTTCAGGCTTCACCGAAT < 41bp 0.470307577140754 0.721669152751611 NA NA prediction 0.443338305503221 Functional Gain - CLDN18 ENSG00000066405 CDS Human protein_coding chr3:137729234 chr3:137729235 nonsynonymous SNV 0.398 2 22 hm6Am_associated_SNPs_3270 0 0 0 0 1 CLDN18 chr3:137729287 5'GT 137729287 Upstream 53bp
1479 chr6 47775959 47775959 1 + G C LUAD 47775958 + 47775938 47775978 41 GCAGTGGTGTCTGTGTGGTCAGCTTTTGGAAGGCCAGACTC GCAGTGGTGTCTGTGTGGTCACCTTTTGGAAGGCCAGACTC < 41bp 0.583045164615845 0.804689938099317 NA NA prediction 0.443289546966944 Functional Gain - OPN5 ENSG00000124818 CDS Human protein_coding chr6:47775958 chr6:47775959 nonsynonymous SNV 1.000 3 22 hm6Am_associated_SNPs_3272 0 0 0 0 1 OPN5 chr6:47775890 3'AG 47775890 Downstream 70bp
1480 chr3 141157126 141157126 1 + G A rs539936426 141157128 + 141157108 141157148 41 AGGCTGGAGTACAATGGCGCAATCTTGGCTCACCACAACCT AGGCTGGAGTACAATGGCACAATCTTGGCTCACCACAACCT < 41bp 0.559955190781072 0.781575292175493 NA NA prediction 0.443240202788841 Functional Gain - ZBTB38 ENSG00000177311 UTR5 Human protein_coding chr3:141157128 chr3:141157126 . . 0 19 hm6Am_associated_SNPs_3274 0 0 0 0 2 ZBTB38 chr3:141157110 3'AG 141157110 Downstream 17bp
1481 chr3 141157126 141157126 1 + G A rs539936426 141157128 + 141157108 141157148 41 AGGCTGGAGTACAATGGCGCAATCTTGGCTCACCACAACCT AGGCTGGAGTACAATGGCACAATCTTGGCTCACCACAACCT < 41bp 0.559955190781072 0.781575292175493 NA NA prediction 0.443240202788841 Functional Gain - ZBTB38 ENSG00000177311 UTR5 Human protein_coding chr3:141157128 chr3:141157126 . . 0 19 hm6Am_associated_SNPs_3274 0 0 0 0 2 ZBTB38 chr3:141157207 5'GT 141157207 Upstream 82bp
1482 chr20 5943963 5943963 1 + G A OV 5943965 + 5943945 5943985 41 GGTCATTTACTGCTCTCCGCAGCTCTCCTCTCACAGTTACG GGTCATTTACTGCTCTCCACAGCTCTCCTCTCACAGTTACG < 41bp 0.467395451549331 0.721462942267741 NA NA prediction 0.442925884535482 Functional Gain - MCM8 ENSG00000125885 CDS Human protein_coding chr20:5943965 chr20:5943963 nonsynonymous SNV 0.029 0 19 hm6Am_associated_SNPs_3283 0 0 1 0 1 MCM8 chr20:5944005 5'GT 5944005 Upstream 43bp
1483 chr6 393304 393304 1 + G A COAD 393306 + 393286 393326 41 AGGAGAAGAGCATCTTCCGCATCCCCTGGAAGCACGCGGGC AGGAGAAGAGCATCTTCCACATCCCCTGGAAGCACGCGGGC < 41bp 0.589607383733351 0.811046711305123 NA NA prediction 0.442878655143543 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:393306 chr6:393304 nonsynonymous SNV 1.000 5 19 hm6Am_associated_SNPs_3284 0 0 0 0 1 IRF4 chr6:393368 5'GT 393368 Upstream 65bp
1484 chr8 74332383 74332383 1 + G T SARC 74332385 + 74332365 74332405 41 TCTCATTGCACAATGTTTGCAAATCAATAAGGAGAAAGCCT TCTCATTGCACAATGTTTTCAAATCAATAAGGAGAAAGCCT < 41bp 0.319381024699383 0.721380672700756 NA NA prediction 0.442761345401513 Functional Gain - STAU2-AS1 ENSG00000253302 ncRNA_exonic Human antisense chr8:74332385 chr8:74332383 . . 0 19 hm6Am_associated_SNPs_3286 0 0 0 0 1 STAU2-AS1 chr8:74332474 5'GT 74332474 Upstream 92bp
1485 chr15 31619961 31619961 1 + G C TGCT 31619963 + 31619943 31619983 41 AGTTTACGGGAAATCTTCGCACCTCAAGGCGCACCTGAGAA AGTTTACGGGAAATCTTCCCACCTCAAGGCGCACCTGAGAA < 41bp 0.374296882875028 0.721376928047193 NA NA prediction 0.442753856094386 Functional Gain - KLF13 ENSG00000169926 CDS Human protein_coding chr15:31619963 chr15:31619961 synonymous SNV . 0 19 hm6Am_associated_SNPs_3287 0 0 1 0 1 KLF13 chr15:31619992 5'GT 31619992 Upstream 32bp
1486 chrX 154299885 154299885 1 + G A UCEC 154299887 + 154299867 154299907 41 GTCTCAACCACGCTCTGAGCACAGAGAAGGAGGAAGTAATG GTCTCAACCACGCTCTGAACACAGAGAAGGAGGAAGTAATG < 41bp 0.58720309099595 0.808475812834006 NA NA prediction 0.442545443676112 Functional Gain - BRCC3 ENSG00000185515 CDS Human protein_coding chrX:154299887 chrX:154299885 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3291 0 0 1 0 1 BRCC3 chrX:154299925 5'GT 154299925 Upstream 41bp
1487 chrX 47426043 47426043 1 + G A LUSC 47426045 + 47426025 47426065 41 TTTCCCCTGGCAGCCCCCGCACCCAGCACTGTGACCCGGAG TTTCCCCTGGCAGCCCCCACACCCAGCACTGTGACCCGGAG < 41bp 0.454915455259265 0.721255790913529 NA NA prediction 0.442511581827057 Functional Gain - ARAF ENSG00000078061 CDS Human protein_coding chrX:47426045 chrX:47426043 nonsynonymous SNV 0.020 0 19 hm6Am_associated_SNPs_3292 0 0 1 0 1 ARAF chrX:47426038 3'AG 47426038 Downstream 6bp
1488 chrX 119738713 119738713 1 + G A BRCA 119738715 + 119738695 119738735 41 AGCAAAGGGGGAACATGGGCAAAGGAAGGTGGGTTTTGTGC AGCAAAGGGGGAACATGGACAAAGGAAGGTGGGTTTTGTGC < 41bp 0.464093812558792 0.721205036182795 NA NA prediction 0.442410072365591 Functional Gain - MCTS1 ENSG00000232119 CDS Human protein_coding chrX:119738715 chrX:119738713 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_3293 0 0 1 0 1 MCTS1 chrX:119738722 5'GT 119738722 Upstream 10bp
1489 chr8 23428882 23428882 1 + G A UCEC 23428884 + 23428864 23428904 41 GCAGATGTACAACTCGCAGCACCGGTCAGCAATCAGCTGCA GCAGATGTACAACTCGCAACACCGGTCAGCAATCAGCTGCA < 41bp 0.466715071248079 0.721030117397974 NA NA prediction 0.442060234795948 Functional Gain - SLC25A37 ENSG00000147454 CDS Human protein_coding chr8:23428884 chr8:23428882 synonymous SNV . 0 19 hm6Am_associated_SNPs_3304 0 0 1 0 1 SLC25A37 chr8:23428848 3'AG 23428848 Downstream 35bp
1490 chrX 47445945 47445945 1 + G A LUAD 47445947 + 47445927 47445967 41 CCTGTTTATCCATCCCCTGCAAACTGCAGAGTGGCACTCAT CCTGTTTATCCATCCCCTACAAACTGCAGAGTGGCACTCAT < 41bp 0.604010261689076 0.824914189438617 NA NA prediction 0.441807855499082 Functional Gain - TIMP1 ENSG00000102265 CDS Human protein_coding chrX:47445947 chrX:47445945 nonsynonymous SNV 0.998 4 19 hm6Am_associated_SNPs_3310 0 0 1 0 1 TIMP1 chrX:47445920 3'AG 47445920 Downstream 26bp
1491 chr12 81112737 81112737 1 + G C SKCM 81112736 + 81112716 81112756 41 GCAACCTGGGTTGCCTCTCCAGGATCTGGCTTCTCTCTCTC GCAACCTGGGTTGCCTCTCCACGATCTGGCTTCTCTCTCTC < 41bp 0.451553461704944 0.720868507954324 NA NA prediction 0.441737015908648 Functional Gain - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81112736 chr12:81112737 nonsynonymous SNV 0.793 2 22 hm6Am_associated_SNPs_3314 0 0 0 0 1 MYF5 chr12:81112640 3'AG 81112640 Downstream 98bp
1492 chr7 37888482 37888482 1 + G A rs115132982 37888484 + 37888464 37888504 41 GCTGGAGAAGAAAGCCCAGCAGGAGGCCTGCTAGCCTCAGC GCTGGAGAAGAAAGCCCAACAGGAGGCCTGCTAGCCTCAGC < 41bp 0.517381808822916 0.738195531585392 NA NA prediction 0.441627445524951 Functional Gain - NME8 ENSG00000086288 UTR5 Human protein_coding chr7:37888484 chr7:37888482 . . 0 19 hm6Am_associated_SNPs_3317 0 0 0 0 1 NME8 chr7:37888426 3'AG 37888426 Downstream 57bp
1493 chr5 1201882 1201882 1 + G A rs149830504 1201884 + 1201864 1201904 41 GAAGTGGGACAACAAGGCGCAGTACATGCTCACCTGCCTGG GAAGTGGGACAACAAGGCACAGTACATGCTCACCTGCCTGG < 41bp 0.600914067863222 0.821695533273251 NA NA prediction 0.441562930820059 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1201884 chr5:1201882 synonymous SNV . 0 19 hm6Am_associated_SNPs_3319 0 0 0 0 1 SLC6A19 chr5:1201967 5'GT 1201967 Upstream 86bp
1494 chr16 29913155 29913155 1 + G A SKCM 29913157 + 29913137 29913177 41 TGAGTGCCAACACCTTCGGCAATGCCGGCTTTTCCGTTCTC TGAGTGCCAACACCTTCGACAATGCCGGCTTTTCCGTTCTC < 41bp 0.57254749850322 0.793231980662073 NA NA prediction 0.441368964317706 Functional Gain - ASPHD1 ENSG00000174939 CDS Human protein_coding chr16:29913157 chr16:29913155 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3324 0 0 1 1 1 ASPHD1 chr16:29913241 5'GT 29913241 Upstream 87bp
1495 chr6 37138549 37138549 1 + G A DLBC 37138551 + 37138531 37138571 41 TGCTTCCCCCTTTCCTAGGCAAGGAGAAGGAGCCCCTGGAG TGCTTCCCCCTTTCCTAGACAAGGAGAAGGAGCCCCTGGAG < 41bp 0.588987431429255 0.809533645587479 NA NA prediction 0.441092428316448 Functional Gain - PIM1 ENSG00000137193 CDS Human protein_coding chr6:37138551 chr6:37138549 nonsynonymous SNV 0.971 1 19 hm6Am_associated_SNPs_3330 0 0 1 0 1 PIM1 chr6:37138549 3'AG 37138549 Downstream 1bp
1496 chr5 1009632 1009632 1 + G T rs189518469 1009634 + 1009614 1009654 41 CCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAG CCGCGTACGCGAGCGGCCTCAAAGGCGCGGAGGAAGCGGAG < 41bp 0.642944585374932 0.863406435058185 NA NA prediction 0.440923699366506 Functional Gain - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1009634 chr5:1009632 nonsynonymous SNV 0.868 2 19 hm6Am_associated_SNPs_3335 0 0 0 0 2 NKD2 chr5:1009596 3'AG 1009596 Downstream 37bp
1497 chr5 1009632 1009632 1 + G T rs189518469 1009634 + 1009614 1009654 41 CCGCGTACGCGAGCGGCCGCAAAGGCGCGGAGGAAGCGGAG CCGCGTACGCGAGCGGCCTCAAAGGCGCGGAGGAAGCGGAG < 41bp 0.642944585374932 0.863406435058185 NA NA prediction 0.440923699366506 Functional Gain - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1009634 chr5:1009632 nonsynonymous SNV 0.868 2 19 hm6Am_associated_SNPs_3335 0 0 0 0 2 NKD2 chr5:1009675 5'GT 1009675 Upstream 44bp
1498 chr6 46761193 46761193 1 + G A rs149669155 46761195 + 46761175 46761215 41 TTGCTTTTTGCCCACATAGCAGCTGTACCGGTAAGTCGAGT TTGCTTTTTGCCCACATAACAGCTGTACCGGTAAGTCGAGT < 41bp 0.467109598390202 0.720416700046193 NA NA prediction 0.440833400092387 Functional Gain - MEP1A ENSG00000112818 CDS Human protein_coding chr6:46761195 chr6:46761193 nonsynonymous SNV 0.998 0 19 hm6Am_associated_SNPs_3337 0 0 0 0 1 MEP1A chr6:46761204 5'GT 46761204 Upstream 12bp
1499 chr4 3494525 3494525 1 + G C rs144592743 3494524 + 3494504 3494544 41 CCAGCTCATCCTCAGAGGCCAGTCACTTGGACGTCAGCGCC CCAGCTCATCCTCAGAGGCCACTCACTTGGACGTCAGCGCC < 41bp 0.460186602859864 0.720387551854421 NA NA prediction 0.440775103708842 Functional Gain - DOK7 ENSG00000175920 CDS Human protein_coding chr4:3494524 chr4:3494525 nonsynonymous SNV 0.978 4 22 hm6Am_associated_SNPs_3338 0 0 0 0 1 DOK7 chr4:3494486 3'AG 3494486 Downstream 40bp
1500 chr14 35579122 35579122 1 + G T HNSC 35579124 + 35579104 35579144 41 GTGTCTGGTGTTTGTCCAGCAAAAACCATAAGTTCTTAAGA GTGTCTGGTGTTTGTCCATCAAAAACCATAAGTTCTTAAGA < 41bp 0.311332637441925 0.720359253700747 NA NA prediction 0.440718507401493 Functional Gain - PPP2R3C ENSG00000092020 CDS Human protein_coding chr14:35579124 chr14:35579122 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3339 0 0 0 0 2 PPP2R3C chr14:35579101 3'AG 35579101 Downstream 22bp
1501 chr14 35579122 35579122 1 + G T HNSC 35579124 + 35579104 35579144 41 GTGTCTGGTGTTTGTCCAGCAAAAACCATAAGTTCTTAAGA GTGTCTGGTGTTTGTCCATCAAAAACCATAAGTTCTTAAGA < 41bp 0.311332637441925 0.720359253700747 NA NA prediction 0.440718507401493 Functional Gain - PPP2R3C ENSG00000092020 CDS Human other chr14:35579124 chr14:35579122 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3339 0 0 0 0 2 LOC101927178 chr14:35579166 5'GT 35579166 Upstream 45bp
1502 chr1 2428372 2428372 1 + G T LUAD 2428374 + 2428354 2428394 41 ACCAGCAGCAGCTCTCCCGCATCTACCCCTCCTCCTACCGT ACCAGCAGCAGCTCTCCCTCATCTACCCCTCCTCCTACCGT < 41bp 0.297537720987087 0.720268966507784 NA NA prediction 0.440537933015569 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2428374 chr1:2428372 nonsynonymous SNV 0.992 5 19 hm6Am_associated_SNPs_3346 0 0 0 0 1 PLCH2 chr1:2428449 5'GT 2428449 Upstream 78bp
1503 chr2 169757994 169757994 1 + G C HNSC 169757993 + 169757973 169758013 41 ACTTTGTTTTCAATTTAATCAGACAGTTGGAACCAAGATGA ACTTTGTTTTCAATTTAATCACACAGTTGGAACCAAGATGA < 41bp 0.587396538299672 0.80765261261242 NA NA prediction 0.440512148625495 Functional Gain - G6PC2 ENSG00000152254 CDS Human protein_coding chr2:169757993 chr2:169757994 nonsynonymous SNV 0.998 0 22 hm6Am_associated_SNPs_3347 0 0 0 0 1 G6PC2 chr2:169758059 5'GT 169758059 Upstream 66bp
1504 chr15 25474031 25474031 1 + G A UCEC 25474033 + 25474013 25474053 41 AAACTCTGACCCTTCCTGGCACACTGGTCTCCTGCACTGAG AAACTCTGACCCTTCCTGACACACTGGTCTCCTGCACTGAG < 41bp 0.568066658370829 0.78827700939753 NA NA prediction 0.440420702053402 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25474033 chr15:25474031 . . 0 19 hm6Am_associated_SNPs_3350 0 0 0 2 1 SNHG14 chr15:25474058 5'GT 25474058 Upstream 28bp
1505 chr3 119190284 119190284 1 + G C UCEC 119190286 + 119190266 119190306 41 TGTACCGGGAAAATGACTGCATGTTCCCCTCAAGGTAAGAG TGTACCGGGAAAATGACTCCATGTTCCCCTCAAGGTAAGAG < 41bp 0.415122446401544 0.720209470475996 NA NA prediction 0.440418940951992 Functional Gain - POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119190286 chr3:119190284 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3351 0 0 1 2 1 POGLUT1 chr3:119190299 5'GT 119190299 Upstream 16bp
1506 chr7 123594484 123594484 1 + G C CESC 123594483 + 123594463 123594503 41 ATCGAGTTCGGGAAGCCATCAGAGTTTCCAAAATACCTGAT ATCGAGTTCGGGAAGCCATCACAGTTTCCAAAATACCTGAT < 41bp 0.577268609847843 0.797447471665983 NA NA prediction 0.44035772363628 Functional Gain - SPAM1 ENSG00000106304 CDS Human protein_coding chr7:123594483 chr7:123594484 nonsynonymous SNV 0.121 4 22 hm6Am_associated_SNPs_3353 0 0 0 0 1 SPAM1 chr7:123594578 5'GT 123594578 Upstream 95bp
1507 chr20 36149740 36149740 1 + G A STAD 36149742 + 36149722 36149762 41 ATTCTTGGAACCATGGCGGCAGTGGCGGCGGCCTCGGCTGA ATTCTTGGAACCATGGCGACAGTGGCGGCGGCCTCGGCTGA < 41bp 0.460970127615522 0.720148432157353 NA NA prediction 0.440296864314706 Functional Gain - NNAT ENSG00000053438 CDS Human protein_coding chr20:36149742 chr20:36149740 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_3356 0 0 0 0 1 NNAT chr20:36149805 5'GT 36149805 Upstream 66bp
1508 chr10 88492713 88492713 1 + G A UCEC 88492715 + 88492695 88492735 41 CCCCTGTGCAAGAAGCACGCACACACCATCAACTTGTAGGC CCCCTGTGCAAGAAGCACACACACACCATCAACTTGTAGGC < 41bp 0.475105326135704 0.720029005747874 NA NA prediction 0.440058011495748 Functional Gain - LDB3 ENSG00000122367 CDS Human protein_coding chr10:88492715 chr10:88492713 nonsynonymous SNV 0.764 3 19 hm6Am_associated_SNPs_3362 1 0 0 0 1 LDB3 chr10:88492644 3'AG 88492644 Downstream 70bp
1509 chr14 24621025 24621025 1 + G A COAD 24621027 + 24621007 24621047 41 CGGCTTTTGGCAGTCTACGCACTCCCCAGCTGGGGCCGGGC CGGCTTTTGGCAGTCTACACACTCCCCAGCTGGGGCCGGGC < 41bp 0.459494455675163 0.720012831917424 NA NA prediction 0.440025663834848 Functional Gain - RNF31 ENSG00000092098;ENSG00000259529 CDS Human other chr14:24621027 chr14:24621025 nonsynonymous SNV 0.981 0 19 hm6Am_associated_SNPs_3363 0 0 1 0 1 RNF31 chr14:24620995 3'AG 24620995 Downstream 31bp
1510 chr16 29339933 29339933 1 + G A rs560737761 29339935 + 29339915 29339955 41 GGAGCAAGTCCAGATCACGCAGGACAGCGAGGTGAGTCATC GGAGCAAGTCCAGATCACACAGGACAGCGAGGTGAGTCATC < 41bp 0.472142767763028 0.719986545765324 NA NA prediction 0.439973091530648 Functional Gain - SNX29P2 ENSG00000198106;ENSG00000260413 ncRNA_exonic Human other chr16:29339935 chr16:29339933 . . 0 19 hm6Am_associated_SNPs_3364 0 0 0 0 2 SNX29P2 chr16:29339883 3'AG 29339883 Downstream 51bp
1511 chr16 29339933 29339933 1 + G A rs560737761 29339935 + 29339915 29339955 41 GGAGCAAGTCCAGATCACGCAGGACAGCGAGGTGAGTCATC GGAGCAAGTCCAGATCACACAGGACAGCGAGGTGAGTCATC < 41bp 0.472142767763028 0.719986545765324 NA NA prediction 0.439973091530648 Functional Gain - SNX29P2 ENSG00000198106;ENSG00000260413 ncRNA_exonic Human other chr16:29339935 chr16:29339933 . . 0 19 hm6Am_associated_SNPs_3364 0 0 0 0 2 SNX29P2 chr16:29339945 5'GT 29339945 Upstream 13bp
1512 chr11 65631543 65631543 1 + G A rs560971686 65631545 + 65631525 65631565 41 CCACAGGCCCATCCAGGCGCACAGTAGGAAGCCAGGTACCT CCACAGGCCCATCCAGGCACACAGTAGGAAGCCAGGTACCT < 41bp 0.571914049661431 0.791709747218689 NA NA prediction 0.439591395114515 Functional Gain - MUS81 ENSG00000172732 intronic Human protein_coding chr11:65631545 chr11:65631543 . . 0 19 hm6Am_associated_SNPs_3375 0 0 0 0 1 MUS81 chr11:65631559 5'GT 65631559 Upstream 17bp
1513 chr2 30682536 30682536 1 + G A STAD 30682538 + 30682518 30682558 41 CCATGGTCAATTAACGAGGCAGTTTCTAGCTACTGCACGTA CCATGGTCAATTAACGAGACAGTTTCTAGCTACTGCACGTA < 41bp 0.484638658991139 0.719790564972346 NA NA prediction 0.439581129944693 Functional Gain - LCLAT1 ENSG00000172954 CDS Human protein_coding chr2:30682538 chr2:30682536 nonsynonymous SNV 0.015 0 19 hm6Am_associated_SNPs_3376 0 0 1 0 1 LCLAT1 chr2:30682588 5'GT 30682588 Upstream 53bp
1514 chr10 27552121 27552121 1 + G A COAD 27552123 + 27552103 27552143 41 ACAAGTTTGGCGCCCTCCGCATTTGAATCAGGTTATGTTAG ACAAGTTTGGCGCCCTCCACATTTGAATCAGGTTATGTTAG < 41bp 0.474821843623506 0.7195800870571 NA NA prediction 0.439160174114199 Functional Gain - ARMC4P1 ENSG00000238021 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:27552123 chr10:27552121 . . 0 19 hm6Am_associated_SNPs_3380 0 0 0 0 1 ARMC4P1 chr10:27552143 5'GT 27552143 Upstream 23bp
1515 chr1 228246697 228246697 1 + G C LUSC 228246696 + 228246676 228246716 41 GTGCCCCGCAGGCCATCGCCAGCCACATGCACCTCAAGTGC GTGCCCCGCAGGCCATCGCCACCCACATGCACCTCAAGTGC < 41bp 0.472859830779731 0.719443086300323 NA NA prediction 0.438886172600645 Functional Gain - WNT3A ENSG00000154342 CDS Human protein_coding chr1:228246696 chr1:228246697 nonsynonymous SNV 0.993 0 22 hm6Am_associated_SNPs_3385 0 0 0 0 1 WNT3A chr1:228246687 3'AG 228246687 Downstream 11bp
1516 chr2 228678700 228678700 1 + G C CESC 228678699 + 228678679 228678719 41 CTCCACCTCTGCGGCGAATCAGAAGGTAAGTGTCGCTCTTT CTCCACCTCTGCGGCGAATCACAAGGTAAGTGTCGCTCTTT < 41bp 0.503144278881885 0.722577507395137 NA NA prediction 0.438866457026503 Functional Gain - CCL20 ENSG00000115009 CDS Human protein_coding chr2:228678699 chr2:228678700 nonsynonymous SNV 0.800 0 22 hm6Am_associated_SNPs_3386 0 0 1 0 1 CCL20 chr2:228678703 5'GT 228678703 Upstream 4bp
1517 chr1 22351861 22351861 1 + G A rs28754826 22351863 + 22351843 22351883 41 GAATGTATCCAAAACTCCGCACGGTAAGGACTGAGGACGGT GAATGTATCCAAAACTCCACACGGTAAGGACTGAGGACGGT < 41bp 0.552722071068511 0.772138060600912 NA NA prediction 0.438831979064803 Functional Gain - LINC00339 ENSG00000218510 ncRNA_exonic Human lincRNA chr1:22351863 chr1:22351861 . . 0 19 hm6Am_associated_SNPs_3387 0 0 0 0 1 LINC00339 chr1:22351865 5'GT 22351865 Upstream 5bp
1518 chr17 43893833 43893833 1 + G A HNSC 43893835 + 43893815 43893855 41 GTCTCTGCCCCCAGGACTGCAGTGCAACGCATCCGTGGACC GTCTCTGCCCCCAGGACTACAGTGCAACGCATCCGTGGACC < 41bp 0.502764207275451 0.721987828049899 NA NA prediction 0.438447241548895 Functional Gain - CRHR1 ENSG00000120088 CDS Human protein_coding chr17:43893835 chr17:43893833 synonymous SNV . 0 19 hm6Am_associated_SNPs_3393 0 0 0 1 1 CRHR1 chr17:43893829 3'AG 43893829 Downstream 5bp
1519 chr19 41518309 41518309 1 + G C BLCA 41518308 + 41518288 41518328 41 GGCAGTCATCTATGAGATTCAGAGATTTTCCGACCTTCTCC GGCAGTCATCTATGAGATTCACAGATTTTCCGACCTTCTCC < 41bp 0.441461709864344 0.719197941903437 NA NA prediction 0.438395883806875 Functional Gain - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41518308 chr19:41518309 nonsynonymous SNV 0.984 4 22 hm6Am_associated_SNPs_3396 0 0 0 0 1 CYP2B6 chr19:41518390 5'GT 41518390 Upstream 82bp
1520 chr17 1943869 1943869 1 + G A UCEC 1943871 + 1943851 1943891 41 TCTCTGAGATCTTCCCCAGCAAGCTTAGCCTACTTCCTGAG TCTCTGAGATCTTCCCCAACAAGCTTAGCCTACTTCCTGAG < 41bp 0.460067863582373 0.719184382213978 NA NA prediction 0.438368764427956 Functional Gain - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1943871 chr17:1943869 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_3398 0 0 1 0 2 DPH1 chr17:1943799 3'AG 1943799 Downstream 71bp
1521 chr17 1943869 1943869 1 + G A UCEC 1943871 + 1943851 1943891 41 TCTCTGAGATCTTCCCCAGCAAGCTTAGCCTACTTCCTGAG TCTCTGAGATCTTCCCCAACAAGCTTAGCCTACTTCCTGAG < 41bp 0.460067863582373 0.719184382213978 NA NA prediction 0.438368764427956 Functional Gain - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1943871 chr17:1943869 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_3398 0 0 1 0 2 DPH1 chr17:1943899 5'GT 1943899 Upstream 31bp
1522 chr12 58335598 58335598 1 + G A STAD 58335600 + 58335580 58335620 41 GGCCCAGGGGAATCCCCAGCAAGGGTTCTTCTCCAGCTTCT GGCCCAGGGGAATCCCCAACAAGGGTTCTTCTCCAGCTTCT < 41bp 0.60642183185114 0.825585673789149 NA NA prediction 0.438327683876018 Functional Gain - ATP23 ENSG00000166896 CDS Human protein_coding chr12:58335600 chr12:58335598 synonymous SNV . 0 19 hm6Am_associated_SNPs_3400 0 0 1 0 1 ATP23 chr12:58335671 5'GT 58335671 Upstream 74bp
1523 chr14 31091601 31091601 1 + G C CESC 31091600 + 31091580 31091620 41 AGCCAGTATTCGGGAAAGGCAGACAGGTACTGACTTATTCT AGCCAGTATTCGGGAAAGGCACACAGGTACTGACTTATTCT < 41bp 0.525067040901229 0.744221336070713 NA NA prediction 0.438308590338967 Functional Gain - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31091600 chr14:31091601 nonsynonymous SNV 0.986 4 22 hm6Am_associated_SNPs_3401 0 0 1 0 2 SCFD1 chr14:31091605 5'GT 31091605 Upstream 5bp
1524 chr14 31091601 31091601 1 + G C CESC 31091600 + 31091580 31091620 41 AGCCAGTATTCGGGAAAGGCAGACAGGTACTGACTTATTCT AGCCAGTATTCGGGAAAGGCACACAGGTACTGACTTATTCT < 41bp 0.525067040901229 0.744221336070713 NA NA prediction 0.438308590338967 Functional Gain - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31091600 chr14:31091601 nonsynonymous SNV 0.986 4 22 hm6Am_associated_SNPs_3401 0 0 1 0 2 SCFD1 chr14:31091668 5'GT 31091668 Upstream 68bp
1525 chr8 136246699 136246699 1 + G A rs180885131 136246701 + 136246681 136246721 41 AGGAGAATGTGGAACTCCGCACCCGCTTTCTCAGAACAGAG AGGAGAATGTGGAACTCCACACCCGCTTTCTCAGAACAGAG < 41bp 0.568572292856523 0.787674929946575 NA NA prediction 0.438205274180102 Functional Gain - LINC01591 ENSG00000254083 ncRNA_exonic Human lincRNA chr8:136246701 chr8:136246699 . . 0 19 hm6Am_associated_SNPs_3402 0 0 0 0 1 LINC01591 chr8:136246757 5'GT 136246757 Upstream 59bp
1526 chr14 24517419 24517419 1 + G C LUAD 24517418 + 24517398 24517438 41 ATGATAAAGGCAGTGGTGCCAGAAATGGAGAAACGAGGGTA ATGATAAAGGCAGTGGTGCCACAAATGGAGAAACGAGGGTA < 41bp 0.516162924684299 0.735254746793856 NA NA prediction 0.438183644219114 Functional Gain - DHRS4L1 ENSG00000225766 ncRNA_exonic Human processed_transcript chr14:24517418 chr14:24517419 . . 0 22 hm6Am_associated_SNPs_3405 0 0 0 2 2 DHRS4L1 chr14:24517365 3'AG 24517365 Downstream 55bp
1527 chr14 24517419 24517419 1 + G C LUAD 24517418 + 24517398 24517438 41 ATGATAAAGGCAGTGGTGCCAGAAATGGAGAAACGAGGGTA ATGATAAAGGCAGTGGTGCCACAAATGGAGAAACGAGGGTA < 41bp 0.516162924684299 0.735254746793856 NA NA prediction 0.438183644219114 Functional Gain - DHRS4L1 ENSG00000225766 ncRNA_exonic Human processed_transcript chr14:24517418 chr14:24517419 . . 0 22 hm6Am_associated_SNPs_3405 0 0 0 2 2 DHRS4L1 chr14:24517460 5'GT 24517460 Upstream 42bp
1528 chr5 306807 306807 1 + G A rs111451538 306809 + 306789 306829 41 ACTGGCAGAACGTCTTCCGCACGTACGACCGGGACAACTCC ACTGGCAGAACGTCTTCCACACGTACGACCGGGACAACTCC < 41bp 0.592283149345924 0.811373711845041 NA NA prediction 0.438181124998235 Functional Gain - PDCD6 ENSG00000249915 CDS Human protein_coding chr5:306809 chr5:306807 nonsynonymous SNV 0.943 2 19 hm6Am_associated_SNPs_3406 0 0 1 0 3 PDCD6 chr5:306717 3'AG 306717 Downstream 91bp
1529 chr5 306807 306807 1 + G A rs111451538 306809 + 306789 306829 41 ACTGGCAGAACGTCTTCCGCACGTACGACCGGGACAACTCC ACTGGCAGAACGTCTTCCACACGTACGACCGGGACAACTCC < 41bp 0.592283149345924 0.811373711845041 NA NA prediction 0.438181124998235 Functional Gain - PDCD6 ENSG00000249915 CDS Human protein_coding chr5:306809 chr5:306807 nonsynonymous SNV 0.943 2 19 hm6Am_associated_SNPs_3406 0 0 1 0 3 PDCD6 chr5:306869 5'GT 306869 Upstream 63bp
1530 chr5 306807 306807 1 + G A rs111451538 306809 + 306789 306829 41 ACTGGCAGAACGTCTTCCGCACGTACGACCGGGACAACTCC ACTGGCAGAACGTCTTCCACACGTACGACCGGGACAACTCC < 41bp 0.592283149345924 0.811373711845041 NA NA prediction 0.438181124998235 Functional Gain - PDCD6 ENSG00000249915 CDS Human protein_coding chr5:306809 chr5:306807 nonsynonymous SNV 0.943 2 19 hm6Am_associated_SNPs_3406 0 0 1 0 3 PDCD6 chr5:306875 5'GT 306875 Upstream 69bp
1531 chr12 72332806 72332806 1 + G A UCEC 72332808 + 72332788 72332828 41 TTTTCCAGTAAATACTGGGCACGGAGAGGGTTTTCCCTGGA TTTTCCAGTAAATACTGGACACGGAGAGGGTTTTCCCTGGA < 41bp 0.586719207934287 0.80579681116688 NA NA prediction 0.438155206465186 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72332808 chr12:72332806 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_3407 0 0 0 0 1 TPH2 chr12:72332871 5'GT 72332871 Upstream 66bp
1532 chr1 33747278 33747278 1 + G A UCEC 33747280 + 33747260 33747300 41 CAAGCCCCACAAGTGCCCGCACTGCTCCAAGTCCTTTGCCA CAAGCCCCACAAGTGCCCACACTGCTCCAAGTCCTTTGCCA < 41bp 0.464308100257136 0.719074513091497 NA NA prediction 0.438149026182994 Functional Gain - ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33747280 chr1:33747278 synonymous SNV . 0 19 hm6Am_associated_SNPs_3408 0 0 0 0 1 ZNF362 chr1:33747188 3'AG 33747188 Downstream 91bp
1533 chr2 136433011 136433011 1 + G C BLCA 136433010 + 136432990 136433030 41 ACCCAACAGCATTGGAAATCAGATTCAAGGAGTGGTCATCC ACCCAACAGCATTGGAAATCACATTCAAGGAGTGGTCATCC < 41bp 0.455901336674636 0.718969673485037 NA NA prediction 0.437939346970074 Functional Gain - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136433010 chr2:136433011 nonsynonymous SNV 0.997 0 22 hm6Am_associated_SNPs_3413 0 0 1 0 1 R3HDM1 chr2:136433056 5'GT 136433056 Upstream 46bp
1534 chrX 133988192 133988192 1 + G A STAD 133988194 + 133988174 133988214 41 ATTCGTCAGCTGAAATCGGCACTGTCACAAACTCTCCTGTG ATTCGTCAGCTGAAATCGACACTGTCACAAACTCTCCTGTG < 41bp 0.595246742229381 0.814207552171901 NA NA prediction 0.43792161988504 Functional Gain - FAM122C ENSG00000156500 CDS Human protein_coding chrX:133988194 chrX:133988192 nonsynonymous SNV 0.001 1 19 hm6Am_associated_SNPs_3414 0 0 0 2 1 FAM122C chrX:133988121 3'AG 133988121 Downstream 72bp
1535 chr7 99688878 99688878 1 + G T PAAD 99688880 + 99688860 99688900 41 GTGGCTGAACACCTGATAGCACAGCACAGCGCCATCAAGAT GTGGCTGAACACCTGATATCACAGCACAGCGCCATCAAGAT < 41bp 0.293551951436338 0.718957154120144 NA NA prediction 0.437914308240289 Functional Gain - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688880 chr7:99688878 nonsynonymous SNV 0.997 1 19 hm6Am_associated_SNPs_3415 0 0 1 0 2 COPS6 chr7:99688861 3'AG 99688861 Downstream 18bp
1536 chr7 99688878 99688878 1 + G T PAAD 99688880 + 99688860 99688900 41 GTGGCTGAACACCTGATAGCACAGCACAGCGCCATCAAGAT GTGGCTGAACACCTGATATCACAGCACAGCGCCATCAAGAT < 41bp 0.293551951436338 0.718957154120144 NA NA prediction 0.437914308240289 Functional Gain - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688880 chr7:99688878 nonsynonymous SNV 0.997 1 19 hm6Am_associated_SNPs_3415 0 0 1 0 2 COPS6 chr7:99688953 5'GT 99688953 Upstream 76bp
1537 chr8 37553689 37553689 1 + G A rs139403834 37553691 + 37553671 37553711 41 TCACACCGGTCACCTCCTGCACCCGGAGTACCTGCAGCCGC TCACACCGGTCACCTCCTACACCCGGAGTACCTGCAGCCGC < 41bp 0.585632906787611 0.804503656762071 NA NA prediction 0.437741499948919 Functional Gain - ZNF703 ENSG00000183779 CDS Human protein_coding chr8:37553691 chr8:37553689 synonymous SNV . 0 19 hm6Am_associated_SNPs_3417 0 0 1 0 1 ZNF703 chr8:37553740 5'GT 37553740 Upstream 52bp
1538 chr21 17566885 17566885 1 + G A BLCA 17566887 + 17566867 17566907 41 GGTGTTGGACAACCATAGGCAAAACTGAAATGGAACAGGGG GGTGTTGGACAACCATAGACAAAACTGAAATGGAACAGGGG < 41bp 0.489672719861347 0.718868613663236 NA NA prediction 0.437737227326472 Functional Gain - MIR99AHG ENSG00000215386 ncRNA_exonic Human lincRNA chr21:17566887 chr21:17566885 . . 0 19 hm6Am_associated_SNPs_3418 0 0 0 0 1 MIR99AHG chr21:17566953 5'GT 17566953 Upstream 69bp
1539 chr2 204003429 204003429 1 + G C LGG 204003428 + 204003408 204003448 41 GGTAAAACTCTCTCAAATTCAGATCCAGTTGCTTCTAGGAT GGTAAAACTCTCTCAAATTCACATCCAGTTGCTTCTAGGAT < 41bp 0.462838591837987 0.718859502834832 NA NA prediction 0.437719005669664 Functional Gain - NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204003428 chr2:204003429 nonsynonymous SNV 0.999 0 22 hm6Am_associated_SNPs_3420 0 0 0 0 2 NBEAL1 chr2:204003343 3'AG 204003343 Downstream 87bp
1540 chr2 204003429 204003429 1 + G C LGG 204003428 + 204003408 204003448 41 GGTAAAACTCTCTCAAATTCAGATCCAGTTGCTTCTAGGAT GGTAAAACTCTCTCAAATTCACATCCAGTTGCTTCTAGGAT < 41bp 0.462838591837987 0.718859502834832 NA NA prediction 0.437719005669664 Functional Gain - NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204003428 chr2:204003429 nonsynonymous SNV 0.999 0 22 hm6Am_associated_SNPs_3420 0 0 0 0 2 NBEAL1 chr2:204003471 5'GT 204003471 Upstream 43bp
1541 chr1 206972263 206972263 1 + G A STAD 206972265 + 206972245 206972285 41 CACTGAGGGAGCGTTTCCGCACAGATCTGCGTGTTCCTTAC CACTGAGGGAGCGTTTCCACACAGATCTGCGTGTTCCTTAC < 41bp 0.59128990874215 0.810137973173668 NA NA prediction 0.437696128863034 Functional Gain - IL19 ENSG00000142224 CDS Human protein_coding chr1:206972265 chr1:206972263 synonymous SNV . 0 19 hm6Am_associated_SNPs_3422 0 0 0 0 1 IL19 chr1:206972351 5'GT 206972351 Upstream 89bp
1542 chr16 55803916 55803916 1 + G A GBM 55803918 + 55803898 55803938 41 GGGCTGATGGTGGGTGCGGCATCAACCTACGATGGGCTGGC GGGCTGATGGTGGGTGCGACATCAACCTACGATGGGCTGGC < 41bp 0.595743210687172 0.814385919056723 NA NA prediction 0.437285416739102 Functional Gain - CES1P1 ENSG00000228695 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:55803918 chr16:55803916 . . 0 19 hm6Am_associated_SNPs_3427 0 0 0 0 2 CES1P1 chr16:55803874 3'AG 55803874 Downstream 43bp
1543 chr16 55803916 55803916 1 + G A GBM 55803918 + 55803898 55803938 41 GGGCTGATGGTGGGTGCGGCATCAACCTACGATGGGCTGGC GGGCTGATGGTGGGTGCGACATCAACCTACGATGGGCTGGC < 41bp 0.595743210687172 0.814385919056723 NA NA prediction 0.437285416739102 Functional Gain - CES1P1 ENSG00000228695 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:55803918 chr16:55803916 . . 0 19 hm6Am_associated_SNPs_3427 0 0 0 0 2 CES1P1 chr16:55804007 5'GT 55804007 Upstream 92bp
1544 chrX 140993238 140993238 1 + G C BLCA 140993237 + 140993217 140993257 41 TGGGATGCCGAGTCTTCTCCAGAGTTCCTCTGAGAGTCCTC TGGGATGCCGAGTCTTCTCCACAGTTCCTCTGAGAGTCCTC < 41bp 0.559502423272361 0.778130925262865 NA NA prediction 0.437257003981007 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140993237 chrX:140993238 nonsynonymous SNV 0.015 1 22 hm6Am_associated_SNPs_3428 0 0 1 0 2 MAGEC1 chrX:140993195 3'AG 140993195 Downstream 44bp
1545 chrX 140993238 140993238 1 + G C BLCA 140993237 + 140993217 140993257 41 TGGGATGCCGAGTCTTCTCCAGAGTTCCTCTGAGAGTCCTC TGGGATGCCGAGTCTTCTCCACAGTTCCTCTGAGAGTCCTC < 41bp 0.559502423272361 0.778130925262865 NA NA prediction 0.437257003981007 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140993237 chrX:140993238 nonsynonymous SNV 0.015 1 22 hm6Am_associated_SNPs_3428 0 0 1 0 2 MAGEC1 chrX:140993333 5'GT 140993333 Upstream 96bp
1546 chr16 19041646 19041646 1 + G T STAD 19041648 + 19041628 19041668 41 CCCTGGCGTATTTGTTAAGCACAATCGCCTCCCTGGCCCTG CCCTGGCGTATTTGTTAATCACAATCGCCTCCCTGGCCCTG < 41bp 0.292021667817694 0.718570751795277 NA NA prediction 0.437141503590555 Functional Gain - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19041648 chr16:19041646 nonsynonymous SNV 0.952 1 19 hm6Am_associated_SNPs_3432 0 0 0 0 1 TMC7 chr16:19041691 5'GT 19041691 Upstream 46bp
1547 chr7 99036780 99036780 1 + G A LUSC 99036782 + 99036762 99036802 41 GGAGCAGCAGCTGGGGGCGCAGCCGCTGCCCTTCCCCGGCA GGAGCAGCAGCTGGGGGCACAGCCGCTGCCCTTCCCCGGCA < 41bp 0.459466206031439 0.718534042931827 NA NA prediction 0.437068085863653 Functional Gain - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99036782 chr7:99036780 synonymous SNV . 0 19 hm6Am_associated_SNPs_3435 0 0 1 0 1 CPSF4 chr7:99036808 5'GT 99036808 Upstream 29bp
1548 chr3 147657829 147657829 1 + G A UCEC 147657831 + 147657811 147657851 41 AGGCGACAGCGTCGCTGAGCACCAACTTCTATTCCACGGAG AGGCGACAGCGTCGCTGAACACCAACTTCTATTCCACGGAG < 41bp 0.579299391329977 0.797785127112326 NA NA prediction 0.436971471564698 Functional Gain - LOC440982;LINC02032 ENSG00000239922 ncRNA_exonic Human lincRNA chr3:147657831 chr3:147657829 . . 0 19 hm6Am_associated_SNPs_3439 0 0 0 0 1 LOC440982;LINC02032 chr3:147657903 5'GT 147657903 Upstream 75bp
1549 chrX 49019268 49019268 1 + G A COAD 49019270 + 49019250 49019290 41 CCGCGAACCCTAAGGGGAGCAGAGGAAGTACAGGGATTGGG CCGCGAACCCTAAGGGGAACAGAGGAAGTACAGGGATTGGG < 41bp 0.602481172080689 0.82095809901865 NA NA prediction 0.436953853875923 Functional Gain - MAGIX ENSG00000017621 CDS Human other chrX:49019270 chrX:49019268 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_3440 0 0 0 0 1 MAGIX chrX:49019276 5'GT 49019276 Upstream 9bp
1550 chr15 90245001 90245001 1 + G C BLCA 90245000 + 90244980 90245020 41 GTCATTCCCAAGAGGAAGTCAGACCCAGAAAATAAAGCACC GTCATTCCCAAGAGGAAGTCACACCCAGAAAATAAAGCACC < 41bp 0.478419263807759 0.718462254785497 NA NA prediction 0.436924509570995 Functional Gain - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90245000 chr15:90245001 nonsynonymous SNV 0.000 0 22 hm6Am_associated_SNPs_3442 0 0 0 0 1 WDR93 chr15:90244938 3'AG 90244938 Downstream 64bp
1551 chr12 121177152 121177152 1 + G A SKCM 121177154 + 121177134 121177174 41 AGAGATGCCGGCAGAGCGGCACTACCGCGACGCCCGCATCA AGAGATGCCGGCAGAGCGACACTACCGCGACGCCCGCATCA < 41bp 0.579294489408422 0.797720740806208 NA NA prediction 0.436852502795573 Functional Gain - ACADS ENSG00000122971 CDS Human protein_coding chr12:121177154 chr12:121177152 synonymous SNV . 0 19 hm6Am_associated_SNPs_3443 0 0 0 0 1 ACADS chr12:121177099 3'AG 121177099 Downstream 54bp
1552 chr2 27662685 27662685 1 + G C BLCA 27662684 + 27662664 27662704 41 CTGCTCGCAGACCAACAGCCAGAGAACTTCTGTTCCACCCA CTGCTCGCAGACCAACAGCCACAGAACTTCTGTTCCACCCA < 41bp 0.43893977793723 0.718418389179015 NA NA prediction 0.436836778358031 Functional Gain - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27662684 chr2:27662685 nonsynonymous SNV 1.000 2 22 hm6Am_associated_SNPs_3444 0 0 1 0 2 NRBP1 chr2:27662633 3'AG 27662633 Downstream 53bp
1553 chr2 27662685 27662685 1 + G C BLCA 27662684 + 27662664 27662704 41 CTGCTCGCAGACCAACAGCCAGAGAACTTCTGTTCCACCCA CTGCTCGCAGACCAACAGCCACAGAACTTCTGTTCCACCCA < 41bp 0.43893977793723 0.718418389179015 NA NA prediction 0.436836778358031 Functional Gain - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27662684 chr2:27662685 nonsynonymous SNV 1.000 2 22 hm6Am_associated_SNPs_3444 0 0 1 0 2 NRBP1 chr2:27662765 5'GT 27662765 Upstream 81bp
1554 chr7 150498683 150498683 1 + G A COAD 150498685 + 150498665 150498705 41 GGCCCCGGAGGCCCCACAGCACACCCACATCGATGTGCACA GGCCCCGGAGGCCCCACAACACACCCACATCGATGTGCACA < 41bp 0.45470601578531 0.718398923421285 NA NA prediction 0.43679784684257 Functional Gain - TMEM176A ENSG00000002933 CDS Human protein_coding chr7:150498685 chr7:150498683 synonymous SNV . 0 19 hm6Am_associated_SNPs_3447 0 0 0 0 1 TMEM176A chr7:150498624 3'AG 150498624 Downstream 60bp
1555 chr14 52433361 52433361 1 + G C BLCA 52433360 + 52433340 52433380 41 CTGACCCCTGTTCCGGCTTCAGAAAACCCGTTTAGGGAGAA CTGACCCCTGTTCCGGCTTCACAAAACCCGTTTAGGGAGAA < 41bp 0.461828707836589 0.718323685467913 NA NA prediction 0.436647370935827 Functional Gain - GNG2 ENSG00000186469 CDS Human protein_coding chr14:52433360 chr14:52433361 nonsynonymous SNV 0.998 3 22 hm6Am_associated_SNPs_3450 0 0 0 0 2 GNG2 chr14:52433277 3'AG 52433277 Downstream 85bp
1556 chr14 52433361 52433361 1 + G C BLCA 52433360 + 52433340 52433380 41 CTGACCCCTGTTCCGGCTTCAGAAAACCCGTTTAGGGAGAA CTGACCCCTGTTCCGGCTTCACAAAACCCGTTTAGGGAGAA < 41bp 0.461828707836589 0.718323685467913 NA NA prediction 0.436647370935827 Functional Gain - GNG2 ENSG00000186469 CDS Human protein_coding chr14:52433360 chr14:52433361 nonsynonymous SNV 0.998 3 22 hm6Am_associated_SNPs_3450 0 0 0 0 2 GNG2 chr14:52433317 3'AG 52433317 Downstream 45bp
1557 chr10 124145604 124145604 1 + G C rs538623640 124145606 + 124145586 124145626 41 AAGTTGCTATGTCATTTTGCATTTCCACCAGCAATATATGA AAGTTGCTATGTCATTTTCCATTTCCACCAGCAATATATGA < 41bp 0.673198887880883 0.891443412506385 NA NA prediction 0.436489049251003 Functional Gain - PLEKHA1 ENSG00000107679 UTR5 Human protein_coding chr10:124145606 chr10:124145604 . . 0 19 hm6Am_associated_SNPs_3454 0 0 0 0 1 PLEKHA1 chr10:124145703 5'GT 124145703 Upstream 100bp
1558 chr7 99700543 99700543 1 + G A STAD 99700545 + 99700525 99700565 41 GCGAGGGGACCATCTCCCGCAATGTGGCTCTGGTATACGAA GCGAGGGGACCATCTCCCACAATGTGGCTCTGGTATACGAA < 41bp 0.608401070224847 0.826626736540636 NA NA prediction 0.436451332631577 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99700545 chr7:99700543 nonsynonymous SNV 0.972 2 19 hm6Am_associated_SNPs_3455 0 0 0 0 3 AP4M1 chr7:99700487 3'AG 99700487 Downstream 57bp
1559 chr7 99700543 99700543 1 + G A STAD 99700545 + 99700525 99700565 41 GCGAGGGGACCATCTCCCGCAATGTGGCTCTGGTATACGAA GCGAGGGGACCATCTCCCACAATGTGGCTCTGGTATACGAA < 41bp 0.608401070224847 0.826626736540636 NA NA prediction 0.436451332631577 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99700545 chr7:99700543 nonsynonymous SNV 0.972 2 19 hm6Am_associated_SNPs_3455 0 0 0 0 3 AP4M1 chr7:99700556 5'GT 99700556 Upstream 14bp
1560 chr7 99700543 99700543 1 + G A STAD 99700545 + 99700525 99700565 41 GCGAGGGGACCATCTCCCGCAATGTGGCTCTGGTATACGAA GCGAGGGGACCATCTCCCACAATGTGGCTCTGGTATACGAA < 41bp 0.608401070224847 0.826626736540636 NA NA prediction 0.436451332631577 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99700545 chr7:99700543 nonsynonymous SNV 0.972 2 19 hm6Am_associated_SNPs_3455 0 0 0 0 3 AP4M1 chr7:99700583 5'GT 99700583 Upstream 41bp
1561 chr5 94936613 94936613 1 + G C BRCA 94936612 + 94936592 94936632 41 TCTTTGTTGCCGTTATCATCAGAAACATTTAAGAATGAACA TCTTTGTTGCCGTTATCATCACAAACATTTAAGAATGAACA < 41bp 0.456093398029989 0.718139836981043 NA NA prediction 0.436279673962086 Functional Gain - ARSK ENSG00000164291 CDS Human protein_coding chr5:94936612 chr5:94936613 nonsynonymous SNV 0.227 1 22 hm6Am_associated_SNPs_3457 0 0 0 0 1 ARSK chr5:94936551 3'AG 94936551 Downstream 63bp
1562 chr4 156710980 156710980 1 + G C HNSC 156710979 + 156710959 156710999 41 CTCATTTTGCACTACTACTCAGAGAGAGAAGGACTTCAGGA CTCATTTTGCACTACTACTCACAGAGAGAAGGACTTCAGGA < 41bp 0.457374645092676 0.718134946020789 NA NA prediction 0.436269892041579 Functional Gain - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156710979 chr4:156710980 nonsynonymous SNV 0.992 4 22 hm6Am_associated_SNPs_3458 0 0 1 0 1 GUCY1B3 chr4:156711063 5'GT 156711063 Upstream 84bp
1563 chr1 11848738 11848738 1 + G A CESC 11848740 + 11848720 11848760 41 GCACCTGAGATGGGCCTGGCAGACGTGGTGGCAGCGGATCC GCACCTGAGATGGGCCTGACAGACGTGGTGGCAGCGGATCC < 41bp 0.60432144499564 0.822455614932102 NA NA prediction 0.436268339872923 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11848740 chr1:11848738 nonsynonymous SNV 0.006 0 19 hm6Am_associated_SNPs_3459 0 0 0 0 2 C1orf167 chr1:11848709 3'AG 11848709 Downstream 30bp
1564 chr1 11848738 11848738 1 + G A CESC 11848740 + 11848720 11848760 41 GCACCTGAGATGGGCCTGGCAGACGTGGTGGCAGCGGATCC GCACCTGAGATGGGCCTGACAGACGTGGTGGCAGCGGATCC < 41bp 0.60432144499564 0.822455614932102 NA NA prediction 0.436268339872923 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11848740 chr1:11848738 nonsynonymous SNV 0.006 0 19 hm6Am_associated_SNPs_3459 0 0 0 0 2 C1orf167 chr1:11848803 5'GT 11848803 Upstream 66bp
1565 chr1 151993674 151993674 1 + G A COAD 151993676 + 151993656 151993696 41 GTCCTAGTTCACTCTCAGGCACGAGAGCTGGCCTGGTTAAG GTCCTAGTTCACTCTCAGACACGAGAGCTGGCCTGGTTAAG < 41bp 0.478368034707408 0.718077408763163 NA NA prediction 0.436154817526326 Functional Gain - NBPF18P ENSG00000229021;ENSG00000240667 ncRNA_exonic Human other chr1:151993676 chr1:151993674 . . 0 19 hm6Am_associated_SNPs_3462 0 0 0 0 1 NBPF18P chr1:151993646 3'AG 151993646 Downstream 29bp
1566 chr10 118354358 118354358 1 + G C BLCA 118354357 + 118354337 118354377 41 GGTGGGCGCCCAGGTGGCCCAGATGCTCGACATCCTCTTGG GGTGGGCGCCCAGGTGGCCCACATGCTCGACATCCTCTTGG < 41bp 0.464851195144745 0.718039031202846 NA NA prediction 0.436078062405691 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118354357 chr10:118354358 nonsynonymous SNV 0.869 1 22 hm6Am_associated_SNPs_3465 0 0 0 0 1 PNLIPRP1 chr10:118354376 5'GT 118354376 Upstream 19bp
1567 chr3 10251288 10251288 1 + G C rs56053222 10251287 + 10251267 10251307 41 TTCCAGGGTCCTCTCCAGCCAGAGCCCACCAGCCGGCCTTT TTCCAGGGTCCTCTCCAGCCACAGCCCACCAGCCGGCCTTT < 41bp 0.573536244760921 0.79128308063054 NA NA prediction 0.435493671739239 Functional Gain - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10251287 chr3:10251288 nonsynonymous SNV 0.002 0 22 hm6Am_associated_SNPs_3472 0 0 0 0 1 IRAK2 chr3:10251376 5'GT 10251376 Upstream 89bp
1568 chr20 36355722 36355722 1 + G A rs6122927 36355724 + 36355704 36355744 41 GGGCATGGATGGAGACACGCACACACACAGGCAATAGGCCT GGGCATGGATGGAGACACACACACACACAGGCAATAGGCCT < 41bp 0.584768898928429 0.802489571574338 NA NA prediction 0.435441345291817 Functional Gain - CTNNBL1 ENSG00000132792 UTR5 Human protein_coding chr20:36355724 chr20:36355722 . . 0 19 hm6Am_associated_SNPs_3475 0 0 0 0 2 CTNNBL1 chr20:36355704 3'AG 36355704 Downstream 19bp
1569 chr20 36355722 36355722 1 + G A rs6122927 36355724 + 36355704 36355744 41 GGGCATGGATGGAGACACGCACACACACAGGCAATAGGCCT GGGCATGGATGGAGACACACACACACACAGGCAATAGGCCT < 41bp 0.584768898928429 0.802489571574338 NA NA prediction 0.435441345291817 Functional Gain - CTNNBL1 ENSG00000132792 UTR5 Human protein_coding chr20:36355724 chr20:36355722 . . 0 19 hm6Am_associated_SNPs_3475 0 0 0 0 2 CTNNBL1 chr20:36355804 5'GT 36355804 Upstream 83bp
1570 chr8 68864748 68864748 1 + G A STAD 68864750 + 68864730 68864770 41 CCGAGCGGGACTATGTGGGCACGCTGGAGTTCCTGGTGTCG CCGAGCGGGACTATGTGGACACGCTGGAGTTCCTGGTGTCG < 41bp 0.460844079842149 0.717676721664937 NA NA prediction 0.435353443329873 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68864750 chr8:68864748 nonsynonymous SNV 0.998 3 19 hm6Am_associated_SNPs_3478 0 0 0 0 1 PREX2 chr8:68864770 5'GT 68864770 Upstream 23bp
1571 chr14 75359643 75359643 1 + G C BLCA 75359642 + 75359622 75359662 41 TGCAGCACCCATACCCACTCAGATGCCACCGGTGCCCTCGC TGCAGCACCCATACCCACTCACATGCCACCGGTGCCCTCGC < 41bp 0.605534335837265 0.823079131500752 NA NA prediction 0.435089591326973 Functional Gain - DLST ENSG00000119689 CDS Human protein_coding chr14:75359642 chr14:75359643 nonsynonymous SNV 0.988 0 22 hm6Am_associated_SNPs_3480 0 0 1 0 1 DLST chr14:75359689 5'GT 75359689 Upstream 47bp
1572 chr7 142989416 142989416 1 + G C CESC 142989415 + 142989395 142989435 41 CAAAGTGGGCAGTTTCAGCCAGAATGTGGAACTCCTCAACT CAAAGTGGGCAGTTTCAGCCACAATGTGGAACTCCTCAACT < 41bp 0.448169709011042 0.717501090456372 NA NA prediction 0.435002180912744 Functional Gain - CASP2 ENSG00000106144 CDS Human protein_coding chr7:142989415 chr7:142989416 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_3481 0 0 1 0 2 CASP2 chr7:142989393 3'AG 142989393 Downstream 24bp
1573 chr7 142989416 142989416 1 + G C CESC 142989415 + 142989395 142989435 41 CAAAGTGGGCAGTTTCAGCCAGAATGTGGAACTCCTCAACT CAAAGTGGGCAGTTTCAGCCACAATGTGGAACTCCTCAACT < 41bp 0.448169709011042 0.717501090456372 NA NA prediction 0.435002180912744 Functional Gain - CASP2 ENSG00000106144 CDS Human protein_coding chr7:142989415 chr7:142989416 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_3481 0 0 1 0 2 CASP2 chr7:142989474 5'GT 142989474 Upstream 59bp
1574 chr5 7878111 7878111 1 + G A UCEC 7878113 + 7878093 7878133 41 CTGGCCAGCCCTCAGAAAGCATTTTAGGTCAAGCAGAGGAC CTGGCCAGCCCTCAGAAAACATTTTAGGTCAAGCAGAGGAC < 41bp 0.462396250909024 0.717445087998425 NA NA prediction 0.43489017599685 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7878113 chr5:7878111 synonymous SNV . 0 19 hm6Am_associated_SNPs_3483 0 0 1 2 1 MTRR chr5:7878057 3'AG 7878057 Downstream 55bp
1575 chr6 160240082 160240082 1 + G C BRCA 160240081 + 160240061 160240101 41 GCAAGTCTACCATAAGTTTCAGAATCTCTGCAAGTTTGATG GCAAGTCTACCATAAGTTTCACAATCTCTGCAAGTTTGATG < 41bp 0.450863361425549 0.717427658758031 NA NA prediction 0.434855317516063 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160240081 chr6:160240082 nonsynonymous SNV 0.960 2 22 hm6Am_associated_SNPs_3484 0 0 1 0 1 PNLDC1 chr6:160240153 5'GT 160240153 Upstream 72bp
1576 chr11 47256343 47256343 1 + G A rs144266685 47256345 + 47256325 47256365 41 GCACAAAAAGAAAGTGACGCATGTGGCCCTGAACCCATGCT GCACAAAAAGAAAGTGACACATGTGGCCCTGAACCCATGCT < 41bp 0.466011093475639 0.717382501886334 NA NA prediction 0.434765003772669 Functional Gain - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47256345 chr11:47256343 synonymous SNV . 0 19 hm6Am_associated_SNPs_3485 1 0 1 0 1 DDB2 chr11:47256308 3'AG 47256308 Downstream 36bp
1577 chr11 118947663 118947663 1 + G A UCEC 118947665 + 118947645 118947685 41 AGTTTCTGGATGCCCAGCGCATTCACAACCTGACTGCCTAC AGTTTCTGGATGCCCAGCACATTCACAACCTGACTGCCTAC < 41bp 0.454586074566753 0.717268816430518 NA NA prediction 0.434537632861036 Functional Gain - VPS11 ENSG00000160695 CDS Human protein_coding chr11:118947665 chr11:118947663 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_3486 0 0 0 0 1 VPS11 chr11:118947607 3'AG 118947607 Downstream 57bp
1578 chr8 67372555 67372555 1 + G A HNSC 67372557 + 67372537 67372577 41 TTCTAGGAGCCGACACCCGCACTGCCAGGATCCAAGATGCA TTCTAGGAGCCGACACCCACACTGCCAGGATCCAAGATGCA < 41bp 0.603960973097323 0.821167356043187 NA NA prediction 0.434412765891728 Functional Gain - ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67372557 chr8:67372555 nonsynonymous SNV 0.665 0 19 hm6Am_associated_SNPs_3489 0 0 0 4 1 ADHFE1 chr8:67372543 3'AG 67372543 Downstream 13bp
1579 chr21 38072151 38072151 1 + G A UCEC 38072153 + 38072133 38072173 41 GCCGTCGGCCATCACTTCGCAGCTGGACAAAGCGTCCATCA GCCGTCGGCCATCACTTCACAGCTGGACAAAGCGTCCATCA < 41bp 0.603246784557041 0.820337769858467 NA NA prediction 0.434181970602852 Functional Gain - SIM2 ENSG00000159263 CDS Human protein_coding chr21:38072153 chr21:38072151 synonymous SNV . 0 19 hm6Am_associated_SNPs_3493 0 0 0 0 1 SIM2 chr21:38072221 5'GT 38072221 Upstream 71bp
1580 chr3 131081077 131081077 1 + G T HNSC 131081079 + 131081059 131081099 41 TCGTGGACTCGCAAGACAGCAGCCTGGAGGACGGGCTGAAC TCGTGGACTCGCAAGACATCAGCCTGGAGGACGGGCTGAAC < 41bp 0.716719791125505 0.933725656122212 NA NA prediction 0.434011729993413 Functional Gain - NUDT16P1 ENSG00000246082 ncRNA_exonic Human transcribed_unitary_pseudogene chr3:131081079 chr3:131081077 . . 0 19 hm6Am_associated_SNPs_3496 0 0 0 0 1 NUDT16P1 chr3:131081016 3'AG 131081016 Downstream 62bp
1581 chr3 195400788 195400788 1 + G A GBM 195400790 + 195400770 195400810 41 GGTGTCAACCGCCTCGGGGCAAACTCGCTGTTGGACCTGGT GGTGTCAACCGCCTCGGGACAAACTCGCTGTTGGACCTGGT < 41bp 0.599084362978734 0.816073395561437 NA NA prediction 0.433978065165406 Functional Gain - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195400790 chr3:195400788 . . 0 19 hm6Am_associated_SNPs_3498 0 0 1 0 1 SDHAP2 chr3:195400689 3'AG 195400689 Downstream 100bp
1582 chr15 62538784 62538784 1 - C T UCEC 62538782 - 62538762 62538802 41 GCTACAAGCAGAGGCTGAGCACCTGTGGAAGGAGCTGGAGA GCTACAAGCAGAGGCTGAACACCTGTGGAAGGAGCTGGAGA < 41bp 0.466908365148238 0.716975496568133 NA NA prediction 0.433950993136266 Functional Gain - GOLGA2P11 ENSG00000166104 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:62538782 chr15:62538784 . . 0 19 hm6Am_associated_SNPs_3499 0 0 0 0 1 GOLGA2P11 chr15:62538854 3'AG 62538854 Downstream 71bp
1583 chr7 27285564 27285564 1 + G T COAD 27285566 + 27285546 27285586 41 CCTGGCCATGACGTGGCCGCACCCGGCGGACCCCGCCTTCT CCTGGCCATGACGTGGCCTCACCCGGCGGACCCCGCCTTCT < 41bp 0.299358730638677 0.716953970053294 NA NA prediction 0.433907940106588 Functional Gain - EVX1 ENSG00000106038 CDS Human protein_coding chr7:27285566 chr7:27285564 synonymous SNV . 0 19 hm6Am_associated_SNPs_3501 0 0 0 0 1 EVX1 chr7:27285505 3'AG 27285505 Downstream 60bp
1584 chr18 76755393 76755393 1 + G A HNSC 76755395 + 76755375 76755415 41 GCAGATCCATGAGCGCACGCACACCGGCGAGAAGCCGTTCG GCAGATCCATGAGCGCACACACACCGGCGAGAAGCCGTTCG < 41bp 0.465380914377052 0.716934010559212 NA NA prediction 0.433868021118424 Functional Gain - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76755395 chr18:76755393 synonymous SNV . 0 19 hm6Am_associated_SNPs_3504 0 0 0 0 1 SALL3 chr18:76755462 5'GT 76755462 Upstream 70bp
1585 chr12 121570841 121570841 1 + G A rs139137149 121570843 + 121570823 121570863 41 AAGTCACTCGGATCCAGAGCATGAATTATGGCACCATTAAG AAGTCACTCGGATCCAGAACATGAATTATGGCACCATTAAG < 41bp 0.576915931943015 0.7937250698943 NA NA prediction 0.43361827590257 Functional Gain - P2RX7 ENSG00000089041 CDS Human protein_coding chr12:121570843 chr12:121570841 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_3505 0 0 0 0 1 P2RX7 chr12:121570898 5'GT 121570898 Upstream 58bp
1586 chr1 171761238 171761238 1 + G T LAML 171761240 + 171761220 171761260 41 ATCATTTTCCAAAGTCCTGCATTGATGCTGTGGAGATCGAT ATCATTTTCCAAAGTCCTTCATTGATGCTGTGGAGATCGAT < 41bp 0.299749679766756 0.716741432683497 NA NA prediction 0.433482865366994 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171761240 chr1:171761238 nonsynonymous SNV 0.895 0 19 hm6Am_associated_SNPs_3508 0 0 0 0 1 METTL13 chr1:171761157 3'AG 171761157 Downstream 82bp
1587 chr14 24617067 24617067 1 + G A BLCA 24617069 + 24617049 24617089 41 TACCTGCAGCTGGACGCCGCACGCCTTGTCCGCTGCAACGC TACCTGCAGCTGGACGCCACACGCCTTGTCCGCTGCAACGC < 41bp 0.460756717035851 0.716730113183928 NA NA prediction 0.433460226367855 Functional Gain - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617069 chr14:24617067 nonsynonymous SNV 0.998 0 19 hm6Am_associated_SNPs_3510 0 0 0 0 1 RNF31 chr14:24617099 5'GT 24617099 Upstream 33bp
1588 chr9 84362945 84362945 1 + G A rs186122757 84362947 + 84362927 84362967 41 GGCAATAAGCAAAGATTCGCACCTCTAGCCTCCGGGGAGCT GGCAATAAGCAAAGATTCACACCTCTAGCCTCCGGGGAGCT < 41bp 0.471325995370324 0.716554262347775 NA NA prediction 0.433108524695549 Functional Gain - LOC101927502 ENSG00000233926 ncRNA_exonic Human lincRNA chr9:84362947 chr9:84362945 . . 0 19 hm6Am_associated_SNPs_3514 0 0 0 0 2 LOC101927502 chr9:84362883 3'AG 84362883 Downstream 63bp
1589 chr9 84362945 84362945 1 + G A rs186122757 84362947 + 84362927 84362967 41 GGCAATAAGCAAAGATTCGCACCTCTAGCCTCCGGGGAGCT GGCAATAAGCAAAGATTCACACCTCTAGCCTCCGGGGAGCT < 41bp 0.471325995370324 0.716554262347775 NA NA prediction 0.433108524695549 Functional Gain - LOC101927502 ENSG00000233926 ncRNA_exonic Human lincRNA chr9:84362947 chr9:84362945 . . 0 19 hm6Am_associated_SNPs_3514 0 0 0 0 2 LOC101927502 chr9:84362994 5'GT 84362994 Upstream 50bp
1590 chr2 99189336 99189336 1 + G C BRCA 99189335 + 99189315 99189355 41 GCTGCTGCGGTTTCTGGGTCAGAACGTGCATGCCCGGAAGA GCTGCTGCGGTTTCTGGGTCACAACGTGCATGCCCGGAAGA < 41bp 0.465168852801716 0.716545372666765 NA NA prediction 0.433090745333529 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99189335 chr2:99189336 nonsynonymous SNV 0.985 3 22 hm6Am_associated_SNPs_3515 0 0 1 0 2 INPP4A chr2:99189278 3'AG 99189278 Downstream 59bp
1591 chr2 99189336 99189336 1 + G C BRCA 99189335 + 99189315 99189355 41 GCTGCTGCGGTTTCTGGGTCAGAACGTGCATGCCCGGAAGA GCTGCTGCGGTTTCTGGGTCACAACGTGCATGCCCGGAAGA < 41bp 0.465168852801716 0.716545372666765 NA NA prediction 0.433090745333529 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99189335 chr2:99189336 nonsynonymous SNV 0.985 3 22 hm6Am_associated_SNPs_3515 0 0 1 0 2 INPP4A chr2:99189390 5'GT 99189390 Upstream 55bp
1592 chr12 54893148 54893148 1 + G C CESC 54893147 + 54893127 54893167 41 TTCTCTCTGCAGACTTGTTCAGACCCCAAATCTAAGCCACC TTCTCTCTGCAGACTTGTTCACACCCCAAATCTAAGCCACC < 41bp 0.589571600819147 0.806099628376268 NA NA prediction 0.433056055114242 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54893147 chr12:54893148 nonsynonymous SNV 0.970 2 22 hm6Am_associated_SNPs_3516 0 0 1 0 1 NCKAP1L chr12:54893139 3'AG 54893139 Downstream 10bp
1593 chr20 62663321 62663321 1 + G A SKCM 62663323 + 62663303 62663343 41 CCAGGGAGTGGTTCCACCGCACTGTGAAGATTGACTCGGAC CCAGGGAGTGGTTCCACCACACTGTGAAGATTGACTCGGAC < 41bp 0.456949474031447 0.716486403828186 NA NA prediction 0.432972807656372 Functional Gain - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62663323 chr20:62663321 nonsynonymous SNV 0.998 4 19 hm6Am_associated_SNPs_3520 0 0 1 0 2 PRPF6 chr20:62663271 3'AG 62663271 Downstream 51bp
1594 chr20 62663321 62663321 1 + G A SKCM 62663323 + 62663303 62663343 41 CCAGGGAGTGGTTCCACCGCACTGTGAAGATTGACTCGGAC CCAGGGAGTGGTTCCACCACACTGTGAAGATTGACTCGGAC < 41bp 0.456949474031447 0.716486403828186 NA NA prediction 0.432972807656372 Functional Gain - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62663323 chr20:62663321 nonsynonymous SNV 0.998 4 19 hm6Am_associated_SNPs_3520 0 0 1 0 2 PRPF6 chr20:62663397 5'GT 62663397 Upstream 77bp
1595 chr19 11352177 11352177 1 + G T THYM 11352179 + 11352159 11352199 41 CACAGGCCACGTGCAGCGGCAGAGGCGGGAGATGGTGGCAC CACAGGCCACGTGCAGCGTCAGAGGCGGGAGATGGTGGCAC < 41bp 0.291500536992233 0.716481822517955 NA NA prediction 0.43296364503591 Functional Gain - ANGPTL8 ENSG00000130173 CDS Human protein_coding chr19:11352179 chr19:11352177 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_3522 0 0 1 0 2 ANGPTL8 chr19:11352121 3'AG 11352121 Downstream 57bp
1596 chr19 11352177 11352177 1 + G T THYM 11352179 + 11352159 11352199 41 CACAGGCCACGTGCAGCGGCAGAGGCGGGAGATGGTGGCAC CACAGGCCACGTGCAGCGTCAGAGGCGGGAGATGGTGGCAC < 41bp 0.291500536992233 0.716481822517955 NA NA prediction 0.43296364503591 Functional Gain - ANGPTL8 ENSG00000130173 CDS Human protein_coding chr19:11352179 chr19:11352177 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_3522 0 0 1 0 2 ANGPTL8 chr19:11352230 5'GT 11352230 Upstream 54bp
1597 chr9 91934568 91934568 1 + G A rs373683691 91934570 + 91934550 91934590 41 CTCATATTTTTCCTCAGGGCATCAAGTTATCAGCAGATGTC CTCATATTTTTCCTCAGGACATCAAGTTATCAGCAGATGTC < 41bp 0.525908196671274 0.742371401816242 NA NA prediction 0.432926410289935 Functional Gain - SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91934570 chr9:91934568 nonsynonymous SNV 0.998 1 19 hm6Am_associated_SNPs_3524 0 0 1 0 1 SECISBP2 chr9:91934567 3'AG 91934567 Downstream 2bp
1598 chr16 90059165 90059165 1 + G A UCEC 90059167 + 90059147 90059187 41 ACGTCGTGGTGTTGGCTGGCACCAACCGCCCTGACGTCCTG ACGTCGTGGTGTTGGCTGACACCAACCGCCCTGACGTCCTG < 41bp 0.589027839075104 0.805487004023494 NA NA prediction 0.43291832989678 Functional Gain - AFG3L1P ENSG00000223959 ncRNA_exonic Human transcribed_unitary_pseudogene chr16:90059167 chr16:90059165 . . 0 19 hm6Am_associated_SNPs_3525 0 0 1 0 1 AFG3L1P chr16:90059236 5'GT 90059236 Upstream 72bp
1599 chr1 17944938 17944938 1 + G A COAD 17944940 + 17944920 17944960 41 GGGCGTGATGTGGGCCCGGCAGGAGGGTCTGCACCACCCCC GGGCGTGATGTGGGCCCGACAGGAGGGTCTGCACCACCCCC < 41bp 0.595275002636843 0.811724053718359 NA NA prediction 0.432898102163033 Functional Gain - ARHGEF10L ENSG00000074964 CDS Human protein_coding chr1:17944940 chr1:17944938 synonymous SNV . 0 19 hm6Am_associated_SNPs_3526 0 0 1 0 1 ARHGEF10L chr1:17945017 5'GT 17945017 Upstream 80bp
1600 chr4 15688071 15688071 1 + G A rs548464759 15688073 + 15688053 15688093 41 AGTCTCTTTCATCATCAAGCAGACATACTCAAGGTACCAAC AGTCTCTTTCATCATCAAACAGACATACTCAAGGTACCAAC < 41bp 0.538646817513294 0.755074434333527 NA NA prediction 0.432855233640464 Functional Gain - FAM200B ENSG00000237765 UTR5 Human protein_coding chr4:15688073 chr4:15688071 . . 0 19 hm6Am_associated_SNPs_3528 0 0 1 6 1 FAM200B chr4:15688085 5'GT 15688085 Upstream 15bp
1601 chr11 33083117 33083117 1 + G C BLCA 33083116 + 33083096 33083136 41 CAGTGGCTGGAAGAAGCCTCAGAGGACCTTATGACTCAGAA CAGTGGCTGGAAGAAGCCTCACAGGACCTTATGACTCAGAA < 41bp 0.452543563046811 0.71632952693477 NA NA prediction 0.43265905386954 Functional Gain - TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33083116 chr11:33083117 nonsynonymous SNV 0.147 0 22 hm6Am_associated_SNPs_3530 0 0 1 0 1 TCP11L1 chr11:33083076 3'AG 33083076 Downstream 42bp
1602 chr10 135345697 135345697 1 + G T LUAD 135345699 + 135345679 135345719 41 TAGCCGACATCCTCTTCCGCAAGCATTTTGACTACAATGAT TAGCCGACATCCTCTTCCTCAAGCATTTTGACTACAATGAT < 41bp 0.650637035020971 0.866962833994331 NA NA prediction 0.43265159794672 Functional Gain - CYP2E1 ENSG00000130649 CDS Human protein_coding chr10:135345699 chr10:135345697 nonsynonymous SNV 0.036 1 19 hm6Am_associated_SNPs_3531 0 0 0 0 2 CYP2E1 chr10:135345628 3'AG 135345628 Downstream 70bp
1603 chr10 135345697 135345697 1 + G T LUAD 135345699 + 135345679 135345719 41 TAGCCGACATCCTCTTCCGCAAGCATTTTGACTACAATGAT TAGCCGACATCCTCTTCCTCAAGCATTTTGACTACAATGAT < 41bp 0.650637035020971 0.866962833994331 NA NA prediction 0.43265159794672 Functional Gain - CYP2E1 ENSG00000130649 CDS Human protein_coding chr10:135345699 chr10:135345697 nonsynonymous SNV 0.036 1 19 hm6Am_associated_SNPs_3531 0 0 0 0 2 CYP2E1 chr10:135345788 5'GT 135345788 Upstream 92bp
1604 chr10 134997377 134997377 1 + G T UCEC 134997379 + 134997359 134997399 41 GGTGTTCCCGTCCCCAGAGCATCATCGCGCTGTGTGAAGAG GGTGTTCCCGTCCCCAGATCATCATCGCGCTGTGTGAAGAG < 41bp 0.30021918894033 0.716194914555566 NA NA prediction 0.432389829111133 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:134997379 chr10:134997377 nonsynonymous SNV 0.851 4 19 hm6Am_associated_SNPs_3535 0 0 0 0 1 KNDC1 chr10:134997376 3'AG 134997376 Downstream 2bp
1605 chr7 99305525 99305525 1 + G T LAML 99305527 + 99305507 99305547 41 AGCAAACCTCATGCCAATGCAGTTTCTGGGTCCACTTCCAA AGCAAACCTCATGCCAATTCAGTTTCTGGGTCCACTTCCAA < 41bp 0.298832580509835 0.716132801004578 NA NA prediction 0.432265602009155 Functional Gain - CYP3A7;CYP3A7-CYP3A51P ENSG00000160870 CDS Human protein_coding chr7:99305527 chr7:99305525 stopgain 0.835 1 19 hm6Am_associated_SNPs_3538 0 0 0 1 1 CYP3A7;CYP3A7-CYP3A51P chr7:99305452 3'AG 99305452 Downstream 74bp
1606 chr6 24357736 24357736 1 - C G LUAD 24357737 - 24357717 24357757 41 CCGGAAGCTAGACCAGATCCAGAGCGGGGGCAATTACGTGG CCGGAAGCTAGACCAGATCCACAGCGGGGGCAATTACGTGG < 41bp 0.589911745125666 0.805957747290151 NA NA prediction 0.43209200432897 Functional Gain - DCDC2 ENSG00000146038 CDS Human protein_coding chr6:24357737 chr6:24357736 nonsynonymous SNV 0.998 2 22 hm6Am_associated_SNPs_3540 0 0 1 0 1 DCDC2 chr6:24357686 5'GT 24357686 Upstream 51bp
1607 chr2 220379949 220379949 1 + G A UCEC 220379951 + 220379931 220379971 41 TGGTAGACATCCTCAACCGCACTGGCCACCAGCTCGCCGAC TGGTAGACATCCTCAACCACACTGGCCACCAGCTCGCCGAC < 41bp 0.608815873094641 0.824758894812955 NA NA prediction 0.431886043436628 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220379951 chr2:220379949 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3543 0 0 0 0 1 ASIC4 chr2:220380028 5'GT 220380028 Upstream 80bp
1608 chrX 1407434 1407434 1 + G C LUAD 1407436 + 1407416 1407456 41 GTAACAACGAATGTTCGTGCACATTTCGTGAAATTTGTCTG GTAACAACGAATGTTCGTCCACATTTCGTGAAATTTGTCTG < 41bp 0.404561396007478 0.715894419348729 NA NA prediction 0.431788838697458 Functional Gain - CSF2RA ENSG00000198223 CDS Human protein_coding chrX:1407436 chrX:1407434 nonsynonymous SNV 0.002 3 19 hm6Am_associated_SNPs_3544 0 0 0 0 1 CSF2RA chrX:1407412 3'AG 1407412 Downstream 23bp
1609 chr6 158454645 158454645 1 + G T GBM 158454647 + 158454627 158454667 41 TTAGCTGTGAGCGCACAGGCACTCGCTTCCACACCCGTGGC TTAGCTGTGAGCGCACAGTCACTCGCTTCCACACCCGTGGC < 41bp 0.297651849207739 0.715882292135462 NA NA prediction 0.431764584270924 Functional Gain - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158454647 chr6:158454645 nonsynonymous SNV 0.007 4 19 hm6Am_associated_SNPs_3546 0 0 0 0 1 SYNJ2 chr6:158454712 5'GT 158454712 Upstream 68bp
1610 chr3 129810194 129810194 1 + G A rs191936561 129810196 + 129810176 129810216 41 CATGAAGCTGGGCAGCACGCACTCTCCGTTCAGGGCCCGGT CATGAAGCTGGGCAGCACACACTCTCCGTTCAGGGCCCGGT < 41bp 0.59467976640267 0.810518270622798 NA NA prediction 0.431677008440254 Functional Gain - ALG1L2 ENSG00000251287 ncRNA_exonic Human protein_coding chr3:129810196 chr3:129810194 . . 0 19 hm6Am_associated_SNPs_3547 0 0 0 0 2 ALG1L2 chr3:129810104 3'AG 129810104 Downstream 91bp
1611 chr3 129810194 129810194 1 + G A rs191936561 129810196 + 129810176 129810216 41 CATGAAGCTGGGCAGCACGCACTCTCCGTTCAGGGCCCGGT CATGAAGCTGGGCAGCACACACTCTCCGTTCAGGGCCCGGT < 41bp 0.59467976640267 0.810518270622798 NA NA prediction 0.431677008440254 Functional Gain - ALG1L2 ENSG00000251287 ncRNA_exonic Human protein_coding chr3:129810196 chr3:129810194 . . 0 19 hm6Am_associated_SNPs_3547 0 0 0 0 2 ALG1L2 chr3:129810214 5'GT 129810214 Upstream 21bp
1612 chr5 1214110 1214110 1 + G A GBM 1214112 + 1214092 1214132 41 ACCTGGCTGGACGCGGGCGCACAGGTCTTCTTCTCCTTCTC ACCTGGCTGGACGCGGGCACACAGGTCTTCTTCTCCTTCTC < 41bp 0.610237492670318 0.826066739340768 NA NA prediction 0.4316584933409 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1214112 chr5:1214110 nonsynonymous SNV 0.303 0 19 hm6Am_associated_SNPs_3548 0 0 0 0 2 SLC6A19 chr5:1214068 3'AG 1214068 Downstream 43bp
1613 chr5 1214110 1214110 1 + G A GBM 1214112 + 1214092 1214132 41 ACCTGGCTGGACGCGGGCGCACAGGTCTTCTTCTCCTTCTC ACCTGGCTGGACGCGGGCACACAGGTCTTCTTCTCCTTCTC < 41bp 0.610237492670318 0.826066739340768 NA NA prediction 0.4316584933409 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1214112 chr5:1214110 nonsynonymous SNV 0.303 0 19 hm6Am_associated_SNPs_3548 0 0 0 0 2 SLC6A19 chr5:1214180 5'GT 1214180 Upstream 71bp
1614 chr16 67859941 67859941 1 + G A CESC 67859943 + 67859923 67859963 41 AGCTGCAGGAGATCCAGCGCACTTCCACGCCGCGGCCTGAC AGCTGCAGGAGATCCAGCACACTTCCACGCCGCGGCCTGAC < 41bp 0.456309408744186 0.715733150605507 NA NA prediction 0.431466301211013 Functional Gain - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67859943 chr16:67859941 nonsynonymous SNV 0.993 3 19 hm6Am_associated_SNPs_3550 0 0 0 0 1 TSNAXIP1 chr16:67859979 5'GT 67859979 Upstream 39bp
1615 chr1 16357035 16357035 1 + G A rs56095526 16357037 + 16357017 16357057 41 GCTGACCGGCCAGATAGTGCATGCACTGCCCGTGCTGATGG GCTGACCGGCCAGATAGTACATGCACTGCCCGTGCTGATGG < 41bp 0.449364425140787 0.715723842766327 NA NA prediction 0.431447685532653 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16357037 chr1:16357035 synonymous SNV . 0 19 hm6Am_associated_SNPs_3551 0 0 0 0 1 CLCNKA chr1:16356956 3'AG 16356956 Downstream 80bp
1616 chr16 4925364 4925364 1 + G T HNSC 4925366 + 4925346 4925386 41 GGTGGGACCCAGGGAGTGGCAAAGTTGCTGACCTCGCCGTC GGTGGGACCCAGGGAGTGTCAAAGTTGCTGACCTCGCCGTC < 41bp 0.29755313738914 0.715709734459342 NA NA prediction 0.431419468918685 Functional Gain - UBN1 ENSG00000118900 CDS Human protein_coding chr16:4925366 chr16:4925364 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_3553 0 0 1 0 1 UBN1 chr16:4925435 5'GT 4925435 Upstream 72bp
1617 chr1 42922672 42922672 1 + G A UCEC 42922674 + 42922654 42922694 41 GCTGCAGGCACCTTCCTGGCAGTAGAGTTCACCACTTTGGC GCTGCAGGCACCTTCCTGACAGTAGAGTTCACCACTTTGGC < 41bp 0.602868909859156 0.818344432981479 NA NA prediction 0.430951046244647 Functional Gain - PPCS ENSG00000127125 CDS Human protein_coding chr1:42922674 chr1:42922672 nonsynonymous SNV 0.841 1 19 hm6Am_associated_SNPs_3558 0 0 0 0 1 PPCS chr1:42922744 5'GT 42922744 Upstream 73bp
1618 chr5 55147452 55147452 1 + G A rs140079651 55147454 + 55147434 55147474 41 ATGTGTCTGTGAATGTCCGCAAAACATTGTGAGTATTGATT ATGTGTCTGTGAATGTCCACAAAACATTGTGAGTATTGATT < 41bp 0.551907233673324 0.767373516318569 NA NA prediction 0.430932565290489 Functional Gain - IL31RA ENSG00000164509 CDS Human protein_coding chr5:55147454 chr5:55147452 synonymous SNV . 0 19 hm6Am_associated_SNPs_3559 0 0 0 0 1 IL31RA chr5:55147461 5'GT 55147461 Upstream 10bp
1619 chr19 18853803 18853803 1 + G C CESC 18853802 + 18853782 18853822 41 GTCCCTGCCCAACGTGAACCAGATCGGGAGTGGCACCATGG GTCCCTGCCCAACGTGAACCACATCGGGAGTGGCACCATGG < 41bp 0.462823976158217 0.715390847357555 NA NA prediction 0.430781694715109 Functional Gain - CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18853802 chr19:18853803 nonsynonymous SNV 0.999 4 22 hm6Am_associated_SNPs_3566 0 0 1 0 2 CRTC1 chr19:18853720 3'AG 18853720 Downstream 84bp
1620 chr19 18853803 18853803 1 + G C CESC 18853802 + 18853782 18853822 41 GTCCCTGCCCAACGTGAACCAGATCGGGAGTGGCACCATGG GTCCCTGCCCAACGTGAACCACATCGGGAGTGGCACCATGG < 41bp 0.462823976158217 0.715390847357555 NA NA prediction 0.430781694715109 Functional Gain - CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18853802 chr19:18853803 nonsynonymous SNV 0.999 4 22 hm6Am_associated_SNPs_3566 0 0 1 0 2 CRTC1 chr19:18853836 5'GT 18853836 Upstream 34bp
1621 chr1 159779275 159779275 1 + G A OV 159779277 + 159779257 159779297 41 GTGCAGCTCCTCTGTGAGGCACAGAGGGGCTCCCCTCCGAT GTGCAGCTCCTCTGTGAGACACAGAGGGGCTCCCCTCCGAT < 41bp 0.618160045900339 0.833447061631778 NA NA prediction 0.430574031462879 Functional Gain - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159779277 chr1:159779275 nonsynonymous SNV 0.056 0 19 hm6Am_associated_SNPs_3568 0 0 0 0 1 FCRL6 chr1:159779192 3'AG 159779192 Downstream 84bp
1622 chr19 17389748 17389748 1 + G A BLCA 17389750 + 17389730 17389770 41 CCCTGGAGTTGCACAACTGCATGGCGAAACTGTTGGCCCAC CCCTGGAGTTGCACAACTACATGGCGAAACTGTTGGCCCAC < 41bp 0.604079012826882 0.819315083571725 NA NA prediction 0.430472141489686 Functional Gain - BABAM1 ENSG00000105393 CDS Human protein_coding chr19:17389750 chr19:17389748 nonsynonymous SNV 0.999 0 19 hm6Am_associated_SNPs_3569 0 0 1 0 1 BABAM1 chr19:17389654 3'AG 17389654 Downstream 95bp
1623 chr2 241530381 241530381 1 + G C BLCA 241530380 + 241530360 241530400 41 ACTCTGTTTCTCCCGCTGCCAGAGGGAGGATGTGTTCTGGC ACTCTGTTTCTCCCGCTGCCACAGGGAGGATGTGTTCTGGC < 41bp 0.591671304919964 0.806896805133276 NA NA prediction 0.430451000426624 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241530380 chr2:241530381 nonsynonymous SNV 1.000 2 22 hm6Am_associated_SNPs_3570 0 0 0 0 2 CAPN10 chr2:241530417 5'GT 241530417 Upstream 37bp
1624 chr2 241530381 241530381 1 + G C BLCA 241530380 + 241530360 241530400 41 ACTCTGTTTCTCCCGCTGCCAGAGGGAGGATGTGTTCTGGC ACTCTGTTTCTCCCGCTGCCACAGGGAGGATGTGTTCTGGC < 41bp 0.591671304919964 0.806896805133276 NA NA prediction 0.430451000426624 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241530380 chr2:241530381 nonsynonymous SNV 1.000 2 22 hm6Am_associated_SNPs_3570 0 0 0 0 2 CAPN10 chr2:241530428 5'GT 241530428 Upstream 48bp
1625 chr14 24846882 24846882 1 + G T LAML 24846884 + 24846864 24846904 41 GACCTGAGTGGCTTCCCTGCACCTCCTGGAGAAGAGCCTCC GACCTGAGTGGCTTCCCTTCACCTCCTGGAGAAGAGCCTCC < 41bp 0.350108963368303 0.715127549612035 NA NA prediction 0.430255099224071 Functional Gain - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24846884 chr14:24846882 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_3572 0 0 1 0 1 NFATC4 chr14:24846844 3'AG 24846844 Downstream 39bp
1626 chrX 155254994 155254994 1 + G A LGG 155254996 + 155254976 155255016 41 CCCTCCTGTGCCCCCACCGCAACAGCCACAGGCAGAGGAGG CCCTCCTGTGCCCCCACCACAACAGCCACAGGCAGAGGAGG < 41bp 0.60847921843298 0.823576909840583 NA NA prediction 0.430195382815206 Functional Gain - DDX11L16 ENSG00000182484;ENSG00000270726 ncRNA_exonic Human other chrX:155254996 chrX:155254994 . . 0 19 hm6Am_associated_SNPs_3574 0 0 1 0 1 DDX11L16 chrX:155254906 3'AG 155254906 Downstream 89bp
1627 chr9 74533417 74533417 1 + G A rs536879675 74533419 + 74533399 74533439 41 CCCCAGCCCCCGACCCCCGCATCGGTCCATGGCCTGTCAGG CCCCAGCCCCCGACCCCCACATCGGTCCATGGCCTGTCAGG < 41bp 0.45965342085285 0.715080501281019 NA NA prediction 0.430161002562038 Functional Gain - C9orf85 ENSG00000155621 UTR3 Human protein_coding chr9:74533419 chr9:74533417 . . 0 19 hm6Am_associated_SNPs_3575 0 0 0 0 2 C9orf85 chr9:74533341 3'AG 74533341 Downstream 77bp
1628 chr9 74533417 74533417 1 + G A rs536879675 74533419 + 74533399 74533439 41 CCCCAGCCCCCGACCCCCGCATCGGTCCATGGCCTGTCAGG CCCCAGCCCCCGACCCCCACATCGGTCCATGGCCTGTCAGG < 41bp 0.45965342085285 0.715080501281019 NA NA prediction 0.430161002562038 Functional Gain - C9orf85 ENSG00000155621 UTR3 Human protein_coding chr9:74533419 chr9:74533417 . . 0 19 hm6Am_associated_SNPs_3575 0 0 0 0 2 C9orf85 chr9:74533471 5'GT 74533471 Upstream 55bp
1629 chr2 105954140 105954140 1 + G A rs55772482 105954142 + 105954122 105954162 41 CCTTCTCCTCACTCTGGAGCAGGTTGGGCGCGCCGGATCGG CCTTCTCCTCACTCTGGAACAGGTTGGGCGCGCCGGATCGG < 41bp 0.610236453572323 0.825252416035542 NA NA prediction 0.430031924926438 Functional Gain - C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105954142 chr2:105954140 synonymous SNV . 0 19 hm6Am_associated_SNPs_3579 0 0 1 0 1 C2orf49 chr2:105954143 5'GT 105954143 Upstream 4bp
1630 chr6 25762243 25762243 1 + G A COAD 25762245 + 25762225 25762265 41 GGGACATTTCCAGTGATGGCAATTTAAACGTGGCTCAAGAG GGGACATTTCCAGTGATGACAATTTAAACGTGGCTCAAGAG < 41bp 0.590340685321538 0.805340518543905 NA NA prediction 0.429999666444735 Functional Gain - SLC17A4 ENSG00000146039 CDS Human protein_coding chr6:25762245 chr6:25762243 nonsynonymous SNV 0.002 0 19 hm6Am_associated_SNPs_3581 0 0 0 0 1 SLC17A4 chr6:25762281 5'GT 25762281 Upstream 39bp
1631 chr20 32344965 32344965 1 + G C KIRC 32344964 + 32344944 32344984 41 GTCCTCCTAGGTGCCAAACCAGTGTGTGGAGCCTCCAGTAT GTCCTCCTAGGTGCCAAACCACTGTGTGGAGCCTCCAGTAT < 41bp 0.449865027635931 0.714975223330557 NA NA prediction 0.429950446661114 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32344964 chr20:32344965 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_3582 0 0 1 0 1 ZNF341 chr20:32344954 3'AG 32344954 Downstream 12bp
1632 chr9 135102349 135102349 1 + G A PAAD 135102351 + 135102331 135102371 41 AGTGCAAGAAGAATTTCCGCACCCGGTCCTGGCGGGCCGGC AGTGCAAGAAGAATTTCCACACCCGGTCCTGGCGGGCCGGC < 41bp 0.455539040559359 0.714970931028215 NA NA prediction 0.429941862056431 Functional Gain - NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135102351 chr9:135102349 nonsynonymous SNV 0.998 0 19 hm6Am_associated_SNPs_3583 0 0 0 0 1 NTNG2 chr9:135102408 5'GT 135102408 Upstream 60bp
1633 chr3 45744976 45744976 1 + G A rs188211739 45744978 + 45744958 45744998 41 GAAGCTTGTGATGATGGAGCAGATGACGTACTTACCATTGA GAAGCTTGTGATGATGGAACAGATGACGTACTTACCATTGA < 41bp 0.514686748600048 0.729622661200688 NA NA prediction 0.429871825201279 Functional Gain - SACM1L ENSG00000211456 CDS Human protein_coding chr3:45744978 chr3:45744976 nonsynonymous SNV 0.936 0 19 hm6Am_associated_SNPs_3584 0 0 1 0 2 SACM1L chr3:45744930 3'AG 45744930 Downstream 47bp
1634 chr3 45744976 45744976 1 + G A rs188211739 45744978 + 45744958 45744998 41 GAAGCTTGTGATGATGGAGCAGATGACGTACTTACCATTGA GAAGCTTGTGATGATGGAACAGATGACGTACTTACCATTGA < 41bp 0.514686748600048 0.729622661200688 NA NA prediction 0.429871825201279 Functional Gain - SACM1L ENSG00000211456 CDS Human protein_coding chr3:45744978 chr3:45744976 nonsynonymous SNV 0.936 0 19 hm6Am_associated_SNPs_3584 0 0 1 0 2 SACM1L chr3:45745027 5'GT 45745027 Upstream 52bp
1635 chr12 82752588 82752588 1 + G A LGG 82752590 + 82752570 82752610 41 ACGCGCCCCCTAGTGGAAGCAGAGTGGGAAGCAGGTGGGTG ACGCGCCCCCTAGTGGAAACAGAGTGGGAAGCAGGTGGGTG < 41bp 0.457142135616621 0.714914934330311 NA NA prediction 0.429829868660622 Functional Gain - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82752590 chr12:82752588 nonsynonymous SNV 0.146 0 19 hm6Am_associated_SNPs_3586 0 0 0 0 1 METTL25 chr12:82752603 5'GT 82752603 Upstream 16bp
1636 chr16 67318714 67318714 1 + G A STAD 67318716 + 67318696 67318736 41 GCAGCTGCACTGGACCAGGCACCCTGACTTGCCTCCTGCCC GCAGCTGCACTGGACCAGACACCCTGACTTGCCTCCTGCCC < 41bp 0.452747243490845 0.714886744577983 NA NA prediction 0.429773489155967 Functional Gain - PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67318716 chr16:67318714 synonymous SNV . 0 19 hm6Am_associated_SNPs_3587 0 0 1 0 1 PLEKHG4 chr16:67318616 3'AG 67318616 Downstream 99bp
1637 chr2 45171770 45171770 1 + G A STAD 45171772 + 45171752 45171792 41 CGAGCCCGGCTGCCCCACGCACGGCTCGGCAGAGTCGCCGT CGAGCCCGGCTGCCCCACACACGGCTCGGCAGAGTCGCCGT < 41bp 0.464765374467838 0.714854096063195 NA NA prediction 0.42970819212639 Functional Gain - SIX3 ENSG00000138083 CDS Human protein_coding chr2:45171772 chr2:45171770 synonymous SNV . 0 19 hm6Am_associated_SNPs_3588 0 0 0 0 1 SIX3 chr2:45171707 3'AG 45171707 Downstream 64bp
1638 chr6 33169620 33169620 1 + G C BLCA 33169619 + 33169599 33169639 41 CCGGCATCGCTCTCTACTTCAGATCTTGCTCAGTTTTGCTT CCGGCATCGCTCTCTACTTCACATCTTGCTCAGTTTTGCTT < 41bp 0.522937434314001 0.737726172685143 NA NA prediction 0.429577476742283 Functional Gain - SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169619 chr6:33169620 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_3589 0 0 1 0 3 SLC39A7 chr6:33169522 3'AG 33169522 Downstream 99bp
1639 chr6 33169620 33169620 1 + G C BLCA 33169619 + 33169599 33169639 41 CCGGCATCGCTCTCTACTTCAGATCTTGCTCAGTTTTGCTT CCGGCATCGCTCTCTACTTCACATCTTGCTCAGTTTTGCTT < 41bp 0.522937434314001 0.737726172685143 NA NA prediction 0.429577476742283 Functional Gain - SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169619 chr6:33169620 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_3589 0 0 1 0 3 SLC39A7 chr6:33169538 3'AG 33169538 Downstream 83bp
1640 chr6 33169620 33169620 1 + G C BLCA 33169619 + 33169599 33169639 41 CCGGCATCGCTCTCTACTTCAGATCTTGCTCAGTTTTGCTT CCGGCATCGCTCTCTACTTCACATCTTGCTCAGTTTTGCTT < 41bp 0.522937434314001 0.737726172685143 NA NA prediction 0.429577476742283 Functional Gain - SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169619 chr6:33169620 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_3589 0 0 1 0 3 SLC39A7 chr6:33169690 5'GT 33169690 Upstream 71bp
1641 chr2 111020268 111020268 1 + G A UCEC 111020270 + 111020250 111020290 41 TAGACAACGCAGGTTGCCGCATACTTCTTTATTTGTGTAGA TAGACAACGCAGGTTGCCACATACTTCTTTATTTGTGTAGA < 41bp 0.569670881972901 0.7843234879548 NA NA prediction 0.429305211963799 Functional Gain - LOC100507334 ENSG00000261760 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:111020270 chr2:111020268 . . 0 19 hm6Am_associated_SNPs_3591 0 0 0 1 2 LOC100507334 chr2:111020228 3'AG 111020228 Downstream 41bp
1642 chr2 111020268 111020268 1 + G A UCEC 111020270 + 111020250 111020290 41 TAGACAACGCAGGTTGCCGCATACTTCTTTATTTGTGTAGA TAGACAACGCAGGTTGCCACATACTTCTTTATTTGTGTAGA < 41bp 0.569670881972901 0.7843234879548 NA NA prediction 0.429305211963799 Functional Gain - LOC100507334 ENSG00000261760 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:111020270 chr2:111020268 . . 0 19 hm6Am_associated_SNPs_3591 0 0 0 1 2 LOC100507334 chr2:111020342 5'GT 111020342 Upstream 75bp
1643 chr16 721945 721945 1 + G C LUAD 721947 + 721927 721967 41 GGGGCCCCGAGCTCCCACGCACAGTCCGCACAGAGGCCGGC GGGGCCCCGAGCTCCCACCCACAGTCCGCACAGAGGCCGGC < 41bp 0.698631916287815 0.913181582509734 NA NA prediction 0.429099332443837 Functional Gain - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:721947 chr16:721945 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_3594 0 0 1 0 2 RHOT2 chr16:721860 3'AG 721860 Downstream 86bp
1644 chr16 721945 721945 1 + G C LUAD 721947 + 721927 721967 41 GGGGCCCCGAGCTCCCACGCACAGTCCGCACAGAGGCCGGC GGGGCCCCGAGCTCCCACCCACAGTCCGCACAGAGGCCGGC < 41bp 0.698631916287815 0.913181582509734 NA NA prediction 0.429099332443837 Functional Gain - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:721947 chr16:721945 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_3594 0 0 1 0 2 RHOT2 chr16:722002 5'GT 722002 Upstream 58bp
1645 chr8 104388033 104388033 1 + G A STAD 104388035 + 104388015 104388055 41 GGAGCCCTGGGGCCAATGGCATTCCGGGTACACCTGGGATC GGAGCCCTGGGGCCAATGACATTCCGGGTACACCTGGGATC < 41bp 0.452063428703911 0.714402194131241 NA NA prediction 0.428804388262481 Functional Gain - CTHRC1 ENSG00000164932 CDS Human protein_coding chr8:104388035 chr8:104388033 nonsynonymous SNV 1.000 5 19 hm6Am_associated_SNPs_3598 0 0 0 0 1 CTHRC1 chr8:104387966 3'AG 104387966 Downstream 68bp
1646 chr21 45738472 45738472 1 + G A LUAD 45738474 + 45738454 45738494 41 GCCCCTCATGGAGTGCGTGCAGATGGTAAGCCCTGGGCCCC GCCCCTCATGGAGTGCGTACAGATGGTAAGCCCTGGGCCCC < 41bp 0.450180407488146 0.714364434335823 NA NA prediction 0.428728868671645 Functional Gain - PFKL ENSG00000141959 CDS Human protein_coding chr21:45738474 chr21:45738472 synonymous SNV . 0 19 hm6Am_associated_SNPs_3599 0 0 1 0 1 PFKL chr21:45738478 5'GT 45738478 Upstream 7bp
1647 chr15 25430597 25430597 1 + G A UCEC 25430599 + 25430579 25430619 41 CGTCCCTCCAGATGGTGAGCACAGAGGAAGAATTGCGTTAG CGTCCCTCCAGATGGTGAACACAGAGGAAGAATTGCGTTAG < 41bp 0.586699710232537 0.800965861531517 NA NA prediction 0.428532302597958 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25430599 chr15:25430597 . . 0 19 hm6Am_associated_SNPs_3602 0 0 0 0 1 SNHG14 chr15:25430590 3'AG 25430590 Downstream 8bp
1648 chr17 7942598 7942598 1 + G T HNSC 7942600 + 7942580 7942620 41 TGCCCCTGGACAATCTCGGCAAGGAGTTCACTGCGGGCGCT TGCCCCTGGACAATCTCGTCAAGGAGTTCACTGCGGGCGCT < 41bp 0.727930116630199 0.942148949810548 NA NA prediction 0.428437666360698 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7942600 chr17:7942598 nonsynonymous SNV 0.983 4 19 hm6Am_associated_SNPs_3603 0 0 0 0 1 ALOX15B chr17:7942620 5'GT 7942620 Upstream 23bp
1649 chr1 44584645 44584645 1 + G C LUAD 44584647 + 44584627 44584667 41 GAGCCGGTGGCAGGCGGCGCACCAGGCTGCCCAGGTGAGTC GAGCCGGTGGCAGGCGGCCCACCAGGCTGCCCAGGTGAGTC < 41bp 0.35127645851826 0.714191799235312 NA NA prediction 0.428383598470624 Functional Gain - KLF17 ENSG00000171872 CDS Human protein_coding chr1:44584647 chr1:44584645 synonymous SNV . 0 19 hm6Am_associated_SNPs_3605 0 0 0 0 1 KLF17 chr1:44584660 5'GT 44584660 Upstream 16bp
1650 chr2 97215070 97215070 1 + G A UCEC 97215072 + 97215052 97215092 41 CCCCAGGACTCCCCCGAGGCAGGCGGGGAGCGGGAGGAGGA CCCCAGGACTCCCCCGAGACAGGCGGGGAGCGGGAGGAGGA < 41bp 0.594767070726334 0.808946640988709 NA NA prediction 0.428359140524751 Functional Gain - ARID5A ENSG00000196843 CDS Human protein_coding chr2:97215072 chr2:97215070 nonsynonymous SNV 0.995 0 19 hm6Am_associated_SNPs_3608 0 0 0 0 1 ARID5A chr2:97215058 3'AG 97215058 Downstream 13bp
1651 chr2 219247765 219247765 1 + G A rs370365868 219247767 + 219247747 219247787 41 GACCAGCCCAGGGCCACAGCAAGCACCTCCCAGAGAGACCT GACCAGCCCAGGGCCACAACAAGCACCTCCCAGAGAGACCT < 41bp 0.538712623383906 0.752869658022863 NA NA prediction 0.428314069277914 Functional Gain - SLC11A1 ENSG00000018280 CDS Human protein_coding chr2:219247767 chr2:219247765 synonymous SNV . 0 19 hm6Am_associated_SNPs_3610 0 0 0 0 3 SLC11A1 chr2:219247683 3'AG 219247683 Downstream 83bp
1652 chr2 219247765 219247765 1 + G A rs370365868 219247767 + 219247747 219247787 41 GACCAGCCCAGGGCCACAGCAAGCACCTCCCAGAGAGACCT GACCAGCCCAGGGCCACAACAAGCACCTCCCAGAGAGACCT < 41bp 0.538712623383906 0.752869658022863 NA NA prediction 0.428314069277914 Functional Gain - SLC11A1 ENSG00000018280 CDS Human protein_coding chr2:219247767 chr2:219247765 synonymous SNV . 0 19 hm6Am_associated_SNPs_3610 0 0 0 0 3 SLC11A1 chr2:219247793 5'GT 219247793 Upstream 29bp
1653 chr2 219247765 219247765 1 + G A rs370365868 219247767 + 219247747 219247787 41 GACCAGCCCAGGGCCACAGCAAGCACCTCCCAGAGAGACCT GACCAGCCCAGGGCCACAACAAGCACCTCCCAGAGAGACCT < 41bp 0.538712623383906 0.752869658022863 NA NA prediction 0.428314069277914 Functional Gain - SLC11A1 ENSG00000018280 CDS Human protein_coding chr2:219247767 chr2:219247765 synonymous SNV . 0 19 hm6Am_associated_SNPs_3610 0 0 0 0 3 SLC11A1 chr2:219247825 5'GT 219247825 Upstream 61bp
1654 chr17 17030083 17030083 1 + G A COAD 17030085 + 17030065 17030105 41 TGGTGGATGGGGAGGGCCGCACGGGCCAGAAGTTCTCCCTG TGGTGGATGGGGAGGGCCACACGGGCCAGAAGTTCTCCCTG < 41bp 0.600282303156142 0.814374797861935 NA NA prediction 0.428184989411585 Functional Gain - MPRIP ENSG00000133030 CDS Human protein_coding chr17:17030085 chr17:17030083 nonsynonymous SNV 0.992 3 19 hm6Am_associated_SNPs_3612 0 0 1 0 2 MPRIP chr17:17030016 3'AG 17030016 Downstream 68bp
1655 chr17 17030083 17030083 1 + G A COAD 17030085 + 17030065 17030105 41 TGGTGGATGGGGAGGGCCGCACGGGCCAGAAGTTCTCCCTG TGGTGGATGGGGAGGGCCACACGGGCCAGAAGTTCTCCCTG < 41bp 0.600282303156142 0.814374797861935 NA NA prediction 0.428184989411585 Functional Gain - MPRIP ENSG00000133030 CDS Human protein_coding chr17:17030085 chr17:17030083 nonsynonymous SNV 0.992 3 19 hm6Am_associated_SNPs_3612 0 0 1 0 2 MPRIP chr17:17030167 5'GT 17030167 Upstream 85bp
1656 chr10 89265232 89265232 1 + G A UCEC 89265234 + 89265214 89265254 41 CCAGTTCCAAGCACCGCTGCATGGATAGCAGCGCCGCCTTC CCAGTTCCAAGCACCGCTACATGGATAGCAGCGCCGCCTTC < 41bp 0.449054596386088 0.714050202403348 NA NA prediction 0.428100404806696 Functional Gain - MINPP1 ENSG00000107789 CDS Human protein_coding chr10:89265234 chr10:89265232 nonsynonymous SNV 0.997 4 19 hm6Am_associated_SNPs_3613 0 0 1 0 1 MINPP1 chr10:89265309 5'GT 89265309 Upstream 78bp
1657 chr1 109778671 109778671 1 + G A STAD 109778673 + 109778653 109778693 41 GAAGAGATGATTACCACCGCAGAGGAGTTCTACCAGTCCCT GAAGAGATGATTACCACCACAGAGGAGTTCTACCAGTCCCT < 41bp 0.461923727508778 0.713992690656316 NA NA prediction 0.427985381312631 Functional Gain - SARS ENSG00000031698 CDS Human protein_coding chr1:109778673 chr1:109778671 nonsynonymous SNV 0.966 4 19 hm6Am_associated_SNPs_3616 0 0 1 0 2 SARS chr1:109778599 3'AG 109778599 Downstream 73bp
1658 chr1 109778671 109778671 1 + G A STAD 109778673 + 109778653 109778693 41 GAAGAGATGATTACCACCGCAGAGGAGTTCTACCAGTCCCT GAAGAGATGATTACCACCACAGAGGAGTTCTACCAGTCCCT < 41bp 0.461923727508778 0.713992690656316 NA NA prediction 0.427985381312631 Functional Gain - SARS ENSG00000031698 CDS Human protein_coding chr1:109778673 chr1:109778671 nonsynonymous SNV 0.966 4 19 hm6Am_associated_SNPs_3616 0 0 1 0 2 SARS chr1:109778728 5'GT 109778728 Upstream 58bp
1659 chr19 11113781 11113781 1 + G C KIRP 11113783 + 11113763 11113803 41 GTGGGAAGATCCTCACAGGCACAGATGCCCCCAAAGCCGGG GTGGGAAGATCCTCACAGCCACAGATGCCCCCAAAGCCGGG < 41bp 0.363291773298407 0.713854181632373 NA NA prediction 0.427708363264746 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11113783 chr19:11113781 nonsynonymous SNV 0.950 3 19 hm6Am_associated_SNPs_3621 0 0 1 0 2 SMARCA4 chr19:11113705 3'AG 11113705 Downstream 77bp
1660 chr19 11113781 11113781 1 + G C KIRP 11113783 + 11113763 11113803 41 GTGGGAAGATCCTCACAGGCACAGATGCCCCCAAAGCCGGG GTGGGAAGATCCTCACAGCCACAGATGCCCCCAAAGCCGGG < 41bp 0.363291773298407 0.713854181632373 NA NA prediction 0.427708363264746 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11113783 chr19:11113781 nonsynonymous SNV 0.950 3 19 hm6Am_associated_SNPs_3621 0 0 1 0 2 SMARCA4 chr19:11113835 5'GT 11113835 Upstream 55bp
1661 chr3 38519408 38519408 1 + G A COAD 38519410 + 38519390 38519430 41 ACTTCTGCTGCTGTGAAGGCAACTTCTGCAACGAACGCTTC ACTTCTGCTGCTGTGAAGACAACTTCTGCAACGAACGCTTC < 41bp 0.562420662574158 0.77624392719624 NA NA prediction 0.427646529244163 Functional Gain - ACVR2B ENSG00000114739 CDS Human protein_coding chr3:38519410 chr3:38519408 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_3623 0 0 1 0 2 ACVR2B chr3:38519352 3'AG 38519352 Downstream 57bp
1662 chr3 38519408 38519408 1 + G A COAD 38519410 + 38519390 38519430 41 ACTTCTGCTGCTGTGAAGGCAACTTCTGCAACGAACGCTTC ACTTCTGCTGCTGTGAAGACAACTTCTGCAACGAACGCTTC < 41bp 0.562420662574158 0.77624392719624 NA NA prediction 0.427646529244163 Functional Gain - ACVR2B ENSG00000114739 CDS Human protein_coding chr3:38519410 chr3:38519408 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_3623 0 0 1 0 2 ACVR2B chr3:38519461 5'GT 38519461 Upstream 54bp
1663 chr9 139311610 139311610 1 + G A UCEC 139311612 + 139311592 139311632 41 CAGCCGGCCTGGGGGAGCGCAGAGGCCGTGGATATTGACAG CAGCCGGCCTGGGGGAGCACAGAGGCCGTGGATATTGACAG < 41bp 0.454370364983802 0.713782283884652 NA NA prediction 0.427564567769303 Functional Gain - PMPCA ENSG00000165688 CDS Human protein_coding chr9:139311612 chr9:139311610 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_3626 0 0 1 0 1 PMPCA chr9:139311666 5'GT 139311666 Upstream 57bp
1664 chr4 672747 672747 1 + G A SKCM 672749 + 672729 672769 41 CCTGACCTTGGTCCCCAGGCATTCACACTCATGGATCAGAA CCTGACCTTGGTCCCCAGACATTCACACTCATGGATCAGAA < 41bp 0.600579382930622 0.814250253478287 NA NA prediction 0.42734174109533 Functional Gain - MYL5 ENSG00000215375 CDS Human protein_coding chr4:672749 chr4:672747 nonsynonymous SNV 0.228 1 19 hm6Am_associated_SNPs_3628 0 0 0 1 2 MYL5 chr4:672747 3'AG 672747 Downstream 1bp
1665 chr4 672747 672747 1 + G A SKCM 672749 + 672729 672769 41 CCTGACCTTGGTCCCCAGGCATTCACACTCATGGATCAGAA CCTGACCTTGGTCCCCAGACATTCACACTCATGGATCAGAA < 41bp 0.600579382930622 0.814250253478287 NA NA prediction 0.42734174109533 Functional Gain - MYL5 ENSG00000215375 CDS Human protein_coding chr4:672749 chr4:672747 nonsynonymous SNV 0.228 1 19 hm6Am_associated_SNPs_3628 0 0 0 1 2 MYL5 chr4:672822 5'GT 672822 Upstream 76bp
1666 chr5 141488599 141488599 1 + G A rs566265381 141488601 + 141488581 141488621 41 CTGCGGCAGCCGGTACCAGCAGGTAAGCGGCGCCCGACTCC CTGCGGCAGCCGGTACCAACAGGTAAGCGGCGCCCGACTCC < 41bp 0.575414184159247 0.789012452252467 NA NA prediction 0.427196536186439 Functional Gain - NDFIP1 ENSG00000131507 CDS Human protein_coding chr5:141488601 chr5:141488599 synonymous SNV . 0 19 hm6Am_associated_SNPs_3632 0 0 1 0 1 NDFIP1 chr5:141488602 5'GT 141488602 Upstream 4bp
1667 chr3 52740292 52740292 1 + G A rs140030572 52740294 + 52740274 52740314 41 TCTGAGCTCGCTGCCCACGCAGATGGTGAGGGCGCAACCCG TCTGAGCTCGCTGCCCACACAGATGGTGAGGGCGCAACCCG < 41bp 0.455207123172307 0.713501196009376 NA NA prediction 0.427002392018752 Functional Gain - SPCS1 ENSG00000114902 CDS Human protein_coding chr3:52740294 chr3:52740292 synonymous SNV . 0 19 hm6Am_associated_SNPs_3636 0 0 1 0 1 SPCS1 chr3:52740298 5'GT 52740298 Upstream 7bp
1668 chr1 210001468 210001468 1 + G C GBM 210001467 + 210001447 210001487 41 CAACACCCTAACTAAAAAGCAGAAGAAACATCTTCGAGATT CAACACCCTAACTAAAAAGCACAAGAAACATCTTCGAGATT < 41bp 0.573089023699833 0.786453166222948 NA NA prediction 0.426728285046231 Functional Gain - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210001467 chr1:210001468 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_3643 0 0 1 0 1 DIEXF chr1:210001515 5'GT 210001515 Upstream 48bp
1669 chr15 28991195 28991195 1 + G C rs557087997 28991194 + 28991174 28991214 41 CCTGGGCCACAGCAATTCCCAGGTTGGAAAAACTTAAGCTA CCTGGGCCACAGCAATTCCCACGTTGGAAAAACTTAAGCTA < 41bp 0.530921549742355 0.744175362904213 NA NA prediction 0.426507626323716 Functional Gain - WHAMMP2 ENSG00000248334 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28991194 chr15:28991195 . . 0 22 hm6Am_associated_SNPs_3646 0 0 0 1 1 WHAMMP2 chr15:28991126 3'AG 28991126 Downstream 70bp
1670 chr17 47869258 47869258 1 + G A UCEC 47869260 + 47869240 47869280 41 TATTACAGAGGAATGCAGGCAGTAGTTCAGATGGAACCGAA TATTACAGAGGAATGCAGACAGTAGTTCAGATGGAACCGAA < 41bp 0.488427364495286 0.71320232521668 NA NA prediction 0.426404650433359 Functional Gain - KAT7 ENSG00000136504 CDS Human protein_coding chr17:47869260 chr17:47869258 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_3648 0 0 1 0 1 KAT7 chr17:47869248 3'AG 47869248 Downstream 11bp
1671 chr1 142618949 142618949 1 + G T rs548800964 142618951 + 142618931 142618971 41 GGGAGCAGACGCGTGGGCGCATCGCGGGCGGGCAGGGCCTG GGGAGCAGACGCGTGGGCTCATCGCGGGCGGGCAGGGCCTG < 41bp 0.709912955171399 0.923100513650376 NA NA prediction 0.426375116957955 Functional Gain - NONE;ANKRD20A12P ENSG00000230880 ncRNA_intronic Human other chr1:142618951 chr1:142618949 . . 0 19 hm6Am_associated_SNPs_3650 0 0 0 0 1 NONE;ANKRD20A12P chr1:142618979 5'GT 142618979 Upstream 31bp
1672 chr17 42800344 42800344 1 + G A UCEC 42800346 + 42800326 42800366 41 ACTTGGATCTGCCTGCTGGCAAGAATCTCCAGTTTTTGACG ACTTGGATCTGCCTGCTGACAAGAATCTCCAGTTTTTGACG < 41bp 0.487932430635919 0.71312811755601 NA NA prediction 0.42625623511202 Functional Gain - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42800346 chr17:42800344 nonsynonymous SNV 0.999 2 19 hm6Am_associated_SNPs_3652 0 0 1 1 2 DBF4B chr17:42800248 3'AG 42800248 Downstream 97bp
1673 chr17 42800344 42800344 1 + G A UCEC 42800346 + 42800326 42800366 41 ACTTGGATCTGCCTGCTGGCAAGAATCTCCAGTTTTTGACG ACTTGGATCTGCCTGCTGACAAGAATCTCCAGTTTTTGACG < 41bp 0.487932430635919 0.71312811755601 NA NA prediction 0.42625623511202 Functional Gain - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42800346 chr17:42800344 nonsynonymous SNV 0.999 2 19 hm6Am_associated_SNPs_3652 0 0 1 1 2 DBF4B chr17:42800390 5'GT 42800390 Upstream 47bp
1674 chr17 1933453 1933453 1 + G A rs371007597 1933455 + 1933435 1933475 41 CTTTTTAGTACCACATGCGCAGGCAGGTGATGGCGGCGCTG CTTTTTAGTACCACATGCACAGGCAGGTGATGGCGGCGCTG < 41bp 0.45485818152972 0.713100812525393 NA NA prediction 0.426201625050787 Functional Gain - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1933455 chr17:1933453 nonsynonymous SNV 0.060 1 19 hm6Am_associated_SNPs_3653 0 0 1 0 1 DPH1 chr17:1933524 5'GT 1933524 Upstream 72bp
1675 chr6 3002453 3002453 1 + G A rs541904065 3002455 + 3002435 3002475 41 CAAACAACATGATTTCGGGCAATCACTTTGGGAATCAGGAT CAAACAACATGATTTCGGACAATCACTTTGGGAATCAGGAT < 41bp 0.482424252366136 0.713077609391071 NA NA prediction 0.426155218782143 Functional Gain - NQO2 ENSG00000124588 UTR5 Human protein_coding chr6:3002455 chr6:3002453 . . 0 19 hm6Am_associated_SNPs_3656 0 0 1 0 1 NQO2 chr6:3002520 5'GT 3002520 Upstream 68bp
1676 chr5 468695 468695 1 + G A rs191669241 468697 + 468677 468717 41 AGAGATGAGACACCAGCTGCACCCAGCAAGCCCTGTCCCCA AGAGATGAGACACCAGCTACACCCAGCAAGCCCTGTCCCCA < 41bp 0.600979121104267 0.814048119501337 NA NA prediction 0.426137996794141 Functional Gain - EXOC3;PP7080 ENSG00000180104 UTR3 Human protein_coding chr5:468697 chr5:468695 . . 0 19 hm6Am_associated_SNPs_3657 0 0 1 0 1 EXOC3;PP7080 chr5:468724 5'GT 468724 Upstream 30bp
1677 chr1 114522207 114522207 1 + G C COAD 114522206 + 114522186 114522226 41 GGGACCCCTCCAAGGACAGCAGCACCACCTTGTGGAGTACA GGGACCCCTCCAAGGACAGCACCACCACCTTGTGGAGTACA < 41bp 0.469311454146169 0.71300888976025 NA NA prediction 0.4260177795205 Functional Gain - OLFML3 ENSG00000116774 CDS Human protein_coding chr1:114522206 chr1:114522207 nonsynonymous SNV 1.000 2 22 hm6Am_associated_SNPs_3658 0 0 0 0 1 OLFML3 chr1:114522252 5'GT 114522252 Upstream 46bp
1678 chr11 65726408 65726408 1 + G A rs568120263 65726410 + 65726390 65726430 41 GGAGCTGCAAGGCATCCAGCACAGGGTGCAGGCCCGGCCCT GGAGCTGCAAGGCATCCAACACAGGGTGCAGGCCCGGCCCT < 41bp 0.612605542153537 0.825562936838442 NA NA prediction 0.42591478936981 Functional Gain - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65726410 chr11:65726408 unknown . 0 19 hm6Am_associated_SNPs_3659 0 0 0 0 2 TSGA10IP chr11:65726354 3'AG 65726354 Downstream 55bp
1679 chr11 65726408 65726408 1 + G A rs568120263 65726410 + 65726390 65726430 41 GGAGCTGCAAGGCATCCAGCACAGGGTGCAGGCCCGGCCCT GGAGCTGCAAGGCATCCAACACAGGGTGCAGGCCCGGCCCT < 41bp 0.612605542153537 0.825562936838442 NA NA prediction 0.42591478936981 Functional Gain - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65726410 chr11:65726408 unknown . 0 19 hm6Am_associated_SNPs_3659 0 0 0 0 2 TSGA10IP chr11:65726453 5'GT 65726453 Upstream 46bp
1680 chr6 50786607 50786607 1 + G T LUAD 50786609 + 50786589 50786629 41 TCTGCTCCTCACATGAATGCACTCACCTCCTAGAGACCAGG TCTGCTCCTCACATGAATTCACTCACCTCCTAGAGACCAGG < 41bp 0.729132060360704 0.942045617439974 NA NA prediction 0.425827114158541 Functional Gain - TFAP2B ENSG00000008196 CDS Human protein_coding chr6:50786609 chr6:50786607 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_3661 0 0 0 0 1 TFAP2B chr6:50786685 5'GT 50786685 Upstream 79bp
1681 chr18 55104151 55104151 1 + G C COAD 55104150 + 55104130 55104170 41 GCTTCAGGAGCCCGAGTTCCAGCGCATGTCCGCCTTACGCC GCTTCAGGAGCCCGAGTTCCACCGCATGTCCGCCTTACGCC < 41bp 0.574708060175371 0.787536679646406 NA NA prediction 0.42565723894207 Functional Gain - ONECUT2 ENSG00000119547 CDS Human protein_coding chr18:55104150 chr18:55104151 nonsynonymous SNV 1.000 3 22 hm6Am_associated_SNPs_3666 0 0 0 0 1 ONECUT2 chr18:55104176 5'GT 55104176 Upstream 26bp
1682 chr20 44036992 44036992 1 + G T LUAD 44036990 + 44036970 44037010 41 GAGGTGTCCAGGCCGGAGCCAGGGGCCCCACTGTTGGGATG GAGGTGTCCAGGCCGGAGCCAGTGGCCCCACTGTTGGGATG < 41bp 0.497989487799516 0.712809759115068 NA NA prediction 0.425619518230136 Functional Gain - DBNDD2 ENSG00000244274 CDS Human protein_coding chr20:44036990 chr20:44036992 nonsynonymous SNV 0.017 1 23 hm6Am_associated_SNPs_3667 0 0 0 0 1 DBNDD2 chr20:44036973 3'AG 44036973 Downstream 20bp
1683 chr3 136664460 136664460 1 + G C COAD 136664459 + 136664439 136664479 41 AAAAGAAAACCTAGTGTGCCAGATTCTGCATCTCCTGCTGA AAAAGAAAACCTAGTGTGCCACATTCTGCATCTCCTGCTGA < 41bp 0.441923236995022 0.712789998100652 NA NA prediction 0.425579996201303 Functional Gain - NCK1 ENSG00000158092 CDS Human protein_coding chr3:136664459 chr3:136664460 nonsynonymous SNV 1.000 3 22 hm6Am_associated_SNPs_3668 0 0 1 0 1 NCK1 chr3:136664425 3'AG 136664425 Downstream 36bp
1684 chr2 220439446 220439446 1 + G C BLCA 220439445 + 220439425 220439465 41 GTGAGGACAAGTCAGCTGCCAGAGGGCTGGCCCAGGAGGCT GTGAGGACAAGTCAGCTGCCACAGGGCTGGCCCAGGAGGCT < 41bp 0.604958416575438 0.817741006523845 NA NA prediction 0.425565179896815 Functional Gain - INHA ENSG00000123999 CDS Human protein_coding chr2:220439445 chr2:220439446 nonsynonymous SNV 0.002 1 22 hm6Am_associated_SNPs_3669 0 0 1 0 1 INHA chr2:220439416 3'AG 220439416 Downstream 31bp
1685 chr6 32411145 32411145 1 + G A UCEC 32411147 + 32411127 32411167 41 GGGAAGACCACCTTTTCCGCAAGTTCCACTATCTCCCCTTC GGGAAGACCACCTTTTCCACAAGTTCCACTATCTCCCCTTC < 41bp 0.590681828045679 0.80319215314227 NA NA prediction 0.425020650193181 Functional Gain - HLA-DRA ENSG00000204287 CDS Human protein_coding chr6:32411147 chr6:32411145 nonsynonymous SNV 0.998 3 19 hm6Am_associated_SNPs_3677 0 0 0 0 1 HLA-DRA chr6:32411243 5'GT 32411243 Upstream 99bp
1686 chr8 146054913 146054913 1 + G A COAD 146054915 + 146054895 146054935 41 CTTCTCTCGGGAGGAGTGGCAGTGTCTGGACCCTGGCCAGA CTTCTCTCGGGAGGAGTGACAGTGTCTGGACCCTGGCCAGA < 41bp 0.621088688395049 0.833591904596023 NA NA prediction 0.425006432401947 Functional Gain - ZNF7 ENSG00000147789 CDS Human protein_coding chr8:146054915 chr8:146054913 stopgain 0.996 0 19 hm6Am_associated_SNPs_3679 0 0 1 0 3 ZNF7 chr8:146054830 3'AG 146054830 Downstream 84bp
1687 chr8 146054913 146054913 1 + G A COAD 146054915 + 146054895 146054935 41 CTTCTCTCGGGAGGAGTGGCAGTGTCTGGACCCTGGCCAGA CTTCTCTCGGGAGGAGTGACAGTGTCTGGACCCTGGCCAGA < 41bp 0.621088688395049 0.833591904596023 NA NA prediction 0.425006432401947 Functional Gain - ZNF7 ENSG00000147789 CDS Human protein_coding chr8:146054915 chr8:146054913 stopgain 0.996 0 19 hm6Am_associated_SNPs_3679 0 0 1 0 3 ZNF7 chr8:146054863 3'AG 146054863 Downstream 51bp
1688 chr8 146054913 146054913 1 + G A COAD 146054915 + 146054895 146054935 41 CTTCTCTCGGGAGGAGTGGCAGTGTCTGGACCCTGGCCAGA CTTCTCTCGGGAGGAGTGACAGTGTCTGGACCCTGGCCAGA < 41bp 0.621088688395049 0.833591904596023 NA NA prediction 0.425006432401947 Functional Gain - ZNF7 ENSG00000147789 CDS Human protein_coding chr8:146054915 chr8:146054913 stopgain 0.996 0 19 hm6Am_associated_SNPs_3679 0 0 1 0 3 ZNF7 chr8:146054989 5'GT 146054989 Upstream 77bp
1689 chr3 126737303 126737303 1 + G T LUAD 126737305 + 126737285 126737325 41 AGTCACGAGATGCTGACCGCACACTCAAGCGGCTGCAGCTC AGTCACGAGATGCTGACCTCACACTCAAGCGGCTGCAGCTC < 41bp 0.299306397882448 0.712405301278903 NA NA prediction 0.424810602557806 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126737305 chr3:126737303 nonsynonymous SNV 0.946 1 19 hm6Am_associated_SNPs_3681 0 0 1 0 1 PLXNA1 chr3:126737371 5'GT 126737371 Upstream 69bp
1690 chr7 150815345 150815345 1 + G A LAML 150815347 + 150815327 150815367 41 TCGACGACAGCAGAGCCCGCAAGCTCTCCACAGATCTGAAG TCGACGACAGCAGAGCCCACAAGCTCTCCACAGATCTGAAG < 41bp 0.605976247298798 0.818340780044327 NA NA prediction 0.424729065491057 Functional Gain - AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150815347 chr7:150815345 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_3684 0 0 1 0 2 AGAP3 chr7:150815297 3'AG 150815297 Downstream 49bp
1691 chr7 150815345 150815345 1 + G A LAML 150815347 + 150815327 150815367 41 TCGACGACAGCAGAGCCCGCAAGCTCTCCACAGATCTGAAG TCGACGACAGCAGAGCCCACAAGCTCTCCACAGATCTGAAG < 41bp 0.605976247298798 0.818340780044327 NA NA prediction 0.424729065491057 Functional Gain - AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150815347 chr7:150815345 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_3684 0 0 1 0 2 AGAP3 chr7:150815431 5'GT 150815431 Upstream 87bp
1692 chr19 51298351 51298351 1 + G C CESC 51298350 + 51298330 51298370 41 TAGCTGTGCTGGTGGCACTCAGCTTGGGGCTGGGCCTGCTG TAGCTGTGCTGGTGGCACTCACCTTGGGGCTGGGCCTGCTG < 41bp 0.587882138122831 0.800212425390333 NA NA prediction 0.424660574535004 Functional Gain - ACPT ENSG00000142513 CDS Human protein_coding chr19:51298350 chr19:51298351 nonsynonymous SNV 0.040 0 22 hm6Am_associated_SNPs_3687 0 0 0 0 1 ACPT chr19:51298300 3'AG 51298300 Downstream 52bp
1693 chr11 1096350 1096350 1 + G A COAD 1096352 + 1096332 1096372 41 CACGGGCTGGGGCGACCCGCACTATGTCACCTTCGACGGAC CACGGGCTGGGGCGACCCACACTATGTCACCTTCGACGGAC < 41bp 0.605153765542637 0.817448979809337 NA NA prediction 0.4245904285334 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1096352 chr11:1096350 synonymous SNV . 0 19 hm6Am_associated_SNPs_3688 0 0 0 0 1 MUC2 chr11:1096325 3'AG 1096325 Downstream 26bp
1694 chr20 61669465 61669465 1 + G A rs149215703 61669467 + 61669447 61669487 41 CCCATGGGTGGATGGACCGCATTTTGTCCTCCATTCATCTG CCCATGGGTGGATGGACCACATTTTGTCCTCCATTCATCTG < 41bp 0.587053042622991 0.799232799114401 NA NA prediction 0.424359512982819 Functional Gain - LINC01056 ENSG00000237119 ncRNA_exonic Human lincRNA chr20:61669467 chr20:61669465 . . 0 19 hm6Am_associated_SNPs_3694 0 0 0 0 1 LINC01056 chr20:61669537 5'GT 61669537 Upstream 73bp
1695 chr17 17030129 17030129 1 + G A rs140002644 17030131 + 17030111 17030151 41 TCTGACGCCTGAGAAGGAGCATTTCATCCGGGCGGAGACCA TCTGACGCCTGAGAAGGAACATTTCATCCGGGCGGAGACCA < 41bp 0.45558852197457 0.712119705298868 NA NA prediction 0.424239410597737 Functional Gain - MPRIP ENSG00000133030 CDS Human protein_coding chr17:17030131 chr17:17030129 synonymous SNV . 0 19 hm6Am_associated_SNPs_3696 0 0 0 0 1 MPRIP chr17:17030167 5'GT 17030167 Upstream 39bp
1696 chr8 10383193 10383193 1 + G A LUAD 10383195 + 10383175 10383215 41 CTGGAGTGGCTATCCTAGGCAGGGCTAGGGGAGCCCACCGC CTGGAGTGGCTATCCTAGACAGGGCTAGGGGAGCCCACCGC < 41bp 0.616279991402236 0.828363409197129 NA NA prediction 0.424166835589786 Functional Gain - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10383195 chr8:10383193 nonsynonymous SNV 0.001 1 19 hm6Am_associated_SNPs_3698 0 0 0 0 1 PRSS55 chr8:10383249 5'GT 10383249 Upstream 57bp
1697 chr21 45736185 45736185 1 + G A UCEC 45736187 + 45736167 45736207 41 CTGAGGGTGCCATTGACCGCAACGGGAAGCCCATCTCGTCC CTGAGGGTGCCATTGACCACAACGGGAAGCCCATCTCGTCC < 41bp 0.449370599998369 0.712027426538192 NA NA prediction 0.424054853076384 Functional Gain - PFKL ENSG00000141959 CDS Human protein_coding chr21:45736187 chr21:45736185 nonsynonymous SNV 0.076 2 19 hm6Am_associated_SNPs_3700 0 0 1 0 2 PFKL chr21:45736127 3'AG 45736127 Downstream 59bp
1698 chr21 45736185 45736185 1 + G A UCEC 45736187 + 45736167 45736207 41 CTGAGGGTGCCATTGACCGCAACGGGAAGCCCATCTCGTCC CTGAGGGTGCCATTGACCACAACGGGAAGCCCATCTCGTCC < 41bp 0.449370599998369 0.712027426538192 NA NA prediction 0.424054853076384 Functional Gain - PFKL ENSG00000141959 CDS Human protein_coding chr21:45736187 chr21:45736185 nonsynonymous SNV 0.076 2 19 hm6Am_associated_SNPs_3700 0 0 1 0 2 PFKL chr21:45736222 5'GT 45736222 Upstream 38bp
1699 chr3 190373709 190373709 1 + G C ESCA 190373708 + 190373688 190373728 41 AGCAGTTTTTGATTTCATTCAGAGAAGCAGAAGGATGATTG AGCAGTTTTTGATTTCATTCACAGAAGCAGAAGGATGATTG < 41bp 0.491664329795154 0.711957695971149 NA NA prediction 0.423915391942299 Functional Gain - IL1RAP ENSG00000196083 CDS Human protein_coding chr3:190373708 chr3:190373709 nonsynonymous SNV 0.999 3 22 hm6Am_associated_SNPs_3703 0 0 0 0 1 IL1RAP chr3:190373678 3'AG 190373678 Downstream 32bp
1700 chr14 73727926 73727926 1 + G C rs2242616 73727925 + 73727905 73727945 41 CAGTGAGTGCCGGGGCTCCCAGTTTGGCTGTTGCTATGACA CAGTGAGTGCCGGGGCTCCCACTTTGGCTGTTGCTATGACA < 41bp 0.463259095024018 0.711939532686958 NA NA prediction 0.423879065373916 Functional Gain - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73727925 chr14:73727926 nonsynonymous SNV 0.932 1 22 hm6Am_associated_SNPs_3704 0 0 0 0 2 PAPLN chr14:73727864 3'AG 73727864 Downstream 63bp
1701 chr14 73727926 73727926 1 + G C rs2242616 73727925 + 73727905 73727945 41 CAGTGAGTGCCGGGGCTCCCAGTTTGGCTGTTGCTATGACA CAGTGAGTGCCGGGGCTCCCACTTTGGCTGTTGCTATGACA < 41bp 0.463259095024018 0.711939532686958 NA NA prediction 0.423879065373916 Functional Gain - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73727925 chr14:73727926 nonsynonymous SNV 0.932 1 22 hm6Am_associated_SNPs_3704 0 0 0 0 2 PAPLN chr14:73728002 5'GT 73728002 Upstream 77bp
1702 chr7 100028729 100028729 1 + G A CESC 100028731 + 100028711 100028751 41 CTTCCTCCTCCCGACATCGCAAACGTCGCAGGACTTCCAGC CTTCCTCCTCCCGACATCACAAACGTCGCAGGACTTCCAGC < 41bp 0.453311304304146 0.711875730854457 NA NA prediction 0.423751461708915 Functional Gain - MEPCE ENSG00000146834 CDS Human protein_coding chr7:100028731 chr7:100028729 nonsynonymous SNV 0.999 3 19 hm6Am_associated_SNPs_3705 0 0 1 0 1 MEPCE chr7:100028653 3'AG 100028653 Downstream 77bp
1703 chr2 96078714 96078714 1 + G A rs181052098 96078716 + 96078696 96078736 41 GGTGGTGTGATGGCTCCTGCACAGGCCCTGCACATAGGATG GGTGGTGTGATGGCTCCTACACAGGCCCTGCACATAGGATG < 41bp 0.60516760509606 0.816982755626216 NA NA prediction 0.423630301060312 Functional Gain - FAHD2A ENSG00000115042 UTR3 Human protein_coding chr2:96078716 chr2:96078714 . . 0 19 hm6Am_associated_SNPs_3706 0 0 0 0 1 FAHD2A chr2:96078643 3'AG 96078643 Downstream 72bp
1704 chr3 49715033 49715033 1 + G C rs141087407 49715032 + 49715012 49715052 41 TGGTATACCAAGGTTACCTCAGTGGTGGTAGATGTTGTGCC TGGTATACCAAGGTTACCTCACTGGTGGTAGATGTTGTGCC < 41bp 0.45400355304137 0.711611267516485 NA NA prediction 0.423222535032969 Functional Gain - APEH ENSG00000164062 CDS Human protein_coding chr3:49715032 chr3:49715033 nonsynonymous SNV 0.977 0 22 hm6Am_associated_SNPs_3716 0 0 1 0 2 APEH chr3:49715006 3'AG 49715006 Downstream 28bp
1705 chr3 49715033 49715033 1 + G C rs141087407 49715032 + 49715012 49715052 41 TGGTATACCAAGGTTACCTCAGTGGTGGTAGATGTTGTGCC TGGTATACCAAGGTTACCTCACTGGTGGTAGATGTTGTGCC < 41bp 0.45400355304137 0.711611267516485 NA NA prediction 0.423222535032969 Functional Gain - APEH ENSG00000164062 CDS Human protein_coding chr3:49715032 chr3:49715033 nonsynonymous SNV 0.977 0 22 hm6Am_associated_SNPs_3716 0 0 1 0 2 APEH chr3:49715066 5'GT 49715066 Upstream 34bp
1706 chr12 97158873 97158873 1 + G T LUAD 97158875 + 97158855 97158895 41 GTCAGTGAAGCTGTGCTGGCAATTAACTTACTTATTGGAAA GTCAGTGAAGCTGTGCTGTCAATTAACTTACTTATTGGAAA < 41bp 0.312847382028657 0.711586932402698 NA NA prediction 0.423173864805397 Functional Gain - CFAP54 ENSG00000188596 CDS Human protein_coding chr12:97158875 chr12:97158873 nonsynonymous SNV 0.421 0 19 hm6Am_associated_SNPs_3719 0 0 0 0 1 CFAP54 chr12:97158855 3'AG 97158855 Downstream 19bp
1707 chr3 122545705 122545705 1 + G A COAD 122545707 + 122545687 122545727 41 CCAACTGTAATGAATGCAGCACCATTTCTCTCTACGACGTG CCAACTGTAATGAATGCAACACCATTTCTCTCTACGACGTG < 41bp 0.451686396835057 0.711572022625141 NA NA prediction 0.423144045250282 Functional Gain - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122545707 chr3:122545705 nonsynonymous SNV 0.986 1 19 hm6Am_associated_SNPs_3720 0 0 0 0 1 DIRC2 chr3:122545647 3'AG 122545647 Downstream 59bp
1708 chr19 7615223 7615223 1 + G A COAD 7615225 + 7615205 7615245 41 TGTGGTGCTGAGTGCGGCGCACACGGTGGCAGCCAGGATGT TGTGGTGCTGAGTGCGGCACACACGGTGGCAGCCAGGATGT < 41bp 0.451165844601093 0.711510052333671 NA NA prediction 0.423020104667342 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7615225 chr19:7615223 synonymous SNV . 0 19 hm6Am_associated_SNPs_3723 0 0 0 0 2 PNPLA6 chr19:7615184 3'AG 7615184 Downstream 40bp
1709 chr19 7615223 7615223 1 + G A COAD 7615225 + 7615205 7615245 41 TGTGGTGCTGAGTGCGGCGCACACGGTGGCAGCCAGGATGT TGTGGTGCTGAGTGCGGCACACACGGTGGCAGCCAGGATGT < 41bp 0.451165844601093 0.711510052333671 NA NA prediction 0.423020104667342 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7615225 chr19:7615223 synonymous SNV . 0 19 hm6Am_associated_SNPs_3723 0 0 0 0 2 PNPLA6 chr19:7615315 5'GT 7615315 Upstream 93bp
1710 chr1 155178735 155178735 1 - C T GBM 155178733 - 155178713 155178753 41 CGAACCCCTGAAGGCGCGGCAGGCTCTGGAGAGCGGGGTCT CGAACCCCTGAAGGCGCGACAGGCTCTGGAGAGCGGGGTCT < 41bp 0.617552409638982 0.829020494838092 NA NA prediction 0.42293617039822 Functional Gain - MTX1 ENSG00000173171 CDS Human protein_coding chr1:155178733 chr1:155178735 nonsynonymous SNV 0.001 1 19 hm6Am_associated_SNPs_3726 0 0 0 0 1 MTX1 chr1:155178697 5'GT 155178697 Upstream 39bp
1711 chr19 13928082 13928082 1 + G A HNSC 13928084 + 13928064 13928104 41 CACCGAAGGATGGGTGGGGCACCCCCTGGACCCCATTGGCT CACCGAAGGATGGGTGGGACACCCCCTGGACCCCATTGGCT < 41bp 0.449660143551319 0.711454619363186 NA NA prediction 0.422909238726372 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13928084 chr19:13928082 synonymous SNV . 0 19 hm6Am_associated_SNPs_3727 0 0 0 0 2 ZSWIM4 chr19:13928030 3'AG 13928030 Downstream 53bp
1712 chr19 13928082 13928082 1 + G A HNSC 13928084 + 13928064 13928104 41 CACCGAAGGATGGGTGGGGCACCCCCTGGACCCCATTGGCT CACCGAAGGATGGGTGGGACACCCCCTGGACCCCATTGGCT < 41bp 0.449660143551319 0.711454619363186 NA NA prediction 0.422909238726372 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13928084 chr19:13928082 synonymous SNV . 0 19 hm6Am_associated_SNPs_3727 0 0 0 0 2 ZSWIM4 chr19:13928167 5'GT 13928167 Upstream 86bp
1713 chr21 47716133 47716133 1 + G C LUAD 47716132 + 47716112 47716152 41 TTCACACACGGCACGGAGGCAGAGTGGCAGCAGGTAAGGAG TTCACACACGGCACGGAGGCACAGTGGCAGCAGGTAAGGAG < 41bp 0.522401679194491 0.733823969085128 NA NA prediction 0.422844579781273 Functional Gain - YBEY ENSG00000182362 CDS Human protein_coding chr21:47716132 chr21:47716133 nonsynonymous SNV 0.086 1 22 hm6Am_associated_SNPs_3728 0 0 1 0 2 YBEY chr21:47716076 3'AG 47716076 Downstream 58bp
1714 chr21 47716133 47716133 1 + G C LUAD 47716132 + 47716112 47716152 41 TTCACACACGGCACGGAGGCAGAGTGGCAGCAGGTAAGGAG TTCACACACGGCACGGAGGCACAGTGGCAGCAGGTAAGGAG < 41bp 0.522401679194491 0.733823969085128 NA NA prediction 0.422844579781273 Functional Gain - YBEY ENSG00000182362 CDS Human protein_coding chr21:47716132 chr21:47716133 nonsynonymous SNV 0.086 1 22 hm6Am_associated_SNPs_3728 0 0 1 0 2 YBEY chr21:47716144 5'GT 47716144 Upstream 12bp
1715 chr19 2337458 2337458 1 + G A rs187922038 2337460 + 2337440 2337480 41 AGTCTTTCCTGCAGCTGCGCAACTGGACGGCCTCCCTGCTC AGTCTTTCCTGCAGCTGCACAACTGGACGGCCTCCCTGCTC < 41bp 0.452754783159144 0.711352983949491 NA NA prediction 0.422705967898981 Functional Gain - SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2337460 chr19:2337458 . 0.048 1 19 hm6Am_associated_SNPs_3730 0 0 1 0 1 SPPL2B chr19:2337442 3'AG 2337442 Downstream 17bp
1716 chr11 69458645 69458645 1 + G A UCEC 69458647 + 69458627 69458667 41 CTCAAGTGGAACCTGGCCGCAATGACCCCGCACGATTTCAT CTCAAGTGGAACCTGGCCACAATGACCCCGCACGATTTCAT < 41bp 0.460771339582513 0.711332621990678 NA NA prediction 0.422665243981356 Functional Gain - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69458647 chr11:69458645 nonsynonymous SNV 0.214 3 19 hm6Am_associated_SNPs_3731 0 0 1 0 1 CCND1 chr11:69458600 3'AG 69458600 Downstream 46bp
1717 chr2 204281636 204281636 1 + G C BLCA 204281635 + 204281615 204281655 41 CCTGATACGTTCTTAGTTTCAGATACACCACCTCCACCGCC CCTGATACGTTCTTAGTTTCACATACACCACCTCCACCGCC < 41bp 0.471884797983212 0.711328791570234 NA NA prediction 0.422657583140469 Functional Gain - ABI2 ENSG00000138443 CDS Human protein_coding chr2:204281635 chr2:204281636 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_3732 0 0 1 0 1 ABI2 chr2:204281631 3'AG 204281631 Downstream 6bp
1718 chr12 53497948 53497948 1 + G A PAAD 53497950 + 53497930 53497970 41 CACAGGAAACACTGAGACGCACAGAGCCCCGGACTTGGTAC CACAGGAAACACTGAGACACACAGAGCCCCGGACTTGGTAC < 41bp 0.450648238947416 0.711284359015389 NA NA prediction 0.422568718030778 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53497950 chr12:53497948 synonymous SNV . 0 19 hm6Am_associated_SNPs_3733 0 0 1 0 2 SOAT2 chr12:53497935 3'AG 53497935 Downstream 14bp
1719 chr12 53497948 53497948 1 + G A PAAD 53497950 + 53497930 53497970 41 CACAGGAAACACTGAGACGCACAGAGCCCCGGACTTGGTAC CACAGGAAACACTGAGACACACAGAGCCCCGGACTTGGTAC < 41bp 0.450648238947416 0.711284359015389 NA NA prediction 0.422568718030778 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53497950 chr12:53497948 synonymous SNV . 0 19 hm6Am_associated_SNPs_3733 0 0 1 0 2 SOAT2 chr12:53497990 5'GT 53497990 Upstream 43bp
1720 chr2 102968039 102968039 1 + G A BLCA 102968041 + 102968021 102968061 41 CATACGAAAGAGCAGGCGGCACATTTTCATCCTGACCCCTC CATACGAAAGAGCAGGCGACACATTTTCATCCTGACCCCTC < 41bp 0.622687361884261 0.833971628485759 NA NA prediction 0.422568533202997 Functional Gain - IL1RL1 ENSG00000115602 CDS Human protein_coding chr2:102968041 chr2:102968039 synonymous SNV . 0 19 hm6Am_associated_SNPs_3734 0 0 0 0 1 IL1RL1 chr2:102967996 3'AG 102967996 Downstream 44bp
1721 chr2 219288504 219288504 1 + G T UCEC 219288502 + 219288482 219288522 41 CTCCCCCAGGCTCACTCACCATGACCAAGCTGAGCGCCCAA CTCCCCCAGGCTCACTCACCATTACCAAGCTGAGCGCCCAA < 41bp 0.496627476221955 0.711177159639573 NA NA prediction 0.422354319279147 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219288502 chr2:219288504 nonsynonymous SNV 0.943 2 23 hm6Am_associated_SNPs_3737 0 0 0 0 1 VIL1 chr2:219288576 5'GT 219288576 Upstream 73bp
1722 chr19 44679718 44679718 1 + G T HNSC 44679720 + 44679700 44679740 41 AGAAGAGCTTTCTTGTTGGCAAATCTGGCAACAAATTGCAA AGAAGAGCTTTCTTGTTGTCAAATCTGGCAACAAATTGCAA < 41bp 0.619212914318594 0.830350655591352 NA NA prediction 0.422275482545514 Functional Gain - ZNF226 ENSG00000167380 CDS Human protein_coding chr19:44679720 chr19:44679718 nonsynonymous SNV 0.574 0 19 hm6Am_associated_SNPs_3739 0 0 1 0 1 ZNF226 chr19:44679651 3'AG 44679651 Downstream 68bp
1723 chr20 60738545 60738545 1 + G A ACC 60738547 + 60738527 60738567 41 GCAGCAGGCGGCCACGTCGCACTACAGCTCGGCGCAGGGCG GCAGCAGGCGGCCACGTCACACTACAGCTCGGCGCAGGGCG < 41bp 0.625988734704653 0.837107240433399 NA NA prediction 0.422237011457492 Functional Gain - SS18L1 ENSG00000184402 CDS Human protein_coding chr20:60738547 chr20:60738545 synonymous SNV . 0 19 hm6Am_associated_SNPs_3740 0 0 1 0 1 SS18L1 chr20:60738514 3'AG 60738514 Downstream 32bp
1724 chr1 154293707 154293707 1 + G A GBM 154293709 + 154293689 154293729 41 CTGGCCCGGCAGTGCCTGGCAGAGTTTCTGGGTGTGTTTGT CTGGCCCGGCAGTGCCTGACAGAGTTTCTGGGTGTGTTTGT < 41bp 0.614576244752257 0.8256716628864 NA NA prediction 0.422190836268287 Functional Gain - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154293709 chr1:154293707 nonsynonymous SNV 1.000 5 19 hm6Am_associated_SNPs_3741 0 0 0 0 1 AQP10 chr1:154293736 5'GT 154293736 Upstream 30bp
1725 chr11 124745514 124745514 1 + G T UCEC 124745516 + 124745496 124745536 41 TGGGGGGTGATGGCAACAGCAGTATCACTGTGTCCTGGGAA TGGGGGGTGATGGCAACATCAGTATCACTGTGTCCTGGGAA < 41bp 0.282190150451985 0.711076067114022 NA NA prediction 0.422152134228044 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124745516 chr11:124745514 nonsynonymous SNV 0.999 1 19 hm6Am_associated_SNPs_3742 0 0 0 0 2 ROBO3 chr11:124745460 3'AG 124745460 Downstream 55bp
1726 chr11 124745514 124745514 1 + G T UCEC 124745516 + 124745496 124745536 41 TGGGGGGTGATGGCAACAGCAGTATCACTGTGTCCTGGGAA TGGGGGGTGATGGCAACATCAGTATCACTGTGTCCTGGGAA < 41bp 0.282190150451985 0.711076067114022 NA NA prediction 0.422152134228044 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124745516 chr11:124745514 nonsynonymous SNV 0.999 1 19 hm6Am_associated_SNPs_3742 0 0 0 0 2 ROBO3 chr11:124745581 5'GT 124745581 Upstream 68bp
1727 chr20 43936836 43936836 1 + G C rs115744323 43936835 + 43936815 43936855 41 CTGAGCCTGCAGGACAGATCAGAGATGCAGCTGCAGAGCGA CTGAGCCTGCAGGACAGATCACAGATGCAGCTGCAGAGCGA < 41bp 0.451843266811046 0.71104790591863 NA NA prediction 0.422095811837261 Functional Gain - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43936835 chr20:43936836 nonsynonymous SNV 0.997 1 22 hm6Am_associated_SNPs_3744 0 0 0 0 2 RBPJL chr20:43936783 3'AG 43936783 Downstream 54bp
1728 chr20 43936836 43936836 1 + G C rs115744323 43936835 + 43936815 43936855 41 CTGAGCCTGCAGGACAGATCAGAGATGCAGCTGCAGAGCGA CTGAGCCTGCAGGACAGATCACAGATGCAGCTGCAGAGCGA < 41bp 0.451843266811046 0.71104790591863 NA NA prediction 0.422095811837261 Functional Gain - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43936835 chr20:43936836 nonsynonymous SNV 0.997 1 22 hm6Am_associated_SNPs_3744 0 0 0 0 2 RBPJL chr20:43936891 5'GT 43936891 Upstream 56bp
1729 chr7 100198418 100198418 1 - C T COAD 100198416 - 100198396 100198436 41 TCTGTGCGGCCATCAGGGGCATCCACCCTACGATCTCCTTC TCTGTGCGGCCATCAGGGACATCCACCCTACGATCTCCTTC < 41bp 0.617439412052116 0.828435934891389 NA NA prediction 0.421993045678547 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100198416 chr7:100198418 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3748 0 0 0 0 2 FBXO24 chr7:100198346 5'GT 100198346 Upstream 73bp
1730 chr7 100198418 100198418 1 - C T COAD 100198416 - 100198396 100198436 41 TCTGTGCGGCCATCAGGGGCATCCACCCTACGATCTCCTTC TCTGTGCGGCCATCAGGGACATCCACCCTACGATCTCCTTC < 41bp 0.617439412052116 0.828435934891389 NA NA prediction 0.421993045678547 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100198416 chr7:100198418 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3748 0 0 0 0 2 FBXO24 chr7:100198475 3'AG 100198475 Downstream 58bp
1731 chr20 42583817 42583817 1 + G A rs565336946 42583819 + 42583799 42583839 41 GGCTCCACTGAAGCTATGGCATAATTTGCAGAATTTGCACT GGCTCCACTGAAGCTATGACATAATTTGCAGAATTTGCACT < 41bp 0.530211002813865 0.74120235166714 NA NA prediction 0.42198269770655 Functional Gain - TOX2 ENSG00000124191 UTR5 Human protein_coding chr20:42583819 chr20:42583817 . . 0 19 hm6Am_associated_SNPs_3749 0 0 0 0 2 TOX2 chr20:42583788 3'AG 42583788 Downstream 30bp
1732 chr20 42583817 42583817 1 + G A rs565336946 42583819 + 42583799 42583839 41 GGCTCCACTGAAGCTATGGCATAATTTGCAGAATTTGCACT GGCTCCACTGAAGCTATGACATAATTTGCAGAATTTGCACT < 41bp 0.530211002813865 0.74120235166714 NA NA prediction 0.42198269770655 Functional Gain - TOX2 ENSG00000124191 UTR5 Human protein_coding chr20:42583819 chr20:42583817 . . 0 19 hm6Am_associated_SNPs_3749 0 0 0 0 2 TOX2 chr20:42583912 5'GT 42583912 Upstream 96bp
1733 chr1 178499300 178499300 1 + G C CESC 178499299 + 178499279 178499319 41 CCTTGACGCATGTGGTCATCAGAGAAACATGAGGGTGAGTC CCTTGACGCATGTGGTCATCACAGAAACATGAGGGTGAGTC < 41bp 0.53727444921849 0.748241213908488 NA NA prediction 0.421933529379998 Functional Gain - TEX35;C1orf220 ENSG00000240021 CDS Human protein_coding chr1:178499299 chr1:178499300 nonsynonymous SNV . 0 22 hm6Am_associated_SNPs_3751 0 0 0 0 1 TEX35;C1orf220 chr1:178499256 3'AG 178499256 Downstream 45bp
1734 chr15 74912508 74912508 1 + G A COAD 74912510 + 74912490 74912530 41 GGGGGCCATACCGGACCCGCAAGCATGCCCACCACTGCCAC GGGGGCCATACCGGACCCACAAGCATGCCCACCACTGCCAC < 41bp 0.452531564953811 0.710962339514572 NA NA prediction 0.421924679029145 Functional Gain - CLK3 ENSG00000179335 CDS Human protein_coding chr15:74912510 chr15:74912508 nonsynonymous SNV 0.993 2 19 hm6Am_associated_SNPs_3752 0 0 1 0 1 CLK3 chr15:74912566 5'GT 74912566 Upstream 59bp
1735 chrX 49021225 49021225 1 + G A COAD 49021227 + 49021207 49021247 41 TGGTTAGAGACATGTAACGCACCTCCCCAATTGATCCAGGG TGGTTAGAGACATGTAACACACCTCCCCAATTGATCCAGGG < 41bp 0.451478824030175 0.710953556657353 NA NA prediction 0.421907113314707 Functional Gain - MAGIX ENSG00000017621 CDS Human other chrX:49021227 chrX:49021225 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_3753 0 0 0 0 1 MAGIX chrX:49021201 3'AG 49021201 Downstream 25bp
1736 chr6 167585684 167585684 1 + G C CESC 167585683 + 167585663 167585703 41 CCCAAGGAGGGCACCCACCCAGAGGACCCGTGCCCGGGAGC CCCAAGGAGGGCACCCACCCACAGGACCCGTGCCCGGGAGC < 41bp 0.577279755089238 0.788216350218235 NA NA prediction 0.421873190257994 Functional Gain - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167585683 chr6:167585684 nonsynonymous SNV 0.001 3 22 hm6Am_associated_SNPs_3754 0 0 0 0 2 TCP10L2 chr6:167585632 3'AG 167585632 Downstream 53bp
1737 chr6 167585684 167585684 1 + G C CESC 167585683 + 167585663 167585703 41 CCCAAGGAGGGCACCCACCCAGAGGACCCGTGCCCGGGAGC CCCAAGGAGGGCACCCACCCACAGGACCCGTGCCCGGGAGC < 41bp 0.577279755089238 0.788216350218235 NA NA prediction 0.421873190257994 Functional Gain - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167585683 chr6:167585684 nonsynonymous SNV 0.001 3 22 hm6Am_associated_SNPs_3754 0 0 0 0 2 TCP10L2 chr6:167585776 5'GT 167585776 Upstream 93bp
1738 chr14 105349128 105349128 1 + G T SARC 105349130 + 105349110 105349150 41 GGGGTGAGGACGATGGTAGCACGCTGCCTGACGCCCAGCGC GGGGTGAGGACGATGGTATCACGCTGCCTGACGCCCAGCGC < 41bp 0.289886155131975 0.710898988081246 NA NA prediction 0.421797976162493 Functional Gain - CEP170B ENSG00000099814 CDS Human protein_coding chr14:105349130 chr14:105349128 nonsynonymous SNV 0.044 0 19 hm6Am_associated_SNPs_3758 0 0 1 0 2 CEP170B chr14:105349065 3'AG 105349065 Downstream 64bp
1739 chr14 105349128 105349128 1 + G T SARC 105349130 + 105349110 105349150 41 GGGGTGAGGACGATGGTAGCACGCTGCCTGACGCCCAGCGC GGGGTGAGGACGATGGTATCACGCTGCCTGACGCCCAGCGC < 41bp 0.289886155131975 0.710898988081246 NA NA prediction 0.421797976162493 Functional Gain - CEP170B ENSG00000099814 CDS Human protein_coding chr14:105349130 chr14:105349128 nonsynonymous SNV 0.044 0 19 hm6Am_associated_SNPs_3758 0 0 1 0 2 CEP170B chr14:105349169 5'GT 105349169 Upstream 42bp
1740 chrX 153172069 153172069 1 + G C LUAD 153172068 + 153172048 153172088 41 TTCAGCAGCAGCGTGTCCTCAGAGCTGCGAAGCTTGCTCTG TTCAGCAGCAGCGTGTCCTCACAGCTGCGAAGCTTGCTCTG < 41bp 0.574735880465999 0.78562024799863 NA NA prediction 0.421768735065261 Functional Gain - AVPR2 ENSG00000126895 CDS Human protein_coding chrX:153172068 chrX:153172069 nonsynonymous SNV 0.987 3 22 hm6Am_associated_SNPs_3760 0 0 0 0 1 AVPR2 chrX:153171977 3'AG 153171977 Downstream 93bp
1741 chr1 244214711 244214711 1 + G C rs564305542 244214710 + 244214690 244214730 41 ACCTGGAGCCAGCAGGACTCAGAGGAAAGGACTTAATCAGG ACCTGGAGCCAGCAGGACTCACAGGAAAGGACTTAATCAGG < 41bp 0.598528157896079 0.809385106359421 NA NA prediction 0.421713896926684 Functional Gain - ZBTB18 ENSG00000179456 UTR5 Human protein_coding chr1:244214710 chr1:244214711 . . 0 22 hm6Am_associated_SNPs_3761 0 0 1 0 1 ZBTB18 chr1:244214746 5'GT 244214746 Upstream 36bp
1742 chr11 66034372 66034372 1 + G A COAD 66034374 + 66034354 66034394 41 CAGGTCTCTCTGACAGCCGCACTCTCAGCTCCAGCTCCATG CAGGTCTCTCTGACAGCCACACTCTCAGCTCCAGCTCCATG < 41bp 0.453752365969372 0.710808930388392 NA NA prediction 0.421617860776784 Functional Gain - KLC2 ENSG00000174996 CDS Human protein_coding chr11:66034374 chr11:66034372 nonsynonymous SNV 1.000 5 19 hm6Am_associated_SNPs_3763 0 0 1 2 1 KLC2 chr11:66034344 3'AG 66034344 Downstream 29bp
1743 chr14 100151073 100151073 1 + G A rs577803413 100151075 + 100151055 100151095 41 CTGCTGGGCGCCCACCGCGCACAGCTGGGCCCCACAAACGT CTGCTGGGCGCCCACCGCACACAGCTGGGCCCCACAAACGT < 41bp 0.627422448004484 0.838147701291424 NA NA prediction 0.421450506573879 Functional Gain - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100151075 chr14:100151073 unknown . 0 19 hm6Am_associated_SNPs_3765 0 0 0 0 1 CYP46A1 chr14:100151118 5'GT 100151118 Upstream 46bp
1744 chr9 126128573 126128573 1 + G A BLCA 126128575 + 126128555 126128595 41 CGGGAGGTGCTGGAGTGCGCATCGGCGCCCTGCGAGCACAA CGGGAGGTGCTGGAGTGCACATCGGCGCCCTGCGAGCACAA < 41bp 0.457298414391331 0.710666651413621 NA NA prediction 0.421333302827241 Functional Gain - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126128575 chr9:126128573 nonsynonymous SNV 0.935 3 19 hm6Am_associated_SNPs_3769 0 0 0 0 2 CRB2 chr9:126128506 3'AG 126128506 Downstream 68bp
1745 chr9 126128573 126128573 1 + G A BLCA 126128575 + 126128555 126128595 41 CGGGAGGTGCTGGAGTGCGCATCGGCGCCCTGCGAGCACAA CGGGAGGTGCTGGAGTGCACATCGGCGCCCTGCGAGCACAA < 41bp 0.457298414391331 0.710666651413621 NA NA prediction 0.421333302827241 Functional Gain - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126128575 chr9:126128573 nonsynonymous SNV 0.935 3 19 hm6Am_associated_SNPs_3769 0 0 0 0 2 CRB2 chr9:126128645 5'GT 126128645 Upstream 73bp
1746 chr20 30458964 30458964 1 + G A UCEC 30458966 + 30458946 30458986 41 AAGCTCTGCTGGGACCAGGCACAACTGCCATTAGGTGCCCC AAGCTCTGCTGGGACCAGACACAACTGCCATTAGGTGCCCC < 41bp 0.614240796235608 0.824894557241287 NA NA prediction 0.421307522011359 Functional Gain - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30458966 chr20:30458964 nonsynonymous SNV 0.011 0 19 hm6Am_associated_SNPs_3772 0 0 0 0 2 TTLL9 chr20:30458925 3'AG 30458925 Downstream 40bp
1747 chr20 30458964 30458964 1 + G A UCEC 30458966 + 30458946 30458986 41 AAGCTCTGCTGGGACCAGGCACAACTGCCATTAGGTGCCCC AAGCTCTGCTGGGACCAGACACAACTGCCATTAGGTGCCCC < 41bp 0.614240796235608 0.824894557241287 NA NA prediction 0.421307522011359 Functional Gain - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30458966 chr20:30458964 nonsynonymous SNV 0.011 0 19 hm6Am_associated_SNPs_3772 0 0 0 0 2 TTLL9 chr20:30458998 5'GT 30458998 Upstream 35bp
1748 chr16 50830242 50830242 1 + G C LUSC 50830241 + 50830221 50830261 41 CCTCTGTGCCATAGGTGGTCAGAATGGCTTCAACATTCCTC CCTCTGTGCCATAGGTGGTCACAATGGCTTCAACATTCCTC < 41bp 0.461083140694315 0.710602028840116 NA NA prediction 0.421204057680233 Functional Gain - CYLD ENSG00000083799 CDS Human protein_coding chr16:50830241 chr16:50830242 nonsynonymous SNV 0.977 3 22 hm6Am_associated_SNPs_3774 0 0 0 0 1 CYLD chr16:50830235 3'AG 50830235 Downstream 8bp
1749 chr19 13930251 13930251 1 + G A LAML 13930253 + 13930233 13930273 41 GCCCGCTACCTGTTCACCGCACTGCTGCCTCATGACCCGGA GCCCGCTACCTGTTCACCACACTGCTGCCTCATGACCCGGA < 41bp 0.447721640462007 0.71051028855597 NA NA prediction 0.421020577111941 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930253 chr19:13930251 nonsynonymous SNV 0.889 0 19 hm6Am_associated_SNPs_3777 0 0 1 0 2 ZSWIM4 chr19:13930171 3'AG 13930171 Downstream 81bp
1750 chr19 13930251 13930251 1 + G A LAML 13930253 + 13930233 13930273 41 GCCCGCTACCTGTTCACCGCACTGCTGCCTCATGACCCGGA GCCCGCTACCTGTTCACCACACTGCTGCCTCATGACCCGGA < 41bp 0.447721640462007 0.71051028855597 NA NA prediction 0.421020577111941 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930253 chr19:13930251 nonsynonymous SNV 0.889 0 19 hm6Am_associated_SNPs_3777 0 0 1 0 2 ZSWIM4 chr19:13930306 5'GT 13930306 Upstream 56bp
1751 chr9 130911905 130911905 1 + G A BLCA 130911907 + 130911887 130911927 41 TCCCAGCCCCACCTCTGAGCAAGGTCCCTCTGCAGCAGAAC TCCCAGCCCCACCTCTGAACAAGGTCCCTCTGCAGCAGAAC < 41bp 0.613703345431643 0.824212371049581 NA NA prediction 0.421018051235876 Functional Gain - LCN2 ENSG00000148346 CDS Human protein_coding chr9:130911907 chr9:130911905 nonsynonymous SNV 0.033 0 19 hm6Am_associated_SNPs_3778 0 0 0 0 1 LCN2 chr9:130911942 5'GT 130911942 Upstream 38bp
1752 chr2 219738170 219738170 1 + G A COAD 219738172 + 219738152 219738192 41 CGGGATCATGCGCGCTGCGCACCTGCTGGCAGAAGCTGCCT CGGGATCATGCGCGCTGCACACCTGCTGGCAGAAGCTGCCT < 41bp 0.581701133749788 0.792064535703578 NA NA prediction 0.42072680390758 Functional Gain - WNT6 ENSG00000115596 CDS Human protein_coding chr2:219738172 chr2:219738170 nonsynonymous SNV 0.975 3 19 hm6Am_associated_SNPs_3784 0 0 0 0 1 WNT6 chr2:219738106 3'AG 219738106 Downstream 65bp
1753 chrX 144903310 144903310 1 + G C rs138082239 144903312 + 144903292 144903332 41 AGGGCATCCCCCCTGGAAGCAGCGTCTTATTTTACCTTGTT AGGGCATCCCCCCTGGAACCAGCGTCTTATTTTACCTTGTT < 41bp 0.438397284095094 0.710311949635125 NA NA prediction 0.42062389927025 Functional Gain - SLITRK2 ENSG00000185985 UTR5 Human protein_coding chrX:144903312 chrX:144903310 . . 0 19 hm6Am_associated_SNPs_3788 0 0 0 0 1 SLITRK2 chrX:144903402 5'GT 144903402 Upstream 93bp
1754 chr20 25255323 25255323 1 + G T UCEC 25255325 + 25255305 25255345 41 CTTCTACGGACGCGTGGAGCACACCCCCGACGGCGTGAAGT CTTCTACGGACGCGTGGATCACACCCCCGACGGCGTGAAGT < 41bp 0.282584688449955 0.710271658389025 NA NA prediction 0.420543316778049 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25255325 chr20:25255323 nonsynonymous SNV 0.882 2 19 hm6Am_associated_SNPs_3790 0 0 0 0 2 PYGB chr20:25255228 3'AG 25255228 Downstream 96bp
1755 chr20 25255323 25255323 1 + G T UCEC 25255325 + 25255305 25255345 41 CTTCTACGGACGCGTGGAGCACACCCCCGACGGCGTGAAGT CTTCTACGGACGCGTGGATCACACCCCCGACGGCGTGAAGT < 41bp 0.282584688449955 0.710271658389025 NA NA prediction 0.420543316778049 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25255325 chr20:25255323 nonsynonymous SNV 0.882 2 19 hm6Am_associated_SNPs_3790 0 0 0 0 2 PYGB chr20:25255359 5'GT 25255359 Upstream 37bp
1756 chr10 72434363 72434363 1 + G T LUAD 72434365 + 72434345 72434385 41 GTGTGACAGTGCCCTGCAGCACAGACTTTCGGGGACGCTTC GTGTGACAGTGCCCTGCATCACAGACTTTCGGGGACGCTTC < 41bp 0.283914379090995 0.710266794377147 NA NA prediction 0.420533588754294 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72434365 chr10:72434363 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_3791 0 0 0 0 1 ADAMTS14 chr10:72434312 3'AG 72434312 Downstream 52bp
1757 chr11 67077583 67077583 1 + G C LUAD 67077582 + 67077562 67077602 41 AAAGTGGGTGGGGTCTCCCCAGAGGAGCACCCAGCCCCTGA AAAGTGGGTGGGGTCTCCCCACAGGAGCACCCAGCCCCTGA < 41bp 0.462242167564365 0.710178245539249 NA NA prediction 0.420356491078498 Functional Gain - SSH3 ENSG00000172830 CDS Human protein_coding chr11:67077582 chr11:67077583 nonsynonymous SNV 0.989 2 22 hm6Am_associated_SNPs_3795 0 0 0 0 1 SSH3 chr11:67077537 3'AG 67077537 Downstream 47bp
1758 chr18 22208217 22208217 1 + G A rs339867 22208219 + 22208199 22208239 41 GATTTCCAAGGGAGCAGAGCATTAATAAGGTAAGATTTTAA GATTTCCAAGGGAGCAGAACATTAATAAGGTAAGATTTTAA < 41bp 0.558839975950473 0.768991253983689 NA NA prediction 0.420302556066431 Functional Gain - LINC01915 ENSG00000265485 ncRNA_exonic Human lincRNA chr18:22208219 chr18:22208217 . . 0 19 hm6Am_associated_SNPs_3796 0 0 0 0 1 LINC01915 chr18:22208227 5'GT 22208227 Upstream 11bp
1759 chr1 161681237 161681237 1 + G A rs144403707 161681239 + 161681219 161681259 41 CCTGGGATCCCAGAAACAGCATCTGTTGTGGCTATCACAGT CCTGGGATCCCAGAAACAACATCTGTTGTGGCTATCACAGT < 41bp 0.508614377739058 0.718733386228031 NA NA prediction 0.420238016977945 Functional Gain - FCRLA ENSG00000132185 CDS Human protein_coding chr1:161681239 chr1:161681237 nonsynonymous SNV 0.932 4 19 hm6Am_associated_SNPs_3798 0 0 0 0 1 FCRLA chr1:161681264 5'GT 161681264 Upstream 28bp
1760 chr11 3638635 3638635 1 + G A rs115215108 3638637 + 3638617 3638657 41 AGCTCAGGCGCCTTGCACGCAAGGAGCCTGAATTTAAGGTT AGCTCAGGCGCCTTGCACACAAGGAGCCTGAATTTAAGGTT < 41bp 0.594880434230596 0.80494725952146 NA NA prediction 0.420133650581728 Functional Gain - LOC101927708;TRPC2 ENSG00000182048 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3638637 chr11:3638635 . . 0 19 hm6Am_associated_SNPs_3800 0 0 0 0 1 LOC101927708;TRPC2 chr11:3638654 5'GT 3638654 Upstream 20bp
1761 chr10 71008250 71008250 1 + G C rs61756700 71008249 + 71008229 71008269 41 GATGTCCGCTTCCTCCTGTCAGAGAGTGGCAGCACCAAGGG GATGTCCGCTTCCTCCTGTCACAGAGTGGCAGCACCAAGGG < 41bp 0.605112741802913 0.814984442140718 NA NA prediction 0.419743400675611 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71008249 chr10:71008250 nonsynonymous SNV 0.997 3 22 hm6Am_associated_SNPs_3809 0 0 0 0 1 HKDC1 chr10:71008180 3'AG 71008180 Downstream 71bp
1762 chr15 25444432 25444432 1 + G A COAD 25444434 + 25444414 25444454 41 GAGCCTGGAGGAAGACTTGCATTGGGCCCAATGGACCCAGG GAGCCTGGAGGAAGACTTACATTGGGCCCAATGGACCCAGG < 41bp 0.463051543393576 0.709870850198488 NA NA prediction 0.419741700396976 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25444434 chr15:25444432 . . 0 19 hm6Am_associated_SNPs_3810 0 0 0 0 1 SNHG14 chr15:25444409 3'AG 25444409 Downstream 24bp
1763 chr12 75728645 75728645 1 + G A UCEC 75728647 + 75728627 75728667 41 CCCACAACGAATGGCGTGGCAAAGTCAACCCTCCCGCGGCC CCCACAACGAATGGCGTGACAAAGTCAACCCTCCCGCGGCC < 41bp 0.623063776363568 0.832833046141748 NA NA prediction 0.41953853955636 Functional Gain - GLIPR1L1 ENSG00000173401 CDS Human protein_coding chr12:75728647 chr12:75728645 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_3814 0 0 0 0 1 GLIPR1L1 chr12:75728682 5'GT 75728682 Upstream 38bp
1764 chr1 167971768 167971768 1 + G C SKCM 167971767 + 167971747 167971787 41 AGACTTCGTGGTGATTGGTCAGATACTGGACCCAGAGCAAG AGACTTCGTGGTGATTGGTCACATACTGGACCCAGAGCAAG < 41bp 0.437883037224138 0.709744745018727 NA NA prediction 0.419489490037453 Functional Gain - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:167971767 chr1:167971768 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_3816 0 0 1 0 2 DCAF6 chr1:167971720 3'AG 167971720 Downstream 49bp
1765 chr1 167971768 167971768 1 + G C SKCM 167971767 + 167971747 167971787 41 AGACTTCGTGGTGATTGGTCAGATACTGGACCCAGAGCAAG AGACTTCGTGGTGATTGGTCACATACTGGACCCAGAGCAAG < 41bp 0.437883037224138 0.709744745018727 NA NA prediction 0.419489490037453 Functional Gain - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:167971767 chr1:167971768 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_3816 0 0 1 0 2 DCAF6 chr1:167971813 5'GT 167971813 Upstream 46bp
1766 chr22 39353712 39353712 1 + G A rs554278400 39353714 + 39353694 39353734 41 CACATGGAAGCCAGCCCAGCATCCGGGCCCAGGTATGGGAA CACATGGAAGCCAGCCCAACATCCGGGCCCAGGTATGGGAA < 41bp 0.454634988330496 0.70972531892823 NA NA prediction 0.419450637856459 Functional Gain - APOBEC3A;APOBEC3A_B ENSG00000128383 CDS Human protein_coding chr22:39353714 chr22:39353712 nonsynonymous SNV 0.020 3 19 hm6Am_associated_SNPs_3817 0 0 0 0 1 APOBEC3A;APOBEC3A_B chr22:39353725 5'GT 39353725 Upstream 14bp
1767 chr16 28734551 28734551 1 + G A PAAD 28734553 + 28734533 28734573 41 GGACAAAGCTAAGAAGAAGCACGACAGGAAATCCAAGCGCC GGACAAAGCTAAGAAGAAACACGACAGGAAATCCAAGCGCC < 41bp 0.452624233782344 0.709668978278756 NA NA prediction 0.419337956557511 Functional Gain - EIF3C;EIF3CL ENSG00000184110 CDS Human protein_coding chr16:28734553 chr16:28734551 synonymous SNV . 0 19 hm6Am_associated_SNPs_3822 0 0 1 0 2 EIF3C;EIF3CL chr16:28734485 3'AG 28734485 Downstream 67bp
1768 chr16 28734551 28734551 1 + G A PAAD 28734553 + 28734533 28734573 41 GGACAAAGCTAAGAAGAAGCACGACAGGAAATCCAAGCGCC GGACAAAGCTAAGAAGAAACACGACAGGAAATCCAAGCGCC < 41bp 0.452624233782344 0.709668978278756 NA NA prediction 0.419337956557511 Functional Gain - EIF3C;EIF3CL ENSG00000184110 CDS Human protein_coding chr16:28734553 chr16:28734551 synonymous SNV . 0 19 hm6Am_associated_SNPs_3822 0 0 1 0 2 EIF3C;EIF3CL chr16:28734644 5'GT 28734644 Upstream 94bp
1769 chr8 95835775 95835775 1 + G T UCEC 95835777 + 95835757 95835797 41 TGTTGGAGAAACATCTGCGCAAGCCCTGCCCGGGTGAGCGC TGTTGGAGAAACATCTGCTCAAGCCCTGCCCGGGTGAGCGC < 41bp 0.732056482933045 0.941640296476041 NA NA prediction 0.419167627085993 Functional Gain - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95835777 chr8:95835775 nonsynonymous SNV 0.998 0 19 hm6Am_associated_SNPs_3824 0 0 1 0 1 INTS8 chr8:95835789 5'GT 95835789 Upstream 15bp
1770 chr11 118986773 118986773 1 + G T LIHC 118986775 + 118986755 118986795 41 TGAGTTTCCTGCGCAGCGGCACTAAGCTCATCTTCCGCCGG TGAGTTTCCTGCGCAGCGTCACTAAGCTCATCTTCCGCCGG < 41bp 0.301087859769733 0.709560747346315 NA NA prediction 0.41912149469263 Functional Gain - C2CD2L ENSG00000172375 CDS Human protein_coding chr11:118986775 chr11:118986773 nonsynonymous SNV 0.999 4 19 hm6Am_associated_SNPs_3826 0 0 1 0 1 C2CD2L chr11:118986755 3'AG 118986755 Downstream 19bp
1771 chr9 66554597 66554597 1 + G T UCEC 66554595 + 66554575 66554615 41 TGGCAGGCATTCAGATCTCCAAGAATAGAGGATTAGGAGAG TGGCAGGCATTCAGATCTCCAATAATAGAGGATTAGGAGAG < 41bp 0.497800336530533 0.709488318645235 NA NA prediction 0.41897663729047 Functional Gain - LOC728673 ENSG00000170161 ncRNA_exonic Human lincRNA chr9:66554595 chr9:66554597 . . 0 23 hm6Am_associated_SNPs_3827 0 0 0 1 1 LOC728673 chr9:66554528 3'AG 66554528 Downstream 70bp
1772 chr20 35506446 35506446 1 + G C BLCA 35506445 + 35506425 35506465 41 AGCCAGGTTTTGAGTGCCTCAGAGATTCGGCAGGTCTGGGC AGCCAGGTTTTGAGTGCCTCACAGATTCGGCAGGTCTGGGC < 41bp 0.45564269064568 0.709475807942963 NA NA prediction 0.418951615885925 Functional Gain - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35506445 chr20:35506446 nonsynonymous SNV 0.503 0 22 hm6Am_associated_SNPs_3828 0 0 0 0 1 TLDC2 chr20:35506457 5'GT 35506457 Upstream 12bp
1773 chr1 26752814 26752814 1 + G C HNSC 26752813 + 26752793 26752833 41 CAAGAAGTGCCACTTCTGCCAGAGCATCAGCCATATGGTAG CAAGAAGTGCCACTTCTGCCACAGCATCAGCCATATGGTAG < 41bp 0.615736381349045 0.825045660054013 NA NA prediction 0.418618557409937 Functional Gain - LIN28A ENSG00000131914 CDS Human protein_coding chr1:26752813 chr1:26752814 nonsynonymous SNV 1.000 3 22 hm6Am_associated_SNPs_3838 0 0 1 2 1 LIN28A chr1:26752733 3'AG 26752733 Downstream 82bp
1774 chr7 130027714 130027714 1 + G T UCEC 130027712 + 130027692 130027732 41 GGACCTACAGCCAGGGCATCAAGTACTCCTTCACCTTCGAG GGACCTACAGCCAGGGCATCAATTACTCCTTCACCTTCGAG < 41bp 0.497187296923049 0.709282600340468 NA NA prediction 0.418565200680937 Functional Gain - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130027712 chr7:130027714 nonsynonymous SNV 1.000 4 23 hm6Am_associated_SNPs_3839 0 0 0 0 1 CPA1 chr7:130027665 3'AG 130027665 Downstream 50bp
1775 chr8 145165035 145165035 1 + G A rs143515279 145165037 + 145165017 145165057 41 GTACCTGCCAGTGGTGGGGCACACGGACGGCACGCTGTCGG GTACCTGCCAGTGGTGGGACACACGGACGGCACGCTGTCGG < 41bp 0.61454105069457 0.823816066393911 NA NA prediction 0.418550031398682 Functional Gain - WDR97 ENSG00000179698 CDS Human protein_coding chr8:145165037 chr8:145165035 synonymous SNV . 0 19 hm6Am_associated_SNPs_3840 0 0 1 0 1 WDR97 chr8:145165017 3'AG 145165017 Downstream 19bp
1776 chr21 42769609 42769609 1 + G T LUAD 42769607 + 42769587 42769627 41 GACTTACCACTGAACTCATCATGCATATCCAAGTGAGCCAC GACTTACCACTGAACTCATCATTCATATCCAAGTGAGCCAC < 41bp 0.527199534920502 0.736459275886166 NA NA prediction 0.418519481931327 Functional Gain - MX2 ENSG00000183486 CDS Human protein_coding chr21:42769607 chr21:42769609 nonsynonymous SNV 0.003 0 23 hm6Am_associated_SNPs_3841 0 0 0 0 1 MX2 chr21:42769618 5'GT 42769618 Upstream 10bp
1777 chr8 146029097 146029097 1 + G A UCEC 146029099 + 146029079 146029119 41 TTGCCTGGCCCCCGACCAGCAGGCACTCTACAGGGACGTGA TTGCCTGGCCCCCGACCAACAGGCACTCTACAGGGACGTGA < 41bp 0.559848001628074 0.769056280432428 NA NA prediction 0.418416557608708 Functional Gain - ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146029099 chr8:146029097 synonymous SNV . 0 19 hm6Am_associated_SNPs_3844 0 0 0 0 2 ZNF517 chr8:146029026 3'AG 146029026 Downstream 72bp
1778 chr8 146029097 146029097 1 + G A UCEC 146029099 + 146029079 146029119 41 TTGCCTGGCCCCCGACCAGCAGGCACTCTACAGGGACGTGA TTGCCTGGCCCCCGACCAACAGGCACTCTACAGGGACGTGA < 41bp 0.559848001628074 0.769056280432428 NA NA prediction 0.418416557608708 Functional Gain - ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146029099 chr8:146029097 synonymous SNV . 0 19 hm6Am_associated_SNPs_3844 0 0 0 0 2 ZNF517 chr8:146029152 5'GT 146029152 Upstream 56bp
1779 chr15 94841904 94841904 1 + G A UCEC 94841906 + 94841886 94841926 41 GACGGGTGTCCAGCAACGGCATCTTTGATCTTCAGAAAACT GACGGGTGTCCAGCAACGACATCTTTGATCTTCAGAAAACT < 41bp 0.53220973482429 0.741382682268616 NA NA prediction 0.418345894888653 Functional Gain - MCTP2 ENSG00000140563 CDS Human protein_coding chr15:94841906 chr15:94841904 nonsynonymous SNV 0.003 0 19 hm6Am_associated_SNPs_3847 0 0 0 0 1 MCTP2 chr15:94841959 5'GT 94841959 Upstream 56bp
1780 chr16 30014976 30014976 1 + G T rs78008308 30014978 + 30014958 30014998 41 TTTCTCCATTCAGTGGCGGCATTGTGCGGAGAATGTGAGTG TTTCTCCATTCAGTGGCGTCATTGTGCGGAGAATGTGAGTG < 41bp 0.31378254136639 0.709058502914431 NA NA prediction 0.418117005828863 Functional Gain - INO80E ENSG00000169592 UTR3 Human protein_coding chr16:30014978 chr16:30014976 . . 0 19 hm6Am_associated_SNPs_3852 0 0 1 0 2 INO80E chr16:30014971 3'AG 30014971 Downstream 6bp
1781 chr16 30014976 30014976 1 + G T rs78008308 30014978 + 30014958 30014998 41 TTTCTCCATTCAGTGGCGGCATTGTGCGGAGAATGTGAGTG TTTCTCCATTCAGTGGCGTCATTGTGCGGAGAATGTGAGTG < 41bp 0.31378254136639 0.709058502914431 NA NA prediction 0.418117005828863 Functional Gain - INO80E ENSG00000169592 UTR3 Human protein_coding chr16:30014978 chr16:30014976 . . 0 19 hm6Am_associated_SNPs_3852 0 0 1 0 2 INO80E chr16:30014991 5'GT 30014991 Upstream 16bp
1782 chr20 34596376 34596376 1 + G T UCEC 34596374 + 34596354 34596394 41 CCTCAGGAGACACTCTCCCCAAGATGCTGGGCCCGAAGATC CCTCAGGAGACACTCTCCCCAATATGCTGGGCCCGAAGATC < 41bp 0.534963141167213 0.743994872059535 NA NA prediction 0.418063461784645 Functional Gain - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34596374 chr20:34596376 nonsynonymous SNV 0.085 2 23 hm6Am_associated_SNPs_3853 0 0 0 0 1 CNBD2 chr20:34596396 5'GT 34596396 Upstream 21bp
1783 chr17 48674229 48674229 1 + G A UCEC 48674231 + 48674211 48674251 41 TGGGCCCTGCGTCGCGCCGCACCAGCAGCAGCGGGTCGGCA TGGGCCCTGCGTCGCGCCACACCAGCAGCAGCGGGTCGGCA < 41bp 0.541358204592857 0.750330364590736 NA NA prediction 0.417944319995758 Functional Gain - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48674231 chr17:48674229 nonsynonymous SNV 0.893 4 19 hm6Am_associated_SNPs_3856 0 0 0 0 1 CACNA1G chr17:48674284 5'GT 48674284 Upstream 56bp
1784 chr1 110737251 110737251 1 + G A GBM 110737253 + 110737233 110737273 41 CTTCACTGAGGCCATGACGCACTTCCCCGCCTCCCCGTTCT CTTCACTGAGGCCATGACACACTTCCCCGCCTCCCCGTTCT < 41bp 0.444629607502174 0.70892189031253 NA NA prediction 0.417843780625059 Functional Gain - SLC6A17 ENSG00000197106 CDS Human protein_coding chr1:110737253 chr1:110737251 synonymous SNV . 0 19 hm6Am_associated_SNPs_3861 0 0 0 0 1 SLC6A17 chr1:110737201 3'AG 110737201 Downstream 51bp
1785 chr7 156974974 156974974 1 + G T UCEC 156974976 + 156974956 156974996 41 TCAAGAAAGAGTGGTGGAGCACCCTGGCTTTTCTATTTCGT TCAAGAAAGAGTGGTGGATCACCCTGGCTTTTCTATTTCGT < 41bp 0.296336513872482 0.708903511717769 NA NA prediction 0.417807023435537 Functional Gain - UBE3C ENSG00000009335 CDS Human protein_coding chr7:156974976 chr7:156974974 nonsynonymous SNV 0.006 1 19 hm6Am_associated_SNPs_3862 0 0 1 0 1 UBE3C chr7:156975022 5'GT 156975022 Upstream 49bp
1786 chr2 87140980 87140980 1 + G A BLCA 87140982 + 87140962 87141002 41 TTGGCGGTGCGATGAGGCGCAGCAAGGCCTACGGGGAGCGG TTGGCGGTGCGATGAGGCACAGCAAGGCCTACGGGGAGCGG < 41bp 0.553383523506696 0.762239178061624 NA NA prediction 0.417711309109857 Functional Gain - RGPD2 ENSG00000187627 CDS Human protein_coding chr2:87140982 chr2:87140980 nonsynonymous SNV . 1 19 hm6Am_associated_SNPs_3864 0 0 0 0 1 RGPD2 chr2:87141044 5'GT 87141044 Upstream 65bp
1787 chr19 13919658 13919658 1 + G C HNSC 13919657 + 13919637 13919677 41 TCCCTCCCGGCAGGTGCCCCAGACCCCACCGCCGGCGCAGG TCCCTCCCGGCAGGTGCCCCACACCCCACCGCCGGCGCAGG < 41bp 0.469838814114829 0.708846580001104 NA NA prediction 0.417693160002207 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13919657 chr19:13919658 nonsynonymous SNV 0.927 3 22 hm6Am_associated_SNPs_3867 0 0 0 0 1 ZSWIM4 chr19:13919650 3'AG 13919650 Downstream 9bp
1788 chr12 132636329 132636329 1 + G C rs531830608 132636328 + 132636308 132636348 41 TGGAGAGGAGGACCCAGCCCAGAGCCGGGCCTTGGAGAGCT TGGAGAGGAGGACCCAGCCCACAGCCGGGCCTTGGAGAGCT < 41bp 0.459725312725933 0.708720942430154 NA NA prediction 0.417441884860307 Functional Gain - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132636328 chr12:132636329 nonsynonymous SNV 0.715 1 22 hm6Am_associated_SNPs_3872 0 0 1 0 1 NOC4L chr12:132636365 5'GT 132636365 Upstream 37bp
1789 chr17 70117916 70117916 1 + G A COAD 70117918 + 70117898 70117938 41 GCTCGCGGACCAGTACCCGCACTTGCACAACGCCGAGCTCA GCTCGCGGACCAGTACCCACACTTGCACAACGCCGAGCTCA < 41bp 0.631042982496763 0.839747975764634 NA NA prediction 0.417409986535743 Functional Gain - SOX9 ENSG00000125398 CDS Human protein_coding chr17:70117918 chr17:70117916 synonymous SNV . 0 19 hm6Am_associated_SNPs_3873 0 0 1 0 1 SOX9 chr17:70117963 5'GT 70117963 Upstream 48bp
1790 chr6 17281950 17281950 1 + G A rs549672551 17281952 + 17281932 17281972 41 GGTGGTCATCACCGACCGGCAGACGGGCAAGTCCCGGGGCT GGTGGTCATCACCGACCGACAGACGGGCAAGTCCCGGGGCT < 41bp 0.633302798845792 0.841993448773088 NA NA prediction 0.417381299854593 Functional Gain - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17281952 chr6:17281950 synonymous SNV . 0 19 hm6Am_associated_SNPs_3874 0 0 0 0 1 RBM24 chr6:17281980 5'GT 17281980 Upstream 31bp
1791 chr2 88387472 88387472 1 + G T LUAD 88387470 + 88387450 88387490 41 CGTGGACGACTTGCAGAACCACGTGGAGCACTTTGGGGAGG CGTGGACGACTTGCAGAACCACTTGGAGCACTTTGGGGAGG < 41bp 0.504436839360352 0.712974220128372 NA NA prediction 0.417074761536041 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88387470 chr2:88387472 nonsynonymous SNV 1.000 1 23 hm6Am_associated_SNPs_3883 0 0 0 0 1 SMYD1 chr2:88387381 3'AG 88387381 Downstream 92bp
1792 chr15 72109946 72109946 1 + G A STAD 72109948 + 72109928 72109968 41 GGTTTATCACTGCGGAACGCATCGAGCTCCTCTTTTTCCGC GGTTTATCACTGCGGAACACATCGAGCTCCTCTTTTTCCGC < 41bp 0.60837766945729 0.816896081089651 NA NA prediction 0.417036823264721 Functional Gain - NR2E3 ENSG00000031544 ncRNA_exonic Human other chr15:72109948 chr15:72109946 . 0.961 1 19 hm6Am_associated_SNPs_3884 0 0 0 0 1 NR2E3 chr15:72109893 3'AG 72109893 Downstream 54bp
1793 chr21 35237536 35237536 1 + G A STAD 35237538 + 35237518 35237558 41 CCTGAGCGCACAGCTGCCGCACATGCAGCCCTACATCCGCT CCTGAGCGCACAGCTGCCACACATGCAGCCCTACATCCGCT < 41bp 0.547910140508925 0.756416641490338 NA NA prediction 0.417013001962826 Functional Gain - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35237538 chr21:35237536 synonymous SNV . 0 19 hm6Am_associated_SNPs_3885 0 0 0 0 1 ITSN1 chr21:35237455 3'AG 35237455 Downstream 82bp
1794 chr1 11728793 11728793 1 + G A rs144734810 11728795 + 11728775 11728815 41 CCTGCTGGAGCTGTTCACGCACGTGCCCGCCCGCCAGCTGC CCTGCTGGAGCTGTTCACACACGTGCCCGCCCGCCAGCTGC < 41bp 0.456243574709211 0.708427633304288 NA NA prediction 0.416855266608577 Functional Gain - FBXO6 ENSG00000116663 CDS Human protein_coding chr1:11728795 chr1:11728793 synonymous SNV . 0 19 hm6Am_associated_SNPs_3886 0 0 0 0 1 FBXO6 chr1:11728713 3'AG 11728713 Downstream 81bp
1795 chr6 117997216 117997216 1 + G A UCEC 117997218 + 117997198 117997238 41 TGTGGTGTATGGCCGTGGGCATCTCCTACATTAGCGTCTAC TGTGGTGTATGGCCGTGGACATCTCCTACATTAGCGTCTAC < 41bp 0.44805162107107 0.708404909368842 NA NA prediction 0.416809818737684 Functional Gain - NUS1 ENSG00000153989 CDS Human protein_coding chr6:117997218 chr6:117997216 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3887 0 0 1 0 1 NUS1 chr6:117997248 5'GT 117997248 Upstream 33bp
1796 chrX 153609287 153609287 1 + G A LUAD 153609289 + 153609269 153609309 41 TGCCTACCAGAGCATCACGCACTACCGCCCTGTTTCAGCCT TGCCTACCAGAGCATCACACACTACCGCCCTGTTTCAGCCT < 41bp 0.62346188197532 0.831750939936733 NA NA prediction 0.416578115922825 Functional Gain - EMD ENSG00000102119 CDS Human protein_coding chrX:153609289 chrX:153609287 synonymous SNV . 0 19 hm6Am_associated_SNPs_3892 3 0 1 0 1 EMD chrX:153609242 3'AG 153609242 Downstream 46bp
1797 chr16 1393394 1393394 1 + G A ACC 1393396 + 1393376 1393416 41 ATGGGCCGGGCCCCACAGGCACTGGCAGGTCAGCAGCCGCC ATGGGCCGGGCCCCACAGACACTGGCAGGTCAGCAGCCGCC < 41bp 0.447784088821322 0.708263778280858 NA NA prediction 0.416527556561716 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1393396 chr16:1393394 synonymous SNV . 0 19 hm6Am_associated_SNPs_3893 0 0 0 0 1 BAIAP3 chr16:1393394 3'AG 1393394 Downstream 1bp
1798 chr22 39811105 39811105 1 + G A SKCM 39811107 + 39811087 39811127 41 ACTCTGCTGATGGCAAGGGCACTGAGAGCCACCCGCCAGAG ACTCTGCTGATGGCAAGGACACTGAGAGCCACCCGCCAGAG < 41bp 0.441888300970284 0.708107596625941 NA NA prediction 0.416215193251882 Functional Gain - TAB1 ENSG00000100324 CDS Human protein_coding chr22:39811107 chr22:39811105 nonsynonymous SNV 0.998 1 19 hm6Am_associated_SNPs_3897 0 0 1 0 2 TAB1 chr22:39811011 3'AG 39811011 Downstream 95bp
1799 chr22 39811105 39811105 1 + G A SKCM 39811107 + 39811087 39811127 41 ACTCTGCTGATGGCAAGGGCACTGAGAGCCACCCGCCAGAG ACTCTGCTGATGGCAAGGACACTGAGAGCCACCCGCCAGAG < 41bp 0.441888300970284 0.708107596625941 NA NA prediction 0.416215193251882 Functional Gain - TAB1 ENSG00000100324 CDS Human protein_coding chr22:39811107 chr22:39811105 nonsynonymous SNV 0.998 1 19 hm6Am_associated_SNPs_3897 0 0 1 0 2 TAB1 chr22:39811147 5'GT 39811147 Upstream 43bp
1800 chr20 55100024 55100024 1 + G T UCEC 55100022 + 55100002 55100042 41 GAATCTACCAGAGCACACCCAAGGCTGGCTTGGGAGCAAAT GAATCTACCAGAGCACACCCAATGCTGGCTTGGGAGCAAAT < 41bp 0.50535959880205 0.713455180876121 NA NA prediction 0.416191164148141 Functional Gain - FAM209A ENSG00000124103 CDS Human protein_coding chr20:55100022 chr20:55100024 nonsynonymous SNV 0.130 3 23 hm6Am_associated_SNPs_3898 0 0 1 0 1 FAM209A chr20:55100113 5'GT 55100113 Upstream 90bp
1801 chr11 134180464 134180464 1 + G C BLCA 134180463 + 134180443 134180483 41 GACTGGCCCTGGTGTCTTGCAGACTATGATGCAGTGCTCAC GACTGGCCCTGGTGTCTTGCACACTATGATGCAGTGCTCAC < 41bp 0.531348876656768 0.739429514911622 NA NA prediction 0.416161276509708 Functional Gain - GLB1L3 ENSG00000166105 splicing Human protein_coding chr11:134180463 chr11:134180464 . 1.000 0 22 hm6Am_associated_SNPs_3899 0 0 0 0 1 GLB1L3 chr11:134180545 5'GT 134180545 Upstream 82bp
1802 chr2 109403311 109403311 1 + G C rs138848875 109403310 + 109403290 109403330 41 GGTCGTCAAGCCACCGGGGCAGGATTTAGTAGTGGAGAGTC GGTCGTCAAGCCACCGGGGCACGATTTAGTAGTGGAGAGTC < 41bp 0.534167853327219 0.742188046792778 NA NA prediction 0.416040386931117 Functional Gain - CCDC138 ENSG00000163006 CDS Human protein_coding chr2:109403310 chr2:109403311 nonsynonymous SNV 0.257 5 22 hm6Am_associated_SNPs_3900 0 0 1 0 1 CCDC138 chr2:109403371 5'GT 109403371 Upstream 61bp
1803 chr19 843609 843609 1 + G A rs367854995 843611 + 843591 843631 41 CTTCGTGCTGACGGCCGCGCACTGCCTGCGGGACATGTGAG CTTCGTGCTGACGGCCGCACACTGCCTGCGGGACATGTGAG < 41bp 0.621606643287956 0.829496426092825 NA NA prediction 0.415779565609737 Functional Gain - PRTN3 ENSG00000196415 CDS Human protein_coding chr19:843611 chr19:843609 synonymous SNV . 0 19 hm6Am_associated_SNPs_3902 0 0 0 0 1 PRTN3 chr19:843626 5'GT 843626 Upstream 18bp
1804 chr19 43858042 43858042 1 + G T LAML 43858044 + 43858024 43858064 41 CCAGTTTGGGACAGTTCAGCATGTGTGGAAGGTGTCCGACC CCAGTTTGGGACAGTTCATCATGTGTGGAAGGTGTCCGACC < 41bp 0.287560960040685 0.70786135722673 NA NA prediction 0.41572271445346 Functional Gain - CD177 ENSG00000204936 CDS Human protein_coding chr19:43858044 chr19:43858042 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_3905 0 0 0 0 1 CD177 chr19:43858005 3'AG 43858005 Downstream 38bp
1805 chr19 7506836 7506836 1 + G C LUSC 7506835 + 7506815 7506855 41 CTGAGGAGTGAGATTGAGTCAGACGGCCACGAGTTTGAAGC CTGAGGAGTGAGATTGAGTCACACGGCCACGAGTTTGAAGC < 41bp 0.602846763935786 0.810602438085467 NA NA prediction 0.415511348299363 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7506835 chr19:7506836 nonsynonymous SNV 0.026 3 22 hm6Am_associated_SNPs_3910 0 0 1 0 1 ARHGEF18 chr19:7506798 3'AG 7506798 Downstream 39bp
1806 chr20 45354891 45354891 1 + G T LUAD 45354893 + 45354873 45354913 41 CTGCCCGCTCGGGGGCATGCACTGCTGCGCTGGACCGCACT CTGCCCGCTCGGGGGCATTCACTGCTGCGCTGGACCGCACT < 41bp 0.284723051690475 0.707639897709833 NA NA prediction 0.415279795419666 Functional Gain - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45354893 chr20:45354891 nonsynonymous SNV 0.000 1 19 hm6Am_associated_SNPs_3912 0 0 0 0 1 SLC2A10 chr20:45354963 5'GT 45354963 Upstream 73bp
1807 chr16 24870543 24870543 1 + G A rs563215040 24870545 + 24870525 24870565 41 TGCTCAGGGTACTAGAACGCAGTGGTGGCAATCATAGCTCA TGCTCAGGGTACTAGAACACAGTGGTGGCAATCATAGCTCA < 41bp 0.500498655627042 0.708134760172141 NA NA prediction 0.415272209090198 Functional Gain - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24870545 chr16:24870543 synonymous SNV . 0 19 hm6Am_associated_SNPs_3914 0 0 0 0 2 SLC5A11 chr16:24870508 3'AG 24870508 Downstream 36bp
1808 chr16 24870543 24870543 1 + G A rs563215040 24870545 + 24870525 24870565 41 TGCTCAGGGTACTAGAACGCAGTGGTGGCAATCATAGCTCA TGCTCAGGGTACTAGAACACAGTGGTGGCAATCATAGCTCA < 41bp 0.500498655627042 0.708134760172141 NA NA prediction 0.415272209090198 Functional Gain - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24870545 chr16:24870543 synonymous SNV . 0 19 hm6Am_associated_SNPs_3914 0 0 0 0 2 SLC5A11 chr16:24870616 5'GT 24870616 Upstream 74bp
1809 chrX 129146599 129146599 1 + G T UCEC 129146601 + 129146581 129146621 41 AACGACAGGCGACTGCCAGCACTTTGGATCTCAGGAGTTTT AACGACAGGCGACTGCCATCACTTTGGATCTCAGGAGTTTT < 41bp 0.29260213770357 0.707605553067194 NA NA prediction 0.415211106134389 Functional Gain - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129146601 chrX:129146599 nonsynonymous SNV 0.997 3 19 hm6Am_associated_SNPs_3915 0 0 1 0 2 BCORL1 chrX:129146554 3'AG 129146554 Downstream 46bp
1810 chrX 129146599 129146599 1 + G T UCEC 129146601 + 129146581 129146621 41 AACGACAGGCGACTGCCAGCACTTTGGATCTCAGGAGTTTT AACGACAGGCGACTGCCATCACTTTGGATCTCAGGAGTTTT < 41bp 0.29260213770357 0.707605553067194 NA NA prediction 0.415211106134389 Functional Gain - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129146601 chrX:129146599 nonsynonymous SNV 0.997 3 19 hm6Am_associated_SNPs_3915 0 0 1 0 2 BCORL1 chrX:129146644 5'GT 129146644 Upstream 46bp
1811 chr2 62132970 62132970 1 + G A UCEC 62132972 + 62132952 62132992 41 GAGTTCCGCCCCTTTCTGGCAAAGATGAGGGGGATTCTTAA GAGTTCCGCCCCTTTCTGACAAAGATGAGGGGGATTCTTAA < 41bp 0.446576105885335 0.707501296293793 NA NA prediction 0.415002592587586 Functional Gain - COMMD1 ENSG00000173163 CDS Human protein_coding chr2:62132972 chr2:62132970 nonsynonymous SNV 0.646 0 19 hm6Am_associated_SNPs_3920 0 0 1 0 1 COMMD1 chr2:62132993 5'GT 62132993 Upstream 24bp
1812 chr3 63808994 63808994 1 + G C rs548626468 63808993 + 63808973 63809013 41 TCCCTAAAGAGGAATCATCCAGTGATAGTGACATGGGATTT TCCCTAAAGAGGAATCATCCACTGATAGTGACATGGGATTT < 41bp 0.448955995467478 0.707440866294425 NA NA prediction 0.41488173258885 Functional Gain - C3orf49 ENSG00000163632 CDS Human protein_coding chr3:63808993 chr3:63808994 nonsynonymous SNV 0.753 1 22 hm6Am_associated_SNPs_3922 0 0 0 0 1 C3orf49 chr3:63808926 3'AG 63808926 Downstream 69bp
1813 chr8 136470172 136470172 1 + G A COAD 136470174 + 136470154 136470194 41 CCTGGACCCCTCCTTCACGCACGCCCTGCGCCTGGTGAACC CCTGGACCCCTCCTTCACACACGCCCTGCGCCTGGTGAACC < 41bp 0.444508600924351 0.707397221136893 NA NA prediction 0.414794442273787 Functional Gain - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136470174 chr8:136470172 synonymous SNV . 0 19 hm6Am_associated_SNPs_3924 0 0 0 0 1 KHDRBS3 chr8:136470197 5'GT 136470197 Upstream 26bp
1814 chr14 101200756 101200756 1 + G A UCEC 101200758 + 101200738 101200778 41 CGGGGGCACCTGCCTGCAGCACACCCAGGTGAGCTACGAGT CGGGGGCACCTGCCTGCAACACACCCAGGTGAGCTACGAGT < 41bp 0.442421513143599 0.707374560059461 NA NA prediction 0.414749120118921 Functional Gain - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101200758 chr14:101200756 synonymous SNV . 0 19 hm6Am_associated_SNPs_3926 0 0 1 0 1 DLK1 chr14:101200765 5'GT 101200765 Upstream 10bp
1815 chr10 102546746 102546746 1 + G A CESC 102546748 + 102546728 102546768 41 TAGAGGAGGTGGAGGTTTGCATCTGGTCTGGACTTTAAGAG TAGAGGAGGTGGAGGTTTACATCTGGTCTGGACTTTAAGAG < 41bp 0.622239434716635 0.829575948839939 NA NA prediction 0.414673028246608 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102546748 chr10:102546746 synonymous SNV . 0 19 hm6Am_associated_SNPs_3927 0 0 0 0 2 PAX2 chr10:102546700 3'AG 102546700 Downstream 47bp
1816 chr10 102546746 102546746 1 + G A CESC 102546748 + 102546728 102546768 41 TAGAGGAGGTGGAGGTTTGCATCTGGTCTGGACTTTAAGAG TAGAGGAGGTGGAGGTTTACATCTGGTCTGGACTTTAAGAG < 41bp 0.622239434716635 0.829575948839939 NA NA prediction 0.414673028246608 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102546748 chr10:102546746 synonymous SNV . 0 19 hm6Am_associated_SNPs_3927 0 0 0 0 2 PAX2 chr10:102546768 5'GT 102546768 Upstream 23bp
1817 chr20 36975018 36975018 1 + G T LUSC 36975016 + 36974996 36975036 41 CCAACCCCGGCTTGGTCGCCAGGATCACCGACAAGGGACTG CCAACCCCGGCTTGGTCGCCAGTATCACCGACAAGGGACTG < 41bp 0.541238629640735 0.74855377276528 NA NA prediction 0.414630286249091 Functional Gain - LBP ENSG00000129988 CDS Human protein_coding chr20:36975016 chr20:36975018 nonsynonymous SNV 0.997 4 23 hm6Am_associated_SNPs_3928 0 0 0 0 1 LBP chr20:36975043 5'GT 36975043 Upstream 26bp
1818 chr3 119328383 119328383 1 + G T LUSC 119328381 + 119328361 119328401 41 TGGGGGCCCACGTTGGGGGCATGGTGGGACAGCTCTTCGGA TGGGGGCCCACGTTGGGGGCATTGTGGGACAGCTCTTCGGA < 41bp 0.522110180808225 0.729335612973342 NA NA prediction 0.414450864330236 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119328381 chr3:119328383 nonsynonymous SNV 0.998 2 23 hm6Am_associated_SNPs_3934 0 0 0 0 2 PLA1A chr3:119328315 3'AG 119328315 Downstream 69bp
1819 chr3 119328383 119328383 1 + G T LUSC 119328381 + 119328361 119328401 41 TGGGGGCCCACGTTGGGGGCATGGTGGGACAGCTCTTCGGA TGGGGGCCCACGTTGGGGGCATTGTGGGACAGCTCTTCGGA < 41bp 0.522110180808225 0.729335612973342 NA NA prediction 0.414450864330236 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119328381 chr3:119328383 nonsynonymous SNV 0.998 2 23 hm6Am_associated_SNPs_3934 0 0 0 0 2 PLA1A chr3:119328423 5'GT 119328423 Upstream 41bp
1820 chr2 241808604 241808604 1 + G T SARC 241808602 + 241808582 241808622 41 TGCAGATCATGGACGAGATCAAGGAAGGCATCCAGTACGTG TGCAGATCATGGACGAGATCAATGAAGGCATCCAGTACGTG < 41bp 0.514716215211327 0.721872812495588 NA NA prediction 0.414313194568523 Functional Gain - AGXT ENSG00000172482 CDS Human protein_coding chr2:241808602 chr2:241808604 nonsynonymous SNV 0.996 5 23 hm6Am_associated_SNPs_3936 0 0 0 0 1 AGXT chr2:241808587 3'AG 241808587 Downstream 18bp
1821 chr19 50185189 50185189 1 + G A STAD 50185191 + 50185171 50185211 41 TGCTGAAGGACGAGGTGCGCACCCTCACTTACCGCAACTCC TGCTGAAGGACGAGGTGCACACCCTCACTTACCGCAACTCC < 41bp 0.439699398601182 0.70701968411881 NA NA prediction 0.41403936823762 Functional Gain - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50185191 chr19:50185189 nonsynonymous SNV 0.995 4 19 hm6Am_associated_SNPs_3939 0 0 1 0 1 PRMT1 chr19:50185167 3'AG 50185167 Downstream 23bp
1822 chr5 635651 635651 1 + G C CESC 635650 + 635630 635670 41 CCACTGTACGGAGCGGAGCCAGAGGCCTCCCGTGCCCCCAG CCACTGTACGGAGCGGAGCCACAGGCCTCCCGTGCCCCCAG < 41bp 0.457043515058871 0.706979133906244 NA NA prediction 0.413958267812487 Functional Gain - CEP72 ENSG00000112877 CDS Human protein_coding chr5:635650 chr5:635651 nonsynonymous SNV 0.001 1 22 hm6Am_associated_SNPs_3940 0 0 0 0 1 CEP72 chr5:635699 5'GT 635699 Upstream 49bp
1823 chr14 76965096 76965096 1 + G T LUAD 76965094 + 76965074 76965114 41 GGCCAGGGCTGACTCCCTTCAGGAGTGGAGGCCACTGGAGC GGCCAGGGCTGACTCCCTTCAGTAGTGGAGGCCACTGGAGC < 41bp 0.529544607088813 0.736366456644367 NA NA prediction 0.413643699111109 Functional Gain - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76965094 chr14:76965096 stopgain . 0 23 hm6Am_associated_SNPs_3946 0 0 1 0 1 ESRRB chr14:76965069 3'AG 76965069 Downstream 28bp
1824 chr16 23691419 23691419 1 + G T LUAD 23691421 + 23691401 23691441 41 ACAGTCTCTCCTGGAGCTGCACAAGAGGAGGAAAGCCCTGA ACAGTCTCTCCTGGAGCTTCACAAGAGGAGGAAAGCCCTGA < 41bp 0.277386927234995 0.706795440619726 NA NA prediction 0.413590881239452 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23691421 chr16:23691419 synonymous SNV . 0 19 hm6Am_associated_SNPs_3948 0 0 1 0 1 PLK1 chr16:23691405 3'AG 23691405 Downstream 15bp
1825 chr1 7845596 7845596 1 + G A COAD 7845598 + 7845578 7845618 41 AGAGACGCAATAAACCAAGCACTCTAGATGCCCTCAACTAT AGAGACGCAATAAACCAAACACTCTAGATGCCCTCAACTAT < 41bp 0.608347786346555 0.815125157358409 NA NA prediction 0.413554742023709 Functional Gain - PER3 ENSG00000049246 CDS Human protein_coding chr1:7845598 chr1:7845596 nonsynonymous SNV 0.245 3 19 hm6Am_associated_SNPs_3949 0 0 0 0 2 PER3 chr1:7845501 3'AG 7845501 Downstream 96bp
1826 chr1 7845596 7845596 1 + G A COAD 7845598 + 7845578 7845618 41 AGAGACGCAATAAACCAAGCACTCTAGATGCCCTCAACTAT AGAGACGCAATAAACCAAACACTCTAGATGCCCTCAACTAT < 41bp 0.608347786346555 0.815125157358409 NA NA prediction 0.413554742023709 Functional Gain - PER3 ENSG00000049246 CDS Human protein_coding chr1:7845598 chr1:7845596 nonsynonymous SNV 0.245 3 19 hm6Am_associated_SNPs_3949 0 0 0 0 2 PER3 chr1:7845646 5'GT 7845646 Upstream 51bp
1827 chr4 2916675 2916675 1 + G A UCEC 2916677 + 2916657 2916697 41 AGCCCCACGTCATTGTGAGCACCACGGGCCCCAACCCCTTC AGCCCCACGTCATTGTGAACACCACGGGCCCCAACCCCTTC < 41bp 0.621254753210042 0.828030484072531 NA NA prediction 0.413551461724979 Functional Gain - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2916677 chr4:2916675 nonsynonymous SNV 0.999 1 19 hm6Am_associated_SNPs_3950 0 0 1 0 2 ADD1 chr4:2916611 3'AG 2916611 Downstream 65bp
1828 chr4 2916675 2916675 1 + G A UCEC 2916677 + 2916657 2916697 41 AGCCCCACGTCATTGTGAGCACCACGGGCCCCAACCCCTTC AGCCCCACGTCATTGTGAACACCACGGGCCCCAACCCCTTC < 41bp 0.621254753210042 0.828030484072531 NA NA prediction 0.413551461724979 Functional Gain - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2916677 chr4:2916675 nonsynonymous SNV 0.999 1 19 hm6Am_associated_SNPs_3950 0 0 1 0 2 ADD1 chr4:2916767 5'GT 2916767 Upstream 93bp
1829 chr2 71795342 71795342 1 + G A COAD 71795344 + 71795324 71795364 41 CCCTTGTTGGGAACTGGGGCACAACGGGCCTCACCTACCCC CCCTTGTTGGGAACTGGGACACAACGGGCCTCACCTACCCC < 41bp 0.481199774286822 0.706751773277795 NA NA prediction 0.41350354655559 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71795344 chr2:71795342 nonsynonymous SNV 1.000 5 19 hm6Am_associated_SNPs_3953 0 0 0 0 1 DYSF chr2:71795302 3'AG 71795302 Downstream 41bp
1830 chr7 810148 810148 1 + G T SARC 810146 + 810126 810166 41 CCCTGCCACACGTCGTGCCCACGCTGAGGGCCTGTCTGCAG CCCTGCCACACGTCGTGCCCACTCTGAGGGCCTGTCTGCAG < 41bp 0.504053977354273 0.710729601826391 NA NA prediction 0.413351248944236 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:810146 chr7:810148 synonymous SNV . 0 23 hm6Am_associated_SNPs_3960 0 0 1 0 1 DNAAF5 chr7:810108 3'AG 810108 Downstream 41bp
1831 chr22 45809828 45809828 1 + G A COAD 45809830 + 45809810 45809850 41 CGGCAGGACGCCAACCTGGCAAAGAGGAGGCACGCGGAGCT CGGCAGGACGCCAACCTGACAAAGAGGAGGCACGCGGAGCT < 41bp 0.634506744851736 0.841049517048994 NA NA prediction 0.413085544394515 Functional Gain - RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45809830 chr22:45809828 nonsynonymous SNV 0.004 0 19 hm6Am_associated_SNPs_3964 0 0 0 0 1 RIBC2 chr22:45809896 5'GT 45809896 Upstream 69bp
1832 chr5 126732405 126732405 1 + G C ESCA 126732404 + 126732384 126732424 41 TCATCAGAGATGCCAGTGCCAGAATGGAGCCACCTGCGACC TCATCAGAGATGCCAGTGCCACAATGGAGCCACCTGCGACC < 41bp 0.456078737503969 0.706498359895117 NA NA prediction 0.412996719790234 Functional Gain - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126732404 chr5:126732405 nonsynonymous SNV 1.000 1 22 hm6Am_associated_SNPs_3966 0 0 0 0 1 MEGF10 chr5:126732470 5'GT 126732470 Upstream 66bp
1833 chr16 31368598 31368598 1 + G T LUSC 31368596 + 31368576 31368616 41 CTGCGGCCCCACCGTGCACCACGAGTGCGGGAGGAACATGT CTGCGGCCCCACCGTGCACCACTAGTGCGGGAGGAACATGT < 41bp 0.516390855221672 0.722834022848528 NA NA prediction 0.412886335253711 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31368596 chr16:31368598 stopgain 0.005 0 23 hm6Am_associated_SNPs_3971 0 0 0 0 1 ITGAX chr16:31368574 3'AG 31368574 Downstream 25bp
1834 chr7 150698357 150698357 1 + G T UCEC 150698355 + 150698335 150698375 41 TCGTGGACCACCACGCCGCCACGGCCTCTTTCATGAAGCAC TCGTGGACCACCACGCCGCCACTGCCTCTTTCATGAAGCAC < 41bp 0.50570839493774 0.712140465087498 NA NA prediction 0.412864140299515 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150698355 chr7:150698357 synonymous SNV . 0 23 hm6Am_associated_SNPs_3973 0 0 0 0 1 NOS3 chr7:150698319 3'AG 150698319 Downstream 39bp
1835 chr17 61607783 61607783 1 + G T LUSC 61607781 + 61607761 61607801 41 TCAGCCAGATCCCACAGTTCACGCTCAACTTCGTGGAGTTC TCAGCCAGATCCCACAGTTCACTCTCAACTTCGTGGAGTTC < 41bp 0.504118383652112 0.710549011047119 NA NA prediction 0.412861254790014 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61607781 chr17:61607783 synonymous SNV . 0 23 hm6Am_associated_SNPs_3974 0 0 0 0 1 KCNH6 chr17:61607698 3'AG 61607698 Downstream 86bp
1836 chr11 397626 397626 1 + G A UCEC 397628 + 397608 397648 41 GGGAGCGGCCTACATCCAGCACAAGTGCTACAGCGATGCAG GGGAGCGGCCTACATCCAACACAAGTGCTACAGCGATGCAG < 41bp 0.446017347983004 0.706365585617603 NA NA prediction 0.412731171235206 Functional Gain - PKP3 ENSG00000184363 CDS Human protein_coding chr11:397628 chr11:397626 synonymous SNV . 0 19 hm6Am_associated_SNPs_3977 0 0 1 0 2 PKP3 chr11:397539 3'AG 397539 Downstream 88bp
1837 chr11 397626 397626 1 + G A UCEC 397628 + 397608 397648 41 GGGAGCGGCCTACATCCAGCACAAGTGCTACAGCGATGCAG GGGAGCGGCCTACATCCAACACAAGTGCTACAGCGATGCAG < 41bp 0.446017347983004 0.706365585617603 NA NA prediction 0.412731171235206 Functional Gain - PKP3 ENSG00000184363 CDS Human protein_coding chr11:397628 chr11:397626 synonymous SNV . 0 19 hm6Am_associated_SNPs_3977 0 0 1 0 2 PKP3 chr11:397662 5'GT 397662 Upstream 37bp
1838 chr7 66804835 66804835 1 + G A rs532119771 66804837 + 66804817 66804857 41 TTGAATTCCTGACCTCAAGCAATCCTCCTGCCTCTGCCTCC TTGAATTCCTGACCTCAAACAATCCTCCTGCCTCTGCCTCC < 41bp 0.618295437674793 0.824601382338241 NA NA prediction 0.412611889326895 Functional Gain - LINC01372 ENSG00000235475 ncRNA_exonic Human lincRNA chr7:66804837 chr7:66804835 . . 0 19 hm6Am_associated_SNPs_3979 0 0 0 0 1 LINC01372 chr7:66804784 3'AG 66804784 Downstream 52bp
1839 chr1 16352670 16352670 1 + G T COAD 16352668 + 16352648 16352688 41 TGGAGGACTACCTGGATATCAAGAACTTTGGGGCCAAGGTG TGGAGGACTACCTGGATATCAATAACTTTGGGGCCAAGGTG < 41bp 0.513636705952792 0.719938350627028 NA NA prediction 0.412603289348471 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16352668 chr1:16352670 nonsynonymous SNV 0.998 2 23 hm6Am_associated_SNPs_3980 0 0 0 0 2 CLCNKA chr1:16352603 3'AG 16352603 Downstream 68bp
1840 chr1 16352670 16352670 1 + G T COAD 16352668 + 16352648 16352688 41 TGGAGGACTACCTGGATATCAAGAACTTTGGGGCCAAGGTG TGGAGGACTACCTGGATATCAATAACTTTGGGGCCAAGGTG < 41bp 0.513636705952792 0.719938350627028 NA NA prediction 0.412603289348471 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16352668 chr1:16352670 nonsynonymous SNV 0.998 2 23 hm6Am_associated_SNPs_3980 0 0 0 0 2 CLCNKA chr1:16352742 5'GT 16352742 Upstream 73bp
1841 chr19 55021748 55021748 1 + G A LUSC 55021746 + 55021726 55021766 41 GTCCTCACAGGGACTGTGCCAGGCACTGAAGCCTCCGGATT GTCCTCACAGGGACTGTGCCAGACACTGAAGCCTCCGGATT < 41bp 0.504389554120625 0.710642740635439 NA NA prediction 0.412506373029629 Functional Gain - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55021746 chr19:55021748 nonsynonymous SNV 0.058 1 23 hm6Am_associated_SNPs_3982 0 0 0 0 1 LAIR2 chr19:55021736 3'AG 55021736 Downstream 13bp
1842 chr10 46918241 46918241 1 + G C CESC 46918240 + 46918220 46918260 41 CCTCAAAACATTCCTACCTCAGAGATCTTCCTCCGAGACAG CCTCAAAACATTCCTACCTCACAGATCTTCCTCCGAGACAG < 41bp 0.5605928505145 0.766817405902591 NA NA prediction 0.412449110776182 Functional Gain - FAM35BP ENSG00000165874 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:46918240 chr10:46918241 . . 0 22 hm6Am_associated_SNPs_3983 0 0 0 0 1 FAM35BP chr10:46918169 3'AG 46918169 Downstream 73bp
1843 chr6 33043830 33043830 1 + G T COAD 33043832 + 33043812 33043852 41 CAGCTCCATGATGGTTCTGCAGGTTTCTGCGGCCCCCCGGA CAGCTCCATGATGGTTCTTCAGGTTTCTGCGGCCCCCCGGA < 41bp 0.422174738504943 0.7061130781599 NA NA prediction 0.4122261563198 Functional Gain - HLA-DPB1 ENSG00000223865 CDS Human protein_coding chr6:33043832 chr6:33043830 synonymous SNV . 0 19 hm6Am_associated_SNPs_3985 0 0 0 0 1 HLA-DPB1 chr6:33043918 5'GT 33043918 Upstream 89bp
1844 chr3 32737222 32737222 1 + G T SARC 32737220 + 32737200 32737240 41 GCCAGAGTAGAAGGAAAGTCAAGCTTATGGGTGAACGGTCG GCCAGAGTAGAAGGAAAGTCAATCTTATGGGTGAACGGTCG < 41bp 0.491560282129985 0.706043834366204 NA NA prediction 0.412087668732408 Functional Gain - CNOT10 ENSG00000182973 CDS Human protein_coding chr3:32737220 chr3:32737222 nonsynonymous SNV 0.022 1 23 hm6Am_associated_SNPs_3989 0 0 1 0 1 CNOT10 chr3:32737319 5'GT 32737319 Upstream 98bp
1845 chr20 62850214 62850214 1 + G A SARC 62850216 + 62850196 62850236 41 AAAGGCCTCTTCCCCCAGGCACAGCCCCTCCAGTAGTTATG AAAGGCCTCTTCCCCCAGACACAGCCCCTCCAGTAGTTATG < 41bp 0.635756093845017 0.84178300938498 NA NA prediction 0.412053831079927 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62850216 chr20:62850214 synonymous SNV . 0 19 hm6Am_associated_SNPs_3990 0 0 0 0 1 MYT1 chr20:62850183 3'AG 62850183 Downstream 32bp
1846 chr11 8117131 8117131 1 + G T LUAD 8117129 + 8117109 8117149 41 GACTGTGGGCCAGTCAGACCACGCCCAGGACGCAGGGGAGA GACTGTGGGCCAGTCAGACCACTCCCAGGACGCAGGGGAGA < 41bp 0.497557113719611 0.705991769106936 NA NA prediction 0.411983538213873 Functional Gain - TUB ENSG00000166402 CDS Human protein_coding chr11:8117129 chr11:8117131 nonsynonymous SNV 0.877 1 23 hm6Am_associated_SNPs_3991 0 0 0 0 1 TUB chr11:8117045 3'AG 8117045 Downstream 87bp
1847 chr3 150877829 150877829 1 + G C BLCA 150877828 + 150877808 150877848 41 CCCGTGCAGCTGGCCTTCTCAGATTTTCTTTCCTGTGCACA CCCGTGCAGCTGGCCTTCTCACATTTTCTTTCCTGTGCACA < 41bp 0.47210103597386 0.705949237712306 NA NA prediction 0.411898475424611 Functional Gain - MED12L ENSG00000144893 CDS Human protein_coding chr3:150877828 chr3:150877829 nonsynonymous SNV 1.000 4 22 hm6Am_associated_SNPs_3996 0 0 0 0 1 MED12L chr3:150877888 5'GT 150877888 Upstream 60bp
1848 chr7 20371553 20371553 1 + G T HNSC 20371551 + 20371531 20371571 41 ACTTGTTCTTGGACTGGGCCAAGGTGGTAAGTTGTTTTGTT ACTTGTTCTTGGACTGGGCCAATGTGGTAAGTTGTTTTGTT < 41bp 0.519007939571066 0.724939561566599 NA NA prediction 0.411863243991066 Functional Gain - ITGB8 ENSG00000105855 CDS Human protein_coding chr7:20371551 chr7:20371553 nonsynonymous SNV 0.998 1 23 hm6Am_associated_SNPs_3998 0 0 1 0 2 ITGB8 chr7:20371556 5'GT 20371556 Upstream 4bp
1849 chr7 20371553 20371553 1 + G T HNSC 20371551 + 20371531 20371571 41 ACTTGTTCTTGGACTGGGCCAAGGTGGTAAGTTGTTTTGTT ACTTGTTCTTGGACTGGGCCAATGTGGTAAGTTGTTTTGTT < 41bp 0.519007939571066 0.724939561566599 NA NA prediction 0.411863243991066 Functional Gain - ITGB8 ENSG00000105855 CDS Human protein_coding chr7:20371551 chr7:20371553 nonsynonymous SNV 0.998 1 23 hm6Am_associated_SNPs_3998 0 0 1 0 2 ITGB8 chr7:20371646 5'GT 20371646 Upstream 94bp
1850 chr9 127566419 127566419 1 + G T STAD 127566417 + 127566397 127566437 41 GGCTGGAGCAACTGCCGCCCAAGGTGGAGGGCAGGTCCAAC GGCTGGAGCAACTGCCGCCCAATGTGGAGGGCAGGTCCAAC < 41bp 0.515728508320516 0.721603369680033 NA NA prediction 0.411749722719033 Functional Gain - OLFML2A ENSG00000185585 CDS Human protein_coding chr9:127566417 chr9:127566419 nonsynonymous SNV 0.029 0 23 hm6Am_associated_SNPs_4002 0 0 0 0 1 OLFML2A chr9:127566373 3'AG 127566373 Downstream 47bp
1851 chr12 54891607 54891607 1 + G A UCEC 54891609 + 54891589 54891629 41 GCTTACCAGCATAAATTAGCAGAGAAGCTCACTATCCTGAA GCTTACCAGCATAAATTAACAGAGAAGCTCACTATCCTGAA < 41bp 0.634280876218276 0.840127150718701 NA NA prediction 0.41169254900085 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54891609 chr12:54891607 nonsynonymous SNV 0.990 2 19 hm6Am_associated_SNPs_4005 0 0 1 0 1 NCKAP1L chr12:54891675 5'GT 54891675 Upstream 69bp
1852 chr2 74432892 74432892 1 + G A UCEC 74432894 + 74432874 74432914 41 GATCAAGCAGGAAGTGCGGCAGGAGGTAGAAGAGTGGGTGG GATCAAGCAGGAAGTGCGACAGGAGGTAGAAGAGTGGGTGG < 41bp 0.526013446369759 0.731813217681242 NA NA prediction 0.411599542622967 Functional Gain - MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74432894 chr2:74432892 synonymous SNV . 0 19 hm6Am_associated_SNPs_4007 0 0 1 0 1 MTHFD2 chr2:74432832 3'AG 74432832 Downstream 61bp
1853 chr2 219736268 219736268 1 + G T LUAD 219736270 + 219736250 219736290 41 CGCCAGCCACGCCGTCACGCAGGCCTGTTCTATGGGCGAGC CGCCAGCCACGCCGTCACTCAGGCCTGTTCTATGGGCGAGC < 41bp 0.29182827418028 0.705691144644156 NA NA prediction 0.411382289288313 Functional Gain - WNT6 ENSG00000115596 CDS Human protein_coding chr2:219736270 chr2:219736268 synonymous SNV . 0 19 hm6Am_associated_SNPs_4015 0 0 0 0 1 WNT6 chr2:219736207 3'AG 219736207 Downstream 62bp
1854 chr19 7614842 7614842 1 + G A OV 7614844 + 7614824 7614864 41 GCCTGCACGTGTACCAGCGCATGATCGACAAGGCGGAGGAC GCCTGCACGTGTACCAGCACATGATCGACAAGGCGGAGGAC < 41bp 0.44495950402595 0.705686366439973 NA NA prediction 0.411372732879946 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7614844 chr19:7614842 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_4016 0 0 0 0 1 PNPLA6 chr19:7614793 3'AG 7614793 Downstream 50bp
1855 chr20 57875916 57875916 1 + G A rs11570255 57875918 + 57875898 57875938 41 CTCACAGTGACCTCCGCCGCAGGTAAGCGCACGGGGCGGCG CTCACAGTGACCTCCGCCACAGGTAAGCGCACGGGGCGGCG < 41bp 0.444179625127026 0.705655878444606 NA NA prediction 0.411311756889213 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57875918 chr20:57875916 nonsynonymous SNV 0.998 2 19 hm6Am_associated_SNPs_4017 3 0 0 0 1 EDN3 chr20:57875919 5'GT 57875919 Upstream 4bp
1856 chr1 33549675 33549675 1 + G C LAML 33549674 + 33549654 33549694 41 GTCAAGTGCAACAGCAGCCCAGGTGTGCTGAAGGTTCTGGC GTCAAGTGCAACAGCAGCCCACGTGTGCTGAAGGTTCTGGC < 41bp 0.569730689706619 0.775379387494315 NA NA prediction 0.411297395575393 Functional Gain - AZIN2 ENSG00000142920 CDS Human protein_coding chr1:33549674 chr1:33549675 nonsynonymous SNV 0.988 2 22 hm6Am_associated_SNPs_4018 0 0 0 0 1 AZIN2 chr1:33549728 5'GT 33549728 Upstream 54bp
1857 chrX 69672555 69672555 1 + G A UCEC 69672557 + 69672537 69672577 41 GGCCTGGAGGAGGGCTTCGCAGAGGTGGGCCTGGCCGCTCC GGCCTGGAGGAGGGCTTCACAGAGGTGGGCCTGGCCGCTCC < 41bp 0.638950140490974 0.84452008475157 NA NA prediction 0.411139888521192 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69672557 chrX:69672555 synonymous SNV . 0 19 hm6Am_associated_SNPs_4023 0 0 0 0 1 DLG3 chrX:69672605 5'GT 69672605 Upstream 51bp
1858 chrX 47976520 47976520 1 + G T LUSC 47976518 + 47976498 47976538 41 AAGTAGCTCTGAGAAGATTCACGAGAGATCTGGTAAGAGGA AAGTAGCTCTGAGAAGATTCACTAGAGATCTGGTAAGAGGA < 41bp 0.517280955026949 0.722819615283167 NA NA prediction 0.411077320512436 Functional Gain - SSX6 ENSG00000171483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:47976518 chrX:47976520 . . 0 23 hm6Am_associated_SNPs_4025 0 0 0 0 1 SSX6 chrX:47976529 5'GT 47976529 Upstream 10bp
1859 chr12 247571 247571 1 - C A LUAD 247569 - 247549 247589 41 GCAGGGAGATCCGCCGTGGCAGGCGGCTCTCCAGAAGCGAG GCAGGGAGATCCGCCGTGTCAGGCGGCTCTCCAGAAGCGAG < 41bp 0.274782593842203 0.70548973240134 NA NA prediction 0.41097946480268 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:247569 chr12:247571 nonsynonymous SNV 0.981 3 19 hm6Am_associated_SNPs_4027 0 0 0 0 1 IQSEC3 chr12:247618 3'AG 247618 Downstream 48bp
1860 chr17 72305506 72305506 1 - C T STAD 72305504 - 72305484 72305524 41 CAAGCTGAGGGTGGGATCGCACTGCTCGAACATGAAGTCCC CAAGCTGAGGGTGGGATCACACTGCTCGAACATGAAGTCCC < 41bp 0.440978444898576 0.705436020986286 NA NA prediction 0.410872041972573 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72305504 chr17:72305506 synonymous SNV . 0 19 hm6Am_associated_SNPs_4029 0 0 0 0 1 DNAI2 chr17:72305408 5'GT 72305408 Upstream 99bp
1861 chr10 42971229 42971229 1 + G A rs59294595 42971231 + 42971211 42971251 41 ACTTTGGAGCTGCCTCATGCAGCGACCTCGCCTTCCGCTGC ACTTTGGAGCTGCCTCATACAGCGACCTCGCCTTCCGCTGC < 41bp 0.620123732672531 0.825532262788176 NA NA prediction 0.410817060231291 Functional Gain - LINC00839 ENSG00000185904 ncRNA_exonic Human lincRNA chr10:42971231 chr10:42971229 . . 0 19 hm6Am_associated_SNPs_4030 0 0 0 0 1 LINC00839 chr10:42971328 5'GT 42971328 Upstream 100bp
1862 chr20 44680433 44680433 1 + G C OV 44680435 + 44680415 44680455 41 GGGCCTCGGGGGGCTGCAGCACAACACTGTGCTTGTTGGCT GGGCCTCGGGGGGCTGCACCACAACACTGTGCTTGTTGGCT < 41bp 0.340831494299639 0.705270202847719 NA NA prediction 0.410540405695439 Functional Gain - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44680435 chr20:44680433 nonsynonymous SNV 0.944 3 19 hm6Am_associated_SNPs_4036 0 0 0 0 1 SLC12A5 chr20:44680509 5'GT 44680509 Upstream 77bp
1863 chr15 102291782 102291782 1 + G A ESCA 102291784 + 102291764 102291804 41 TGGCTCCCACAGCTTCATGCACTCCATGGACCCACAGCTGG TGGCTCCCACAGCTTCATACACTCCATGGACCCACAGCTGG < 41bp 0.466752576550635 0.705227417357784 NA NA prediction 0.410454834715568 Functional Gain - LOC100128108;OR4F6 ENSG00000259660 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102291784 chr15:102291782 . . 0 19 hm6Am_associated_SNPs_4037 0 0 0 0 1 LOC100128108;OR4F6 chr15:102291744 3'AG 102291744 Downstream 39bp
1864 chr11 2398805 2398805 1 + G A UCEC 2398807 + 2398787 2398827 41 TGGAGGGCTGCACCAAGTGCATCAAGTACCTGCTCTTCGTC TGGAGGGCTGCACCAAGTACATCAAGTACCTGCTCTTCGTC < 41bp 0.623113312276486 0.828309989160232 NA NA prediction 0.410393353767492 Functional Gain - CD81 ENSG00000110651 CDS Human protein_coding chr11:2398807 chr11:2398805 nonsynonymous SNV 0.991 4 19 hm6Am_associated_SNPs_4040 0 0 1 0 1 CD81 chr11:2398845 5'GT 2398845 Upstream 41bp
1865 chr11 1250942 1250942 1 + G A PRAD 1250944 + 1250924 1250964 41 GGTGCTGGATGACATCACGCACTCTGGCTGCCTGCCCCTCG GGTGCTGGATGACATCACACACTCTGGCTGCCTGCCCCTCG < 41bp 0.480767716511142 0.70518069405152 NA NA prediction 0.410361388103039 Functional Gain - MUC5B ENSG00000117983 CDS Human protein_coding chr11:1250944 chr11:1250942 synonymous SNV . 0 19 hm6Am_associated_SNPs_4042 0 0 0 0 2 MUC5B chr11:1250920 3'AG 1250920 Downstream 23bp
1866 chr11 1250942 1250942 1 + G A PRAD 1250944 + 1250924 1250964 41 GGTGCTGGATGACATCACGCACTCTGGCTGCCTGCCCCTCG GGTGCTGGATGACATCACACACTCTGGCTGCCTGCCCCTCG < 41bp 0.480767716511142 0.70518069405152 NA NA prediction 0.410361388103039 Functional Gain - MUC5B ENSG00000117983 CDS Human protein_coding chr11:1250944 chr11:1250942 synonymous SNV . 0 19 hm6Am_associated_SNPs_4042 0 0 0 0 2 MUC5B chr11:1251037 5'GT 1251037 Upstream 96bp
1867 chr22 35734771 35734771 1 + G T GBM 35734773 + 35734753 35734793 41 TGGACGCCCGGCAGCAGAGCACTGGCGCGGTAAGCAGAGGG TGGACGCCCGGCAGCAGATCACTGGCGCGGTAAGCAGAGGG < 41bp 0.290233911563892 0.705150822965928 NA NA prediction 0.410301645931857 Functional Gain - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35734773 chr22:35734771 nonsynonymous SNV 0.998 1 19 hm6Am_associated_SNPs_4046 0 0 1 0 1 TOM1 chr22:35734781 5'GT 35734781 Upstream 11bp
1868 chr19 11558275 11558275 1 + G A rs11557488 11558277 + 11558257 11558297 41 CTGCCCACCGACCTTCCAGCACCTTCTGCCCCTGACTTGAC CTGCCCACCGACCTTCCAACACCTTCTGCCCCTGACTTGAC < 41bp 0.444075066134903 0.705123683998933 NA NA prediction 0.410247367997866 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11558277 chr19:11558275 nonsynonymous SNV 0.004 0 19 hm6Am_associated_SNPs_4048 2 0 1 0 1 PRKCSH chr19:11558254 3'AG 11558254 Downstream 22bp
1869 chr1 46976618 46976618 1 + G T UCEC 46976616 + 46976596 46976636 41 CCCGTCCCCAGGTGTGGTTCAAGAACCGCCGGGCCAAGTTC CCCGTCCCCAGGTGTGGTTCAATAACCGCCGGGCCAAGTTC < 41bp 0.534633139715196 0.739738568857303 NA NA prediction 0.410210858284215 Functional Gain - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976616 chr1:46976618 nonsynonymous SNV 1.000 5 23 hm6Am_associated_SNPs_4050 0 0 0 0 1 DMBX1 chr1:46976607 3'AG 46976607 Downstream 12bp
1870 chr11 125774440 125774440 1 + G A DLBC 125774442 + 125774422 125774462 41 TTACTGTGGGGAGGCGACGCAGGGGCGGCGGAGAGCGAGCG TTACTGTGGGGAGGCGACACAGGGGCGGCGGAGAGCGAGCG < 41bp 0.554025423848668 0.759089186841377 NA NA prediction 0.410127525985418 Functional Gain - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125774442 chr11:125774440 nonsynonymous SNV 0.995 0 19 hm6Am_associated_SNPs_4052 0 0 0 0 1 DDX25 chr11:125774475 5'GT 125774475 Upstream 36bp
1871 chr15 81241233 81241233 1 - C T LAML 81241231 - 81241211 81241251 41 TCTTCACCACAGGGATGGGCACAACTTGGAAGATTTTGGCT TCTTCACCACAGGGATGGACACAACTTGGAAGATTTTGGCT < 41bp 0.631460810815906 0.836507046030172 NA NA prediction 0.410092470428531 Functional Gain - CEMIP ENSG00000103888 CDS Human protein_coding chr15:81241231 chr15:81241233 nonsynonymous SNV 0.928 4 19 hm6Am_associated_SNPs_4054 0 0 0 0 1 CEMIP chr15:81241239 3'AG 81241239 Downstream 7bp
1872 chr7 73118501 73118501 1 - C G STAD 73118499 - 73118479 73118519 41 GCGAGCGCTGCAAAGGCCGCATCCAGAGGCAGCTGGAGATC GCGAGCGCTGCAAAGGCCCCATCCAGAGGCAGCTGGAGATC < 41bp 0.341472926593222 0.705004839023932 NA NA prediction 0.410009678047863 Functional Gain - STX1A ENSG00000106089 CDS Human protein_coding chr7:73118499 chr7:73118501 nonsynonymous SNV 0.998 4 19 hm6Am_associated_SNPs_4055 0 0 0 0 2 STX1A chr7:73118478 5'GT 73118478 Upstream 24bp
1873 chr7 73118501 73118501 1 - C G STAD 73118499 - 73118479 73118519 41 GCGAGCGCTGCAAAGGCCGCATCCAGAGGCAGCTGGAGATC GCGAGCGCTGCAAAGGCCCCATCCAGAGGCAGCTGGAGATC < 41bp 0.341472926593222 0.705004839023932 NA NA prediction 0.410009678047863 Functional Gain - STX1A ENSG00000106089 CDS Human protein_coding chr7:73118499 chr7:73118501 nonsynonymous SNV 0.998 4 19 hm6Am_associated_SNPs_4055 0 0 0 0 2 STX1A chr7:73118586 3'AG 73118586 Downstream 86bp
1874 chr15 41188187 41188187 1 + G A COAD 41188189 + 41188169 41188209 41 CCATCTTCACAAAGCAGCGCATTGACTTCACCCCTTCCGAG CCATCTTCACAAAGCAGCACATTGACTTCACCCCTTCCGAG < 41bp 0.445324606063367 0.704989945254009 NA NA prediction 0.409979890508019 Functional Gain - VPS18 ENSG00000104142 CDS Human protein_coding chr15:41188189 chr15:41188187 nonsynonymous SNV 0.997 4 19 hm6Am_associated_SNPs_4056 0 0 1 0 1 VPS18 chr15:41188277 5'GT 41188277 Upstream 91bp
1875 chrX 69713314 69713314 1 + G T UCEC 69713316 + 69713296 69713336 41 ACATGGCCCAGGAGAGCAGCATACAGGAACGTAAGTAGCAG ACATGGCCCAGGAGAGCATCATACAGGAACGTAAGTAGCAG < 41bp 0.28192598836934 0.704988337241009 NA NA prediction 0.409976674482017 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69713316 chrX:69713314 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_4057 0 0 0 0 2 DLG3 chrX:69713226 3'AG 69713226 Downstream 89bp
1876 chrX 69713314 69713314 1 + G T UCEC 69713316 + 69713296 69713336 41 ACATGGCCCAGGAGAGCAGCATACAGGAACGTAAGTAGCAG ACATGGCCCAGGAGAGCATCATACAGGAACGTAAGTAGCAG < 41bp 0.28192598836934 0.704988337241009 NA NA prediction 0.409976674482017 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69713316 chrX:69713314 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_4057 0 0 0 0 2 DLG3 chrX:69713325 5'GT 69713325 Upstream 12bp
1877 chr3 129206728 129206728 1 + G C rs201911530 129206730 + 129206710 129206750 41 GGGGCTTGGGAGGACTCTGCAGAAGAGGTGACATTTCAACA GGGGCTTGGGAGGACTCTCCAGAAGAGGTGACATTTCAACA < 41bp 0.379965358674957 0.704902879367319 NA NA prediction 0.409805758734639 Functional Gain - IFT122 ENSG00000163913 intronic Human protein_coding chr3:129206730 chr3:129206728 . . 0 19 hm6Am_associated_SNPs_4060 0 0 0 0 1 IFT122 chr3:129206770 5'GT 129206770 Upstream 43bp
1878 chr2 29247154 29247154 1 + G C COAD 29247153 + 29247133 29247173 41 GGACACCAACGAGTTCATCCAGAGAGCAGCCGGCCAGTCTC GGACACCAACGAGTTCATCCACAGAGCAGCCGGCCAGTCTC < 41bp 0.433059982768412 0.70488843953709 NA NA prediction 0.40977687907418 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29247153 chr2:29247154 nonsynonymous SNV 0.911 2 22 hm6Am_associated_SNPs_4062 0 0 0 0 1 TOGARAM2 chr2:29247240 5'GT 29247240 Upstream 87bp
1879 chr1 53535536 53535536 1 + G C BRCA 53535535 + 53535515 53535555 41 CCCTGCAGGCACCATGGCCCAGAGCCGGGTGCTGCTGCTCC CCCTGCAGGCACCATGGCCCACAGCCGGGTGCTGCTGCTCC < 41bp 0.604726462469806 0.809589613775168 NA NA prediction 0.409726302610724 Functional Gain - PODN ENSG00000174348 CDS Human protein_coding chr1:53535535 chr1:53535536 nonsynonymous SNV 0.116 1 22 hm6Am_associated_SNPs_4063 0 0 0 0 1 PODN chr1:53535473 3'AG 53535473 Downstream 64bp
1880 chr1 230883454 230883454 1 + G T UCEC 230883452 + 230883432 230883472 41 CCCTTTGTGTGGAAACGACCAGGGGTGAGTGGGGCGAGCAG CCCTTTGTGTGGAAACGACCAGTGGTGAGTGGGGCGAGCAG < 41bp 0.535352181373271 0.740088366521301 NA NA prediction 0.409472370296061 Functional Gain - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230883452 chr1:230883454 nonsynonymous SNV 0.998 1 23 hm6Am_associated_SNPs_4071 0 0 0 0 1 CAPN9 chr1:230883455 5'GT 230883455 Upstream 2bp
1881 chr4 95377411 95377411 1 + G A rs11932136 95377413 + 95377393 95377433 41 AGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACCACAACCT AGGCTGGAGTGCAGTGGCACAATCTCGGCTCACCACAACCT < 41bp 0.457313752273485 0.704709975888477 NA NA prediction 0.409419951776954 Functional Gain - PDLIM5 ENSG00000163110 CDS Human protein_coding chr4:95377413 chr4:95377411 nonsynonymous SNV 0.000 0 19 hm6Am_associated_SNPs_4073 0 0 1 0 1 PDLIM5 chr4:95377395 3'AG 95377395 Downstream 17bp
1882 chr7 100386946 100386946 1 + G C STAD 100386945 + 100386925 100386965 41 CCGACTTTGAGCTGGTCGTCAGCTTTGGTGGAAGGAAAAAT CCGACTTTGAGCTGGTCGTCACCTTTGGTGGAAGGAAAAAT < 41bp 0.507327175926048 0.711978028328954 NA NA prediction 0.409301704805812 Functional Gain - ZAN ENSG00000146839 CDS Human protein_coding chr7:100386945 chr7:100386946 nonsynonymous SNV 0.001 0 22 hm6Am_associated_SNPs_4077 0 0 0 0 1 ZAN chr7:100386969 5'GT 100386969 Upstream 24bp
1883 chr7 64129517 64129517 1 + G A rs138291959 64129519 + 64129499 64129539 41 TTCTCCTGCCTCAACCTCGCAAGTAGCTGGGATTACAGGCA TTCTCCTGCCTCAACCTCACAAGTAGCTGGGATTACAGGCA < 41bp 0.461399616252759 0.704629069328475 NA NA prediction 0.40925813865695 Functional Gain - ZNF107 ENSG00000196247 UTR5 Human protein_coding chr7:64129519 chr7:64129517 . . 0 19 hm6Am_associated_SNPs_4078 0 0 0 0 1 ZNF107 chr7:64129556 5'GT 64129556 Upstream 40bp
1884 chr17 48602369 48602369 1 + G A SKCM 48602371 + 48602351 48602391 41 CGAGGAAGACTTGTTCCGGCACAGAAATCCTCCGGTGAGGC CGAGGAAGACTTGTTCCGACACAGAAATCCTCCGGTGAGGC < 41bp 0.440281675473477 0.704525681915365 NA NA prediction 0.40905136383073 Functional Gain - MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48602371 chr17:48602369 synonymous SNV . 0 19 hm6Am_associated_SNPs_4081 0 0 0 0 1 MYCBPAP chr17:48602384 5'GT 48602384 Upstream 16bp
1885 chr7 142563770 142563770 1 + G T CESC 142563768 + 142563748 142563788 41 AGGTGCAAGGCTCAGCACTCATGCTACACTGGCGCCTGCCT AGGTGCAAGGCTCAGCACTCATTCTACACTGGCGCCTGCCT < 41bp 0.512019816529107 0.716435313822512 NA NA prediction 0.40883099458681 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142563768 chr7:142563770 nonsynonymous SNV 0.993 1 23 hm6Am_associated_SNPs_4084 0 0 0 0 1 EPHB6 chr7:142563715 3'AG 142563715 Downstream 56bp
1886 chrX 153034415 153034415 1 + G T COAD 153034413 + 153034393 153034433 41 CCCCACTCAGGTCTTTCTCCACGGCTCCCAGGGCCAGGTTT CCCCACTCAGGTCTTTCTCCACTGCTCCCAGGGCCAGGTTT < 41bp 0.496024208521752 0.704299112802142 NA NA prediction 0.408598225604283 Functional Gain - PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153034413 chrX:153034415 nonsynonymous SNV 0.147 3 23 hm6Am_associated_SNPs_4090 0 0 0 0 1 PLXNB3 chrX:153034403 3'AG 153034403 Downstream 13bp
1887 chr20 39798941 39798941 1 + G C rs201010219 39798940 + 39798920 39798960 41 GCTGGAACCTTCTGGGGGGCAGTGTGTGGGCCCGTCAGGCA GCTGGAACCTTCTGGGGGGCACTGTGTGGGCCCGTCAGGCA < 41bp 0.532045969028838 0.736229577863207 NA NA prediction 0.408367217668737 Functional Gain - PLCG1 ENSG00000124181 intronic Human protein_coding chr20:39798940 chr20:39798941 . . 0 22 hm6Am_associated_SNPs_4094 0 0 1 0 1 PLCG1 chr20:39798909 3'AG 39798909 Downstream 33bp
1888 chr16 57714440 57714440 1 + G A COAD 57714438 + 57714418 57714458 41 GACCCACCTTGGACCAGTCCACGGTGCATATCCTCACACGC GACCCACCTTGGACCAGTCCACAGTGCATATCCTCACACGC < 41bp 0.501182566900322 0.705318721221661 NA NA prediction 0.408272308642678 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714438 chr16:57714440 synonymous SNV . 0 23 hm6Am_associated_SNPs_4096 0 0 0 0 2 ADGRG3 chr16:57714417 3'AG 57714417 Downstream 24bp
1889 chr16 57714440 57714440 1 + G A COAD 57714438 + 57714418 57714458 41 GACCCACCTTGGACCAGTCCACGGTGCATATCCTCACACGC GACCCACCTTGGACCAGTCCACAGTGCATATCCTCACACGC < 41bp 0.501182566900322 0.705318721221661 NA NA prediction 0.408272308642678 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714438 chr16:57714440 synonymous SNV . 0 23 hm6Am_associated_SNPs_4096 0 0 0 0 2 ADGRG3 chr16:57714529 5'GT 57714529 Upstream 90bp
1890 chr17 7943287 7943287 1 + G A GBM 7943289 + 7943269 7943309 41 GGAGGAGCTTCAGGCCCGGCAGGAGATGTACCAGTGAGGAG GGAGGAGCTTCAGGCCCGACAGGAGATGTACCAGTGAGGAG < 41bp 0.468514900673328 0.704087969063504 NA NA prediction 0.408175938127008 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7943289 chr17:7943287 synonymous SNV . 0 19 hm6Am_associated_SNPs_4098 0 0 0 0 2 ALOX15B chr17:7943220 3'AG 7943220 Downstream 68bp
1891 chr17 7943287 7943287 1 + G A GBM 7943289 + 7943269 7943309 41 GGAGGAGCTTCAGGCCCGGCAGGAGATGTACCAGTGAGGAG GGAGGAGCTTCAGGCCCGACAGGAGATGTACCAGTGAGGAG < 41bp 0.468514900673328 0.704087969063504 NA NA prediction 0.408175938127008 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7943289 chr17:7943287 synonymous SNV . 0 19 hm6Am_associated_SNPs_4098 0 0 0 0 2 ALOX15B chr17:7943301 5'GT 7943301 Upstream 15bp
1892 chr16 58074072 58074072 1 + G T UCEC 58074074 + 58074054 58074094 41 AGCCCTGGACCTTCTCCAGCACTGACCTGCATGGTGAGGAC AGCCCTGGACCTTCTCCATCACTGACCTGCATGGTGAGGAC < 41bp 0.283057021041477 0.704061651265593 NA NA prediction 0.408123302531187 Functional Gain - MMP15 ENSG00000102996 CDS Human protein_coding chr16:58074074 chr16:58074072 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_4100 0 0 0 0 1 MMP15 chr16:58074086 5'GT 58074086 Upstream 15bp
1893 chr12 111082836 111082836 1 + G A rs118096349 111082834 + 111082814 111082854 41 GAAGAGCCTGCTGTGGGGCCAGGGCTTCCCAGATTACGTGG GAAGAGCCTGCTGTGGGGCCAGAGCTTCCCAGATTACGTGG < 41bp 0.514544395821876 0.718594629796069 NA NA prediction 0.408100467948385 Functional Gain - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111082834 chr12:111082836 nonsynonymous SNV 0.682 0 23 hm6Am_associated_SNPs_4102 0 0 0 0 2 TCTN1 chr12:111082772 3'AG 111082772 Downstream 65bp
1894 chr12 111082836 111082836 1 + G A rs118096349 111082834 + 111082814 111082854 41 GAAGAGCCTGCTGTGGGGCCAGGGCTTCCCAGATTACGTGG GAAGAGCCTGCTGTGGGGCCAGAGCTTCCCAGATTACGTGG < 41bp 0.514544395821876 0.718594629796069 NA NA prediction 0.408100467948385 Functional Gain - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111082834 chr12:111082836 nonsynonymous SNV 0.682 0 23 hm6Am_associated_SNPs_4102 0 0 0 0 2 TCTN1 chr12:111082934 5'GT 111082934 Upstream 99bp
1895 chr9 96408040 96408040 1 + G T TGCT 96408038 + 96408018 96408058 41 GTCTGGCTGTCCCGGCCCCCACGTTCTATGTCAGTGACGTC GTCTGGCTGTCCCGGCCCCCACTTTCTATGTCAGTGACGTC < 41bp 0.506753381980197 0.710769806997597 NA NA prediction 0.408032850034799 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96408038 chr9:96408040 synonymous SNV . 0 23 hm6Am_associated_SNPs_4104 0 0 0 0 1 PHF2 chr9:96408071 5'GT 96408071 Upstream 32bp
1896 chr1 46068012 46068012 1 + G A STAD 46068014 + 46067994 46068034 41 ATTCCAGCAGCTGTCAATGCATTCCAGGAAGCAGCTAGTCT ATTCCAGCAGCTGTCAATACATTCCAGGAAGCAGCTAGTCT < 41bp 0.454929092484735 0.704007456933935 NA NA prediction 0.408014913867869 Functional Gain - NASP ENSG00000132780 CDS Human protein_coding chr1:46068014 chr1:46068012 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_4106 0 0 1 0 2 NASP chr1:46067927 3'AG 46067927 Downstream 86bp
1897 chr1 46068012 46068012 1 + G A STAD 46068014 + 46067994 46068034 41 ATTCCAGCAGCTGTCAATGCATTCCAGGAAGCAGCTAGTCT ATTCCAGCAGCTGTCAATACATTCCAGGAAGCAGCTAGTCT < 41bp 0.454929092484735 0.704007456933935 NA NA prediction 0.408014913867869 Functional Gain - NASP ENSG00000132780 CDS Human protein_coding chr1:46068014 chr1:46068012 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_4106 0 0 1 0 2 NASP chr1:46068037 5'GT 46068037 Upstream 26bp
1898 chr1 6511923 6511923 1 + G A UCEC 6511925 + 6511905 6511945 41 CTGCCTTCTGTGTCACCTGCACTGTCACCAGTCCGGAGCCC CTGCCTTCTGTGTCACCTACACTGTCACCAGTCCGGAGCCC < 41bp 0.450965337842868 0.703949441957902 NA NA prediction 0.407898883915804 Functional Gain - ESPN ENSG00000187017 CDS Human protein_coding chr1:6511925 chr1:6511923 nonsynonymous SNV 0.001 1 19 hm6Am_associated_SNPs_4110 0 0 1 0 1 ESPN chr1:6511893 3'AG 6511893 Downstream 31bp
1899 chrX 70341627 70341627 1 + G T LUAD 70341629 + 70341609 70341649 41 CCTGCTTATGTGCCCTCAGCACCGGCCCCTGGTTTTTGGCC CCTGCTTATGTGCCCTCATCACCGGCCCCTGGTTTTTGGCC < 41bp 0.286302510696116 0.703914113218984 NA NA prediction 0.407828226437968 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70341629 chrX:70341627 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_4114 0 0 0 0 1 MED12 chrX:70341666 5'GT 70341666 Upstream 40bp
1900 chr1 1563530 1563530 1 + G C LUSC 1563532 + 1563512 1563552 41 CCAGGGTTTCACCCTGCTGCACCATGCCTCCCTCAAGGGTC CCAGGGTTTCACCCTGCTCCACCATGCCTCCCTCAAGGGTC < 41bp 0.355448720027648 0.703897112423062 NA NA prediction 0.407794224846125 Functional Gain - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1563532 chr1:1563530 synonymous SNV . 0 19 hm6Am_associated_SNPs_4115 0 0 1 0 1 MIB2 chr1:1563559 5'GT 1563559 Upstream 30bp
1901 chr17 75190963 75190963 1 + G T CESC 75190965 + 75190945 75190985 41 GCCCTCAGCAGCCCCAGCGCACCTGAGCCCGTGGTGGGCAC GCCCTCAGCAGCCCCAGCTCACCTGAGCCCGTGGTGGGCAC < 41bp 0.289912647002924 0.703812623345732 NA NA prediction 0.407625246691464 Functional Gain - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75190965 chr17:75190963 nonsynonymous SNV 0.003 0 19 hm6Am_associated_SNPs_4120 0 0 1 0 1 SEC14L1 chr17:75190993 5'GT 75190993 Upstream 31bp
1902 chr17 79662852 79662852 1 + G T UCEC 79662850 + 79662830 79662870 41 TGGCGAGTCTGAGGAGAGCCACGAGCAGTTCCTGAAGGCGC TGGCGAGTCTGAGGAGAGCCACTAGCAGTTCCTGAAGGCGC < 41bp 0.499150830183233 0.703753911944131 NA NA prediction 0.407507823888263 Functional Gain - HGS ENSG00000185359 CDS Human protein_coding chr17:79662850 chr17:79662852 stopgain 0.990 0 23 hm6Am_associated_SNPs_4121 0 0 1 0 1 HGS chr17:79662816 3'AG 79662816 Downstream 37bp
1903 chr12 123270314 123270314 1 + G A UCEC 123270312 + 123270292 123270332 41 GTTAGTGGAACTTTCTGCCCAGGTAGGACAGCTACAAGCTC GTTAGTGGAACTTTCTGCCCAGATAGGACAGCTACAAGCTC < 41bp 0.501724154466441 0.70547496898984 NA NA prediction 0.407501629046798 Functional Gain - CCDC62 ENSG00000130783 CDS Human protein_coding chr12:123270312 chr12:123270314 nonsynonymous SNV 1.000 0 23 hm6Am_associated_SNPs_4122 0 0 1 1 2 CCDC62 chr12:123270266 3'AG 123270266 Downstream 49bp
1904 chr12 123270314 123270314 1 + G A UCEC 123270312 + 123270292 123270332 41 GTTAGTGGAACTTTCTGCCCAGGTAGGACAGCTACAAGCTC GTTAGTGGAACTTTCTGCCCAGATAGGACAGCTACAAGCTC < 41bp 0.501724154466441 0.70547496898984 NA NA prediction 0.407501629046798 Functional Gain - CCDC62 ENSG00000130783 CDS Human protein_coding chr12:123270312 chr12:123270314 nonsynonymous SNV 1.000 0 23 hm6Am_associated_SNPs_4122 0 0 1 1 2 CCDC62 chr12:123270367 5'GT 123270367 Upstream 54bp
1905 chr3 184056275 184056275 1 + G A rs115148262 184056273 + 184056253 184056293 41 GAACCCTCCGAGGCTGGAGCAGGTCCTCCCGCCCTTCCTCG GAACCCTCCGAGGCTGGAGCAGATCCTCCCGCCCTTCCTCG < 41bp 0.498335699433043 0.703663793594735 NA NA prediction 0.407327587189471 Functional Gain - FAM131A ENSG00000175182 CDS Human protein_coding chr3:184056273 chr3:184056275 synonymous SNV . 0 23 hm6Am_associated_SNPs_4127 0 0 0 0 1 FAM131A chr3:184056317 5'GT 184056317 Upstream 43bp
1906 chr19 50882274 50882274 1 + G A STAD 50882276 + 50882256 50882296 41 CAGCCCTGGCCCCTGGGCGCAGACCCCCAGTCCCGAGATGC CAGCCCTGGCCCCTGGGCACAGACCCCCAGTCCCGAGATGC < 41bp 0.437922164396782 0.703622295491379 NA NA prediction 0.407244590982758 Functional Gain - NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50882276 chr19:50882274 nonsynonymous SNV 0.997 1 19 hm6Am_associated_SNPs_4131 0 0 0 0 1 NR1H2 chr19:50882259 3'AG 50882259 Downstream 16bp
1907 chr5 43277354 43277354 1 + G T COAD 43277356 + 43277336 43277376 41 AGCTCTTCGGAAAAATTAGCACTGAGGGGAAGCTCTCTGAA AGCTCTTCGGAAAAATTATCACTGAGGGGAAGCTCTCTGAA < 41bp 0.277123908842706 0.703567352536097 NA NA prediction 0.407134705072195 Functional Gain - NIM1K ENSG00000177453 CDS Human protein_coding chr5:43277356 chr5:43277354 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_4136 0 0 0 0 1 NIM1K chr5:43277427 5'GT 43277427 Upstream 74bp
1908 chr14 92790234 92790234 1 + G A STAD 92790236 + 92790216 92790256 41 GAGGCGAGAGATGCTGCCGCAGCAAGTCGGCTTCGTGTGCG GAGGCGAGAGATGCTGCCACAGCAAGTCGGCTTCGTGTGCG < 41bp 0.634930438022645 0.838460091489146 NA NA prediction 0.407059306933003 Functional Gain - SLC24A4 ENSG00000140090 CDS Human protein_coding chr14:92790236 chr14:92790234 synonymous SNV . 0 19 hm6Am_associated_SNPs_4138 0 0 0 0 1 SLC24A4 chr14:92790304 5'GT 92790304 Upstream 71bp
1909 chr1 236959022 236959022 1 + G T ESCA 236959020 + 236959000 236959040 41 CAACATGTCACCCGCGCTCCAAGACCTGTCGCAACCCGGTA CAACATGTCACCCGCGCTCCAATACCTGTCGCAACCCGGTA < 41bp 0.497542054859333 0.703523401278695 NA NA prediction 0.407046802557391 Functional Gain - MTR ENSG00000116984 CDS Human protein_coding chr1:236959020 chr1:236959022 nonsynonymous SNV 0.184 1 23 hm6Am_associated_SNPs_4140 0 0 1 0 1 MTR chr1:236959037 5'GT 236959037 Upstream 16bp
1910 chr5 137419943 137419943 1 + G C OV 137419942 + 137419922 137419962 41 TTTTCTCTTTTTGGTAGGTCAGTGAACAATTTCCTGATAAC TTTTCTCTTTTTGGTAGGTCACTGAACAATTTCCTGATAAC < 41bp 0.454668237638335 0.703445275425725 NA NA prediction 0.406890550851451 Functional Gain - WNT8A ENSG00000061492 CDS Human protein_coding chr5:137419942 chr5:137419943 nonsynonymous SNV 1.000 1 22 hm6Am_associated_SNPs_4146 0 0 0 0 2 WNT8A chr5:137419939 3'AG 137419939 Downstream 5bp
1911 chr5 137419943 137419943 1 + G C OV 137419942 + 137419922 137419962 41 TTTTCTCTTTTTGGTAGGTCAGTGAACAATTTCCTGATAAC TTTTCTCTTTTTGGTAGGTCACTGAACAATTTCCTGATAAC < 41bp 0.454668237638335 0.703445275425725 NA NA prediction 0.406890550851451 Functional Gain - WNT8A ENSG00000061492 CDS Human protein_coding chr5:137419942 chr5:137419943 nonsynonymous SNV 1.000 1 22 hm6Am_associated_SNPs_4146 0 0 0 0 2 WNT8A chr5:137419972 5'GT 137419972 Upstream 30bp
1912 chr10 114044409 114044409 1 + G A SKCM 114044407 + 114044387 114044427 41 GCTGTGTTACAATGGGGTCCACGAAGGAGGTTACTACCAAT GCTGTGTTACAATGGGGTCCACAAAGGAGGTTACTACCAAT < 41bp 0.506378923143761 0.709816462267254 NA NA prediction 0.406875078246985 Functional Gain - TECTB ENSG00000119913 CDS Human protein_coding chr10:114044407 chr10:114044409 nonsynonymous SNV 0.999 2 23 hm6Am_associated_SNPs_4147 0 0 0 0 1 TECTB chr10:114044483 5'GT 114044483 Upstream 75bp
1913 chr17 14248428 14248428 1 + G A COAD 14248430 + 14248410 14248450 41 CGCGGGAGGCCCCTGCGCGCATCTCGGCCATGTCCAAGGAC CGCGGGAGGCCCCTGCGCACATCTCGGCCATGTCCAAGGAC < 41bp 0.446674417380405 0.70342489269565 NA NA prediction 0.406849785391299 Functional Gain - HS3ST3B1 ENSG00000125430 CDS Human protein_coding chr17:14248430 chr17:14248428 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_4148 0 0 0 0 1 HS3ST3B1 chr17:14248345 3'AG 14248345 Downstream 84bp
1914 chr3 148586735 148586735 1 + G T ACC 148586733 + 148586713 148586753 41 GTATCCAGGTGCCACCCACCACGTAGCTGCTAATATGATGG GTATCCAGGTGCCACCCACCACTTAGCTGCTAATATGATGG < 41bp 0.494851576057432 0.703419024787496 NA NA prediction 0.406838049574992 Functional Gain - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148586733 chr3:148586735 nonsynonymous SNV 0.000 1 23 hm6Am_associated_SNPs_4149 0 0 0 0 2 CPA3 chr3:148586702 3'AG 148586702 Downstream 34bp
1915 chr3 148586735 148586735 1 + G T ACC 148586733 + 148586713 148586753 41 GTATCCAGGTGCCACCCACCACGTAGCTGCTAATATGATGG GTATCCAGGTGCCACCCACCACTTAGCTGCTAATATGATGG < 41bp 0.494851576057432 0.703419024787496 NA NA prediction 0.406838049574992 Functional Gain - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148586733 chr3:148586735 nonsynonymous SNV 0.000 1 23 hm6Am_associated_SNPs_4149 0 0 0 0 2 CPA3 chr3:148586826 5'GT 148586826 Upstream 92bp
1916 chr14 24542791 24542791 1 + G A SKCM 24542793 + 24542773 24542813 41 GTATTTTTTTGAGGAGAAGCAGCCCCTGCAGTTCCACGTGT GTATTTTTTTGAGGAGAAACAGCCCCTGCAGTTCCACGTGT < 41bp 0.554467729594628 0.757836775544419 NA NA prediction 0.406738091899583 Functional Gain - CPNE6 ENSG00000100884 CDS Human protein_coding chr14:24542793 chr14:24542791 synonymous SNV . 0 19 hm6Am_associated_SNPs_4150 0 0 0 0 2 CPNE6 chr14:24542708 3'AG 24542708 Downstream 84bp
1917 chr14 24542791 24542791 1 + G A SKCM 24542793 + 24542773 24542813 41 GTATTTTTTTGAGGAGAAGCAGCCCCTGCAGTTCCACGTGT GTATTTTTTTGAGGAGAAACAGCCCCTGCAGTTCCACGTGT < 41bp 0.554467729594628 0.757836775544419 NA NA prediction 0.406738091899583 Functional Gain - CPNE6 ENSG00000100884 CDS Human protein_coding chr14:24542793 chr14:24542791 synonymous SNV . 0 19 hm6Am_associated_SNPs_4150 0 0 0 0 2 CPNE6 chr14:24542887 5'GT 24542887 Upstream 97bp
1918 chr20 36305449 36305449 1 + G A rs183839810 36305451 + 36305431 36305471 41 CGGCGGATGAAGCCTCACGCAGAACAGATACAGTTGCTTGG CGGCGGATGAAGCCTCACACAGAACAGATACAGTTGCTTGG < 41bp 0.615644961965846 0.819013204467169 NA NA prediction 0.406736485002645 Functional Gain - LOC100287792 ENSG00000204117 ncRNA_exonic Human lincRNA chr20:36305451 chr20:36305449 . . 0 19 hm6Am_associated_SNPs_4151 0 0 0 0 1 LOC100287792 chr20:36305488 5'GT 36305488 Upstream 40bp
1919 chr16 57144714 57144714 1 + G C OV 57144713 + 57144693 57144733 41 GGCAGCCCCCATGGGCCCCCAGTATTGCGTGTGCAAGGTGG GGCAGCCCCCATGGGCCCCCACTATTGCGTGTGCAAGGTGG < 41bp 0.432808754473749 0.703361834934753 NA NA prediction 0.406723669869505 Functional Gain - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144713 chr16:57144714 nonsynonymous SNV 0.793 1 22 hm6Am_associated_SNPs_4152 0 0 1 0 1 CPNE2 chr16:57144620 3'AG 57144620 Downstream 95bp
1920 chr10 131964822 131964822 1 + G T KIRP 131964824 + 131964804 131964844 41 AACATAATATTCAGTTTAGCAGTTTTGATATCTTCTCAGAT AACATAATATTCAGTTTATCAGTTTTGATATCTTCTCAGAT < 41bp 0.294153244376477 0.703298672421954 NA NA prediction 0.406597344843907 Functional Gain - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131964824 chr10:131964822 nonsynonymous SNV 0.999 4 19 hm6Am_associated_SNPs_4154 0 0 1 0 1 GLRX3 chr10:131964771 3'AG 131964771 Downstream 52bp
1921 chr2 131674987 131674987 1 + G C rs370877068 131674989 + 131674969 131675009 41 GACGCTAAACCAAGATGAGCAGAAGGAAGAGAGCAGGGAAG GACGCTAAACCAAGATGACCAGAAGGAAGAGAGCAGGGAAG < 41bp 0.637371166585062 0.840645727030066 NA NA prediction 0.406549120890007 Functional Gain - ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131674989 chr2:131674987 nonsynonymous SNV 0.703 0 19 hm6Am_associated_SNPs_4156 0 0 0 0 2 ARHGEF4 chr2:131674970 3'AG 131674970 Downstream 18bp
1922 chr2 131674987 131674987 1 + G C rs370877068 131674989 + 131674969 131675009 41 GACGCTAAACCAAGATGAGCAGAAGGAAGAGAGCAGGGAAG GACGCTAAACCAAGATGACCAGAAGGAAGAGAGCAGGGAAG < 41bp 0.637371166585062 0.840645727030066 NA NA prediction 0.406549120890007 Functional Gain - ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131674989 chr2:131674987 nonsynonymous SNV 0.703 0 19 hm6Am_associated_SNPs_4156 0 0 0 0 2 ARHGEF4 chr2:131675071 5'GT 131675071 Upstream 85bp
1923 chr7 100552975 100552975 1 + G C BLCA 100552974 + 100552954 100552994 41 TCAGCTCCAGACCAGATGCCAGAATGGGGGTCAGTGGGATG TCAGCTCCAGACCAGATGCCACAATGGGGGTCAGTGGGATG < 41bp 0.471879286490394 0.703245841932619 NA NA prediction 0.406491683865237 Functional Gain - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100552974 chr7:100552975 nonsynonymous SNV 0.001 1 22 hm6Am_associated_SNPs_4158 0 0 0 0 2 MUC3A chr7:100552881 3'AG 100552881 Downstream 95bp
1924 chr7 100552975 100552975 1 + G C BLCA 100552974 + 100552954 100552994 41 TCAGCTCCAGACCAGATGCCAGAATGGGGGTCAGTGGGATG TCAGCTCCAGACCAGATGCCACAATGGGGGTCAGTGGGATG < 41bp 0.471879286490394 0.703245841932619 NA NA prediction 0.406491683865237 Functional Gain - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100552974 chr7:100552975 nonsynonymous SNV 0.001 1 22 hm6Am_associated_SNPs_4158 0 0 0 0 2 MUC3A chr7:100553066 5'GT 100553066 Upstream 92bp
1925 chr17 48252649 48252649 1 + G T STAD 48252647 + 48252627 48252667 41 GGTCCACCACTGCACCATCCACGGGAACACAGAGGAGCTGC GGTCCACCACTGCACCATCCACTGGAACACAGAGGAGCTGC < 41bp 0.496835027566464 0.703242694486406 NA NA prediction 0.406485388972812 Functional Gain - SGCA ENSG00000108823 CDS Human protein_coding chr17:48252647 chr17:48252649 nonsynonymous SNV 0.972 4 23 hm6Am_associated_SNPs_4159 0 0 0 0 1 SGCA chr17:48252618 3'AG 48252618 Downstream 32bp
1926 chr1 160125921 160125921 1 + G T UCEC 160125919 + 160125899 160125939 41 AGGCCAAGAGCTCCAAGATCATGGAGTCTTTTAAGAACATG AGGCCAAGAGCTCCAAGATCATTGAGTCTTTTAAGAACATG < 41bp 0.537134275861869 0.740367477919556 NA NA prediction 0.406466404115374 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160125919 chr1:160125921 nonsynonymous SNV 1.000 2 23 hm6Am_associated_SNPs_4160 0 0 0 0 2 ATP1A4 chr1:160125835 3'AG 160125835 Downstream 87bp
1927 chr1 160125921 160125921 1 + G T UCEC 160125919 + 160125899 160125939 41 AGGCCAAGAGCTCCAAGATCATGGAGTCTTTTAAGAACATG AGGCCAAGAGCTCCAAGATCATTGAGTCTTTTAAGAACATG < 41bp 0.537134275861869 0.740367477919556 NA NA prediction 0.406466404115374 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160125919 chr1:160125921 nonsynonymous SNV 1.000 2 23 hm6Am_associated_SNPs_4160 0 0 0 0 2 ATP1A4 chr1:160125948 5'GT 160125948 Upstream 28bp
1928 chr9 91606035 91606035 1 + G T SARC 91606033 + 91606013 91606053 41 CAGACCTCGGACCTGGTTCCAAGCCTGTTCCCGCTGGGTCT CAGACCTCGGACCTGGTTCCAATCCTGTTCCCGCTGGGTCT < 41bp 0.493043381085522 0.703193328360818 NA NA prediction 0.406386656721636 Functional Gain - C9orf47 ENSG00000186354 CDS Human protein_coding chr9:91606033 chr9:91606035 nonsynonymous SNV 0.003 0 23 hm6Am_associated_SNPs_4162 0 0 0 0 1 C9orf47 chr9:91606099 5'GT 91606099 Upstream 65bp
1929 chr9 139693615 139693615 1 + G A rs140082981 139693613 + 139693593 139693633 41 ATATGGACCAGAACAAGGCCACGCTGGCCCTCCTGCGCAGC ATATGGACCAGAACAAGGCCACACTGGCCCTCCTGCGCAGC < 41bp 0.505915233415372 0.709097674913213 NA NA prediction 0.406364882995682 Functional Gain - CCDC183 ENSG00000213213;ENSG00000272896 CDS Human other chr9:139693613 chr9:139693615 synonymous SNV . 0 23 hm6Am_associated_SNPs_4163 0 0 0 0 2 CCDC183 chr9:139693554 3'AG 139693554 Downstream 62bp
1930 chr9 139693615 139693615 1 + G A rs140082981 139693613 + 139693593 139693633 41 ATATGGACCAGAACAAGGCCACGCTGGCCCTCCTGCGCAGC ATATGGACCAGAACAAGGCCACACTGGCCCTCCTGCGCAGC < 41bp 0.505915233415372 0.709097674913213 NA NA prediction 0.406364882995682 Functional Gain - CCDC183 ENSG00000213213;ENSG00000272896 CDS Human other chr9:139693613 chr9:139693615 synonymous SNV . 0 23 hm6Am_associated_SNPs_4163 0 0 0 0 2 CCDC183 chr9:139693675 5'GT 139693675 Upstream 61bp
1931 chr17 1657495 1657495 1 + G C UCEC 1657494 + 1657474 1657514 41 GGTGTCCGGCGTGCAGCATCAGTCCACCCTGGAGCTCAGCG GGTGTCCGGCGTGCAGCATCACTCCACCCTGGAGCTCAGCG < 41bp 0.632246085764389 0.835403314021704 NA NA prediction 0.40631445651463 Functional Gain - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1657494 chr17:1657495 nonsynonymous SNV 0.438 4 22 hm6Am_associated_SNPs_4165 0 0 1 0 1 SERPINF2 chr17:1657416 3'AG 1657416 Downstream 80bp
1932 chr10 70987019 70987019 1 + G T COAD 70987017 + 70986997 70987037 41 ATGACACCCTTTTGGACATCATGAGGCGGTTCCGGGCTGAG ATGACACCCTTTTGGACATCATTAGGCGGTTCCGGGCTGAG < 41bp 0.525105843888334 0.728255264263902 NA NA prediction 0.406298840751137 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:70987017 chr10:70987019 nonsynonymous SNV 0.808 2 23 hm6Am_associated_SNPs_4166 0 0 0 0 1 HKDC1 chr10:70986963 3'AG 70986963 Downstream 57bp
1933 chr11 62554028 62554028 1 + G A UCEC 62554030 + 62554010 62554050 41 AAGATGAAGGCCCAGGCAGCAGAGCCCAACAGGGGTGGCCC AAGATGAAGGCCCAGGCAACAGAGCCCAACAGGGGTGGCCC < 41bp 0.441742149750937 0.703040399120634 NA NA prediction 0.406080798241267 Functional Gain - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62554030 chr11:62554028 nonsynonymous SNV 1.000 0 19 hm6Am_associated_SNPs_4172 0 0 0 0 1 TAF6L chr11:62553989 3'AG 62553989 Downstream 40bp
1934 chr20 25259047 25259047 1 + G T COAD 25259045 + 25259025 25259065 41 TCCGCCGCTTCAAGTCGTCCAAGTTCGGCTGCCGGGACCCT TCCGCCGCTTCAAGTCGTCCAATTTCGGCTGCCGGGACCCT < 41bp 0.496325915946142 0.702991227373297 NA NA prediction 0.405982454746595 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25259045 chr20:25259047 nonsynonymous SNV 0.898 2 23 hm6Am_associated_SNPs_4175 0 0 1 0 2 PYGB chr20:25258955 3'AG 25258955 Downstream 93bp
1935 chr20 25259047 25259047 1 + G T COAD 25259045 + 25259025 25259065 41 TCCGCCGCTTCAAGTCGTCCAAGTTCGGCTGCCGGGACCCT TCCGCCGCTTCAAGTCGTCCAATTTCGGCTGCCGGGACCCT < 41bp 0.496325915946142 0.702991227373297 NA NA prediction 0.405982454746595 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25259045 chr20:25259047 nonsynonymous SNV 0.898 2 23 hm6Am_associated_SNPs_4175 0 0 1 0 2 PYGB chr20:25259098 5'GT 25259098 Upstream 52bp
1936 chr1 151584976 151584976 1 + G A COAD 151584978 + 151584958 151584998 41 GGGTGCGCAAGGGGGACCGCATCCTGGAGGTGTGAGTATCG GGGTGCGCAAGGGGGACCACATCCTGGAGGTGTGAGTATCG < 41bp 0.630925008752254 0.833911195127632 NA NA prediction 0.405972372750755 Functional Gain - SNX27 ENSG00000143376 CDS Human protein_coding chr1:151584978 chr1:151584976 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_4176 0 0 1 0 1 SNX27 chr1:151584988 5'GT 151584988 Upstream 13bp
1937 chr2 239057685 239057685 1 + G T BRCA 239057683 + 239057663 239057703 41 TCGCCTCGCCCTTCCTGCCCAAGTACCTGTCCTCGCCTCGC TCGCCTCGCCCTTCCTGCCCAATTACCTGTCCTCGCCTCGC < 41bp 0.524213628542015 0.727130194972185 NA NA prediction 0.405833132860339 Functional Gain - KLHL30 ENSG00000168427 CDS Human protein_coding chr2:239057683 chr2:239057685 nonsynonymous SNV 1.000 3 23 hm6Am_associated_SNPs_4181 0 0 0 0 1 KLHL30 chr2:239057648 3'AG 239057648 Downstream 38bp
1938 chr5 141309193 141309193 1 + G A ESCA 141309191 + 141309171 141309211 41 GCCCCGATGGCCCAGCTCCCAGGCACACTGGCCTCAGGGAA GCCCCGATGGCCCAGCTCCCAGACACACTGGCCTCAGGGAA < 41bp 0.496658145278768 0.702912924298056 NA NA prediction 0.405825848596111 Functional Gain - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141309191 chr5:141309193 synonymous SNV . 0 23 hm6Am_associated_SNPs_4182 0 0 0 0 1 KIAA0141 chr5:141309147 3'AG 141309147 Downstream 47bp
1939 chr5 7396525 7396525 1 + G A LIHC 7396527 + 7396507 7396547 41 TCTACGAGTCCTACTACTGCATGAGCCAGCAGCACCCGCTC TCTACGAGTCCTACTACTACATGAGCCAGCAGCACCCGCTC < 41bp 0.454543746953546 0.702890561930948 NA NA prediction 0.405781123861897 Functional Gain - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7396527 chr5:7396525 nonsynonymous SNV 0.998 0 19 hm6Am_associated_SNPs_4183 0 0 0 0 1 ADCY2 chr5:7396619 5'GT 7396619 Upstream 95bp
1940 chrX 100486680 100486680 1 + G T LUAD 100486678 + 100486658 100486698 41 GGATGCCCTTACACCCTCCCACGATGTCATGACTGGCAGGC GGATGCCCTTACACCCTCCCACTATGTCATGACTGGCAGGC < 41bp 0.503670858721227 0.706542342322878 NA NA prediction 0.405742967203303 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100486678 chrX:100486680 nonsynonymous SNV 1.000 1 23 hm6Am_associated_SNPs_4185 0 0 0 0 1 DRP2 chrX:100486753 5'GT 100486753 Upstream 74bp
1941 chr11 65343808 65343808 1 + G A UCEC 65343810 + 65343790 65343830 41 AGCGCCTGCAGCGCGTGGGCAAGCGGGCGGCCAAGTTCCAG AGCGCCTGCAGCGCGTGGACAAGCGGGCGGCCAAGTTCCAG < 41bp 0.440006320390983 0.702860194954221 NA NA prediction 0.405720389908443 Functional Gain - EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65343810 chr11:65343808 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_4187 0 0 1 0 1 EHBP1L1 chr11:65343877 5'GT 65343877 Upstream 70bp
1942 chr1 24668708 24668708 1 + G A STAD 24668710 + 24668690 24668730 41 CCTATGACTGTGGCTTGGGCACTGAGCGCCTGGTACACCGT CCTATGACTGTGGCTTGGACACTGAGCGCCTGGTACACCGT < 41bp 0.446331340746352 0.702841078590963 NA NA prediction 0.405682157181927 Functional Gain - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24668710 chr1:24668708 nonsynonymous SNV 0.428 1 19 hm6Am_associated_SNPs_4190 0 0 0 0 1 GRHL3 chr1:24668763 5'GT 24668763 Upstream 56bp
1943 chr15 69003991 69003991 1 + G T LUAD 69003989 + 69003969 69004009 41 ACGGCAGCCTGCTCACCACCACGTGCAAGGACAAGAAGCTG ACGGCAGCCTGCTCACCACCACTTGCAAGGACAAGAAGCTG < 41bp 0.545568483628447 0.748364896886136 NA NA prediction 0.405592826515378 Functional Gain - CORO2B ENSG00000103647 CDS Human protein_coding chr15:69003989 chr15:69003991 synonymous SNV . 0 23 hm6Am_associated_SNPs_4193 0 0 0 0 1 CORO2B chr15:69004045 5'GT 69004045 Upstream 55bp
1944 chr13 41639360 41639360 1 + G T COAD 41639362 + 41639342 41639382 41 GCATCAAAGGAGTTTGCTGCAATGGAGGCAGCTGCCCTGAA GCATCAAAGGAGTTTGCTTCAATGGAGGCAGCTGCCCTGAA < 41bp 0.283326412810182 0.702770626112914 NA NA prediction 0.405541252225828 Functional Gain - WBP4 ENSG00000120688 CDS Human protein_coding chr13:41639362 chr13:41639360 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_4194 0 0 1 0 2 WBP4 chr13:41639300 3'AG 41639300 Downstream 61bp
1945 chr13 41639360 41639360 1 + G T COAD 41639362 + 41639342 41639382 41 GCATCAAAGGAGTTTGCTGCAATGGAGGCAGCTGCCCTGAA GCATCAAAGGAGTTTGCTTCAATGGAGGCAGCTGCCCTGAA < 41bp 0.283326412810182 0.702770626112914 NA NA prediction 0.405541252225828 Functional Gain - WBP4 ENSG00000120688 CDS Human protein_coding chr13:41639362 chr13:41639360 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_4194 0 0 1 0 2 WBP4 chr13:41639423 5'GT 41639423 Upstream 64bp
1946 chr16 2752431 2752431 1 + G T LUAD 2752433 + 2752413 2752453 41 TGTGGTGTCCAAGGAGCTGCACAACACCCCGTACGGTACGG TGTGGTGTCCAAGGAGCTTCACAACACCCCGTACGGTACGG < 41bp 0.28202965608275 0.702705242801008 NA NA prediction 0.405410485602016 Functional Gain - KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2752433 chr16:2752431 nonsynonymous SNV 0.998 1 19 hm6Am_associated_SNPs_4197 0 0 1 0 2 KCTD5 chr16:2752354 3'AG 2752354 Downstream 78bp
1947 chr16 2752431 2752431 1 + G T LUAD 2752433 + 2752413 2752453 41 TGTGGTGTCCAAGGAGCTGCACAACACCCCGTACGGTACGG TGTGGTGTCCAAGGAGCTTCACAACACCCCGTACGGTACGG < 41bp 0.28202965608275 0.702705242801008 NA NA prediction 0.405410485602016 Functional Gain - KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2752433 chr16:2752431 nonsynonymous SNV 0.998 1 19 hm6Am_associated_SNPs_4197 0 0 1 0 2 KCTD5 chr16:2752479 5'GT 2752479 Upstream 49bp
1948 chr20 5948523 5948523 1 + G T CHOL 5948525 + 5948505 5948545 41 TTCCTTTTGTATATTGAAGCAAATTCTATTAGTAATAGCAA TTCCTTTTGTATATTGAATCAAATTCTATTAGTAATAGCAA < 41bp 0.309685219852538 0.702569927747735 NA NA prediction 0.405139855495469 Functional Gain - MCM8;MCM8 ENSG00000125885;ENSG00000125885 exonic;splicing Human protein_coding chr20:5948525 chr20:5948523 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_4209 0 0 1 0 1 MCM8 chr20:5948476 3'AG 5948476 Downstream 48bp
1949 chr11 9610042 9610042 1 + G A COAD 9610044 + 9610024 9610064 41 GCTGCAGCTGAGGAAAGAGCACTCTTCACTGACCGGATGGC GCTGCAGCTGAGGAAAGAACACTCTTCACTGACCGGATGGC < 41bp 0.635526679798866 0.83807953178092 NA NA prediction 0.405105703964107 Functional Gain - WEE1 ENSG00000166483 CDS Human protein_coding chr11:9610044 chr11:9610042 nonsynonymous SNV 0.999 0 19 hm6Am_associated_SNPs_4211 0 0 1 0 1 WEE1 chr11:9609996 3'AG 9609996 Downstream 47bp
1950 chr4 123542076 123542076 1 - C A LUSC 123542078 - 123542058 123542098 41 GGTCCACAAATCAAGCTCCCAAGGTCAAGATCGCCACATGA GGTCCACAAATCAAGCTCCCAATGTCAAGATCGCCACATGA < 41bp 0.491342805329483 0.702538726012309 NA NA prediction 0.405077452024618 Functional Gain - IL21 ENSG00000138684 CDS Human protein_coding chr4:123542078 chr4:123542076 nonsynonymous SNV 0.281 3 23 hm6Am_associated_SNPs_4213 0 0 0 0 1 IL21 chr4:123541999 5'GT 123541999 Upstream 78bp
1951 chr10 121671606 121671606 1 + G T LUAD 121671604 + 121671584 121671624 41 TGCCAGATGAATGGGGCACCACGCAAGATGGACAGACAAGG TGCCAGATGAATGGGGCACCACTCAAGATGGACAGACAAGG < 41bp 0.505447394894031 0.707947519162359 NA NA prediction 0.405000248536655 Functional Gain - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121671604 chr10:121671606 synonymous SNV . 0 23 hm6Am_associated_SNPs_4217 0 0 1 0 2 SEC23IP chr10:121671556 3'AG 121671556 Downstream 51bp
1952 chr10 121671606 121671606 1 + G T LUAD 121671604 + 121671584 121671624 41 TGCCAGATGAATGGGGCACCACGCAAGATGGACAGACAAGG TGCCAGATGAATGGGGCACCACTCAAGATGGACAGACAAGG < 41bp 0.505447394894031 0.707947519162359 NA NA prediction 0.405000248536655 Functional Gain - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121671604 chr10:121671606 synonymous SNV . 0 23 hm6Am_associated_SNPs_4217 0 0 1 0 2 SEC23IP chr10:121671676 5'GT 121671676 Upstream 71bp
1953 chr6 3129333 3129333 1 + G A rs74772741 3129335 + 3129315 3129355 41 AGTGATGGGGGCATAACCGCACTCATTGCTGCTGCAAAATA AGTGATGGGGGCATAACCACACTCATTGCTGCTGCAAAATA < 41bp 0.439772026483873 0.702478729139053 NA NA prediction 0.404957458278106 Functional Gain - BPHL ENSG00000137274 CDS Human protein_coding chr6:3129335 chr6:3129333 nonsynonymous SNV 0.060 4 19 hm6Am_associated_SNPs_4219 0 0 1 6 1 BPHL chr6:3129279 3'AG 3129279 Downstream 55bp
1954 chr19 18277041 18277041 1 + G C LUSC 18277040 + 18277020 18277060 41 GATCTTTGAAGAGCAGGGCCAGACTCAAGAGAAATGCAGCA GATCTTTGAAGAGCAGGGCCACACTCAAGAGAAATGCAGCA < 41bp 0.431900371157826 0.702442776386894 NA NA prediction 0.404885552773789 Functional Gain - PIK3R2 ENSG00000105647;ENSG00000268173 CDS Human other chr19:18277040 chr19:18277041 nonsynonymous SNV 0.997 2 22 hm6Am_associated_SNPs_4221 0 0 1 1 2 PIK3R2 chr19:18276970 3'AG 18276970 Downstream 72bp
1955 chr19 18277041 18277041 1 + G C LUSC 18277040 + 18277020 18277060 41 GATCTTTGAAGAGCAGGGCCAGACTCAAGAGAAATGCAGCA GATCTTTGAAGAGCAGGGCCACACTCAAGAGAAATGCAGCA < 41bp 0.431900371157826 0.702442776386894 NA NA prediction 0.404885552773789 Functional Gain - PIK3R2 ENSG00000105647;ENSG00000268173 CDS Human other chr19:18277040 chr19:18277041 nonsynonymous SNV 0.997 2 22 hm6Am_associated_SNPs_4221 0 0 1 1 2 PIK3R2 chr19:18277112 5'GT 18277112 Upstream 72bp
1956 chr17 79660731 79660731 1 + G C BLCA 79660733 + 79660713 79660753 41 GCAGGAGGAGGAGGAGCTGCAGCTGGCCCTGGCGCTGTCAC GCAGGAGGAGGAGGAGCTCCAGCTGGCCCTGGCGCTGTCAC < 41bp 0.368215292420421 0.702406385930435 NA NA prediction 0.404812771860869 Functional Gain - HGS ENSG00000185359 CDS Human protein_coding chr17:79660733 chr17:79660731 synonymous SNV . 0 19 hm6Am_associated_SNPs_4223 0 0 1 0 2 HGS chr17:79660684 3'AG 79660684 Downstream 48bp
1957 chr17 79660731 79660731 1 + G C BLCA 79660733 + 79660713 79660753 41 GCAGGAGGAGGAGGAGCTGCAGCTGGCCCTGGCGCTGTCAC GCAGGAGGAGGAGGAGCTCCAGCTGGCCCTGGCGCTGTCAC < 41bp 0.368215292420421 0.702406385930435 NA NA prediction 0.404812771860869 Functional Gain - HGS ENSG00000185359 CDS Human protein_coding chr17:79660733 chr17:79660731 synonymous SNV . 0 19 hm6Am_associated_SNPs_4223 0 0 1 0 2 HGS chr17:79660782 5'GT 79660782 Upstream 52bp
1958 chr1 236881198 236881198 1 + G A LUSC 236881200 + 236881180 236881220 41 CCCACCTAAGGAAAGCCGGCACCCAGATTGAGAACATCGAG CCCACCTAAGGAAAGCCGACACCCAGATTGAGAACATCGAG < 41bp 0.451411943693062 0.702258895854867 NA NA prediction 0.404517791709734 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236881200 chr1:236881198 nonsynonymous SNV 0.990 3 19 hm6Am_associated_SNPs_4229 0 0 0 0 2 ACTN2 chr1:236881158 3'AG 236881158 Downstream 41bp
1959 chr1 236881198 236881198 1 + G A LUSC 236881200 + 236881180 236881220 41 CCCACCTAAGGAAAGCCGGCACCCAGATTGAGAACATCGAG CCCACCTAAGGAAAGCCGACACCCAGATTGAGAACATCGAG < 41bp 0.451411943693062 0.702258895854867 NA NA prediction 0.404517791709734 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236881200 chr1:236881198 nonsynonymous SNV 0.990 3 19 hm6Am_associated_SNPs_4229 0 0 0 0 2 ACTN2 chr1:236881272 5'GT 236881272 Upstream 75bp
1960 chr1 152975724 152975724 1 + G T UCEC 152975722 + 152975702 152975742 41 TCCCTGAGCCAGGCTGTACCAAGGTCCCTGAGCCAGGTTGT TCCCTGAGCCAGGCTGTACCAATGTCCCTGAGCCAGGTTGT < 41bp 0.535947720601559 0.738141630433163 NA NA prediction 0.404387819663208 Functional Gain - SPRR3 ENSG00000163209 CDS Human protein_coding chr1:152975722 chr1:152975724 nonsynonymous SNV 0.002 2 23 hm6Am_associated_SNPs_4233 0 0 0 0 1 SPRR3 chr1:152975701 3'AG 152975701 Downstream 24bp
1961 chr15 67813895 67813895 1 + G C SARC 67813894 + 67813874 67813914 41 CTGGCAGGACCTGGCCCGGCAGAACCGCTTCTTCACGGCGC CTGGCAGGACCTGGCCCGGCACAACCGCTTCTTCACGGCGC < 41bp 0.612368197450154 0.814548694714135 NA NA prediction 0.404360994527964 Functional Gain - C15orf61 ENSG00000189227 CDS Human protein_coding chr15:67813894 chr15:67813895 nonsynonymous SNV 0.250 2 22 hm6Am_associated_SNPs_4234 0 0 1 0 1 C15orf61 chr15:67813932 5'GT 67813932 Upstream 38bp
1962 chr8 145151959 145151959 1 + G C LUSC 145151958 + 145151938 145151978 41 CACCCCAGCTACCATGTCCCAGATAGCCAAGGATGTGTGCA CACCCCAGCTACCATGTCCCACATAGCCAAGGATGTGTGCA < 41bp 0.625921693522636 0.828063822818491 NA NA prediction 0.404284258591711 Functional Gain - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151958 chr8:145151959 nonsynonymous SNV 0.994 4 22 hm6Am_associated_SNPs_4236 0 0 1 0 2 CYC1 chr8:145151937 3'AG 145151937 Downstream 23bp
1963 chr8 145151959 145151959 1 + G C LUSC 145151958 + 145151938 145151978 41 CACCCCAGCTACCATGTCCCAGATAGCCAAGGATGTGTGCA CACCCCAGCTACCATGTCCCACATAGCCAAGGATGTGTGCA < 41bp 0.625921693522636 0.828063822818491 NA NA prediction 0.404284258591711 Functional Gain - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151958 chr8:145151959 nonsynonymous SNV 0.994 4 22 hm6Am_associated_SNPs_4236 0 0 1 0 2 CYC1 chr8:145152037 5'GT 145152037 Upstream 79bp
1964 chr11 70007338 70007338 1 + G T HNSC 70007336 + 70007316 70007356 41 CCATGGCCGCCGCCTTGGCCATGAACTCCTCCCCCTCCGTG CCATGGCCGCCGCCTTGGCCATTAACTCCTCCCCCTCCGTG < 41bp 0.522279639327857 0.724412494836429 NA NA prediction 0.404265711017144 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70007336 chr11:70007338 nonsynonymous SNV 0.996 1 23 hm6Am_associated_SNPs_4238 0 0 0 0 1 ANO1 chr11:70007267 3'AG 70007267 Downstream 72bp
1965 chr2 120997694 120997694 1 + G A rs559294369 120997696 + 120997676 120997716 41 TCTCTGCATGAAACAGCGGCAGTCAGGTGGGTGCCCGCCCT TCTCTGCATGAAACAGCGACAGTCAGGTGGGTGCCCGCCCT < 41bp 0.441558203598819 0.702123362437782 NA NA prediction 0.404246724875565 Functional Gain - TMEM185B;RALB ENSG00000144118 CDS Human protein_coding chr2:120997696 chr2:120997694 synonymous SNV . 0 19 hm6Am_associated_SNPs_4240 0 0 0 0 1 TMEM185B;RALB chr2:120997701 5'GT 120997701 Upstream 8bp
1966 chr16 18602481 18602481 1 + G C CESC 18602480 + 18602460 18602500 41 GGCAGTGGCATGGAGGCTCCAGAGACTGAGCCCTTCCTACG GGCAGTGGCATGGAGGCTCCACAGACTGAGCCCTTCCTACG < 41bp 0.574510823351734 0.776572149492336 NA NA prediction 0.404122652281202 Functional Gain - ABCC6P1 ENSG00000256340 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:18602480 chr16:18602481 . . 0 22 hm6Am_associated_SNPs_4242 0 0 0 0 1 ABCC6P1 chr16:18602426 3'AG 18602426 Downstream 56bp
1967 chr9 125273144 125273144 1 + G C LUSC 125273143 + 125273123 125273163 41 CTGGGCCTCCCCATCCGGCCAGAGCAGCAGGCTGTGTTCTT CTGGGCCTCCCCATCCGGCCACAGCAGCAGGCTGTGTTCTT < 41bp 0.596133081714708 0.798193394267696 NA NA prediction 0.404120625105976 Functional Gain - OR1J2 ENSG00000197233 CDS Human protein_coding chr9:125273143 chr9:125273144 nonsynonymous SNV 0.962 0 22 hm6Am_associated_SNPs_4244 0 0 0 0 1 OR1J2 chr9:125273068 3'AG 125273068 Downstream 77bp
1968 chr19 37835589 37835589 1 + G T OV 37835587 + 37835567 37835607 41 GGAGAGATTTGGAGTGAATCATGAGGGTCAACCACACAGTG GGAGAGATTTGGAGTGAATCATTAGGGTCAACCACACAGTG < 41bp 0.491488882472179 0.702054001807706 NA NA prediction 0.404108003615413 Functional Gain - HKR1 ENSG00000181666 CDS Human protein_coding chr19:37835587 chr19:37835589 nonsynonymous SNV 0.054 1 23 hm6Am_associated_SNPs_4245 0 0 1 0 2 HKR1 chr19:37835512 3'AG 37835512 Downstream 78bp
1969 chr19 37835589 37835589 1 + G T OV 37835587 + 37835567 37835607 41 GGAGAGATTTGGAGTGAATCATGAGGGTCAACCACACAGTG GGAGAGATTTGGAGTGAATCATTAGGGTCAACCACACAGTG < 41bp 0.491488882472179 0.702054001807706 NA NA prediction 0.404108003615413 Functional Gain - HKR1 ENSG00000181666 CDS Human protein_coding chr19:37835587 chr19:37835589 nonsynonymous SNV 0.054 1 23 hm6Am_associated_SNPs_4245 0 0 1 0 2 HKR1 chr19:37835676 5'GT 37835676 Upstream 88bp
1970 chr11 46745004 46745004 1 + G T COAD 46745002 + 46744982 46745022 41 GCAACCCCGACAGCAGCACCACGGGACCCTGGTGCTACACT GCAACCCCGACAGCAGCACCACTGGACCCTGGTGCTACACT < 41bp 0.551904675918865 0.753948912628266 NA NA prediction 0.404088473418801 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46745002 chr11:46745004 synonymous SNV . 0 23 hm6Am_associated_SNPs_4246 0 0 1 4 2 F2 chr11:46744932 3'AG 46744932 Downstream 73bp
1971 chr11 46745004 46745004 1 + G T COAD 46745002 + 46744982 46745022 41 GCAACCCCGACAGCAGCACCACGGGACCCTGGTGCTACACT GCAACCCCGACAGCAGCACCACTGGACCCTGGTGCTACACT < 41bp 0.551904675918865 0.753948912628266 NA NA prediction 0.404088473418801 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46745002 chr11:46745004 synonymous SNV . 0 23 hm6Am_associated_SNPs_4246 0 0 1 4 2 F2 chr11:46745068 5'GT 46745068 Upstream 65bp
1972 chr12 100731216 100731216 1 + G T LUAD 100731218 + 100731198 100731238 41 GCAAAAGAACAAGAGCAGGCACAGAAGCTGAAAAGCCAGCA GCAAAAGAACAAGAGCAGTCACAGAAGCTGAAAAGCCAGCA < 41bp 0.292830333605585 0.70200407124464 NA NA prediction 0.404008142489279 Functional Gain - SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100731218 chr12:100731216 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_4254 0 0 1 0 1 SCYL2 chr12:100731165 3'AG 100731165 Downstream 52bp
1973 chr20 62655977 62655977 1 + G T COAD 62655975 + 62655955 62655995 41 AAGCAGAGGTGCTGTGGCTCATGGGCGCCAAGTCCAAGTGG AAGCAGAGGTGCTGTGGCTCATTGGCGCCAAGTCCAAGTGG < 41bp 0.520687029055837 0.722606193554543 NA NA prediction 0.403838328997412 Functional Gain - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62655975 chr20:62655977 nonsynonymous SNV 0.992 4 23 hm6Am_associated_SNPs_4260 0 0 1 0 2 PRPF6 chr20:62655908 3'AG 62655908 Downstream 70bp
1974 chr20 62655977 62655977 1 + G T COAD 62655975 + 62655955 62655995 41 AAGCAGAGGTGCTGTGGCTCATGGGCGCCAAGTCCAAGTGG AAGCAGAGGTGCTGTGGCTCATTGGCGCCAAGTCCAAGTGG < 41bp 0.520687029055837 0.722606193554543 NA NA prediction 0.403838328997412 Functional Gain - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62655975 chr20:62655977 nonsynonymous SNV 0.992 4 23 hm6Am_associated_SNPs_4260 0 0 1 0 2 PRPF6 chr20:62656046 5'GT 62656046 Upstream 70bp
1975 chr20 33577577 33577577 1 + G T BRCA 33577579 + 33577559 33577599 41 CCATCCTGGAGGAGGAATGCATGTTCCCCAAGGCCTCAGAC CCATCCTGGAGGAGGAATTCATGTTCCCCAAGGCCTCAGAC < 41bp 0.280742343136281 0.701893608299088 NA NA prediction 0.403787216598176 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33577579 chr20:33577577 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_4263 0 0 0 0 1 MYH7B chr20:33577543 3'AG 33577543 Downstream 35bp
1976 chr11 6260493 6260493 1 + G T UCEC 6260491 + 6260471 6260511 41 CCAGTCCCCCAGCCCCATCCAAGGCCAGGTGAGAAGTCCTG CCAGTCCCCCAGCCCCATCCAATGCCAGGTGAGAAGTCCTG < 41bp 0.563284083679266 0.765169826326716 NA NA prediction 0.403771485294899 Functional Gain - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6260491 chr11:6260493 nonsynonymous SNV 0.024 1 23 hm6Am_associated_SNPs_4264 0 0 0 0 1 CNGA4 chr11:6260498 5'GT 6260498 Upstream 6bp
1977 chr6 348140 348140 1 + G A COAD 348142 + 348122 348162 41 AGCGTGACACTGGTGATCGCATACATCATGACCGTCACTGA AGCGTGACACTGGTGATCACATACATCATGACCGTCACTGA < 41bp 0.439113672829801 0.701860130437781 NA NA prediction 0.403720260875561 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348142 chr6:348140 nonsynonymous SNV 0.309 4 19 hm6Am_associated_SNPs_4267 0 0 1 0 1 DUSP22 chr6:348103 3'AG 348103 Downstream 38bp
1978 chr1 156618451 156618451 1 + G A CESC 156618449 + 156618429 156618469 41 GGGGTGCAGAGATTGCCACCACGGGCCAACTGTATGCAGCC GGGGTGCAGAGATTGCCACCACAGGCCAACTGTATGCAGCC < 41bp 0.504445707647233 0.70629297065296 NA NA prediction 0.403694526011456 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156618449 chr1:156618451 synonymous SNV . 0 23 hm6Am_associated_SNPs_4269 0 0 0 0 1 BCAN chr1:156618360 3'AG 156618360 Downstream 92bp
1979 chr11 46747442 46747442 1 + G T LUAD 46747440 + 46747420 46747460 41 GTCACTGTAGCGATGACTCCACGCTCCGAAGGCTCCAGTGT GTCACTGTAGCGATGACTCCACTCTCCGAAGGCTCCAGTGT < 41bp 0.54479636429871 0.746619747401623 NA NA prediction 0.403646766205826 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46747440 chr11:46747442 nonsynonymous SNV 0.104 1 23 hm6Am_associated_SNPs_4271 0 0 1 0 1 F2 chr11:46747409 3'AG 46747409 Downstream 34bp
1980 chr16 67911447 67911447 1 + G A UCEC 67911449 + 67911429 67911469 41 ATATTCGGCAGCCAGAGGGCACGCCACTGAACCACTTTCGC ATATTCGGCAGCCAGAGGACACGCCACTGAACCACTTTCGC < 41bp 0.469803741287672 0.701815889802528 NA NA prediction 0.403631779605056 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67911449 chr16:67911447 nonsynonymous SNV 0.995 1 19 hm6Am_associated_SNPs_4272 0 0 1 0 1 EDC4 chr16:67911412 3'AG 67911412 Downstream 36bp
1981 chr1 21903970 21903970 1 + G T GBM 21903972 + 21903952 21903992 41 CTCCAAGGGCCCCATGGCGCACCTGCTGCACGGCGTCCACG CTCCAAGGGCCCCATGGCTCACCTGCTGCACGGCGTCCACG < 41bp 0.294670504885444 0.701796396581623 NA NA prediction 0.403592793163245 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21903972 chr1:21903970 synonymous SNV . 0 19 hm6Am_associated_SNPs_4274 0 0 0 0 1 ALPL chr1:21903876 3'AG 21903876 Downstream 95bp
1982 chr19 16793291 16793291 1 + G C KIRP 16793290 + 16793270 16793310 41 CTCCGAGGGGTCTGGAAGCCAGAGACCAACGAGATCCTGCA CTCCGAGGGGTCTGGAAGCCACAGACCAACGAGATCCTGCA < 41bp 0.427942910228845 0.701724343907324 NA NA prediction 0.403448687814648 Functional Gain - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16793290 chr19:16793291 nonsynonymous SNV 0.997 3 22 hm6Am_associated_SNPs_4280 0 0 0 0 2 TMEM38A chr19:16793232 3'AG 16793232 Downstream 60bp
1983 chr19 16793291 16793291 1 + G C KIRP 16793290 + 16793270 16793310 41 CTCCGAGGGGTCTGGAAGCCAGAGACCAACGAGATCCTGCA CTCCGAGGGGTCTGGAAGCCACAGACCAACGAGATCCTGCA < 41bp 0.427942910228845 0.701724343907324 NA NA prediction 0.403448687814648 Functional Gain - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16793290 chr19:16793291 nonsynonymous SNV 0.997 3 22 hm6Am_associated_SNPs_4280 0 0 0 0 2 TMEM38A chr19:16793319 5'GT 16793319 Upstream 29bp
1984 chr14 76965080 76965080 1 + G T LUSC 76965078 + 76965058 76965098 41 ACGGTGCGGAGGCCTGGGCCAGGGCTGACTCCCTTCAGGAG ACGGTGCGGAGGCCTGGGCCAGTGCTGACTCCCTTCAGGAG < 41bp 0.483774631671737 0.701629464397138 NA NA prediction 0.403258928794277 Functional Gain - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76965078 chr14:76965080 nonsynonymous SNV . 0 23 hm6Am_associated_SNPs_4285 0 0 1 0 1 ESRRB chr14:76965069 3'AG 76965069 Downstream 12bp
1985 chr1 205498724 205498724 1 + G A rs185731716 205498726 + 205498706 205498746 41 GGCGGGGCCCAGGGAGAGGCAGCCAAAGAGCCAGGTCCCTG GGCGGGGCCCAGGGAGAGACAGCCAAAGAGCCAGGTCCCTG < 41bp 0.625790924809511 0.827415886411624 NA NA prediction 0.403249923204226 Functional Gain - CDK18 ENSG00000117266 intronic Human protein_coding chr1:205498726 chr1:205498724 . . 0 19 hm6Am_associated_SNPs_4286 0 0 1 0 1 CDK18 chr1:205498649 3'AG 205498649 Downstream 76bp
1986 chr19 55021748 55021748 1 + G A LUSC 55021750 + 55021730 55021770 41 TCACAGGGACTGTGCCAGGCACTGAAGCCTCCGGATTTGAT TCACAGGGACTGTGCCAGACACTGAAGCCTCCGGATTTGAT < 41bp 0.635847296782737 0.837468813585848 NA NA prediction 0.403243033606223 Functional Gain - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55021750 chr19:55021748 nonsynonymous SNV 0.058 1 19 hm6Am_associated_SNPs_4287 0 0 0 0 1 LAIR2 chr19:55021736 3'AG 55021736 Downstream 13bp
1987 chr11 71712863 71712863 1 + G A BLCA 71712861 + 71712841 71712881 41 GGCAACCTTGCCCCCCACCCAAGAAGCCCTGCCCTCCAGCC GGCAACCTTGCCCCCCACCCAAAAAGCCCTGCCCTCCAGCC < 41bp 0.496125351016535 0.701614018400073 NA NA prediction 0.403228036800146 Functional Gain - IL18BP ENSG00000137496 CDS Human protein_coding chr11:71712861 chr11:71712863 nonsynonymous SNV 0.631 0 23 hm6Am_associated_SNPs_4288 0 0 1 0 1 IL18BP chr11:71712830 3'AG 71712830 Downstream 34bp
1988 chr16 23701251 23701251 1 + G A UCEC 23701253 + 23701233 23701273 41 ACGAGAAGCGGGACTTCCGCACATACCGCCTGAGTCTCCTG ACGAGAAGCGGGACTTCCACACATACCGCCTGAGTCTCCTG < 41bp 0.63186920224423 0.833412889861637 NA NA prediction 0.403087375234813 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23701253 chr16:23701251 nonsynonymous SNV 0.574 1 19 hm6Am_associated_SNPs_4294 0 0 1 0 1 PLK1 chr16:23701181 3'AG 23701181 Downstream 71bp
1989 chr11 47609632 47609632 1 + G T CESC 47609634 + 47609614 47609654 41 GGATGTCATGGGGCAGCTGCACATCCAGGATGAGGAACTAG GGATGTCATGGGGCAGCTTCACATCCAGGATGAGGAACTAG < 41bp 0.282804055486598 0.701536557343335 NA NA prediction 0.403073114686671 Functional Gain - FAM180B ENSG00000196666 CDS Human protein_coding chr11:47609634 chr11:47609632 synonymous SNV . 0 19 hm6Am_associated_SNPs_4295 0 0 0 0 1 FAM180B chr11:47609591 3'AG 47609591 Downstream 42bp
1990 chr4 48384683 48384683 1 + G T GBM 48384685 + 48384665 48384705 41 AGTGATCAGGAACTTGATGCACAAAGTTTAGATGATGAAGA AGTGATCAGGAACTTGATTCACAAAGTTTAGATGATGAAGA < 41bp 0.293356554197315 0.701510816876246 NA NA prediction 0.403021633752492 Functional Gain - SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48384685 chr4:48384683 nonsynonymous SNV 0.997 3 19 hm6Am_associated_SNPs_4299 0 0 1 0 1 SLAIN2 chr4:48384585 3'AG 48384585 Downstream 99bp
1991 chr10 88930307 88930307 1 + G C BLCA 88930306 + 88930286 88930326 41 CCTCAAAACATTCCTACCTCAGAGATCTTCCTCCGAGGCAG CCTCAAAACATTCCTACCTCACAGATCTTCCTCCGAGGCAG < 41bp 0.428596483610711 0.701484591163824 NA NA prediction 0.402969182327649 Functional Gain - FAM35A ENSG00000122376 CDS Human protein_coding chr10:88930306 chr10:88930307 nonsynonymous SNV 0.998 0 22 hm6Am_associated_SNPs_4300 0 0 0 0 1 FAM35A chr10:88930235 3'AG 88930235 Downstream 73bp
1992 chr2 26798866 26798866 1 + G A rs531808422 26798864 + 26798844 26798884 41 AGGACCACCGCAACAGAGCCATGGAGAAGAGCCACACTCCC AGGACCACCGCAACAGAGCCATAGAGAAGAGCCACACTCCC < 41bp 0.493314320092978 0.70145610430234 NA NA prediction 0.40291220860468 Functional Gain - C2orf70 ENSG00000173557 CDS Human protein_coding chr2:26798864 chr2:26798866 nonsynonymous SNV 0.306 0 23 hm6Am_associated_SNPs_4302 0 0 0 0 1 C2orf70 chr2:26798770 3'AG 26798770 Downstream 97bp
1993 chr5 139851858 139851858 1 + G A UCEC 139851860 + 139851840 139851880 41 TGAAGACTATTTTGGAGGGCATAGATCCGGCCAAGCATCAG TGAAGACTATTTTGGAGGACATAGATCCGGCCAAGCATCAG < 41bp 0.455737252770055 0.701435523582756 NA NA prediction 0.402871047165512 Functional Gain - ANKHD1 ENSG00000131503 CDS Human protein_coding chr5:139851860 chr5:139851858 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_4304 0 0 1 0 2 ANKHD1 chr5:139851824 3'AG 139851824 Downstream 35bp
1994 chr5 139851858 139851858 1 + G A UCEC 139851860 + 139851840 139851880 41 TGAAGACTATTTTGGAGGGCATAGATCCGGCCAAGCATCAG TGAAGACTATTTTGGAGGACATAGATCCGGCCAAGCATCAG < 41bp 0.455737252770055 0.701435523582756 NA NA prediction 0.402871047165512 Functional Gain - ANKHD1 ENSG00000131503 CDS Human protein_coding chr5:139851860 chr5:139851858 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_4304 0 0 1 0 2 ANKHD1 chr5:139851880 5'GT 139851880 Upstream 23bp
1995 chr1 11838859 11838859 1 + G T SARC 11838857 + 11838837 11838877 41 ACTGAGCAGCAGCACACTCCAAGACTCTCTGGAGAAGGTGA ACTGAGCAGCAGCACACTCCAATACTCTCTGGAGAAGGTGA < 41bp 0.54745407061311 0.748732982299638 NA NA prediction 0.402557823373057 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11838857 chr1:11838859 nonsynonymous SNV 0.000 1 23 hm6Am_associated_SNPs_4310 0 0 0 0 1 C1orf167 chr1:11838873 5'GT 11838873 Upstream 15bp
1996 chr15 42109650 42109650 1 + G A STAD 42109652 + 42109632 42109672 41 CATCTACTTCCGCACTGCGCAGAAGGTGAGGGCGCTGGGCT CATCTACTTCCGCACTGCACAGAAGGTGAGGGCGCTGGGCT < 41bp 0.503188273158184 0.704444969529293 NA NA prediction 0.402513392742219 Functional Gain - MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42109652 chr15:42109650 synonymous SNV . 0 19 hm6Am_associated_SNPs_4313 0 0 0 0 2 MAPKBP1 chr15:42109586 3'AG 42109586 Downstream 65bp
1997 chr15 42109650 42109650 1 + G A STAD 42109652 + 42109632 42109672 41 CATCTACTTCCGCACTGCGCAGAAGGTGAGGGCGCTGGGCT CATCTACTTCCGCACTGCACAGAAGGTGAGGGCGCTGGGCT < 41bp 0.503188273158184 0.704444969529293 NA NA prediction 0.402513392742219 Functional Gain - MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42109652 chr15:42109650 synonymous SNV . 0 19 hm6Am_associated_SNPs_4313 0 0 0 0 2 MAPKBP1 chr15:42109656 5'GT 42109656 Upstream 7bp
1998 chr20 61386152 61386152 1 + G T OV 61386154 + 61386134 61386174 41 CCGAGCAGGGCCAAGTGTGCACGGTCGGGGGCGAGCACAGC CCGAGCAGGGCCAAGTGTTCACGGTCGGGGGCGAGCACAGC < 41bp 0.277351955396242 0.701251248679251 NA NA prediction 0.402502497358502 Functional Gain - NTSR1 ENSG00000101188 CDS Human protein_coding chr20:61386154 chr20:61386152 nonsynonymous SNV 0.605 2 19 hm6Am_associated_SNPs_4315 0 0 0 0 1 NTSR1 chr20:61386238 5'GT 61386238 Upstream 87bp
1999 chr1 196946829 196946829 1 + G T UCEC 196946827 + 196946807 196946847 41 TTCAGTGTAATCCTAATCTCATGGGTATCCACTGTTGGGGG TTCAGTGTAATCCTAATCTCATTGGTATCCACTGTTGGGGG < 41bp 0.497074975148761 0.701194885227623 NA NA prediction 0.402389770455245 Functional Gain - CFHR5 ENSG00000134389 CDS Human protein_coding chr1:196946827 chr1:196946829 nonsynonymous SNV 0.243 3 23 hm6Am_associated_SNPs_4319 0 0 0 0 1 CFHR5 chr1:196946852 5'GT 196946852 Upstream 24bp
2000 chr19 18679273 18679273 1 + G T LUSC 18679271 + 18679251 18679291 41 ACCCCATCCCACCCAGCACCACGACCACCATTGCCACCTCA ACCCCATCCCACCCAGCACCACTACCACCATTGCCACCTCA < 41bp 0.502660658542518 0.703829837680754 NA NA prediction 0.402338358276471 Functional Gain - KXD1 ENSG00000105700 CDS Human protein_coding chr19:18679271 chr19:18679273 synonymous SNV . 0 23 hm6Am_associated_SNPs_4321 0 0 1 0 1 KXD1 chr19:18679212 3'AG 18679212 Downstream 62bp
2001 chr3 58156316 58156316 1 - C T COAD 58156314 - 58156294 58156334 41 GCCCATGGACCCCGATCAGCAGCATGTTGGAGCCTAGGAGG GCCCATGGACCCCGATCAACAGCATGTTGGAGCCTAGGAGG < 41bp 0.440233930020401 0.701168284922137 NA NA prediction 0.402336569844274 Functional Gain - FLNB ENSG00000136068 CDS Human antisense chr3:58156314 chr3:58156316 synonymous SNV . 0 19 hm6Am_associated_SNPs_4322 0 0 0 0 1 FLNB-AS1 chr3:58156224 5'GT 58156224 Upstream 93bp
2002 chr4 74719555 74719555 1 + G C CESC 74719554 + 74719534 74719574 41 GTGTGTGAAGACCACCTCCCAGGTCCGTCCCAGGCACATCA GTGTGTGAAGACCACCTCCCACGTCCGTCCCAGGCACATCA < 41bp 0.464333627780891 0.701165335817404 NA NA prediction 0.402330671634807 Functional Gain - PF4V1 ENSG00000109272 CDS Human protein_coding chr4:74719554 chr4:74719555 nonsynonymous SNV 0.001 2 22 hm6Am_associated_SNPs_4323 0 0 0 0 2 PF4V1 chr4:74719500 3'AG 74719500 Downstream 56bp
2003 chr4 74719555 74719555 1 + G C CESC 74719554 + 74719534 74719574 41 GTGTGTGAAGACCACCTCCCAGGTCCGTCCCAGGCACATCA GTGTGTGAAGACCACCTCCCACGTCCGTCCCAGGCACATCA < 41bp 0.464333627780891 0.701165335817404 NA NA prediction 0.402330671634807 Functional Gain - PF4V1 ENSG00000109272 CDS Human protein_coding chr4:74719554 chr4:74719555 nonsynonymous SNV 0.001 2 22 hm6Am_associated_SNPs_4323 0 0 0 0 2 PF4V1 chr4:74719626 5'GT 74719626 Upstream 72bp
2004 chr4 52938099 52938099 1 + G T LUSC 52938097 + 52938077 52938117 41 GTTCAGGCTTAAATCTCTTCAAGCTCAGGAGGATGCCCGCC GTTCAGGCTTAAATCTCTTCAATCTCAGGAGGATGCCCGCC < 41bp 0.488110040928614 0.701136552675479 NA NA prediction 0.402273105350957 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52938097 chr4:52938099 nonsynonymous SNV 0.163 0 23 hm6Am_associated_SNPs_4324 0 0 0 0 1 SPATA18 chr4:52938083 3'AG 52938083 Downstream 17bp
2005 chr19 39964107 39964107 1 + G A COAD 39964109 + 39964089 39964129 41 CCCTGCATGATGGCAGCCGCACTCCTGCCCAGAGTGGGGCC CCCTGCATGATGGCAGCCACACTCCTGCCCAGAGTGGGGCC < 41bp 0.438417630311359 0.701087689697722 NA NA prediction 0.402175379395444 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39964109 chr19:39964107 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_4329 0 0 1 0 1 SUPT5H chr19:39964056 3'AG 39964056 Downstream 52bp
2006 chr11 65647723 65647723 1 + G C SKCM 65647722 + 65647702 65647742 41 AGAGGCCTTCAAGTTGTTCCAGATCCAGTTCAACCGGAGTT AGAGGCCTTCAAGTTGTTCCACATCCAGTTCAACCGGAGTT < 41bp 0.44742297989468 0.701080452131828 NA NA prediction 0.402160904263657 Functional Gain - CTSW ENSG00000172543 CDS Human protein_coding chr11:65647722 chr11:65647723 nonsynonymous SNV 0.963 3 22 hm6Am_associated_SNPs_4330 0 0 0 0 2 CTSW chr11:65647673 3'AG 65647673 Downstream 51bp
2007 chr11 65647723 65647723 1 + G C SKCM 65647722 + 65647702 65647742 41 AGAGGCCTTCAAGTTGTTCCAGATCCAGTTCAACCGGAGTT AGAGGCCTTCAAGTTGTTCCACATCCAGTTCAACCGGAGTT < 41bp 0.44742297989468 0.701080452131828 NA NA prediction 0.402160904263657 Functional Gain - CTSW ENSG00000172543 CDS Human protein_coding chr11:65647722 chr11:65647723 nonsynonymous SNV 0.963 3 22 hm6Am_associated_SNPs_4330 0 0 0 0 2 CTSW chr11:65647757 5'GT 65647757 Upstream 35bp
2008 chr3 10960046 10960046 1 + G A GBM 10960048 + 10960028 10960068 41 TCTGTTGCCTGAACAGCGGCACCAGCTTCGTGGCTGGGTTT TCTGTTGCCTGAACAGCGACACCAGCTTCGTGGCTGGGTTT < 41bp 0.431661300477211 0.701080077917121 NA NA prediction 0.402160155834242 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10960048 chr3:10960046 nonsynonymous SNV 0.996 2 19 hm6Am_associated_SNPs_4331 0 0 1 0 2 SLC6A11 chr3:10960014 3'AG 10960014 Downstream 33bp
2009 chr3 10960046 10960046 1 + G A GBM 10960048 + 10960028 10960068 41 TCTGTTGCCTGAACAGCGGCACCAGCTTCGTGGCTGGGTTT TCTGTTGCCTGAACAGCGACACCAGCTTCGTGGCTGGGTTT < 41bp 0.431661300477211 0.701080077917121 NA NA prediction 0.402160155834242 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10960048 chr3:10960046 nonsynonymous SNV 0.996 2 19 hm6Am_associated_SNPs_4331 0 0 1 0 2 SLC6A11 chr3:10960138 5'GT 10960138 Upstream 93bp
2010 chr17 55752329 55752329 1 + G A SKCM 55752331 + 55752311 55752351 41 GGCGCGCCCGCTTCCCCGGCAGGCTCCAACCCGGCGCGGCC GGCGCGCCCGCTTCCCCGACAGGCTCCAACCCGGCGCGGCC < 41bp 0.627633710228439 0.828686096112726 NA NA prediction 0.402104771768575 Functional Gain - MSI2 ENSG00000153944 CDS Human protein_coding chr17:55752331 chr17:55752329 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_4332 0 0 1 0 1 MSI2 chr17:55752279 3'AG 55752279 Downstream 51bp
2011 chr19 5668193 5668193 1 + G T SARC 5668191 + 5668171 5668211 41 AGGCGCGGCAGCTTTGCCCCAGGCGGGGCCTCCCGGGGCCA AGGCGCGGCAGCTTTGCCCCAGTCGGGGCCTCCCGGGGCCA < 41bp 0.530530033725004 0.731514796451169 NA NA prediction 0.401969525452329 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5668191 chr19:5668193 nonsynonymous SNV 0.327 1 23 hm6Am_associated_SNPs_4335 0 0 1 0 1 SAFB chr19:5668173 3'AG 5668173 Downstream 21bp
2012 chr9 132636908 132636908 1 + G T UCEC 132636906 + 132636886 132636926 41 ACGAGGTGATGTACTCATTCAAGATCAACAGCCACGTCTCC ACGAGGTGATGTACTCATTCAATATCAACAGCCACGTCTCC < 41bp 0.504167374784338 0.705124032460904 NA NA prediction 0.401913315353133 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132636906 chr9:132636908 nonsynonymous SNV 0.979 2 23 hm6Am_associated_SNPs_4339 0 0 0 0 1 USP20 chr9:132636855 3'AG 132636855 Downstream 54bp
2013 chr3 140689777 140689777 1 + G C LUAD 140689779 + 140689759 140689799 41 GTTTGTTTAGGTTTTACTGCAATCACAGCAACCAACCCCAT GTTTGTTTAGGTTTTACTCCAATCACAGCAACCAACCCCAT < 41bp 0.598107771578957 0.799045079805982 NA NA prediction 0.401874616454052 Functional Gain - SLC25A36 ENSG00000114120 CDS Human protein_coding chr3:140689779 chr3:140689777 nonsynonymous SNV 0.999 4 19 hm6Am_associated_SNPs_4340 0 0 1 0 2 SLC25A36 chr3:140689769 3'AG 140689769 Downstream 9bp
2014 chr3 140689777 140689777 1 + G C LUAD 140689779 + 140689759 140689799 41 GTTTGTTTAGGTTTTACTGCAATCACAGCAACCAACCCCAT GTTTGTTTAGGTTTTACTCCAATCACAGCAACCAACCCCAT < 41bp 0.598107771578957 0.799045079805982 NA NA prediction 0.401874616454052 Functional Gain - SLC25A36 ENSG00000114120 CDS Human protein_coding chr3:140689779 chr3:140689777 nonsynonymous SNV 0.999 4 19 hm6Am_associated_SNPs_4340 0 0 1 0 2 SLC25A36 chr3:140689835 5'GT 140689835 Upstream 59bp
2015 chr11 88242044 88242044 1 + G A KIRP 88242046 + 88242026 88242066 41 CCGTGACTTCGATGGCCGGCAGAGGCTGGATTTCGGCAAAG CCGTGACTTCGATGGCCGACAGAGGCTGGATTTCGGCAAAG < 41bp 0.639766775954324 0.840691643336015 NA NA prediction 0.401849734763381 Functional Gain - GRM5 ENSG00000168959 CDS Human protein_coding chr11:88242046 chr11:88242044 nonsynonymous SNV 0.998 4 19 hm6Am_associated_SNPs_4341 0 0 0 0 1 GRM5 chr11:88242107 5'GT 88242107 Upstream 64bp
2016 chr3 184034521 184034521 1 + G C OV 184034520 + 184034500 184034540 41 GGGAGGATTCAGGTCTCTGCAGGTAATATCCCTTTCCCAAC GGGAGGATTCAGGTCTCTGCACGTAATATCCCTTTCCCAAC < 41bp 0.563465135338376 0.764384258180409 NA NA prediction 0.401838245684066 Functional Gain - EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184034520 chr3:184034521 nonsynonymous SNV 1.000 3 22 hm6Am_associated_SNPs_4342 0 0 1 0 2 EIF4G1 chr3:184034501 3'AG 184034501 Downstream 21bp
2017 chr3 184034521 184034521 1 + G C OV 184034520 + 184034500 184034540 41 GGGAGGATTCAGGTCTCTGCAGGTAATATCCCTTTCCCAAC GGGAGGATTCAGGTCTCTGCACGTAATATCCCTTTCCCAAC < 41bp 0.563465135338376 0.764384258180409 NA NA prediction 0.401838245684066 Functional Gain - EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184034520 chr3:184034521 nonsynonymous SNV 1.000 3 22 hm6Am_associated_SNPs_4342 0 0 1 0 2 EIF4G1 chr3:184034521 5'GT 184034521 Upstream 1bp
2018 chrX 17653713 17653713 1 + G T UCEC 17653711 + 17653691 17653731 41 CTCTGGCCTGCTGCATGCCCAAGAATGCAGGTATTTGGGGT CTCTGGCCTGCTGCATGCCCAATAATGCAGGTATTTGGGGT < 41bp 0.526574478106269 0.727475683968183 NA NA prediction 0.40180241172383 Functional Gain - NHS ENSG00000188158 CDS Human protein_coding chrX:17653711 chrX:17653713 nonsynonymous SNV 1.000 1 23 hm6Am_associated_SNPs_4344 0 0 0 0 1 NHS chrX:17653720 5'GT 17653720 Upstream 8bp
2019 chr6 54212279 54212279 1 + G C OV 54212281 + 54212261 54212301 41 ATGGATGCAATAGTGGAAGCATCGATAGGGCTTGGTGGTAC ATGGATGCAATAGTGGAACCATCGATAGGGCTTGGTGGTAC < 41bp 0.341914511066333 0.700868576907222 NA NA prediction 0.401737153814443 Functional Gain - TINAG ENSG00000137251 CDS Human protein_coding chr6:54212281 chr6:54212279 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_4346 0 0 0 0 1 TINAG chr6:54212315 5'GT 54212315 Upstream 37bp
2020 chr16 1032297 1032297 1 + G A rs146760359 1032299 + 1032279 1032319 41 GCTGGCCGACCAGTACCCGCACCTGCACAACGCCGAGCTCA GCTGGCCGACCAGTACCCACACCTGCACAACGCCGAGCTCA < 41bp 0.641234689294327 0.842081376477271 NA NA prediction 0.401693374365888 Functional Gain - SOX8 ENSG00000005513 CDS Human protein_coding chr16:1032299 chr16:1032297 synonymous SNV . 0 19 hm6Am_associated_SNPs_4348 0 0 0 0 1 SOX8 chr16:1032344 5'GT 1032344 Upstream 48bp
2021 chr13 51382042 51382042 1 + G A rs74078447 51382044 + 51382024 51382064 41 ACTGACCAGTGGGTCACGGCAATGAGACATTTACTGCTGAC ACTGACCAGTGGGTCACGACAATGAGACATTTACTGCTGAC < 41bp 0.612453204850421 0.813295796640989 NA NA prediction 0.401685183581137 Functional Gain - DLEU7-AS1 ENSG00000237152 ncRNA_exonic Human antisense chr13:51382044 chr13:51382042 . . 0 19 hm6Am_associated_SNPs_4349 0 0 0 0 1 DLEU7-AS1 chr13:51382122 5'GT 51382122 Upstream 81bp
2022 chr9 134105160 134105160 1 + G A rs529414786 134105162 + 134105142 134105182 41 GGAGAAAGTCCAATGAGAGCAGATCCCTTGGCCACCTTTGT GGAGAAAGTCCAATGAGAACAGATCCCTTGGCCACCTTTGT < 41bp 0.447417561023706 0.700807914208299 NA NA prediction 0.401615828416598 Functional Gain - NUP214 ENSG00000126883 CDS Human protein_coding chr9:134105162 chr9:134105160 unknown . 0 19 hm6Am_associated_SNPs_4351 0 0 1 0 1 NUP214 chr9:134105212 5'GT 134105212 Upstream 53bp
2023 chr19 14065217 14065217 1 + G T UCEC 14065215 + 14065195 14065235 41 CCCGGGTGTGCGTGTCCCTCAAGAACATTGTGGATGAGGAC CCCGGGTGTGCGTGTCCCTCAATAACATTGTGGATGAGGAC < 41bp 0.517857991111827 0.718654340501211 NA NA prediction 0.401592698778769 Functional Gain - DCAF15 ENSG00000132017 CDS Human protein_coding chr19:14065215 chr19:14065217 nonsynonymous SNV 0.997 3 23 hm6Am_associated_SNPs_4352 0 0 1 0 1 DCAF15 chr19:14065152 3'AG 14065152 Downstream 66bp
2024 chr4 41262761 41262761 1 + G T SARC 41262763 + 41262743 41262783 41 CCATTGGGAATTCCTGTGGCACAATCGGACTTATTCACGCA CCATTGGGAATTCCTGTGTCACAATCGGACTTATTCACGCA < 41bp 0.298107602685835 0.700784407913447 NA NA prediction 0.401568815826894 Functional Gain - UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41262763 chr4:41262761 nonsynonymous SNV 0.499 4 19 hm6Am_associated_SNPs_4353 0 0 1 0 2 UCHL1 chr4:41262664 3'AG 41262664 Downstream 98bp
2025 chr4 41262761 41262761 1 + G T SARC 41262763 + 41262743 41262783 41 CCATTGGGAATTCCTGTGGCACAATCGGACTTATTCACGCA CCATTGGGAATTCCTGTGTCACAATCGGACTTATTCACGCA < 41bp 0.298107602685835 0.700784407913447 NA NA prediction 0.401568815826894 Functional Gain - UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41262763 chr4:41262761 nonsynonymous SNV 0.499 4 19 hm6Am_associated_SNPs_4353 0 0 1 0 2 UCHL1 chr4:41262814 5'GT 41262814 Upstream 54bp
2026 chr9 35841166 35841166 1 + G A rs571753174 35841168 + 35841148 35841188 41 TCAGTACCTCCTTCAGCCGCAGCTGATTGTCCGGCGTTTGC TCAGTACCTCCTTCAGCCACAGCTGATTGTCCGGCGTTTGC < 41bp 0.555345310526559 0.756123383286562 NA NA prediction 0.401556145520007 Functional Gain - TMEM8B ENSG00000137103 UTR5 Human protein_coding chr9:35841168 chr9:35841166 . . 0 19 hm6Am_associated_SNPs_4354 0 0 1 0 1 TMEM8B chr9:35841264 5'GT 35841264 Upstream 99bp
2027 chr2 233271828 233271828 1 + G T UCEC 233271826 + 233271806 233271846 41 CCGAGGCCCTGGGTGCCGCCAAGAAGCTGCAGCCTGCACAG CCGAGGCCCTGGGTGCCGCCAATAAGCTGCAGCCTGCACAG < 41bp 0.494059633474233 0.700774633244878 NA NA prediction 0.401549266489757 Functional Gain - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233271826 chr2:233271828 nonsynonymous SNV 0.023 2 23 hm6Am_associated_SNPs_4355 0 0 0 0 2 ALPPL2 chr2:233271767 3'AG 233271767 Downstream 62bp
2028 chr2 233271828 233271828 1 + G T UCEC 233271826 + 233271806 233271846 41 CCGAGGCCCTGGGTGCCGCCAAGAAGCTGCAGCCTGCACAG CCGAGGCCCTGGGTGCCGCCAATAAGCTGCAGCCTGCACAG < 41bp 0.494059633474233 0.700774633244878 NA NA prediction 0.401549266489757 Functional Gain - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233271826 chr2:233271828 nonsynonymous SNV 0.023 2 23 hm6Am_associated_SNPs_4355 0 0 0 0 2 ALPPL2 chr2:233271883 5'GT 233271883 Upstream 56bp
2029 chr9 101589195 101589195 1 + G A UCEC 101589193 + 101589173 101589213 41 GGACTGTCACTGTGAGTGCCACGAAGGGTGGCTGGAGCCGC GGACTGTCACTGTGAGTGCCACAAAGGGTGGCTGGAGCCGC < 41bp 0.514532831531014 0.715286516545569 NA NA prediction 0.401507370029111 Functional Gain - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101589193 chr9:101589195 nonsynonymous SNV 1.000 2 23 hm6Am_associated_SNPs_4360 0 0 1 0 1 GALNT12 chr9:101589223 5'GT 101589223 Upstream 29bp
2030 chr4 25379142 25379142 1 + G T THYM 25379140 + 25379120 25379160 41 TTTTCCTGGTCTGGTCGCCCAAGCGGGATCTCATTGCTTTG TTTTCCTGGTCTGGTCGCCCAATCGGGATCTCATTGCTTTG < 41bp 0.501021889278305 0.701743208114505 NA NA prediction 0.401442637672399 Functional Gain - ANAPC4 ENSG00000053900 CDS Human protein_coding chr4:25379140 chr4:25379142 nonsynonymous SNV 1.000 4 23 hm6Am_associated_SNPs_4366 0 0 1 0 1 ANAPC4 chr4:25379178 5'GT 25379178 Upstream 37bp
2031 chr7 63720665 63720665 1 + G A rs538401113 63720663 + 63720643 63720683 41 GGAGTGGCAATGCCTGGATCACGCTCAGCAGAATTTATATA GGAGTGGCAATGCCTGGATCACACTCAGCAGAATTTATATA < 41bp 0.509801720915398 0.710518968899771 NA NA prediction 0.401434495968747 Functional Gain - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63720663 chr7:63720665 nonsynonymous SNV 0.003 2 23 hm6Am_associated_SNPs_4367 0 0 0 0 2 ZNF679 chr7:63720599 3'AG 63720599 Downstream 67bp
2032 chr7 63720665 63720665 1 + G A rs538401113 63720663 + 63720643 63720683 41 GGAGTGGCAATGCCTGGATCACGCTCAGCAGAATTTATATA GGAGTGGCAATGCCTGGATCACACTCAGCAGAATTTATATA < 41bp 0.509801720915398 0.710518968899771 NA NA prediction 0.401434495968747 Functional Gain - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63720663 chr7:63720665 nonsynonymous SNV 0.003 2 23 hm6Am_associated_SNPs_4367 0 0 0 0 2 ZNF679 chr7:63720725 5'GT 63720725 Upstream 61bp
2033 chr17 40936141 40936141 1 + G A UCEC 40936139 + 40936119 40936159 41 TCGGGGACCTGGGCCTGGCCACGCTCAAGCGCGCCTCCTTT TCGGGGACCTGGGCCTGGCCACACTCAAGCGCGCCTCCTTT < 41bp 0.521926945558122 0.72256335972598 NA NA prediction 0.401272828335717 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40936139 chr17:40936141 synonymous SNV . 0 23 hm6Am_associated_SNPs_4370 0 0 1 0 1 WNK4 chr17:40936175 5'GT 40936175 Upstream 35bp
2034 chr15 42129062 42129062 1 + G T UCEC 42129060 + 42129040 42129080 41 AGGCCCAGGCCCTTCGCTGCACGGTGCGGGCCGGTGAGATG AGGCCCAGGCCCTTCGCTGCACTGTGCGGGCCGGTGAGATG < 41bp 0.499739108685556 0.70063521936958 NA NA prediction 0.401270438739161 Functional Gain - JMJD7 ENSG00000168970;ENSG00000243789 CDS Human other chr15:42129060 chr15:42129062 synonymous SNV . 0 23 hm6Am_associated_SNPs_4371 0 0 0 0 1 JMJD7 chr15:42129138 5'GT 42129138 Upstream 77bp
2035 chr1 32687573 32687573 1 - C A LUAD 32687575 - 32687555 32687595 41 TGGCCGCTCTGTGGGGTGGCACGCAGCCGCTGCTGAAGCGG TGGCCGCTCTGTGGGGTGGCACTCAGCCGCTGCTGAAGCGG < 41bp 0.55161740607314 0.752242718377825 NA NA prediction 0.401250624609369 Functional Gain - TMEM234 ENSG00000160055 CDS Human protein_coding chr1:32687575 chr1:32687573 synonymous SNV . 0 23 hm6Am_associated_SNPs_4372 0 0 1 0 1 TMEM234 chr1:32687619 3'AG 32687619 Downstream 47bp
2036 chr1 206858801 206858801 1 + G A DLBC 206858803 + 206858783 206858823 41 TGGGGCTGGGCATCAACGGCAAAGTTTTGCAGATCTTCAAC TGGGGCTGGGCATCAACGACAAAGTTTTGCAGATCTTCAAC < 41bp 0.444252923303071 0.700603619727719 NA NA prediction 0.401207239455437 Functional Gain - MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206858803 chr1:206858801 nonsynonymous SNV 0.997 3 19 hm6Am_associated_SNPs_4376 0 0 1 0 1 MAPKAPK2 chr1:206858853 5'GT 206858853 Upstream 53bp
2037 chr16 50338315 50338315 1 + G T UCEC 50338313 + 50338293 50338333 41 GCCAACACCTCCCCAGGCCCAAGGGGGACGCGGCCCTGAAG GCCAACACCTCCCCAGGCCCAATGGGGACGCGGCCCTGAAG < 41bp 0.535522683331201 0.736106000179226 NA NA prediction 0.40116663369605 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50338313 chr16:50338315 nonsynonymous SNV 0.884 1 23 hm6Am_associated_SNPs_4377 0 0 1 0 1 ADCY7 chr16:50338271 3'AG 50338271 Downstream 45bp
2038 chr17 18647983 18647983 1 + G C LUSC 18647982 + 18647962 18648002 41 TTATACTCTCTTACTGCTGCAGATGTGCAACCCCAAATTAC TTATACTCTCTTACTGCTGCACATGTGCAACCCCAAATTAC < 41bp 0.587773208622924 0.788345805699416 NA NA prediction 0.401145194152984 Functional Gain - FBXW10 ENSG00000171931 CDS Human protein_coding chr17:18647982 chr17:18647983 nonsynonymous SNV 0.978 3 22 hm6Am_associated_SNPs_4378 0 0 0 0 1 FBXW10 chr17:18648062 5'GT 18648062 Upstream 80bp
2039 chr7 100470832 100470832 1 + G C LUSC 100470831 + 100470811 100470851 41 CTCCTCTGAGGGCGAGTGTCAGGGCTGCTACCCGCTGGATG CTCCTCTGAGGGCGAGTGTCACGGCTGCTACCCGCTGGATG < 41bp 0.445546821058997 0.700571623623498 NA NA prediction 0.401143247246996 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100470831 chr7:100470832 nonsynonymous SNV 0.999 2 22 hm6Am_associated_SNPs_4379 0 0 1 0 1 TRIP6 chr7:100470794 3'AG 100470794 Downstream 39bp
2040 chr15 25467386 25467386 1 + G A UCEC 25467388 + 25467368 25467408 41 AGGTGCTCAGCTCCCAGTGCACTGAAGCTCAGACCCTTCCT AGGTGCTCAGCTCCCAGTACACTGAAGCTCAGACCCTTCCT < 41bp 0.622444971778268 0.822981002527367 NA NA prediction 0.401072061498198 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25467388 chr15:25467386 . . 0 19 hm6Am_associated_SNPs_4381 0 0 0 3 1 SNHG14 chr15:25467306 3'AG 25467306 Downstream 81bp
2041 chr14 93676188 93676188 1 + G T CESC 93676190 + 93676170 93676210 41 GGCTCAGTAAAGAGACAAGCACTATATGCCTGTAGTACCTG GGCTCAGTAAAGAGACAATCACTATATGCCTGTAGTACCTG < 41bp 0.276882368123902 0.700479538113762 NA NA prediction 0.400959076227525 Functional Gain - UBR7 ENSG00000012963;ENSG00000259066 CDS Human other chr14:93676190 chr14:93676188 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_4386 0 0 1 0 1 UBR7 chr14:93676170 3'AG 93676170 Downstream 19bp
2042 chr11 6232186 6232186 1 + G T COAD 6232184 + 6232164 6232204 41 CAGCCCTCCACCAGGAGCCCAGGGTGGGGGCCCCAGGGACC CAGCCCTCCACCAGGAGCCCAGTGTGGGGGCCCCAGGGACC < 41bp 0.501319916447585 0.701787317680584 NA NA prediction 0.400934802465998 Functional Gain - C11orf42 ENSG00000180878 CDS Human protein_coding chr11:6232184 chr11:6232186 nonsynonymous SNV 0.998 3 23 hm6Am_associated_SNPs_4388 0 0 0 0 1 C11orf42 chr11:6232142 3'AG 6232142 Downstream 45bp
2043 chr2 233405389 233405389 1 + G T COAD 233405387 + 233405367 233405407 41 TGCTGAGGGTGCCGTCCACCATGGTGTGGCGGCCGGATATC TGCTGAGGGTGCCGTCCACCATTGTGTGGCGGCCGGATATC < 41bp 0.544685549961267 0.745144529337673 NA NA prediction 0.400917958752812 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233405387 chr2:233405389 nonsynonymous SNV 0.995 0 23 hm6Am_associated_SNPs_4389 0 0 0 0 2 CHRNG chr2:233405312 3'AG 233405312 Downstream 78bp
2044 chr2 233405389 233405389 1 + G T COAD 233405387 + 233405367 233405407 41 TGCTGAGGGTGCCGTCCACCATGGTGTGGCGGCCGGATATC TGCTGAGGGTGCCGTCCACCATTGTGTGGCGGCCGGATATC < 41bp 0.544685549961267 0.745144529337673 NA NA prediction 0.400917958752812 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233405387 chr2:233405389 nonsynonymous SNV 0.995 0 23 hm6Am_associated_SNPs_4389 0 0 0 0 2 CHRNG chr2:233405421 5'GT 233405421 Upstream 33bp
2045 chr19 41627401 41627401 1 + G C rs2287941 41627400 + 41627380 41627420 41 ACGTTTGTGCTGAGTCGCTCAGTGTCCAACATTATCTGTTC ACGTTTGTGCTGAGTCGCTCACTGTCCAACATTATCTGTTC < 41bp 0.449978312218647 0.700418504631842 NA NA prediction 0.400837009263683 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41627400 chr19:41627401 nonsynonymous SNV 0.798 1 22 hm6Am_associated_SNPs_4390 0 0 0 2 1 CYP2F1 chr19:41627363 3'AG 41627363 Downstream 39bp
2046 chr22 24581093 24581093 1 + G A rs377095412 24581091 + 24581071 24581111 41 GGCGCTCTGGACCAACGACCACGCACTGGCCTGGCACCTGA GGCGCTCTGGACCAACGACCACACACTGGCCTGGCACCTGA < 41bp 0.496981660677566 0.700417297746633 NA NA prediction 0.400834595493267 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24581091 chr22:24581093 nonsynonymous SNV 0.632 3 23 hm6Am_associated_SNPs_4391 0 0 0 0 1 SUSD2 chr22:24581062 3'AG 24581062 Downstream 32bp
2047 chr6 32825090 32825090 1 + G A rs17587 32825092 + 32825072 32825112 41 TGTCCCCGCTGCACGAGCGCATCTACTGTGCACTCTCTGGT TGTCCCCGCTGCACGAGCACATCTACTGTGCACTCTCTGGT < 41bp 0.469872163649209 0.700411041173544 NA NA prediction 0.400822082347088 Functional Gain - PSMB9 ENSG00000240065 CDS Human protein_coding chr6:32825092 chr6:32825090 nonsynonymous SNV 0.564 0 19 hm6Am_associated_SNPs_4392 0 0 0 0 2 PSMB9 chr6:32825040 3'AG 32825040 Downstream 51bp
2048 chr6 32825090 32825090 1 + G A rs17587 32825092 + 32825072 32825112 41 TGTCCCCGCTGCACGAGCGCATCTACTGTGCACTCTCTGGT TGTCCCCGCTGCACGAGCACATCTACTGTGCACTCTCTGGT < 41bp 0.469872163649209 0.700411041173544 NA NA prediction 0.400822082347088 Functional Gain - PSMB9 ENSG00000240065 CDS Human protein_coding chr6:32825092 chr6:32825090 nonsynonymous SNV 0.564 0 19 hm6Am_associated_SNPs_4392 0 0 0 0 2 PSMB9 chr6:32825171 5'GT 32825171 Upstream 82bp
2049 chr3 100455465 100455465 1 + G T UCEC 100455467 + 100455447 100455487 41 GTTCAGGAACACCCGACAGCATTGCTTCCTCCTCCTCAGCA GTTCAGGAACACCCGACATCATTGCTTCCTCCTCCTCAGCA < 41bp 0.275221206271914 0.700368184922064 NA NA prediction 0.400736369844129 Functional Gain - TFG ENSG00000114354 CDS Human protein_coding chr3:100455467 chr3:100455465 nonsynonymous SNV 0.999 3 19 hm6Am_associated_SNPs_4395 0 0 1 0 3 TFG chr3:100455420 3'AG 100455420 Downstream 46bp
2050 chr3 100455465 100455465 1 + G T UCEC 100455467 + 100455447 100455487 41 GTTCAGGAACACCCGACAGCATTGCTTCCTCCTCCTCAGCA GTTCAGGAACACCCGACATCATTGCTTCCTCCTCCTCAGCA < 41bp 0.275221206271914 0.700368184922064 NA NA prediction 0.400736369844129 Functional Gain - TFG ENSG00000114354 CDS Human protein_coding chr3:100455467 chr3:100455465 nonsynonymous SNV 0.999 3 19 hm6Am_associated_SNPs_4395 0 0 1 0 3 TFG chr3:100455548 5'GT 100455548 Upstream 84bp
2051 chr3 100455465 100455465 1 + G T UCEC 100455467 + 100455447 100455487 41 GTTCAGGAACACCCGACAGCATTGCTTCCTCCTCCTCAGCA GTTCAGGAACACCCGACATCATTGCTTCCTCCTCCTCAGCA < 41bp 0.275221206271914 0.700368184922064 NA NA prediction 0.400736369844129 Functional Gain - TFG ENSG00000114354 CDS Human protein_coding chr3:100455467 chr3:100455465 nonsynonymous SNV 0.999 3 19 hm6Am_associated_SNPs_4395 0 0 1 0 3 TFG chr3:100455560 5'GT 100455560 Upstream 96bp
2052 chr7 140389402 140389402 1 + G C BRCA 140389401 + 140389381 140389421 41 CCGTTGCATTTTCCAGGGCCAGAGAGTGGCTGAGCTGATCC CCGTTGCATTTTCCAGGGCCACAGAGTGGCTGAGCTGATCC < 41bp 0.441914776991049 0.700355593938501 NA NA prediction 0.400711187877002 Functional Gain - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140389401 chr7:140389402 nonsynonymous SNV 0.830 0 22 hm6Am_associated_SNPs_4397 0 0 0 0 1 ADCK2 chr7:140389397 3'AG 140389397 Downstream 6bp
2053 chr2 29225431 29225431 1 + G A SKCM 29225429 + 29225409 29225449 41 GGATCCAGGGGGAGGCCCCCAAGGAGTTCCCCTGCACAGCA GGATCCAGGGGGAGGCCCCCAAAGAGTTCCCCTGCACAGCA < 41bp 0.496846680777388 0.700288471416079 NA NA prediction 0.400576942832157 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29225429 chr2:29225431 nonsynonymous SNV 0.141 3 23 hm6Am_associated_SNPs_4398 0 0 0 0 1 TOGARAM2 chr2:29225402 3'AG 29225402 Downstream 30bp
2054 chr16 46943636 46943636 1 + G T LUSC 46943634 + 46943614 46943654 41 GTCTCCGGGGGCGGCAAGTCACGGACAGGTGTGATGATCCC GTCTCCGGGGGCGGCAAGTCACTGACAGGTGTGATGATCCC < 41bp 0.534594197911024 0.734869153511143 NA NA prediction 0.400549911200238 Functional Gain - GPT2 ENSG00000166123 CDS Human protein_coding chr16:46943634 chr16:46943636 nonsynonymous SNV 0.981 1 23 hm6Am_associated_SNPs_4400 0 0 1 0 1 GPT2 chr16:46943596 3'AG 46943596 Downstream 41bp
2055 chr5 78379499 78379499 1 + G C BLCA 78379498 + 78379478 78379518 41 GGGATATTCAAAAATACGCCAGAGAGGCCTACAACCTGGGG GGGATATTCAAAAATACGCCACAGAGGCCTACAACCTGGGG < 41bp 0.421978594202553 0.700260257905904 NA NA prediction 0.400520515811807 Functional Gain - BHMT2 ENSG00000132840 CDS Human protein_coding chr5:78379498 chr5:78379499 nonsynonymous SNV 0.986 4 22 hm6Am_associated_SNPs_4401 0 0 0 0 1 BHMT2 chr5:78379451 3'AG 78379451 Downstream 49bp
2056 chr13 41720616 41720616 1 + G C rs560554822 41720615 + 41720595 41720635 41 AGACCATCATTCTTCTACTCAGTTGCATTTGAAGCTTTGTC AGACCATCATTCTTCTACTCACTTGCATTTGAAGCTTTGTC < 41bp 0.542381917482272 0.742638211657082 NA NA prediction 0.400512588349619 Functional Gain - LOC101929140 ENSG00000165572;ENSG00000215482 intergenic Human other chr13:41720615 chr13:41720616 . . 0 22 hm6Am_associated_SNPs_4402 0 0 0 0 2 LOC101929140 chr13:41720563 3'AG 41720563 Downstream 54bp
2057 chr13 41720616 41720616 1 + G C rs560554822 41720615 + 41720595 41720635 41 AGACCATCATTCTTCTACTCAGTTGCATTTGAAGCTTTGTC AGACCATCATTCTTCTACTCACTTGCATTTGAAGCTTTGTC < 41bp 0.542381917482272 0.742638211657082 NA NA prediction 0.400512588349619 Functional Gain - LOC101929140 ENSG00000165572;ENSG00000215482 intergenic Human other chr13:41720615 chr13:41720616 . . 0 22 hm6Am_associated_SNPs_4402 0 0 0 0 2 LOC101929140 chr13:41720643 5'GT 41720643 Upstream 28bp
2058 chr19 59084181 59084181 1 + G C rs1867727 59084180 + 59084160 59084200 41 CAGGCGGCAACTTCCGCTCCAGGGTGCCAAGGTAGGTCCAG CAGGCGGCAACTTCCGCTCCACGGTGCCAAGGTAGGTCCAG < 41bp 0.583038670788836 0.783284082488151 NA NA prediction 0.40049082339863 Functional Gain - MZF1-AS1 ENSG00000267858 ncRNA_exonic Human antisense chr19:59084180 chr19:59084181 . . 0 22 hm6Am_associated_SNPs_4404 0 0 0 0 1 MZF1-AS1 chr19:59084190 5'GT 59084190 Upstream 10bp
2059 chr20 31196187 31196187 1 + G A CESC 31196189 + 31196169 31196209 41 TGGCGGACTCTCCTCACAGCACTGTGCTTCCCGGGGCCCAC TGGCGGACTCTCCTCACAACACTGTGCTTCCCGGGGCCCAC < 41bp 0.641219695102758 0.841384151604524 NA NA prediction 0.400328913003531 Functional Gain - LOC149950 ENSG00000204393 CDS Human lincRNA chr20:31196189 chr20:31196187 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_4414 0 0 0 0 1 LOC149950 chr20:31196112 3'AG 31196112 Downstream 76bp
2060 chr6 74072844 74072844 1 + G A COAD 74072842 + 74072822 74072862 41 GGGCGGAGAACGCATCCCGCACGTCCAGGGTATGTCCCAAA GGGCGGAGAACGCATCCCGCACATCCAGGGTATGTCCCAAA < 41bp 0.512991516716995 0.713142515729306 NA NA prediction 0.400301998024622 Functional Gain - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74072842 chr6:74072844 nonsynonymous SNV 0.002 1 23 hm6Am_associated_SNPs_4415 0 0 0 0 1 KHDC3L chr6:74072818 3'AG 74072818 Downstream 27bp
2061 chr1 25611072 25611072 1 + G T UCEC 25611070 + 25611050 25611090 41 TCCCCACCGAGCAGTTGGCCAAGATCTGACCGTGATGGCGG TCCCCACCGAGCAGTTGGCCAATATCTGACCGTGATGGCGG < 41bp 0.564510756624106 0.764656053207632 NA NA prediction 0.400290593167052 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25611070 chr1:25611072 nonsynonymous SNV 0.005 4 23 hm6Am_associated_SNPs_4416 0 0 1 0 1 RHD chr1:25611064 3'AG 25611064 Downstream 9bp
2062 chr17 76203047 76203047 1 + G T UCEC 76203045 + 76203025 76203065 41 CGATACTTGGAGCCTGGTCCACGTGCATCCCACCTTGGGAA CGATACTTGGAGCCTGGTCCACTTGCATCCCACCTTGGGAA < 41bp 0.510182378165272 0.710290587223619 NA NA prediction 0.400216418116694 Functional Gain - AFMID ENSG00000183077 CDS Human protein_coding chr17:76203045 chr17:76203047 synonymous SNV . 0 23 hm6Am_associated_SNPs_4418 0 0 1 0 1 AFMID chr17:76202992 3'AG 76202992 Downstream 56bp
2063 chr3 44607118 44607118 1 + G A SKCM 44607116 + 44607096 44607136 41 CTGGAGCCTCCTTATGACCCAGGGACACACCACCTCCCCAG CTGGAGCCTCCTTATGACCCAGAGACACACCACCTCCCCAG < 41bp 0.506184497691585 0.706256353126659 NA NA prediction 0.400143710870147 Functional Gain - ZKSCAN7 ENSG00000196345;ENSG00000273303 CDS Human other chr3:44607116 chr3:44607118 nonsynonymous SNV 0.007 0 23 hm6Am_associated_SNPs_4420 0 0 0 0 1 ZKSCAN7 chr3:44607147 5'GT 44607147 Upstream 30bp
2064 chr11 63974956 63974956 1 + G A UCEC 63974958 + 63974938 63974978 41 GCGGGTCACTGGGGAGTCGCACATCGGCGGGGTGCTCCTGA GCGGGTCACTGGGGAGTCACACATCGGCGGGGTGCTCCTGA < 41bp 0.428674563647293 0.700057137540732 NA NA prediction 0.400114275081465 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63974958 chr11:63974956 synonymous SNV . 0 19 hm6Am_associated_SNPs_4421 0 0 0 0 1 FERMT3 chr11:63974996 5'GT 63974996 Upstream 41bp
2065 chr19 36159524 36159524 1 + G A rs187217680 36159526 + 36159506 36159546 41 AGTTTTGGTGTGGGTGCCGCACTCTGCCGCCGCCGGTCCAT AGTTTTGGTGTGGGTGCCACACTCTGCCGCCGCCGGTCCAT < 41bp 0.429752643732662 0.700049065729622 NA NA prediction 0.400098131459245 Functional Gain - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36159526 chr19:36159524 nonsynonymous SNV 0.001 1 19 hm6Am_associated_SNPs_4422 0 0 0 0 1 UPK1A chr19:36159556 5'GT 36159556 Upstream 33bp
2066 chr16 30768964 30768964 1 - C T STAD 30768966 - 30768946 30768986 41 TGCCCCTGCAGGCCACATCCACGTCCTCCGAGCCTACATCA TGCCCCTGCAGGCCACATCCACATCCTCCGAGCCTACATCA < 41bp 0.500160879593561 0.700182395365117 NA NA prediction 0.400043031543112 Functional Gain - CCDC189 ENSG00000196118 CDS Human protein_coding chr16:30768966 chr16:30768964 nonsynonymous SNV 0.002 0 23 hm6Am_associated_SNPs_4424 1 0 0 0 1 CCDC189 chr16:30768975 3'AG 30768975 Downstream 12bp
2067 chr12 121434171 121434171 1 + G A LUSC 121434169 + 121434149 121434189 41 CCCTCCACCAAGTGTCCCCCACGGGCCTGGAGCCCAGCCAC CCCTCCACCAAGTGTCCCCCACAGGCCTGGAGCCCAGCCAC < 41bp 0.501181843883431 0.701193458472568 NA NA prediction 0.400023229178273 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121434169 chr12:121434171 synonymous SNV . 0 23 hm6Am_associated_SNPs_4425 0 0 1 0 1 HNF1A chr12:121434216 5'GT 121434216 Upstream 46bp
2068 chr1 19923518 19923518 1 + G A UCEC 19923518 + 19923498 19923538 41 GGGGGCCGGCCGAGAGGAAAGCTGGAGGCGCGGGTGGGGAA GGGGGCCGGCCGAGAGGAAAACTGGAGGCGCGGGTGGGGAA Direct Gain 0 0.997780515900635 NA NA prediction 0.995561031801269 Functional Gain - MINOS1;MINOS1-NBL1 ENSG00000173436;ENSG00000270136 UTR5 Human other chr1:19923518 chr1:19923518 . . 0 21 hm6Am_associated_SNPs_4439 0 0 1 0 1 MINOS1 chr1:19923603 5'GT 19923603 Upstream 86bp
2069 chr20 60962131 60962131 1 + G A rs76508598 60962131 + 60962111 60962151 41 GAGGCCCCTCCTTGCCCGCCGATATCTCTGCCGGGTGACTA GAGGCCCCTCCTTGCCCGCCAATATCTCTGCCGGGTGACTA Direct Gain 0 0.997422054950085 NA NA prediction 0.994844109900169 Functional Gain - RPS21 ENSG00000171858 upstream Human protein_coding chr20:60962131 chr20:60962131 . . 0 21 hm6Am_associated_SNPs_4451 0 0 1 0 1 RPS21 chr20:60962192 5'GT 60962192 Upstream 62bp
2070 chr17 27573875 27573875 1 + G A rs369560721 27573875 + 27573855 27573895 41 GGAGGGCCACAGAGCAAGTGGTACCAGATGGAGACCCAGGC GGAGGGCCACAGAGCAAGTGATACCAGATGGAGACCCAGGC Direct Gain 0 0.997126101012565 NA NA prediction 0.99425220202513 Functional Gain - CRYBA1 ENSG00000108255 upstream Human protein_coding chr17:27573875 chr17:27573875 . . 0 21 hm6Am_associated_SNPs_4458 0 0 0 0 1 CRYBA1 chr17:27573912 5'GT 27573912 Upstream 38bp
2071 chr5 118788243 118788243 1 + C A rs34353289 118788243 + 118788223 118788263 41 GTCCAGCGGCTCTGCTTGTTCGTGTGTGTGTCGTTGCAGGC GTCCAGCGGCTCTGCTTGTTAGTGTGTGTGTCGTTGCAGGC Direct Gain 0 0.996943741489332 NA NA prediction 0.993887482978664 Functional Gain - HSD17B4 ENSG00000133835 UTR5 Human protein_coding chr5:118788243 chr5:118788243 . . 0 21 hm6Am_associated_SNPs_4464 0 0 1 0 1 HSD17B4 chr5:118788328 5'GT 118788328 Upstream 86bp
2072 chr14 23776004 23776004 1 + C A rs189492896 23776004 + 23775984 23776024 41 GGGCCCTCCCTCTGCCCCCCCCTTTCTCCTCCCTCCTTCCT GGGCCCTCCCTCTGCCCCCCACTTTCTCCTCCCTCCTTCCT Direct Gain 0 0.99663972088228 NA NA prediction 0.99327944176456 Functional Gain - BCL2L2;BCL2L2-PABPN1 ENSG00000129473 UTR5 Human other chr14:23776004 chr14:23776004 . . 0 21 hm6Am_associated_SNPs_4469 0 0 1 0 1 BCL2L2;BCL2L2-PABPN1 chr14:23776103 5'GT 23776103 Upstream 100bp
2073 chr1 116184619 116184619 1 + G A rs116216703 116184619 + 116184599 116184639 41 GGCGGCGGCGGCGGGGCTCTGCCTCTCCAGGAGCCCAGCGC GGCGGCGGCGGCGGGGCTCTACCTCTCCAGGAGCCCAGCGC Direct Gain 0 0.996498400396299 NA NA prediction 0.992996800792597 Functional Gain - VANGL1 ENSG00000173218 UTR5 Human protein_coding chr1:116184619 chr1:116184619 . . 0 21 hm6Am_associated_SNPs_4473 0 0 1 0 1 VANGL1 chr1:116184707 5'GT 116184707 Upstream 89bp
2074 chr10 112327514 112327514 1 + C A STAD 112327514 + 112327494 112327534 41 GCGTAGGCGCCTCACCTGACCCTGCGGCCGTGCGGTTGCTG GCGTAGGCGCCTCACCTGACACTGCGGCCGTGCGGTTGCTG Direct Gain 0 0.995916730852299 NA NA prediction 0.991833461704599 Functional Gain - SMC3 ENSG00000108055 UTR5 Human protein_coding chr10:112327514 chr10:112327514 . . 0 21 hm6Am_associated_SNPs_4488 0 0 1 0 1 SMC3 chr10:112327589 5'GT 112327589 Upstream 76bp
2075 chr19 1269331 1269331 1 + C A rs147512234 1269331 + 1269311 1269351 41 GGGCTCGGGGACGCCCCCCCCTCACTCGCGCGTTAGGAGGC GGGCTCGGGGACGCCCCCCCATCACTCGCGCGTTAGGAGGC Direct Gain 0 0.995806952321428 NA NA prediction 0.991613904642857 Functional Gain - CIRBP-AS1 ENSG00000267493 ncRNA_intronic Human antisense chr19:1269331 chr19:1269331 . . 0 21 hm6Am_associated_SNPs_4498 0 0 1 0 1 CIRBP-AS1 chr19:1269409 5'GT 1269409 Upstream 79bp
2076 chr17 34136496 34136496 1 + T A rs182690536 34136496 + 34136476 34136516 41 CGCGCCGCCCTCAGTACAGCTCCGGCCGCCGCGCCGCCTGG CGCGCCGCCCTCAGTACAGCACCGGCCGCCGCGCCGCCTGG Direct Gain 0 0.995306375812954 NA NA prediction 0.990612751625908 Functional Gain - TAF15 ENSG00000172660 UTR5 Human other chr17:34136496 chr17:34136496 . . 0 21 hm6Am_associated_SNPs_4522 0 0 1 0 1 TAF15 chr17:34136580 5'GT 34136580 Upstream 85bp
2077 chr6 133135746 133135746 1 + G A rs192215865 133135746 + 133135726 133135766 41 CGAGTCGCGCGGAGGCGGAGGCTTGGGGTAAGTTGAGCGAG CGAGTCGCGCGGAGGCGGAGACTTGGGGTAAGTTGAGCGAG Direct Gain 0 0.995285564442001 NA NA prediction 0.990571128884002 Functional Gain - RPS12 ENSG00000112306 UTR5 Human protein_coding chr6:133135746 chr6:133135746 . . 0 21 hm6Am_associated_SNPs_4524 0 0 1 0 1 RPS12 chr6:133135752 5'GT 133135752 Upstream 7bp
2078 chr6 109169655 109169655 1 + G A rs191143068 109169655 + 109169635 109169675 41 CGGCGTCGTGGGGTTACCCCGCCCGCGCCAGCGCTGCATCC CGGCGTCGTGGGGTTACCCCACCCGCGCCAGCGCTGCATCC Direct Gain 0 0.995109992548666 NA NA prediction 0.990219985097332 Functional Gain - ARMC2 ENSG00000118690 UTR5 Human protein_coding chr6:109169655 chr6:109169655 . . 0 21 hm6Am_associated_SNPs_4534 0 0 1 0 1 ARMC2 chr6:109169749 5'GT 109169749 Upstream 95bp
2079 chr1 28157369 28157369 1 + G A UCEC 28157369 + 28157349 28157389 41 GGCGGCAGCCGCGAACTCCGGCTCTAGCCTCCCGCTGTTCG GGCGGCAGCCGCGAACTCCGACTCTAGCCTCCCGCTGTTCG Direct Gain 0 0.994816750710093 NA NA prediction 0.989633501420185 Functional Gain - PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28157369 chr1:28157369 nonsynonymous SNV 0.980 0 21 hm6Am_associated_SNPs_4545 0 0 1 0 1 PPP1R8 chr1:28157402 5'GT 28157402 Upstream 34bp
2080 chr9 140135774 140135774 1 + T A rs115244808 140135774 + 140135754 140135794 41 CGCTCTTCTGCTGCTGTTTGTCTACTTCCTCCTGCTTCCCC CGCTCTTCTGCTGCTGTTTGACTACTTCCTCCTGCTTCCCC Direct Gain 0 0.994755583223875 NA NA prediction 0.989511166447751 Functional Gain - TUBB4B ENSG00000188229 UTR5 Human protein_coding chr9:140135774 chr9:140135774 . . 0 21 hm6Am_associated_SNPs_4550 0 0 1 0 1 TUBB4B chr9:140135869 5'GT 140135869 Upstream 96bp
2081 chr9 140135778 140135778 1 + C A rs372315322 140135778 + 140135758 140135798 41 CTTCTGCTGCTGTTTGTCTACTTCCTCCTGCTTCCCCGCCG CTTCTGCTGCTGTTTGTCTAATTCCTCCTGCTTCCCCGCCG Direct Gain 0 0.994648149884135 NA NA prediction 0.98929629976827 Functional Gain - TUBB4B ENSG00000188229 UTR5 Human protein_coding chr9:140135778 chr9:140135778 . . 0 21 hm6Am_associated_SNPs_4553 0 0 1 0 1 TUBB4B chr9:140135869 5'GT 140135869 Upstream 92bp
2082 chr6 107077507 107077507 1 + C A rs72945092 107077507 + 107077487 107077527 41 TCACTAGCGACCGGTGACCTCTTTTTCCCCCTTGCCTGGCT TCACTAGCGACCGGTGACCTATTTTTCCCCCTTGCCTGGCT Direct Gain 0 0.994619135577415 NA NA prediction 0.98923827115483 Functional Gain - QRSL1 ENSG00000130348 UTR5 Human protein_coding chr6:107077507 chr6:107077507 . . 0 21 hm6Am_associated_SNPs_4555 0 0 1 0 1 QRSL1 chr6:107077580 5'GT 107077580 Upstream 74bp
2083 chr19 17970709 17970709 1 + G A rs368161491 17970709 + 17970689 17970729 41 TAGTGAAGGCCTGGTGAACGGCTGCGCGACAGAGGACACTT TAGTGAAGGCCTGGTGAACGACTGCGCGACAGAGGACACTT Direct Gain 0 0.994586874400578 NA NA prediction 0.989173748801156 Functional Gain - RPL18A ENSG00000105640 UTR5 Human protein_coding chr19:17970709 chr19:17970709 . . 0 21 hm6Am_associated_SNPs_4557 0 0 0 0 1 RPL18A chr19:17970783 5'GT 17970783 Upstream 75bp
2084 chr1 203830771 203830771 1 + C A rs148378993 203830771 + 203830751 203830791 41 AGGCAGCGTGCGGGTGTGCTCTTTGTGAAATTCCACCATGG AGGCAGCGTGCGGGTGTGCTATTTGTGAAATTCCACCATGG Direct Gain 0 0.99458288340251 NA NA prediction 0.98916576680502 Functional Gain - SNRPE ENSG00000182004 UTR5 Human protein_coding chr1:203830771 chr1:203830771 . . 0 21 hm6Am_associated_SNPs_4558 0 0 1 0 1 SNRPE chr1:203830841 5'GT 203830841 Upstream 71bp
2085 chr6 131456862 131456862 1 + G A rs112523434 131456862 + 131456842 131456882 41 GGACGCGGCCCGCCACCGCCGCTGCCGCCAGCCCAGACGCG GGACGCGGCCCGCCACCGCCACTGCCGCCAGCCCAGACGCG Direct Gain 0 0.994536602862439 NA NA prediction 0.989073205724878 Functional Gain - AKAP7 ENSG00000118507 UTR5 Human protein_coding chr6:131456862 chr6:131456862 . . 0 21 hm6Am_associated_SNPs_4560 0 0 0 0 1 AKAP7 chr6:131456922 5'GT 131456922 Upstream 61bp
2086 chr19 55249990 55249990 1 + C A GBM 55249990 + 55249970 55250010 41 GCTGAGCTGGGGCGCGGCCGCCTGTCTGCACAGACAGCACC GCTGAGCTGGGGCGCGGCCGACTGTCTGCACAGACAGCACC Direct Gain 0 0.994500904674027 NA NA prediction 0.989001809348054 Functional Gain - KIR2DL3 ENSG00000215765 ncRNA_intronic Human protein_coding chr19:55249990 chr19:55249990 . . 0 21 hm6Am_associated_SNPs_4563 0 0 0 0 1 KIR2DL3 chr19:55250044 5'GT 55250044 Upstream 55bp
2087 chr3 44666560 44666560 1 + C A rs114128513 44666560 + 44666540 44666580 41 CCTCGGCTGCCGGAAGGGCTCGTTCCTGTGTCATCTCCTAG CCTCGGCTGCCGGAAGGGCTAGTTCCTGTGTCATCTCCTAG Direct Gain 0 0.994486999268834 NA NA prediction 0.988973998537668 Functional Gain - ZNF197 ENSG00000236869 ncRNA_intronic Human antisense chr3:44666560 chr3:44666560 . . 0 21 hm6Am_associated_SNPs_4565 0 0 1 0 1 ZNF197 chr3:44666635 5'GT 44666635 Upstream 76bp
2088 chr6 96025450 96025450 1 + C A rs141477889 96025450 + 96025430 96025470 41 GGGCGCGGCGGCAGTCAGCTCTATGTTCGCGGTCTTAACCT GGGCGCGGCGGCAGTCAGCTATATGTTCGCGGTCTTAACCT Direct Gain 0 0.99435867959999 NA NA prediction 0.98871735919998 Functional Gain - MANEA ENSG00000172469 UTR5 Human protein_coding chr6:96025450 chr6:96025450 . . 0 21 hm6Am_associated_SNPs_4570 0 0 1 0 1 MANEA chr6:96025514 5'GT 96025514 Upstream 65bp
2089 chr10 93683765 93683765 1 + T A LUSC 93683765 + 93683745 93683785 41 GGGCCTGCGCCGCTCAGCTCTCTGGAAACTAGCGCCTCAGC GGGCCTGCGCCGCTCAGCTCACTGGAAACTAGCGCCTCAGC Direct Gain 0 0.994311922180087 NA NA prediction 0.988623844360175 Functional Gain - BTAF1 ENSG00000095564 UTR5 Human protein_coding chr10:93683765 chr10:93683765 . . 0 21 hm6Am_associated_SNPs_4573 0 0 1 0 1 BTAF1 chr10:93683847 5'GT 93683847 Upstream 83bp
2090 chr4 157997380 157997380 1 + G A rs560401835 157997380 + 157997360 157997400 41 CGGCGCCCGCTGCACCCTTAGCAGCCACTGCCACCTGGGCC CGGCGCCCGCTGCACCCTTAACAGCCACTGCCACCTGGGCC Direct Gain 0 0.994279382959675 NA NA prediction 0.98855876591935 Functional Gain - GLRB ENSG00000109738 UTR5 Human protein_coding chr4:157997380 chr4:157997380 . . 0 21 hm6Am_associated_SNPs_4575 0 0 1 0 1 GLRB chr4:157997449 5'GT 157997449 Upstream 70bp
2091 chr1 19923506 19923506 1 + G A rs374640616 19923506 + 19923486 19923526 41 GGGTCGGAGCGCGGGGGCCGGCCGAGAGGAAAGCTGGAGGC GGGTCGGAGCGCGGGGGCCGACCGAGAGGAAAGCTGGAGGC Direct Gain 0 0.994143926472406 NA NA prediction 0.988287852944812 Functional Gain - MINOS1;MINOS1-NBL1 ENSG00000173436;ENSG00000270136 UTR5 Human other chr1:19923506 chr1:19923506 . . 0 21 hm6Am_associated_SNPs_4587 0 0 1 0 1 MINOS1 chr1:19923603 5'GT 19923603 Upstream 98bp
2092 chr18 12308273 12308273 1 + G A rs11548177 12308273 + 12308253 12308293 41 GTCCGCAGAGCCAGTTCCTAGCGCAGAGCCGCGCCCGCCAT GTCCGCAGAGCCAGTTCCTAACGCAGAGCCGCGCCCGCCAT Direct Gain 0 0.99413532122003 NA NA prediction 0.988270642440061 Functional Gain - TUBB6 ENSG00000176014 UTR5 Human protein_coding chr18:12308273 chr18:12308273 . . 0 21 hm6Am_associated_SNPs_4588 0 0 1 0 1 TUBB6 chr18:12308348 5'GT 12308348 Upstream 76bp
2093 chr6 109169674 109169674 1 + C A rs556160478 109169674 + 109169654 109169694 41 CGCCCGCGCCAGCGCTGCATCCCTGGCCGCTACCCGGGGAG CGCCCGCGCCAGCGCTGCATACCTGGCCGCTACCCGGGGAG Direct Gain 0 0.994133232143025 NA NA prediction 0.98826646428605 Functional Gain - ARMC2 ENSG00000118690 UTR5 Human protein_coding chr6:109169674 chr6:109169674 . . 0 21 hm6Am_associated_SNPs_4589 0 0 1 0 1 ARMC2 chr6:109169749 5'GT 109169749 Upstream 76bp
2094 chr20 47662881 47662881 1 + G A rs117725610 47662881 + 47662861 47662901 41 TGCCGGGGTTTGAATGTGAGGCGGAGCGGCGGCAGGAGCGG TGCCGGGGTTTGAATGTGAGACGGAGCGGCGGCAGGAGCGG Direct Gain 0 0.994111527020395 NA NA prediction 0.988223054040789 Functional Gain - CSE1L ENSG00000124207 UTR5 Human protein_coding chr20:47662881 chr20:47662881 . . 0 21 hm6Am_associated_SNPs_4592 0 0 1 0 1 CSE1L chr20:47662960 5'GT 47662960 Upstream 80bp
2095 chr16 2255787 2255787 1 + C A rs574093429 2255787 + 2255767 2255807 41 GCGCCCGCGCGTGACTCCCCCCTGCCGGCTGCGGAGGTGGG GCGCCCGCGCGTGACTCCCCACTGCCGGCTGCGGAGGTGGG Direct Gain 0 0.99405199116668 NA NA prediction 0.988103982333359 Functional Gain - MLST8 ENSG00000167965 UTR5 Human protein_coding chr16:2255787 chr16:2255787 . . 0 21 hm6Am_associated_SNPs_4594 0 0 1 0 1 MLST8 chr16:2255876 5'GT 2255876 Upstream 90bp
2096 chr13 42846297 42846297 1 + G A rs556214124 42846297 + 42846277 42846317 41 GGGAGGGGGCCAGCTTGCTTGCCCGGCTCGCTCACGGGTCG GGGAGGGGGCCAGCTTGCTTACCCGGCTCGCTCACGGGTCG Direct Gain 0 0.994019110346762 NA NA prediction 0.988038220693524 Functional Gain - AKAP11 ENSG00000023516 UTR5 Human protein_coding chr13:42846297 chr13:42846297 . . 0 21 hm6Am_associated_SNPs_4597 0 0 1 0 1 AKAP11 chr13:42846364 5'GT 42846364 Upstream 68bp
2097 chr12 121837952 121837952 1 + T A HNSC 121837952 + 121837932 121837972 41 AGAGGGAAGGAGGTCGGCAGTGTGAGGAGCTGCTATGGTGC AGAGGGAAGGAGGTCGGCAGAGTGAGGAGCTGCTATGGTGC Direct Gain 0 0.993945629594827 NA NA prediction 0.987891259189654 Functional Gain - RNF34 ENSG00000170633 UTR5 Human protein_coding chr12:121837952 chr12:121837952 . . 0 21 hm6Am_associated_SNPs_4604 0 0 1 0 1 RNF34 chr12:121838021 5'GT 121838021 Upstream 70bp
2098 chr6 28193122 28193122 1 + C A rs73740592 28193122 + 28193102 28193142 41 CGGGCCGGTAACCCCCTCTCCCTCCTTGCGCGTTCCGGGTC CGGGCCGGTAACCCCCTCTCACTCCTTGCGCGTTCCGGGTC Direct Gain 0 0.993937212526906 NA NA prediction 0.987874425053811 Functional Gain - ZSCAN9 ENSG00000137185 UTR5 Human protein_coding chr6:28193122 chr6:28193122 . . 0 21 hm6Am_associated_SNPs_4605 0 0 1 0 1 ZSCAN9 chr6:28193144 5'GT 28193144 Upstream 23bp
2099 chr17 36909031 36909031 1 + G A rs11654978 36909031 + 36909011 36909051 41 CGCAGTGAAGGCTAGACCCGGTTTACTGGAATTGCTCTGGC CGCAGTGAAGGCTAGACCCGATTTACTGGAATTGCTCTGGC Direct Gain 0 0.993925749176091 NA NA prediction 0.987851498352182 Functional Gain - PSMB3 ENSG00000108294 UTR5 Human other chr17:36909031 chr17:36909031 . . 0 21 hm6Am_associated_SNPs_4606 0 0 1 0 1 PSMB3 chr17:36909082 5'GT 36909082 Upstream 52bp
2100 chr17 33307591 33307591 1 + G A rs9910720 33307591 + 33307571 33307611 41 TCGTGGGCTGCCCGCGGCCTGTAATGAGCAAGTTCCGAGGC TCGTGGGCTGCCCGCGGCCTATAATGAGCAAGTTCCGAGGC Direct Gain 0 0.993832144278164 NA NA prediction 0.987664288556328 Functional Gain - LIG3 ENSG00000005156 UTR5 Human protein_coding chr17:33307591 chr17:33307591 . . 0 21 hm6Am_associated_SNPs_4611 0 0 1 0 2 LIG3 chr17:33307616 5'GT 33307616 Upstream 26bp
2101 chr17 33307591 33307591 1 + G A rs9910720 33307591 + 33307571 33307611 41 TCGTGGGCTGCCCGCGGCCTGTAATGAGCAAGTTCCGAGGC TCGTGGGCTGCCCGCGGCCTATAATGAGCAAGTTCCGAGGC Direct Gain 0 0.993832144278164 NA NA prediction 0.987664288556328 Functional Gain - LIG3 ENSG00000005156 UTR5 Human protein_coding chr17:33307591 chr17:33307591 . . 0 21 hm6Am_associated_SNPs_4611 0 0 1 0 2 LIG3 chr17:33307641 5'GT 33307641 Upstream 51bp
2102 chr6 170615901 170615901 1 + C A rs17860763 170615901 + 170615881 170615921 41 GGCCTAGGGTGCAGCGGGCGCGTCTGCGGCTGGTGTTGGCG GGCCTAGGGTGCAGCGGGCGAGTCTGCGGCTGGTGTTGGCG Direct Gain 0 0.993769518754546 NA NA prediction 0.987539037509091 Functional Gain - FAM120B ENSG00000112584 UTR5 Human protein_coding chr6:170615901 chr6:170615901 . . 0 21 hm6Am_associated_SNPs_4616 0 0 1 0 1 FAM120B chr6:170615930 5'GT 170615930 Upstream 30bp
2103 chr4 38869377 38869377 1 + G A rs191102922 38869377 + 38869357 38869397 41 CTCCAGCCGCCCGCCCTCCGGCCGCGTCCCCGCCGGCCCTG CTCCAGCCGCCCGCCCTCCGACCGCGTCCCCGCCGGCCCTG Direct Gain 0 0.993707738121284 NA NA prediction 0.987415476242568 Functional Gain - FAM114A1 ENSG00000197712 UTR5 Human protein_coding chr4:38869377 chr4:38869377 . . 0 21 hm6Am_associated_SNPs_4621 0 0 0 0 1 FAM114A1 chr4:38869455 5'GT 38869455 Upstream 79bp
2104 chr10 29698528 29698528 1 + G A rs144962105 29698528 + 29698508 29698548 41 CCGGGCGGCCAGCTGGGCTCGGAGTGCAGCGGGGTTAGGAT CCGGGCGGCCAGCTGGGCTCAGAGTGCAGCGGGGTTAGGAT Direct Gain 0 0.993689002414044 NA NA prediction 0.987378004828088 Functional Gain - SVIL-AS1 ENSG00000224597 ncRNA_exonic Human antisense chr10:29698528 chr10:29698528 . . 0 21 hm6Am_associated_SNPs_4623 0 0 1 1 2 SVIL-AS1 chr10:29698587 5'GT 29698587 Upstream 60bp
2105 chr10 29698528 29698528 1 + G A rs144962105 29698528 + 29698508 29698548 41 CCGGGCGGCCAGCTGGGCTCGGAGTGCAGCGGGGTTAGGAT CCGGGCGGCCAGCTGGGCTCAGAGTGCAGCGGGGTTAGGAT Direct Gain 0 0.993689002414044 NA NA prediction 0.987378004828088 Functional Gain - SVIL-AS1 ENSG00000224597 ncRNA_exonic Human antisense chr10:29698528 chr10:29698528 . . 0 21 hm6Am_associated_SNPs_4623 0 0 1 1 2 SVIL-AS1 chr10:29698612 5'GT 29698612 Upstream 85bp
2106 chr17 38375646 38375646 1 + G A rs535395784 38375646 + 38375626 38375666 41 CGGCGGCGGCGGCGGCGGCGGCGGCGACGGCGAGAAAGAGC CGGCGGCGGCGGCGGCGGCGACGGCGACGGCGAGAAAGAGC Direct Gain 0 0.993666095199491 NA NA prediction 0.987332190398981 Functional Gain - WIPF2 ENSG00000171475 UTR5 Human protein_coding chr17:38375646 chr17:38375646 . . 0 21 hm6Am_associated_SNPs_4625 0 0 1 0 1 WIPF2 chr17:38375744 5'GT 38375744 Upstream 99bp
2107 chr2 3383538 3383538 1 + C A rs10176767 3383538 + 3383518 3383558 41 ACGCGCAGGCGTACAGAGCTCCCCGGGGGTGCCAGTTCCTC ACGCGCAGGCGTACAGAGCTACCCGGGGGTGCCAGTTCCTC Direct Gain 0 0.993612930071707 NA NA prediction 0.987225860143415 Functional Gain - TRAPPC12 ENSG00000171853 UTR5 Human protein_coding chr2:3383538 chr2:3383538 . . 0 21 hm6Am_associated_SNPs_4628 0 0 1 0 1 TRAPPC12 chr2:3383610 5'GT 3383610 Upstream 73bp
2108 chr16 30386128 30386128 1 + C A UCEC 30386128 + 30386108 30386148 41 GGACTGCCCCATGCTGACTCCTTGCTTCTTTCCAGCCGGAG GGACTGCCCCATGCTGACTCATTGCTTCTTTCCAGCCGGAG Direct Gain 0 0.993576639965687 NA NA prediction 0.987153279931373 Functional Gain - MYLPF ENSG00000180209 UTR5 Human protein_coding chr16:30386128 chr16:30386128 . . 0 21 hm6Am_associated_SNPs_4631 0 0 0 0 1 MYLPF chr16:30386181 5'GT 30386181 Upstream 54bp
2109 chr12 16500587 16500587 1 + C A rs560704275 16500587 + 16500567 16500607 41 CCGCGCGGCCACAGTCCCTGCATTGCGCGCGACCCGGCGGC CCGCGCGGCCACAGTCCCTGAATTGCGCGCGACCCGGCGGC Direct Gain 0 0.993551756933482 NA NA prediction 0.987103513866964 Functional Gain - MGST1 ENSG00000008394 UTR5 Human protein_coding chr12:16500587 chr12:16500587 . . 0 21 hm6Am_associated_SNPs_4633 0 0 1 0 1 MGST1 chr12:16500644 5'GT 16500644 Upstream 58bp
2110 chr16 2098024 2098024 1 + T A rs543752709 2098024 + 2098004 2098044 41 GGGCCAGGGGGGTGCGCCTTTCTCCGCGTCGGGGCGGCCCG GGGCCAGGGGGGTGCGCCTTACTCCGCGTCGGGGCGGCCCG Direct Gain 0 0.99349658367819 NA NA prediction 0.98699316735638 Functional Gain - TSC2 ENSG00000103197 UTR5 Human protein_coding chr16:2098024 chr16:2098024 . . 0 21 hm6Am_associated_SNPs_4639 0 0 1 0 1 TSC2 chr16:2098066 5'GT 2098066 Upstream 43bp
2111 chr3 43732440 43732440 1 + T A rs375436268 43732440 + 43732420 43732460 41 GGGGCGGCCCAGTCGGCCTGTCAGCCGGCTTCGAGATAAGT GGGGCGGCCCAGTCGGCCTGACAGCCGGCTTCGAGATAAGT Direct Gain 0 0.993338792264622 NA NA prediction 0.986677584529243 Functional Gain - ABHD5 ENSG00000011198 UTR5 Human protein_coding chr3:43732440 chr3:43732440 . . 0 21 hm6Am_associated_SNPs_4645 0 0 1 0 1 ABHD5 chr3:43732531 5'GT 43732531 Upstream 92bp
2112 chr15 74833635 74833635 1 + T A rs191636053 74833635 + 74833615 74833655 41 CCGGGGCCTGAGCTGCCGCCTCCTCCGCCGCCCGAAAACCC CCGGGGCCTGAGCTGCCGCCACCTCCGCCGCCCGAAAACCC Direct Gain 0 0.993314182319473 NA NA prediction 0.986628364638946 Functional Gain - ARID3B ENSG00000179361 UTR5 Human protein_coding chr15:74833635 chr15:74833635 . . 0 21 hm6Am_associated_SNPs_4648 0 0 1 0 1 ARID3B chr15:74833671 5'GT 74833671 Upstream 37bp
2113 chr4 6642336 6642336 1 + C A rs141648061 6642336 + 6642316 6642356 41 GCGCGCCCGCAGCTCGCCCCCCTGACCGTAAAGAGGCCCGG GCGCGCCCGCAGCTCGCCCCACTGACCGTAAAGAGGCCCGG Direct Gain 0 0.993270874325432 NA NA prediction 0.986541748650865 Functional Gain - MRFAP1 ENSG00000179010 UTR5 Human protein_coding chr4:6642336 chr4:6642336 . . 0 21 hm6Am_associated_SNPs_4650 0 0 0 0 1 MRFAP1 chr4:6642435 5'GT 6642435 Upstream 100bp
2114 chr2 228190044 228190044 1 + C A rs145568471 228190044 + 228190024 228190064 41 GCCGGTGCTGTCCCTGGGCGCCTCCGTGCTCTCAGCCAACC GCCGGTGCTGTCCCTGGGCGACTCCGTGCTCTCAGCCAACC Direct Gain 0 0.993067984200534 NA NA prediction 0.986135968401069 Functional Gain - MFF ENSG00000168958 UTR5 Human protein_coding chr2:228190044 chr2:228190044 . . 0 21 hm6Am_associated_SNPs_4672 0 0 1 0 1 MFF chr2:228190143 5'GT 228190143 Upstream 100bp
2115 chr12 53342680 53342680 1 + G A rs115941399 53342680 + 53342660 53342700 41 CTCGAGGGCCAACAACACCTGCTGTCCGTGTCCATGCCCGG CTCGAGGGCCAACAACACCTACTGTCCGTGTCCATGCCCGG Direct Gain 0 0.992983929209138 NA NA prediction 0.985967858418276 Functional Gain - KRT18 ENSG00000111057 UTR5 Human protein_coding chr12:53342680 chr12:53342680 . . 0 21 hm6Am_associated_SNPs_4681 0 0 0 0 1 KRT18 chr12:53342722 5'GT 53342722 Upstream 43bp
2116 chr2 85811548 85811548 1 + G A rs543624426 85811548 + 85811528 85811568 41 CCTGCTCTTCCTCCGGGGCCGCTGGCACTGCGGCCGCTCCG CCTGCTCTTCCTCCGGGGCCACTGGCACTGCGGCCGCTCCG Direct Gain 0 0.992966211759775 NA NA prediction 0.98593242351955 Functional Gain - VAMP5 ENSG00000168899 UTR5 Human protein_coding chr2:85811548 chr2:85811548 . . 0 21 hm6Am_associated_SNPs_4684 0 0 0 0 1 VAMP5 chr2:85811616 5'GT 85811616 Upstream 69bp
2117 chr11 32605400 32605400 1 + C A rs113415019 32605400 + 32605380 32605420 41 TTCCGGTCGGCGTGGTCTTGCGAGTGGAGTGTCCGCTGTGC TTCCGGTCGGCGTGGTCTTGAGAGTGGAGTGTCCGCTGTGC Direct Gain 0 0.99269690288666 NA NA prediction 0.98539380577332 Functional Gain - EIF3M ENSG00000149100 UTR5 Human protein_coding chr11:32605400 chr11:32605400 . . 0 21 hm6Am_associated_SNPs_4699 0 0 1 0 1 EIF3M chr11:32605475 5'GT 32605475 Upstream 76bp
2118 chr19 30156412 30156412 1 + G A rs373563812 30156412 + 30156392 30156432 41 GGCGCGGGGCCGGCGCAGAAGGTGAGTCCCCCCACCGTCCC GGCGCGGGGCCGGCGCAGAAAGTGAGTCCCCCCACCGTCCC Direct Gain 0 0.992676522039563 NA NA prediction 0.985353044079126 Functional Gain - PLEKHF1 ENSG00000166289 UTR5 Human protein_coding chr19:30156412 chr19:30156412 . . 0 21 hm6Am_associated_SNPs_4700 0 0 1 0 1 PLEKHF1 chr19:30156412 5'GT 30156412 Upstream 1bp
2119 chr15 100106220 100106220 1 + G A rs575258085 100106220 + 100106200 100106240 41 GATGTCCCGGCGAGTCCCGGGCTGAAAGAGGCGGCTCCGGG GATGTCCCGGCGAGTCCCGGACTGAAAGAGGCGGCTCCGGG Direct Gain 0 0.992667068215491 NA NA prediction 0.985334136430981 Functional Gain - MEF2A ENSG00000068305 UTR5 Human protein_coding chr15:100106220 chr15:100106220 . . 0 21 hm6Am_associated_SNPs_4701 0 0 1 0 1 MEF2A chr15:100106309 5'GT 100106309 Upstream 90bp
2120 chr14 67827081 67827081 1 + G A rs548200699 67827081 + 67827061 67827101 41 GCGAAGCGCACGCTGAGGAGGATCGGCGGCCGGTGAGGGGG GCGAAGCGCACGCTGAGGAGAATCGGCGGCCGGTGAGGGGG Direct Gain 0 0.992630849902394 NA NA prediction 0.985261699804788 Functional Gain - EIF2S1 ENSG00000134001 UTR5 Human protein_coding chr14:67827081 chr14:67827081 . . 0 21 hm6Am_associated_SNPs_4706 0 0 1 0 1 EIF2S1 chr14:67827173 5'GT 67827173 Upstream 93bp
2121 chr11 126081700 126081700 1 + G A rs369602343 126081700 + 126081680 126081720 41 CCGGCCGGTAGCTGCAGCTGGAGCAGTGGCGTTTGGAGGAG CCGGCCGGTAGCTGCAGCTGAAGCAGTGGCGTTTGGAGGAG Direct Gain 0 0.992529797397775 NA NA prediction 0.98505959479555 Functional Gain - FAM118B ENSG00000197798 UTR5 Human protein_coding chr11:126081700 chr11:126081700 . . 0 21 hm6Am_associated_SNPs_4713 0 0 1 0 1 FAM118B chr11:126081725 5'GT 126081725 Upstream 26bp
2122 chr2 175260484 175260484 1 + G A GBM 175260484 + 175260464 175260504 41 GGTGACAGCTTCCGGCAACTGATGCCTCCACTGGCCACTCC GGTGACAGCTTCCGGCAACTAATGCCTCCACTGGCCACTCC Direct Gain 0 0.992340127189781 NA NA prediction 0.984680254379563 Functional Gain - SCRN3 ENSG00000144306 UTR5 Human protein_coding chr2:175260484 chr2:175260484 . . 0 21 hm6Am_associated_SNPs_4734 0 0 1 0 1 SCRN3 chr2:175260545 5'GT 175260545 Upstream 62bp
2123 chr1 161087908 161087908 1 + C A rs537093405 161087908 + 161087888 161087928 41 ACCGCCCACTCGCTGCGGCGCTTCTGGCTCCAGACCGCCCT ACCGCCCACTCGCTGCGGCGATTCTGGCTCCAGACCGCCCT Direct Gain 0 0.992339039808705 NA NA prediction 0.984678079617409 Functional Gain - NIT1 ENSG00000158793 UTR5 Human protein_coding chr1:161087908 chr1:161087908 . . 0 21 hm6Am_associated_SNPs_4736 0 0 1 0 1 NIT1 chr1:161087968 5'GT 161087968 Upstream 61bp
2124 chr10 85899259 85899259 1 + T A rs3829861 85899259 + 85899239 85899279 41 TACGTCCTTTCGATGTTGCGTCATGCAGTGCGCCGGAGGAA TACGTCCTTTCGATGTTGCGACATGCAGTGCGCCGGAGGAA Direct Gain 0 0.992262671772571 NA NA prediction 0.984525343545142 Functional Gain - GHITM ENSG00000271933 ncRNA_exonic Human antisense chr10:85899259 chr10:85899259 . . 0 21 hm6Am_associated_SNPs_4741 0 0 0 0 1 GHITM chr10:85899349 5'GT 85899349 Upstream 91bp
2125 chr8 42948694 42948694 1 + G A rs545946973 42948694 + 42948674 42948714 41 GGGTGGCAGGAGCCGCAGAGGCTTGGGCTGCAGGTAGGTGC GGGTGGCAGGAGCCGCAGAGACTTGGGCTGCAGGTAGGTGC Direct Gain 0 0.992234113587181 NA NA prediction 0.984468227174362 Functional Gain - POMK ENSG00000185900 UTR5 Human protein_coding chr8:42948694 chr8:42948694 . . 0 21 hm6Am_associated_SNPs_4744 0 0 1 0 1 POMK chr8:42948706 5'GT 42948706 Upstream 13bp
2126 chr2 105954067 105954067 1 + G A BLCA 105954067 + 105954047 105954087 41 GGCGGGGGATGTGGGCGGTCGCAGCTGCACGGACTCGGAAC GGCGGGGGATGTGGGCGGTCACAGCTGCACGGACTCGGAAC Direct Gain 0 0.992024765591702 NA NA prediction 0.984049531183403 Functional Gain - C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105954067 chr2:105954067 nonsynonymous SNV 1.000 1 21 hm6Am_associated_SNPs_4760 0 0 1 0 1 C2orf49 chr2:105954143 5'GT 105954143 Upstream 77bp
2127 chr9 114287489 114287489 1 + G A rs537773178 114287489 + 114287469 114287509 41 GCGCACTCGCTGCGGGACAAGCTTCTGGAAGCTCTTTGCGG GCGCACTCGCTGCGGGACAAACTTCTGGAAGCTCTTTGCGG Direct Gain 0 0.99189397952365 NA NA prediction 0.983787959047301 Functional Gain - ZNF483 ENSG00000173258 UTR5 Human protein_coding chr9:114287489 chr9:114287489 . . 0 21 hm6Am_associated_SNPs_4770 0 0 0 0 1 ZNF483 chr9:114287542 5'GT 114287542 Upstream 54bp
2128 chr3 131100688 131100688 1 + G A rs543696274 131100688 + 131100668 131100708 41 TGGAGCTAGGCGAGGCCCTGGCGCTGGGGTCGGGCTGGCGT TGGAGCTAGGCGAGGCCCTGACGCTGGGGTCGGGCTGGCGT Direct Gain 0 0.991792367334202 NA NA prediction 0.983584734668403 Functional Gain - NUDT16 ENSG00000198585 CDS Human protein_coding chr3:131100688 chr3:131100688 nonsynonymous SNV 0.363 0 21 hm6Am_associated_SNPs_4779 0 0 1 0 1 NUDT16 chr3:131100786 5'GT 131100786 Upstream 99bp
2129 chr5 176873879 176873879 1 + C A rs111752154 176873879 + 176873859 176873899 41 CGGGCCGCCGCCGCCTCCCCCCGCAGGCCCGGGGCTCTGTC CGGGCCGCCGCCGCCTCCCCACGCAGGCCCGGGGCTCTGTC Direct Gain 0 0.991762856033015 NA NA prediction 0.98352571206603 Functional Gain - PRR7-AS1 ENSG00000246334 ncRNA_intronic Human antisense chr5:176873879 chr5:176873879 . . 0 21 hm6Am_associated_SNPs_4781 0 0 1 0 1 PRR7-AS1 chr5:176873961 5'GT 176873961 Upstream 83bp
2130 chr16 58035362 58035362 1 + G A rs201250414 58035362 + 58035342 58035382 41 TTGAGGTTGCTGGTGGACCTGCTCTGGTGGTCTTGGATGAG TTGAGGTTGCTGGTGGACCTACTCTGGTGGTCTTGGATGAG Direct Gain 0 0.99175449761768 NA NA prediction 0.98350899523536 Functional Gain - USB1 ENSG00000103005 UTR5 Human protein_coding chr16:58035362 chr16:58035362 . . 0 21 hm6Am_associated_SNPs_4783 0 0 1 0 1 USB1 chr16:58035437 5'GT 58035437 Upstream 76bp
2131 chr3 45430151 45430151 1 + G A rs28413188 45430151 + 45430131 45430171 41 GAACGAGGAGTAGAGGAGCCGCAGGCCAGAGCCTGTGAGCA GAACGAGGAGTAGAGGAGCCACAGGCCAGAGCCTGTGAGCA Direct Gain 0 0.99172081679829 NA NA prediction 0.98344163359658 Functional Gain - LARS2 ENSG00000011376 UTR5 Human protein_coding chr3:45430151 chr3:45430151 . . 0 21 hm6Am_associated_SNPs_4790 0 0 1 0 1 LARS2 chr3:45430172 5'GT 45430172 Upstream 22bp
2132 chr1 224544602 224544602 1 + G A rs559260881 224544602 + 224544582 224544622 41 TCCGAGCGGGTTTGACGGAAGGAGCGGCGGCGACGGAGGAG TCCGAGCGGGTTTGACGGAAAGAGCGGCGGCGACGGAGGAG Direct Gain 0 0.991623515108275 NA NA prediction 0.98324703021655 Functional Gain - CNIH4 ENSG00000143771 UTR5 Human protein_coding chr1:224544602 chr1:224544602 . . 0 21 hm6Am_associated_SNPs_4797 0 0 1 0 1 CNIH4 chr1:224544695 5'GT 224544695 Upstream 94bp
2133 chr13 38923992 38923992 1 + C A rs113889736 38923992 + 38923972 38924012 41 GAGCGGGGCGGTCCCCAGCACACTAGAGGAAGTCGTGCTAC GAGCGGGGCGGTCCCCAGCAAACTAGAGGAAGTCGTGCTAC Direct Gain 0 0.991577063193497 NA NA prediction 0.983154126386994 Functional Gain - UFM1 ENSG00000120686 UTR5 Human protein_coding chr13:38923992 chr13:38923992 . . 0 21 hm6Am_associated_SNPs_4804 0 0 0 0 1 UFM1 chr13:38924058 5'GT 38924058 Upstream 67bp
2134 chr19 38794830 38794830 1 + C A rs114727482 38794830 + 38794810 38794850 41 CCAACGGGCAGGTCTCAGCGCTCCTCCCCCTGCTCCGCTCC CCAACGGGCAGGTCTCAGCGATCCTCCCCCTGCTCCGCTCC Direct Gain 0 0.991519308605864 NA NA prediction 0.983038617211729 Functional Gain - C19orf33;YIF1B ENSG00000167644 UTR5 Human protein_coding chr19:38794830 chr19:38794830 . . 0 21 hm6Am_associated_SNPs_4811 0 0 0 0 1 C19orf33 chr19:38794923 5'GT 38794923 Upstream 94bp
2135 chr1 229762054 229762054 1 + T A rs71652397 229762054 + 229762034 229762074 41 GCTGCCGCCGTCCTCCCCTGTCTACCCGGAGCTGTCTCGAG GCTGCCGCCGTCCTCCCCTGACTACCCGGAGCTGTCTCGAG Direct Gain 0 0.991463771268738 NA NA prediction 0.982927542537475 Functional Gain - URB2 ENSG00000135763 UTR5 Human protein_coding chr1:229762054 chr1:229762054 . . 0 21 hm6Am_associated_SNPs_4814 0 0 1 0 1 URB2 chr1:229762103 5'GT 229762103 Upstream 50bp
2136 chr1 160313206 160313206 1 + G A MESO 160313206 + 160313186 160313226 41 GATGGCTACGGCAGGGGGTGGCTCTGGGGCTGACCCGGGAA GATGGCTACGGCAGGGGGTGACTCTGGGGCTGACCCGGGAA Direct Gain 0 0.99141155122113 NA NA prediction 0.982823102442259 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160313206 chr1:160313206 nonsynonymous SNV 0.991 1 21 hm6Am_associated_SNPs_4819 0 0 1 0 1 NCSTN chr1:160313271 5'GT 160313271 Upstream 66bp
2137 chr6 43445328 43445328 1 + G A rs541458011 43445328 + 43445308 43445348 41 ACTACCCGGCCTGCCCCGCGGCAAGATGGCGGCCTGAACGC ACTACCCGGCCTGCCCCGCGACAAGATGGCGGCCTGAACGC Direct Gain 0 0.991400798231568 NA NA prediction 0.982801596463136 Functional Gain - TJAP1 ENSG00000137221 UTR5 Human protein_coding chr6:43445328 chr6:43445328 . . 0 21 hm6Am_associated_SNPs_4820 0 0 1 0 1 TJAP1 chr6:43445366 5'GT 43445366 Upstream 39bp
2138 chr19 11649741 11649741 1 + G A rs138283881 11649741 + 11649721 11649761 41 CCGCCAGAGCCCACCGGCCAGCATGTCCTCTGCTCACTTCA CCGCCAGAGCCCACCGGCCAACATGTCCTCTGCTCACTTCA Direct Gain 0 0.991261111309544 NA NA prediction 0.982522222619088 Functional Gain - CNN1 ENSG00000130176 UTR5 Human protein_coding chr19:11649741 chr19:11649741 . . 0 21 hm6Am_associated_SNPs_4831 0 0 0 0 1 CNN1 chr19:11649805 5'GT 11649805 Upstream 65bp
2139 chr3 119298609 119298609 1 + C A rs138015439 119298609 + 119298589 119298629 41 TCCGCCCCAACCCGCGCCCTCGTCCACCCGCAGCAGCCAAG TCCGCCCCAACCCGCGCCCTAGTCCACCCGCAGCAGCCAAG Direct Gain 0 0.991085142242814 NA NA prediction 0.982170284485629 Functional Gain - ADPRH ENSG00000144843 UTR5 Human protein_coding chr3:119298609 chr3:119298609 . . 0 21 hm6Am_associated_SNPs_4852 0 0 0 0 1 ADPRH chr3:119298698 5'GT 119298698 Upstream 90bp
2140 chr11 64107712 64107712 1 + C A rs370532394 64107712 + 64107692 64107732 41 CAGGGCAGGTGCAGCTGCCACAGTGAGACGGGCACCCCGAC CAGGGCAGGTGCAGCTGCCAAAGTGAGACGGGCACCCCGAC Direct Gain 0 0.990997342462521 NA NA prediction 0.981994684925042 Functional Gain - CCDC88B ENSG00000168071 UTR5 Human protein_coding chr11:64107712 chr11:64107712 . . 0 21 hm6Am_associated_SNPs_4858 0 0 0 0 1 CCDC88B chr11:64107798 5'GT 64107798 Upstream 87bp
2141 chr5 118788244 118788244 1 + G A rs34604765 118788244 + 118788224 118788264 41 TCCAGCGGCTCTGCTTGTTCGTGTGTGTGTCGTTGCAGGCC TCCAGCGGCTCTGCTTGTTCATGTGTGTGTCGTTGCAGGCC Direct Gain 0 0.990959687152809 NA NA prediction 0.981919374305617 Functional Gain - HSD17B4 ENSG00000133835 UTR5 Human protein_coding chr5:118788244 chr5:118788244 . . 0 21 hm6Am_associated_SNPs_4864 0 0 1 0 1 HSD17B4 chr5:118788328 5'GT 118788328 Upstream 85bp
2142 chr9 19230781 19230781 1 + C A rs565911194 19230781 + 19230761 19230801 41 GCGAATCCGGTGCTTTCTTGCCCCAGGAAGAAGCCGTGTCG GCGAATCCGGTGCTTTCTTGACCCAGGAAGAAGCCGTGTCG Direct Gain 0 0.990916291364164 NA NA prediction 0.981832582728329 Functional Gain - DENND4C ENSG00000137145 UTR5 Human protein_coding chr9:19230781 chr9:19230781 . . 0 21 hm6Am_associated_SNPs_4869 0 0 1 0 1 DENND4C chr9:19230831 5'GT 19230831 Upstream 51bp
2143 chr20 35169894 35169894 1 + C A rs528936233 35169894 + 35169874 35169914 41 GCCGCCACGCCCCGCCCCCGCCTGGAGTCCAGACCCGACGG GCCGCCACGCCCCGCCCCCGACTGGAGTCCAGACCCGACGG Direct Gain 0 0.99089092600072 NA NA prediction 0.981781852001441 Functional Gain - DLGAP4-AS1 ENSG00000232907 ncRNA_intronic Human antisense chr20:35169894 chr20:35169894 . . 0 21 hm6Am_associated_SNPs_4872 0 0 0 0 1 DLGAP4-AS1 chr20:35169964 5'GT 35169964 Upstream 71bp
2144 chr16 81040431 81040431 1 - C T rs114304318 81040431 - 81040411 81040451 41 GTTTCGGCGTCTGGCAAGCGGTTCAGCTGTCTGCTCCCTAG GTTTCGGCGTCTGGCAAGCGATTCAGCTGTCTGCTCCCTAG Direct Gain 0 0.990847868617723 NA NA prediction 0.981695737235446 Functional Gain - CENPN;CMC2 ENSG00000103121;ENSG00000166451 UTR5 Human other chr16:81040431 chr16:81040431 . . 0 21 hm6Am_associated_SNPs_4878 0 0 1 0 1 CENPN;CMC2 chr16:81040339 5'GT 81040339 Upstream 93bp
2145 chr11 809955 809955 1 + C A rs182816891 809955 + 809935 809975 41 CGGTTTAACCCCGCCTCTTGCGTCGGCGCCTTCCTTTTCCT CGGTTTAACCCCGCCTCTTGAGTCGGCGCCTTCCTTTTCCT Direct Gain 0 0.990822269934645 NA NA prediction 0.981644539869291 Functional Gain - RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:809955 chr11:809955 . . 0 21 hm6Am_associated_SNPs_4881 0 0 1 0 1 RPLP2 chr11:810039 5'GT 810039 Upstream 85bp
2146 chr1 210406263 210406263 1 + G A rs370553152 210406263 + 210406243 210406283 41 GGGCGGCCGGGCCGGGACCCGCGAGTGTGCACCGGCGGCCG GGGCGGCCGGGCCGGGACCCACGAGTGTGCACCGGCGGCCG Direct Gain 0 0.990692930013571 NA NA prediction 0.981385860027143 Functional Gain - SERTAD4-AS1 ENSG00000203706 ncRNA_exonic Human antisense chr1:210406263 chr1:210406263 . . 0 21 hm6Am_associated_SNPs_4899 0 0 0 0 1 SERTAD4-AS1 chr1:210406356 5'GT 210406356 Upstream 94bp
2147 chr11 63706495 63706495 1 + G A SKCM 63706495 + 63706475 63706515 41 TCCGCTCTGCTGCCGCCGCTGTTGCAGCCACCGCCGTTGCC TCCGCTCTGCTGCCGCCGCTATTGCAGCCACCGCCGTTGCC Direct Gain 0 0.990621797237249 NA NA prediction 0.981243594474497 Functional Gain - NAA40 ENSG00000110583 UTR5 Human protein_coding chr11:63706495 chr11:63706495 . . 0 21 hm6Am_associated_SNPs_4910 0 0 1 0 1 NAA40 chr11:63706574 5'GT 63706574 Upstream 80bp
2148 chr7 43798292 43798292 1 + G A rs2302032 43798292 + 43798272 43798312 41 CCGCCCCGGTCCGCAAAGCCGGTGGCGCCCGGAGGCTGCAC CCGCCCCGGTCCGCAAAGCCAGTGGCGCCCGGAGGCTGCAC Direct Gain 0 0.990577022283225 NA NA prediction 0.981154044566449 Functional Gain - BLVRA ENSG00000106605 UTR5 Human protein_coding chr7:43798292 chr7:43798292 . . 0 21 hm6Am_associated_SNPs_4915 0 0 1 0 1 BLVRA chr7:43798333 5'GT 43798333 Upstream 42bp
2149 chr3 134204796 134204796 1 + G A rs74375630 134204796 + 134204776 134204816 41 GGCGCTGGAAACCCTTACCGGCACCCGGCCACCGCGGCAGA GGCGCTGGAAACCCTTACCGACACCCGGCCACCGCGGCAGA Direct Gain 0 0.990574567130008 NA NA prediction 0.981149134260016 Functional Gain - ANAPC13;CEP63 ENSG00000129055;ENSG00000182923 UTR5 Human protein_coding chr3:134204796 chr3:134204796 . . 0 21 hm6Am_associated_SNPs_4916 0 0 0 0 1 CEP63 chr3:134204894 5'GT 134204894 Upstream 99bp
2150 chr13 20532865 20532865 1 + T A rs528228893 20532865 + 20532845 20532885 41 GCGCCGCCGCCTCCTCCGCCTCCTCCTCCTCACCAGCGCTA GCGCCGCCGCCTCCTCCGCCACCTCCTCCTCACCAGCGCTA Direct Gain 0 0.990570372056952 NA NA prediction 0.981140744113904 Functional Gain - ZMYM2 ENSG00000121741 UTR5 Human protein_coding chr13:20532865 chr13:20532865 . . 0 21 hm6Am_associated_SNPs_4917 0 0 0 0 1 ZMYM2 chr13:20532911 5'GT 20532911 Upstream 47bp
2151 chr16 2255786 2255786 1 + C A rs554164754 2255786 + 2255766 2255806 41 GGCGCCCGCGCGTGACTCCCCCCTGCCGGCTGCGGAGGTGG GGCGCCCGCGCGTGACTCCCACCTGCCGGCTGCGGAGGTGG Direct Gain 0 0.990550747989157 NA NA prediction 0.981101495978314 Functional Gain - MLST8 ENSG00000167965 UTR5 Human protein_coding chr16:2255786 chr16:2255786 . . 0 21 hm6Am_associated_SNPs_4920 0 0 1 0 1 MLST8 chr16:2255876 5'GT 2255876 Upstream 91bp
2152 chr16 330678 330678 1 + G A rs368146102 330678 + 330658 330698 41 CGGCGCCCGGGCCGCGCGCCGCCATGCTGGGCCTGGACGCG CGGCGCCCGGGCCGCGCGCCACCATGCTGGGCCTGGACGCG Direct Gain 0 0.990538238222017 NA NA prediction 0.981076476444035 Functional Gain - ARHGDIG ENSG00000242173 UTR5 Human protein_coding chr16:330678 chr16:330678 . . 0 21 hm6Am_associated_SNPs_4923 0 0 1 0 1 ARHGDIG chr16:330753 5'GT 330753 Upstream 76bp
2153 chrX 102631491 102631491 1 + G A CESC 102631491 + 102631471 102631511 41 CGTCTGGCTACCAGCTCCCCGCTGCCCTGAGCTCGGCGGGC CGTCTGGCTACCAGCTCCCCACTGCCCTGAGCTCGGCGGGC Direct Gain 0 0.990379123242506 NA NA prediction 0.980758246485012 Functional Gain - BEX3 ENSG00000166681 UTR5 Human protein_coding chrX:102631491 chrX:102631491 . . 0 21 hm6Am_associated_SNPs_4935 0 0 1 0 1 BEX3 chrX:102631541 5'GT 102631541 Upstream 51bp
2154 chr12 4430415 4430415 1 + C A rs116446249 4430415 + 4430395 4430435 41 GCAGCGCGGCGCGGGGCCACCGACGGGACGCGGCTCCGGGA GCAGCGCGGCGCGGGGCCACAGACGGGACGCGGCTCCGGGA Direct Gain 0 0.990129110488131 NA NA prediction 0.980258220976263 Functional Gain - TIGAR ENSG00000078237 UTR5 Human protein_coding chr12:4430415 chr12:4430415 . . 0 21 hm6Am_associated_SNPs_4963 0 0 0 0 1 TIGAR chr12:4430469 5'GT 4430469 Upstream 55bp
2155 chr1 110230442 110230442 1 + C A rs142392008 110230442 + 110230422 110230462 41 CCCTCTCCGGAGCTCTTATACTCTGAGCCCTGCTCGGTTTA CCCTCTCCGGAGCTCTTATAATCTGAGCCCTGCTCGGTTTA Direct Gain 0 0.99008541324631 NA NA prediction 0.980170826492621 Functional Gain - GSTM1 ENSG00000134184 UTR5 Human protein_coding chr1:110230442 chr1:110230442 . . 0 21 hm6Am_associated_SNPs_4968 0 0 0 0 1 GSTM1 chr1:110230531 5'GT 110230531 Upstream 90bp
2156 chr2 233735030 233735030 1 + G A UCEC 233735030 + 233735010 233735050 41 CTCCGTGCGTCCCGCCCGCCGCTGCCCTCACTCCCGGCCAG CTCCGTGCGTCCCGCCCGCCACTGCCCTCACTCCCGGCCAG Direct Gain 0 0.990006443486944 NA NA prediction 0.980012886973888 Functional Gain - C2orf82 ENSG00000182600 UTR5 Human protein_coding chr2:233735030 chr2:233735030 . . 0 21 hm6Am_associated_SNPs_4978 0 0 1 0 1 C2orf82 chr2:233735124 5'GT 233735124 Upstream 95bp
2157 chr1 27114723 27114723 1 + C A rs144736422 27114723 + 27114703 27114743 41 CTGGTGGGGCTCTGCAGGCTCCCTCGGGAGTGGTCCTTGGG CTGGTGGGGCTCTGCAGGCTACCTCGGGAGTGGTCCTTGGG Direct Gain 0 0.990005738875161 NA NA prediction 0.980011477750322 Functional Gain - PIGV ENSG00000060642 UTR5 Human protein_coding chr1:27114723 chr1:27114723 . . 0 21 hm6Am_associated_SNPs_4979 0 0 1 0 1 PIGV chr1:27114759 5'GT 27114759 Upstream 37bp
2158 chr2 74782346 74782346 1 + C A UCEC 74782346 + 74782326 74782366 41 GGCGTAGCGCGGCTCGAGTTCTTTGACCATAAGGGGTCGAG GGCGTAGCGCGGCTCGAGTTATTTGACCATAAGGGGTCGAG Direct Gain 0 0.990004274140525 NA NA prediction 0.980008548281051 Functional Gain - DOK1 ENSG00000115325 CDS Human protein_coding chr2:74782346 chr2:74782346 nonsynonymous SNV 0.998 3 21 hm6Am_associated_SNPs_4980 0 0 0 0 1 DOK1;DOK1 chr2:74782281 3'AG 74782281 Downstream 66bp
2159 chr19 44529578 44529578 1 + G A rs533898692 44529578 + 44529558 44529598 41 GTCTCCTTTCCTTGGGGCTCGCAACCACCCAATGATCGATT GTCTCCTTTCCTTGGGGCTCACAACCACCCAATGATCGATT Direct Gain 0 0.990003228921598 NA NA prediction 0.980006457843196 Functional Gain - ZNF222 ENSG00000159885;ENSG00000267022 UTR5 Human other chr19:44529578 chr19:44529578 . . 0 21 hm6Am_associated_SNPs_4981 0 0 1 0 1 ZNF222 chr19:44529630 5'GT 44529630 Upstream 53bp
2160 chr2 233415402 233415402 1 + C A rs565190729 233415402 + 233415382 233415422 41 CCGGTGGAGCGGAAGTCACTCCCTGAGGCAGTGGCGACAGC CCGGTGGAGCGGAAGTCACTACCTGAGGCAGTGGCGACAGC Direct Gain 0 0.989955410522827 NA NA prediction 0.979910821045653 Functional Gain - EIF4E2 ENSG00000135930 UTR5 Human protein_coding chr2:233415402 chr2:233415402 . . 0 21 hm6Am_associated_SNPs_4990 0 0 1 0 1 EIF4E2 chr2:233415454 5'GT 233415454 Upstream 53bp
2161 chr17 8339264 8339264 1 + G A rs558228298 8339264 + 8339244 8339284 41 TGAGTGGAGCTCGGGGCTGCGTAGGGGAGCTGAGCCGAGCG TGAGTGGAGCTCGGGGCTGCATAGGGGAGCTGAGCCGAGCG Direct Gain 0 0.989949024059254 NA NA prediction 0.979898048118508 Functional Gain - NDEL1 ENSG00000166579 UTR5 Human protein_coding chr17:8339264 chr17:8339264 . . 0 21 hm6Am_associated_SNPs_4991 0 0 1 0 1 NDEL1 chr17:8339363 5'GT 8339363 Upstream 100bp
2162 chr3 160939120 160939120 1 + G A rs12490149 160939120 + 160939100 160939140 41 TCTGTGGCGGAGACAGCCAGGTTGGCAGCTGACGGGACAGC TCTGTGGCGGAGACAGCCAGATTGGCAGCTGACGGGACAGC Direct Gain 0 0.989929418704106 NA NA prediction 0.979858837408212 Functional Gain - NMD3 ENSG00000169251 splicing Human protein_coding chr3:160939120 chr3:160939120 . . 0 21 hm6Am_associated_SNPs_4993 0 0 1 0 1 NMD3 chr3:160939197 5'GT 160939197 Upstream 78bp
2163 chr4 128982504 128982504 1 + G A rs577101188 128982504 + 128982484 128982524 41 GCTCGCGCCTCCCCAACTCGGGTAAAGCTCCTCGGCCTCGG GCTCGCGCCTCCCCAACTCGAGTAAAGCTCCTCGGCCTCGG Direct Gain 0 0.989853213873466 NA NA prediction 0.979706427746932 Functional Gain - LARP1B ENSG00000138709 UTR5 Human protein_coding chr4:128982504 chr4:128982504 . . 0 21 hm6Am_associated_SNPs_5001 0 0 1 0 1 LARP1B chr4:128982556 5'GT 128982556 Upstream 53bp
2164 chr4 95373086 95373086 1 + G A rs28736374 95373086 + 95373066 95373106 41 GTGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTT GTGGGGACGGCGCCCTCACCACGAGTCACTTGTCAGCCCTT Direct Gain 0 0.98972136472722 NA NA prediction 0.97944272945444 Functional Gain - PDLIM5 ENSG00000163110 UTR5 Human protein_coding chr4:95373086 chr4:95373086 . . 0 21 hm6Am_associated_SNPs_5016 0 0 1 0 1 PDLIM5 chr4:95373146 5'GT 95373146 Upstream 61bp
2165 chr21 47706297 47706297 1 + C A rs2298699 47706297 + 47706277 47706317 41 TCCGGTCGGGAGGGTCCGCCCGCTCTCGCGTCCTTTGCTGG TCCGGTCGGGAGGGTCCGCCAGCTCTCGCGTCCTTTGCTGG Direct Gain 0 0.989680510240384 NA NA prediction 0.979361020480769 Functional Gain - YBEY ENSG00000182362 UTR5 Human protein_coding chr21:47706297 chr21:47706297 . . 0 21 hm6Am_associated_SNPs_5020 0 0 1 0 1 YBEY chr21:47706329 5'GT 47706329 Upstream 33bp
2166 chr2 27805946 27805946 1 + C A UCEC 27805946 + 27805926 27805966 41 GCGTTGGTCTGGCCGGAGCCCTTGGGTGAAATTGTTAGGCG GCGTTGGTCTGGCCGGAGCCATTGGGTGAAATTGTTAGGCG Direct Gain 0 0.989606971902037 NA NA prediction 0.979213943804074 Functional Gain - ZNF512 ENSG00000259080 ncRNA_exonic Human protein_coding chr2:27805946 chr2:27805946 . . 0 21 hm6Am_associated_SNPs_5031 0 0 1 0 2 ZNF512 chr2:27805995 5'GT 27805995 Upstream 50bp
2167 chr2 27805946 27805946 1 + C A UCEC 27805946 + 27805926 27805966 41 GCGTTGGTCTGGCCGGAGCCCTTGGGTGAAATTGTTAGGCG GCGTTGGTCTGGCCGGAGCCATTGGGTGAAATTGTTAGGCG Direct Gain 0 0.989606971902037 NA NA prediction 0.979213943804074 Functional Gain - ZNF512 ENSG00000259080 ncRNA_exonic Human protein_coding chr2:27805946 chr2:27805946 . . 0 21 hm6Am_associated_SNPs_5031 0 0 1 0 2 ZNF512 chr2:27806009 5'GT 27806009 Upstream 64bp
2168 chr3 43328116 43328116 1 + G A rs141210890 43328116 + 43328096 43328136 41 GGGGTTTCGGCGGCCGGGAGGGAGTTGTCGGCGCCGCGGCC GGGGTTTCGGCGGCCGGGAGAGAGTTGTCGGCGCCGCGGCC Direct Gain 0 0.989588898632417 NA NA prediction 0.979177797264834 Functional Gain - SNRK ENSG00000163788 UTR5 Human protein_coding chr3:43328116 chr3:43328116 . . 0 21 hm6Am_associated_SNPs_5032 0 0 1 0 1 SNRK chr3:43328167 5'GT 43328167 Upstream 52bp
2169 chr10 124913908 124913908 1 + C A rs73362744 124913908 + 124913888 124913928 41 CTTCCTCTCCGCCTCCTTCGCCTAGCCTGCGAGTGTTCTGA CTTCCTCTCCGCCTCCTTCGACTAGCCTGCGAGTGTTCTGA Direct Gain 0 0.989513209442868 NA NA prediction 0.979026418885736 Functional Gain - BUB3 ENSG00000154473 UTR5 Human protein_coding chr10:124913908 chr10:124913908 . . 0 21 hm6Am_associated_SNPs_5041 0 0 0 0 1 BUB3 chr10:124914001 5'GT 124914001 Upstream 94bp
2170 chr22 38349778 38349778 1 + G A CESC 38349778 + 38349758 38349798 41 GACCGGGGCGCAGCGGGGTCGCTGAGGCGAGGGTGTCATGT GACCGGGGCGCAGCGGGGTCACTGAGGCGAGGGTGTCATGT Direct Gain 0 0.989512337831596 NA NA prediction 0.979024675663192 Functional Gain - POLR2F ENSG00000100142 UTR5 Human protein_coding chr22:38349778 chr22:38349778 . . 0 21 hm6Am_associated_SNPs_5042 0 0 1 0 1 POLR2F chr22:38349814 5'GT 38349814 Upstream 37bp
2171 chr9 140135776 140135776 1 + T A rs368345353 140135776 + 140135756 140135796 41 CTCTTCTGCTGCTGTTTGTCTACTTCCTCCTGCTTCCCCGC CTCTTCTGCTGCTGTTTGTCAACTTCCTCCTGCTTCCCCGC Direct Gain 0 0.989462141645793 NA NA prediction 0.978924283291587 Functional Gain - TUBB4B ENSG00000188229 UTR5 Human protein_coding chr9:140135776 chr9:140135776 . . 0 21 hm6Am_associated_SNPs_5051 0 0 1 0 1 TUBB4B chr9:140135869 5'GT 140135869 Upstream 94bp
2172 chr20 61569541 61569541 1 + G A rs572780325 61569541 + 61569521 61569561 41 GCGGCCGCCACCTCTCCCCAGCCCAGGAGAGGCTGCGGAGC GCGGCCGCCACCTCTCCCCAACCCAGGAGAGGCTGCGGAGC Direct Gain 0 0.989227126935631 NA NA prediction 0.978454253871261 Functional Gain - GID8 ENSG00000101193 UTR5 Human protein_coding chr20:61569541 chr20:61569541 . . 0 21 hm6Am_associated_SNPs_5070 0 0 1 0 1 GID8 chr20:61569605 5'GT 61569605 Upstream 65bp
2173 chr16 3551034 3551034 1 + G A rs375774922 3551034 + 3551014 3551054 41 TGATCGCTGAGGGGCGAGCAGTTGCGACCCTGGGCTCCTGG TGATCGCTGAGGGGCGAGCAATTGCGACCCTGGGCTCCTGG Direct Gain 0 0.989211328994362 NA NA prediction 0.978422657988723 Functional Gain - CLUAP1 ENSG00000263212 ncRNA_intronic Human protein_coding chr16:3551034 chr16:3551034 . . 0 21 hm6Am_associated_SNPs_5074 0 0 1 0 1 CLUAP1 chr16:3551089 5'GT 3551089 Upstream 56bp
2174 chr9 134001064 134001064 1 + G A rs149597527 134001064 + 134001044 134001084 41 GGCCGTGGGAGGCAGCGTTGGCTGCTTCGACACACTGAGGG GGCCGTGGGAGGCAGCGTTGACTGCTTCGACACACTGAGGG Direct Gain 0 0.989058804603508 NA NA prediction 0.978117609207016 Functional Gain - NUP214 ENSG00000126883 UTR5 Human protein_coding chr9:134001064 chr9:134001064 . . 0 21 hm6Am_associated_SNPs_5090 0 0 1 0 1 NUP214 chr9:134001136 5'GT 134001136 Upstream 73bp
2175 chr3 9834352 9834352 1 + G A rs159429 9834352 + 9834332 9834372 41 GCTTGGCGGCCGAGATCTCCGCGCTGCAGTTAGCCCCGCCG GCTTGGCGGCCGAGATCTCCACGCTGCAGTTAGCCCCGCCG Direct Gain 0 0.989029085052915 NA NA prediction 0.97805817010583 Functional Gain - ARPC4;ARPC4-TTLL3;TADA3 ENSG00000171148;ENSG00000241553 UTR5 Human other chr3:9834352 chr3:9834352 . . 0 21 hm6Am_associated_SNPs_5095 0 0 1 0 1 ARPC4;ARPC4-TTLL3;TADA3 chr3:9834389 5'GT 9834389 Upstream 38bp
2176 chr2 238875716 238875716 1 + G A rs543810156 238875716 + 238875696 238875736 41 GGCCGCGTCTCGCAGCAGCCGCCCGGACCGGGCATGGTGTT GGCCGCGTCTCGCAGCAGCCACCCGGACCGGGCATGGTGTT Direct Gain 0 0.98901083364252 NA NA prediction 0.97802166728504 Functional Gain - UBE2F-SCLY ENSG00000184182;ENSG00000258984 UTR5 Human protein_coding chr2:238875716 chr2:238875716 . . 0 21 hm6Am_associated_SNPs_5096 0 0 1 0 1 UBE2F chr2:238875774 5'GT 238875774 Upstream 59bp
2177 chr19 49999687 49999687 1 + C A rs376568227 49999687 + 49999667 49999707 41 AAACCCGGACGCTGCTGCCCCTTTCTTTTTTTCAGGCGGCC AAACCCGGACGCTGCTGCCCATTTCTTTTTTTCAGGCGGCC Direct Gain 0 0.989008511183897 NA NA prediction 0.978017022367794 Functional Gain - RPS11 ENSG00000142534 UTR5 Human protein_coding chr19:49999687 chr19:49999687 . . 0 21 hm6Am_associated_SNPs_5097 0 0 1 0 1 RPS11 chr19:49999728 5'GT 49999728 Upstream 42bp
2178 chr16 57220297 57220297 1 + C A rs532577746 57220297 + 57220277 57220317 41 ATCTTTGCCGTTCTCTCGGACCTGTCACAAAGGAGTCGCGC ATCTTTGCCGTTCTCTCGGAACTGTCACAAAGGAGTCGCGC Direct Gain 0 0.988944492368477 NA NA prediction 0.977888984736955 Functional Gain - RSPRY1 ENSG00000159579 UTR5 Human protein_coding chr16:57220297 chr16:57220297 . . 0 21 hm6Am_associated_SNPs_5104 0 0 1 0 2 RSPRY1 chr16:57220341 5'GT 57220341 Upstream 45bp
2179 chr16 57220297 57220297 1 + C A rs532577746 57220297 + 57220277 57220317 41 ATCTTTGCCGTTCTCTCGGACCTGTCACAAAGGAGTCGCGC ATCTTTGCCGTTCTCTCGGAACTGTCACAAAGGAGTCGCGC Direct Gain 0 0.988944492368477 NA NA prediction 0.977888984736955 Functional Gain - RSPRY1 ENSG00000159579 UTR5 Human protein_coding chr16:57220297 chr16:57220297 . . 0 21 hm6Am_associated_SNPs_5104 0 0 1 0 2 RSPRY1 chr16:57220363 5'GT 57220363 Upstream 67bp
2180 chr1 213224755 213224755 1 + T A COAD 213224755 + 213224735 213224775 41 GGCGGCGGGAGGATGACCTCTTACCGGGAGCGGAGTGCCGA GGCGGCGGGAGGATGACCTCATACCGGGAGCGGAGTGCCGA Direct Gain 0 0.988903118102873 NA NA prediction 0.977806236205747 Functional Gain - RPS6KC1 ENSG00000136643 CDS Human protein_coding chr1:213224755 chr1:213224755 synonymous SNV . 0 21 hm6Am_associated_SNPs_5110 0 0 1 0 1 RPS6KC1 chr1:213224851 5'GT 213224851 Upstream 97bp
2181 chr13 20532968 20532968 1 + C A rs9508981 20532968 + 20532948 20532988 41 GAGGTTCGTTCCGCGGAGCCCCAGCCAGAACCGGGTGAGGC GAGGTTCGTTCCGCGGAGCCACAGCCAGAACCGGGTGAGGC Direct Gain 0 0.988875824866706 NA NA prediction 0.977751649733413 Functional Gain - ZMYM2 ENSG00000121741 UTR5 Human protein_coding chr13:20532968 chr13:20532968 . . 0 21 hm6Am_associated_SNPs_5116 0 0 1 0 1 ZMYM2 chr13:20532981 5'GT 20532981 Upstream 14bp
2182 chr19 54930427 54930427 1 + G A COAD 54930427 + 54930407 54930447 41 CCCGGGTCCAAGATCCCCTCGCCCGGGGGAGGCTGCGTCAC CCCGGGTCCAAGATCCCCTCACCCGGGGGAGGCTGCGTCAC Direct Gain 0 0.988784919726758 NA NA prediction 0.977569839453517 Functional Gain - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54930427 chr19:54930427 nonsynonymous SNV . 0 21 hm6Am_associated_SNPs_5129 0 0 0 0 1 TTYH1 chr19:54930480 5'GT 54930480 Upstream 54bp
2183 chr13 38923997 38923997 1 + G A rs111706170 38923997 + 38923977 38924017 41 GGGCGGTCCCCAGCACACTAGAGGAAGTCGTGCTACCCCCG GGGCGGTCCCCAGCACACTAAAGGAAGTCGTGCTACCCCCG Direct Gain 0 0.988541489345595 NA NA prediction 0.97708297869119 Functional Gain - UFM1 ENSG00000120686 UTR5 Human protein_coding chr13:38923997 chr13:38923997 . . 0 21 hm6Am_associated_SNPs_5159 0 0 1 0 1 UFM1 chr13:38924058 5'GT 38924058 Upstream 62bp
2184 chr6 49431129 49431129 1 + T A rs142706467 49431129 + 49431109 49431149 41 TGTTTGGGCGCGAATTACTCTAAGCGCGGCTCTCAGAAGGG TGTTTGGGCGCGAATTACTCAAAGCGCGGCTCTCAGAAGGG Direct Gain 0 0.98835121403515 NA NA prediction 0.9767024280703 Functional Gain - CENPQ ENSG00000031691 UTR5 Human protein_coding chr6:49431129 chr6:49431129 . . 0 21 hm6Am_associated_SNPs_5181 0 0 1 0 1 CENPQ chr6:49431166 5'GT 49431166 Upstream 38bp
2185 chrX 152599684 152599684 1 + G A rs782183898 152599684 + 152599664 152599704 41 CTTCCTGCCACGCCAGGCCTGCCTGGGCCGCGCCAGCGCCG CTTCCTGCCACGCCAGGCCTACCTGGGCCGCGCCAGCGCCG Direct Gain 0 0.988347439959893 NA NA prediction 0.976694879919786 Functional Gain - ZNF275 ENSG00000063587 UTR5 Human protein_coding chrX:152599684 chrX:152599684 . . 0 21 hm6Am_associated_SNPs_5183 0 0 1 0 1 ZNF275 chrX:152599743 5'GT 152599743 Upstream 60bp
2186 chr7 135347244 135347244 1 + C A rs545980371 135347244 + 135347224 135347264 41 TCGACGAGGGGTTCCGCCCCCCCCGCGCATGGGGAGGTAGG TCGACGAGGGGTTCCGCCCCACCCGCGCATGGGGAGGTAGG Direct Gain 0 0.988157208038646 NA NA prediction 0.976314416077292 Functional Gain - C7orf73 ENSG00000243317 upstream Human protein_coding chr7:135347244 chr7:135347244 . . 0 21 hm6Am_associated_SNPs_5201 0 0 0 0 1 C7orf73 chr7:135347342 5'GT 135347342 Upstream 99bp
2187 chr16 19125502 19125502 1 + C A rs538334590 19125502 + 19125482 19125522 41 GACGGCGGCGCGCGGGGGCGCCGGGCGGGGAGGGCCGCTGG GACGGCGGCGCGCGGGGGCGACGGGCGGGGAGGGCCGCTGG Direct Gain 0 0.988154217052817 NA NA prediction 0.976308434105633 Functional Gain - ITPRIPL2 ENSG00000205730 UTR5 Human other chr16:19125502 chr16:19125502 . . 0 21 hm6Am_associated_SNPs_5202 0 0 1 0 1 ITPRIPL2 chr16:19125446 3'AG 19125446 Downstream 57bp
2188 chr4 39184090 39184090 1 + C A GBM 39184090 + 39184070 39184110 41 GGTCGCTGCTCGCGCGGTCTCCTGGGTGACGGGAACGCGGT GGTCGCTGCTCGCGCGGTCTACTGGGTGACGGGAACGCGGT Direct Gain 0 0.988098000756992 NA NA prediction 0.976196001513983 Functional Gain - WDR19 ENSG00000157796 UTR5 Human protein_coding chr4:39184090 chr4:39184090 . . 0 21 hm6Am_associated_SNPs_5208 0 0 0 0 1 WDR19 chr4:39184183 5'GT 39184183 Upstream 94bp
2189 chr6 37321958 37321958 1 + C A UCEC 37321958 + 37321938 37321978 41 GCGATGGGGGAGCCCGGCTTCTTCGTCACAGGAGACCGCGC GCGATGGGGGAGCCCGGCTTATTCGTCACAGGAGACCGCGC Direct Gain 0 0.987928191037048 NA NA prediction 0.975856382074097 Functional Gain - RNF8 ENSG00000112130 CDS Human protein_coding chr6:37321958 chr6:37321958 nonsynonymous SNV 0.038 0 21 hm6Am_associated_SNPs_5229 0 0 1 0 1 RNF8 chr6:37322051 5'GT 37322051 Upstream 94bp
2190 chr19 50936194 50936194 1 + G A rs191480043 50936194 + 50936174 50936214 41 CGGCTGCGGTCAGAGGAGCAGGAGGAGGTCCCCCGACATGC CGGCTGCGGTCAGAGGAGCAAGAGGAGGTCCCCCGACATGC Direct Gain 0 0.987896166847089 NA NA prediction 0.975792333694177 Functional Gain - MYBPC2 ENSG00000086967 UTR5 Human protein_coding chr19:50936194 chr19:50936194 . . 0 21 hm6Am_associated_SNPs_5234 0 0 0 0 1 MYBPC2 chr19:50936229 5'GT 50936229 Upstream 36bp
2191 chr11 107992325 107992325 1 + T A rs3741055 107992325 + 107992305 107992345 41 GTGGAGCCGATACTCAGCCCTCTGCGACCATGGCTGTGCTG GTGGAGCCGATACTCAGCCCACTGCGACCATGGCTGTGCTG Direct Gain 0 0.987824352918526 NA NA prediction 0.975648705837052 Functional Gain - ACAT1 ENSG00000255467 ncRNA_exonic Human protein_coding chr11:107992325 chr11:107992325 . . 0 21 hm6Am_associated_SNPs_5240 2 0 1 0 1 ACAT1 chr11:107992405 5'GT 107992405 Upstream 81bp
2192 chr19 18682617 18682617 1 + C A rs150330486 18682617 + 18682597 18682637 41 ACGCAGGCGTCCGGCGTGCTCCGTGCGCAAGCGCTTTCGGC ACGCAGGCGTCCGGCGTGCTACGTGCGCAAGCGCTTTCGGC Direct Gain 0 0.987789327528819 NA NA prediction 0.975578655057638 Functional Gain - UBA52 ENSG00000221983 UTR5 Human protein_coding chr19:18682617 chr19:18682617 . . 0 21 hm6Am_associated_SNPs_5247 0 0 0 0 1 UBA52 chr19:18682697 5'GT 18682697 Upstream 81bp
2193 chr9 114287512 114287512 1 + G A rs12339085 114287512 + 114287492 114287532 41 TCTGGAAGCTCTTTGCGGTGGCGTTGGTGCTGTTTGCGGAT TCTGGAAGCTCTTTGCGGTGACGTTGGTGCTGTTTGCGGAT Direct Gain 0 0.98774491696735 NA NA prediction 0.9754898339347 Functional Gain - ZNF483 ENSG00000173258 UTR5 Human protein_coding chr9:114287512 chr9:114287512 . . 0 21 hm6Am_associated_SNPs_5252 0 0 1 0 1 ZNF483 chr9:114287542 5'GT 114287542 Upstream 31bp
2194 chr14 105156001 105156001 1 + G A rs141884370 105156001 + 105155981 105156021 41 GGAGCGCGGCAGTGGGCGCCGGCTGCCCGCAGCCCCTGACC GGAGCGCGGCAGTGGGCGCCAGCTGCCCGCAGCCCCTGACC Direct Gain 0 0.987712136971872 NA NA prediction 0.975424273943744 Functional Gain - INF2 ENSG00000203485 UTR5 Human protein_coding chr14:105156001 chr14:105156001 . . 0 21 hm6Am_associated_SNPs_5256 1 0 1 0 1 INF2 chr14:105156076 5'GT 105156076 Upstream 76bp
2195 chr12 69633416 69633416 1 + G A rs200448686 69633416 + 69633396 69633436 41 CGGCGGCGGCGGCGGCCGAGGCTGAAGGAAGATGGCGGACG CGGCGGCGGCGGCGGCCGAGACTGAAGGAAGATGGCGGACG Direct Gain 0 0.98769434667416 NA NA prediction 0.975388693348319 Functional Gain - CPSF6 ENSG00000111605 UTR5 Human protein_coding chr12:69633416 chr12:69633416 . . 0 21 hm6Am_associated_SNPs_5257 0 0 1 0 1 CPSF6 chr12:69633486 5'GT 69633486 Upstream 71bp
2196 chr19 4247119 4247119 1 + C A COAD 4247119 + 4247099 4247139 41 GCCTAACCATTTCTCAGGTGCTTGCGAGGTGATCAGAAGGC GCCTAACCATTTCTCAGGTGATTGCGAGGTGATCAGAAGGC Direct Gain 0 0.987614753029588 NA NA prediction 0.975229506059176 Functional Gain - CCDC94 ENSG00000105248 UTR5 Human protein_coding chr19:4247119 chr19:4247119 . . 0 21 hm6Am_associated_SNPs_5267 0 0 1 0 1 CCDC94 chr19:4247167 5'GT 4247167 Upstream 49bp
2197 chr1 116184621 116184621 1 + C A rs191609592 116184621 + 116184601 116184641 41 CGGCGGCGGCGGGGCTCTGCCTCTCCAGGAGCCCAGCGCAG CGGCGGCGGCGGGGCTCTGCATCTCCAGGAGCCCAGCGCAG Direct Gain 0 0.987605865823169 NA NA prediction 0.975211731646339 Functional Gain - VANGL1 ENSG00000173218 UTR5 Human protein_coding chr1:116184621 chr1:116184621 . . 0 21 hm6Am_associated_SNPs_5269 2 0 1 0 1 VANGL1 chr1:116184707 5'GT 116184707 Upstream 87bp
2198 chr15 80215418 80215418 1 - G T BLCA 80215418 - 80215398 80215438 41 CGGAGGACGTCCCGGAGGATCCCTCTGGTCGGGCGCCTGGC CGGAGGACGTCCCGGAGGATACCTCTGGTCGGGCGCCTGGC Direct Gain 0 0.987423180816013 NA NA prediction 0.974846361632025 Functional Gain - ST20-AS1 ENSG00000259642 CDS Human antisense chr15:80215418 chr15:80215418 synonymous SNV . 0 21 hm6Am_associated_SNPs_5295 0 0 1 0 1 ST20-AS1 chr15:80215381 5'GT 80215381 Upstream 38bp
2199 chr12 7342343 7342343 1 + C A rs12227917 7342343 + 7342323 7342363 41 GGTCGTGCGGCGCGGCGCTCCGCGGTGAGCGCCTGACCCCG GGTCGTGCGGCGCGGCGCTCAGCGGTGAGCGCCTGACCCCG Direct Gain 0 0.987418101467376 NA NA prediction 0.974836202934753 Functional Gain - PEX5 ENSG00000139197 UTR5 Human protein_coding chr12:7342343 chr12:7342343 . . 0 21 hm6Am_associated_SNPs_5296 0 0 1 0 1 PEX5 chr12:7342346 5'GT 7342346 Upstream 4bp
2200 chr1 235530758 235530758 1 + T A rs114193373 235530758 + 235530738 235530778 41 TCCGGCCAGAGCCTCAAGCTTCGCTGCTGGGCAGTTGGCTG TCCGGCCAGAGCCTCAAGCTACGCTGCTGGGCAGTTGGCTG Direct Gain 0 0.987373034800762 NA NA prediction 0.974746069601525 Functional Gain - TBCE ENSG00000116957 UTR5 Human protein_coding chr1:235530758 chr1:235530758 . . 0 21 hm6Am_associated_SNPs_5301 1 0 1 0 1 TBCE chr1:235530819 5'GT 235530819 Upstream 62bp
2201 chr1 28879557 28879557 1 + C A rs78405969 28879557 + 28879537 28879577 41 CTCCGCAGCCAGGATTGGCGCCCGCGCGGGCCTTCGAGCCC CTCCGCAGCCAGGATTGGCGACCGCGCGGGCCTTCGAGCCC Direct Gain 0 0.987309772500987 NA NA prediction 0.974619545001975 Functional Gain - TRNAU1AP ENSG00000180098 upstream Human protein_coding chr1:28879557 chr1:28879557 . . 0 21 hm6Am_associated_SNPs_5313 0 0 0 0 1 TRNAU1AP chr1:28879649 5'GT 28879649 Upstream 93bp
2202 chr2 232063350 232063350 1 + G A rs574614412 232063350 + 232063330 232063370 41 GTGGCGGCGGCGGTTGCCCGGGTGACGGCTGCGGAGGTGGC GTGGCGGCGGCGGTTGCCCGAGTGACGGCTGCGGAGGTGGC Direct Gain 0 0.987283229774252 NA NA prediction 0.974566459548504 Functional Gain - ARMC9 ENSG00000135931 UTR5 Human protein_coding chr2:232063350 chr2:232063350 . . 0 21 hm6Am_associated_SNPs_5316 0 0 1 0 1 ARMC9 chr2:232063412 5'GT 232063412 Upstream 63bp
2203 chr16 2255788 2255788 1 + C A rs145402479 2255788 + 2255768 2255808 41 CGCCCGCGCGTGACTCCCCCCTGCCGGCTGCGGAGGTGGGG CGCCCGCGCGTGACTCCCCCATGCCGGCTGCGGAGGTGGGG Direct Gain 0 0.987205685410068 NA NA prediction 0.974411370820136 Functional Gain - MLST8 ENSG00000167965 UTR5 Human protein_coding chr16:2255788 chr16:2255788 . . 0 21 hm6Am_associated_SNPs_5326 0 0 1 0 1 MLST8 chr16:2255876 5'GT 2255876 Upstream 89bp
2204 chr11 102218019 102218019 1 + G A rs552804964 102218019 + 102217999 102218039 41 TGATCCGAGCCGAGCGGGCCGTATCTCCTTGTCGGCGCCGC TGATCCGAGCCGAGCGGGCCATATCTCCTTGTCGGCGCCGC Direct Gain 0 0.987173447753212 NA NA prediction 0.974346895506425 Functional Gain - BIRC2 ENSG00000110330 UTR5 Human protein_coding chr11:102218019 chr11:102218019 . . 0 21 hm6Am_associated_SNPs_5328 0 0 1 0 1 BIRC2 chr11:102218107 5'GT 102218107 Upstream 89bp
2205 chr20 16710717 16710717 1 + C A rs139605159 16710717 + 16710697 16710737 41 GCGTAGGCCTTAGGTGGGTTCGTGCGCCTTCTACCTCGCTG GCGTAGGCCTTAGGTGGGTTAGTGCGCCTTCTACCTCGCTG Direct Gain 0 0.987015066208549 NA NA prediction 0.974030132417098 Functional Gain - SNRPB2 ENSG00000228809 ncRNA_intronic Human processed_transcript chr20:16710717 chr20:16710717 . . 0 21 hm6Am_associated_SNPs_5345 0 0 1 0 1 SNRPB2 chr20:16710809 5'GT 16710809 Upstream 93bp
2206 chr11 117103428 117103428 1 + G A rs546126815 117103428 + 117103408 117103448 41 CTCGGCCGCCCCCTCCCCCCGCTCCGCCCGCTCAGGTGCGT CTCGGCCGCCCCCTCCCCCCACTCCGCCCGCTCAGGTGCGT Direct Gain 0 0.986911796566546 NA NA prediction 0.973823593133093 Functional Gain - RNF214 ENSG00000167257 UTR5 Human protein_coding chr11:117103428 chr11:117103428 . . 0 21 hm6Am_associated_SNPs_5355 0 0 0 0 2 RNF214 chr11:117103442 5'GT 117103442 Upstream 15bp
2207 chr11 117103428 117103428 1 + G A rs546126815 117103428 + 117103408 117103448 41 CTCGGCCGCCCCCTCCCCCCGCTCCGCCCGCTCAGGTGCGT CTCGGCCGCCCCCTCCCCCCACTCCGCCCGCTCAGGTGCGT Direct Gain 0 0.986911796566546 NA NA prediction 0.973823593133093 Functional Gain - RNF214 ENSG00000167257 UTR5 Human protein_coding chr11:117103428 chr11:117103428 . . 0 21 hm6Am_associated_SNPs_5355 0 0 0 0 2 RNF214 chr11:117103491 5'GT 117103491 Upstream 64bp
2208 chr1 153963239 153963239 1 + C A rs188748675 153963239 + 153963219 153963259 41 CAGGATTTCCGCTTTCGCTCCTTTCCGGCGGTGACGACCTA CAGGATTTCCGCTTTCGCTCATTTCCGGCGGTGACGACCTA Direct Gain 0 0.986909516214248 NA NA prediction 0.973819032428495 Functional Gain - RPS27 ENSG00000177954 UTR5 Human protein_coding chr1:153963239 chr1:153963239 . . 0 21 hm6Am_associated_SNPs_5356 0 0 1 0 1 RPS27 chr1:153963278 5'GT 153963278 Upstream 40bp
2209 chr16 19125489 19125489 1 + G A rs549352517 19125489 + 19125469 19125509 41 CCAGAAGCTGGCCGACGGCGGCGCGCGGGGGCGCCGGGCGG CCAGAAGCTGGCCGACGGCGACGCGCGGGGGCGCCGGGCGG Direct Gain 0 0.986898390147196 NA NA prediction 0.973796780294391 Functional Gain - ITPRIPL2 ENSG00000205730 UTR5 Human other chr16:19125489 chr16:19125489 . . 0 21 hm6Am_associated_SNPs_5357 0 0 1 0 1 ITPRIPL2 chr16:19125446 3'AG 19125446 Downstream 44bp
2210 chr1 249200487 249200487 1 + C A rs146796127 249200487 + 249200467 249200507 41 GCAGGCGCAGCGCTCCGATTCGGCGCGGCTCATGGTCCGGT GCAGGCGCAGCGCTCCGATTAGGCGCGGCTCATGGTCCGGT Direct Gain 0 0.986762451327875 NA NA prediction 0.973524902655751 Functional Gain - PGBD2 ENSG00000185220 UTR5 Human protein_coding chr1:249200487 chr1:249200487 . . 0 21 hm6Am_associated_SNPs_5366 0 0 1 0 1 PGBD2 chr1:249200541 5'GT 249200541 Upstream 55bp
2211 chr19 5690304 5690304 1 + G A rs3810220 5690304 + 5690284 5690324 41 CGGAGTTCCGCGCGGCGCCAGCCCTTCCGCCACGGCCGTCT CGGAGTTCCGCGCGGCGCCAACCCTTCCGCCACGGCCGTCT Direct Gain 0 0.986584318843109 NA NA prediction 0.973168637686219 Functional Gain - RPL36 ENSG00000130255 UTR5 Human protein_coding chr19:5690304 chr19:5690304 . . 0 21 hm6Am_associated_SNPs_5391 0 0 1 0 1 RPL36 chr19:5690338 5'GT 5690338 Upstream 35bp
2212 chr2 170551132 170551132 1 + G A rs77728018 170551132 + 170551112 170551152 41 GGCTGCCGACGGCGGGACTGGGTCAGTGAGAAGCCCGTGGG GGCTGCCGACGGCGGGACTGAGTCAGTGAGAAGCCCGTGGG Direct Gain 0 0.98652277521481 NA NA prediction 0.973045550429619 Functional Gain - PHOSPHO2;PHOSPHO2-KLHL23 ENSG00000144362;ENSG00000213160 UTR5 Human other chr2:170551132 chr2:170551132 . . 0 21 hm6Am_associated_SNPs_5400 0 0 1 0 1 PHOSPHO2;PHOSPHO2-KLHL23 chr2:170551132 5'GT 170551132 Upstream 1bp
2213 chr12 54674541 54674541 1 + C A LUAD 54674541 + 54674521 54674561 41 TCAGCTTGCTCCTTTCTGCCCGTGGACGCCGCCGAAGAAGC TCAGCTTGCTCCTTTCTGCCAGTGGACGCCGCCGAAGAAGC Direct Gain 0 0.986495729714344 NA NA prediction 0.972991459428688 Functional Gain - HNRNPA1P10 ENSG00000258344 ncRNA_intronic Human protein_coding chr12:54674541 chr12:54674541 . . 0 21 hm6Am_associated_SNPs_5405 0 0 1 0 1 HNRNPA1 chr12:54674606 5'GT 54674606 Upstream 66bp
2214 chr7 107531665 107531665 1 + G A rs374293887 107531665 + 107531645 107531685 41 GGCGCCCAGCGGAGGTGAAAGTATTGGCGGAAAGGAAAATA GGCGCCCAGCGGAGGTGAAAATATTGGCGGAAAGGAAAATA Direct Gain 0 0.986464200388071 NA NA prediction 0.972928400776142 Functional Gain - DLD ENSG00000091140 UTR5 Human protein_coding chr7:107531665 chr7:107531665 . . 0 21 hm6Am_associated_SNPs_5412 0 0 1 0 1 DLD chr7:107531734 5'GT 107531734 Upstream 70bp
2215 chr17 55055498 55055498 1 + G A BLCA 55055498 + 55055478 55055518 41 GCCGGGTCCAGCCTGTTGCTGATGCTGCCGTGCGGTACTTG GCCGGGTCCAGCCTGTTGCTAATGCTGCCGTGCGGTACTTG Direct Gain 0 0.986426441146711 NA NA prediction 0.972852882293422 Functional Gain - SCPEP1 ENSG00000121064 UTR5 Human protein_coding chr17:55055498 chr17:55055498 . . 0 21 hm6Am_associated_SNPs_5418 0 0 0 0 1 SCPEP1 chr17:55055596 5'GT 55055596 Upstream 99bp
2216 chr9 131798952 131798952 1 + G A rs374282154 131798952 + 131798932 131798972 41 GCTGCCCTTCCGCAGCGATGGCATCCCGGGTGAGTATCGGC GCTGCCCTTCCGCAGCGATGACATCCCGGGTGAGTATCGGC Direct Gain 0 0.986389215512934 NA NA prediction 0.972778431025868 Functional Gain - MIGA2 ENSG00000148343 UTR5 Human protein_coding chr9:131798952 chr9:131798952 . . 0 21 hm6Am_associated_SNPs_5424 0 0 0 0 1 MIGA2 chr9:131798960 5'GT 131798960 Upstream 9bp
2217 chr5 150827301 150827301 1 + G A rs56859579 150827301 + 150827281 150827321 41 AGCAGTGAGTTCCTCCACTGGCTGCCGGCTGGCGGCGCTCG AGCAGTGAGTTCCTCCACTGACTGCCGGCTGGCGGCGCTCG Direct Gain 0 0.986382571758112 NA NA prediction 0.972765143516224 Functional Gain - SLC36A1 ENSG00000123643 UTR5 Human protein_coding chr5:150827301 chr5:150827301 . . 0 21 hm6Am_associated_SNPs_5426 0 0 1 0 1 SLC36A1 chr5:150827374 5'GT 150827374 Upstream 74bp
2218 chr1 27561359 27561359 1 + T A rs7514133 27561359 + 27561339 27561379 41 CCCCGGGATCCGCGCCCCCCTTCCCGGGAGAGGGGCCGCCC CCCCGGGATCCGCGCCCCCCATCCCGGGAGAGGGGCCGCCC Direct Gain 0 0.986352503262729 NA NA prediction 0.972705006525457 Functional Gain - WDTC1 ENSG00000142784 UTR5 Human protein_coding chr1:27561359 chr1:27561359 . . 0 21 hm6Am_associated_SNPs_5430 0 0 1 0 1 WDTC1 chr1:27561442 5'GT 27561442 Upstream 84bp
2219 chr10 88780057 88780057 1 + G A rs376532957 88780057 + 88780037 88780077 41 GGCCAGTCCTCAGCATCCTAGTTCACCACTGTCTGCTGCCA GGCCAGTCCTCAGCATCCTAATTCACCACTGTCTGCTGCCA Direct Gain 0 0.986299571195001 NA NA prediction 0.972599142390001 Functional Gain - FAM25A ENSG00000272508 ncRNA_intronic Human protein_coding chr10:88780057 chr10:88780057 . . 0 21 hm6Am_associated_SNPs_5435 0 0 0 0 1 FAM25A chr10:88780154 5'GT 88780154 Upstream 98bp
2220 chr19 18668636 18668636 1 + C A rs115804630 18668636 + 18668616 18668656 41 GGCTCCAGGGTACGTCCCCGCCACGCGCGCTCGCAGGATCG GGCTCCAGGGTACGTCCCCGACACGCGCGCTCGCAGGATCG Direct Gain 0 0.986051668094908 NA NA prediction 0.972103336189817 Functional Gain - KXD1 ENSG00000268030 ncRNA_exonic Human antisense chr19:18668636 chr19:18668636 . . 0 21 hm6Am_associated_SNPs_5475 0 0 1 0 1 KXD1 chr19:18668724 5'GT 18668724 Upstream 89bp
2221 chr8 99129541 99129541 1 + T A rs139031026 99129541 + 99129521 99129561 41 ATGCGCTCTCCAGCGCGCTCTCCAGGAGCTTTGGCTCGGTG ATGCGCTCTCCAGCGCGCTCACCAGGAGCTTTGGCTCGGTG Direct Gain 0 0.985961387396671 NA NA prediction 0.971922774793343 Functional Gain - POP1 ENSG00000104356 UTR5 Human protein_coding chr8:99129541 chr8:99129541 . . 0 21 hm6Am_associated_SNPs_5487 0 0 0 0 2 POP1 chr8:99129558 5'GT 99129558 Upstream 18bp
2222 chr8 99129541 99129541 1 + T A rs139031026 99129541 + 99129521 99129561 41 ATGCGCTCTCCAGCGCGCTCTCCAGGAGCTTTGGCTCGGTG ATGCGCTCTCCAGCGCGCTCACCAGGAGCTTTGGCTCGGTG Direct Gain 0 0.985961387396671 NA NA prediction 0.971922774793343 Functional Gain - POP1 ENSG00000104356 UTR5 Human protein_coding chr8:99129541 chr8:99129541 . . 0 21 hm6Am_associated_SNPs_5487 0 0 0 0 2 POP1 chr8:99129618 5'GT 99129618 Upstream 78bp
2223 chr17 45000529 45000529 1 + G A rs189899 45000529 + 45000509 45000549 41 CGTGTTCCGAGGAAGCCAGAGCCGGAGCCGTGGCCTGCGGG CGTGTTCCGAGGAAGCCAGAACCGGAGCCGTGGCCTGCGGG Direct Gain 0 0.985958472036373 NA NA prediction 0.971916944072746 Functional Gain - GOSR2 ENSG00000108433;ENSG00000262633 UTR5 Human other chr17:45000529 chr17:45000529 . . 0 21 hm6Am_associated_SNPs_5490 0 0 1 0 1 GOSR2 chr17:45000587 5'GT 45000587 Upstream 59bp
2224 chr1 167599639 167599639 1 + G A rs377274898 167599639 + 167599619 167599659 41 GGCGAGCGGGTGCGTCTGCCGCAGAGTCGGCACCTGAAGGA GGCGAGCGGGTGCGTCTGCCACAGAGTCGGCACCTGAAGGA Direct Gain 0 0.98593865651871 NA NA prediction 0.971877313037421 Functional Gain - RCSD1 ENSG00000241666 ncRNA_intronic Human protein_coding chr1:167599639 chr1:167599639 . . 0 21 hm6Am_associated_SNPs_5493 0 0 1 0 1 RCSD1 chr1:167599666 5'GT 167599666 Upstream 28bp
2225 chr10 12171740 12171740 1 + G A rs11257552 12171740 + 12171720 12171760 41 GCCGCGGGAGTCGAGCGAAGGCAGCGCCGAGGCCGCGGTTT GCCGCGGGAGTCGAGCGAAGACAGCGCCGAGGCCGCGGTTT Direct Gain 0 0.985927395605203 NA NA prediction 0.971854791210406 Functional Gain - SEC61A2 ENSG00000065665 UTR5 Human protein_coding chr10:12171740 chr10:12171740 . . 0 21 hm6Am_associated_SNPs_5495 0 0 1 0 1 SEC61A2 chr10:12171793 5'GT 12171793 Upstream 54bp
2226 chr19 55327934 55327934 1 + G A rs544227512 55327934 + 55327914 55327954 41 AGCTGAGCTGGGGCGCAGCCGCCTGTCTGCACCGGCAGCAC AGCTGAGCTGGGGCGCAGCCACCTGTCTGCACCGGCAGCAC Direct Gain 0 0.985907478112041 NA NA prediction 0.971814956224082 Functional Gain - KIR3DL1 ENSG00000167633 UTR5 Human protein_coding chr19:55327934 chr19:55327934 . . 0 21 hm6Am_associated_SNPs_5499 0 0 0 0 1 KIR3DL1 chr19:55327989 5'GT 55327989 Upstream 56bp
2227 chr2 170440916 170440916 1 + G A rs193256585 170440916 + 170440896 170440936 41 GGGGAGGGAGGCGGTTAGCGGGCTTTAGCGCCTTTTCTGGC GGGGAGGGAGGCGGTTAGCGAGCTTTAGCGCCTTTTCTGGC Direct Gain 0 0.985848302204086 NA NA prediction 0.971696604408173 Functional Gain - PPIG ENSG00000138398 CDS Human protein_coding chr2:170440916 chr2:170440916 nonsynonymous SNV 0.996 0 21 hm6Am_associated_SNPs_5508 0 0 1 0 2 PPIG chr2:170441000 5'GT 170441000 Upstream 85bp
2228 chr2 170440916 170440916 1 + G A rs193256585 170440916 + 170440896 170440936 41 GGGGAGGGAGGCGGTTAGCGGGCTTTAGCGCCTTTTCTGGC GGGGAGGGAGGCGGTTAGCGAGCTTTAGCGCCTTTTCTGGC Direct Gain 0 0.985848302204086 NA NA prediction 0.971696604408173 Functional Gain - PPIG ENSG00000138398 CDS Human protein_coding chr2:170440916 chr2:170440916 nonsynonymous SNV 0.996 0 21 hm6Am_associated_SNPs_5508 0 0 1 0 2 PPIG chr2:170441007 5'GT 170441007 Upstream 92bp
2229 chr14 96829850 96829850 1 + G A rs35941406 96829850 + 96829830 96829870 41 GGGAGGGAGGGGGCGGCACCGCCGGTCGGCTCCAGTCGCCT GGGAGGGAGGGGGCGGCACCACCGGTCGGCTCCAGTCGCCT Direct Gain 0 0.985787115686543 NA NA prediction 0.971574231373087 Functional Gain - GSKIP ENSG00000066739;ENSG00000100744 UTR5 Human other chr14:96829850 chr14:96829850 . . 0 21 hm6Am_associated_SNPs_5519 0 0 0 0 1 GSKIP chr14:96829905 5'GT 96829905 Upstream 56bp
2230 chr6 123317802 123317802 1 + G A COAD 123317802 + 123317782 123317822 41 CGCCCAGAGGAGTTGATGCCGCTGTCGCCGCCGCCGCCGCT CGCCCAGAGGAGTTGATGCCACTGTCGCCGCCGCCGCCGCT Direct Gain 0 0.985739074936672 NA NA prediction 0.971478149873344 Functional Gain - CLVS2 ENSG00000146352 UTR5 Human protein_coding chr6:123317802 chr6:123317802 . . 0 21 hm6Am_associated_SNPs_5527 0 0 0 0 1 CLVS2 chr6:123317891 5'GT 123317891 Upstream 90bp
2231 chr20 18448199 18448199 1 + G A HNSC 18448199 + 18448179 18448219 41 CGCCTGACGCGGATCCGGTCGAAATAGAAAACAGGTAAACC CGCCTGACGCGGATCCGGTCAAAATAGAAAACAGGTAAACC Direct Gain 0 0.985698569969384 NA NA prediction 0.971397139938768 Functional Gain - POLR3F ENSG00000132664 CDS Human protein_coding chr20:18448199 chr20:18448199 nonsynonymous SNV 0.937 1 21 hm6Am_associated_SNPs_5534 0 0 1 0 1 POLR3F chr20:18448212 5'GT 18448212 Upstream 14bp
2232 chr16 71879909 71879909 1 + G A rs374795361 71879909 + 71879889 71879929 41 GCCCGGCTGTGGGGGGCGCTGGGTGTGGGGCGGCTCCGGGG GCCCGGCTGTGGGGGGCGCTAGGTGTGGGGCGGCTCCGGGG Direct Gain 0 0.985650011036649 NA NA prediction 0.971300022073298 Functional Gain - ATXN1L ENSG00000182149;ENSG00000224470 UTR5 Human other chr16:71879909 chr16:71879909 . . 0 21 hm6Am_associated_SNPs_5541 0 0 1 0 1 ATXN1L chr16:71880007 5'GT 71880007 Upstream 99bp
2233 chr7 142960581 142960581 1 + G A rs563121100 142960581 + 142960561 142960601 41 CGGGAAAAGGAGCTCCTGCTGCCACTGCTCTTCCGGAGCCT CGGGAAAAGGAGCTCCTGCTACCACTGCTCTTCCGGAGCCT Direct Gain 0 0.985642732668707 NA NA prediction 0.971285465337414 Functional Gain - LOC105375545 ENSG00000231840 ncRNA_intronic Human protein_coding chr7:142960581 chr7:142960581 . . 0 21 hm6Am_associated_SNPs_5542 0 0 1 0 1 GSTK1 chr7:142960678 5'GT 142960678 Upstream 98bp
2234 chr7 134671415 134671415 1 + G A rs193093295 134671415 + 134671395 134671435 41 CTGGCCTGGCCAGAGGACTCGCGTGGGAGCGAGGTGCCGGC CTGGCCTGGCCAGAGGACTCACGTGGGAGCGAGGTGCCGGC Direct Gain 0 0.985611082745625 NA NA prediction 0.971222165491249 Functional Gain - AGBL3 ENSG00000146856 UTR5 Human protein_coding chr7:134671415 chr7:134671415 . . 0 21 hm6Am_associated_SNPs_5548 0 0 1 0 1 AGBL3 chr7:134671452 5'GT 134671452 Upstream 38bp
2235 chr1 203830763 203830763 1 + G A ACC 203830763 + 203830743 203830783 41 GCTCTCAGAGGCAGCGTGCGGGTGTGCTCTTTGTGAAATTC GCTCTCAGAGGCAGCGTGCGAGTGTGCTCTTTGTGAAATTC Direct Gain 0 0.98559303794008 NA NA prediction 0.97118607588016 Functional Gain - SNRPE ENSG00000182004 UTR5 Human protein_coding chr1:203830763 chr1:203830763 . . 0 21 hm6Am_associated_SNPs_5552 0 0 1 0 1 SNRPE chr1:203830841 5'GT 203830841 Upstream 79bp
2236 chr17 74723232 74723232 1 + G A rs370570077 74723232 + 74723212 74723252 41 GCCGGGTCCGGGGGCCGACGGGGCTGTCCTGGAGGTCCACG GCCGGGTCCGGGGGCCGACGAGGCTGTCCTGGAGGTCCACG Direct Gain 0 0.985585687173204 NA NA prediction 0.971171374346408 Functional Gain - METTL23 ENSG00000181038 UTR5 Human protein_coding chr17:74723232 chr17:74723232 . . 0 21 hm6Am_associated_SNPs_5554 0 0 1 0 2 METTL23 chr17:74723260 5'GT 74723260 Upstream 29bp
2237 chr17 74723232 74723232 1 + G A rs370570077 74723232 + 74723212 74723252 41 GCCGGGTCCGGGGGCCGACGGGGCTGTCCTGGAGGTCCACG GCCGGGTCCGGGGGCCGACGAGGCTGTCCTGGAGGTCCACG Direct Gain 0 0.985585687173204 NA NA prediction 0.971171374346408 Functional Gain - METTL23 ENSG00000181038 UTR5 Human protein_coding chr17:74723232 chr17:74723232 . . 0 21 hm6Am_associated_SNPs_5554 0 0 1 0 2 METTL23 chr17:74723295 5'GT 74723295 Upstream 64bp
2238 chr17 79651048 79651048 1 + C A rs114274845 79651048 + 79651028 79651068 41 GAAGTCGGGGGGCGCGCCAGCTCGTAGCAGGGGAGCGCCCG GAAGTCGGGGGGCGCGCCAGATCGTAGCAGGGGAGCGCCCG Direct Gain 0 0.985582795155178 NA NA prediction 0.971165590310357 Functional Gain - HGS ENSG00000185359 UTR5 Human protein_coding chr17:79651048 chr17:79651048 . . 0 21 hm6Am_associated_SNPs_5555 0 0 1 0 1 HGS chr17:79651133 5'GT 79651133 Upstream 86bp
2239 chr2 231280956 231280956 1 + G A rs142259495 231280956 + 231280936 231280976 41 CACTGCACGCAGGCTGGGCCGACTGAGGGGCTCAGAGGCCA CACTGCACGCAGGCTGGGCCAACTGAGGGGCTCAGAGGCCA Direct Gain 0 0.985490449253546 NA NA prediction 0.970980898507092 Functional Gain - SP100 ENSG00000067066 UTR5 Human protein_coding chr2:231280956 chr2:231280956 . . 0 21 hm6Am_associated_SNPs_5570 0 0 1 0 1 SP100 chr2:231281043 5'GT 231281043 Upstream 88bp
2240 chr14 75348650 75348650 1 + C A rs201221488 75348650 + 75348630 75348670 41 CCGCCCGCCCTCGGCTCCTCCGCCGTGATGCTGTCCCGATC CCGCCCGCCCTCGGCTCCTCAGCCGTGATGCTGTCCCGATC Direct Gain 0 0.98542712151507 NA NA prediction 0.97085424303014 Functional Gain - DLST ENSG00000119689 UTR5 Human protein_coding chr14:75348650 chr14:75348650 . . 0 21 hm6Am_associated_SNPs_5580 0 0 1 0 1 DLST chr14:75348719 5'GT 75348719 Upstream 70bp
2241 chr17 38278923 38278923 1 + G A CESC 38278923 + 38278903 38278943 41 CCCCTGCCGGCGGCAATCCTGAGCAGCGACTGGACTACGAG CCCCTGCCGGCGGCAATCCTAAGCAGCGACTGGACTACGAG Direct Gain 0 0.98518887252558 NA NA prediction 0.970377745051159 Functional Gain - MSL1 ENSG00000188895 CDS Human protein_coding chr17:38278923 chr17:38278923 nonsynonymous SNV 0.999 1 21 hm6Am_associated_SNPs_5620 0 0 1 0 1 MSL1 chr17:38279013 5'GT 38279013 Upstream 91bp
2242 chr11 60869988 60869988 1 + G A rs546900030 60869988 + 60869968 60870008 41 CCGGCCAGACACCCTCACCTGCGGTGCCCAGCTGCCCAGGC CCGGCCAGACACCCTCACCTACGGTGCCCAGCTGCCCAGGC Direct Gain 0 0.985153521287977 NA NA prediction 0.970307042575954 Functional Gain - CD5 ENSG00000110448 UTR5 Human protein_coding chr11:60869988 chr11:60869988 . . 0 21 hm6Am_associated_SNPs_5627 0 0 0 0 1 CD5 chr11:60870087 5'GT 60870087 Upstream 100bp
2243 chr5 89770768 89770768 1 + G A rs2303801 89770768 + 89770748 89770788 41 AAGCGCCGGCGTTCTCTGCCGTCACCCTTTCCTTGCCGGCC AAGCGCCGGCGTTCTCTGCCATCACCCTTTCCTTGCCGGCC Direct Gain 0 0.984956694540274 NA NA prediction 0.969913389080547 Functional Gain - POLR3G ENSG00000113356 UTR5 Human protein_coding chr5:89770768 chr5:89770768 . . 0 21 hm6Am_associated_SNPs_5661 0 0 1 0 1 POLR3G chr5:89770837 5'GT 89770837 Upstream 70bp
2244 chr2 228190129 228190129 1 + C A rs376984013 228190129 + 228190109 228190149 41 GGGGTCCTCGCCGGGACCCTCCTGTGGGCCCAGGGGTGAGT GGGGTCCTCGCCGGGACCCTACTGTGGGCCCAGGGGTGAGT Direct Gain 0 0.984933358256011 NA NA prediction 0.969866716512023 Functional Gain - MFF ENSG00000168958 UTR5 Human protein_coding chr2:228190129 chr2:228190129 . . 0 21 hm6Am_associated_SNPs_5667 0 0 1 0 1 MFF chr2:228190143 5'GT 228190143 Upstream 15bp
2245 chr15 101098944 101098944 1 + C A UCEC 101098944 + 101098924 101098964 41 AACTTGAGGGCGAAGAAATGCTTGGCGGTCTTCTCCTTCAC AACTTGAGGGCGAAGAAATGATTGGCGGTCTTCTCCTTCAC Direct Gain 0 0.984894669485506 NA NA prediction 0.969789338971011 Functional Gain - LOC102723335;PRKXP1 ENSG00000259205;ENSG00000259540 ncRNA_exonic Human other chr15:101098944 chr15:101098944 . . 0 21 hm6Am_associated_SNPs_5672 0 0 0 0 1 LOC102723335;PRKXP1 chr15:101099027 5'GT 101099027 Upstream 84bp
2246 chrX 38420803 38420803 1 + G A STAD 38420803 + 38420783 38420823 41 CGCCGGAGCTCTGTAGTATGGCATCGAGGAGAATGGAGACC CGCCGGAGCTCTGTAGTATGACATCGAGGAGAATGGAGACC Direct Gain 0 0.984867396956733 NA NA prediction 0.969734793913465 Functional Gain - TSPAN7 ENSG00000156298 CDS Human protein_coding chrX:38420803 chrX:38420803 nonsynonymous SNV 1.000 1 21 hm6Am_associated_SNPs_5676 0 0 1 0 1 TSPAN7 chrX:38420880 5'GT 38420880 Upstream 78bp
2247 chr11 111945046 111945046 1 + C A rs78421692 111945046 + 111945026 111945066 41 TTTCTCCCAAACCACTTCTTCCCCCCTACCCCCCGCCACGC TTTCTCCCAAACCACTTCTTACCCCCTACCCCCCGCCACGC Direct Gain 0 0.984854191256005 NA NA prediction 0.96970838251201 Functional Gain - C11orf57 ENSG00000150776 UTR5 Human protein_coding chr11:111945046 chr11:111945046 . . 0 21 hm6Am_associated_SNPs_5679 0 0 1 0 1 C11orf57 chr11:111945082 5'GT 111945082 Upstream 37bp
2248 chr22 42373008 42373008 1 + T A rs571954847 42373008 + 42372988 42373028 41 CGGGGAAGCCCGCGCCCCGCTCAGCCTTGCAGCCCCGCGCC CGGGGAAGCCCGCGCCCCGCACAGCCTTGCAGCCCCGCGCC Direct Gain 0 0.984739323265693 NA NA prediction 0.969478646531386 Functional Gain - SEPT3 ENSG00000100167 UTR5 Human protein_coding chr22:42373008 chr22:42373008 . . 0 21 hm6Am_associated_SNPs_5697 0 0 1 0 1 SEPT3 chr22:42373078 5'GT 42373078 Upstream 71bp
2249 chr6 89790855 89790855 1 + G A PRAD 89790855 + 89790835 89790875 41 TCCAGCAGCTCTGCCCAACCGCAGCCTCGCCGTGGCGGGAG TCCAGCAGCTCTGCCCAACCACAGCCTCGCCGTGGCGGGAG Direct Gain 0 0.984575692815342 NA NA prediction 0.969151385630683 Functional Gain - PNRC1 ENSG00000146278 CDS Human protein_coding chr6:89790855 chr6:89790855 nonsynonymous SNV 0.382 0 21 hm6Am_associated_SNPs_5722 0 0 1 0 1 PNRC1 chr6:89790916 5'GT 89790916 Upstream 62bp
2250 chr6 36562175 36562175 1 + G A rs17553386 36562175 + 36562155 36562195 41 GCCGGGTGAGTGAGAGAGTTGGTTGGTGTTGGGCCGGAGGA GCCGGGTGAGTGAGAGAGTTAGTTGGTGTTGGGCCGGAGGA Direct Gain 0 0.984499310392069 NA NA prediction 0.968998620784138 Functional Gain - SRSF3 ENSG00000112081 UTR5 Human protein_coding chr6:36562175 chr6:36562175 . . 0 21 hm6Am_associated_SNPs_5729 0 0 1 0 1 SRSF3 chr6:36562258 5'GT 36562258 Upstream 84bp
2251 chr1 28879571 28879571 1 + C A rs373690869 28879571 + 28879551 28879591 41 TTGGCGCCCGCGCGGGCCTTCGAGCCCCGCCCGCAGAGCCC TTGGCGCCCGCGCGGGCCTTAGAGCCCCGCCCGCAGAGCCC Direct Gain 0 0.984461905088272 NA NA prediction 0.968923810176543 Functional Gain - TRNAU1AP ENSG00000180098 upstream Human protein_coding chr1:28879571 chr1:28879571 . . 0 21 hm6Am_associated_SNPs_5735 0 0 0 0 1 TRNAU1AP chr1:28879649 5'GT 28879649 Upstream 79bp
2252 chr11 93862563 93862563 1 - C T COAD 93862563 - 93862543 93862583 41 GTCCACAGCCAGCTCCAGTCGCAGCCCCTTGAACTTGGGCT GTCCACAGCCAGCTCCAGTCACAGCCCCTTGAACTTGGGCT Direct Gain 0 0.984459841309776 NA NA prediction 0.968919682619552 Functional Gain - PANX1 ENSG00000110218 CDS Human protein_coding chr11:93862563 chr11:93862563 stopgain 0.998 1 21 hm6Am_associated_SNPs_5736 0 0 0 0 1 PANX1 chr11:93862495 5'GT 93862495 Upstream 69bp
2253 chr22 30279259 30279259 1 + G A rs563614733 30279259 + 30279239 30279279 41 GACGTCCCAGCGGCTCAGGCGCTGCCCAGCGCCGGCCCTGG GACGTCCCAGCGGCTCAGGCACTGCCCAGCGCCGGCCCTGG Direct Gain 0 0.984330453911804 NA NA prediction 0.968660907823608 Functional Gain - MTMR3 ENSG00000100330 UTR5 Human protein_coding chr22:30279259 chr22:30279259 . . 0 21 hm6Am_associated_SNPs_5751 0 0 1 0 1 MTMR3 chr22:30279348 5'GT 30279348 Upstream 90bp
2254 chr19 58011425 58011425 1 + G A rs551019855 58011425 + 58011405 58011445 41 CCCGGGCCCTTTCCTCGGTCGTTGTCTCACCGCCACAGGCT CCCGGGCCCTTTCCTCGGTCATTGTCTCACCGCCACAGGCT Direct Gain 0 0.984296700954006 NA NA prediction 0.968593401908012 Functional Gain - ZNF773 ENSG00000152439 UTR5 Human protein_coding chr19:58011425 chr19:58011425 . . 0 21 hm6Am_associated_SNPs_5756 0 0 1 0 1 ZNF773 chr19:58011481 5'GT 58011481 Upstream 57bp
2255 chr9 135037571 135037571 1 + G A rs7045357 135037571 + 135037551 135037591 41 GGGGAGGCGCAGCGCCGGAGGGTGGCGGTCCTCGGCCCTCC GGGGAGGCGCAGCGCCGGAGAGTGGCGGTCCTCGGCCCTCC Direct Gain 0 0.984234277711882 NA NA prediction 0.968468555423765 Functional Gain - NTNG2 ENSG00000196358 UTR5 Human protein_coding chr9:135037571 chr9:135037571 . . 0 21 hm6Am_associated_SNPs_5769 0 0 0 0 1 NTNG2 chr9:135037626 5'GT 135037626 Upstream 56bp
2256 chr1 84543970 84543970 1 + C A rs199581787 84543970 + 84543950 84543990 41 GCGGGCACGGCCCCAGCCCCCCTTCCCTTCCCTGACCCCTT GCGGGCACGGCCCCAGCCCCACTTCCCTTCCCTGACCCCTT Direct Gain 0 0.984217324719005 NA NA prediction 0.96843464943801 Functional Gain - PRKACB ENSG00000142875 UTR5 Human protein_coding chr1:84543970 chr1:84543970 . . 0 21 hm6Am_associated_SNPs_5771 0 0 1 0 1 PRKACB chr1:84544054 5'GT 84544054 Upstream 85bp
2257 chr7 73097948 73097948 1 + G A rs2293486 73097948 + 73097928 73097968 41 GTCGCAGGTGTGCTGCTGAGGCGTGAGAATGGCGTCCCGCG GTCGCAGGTGTGCTGCTGAGACGTGAGAATGGCGTCCCGCG Direct Gain 0 0.984188638560243 NA NA prediction 0.968377277120487 Functional Gain - BUD23 ENSG00000071462 UTR5 Human protein_coding chr7:73097948 chr7:73097948 . . 0 21 hm6Am_associated_SNPs_5775 0 0 1 0 1 BUD23 chr7:73098003 5'GT 73098003 Upstream 56bp
2258 chr20 34824348 34824348 1 + C A rs115879221 34824348 + 34824328 34824368 41 AGGGCTCTGCCGGACCGCTTCCCCCGTCGCTCCAGTCAGAC AGGGCTCTGCCGGACCGCTTACCCCGTCGCTCCAGTCAGAC Direct Gain 0 0.984145444935054 NA NA prediction 0.968290889870109 Functional Gain - AAR2 ENSG00000131043 upstream Human protein_coding chr20:34824348 chr20:34824348 . . 0 21 hm6Am_associated_SNPs_5786 0 0 0 0 1 AAR2 chr20:34824425 5'GT 34824425 Upstream 78bp
2259 chr7 98972340 98972340 1 + C A rs552250695 98972340 + 98972320 98972360 41 CGAGGAAGTGGCTGCTGCTCCGGCGCGGAGCCCAGAGCCGG CGAGGAAGTGGCTGCTGCTCAGGCGCGGAGCCCAGAGCCGG Direct Gain 0 0.984084570867254 NA NA prediction 0.968169141734508 Functional Gain - ARPC1B ENSG00000130429 UTR5 Human protein_coding chr7:98972340 chr7:98972340 . . 0 21 hm6Am_associated_SNPs_5795 0 0 1 0 1 ARPC1B chr7:98972404 5'GT 98972404 Upstream 65bp
2260 chr5 43121225 43121225 1 + G A rs191008067 43121225 + 43121205 43121245 41 GGAGGGCGACCCACGAGCTAGGTAAGGCGGGCCAACCCAGG GGAGGGCGACCCACGAGCTAAGTAAGGCGGGCCAACCCAGG Direct Gain 0 0.98406959909172 NA NA prediction 0.968139198183439 Functional Gain - ZNF131 ENSG00000172262 UTR5 Human protein_coding chr5:43121225 chr5:43121225 . . 0 21 hm6Am_associated_SNPs_5799 0 0 0 0 1 ZNF131 chr5:43121225 5'GT 43121225 Upstream 1bp
2261 chr16 30406821 30406821 1 + G A rs143806405 30406821 + 30406801 30406841 41 GGAGCCTGCATCCCGGAGCCGCTGGCGGCTCGGGCGCCTGC GGAGCCTGCATCCCGGAGCCACTGGCGGCTCGGGCGCCTGC Direct Gain 0 0.984045682911534 NA NA prediction 0.968091365823068 Functional Gain - ZNF48 ENSG00000180035 UTR5 Human protein_coding chr16:30406821 chr16:30406821 . . 0 21 hm6Am_associated_SNPs_5804 0 0 1 0 1 ZNF48 chr16:30406899 5'GT 30406899 Upstream 79bp
2262 chr1 155108374 155108374 1 + C A rs201598745 155108374 + 155108354 155108394 41 CGGGCGCTGGGCGCGGGATCCGACTCTAGTCGTAATGGAGG CGGGCGCTGGGCGCGGGATCAGACTCTAGTCGTAATGGAGG Direct Gain 0 0.984023154102434 NA NA prediction 0.968046308204868 Functional Gain - SLC50A1 ENSG00000169241 UTR5 Human protein_coding chr1:155108374 chr1:155108374 . . 0 21 hm6Am_associated_SNPs_5810 0 0 1 0 1 SLC50A1 chr1:155108467 5'GT 155108467 Upstream 94bp
2263 chr12 124118380 124118380 1 + G A rs200812386 124118380 + 124118360 124118400 41 CGCTCCCCTGACCACCACTTGCTCTGCGCTGAGGTGCTGGG CGCTCCCCTGACCACCACTTACTCTGCGCTGAGGTGCTGGG Direct Gain 0 0.983937100589307 NA NA prediction 0.967874201178614 Functional Gain - GTF2H3 ENSG00000111358 UTR5 Human protein_coding chr12:124118380 chr12:124118380 . . 0 21 hm6Am_associated_SNPs_5832 0 0 1 0 1 GTF2H3 chr12:124118419 5'GT 124118419 Upstream 40bp
2264 chr1 24117721 24117721 1 + G A rs539091809 24117721 + 24117701 24117741 41 AGAATCGCCCAAGCGGCCTCGGAAGTCCCAGGGAGTGGAGG AGAATCGCCCAAGCGGCCTCAGAAGTCCCAGGGAGTGGAGG Direct Gain 0 0.983896354275465 NA NA prediction 0.96779270855093 Functional Gain - LYPLA2 ENSG00000011009 UTR5 Human protein_coding chr1:24117721 chr1:24117721 . . 0 21 hm6Am_associated_SNPs_5839 0 0 1 0 1 LYPLA2 chr1:24117740 5'GT 24117740 Upstream 20bp
2265 chr2 233735027 233735027 1 + G A rs373689575 233735027 + 233735007 233735047 41 GTCCTCCGTGCGTCCCGCCCGCCGCTGCCCTCACTCCCGGC GTCCTCCGTGCGTCCCGCCCACCGCTGCCCTCACTCCCGGC Direct Gain 0 0.983868367702801 NA NA prediction 0.967736735405601 Functional Gain - C2orf82 ENSG00000182600 UTR5 Human protein_coding chr2:233735027 chr2:233735027 . . 0 21 hm6Am_associated_SNPs_5849 0 0 1 0 1 C2orf82 chr2:233735124 5'GT 233735124 Upstream 98bp
2266 chr3 52232185 52232185 1 + C A rs709315 52232185 + 52232165 52232205 41 ATCGCGGCCTGAGGCTGCTCCCGGACAAGGGCAACGAGCGT ATCGCGGCCTGAGGCTGCTCACGGACAAGGGCAACGAGCGT Direct Gain 0 0.983782089680102 NA NA prediction 0.967564179360203 Functional Gain - ALAS1 ENSG00000023330 UTR5 Human protein_coding chr3:52232185 chr3:52232185 . . 0 21 hm6Am_associated_SNPs_5860 0 0 1 0 1 ALAS1 chr3:52232271 5'GT 52232271 Upstream 87bp
2267 chr8 99129558 99129558 1 + G A rs80085618 99129558 + 99129538 99129578 41 CTCTCCAGGAGCTTTGGCTCGGTGGGTACTGTCGCGGAGGC CTCTCCAGGAGCTTTGGCTCAGTGGGTACTGTCGCGGAGGC Direct Gain 0 0.983772487195186 NA NA prediction 0.967544974390373 Functional Gain - POP1 ENSG00000104356 UTR5 Human protein_coding chr8:99129558 chr8:99129558 . . 0 21 hm6Am_associated_SNPs_5864 0 0 0 0 2 POP1 chr8:99129558 5'GT 99129558 Upstream 1bp
2268 chr8 99129558 99129558 1 + G A rs80085618 99129558 + 99129538 99129578 41 CTCTCCAGGAGCTTTGGCTCGGTGGGTACTGTCGCGGAGGC CTCTCCAGGAGCTTTGGCTCAGTGGGTACTGTCGCGGAGGC Direct Gain 0 0.983772487195186 NA NA prediction 0.967544974390373 Functional Gain - POP1 ENSG00000104356 UTR5 Human protein_coding chr8:99129558 chr8:99129558 . . 0 21 hm6Am_associated_SNPs_5864 0 0 0 0 2 POP1 chr8:99129618 5'GT 99129618 Upstream 61bp
2269 chr2 86426598 86426598 1 + G A rs184968025 86426598 + 86426578 86426618 41 TTAAACCCAAAGCGGCCGCCGTAGGCGAAGGTGAAGATGGC TTAAACCCAAAGCGGCCGCCATAGGCGAAGGTGAAGATGGC Direct Gain 0 0.983760920163437 NA NA prediction 0.967521840326873 Functional Gain - MRPL35 ENSG00000132313 UTR5 Human protein_coding chr2:86426598 chr2:86426598 . . 0 21 hm6Am_associated_SNPs_5867 0 0 1 0 1 MRPL35 chr2:86426656 5'GT 86426656 Upstream 59bp
2270 chr1 156252776 156252776 1 + C A rs181037440 156252776 + 156252756 156252796 41 CCGGCTTCTCCAAACCCTTGCGAAAAACTTTATTGGCAAAG CCGGCTTCTCCAAACCCTTGAGAAAAACTTTATTGGCAAAG Direct Gain 0 0.983747674615587 NA NA prediction 0.967495349231174 Functional Gain - SMG5 ENSG00000163472 UTR5 Human protein_coding chr1:156252776 chr1:156252776 . . 0 21 hm6Am_associated_SNPs_5873 0 0 0 0 1 SMG5 chr1:156252856 5'GT 156252856 Upstream 81bp
2271 chr19 7745745 7745745 1 + G A rs116496345 7745745 + 7745725 7745765 41 CCGTAAAGCAGCTCGGCCGAGCAGACTGCTGCGGTTCCTGG CCGTAAAGCAGCTCGGCCGAACAGACTGCTGCGGTTCCTGG Direct Gain 0 0.983739156966372 NA NA prediction 0.967478313932745 Functional Gain - TRAPPC5 ENSG00000181029 UTR5 Human protein_coding chr19:7745745 chr19:7745745 . . 0 21 hm6Am_associated_SNPs_5876 0 0 1 0 1 TRAPPC5 chr19:7745764 5'GT 7745764 Upstream 20bp
2272 chr17 28804458 28804458 1 + G A rs11870440 28804458 + 28804438 28804478 41 GTTGGACGACAAAGATGGCGGCAGGGACCAGCAGTTACTGG GTTGGACGACAAAGATGGCGACAGGGACCAGCAGTTACTGG Direct Gain 0 0.98364394500171 NA NA prediction 0.96728789000342 Functional Gain - GOSR1 ENSG00000108587 CDS Human protein_coding chr17:28804458 chr17:28804458 nonsynonymous SNV 1.000 1 21 hm6Am_associated_SNPs_5892 0 0 1 0 2 GOSR1 chr17:28804482 5'GT 28804482 Upstream 25bp
2273 chr17 28804458 28804458 1 + G A rs11870440 28804458 + 28804438 28804478 41 GTTGGACGACAAAGATGGCGGCAGGGACCAGCAGTTACTGG GTTGGACGACAAAGATGGCGACAGGGACCAGCAGTTACTGG Direct Gain 0 0.98364394500171 NA NA prediction 0.96728789000342 Functional Gain - GOSR1 ENSG00000108587 CDS Human protein_coding chr17:28804458 chr17:28804458 nonsynonymous SNV 1.000 1 21 hm6Am_associated_SNPs_5892 0 0 1 0 2 GOSR1 chr17:28804504 5'GT 28804504 Upstream 47bp
2274 chr9 140135784 140135784 1 + C A rs11545612 140135784 + 140135764 140135804 41 CTGCTGTTTGTCTACTTCCTCCTGCTTCCCCGCCGCCGCCG CTGCTGTTTGTCTACTTCCTACTGCTTCCCCGCCGCCGCCG Direct Gain 0 0.98362273521387 NA NA prediction 0.96724547042774 Functional Gain - TUBB4B ENSG00000188229 UTR5 Human protein_coding chr9:140135784 chr9:140135784 . . 0 21 hm6Am_associated_SNPs_5897 0 0 1 0 1 TUBB4B chr9:140135869 5'GT 140135869 Upstream 86bp
2275 chr17 47866174 47866174 1 + C A rs187579044 47866174 + 47866154 47866194 41 CGCCGCTGCCCGAATCGGAACCGTCGGGCCGCAGCCGCCGG CGCCGCTGCCCGAATCGGAAACGTCGGGCCGCAGCCGCCGG Direct Gain 0 0.983534932339163 NA NA prediction 0.967069864678325 Functional Gain - KAT7 ENSG00000136504 UTR5 Human protein_coding chr17:47866174 chr17:47866174 . . 0 21 hm6Am_associated_SNPs_5913 0 0 1 0 1 KAT7 chr17:47866211 5'GT 47866211 Upstream 38bp
2276 chr16 29690494 29690494 1 + C A LUAD 29690494 + 29690474 29690514 41 GGTCCTGAGCAGCCAACACACCAGCCCAGACAGCTGCAAGT GGTCCTGAGCAGCCAACACAACAGCCCAGACAGCTGCAAGT Direct Gain 0 0.983499154455643 NA NA prediction 0.966998308911285 Functional Gain - QPRT ENSG00000103485 UTR5 Human protein_coding chr16:29690494 chr16:29690494 . . 0 21 hm6Am_associated_SNPs_5916 0 0 1 1 1 QPRT chr16:29690531 5'GT 29690531 Upstream 38bp
2277 chr1 27561403 27561403 1 + G A rs530597761 27561403 + 27561383 27561423 41 CCGGACGGACATGGGCTCCTGAAGTTGCGCCGCTGCCGGTC CCGGACGGACATGGGCTCCTAAAGTTGCGCCGCTGCCGGTC Direct Gain 0 0.98344686391876 NA NA prediction 0.966893727837519 Functional Gain - WDTC1 ENSG00000142784 UTR5 Human protein_coding chr1:27561403 chr1:27561403 . . 0 21 hm6Am_associated_SNPs_5928 0 0 1 0 1 WDTC1 chr1:27561442 5'GT 27561442 Upstream 40bp
2278 chr15 90728214 90728214 1 + G A rs556639423 90728214 + 90728194 90728234 41 ACTCCGGGTCCCCAGGGGCTGCGCCGGGCCGGCCTGGCAAG ACTCCGGGTCCCCAGGGGCTACGCCGGGCCGGCCTGGCAAG Direct Gain 0 0.98332435675367 NA NA prediction 0.96664871350734 Functional Gain - SEMA4B ENSG00000185033 UTR5 Human protein_coding chr15:90728214 chr15:90728214 . . 0 21 hm6Am_associated_SNPs_5951 0 0 1 0 1 SEMA4B chr15:90728313 5'GT 90728313 Upstream 100bp
2279 chr2 30670214 30670214 1 + C A rs13404307 30670214 + 30670194 30670234 41 CCCAGCTTGCCCACGCACCCCACTCGGCGTCGCGCGGCGTG CCCAGCTTGCCCACGCACCCAACTCGGCGTCGCGCGGCGTG Direct Gain 0 0.983291385262928 NA NA prediction 0.966582770525856 Functional Gain - LCLAT1 ENSG00000172954 UTR5 Human protein_coding chr2:30670214 chr2:30670214 . . 0 21 hm6Am_associated_SNPs_5957 0 0 1 0 2 LCLAT1 chr2:30670249 5'GT 30670249 Upstream 36bp
2280 chr2 30670214 30670214 1 + C A rs13404307 30670214 + 30670194 30670234 41 CCCAGCTTGCCCACGCACCCCACTCGGCGTCGCGCGGCGTG CCCAGCTTGCCCACGCACCCAACTCGGCGTCGCGCGGCGTG Direct Gain 0 0.983291385262928 NA NA prediction 0.966582770525856 Functional Gain - LCLAT1 ENSG00000172954 UTR5 Human protein_coding chr2:30670214 chr2:30670214 . . 0 21 hm6Am_associated_SNPs_5957 0 0 1 0 2 LCLAT1 chr2:30670270 5'GT 30670270 Upstream 57bp
2281 chr12 109535522 109535522 1 + C A UCEC 109535522 + 109535502 109535542 41 GCTCTACTCCTTTTTCTCCCCCAGCCCCGCCAGGAAGCGAC GCTCTACTCCTTTTTCTCCCACAGCCCCGCCAGGAAGCGAC Direct Gain 0 0.983243162369839 NA NA prediction 0.966486324739678 Functional Gain - UNG ENSG00000076248 CDS Human protein_coding chr12:109535522 chr12:109535522 nonsynonymous SNV 0.482 3 21 hm6Am_associated_SNPs_5964 0 0 1 0 1 UNG chr12:109535616 5'GT 109535616 Upstream 95bp
2282 chr6 96025449 96025449 1 + T A rs184407817 96025449 + 96025429 96025469 41 GGGGCGCGGCGGCAGTCAGCTCTATGTTCGCGGTCTTAACC GGGGCGCGGCGGCAGTCAGCACTATGTTCGCGGTCTTAACC Direct Gain 0 0.983230024480999 NA NA prediction 0.966460048961998 Functional Gain - MANEA ENSG00000172469 UTR5 Human protein_coding chr6:96025449 chr6:96025449 . . 0 21 hm6Am_associated_SNPs_5967 0 0 1 0 1 MANEA chr6:96025514 5'GT 96025514 Upstream 66bp
2283 chr7 75544469 75544469 1 + G A rs72553977 75544469 + 75544449 75544489 41 GGCCTGAGCCCTGCCCAGGTGCCCGCAGAGAGCAGCCGGGC GGCCTGAGCCCTGCCCAGGTACCCGCAGAGAGCAGCCGGGC Direct Gain 0 0.983105092252727 NA NA prediction 0.966210184505454 Functional Gain - POR ENSG00000127948 UTR5 Human protein_coding chr7:75544469 chr7:75544469 . . 0 21 hm6Am_associated_SNPs_5987 0 0 1 0 1 POR chr7:75544497 5'GT 75544497 Upstream 29bp
2284 chr11 10879804 10879804 1 + C A rs79392141 10879804 + 10879784 10879824 41 AGCCGCAGCGGCCGTGCTACCTAGGTGATAGCGGAGCGGCT AGCCGCAGCGGCCGTGCTACATAGGTGATAGCGGAGCGGCT Direct Gain 0 0.983072231840188 NA NA prediction 0.966144463680377 Functional Gain - ZBED5-AS1 ENSG00000236287 UTR5 Human antisense chr11:10879804 chr11:10879804 . . 0 21 hm6Am_associated_SNPs_5993 0 0 0 0 1 ZBED5-AS1 chr11:10879898 5'GT 10879898 Upstream 95bp
2285 chr16 50059204 50059204 1 + G A rs374340939 50059204 + 50059184 50059224 41 GATGCGGACAGGGCAGCGGCGGTGACCCGAGCTGCCGCCCG GATGCGGACAGGGCAGCGGCAGTGACCCGAGCTGCCGCCCG Direct Gain 0 0.983045001335586 NA NA prediction 0.966090002671172 Functional Gain - CNEP1R1 ENSG00000205423 UTR5 Human protein_coding chr16:50059204 chr16:50059204 . . 0 21 hm6Am_associated_SNPs_5999 0 0 1 0 1 CNEP1R1 chr16:50059251 5'GT 50059251 Upstream 48bp
2286 chr11 58874694 58874694 1 + T A rs536582334 58874694 + 58874674 58874714 41 TGAGAGATATAAAAGAGCAGTCTTTCCAGCACCTGCAAATC TGAGAGATATAAAAGAGCAGACTTTCCAGCACCTGCAAATC Direct Gain 0 0.982970898265564 NA NA prediction 0.965941796531127 Functional Gain - FAM111B ENSG00000189057 UTR5 Human protein_coding chr11:58874694 chr11:58874694 . . 0 21 hm6Am_associated_SNPs_6008 0 0 0 0 1 FAM111B chr11:58874769 5'GT 58874769 Upstream 76bp
2287 chr2 97202518 97202518 1 + G A rs577923454 97202518 + 97202498 97202538 41 AGCGCGGGGTCCGGACAGCCGCGCGCTGAGGGTCTCGGGGC AGCGCGGGGTCCGGACAGCCACGCGCTGAGGGTCTCGGGGC Direct Gain 0 0.982944392228383 NA NA prediction 0.965888784456766 Functional Gain - ARID5A ENSG00000196843 UTR5 Human protein_coding chr2:97202518 chr2:97202518 . . 0 21 hm6Am_associated_SNPs_6018 0 0 0 0 1 ARID5A chr2:97202567 5'GT 97202567 Upstream 50bp
2288 chr12 51785167 51785167 1 - C T rs556982572 51785167 - 51785147 51785187 41 TCCTGCCTTCGCTCTCTGCTGGTCGCGGTGGCCTGTAGCTC TCCTGCCTTCGCTCTCTGCTAGTCGCGGTGGCCTGTAGCTC Direct Gain 0 0.982935630981144 NA NA prediction 0.965871261962288 Functional Gain - GALNT6;SLC4A8 ENSG00000050438;ENSG00000139629 UTR5 Human protein_coding chr12:51785167 chr12:51785167 . . 0 21 hm6Am_associated_SNPs_6019 0 0 0 0 1 GALNT6 chr12:51785071 5'GT 51785071 Upstream 97bp
2289 chr16 89238215 89238215 1 + C A rs139759411 89238215 + 89238195 89238235 41 TTCGGGTCGCGGGTGCACTCCGGCCCGGCTCCCGCCTCGGC TTCGGGTCGCGGGTGCACTCAGGCCCGGCTCCCGCCTCGGC Direct Gain 0 0.982904519248544 NA NA prediction 0.965809038497089 Functional Gain - CDH15 ENSG00000129910 UTR5 Human protein_coding chr16:89238215 chr16:89238215 . . 0 21 hm6Am_associated_SNPs_6023 0 0 0 0 1 CDH15 chr16:89238281 5'GT 89238281 Upstream 67bp
2290 chrX 12993252 12993252 1 + G A rs766788473 12993252 + 12993232 12993272 41 TCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTC TCGGTGGTGGCCACTGCGCAAACCAGACTTCGCTCGTACTC Direct Gain 0 0.982778054660443 NA NA prediction 0.965556109320887 Functional Gain - TMSB4X ENSG00000205542 UTR5 Human protein_coding chrX:12993252 chrX:12993252 . . 0 21 hm6Am_associated_SNPs_6047 0 0 1 0 1 TMSB4X chrX:12993287 5'GT 12993287 Upstream 36bp
2291 chr9 104296181 104296181 1 + C A rs571500413 104296181 + 104296161 104296201 41 TCAGGGGTGAGAGCTGGAATCTCTGCACGGGCCTTGGTGAG TCAGGGGTGAGAGCTGGAATATCTGCACGGGCCTTGGTGAG Direct Gain 0 0.982745060579566 NA NA prediction 0.965490121159132 Functional Gain - RNF20 ENSG00000155827 UTR5 Human protein_coding chr9:104296181 chr9:104296181 . . 0 21 hm6Am_associated_SNPs_6058 0 0 1 0 1 RNF20 chr9:104296196 5'GT 104296196 Upstream 16bp
2292 chr12 6833293 6833293 1 + G A rs555988220 6833293 + 6833273 6833313 41 ACGGAGCGGCGGCCCCGCCCGGTGCGCTGGAGGTCGAAGCT ACGGAGCGGCGGCCCCGCCCAGTGCGCTGGAGGTCGAAGCT Direct Gain 0 0.982648366889131 NA NA prediction 0.965296733778262 Functional Gain - COPS7A ENSG00000111652 UTR5 Human protein_coding chr12:6833293 chr12:6833293 . . 0 21 hm6Am_associated_SNPs_6080 0 0 1 0 1 COPS7A chr12:6833318 5'GT 6833318 Upstream 26bp
2293 chr19 58978475 58978475 1 + G A rs369113977 58978475 + 58978455 58978495 41 GCCCGCGTCAGGCCACACCGGTGGTCTGGGCTGGGGACCGC GCCCGCGTCAGGCCACACCGATGGTCTGGGCTGGGGACCGC Direct Gain 0 0.982648189314192 NA NA prediction 0.965296378628383 Functional Gain - ZNF324 ENSG00000083812 UTR5 Human protein_coding chr19:58978475 chr19:58978475 . . 0 21 hm6Am_associated_SNPs_6081 0 0 1 0 1 ZNF324 chr19:58978550 5'GT 58978550 Upstream 76bp
2294 chr20 31619489 31619489 1 + G A LIHC 31619489 + 31619469 31619509 41 TGCCTGGCACTCTGCAGCCTGCTGACTGGCACGCGAGCTGA TGCCTGGCACTCTGCAGCCTACTGACTGGCACGCGAGCTGA Direct Gain 0 0.982629154057802 NA NA prediction 0.965258308115605 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31619489 chr20:31619489 synonymous SNV . 0 21 hm6Am_associated_SNPs_6083 0 0 0 0 2 BPIFB6 chr20:31619550 5'GT 31619550 Upstream 62bp
2295 chr20 31619489 31619489 1 + G A LIHC 31619489 + 31619469 31619509 41 TGCCTGGCACTCTGCAGCCTGCTGACTGGCACGCGAGCTGA TGCCTGGCACTCTGCAGCCTACTGACTGGCACGCGAGCTGA Direct Gain 0 0.982629154057802 NA NA prediction 0.965258308115605 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31619489 chr20:31619489 synonymous SNV . 0 21 hm6Am_associated_SNPs_6083 0 0 0 0 2 BPIFB6 chr20:31619553 5'GT 31619553 Upstream 65bp
2296 chr11 64851781 64851781 1 + C A rs116468755 64851781 + 64851761 64851801 41 GAGAGTGGTCCCTGCCCTTCCGCGCCTCGAGCCATCGCTAC GAGAGTGGTCCCTGCCCTTCAGCGCCTCGAGCCATCGCTAC Direct Gain 0 0.98260918194669 NA NA prediction 0.965218363893379 Functional Gain - ZFPL1 ENSG00000162300 UTR5 Human protein_coding chr11:64851781 chr11:64851781 . . 0 21 hm6Am_associated_SNPs_6088 0 0 1 0 2 ZFPL1 chr11:64851832 5'GT 64851832 Upstream 52bp
2297 chr11 64851781 64851781 1 + C A rs116468755 64851781 + 64851761 64851801 41 GAGAGTGGTCCCTGCCCTTCCGCGCCTCGAGCCATCGCTAC GAGAGTGGTCCCTGCCCTTCAGCGCCTCGAGCCATCGCTAC Direct Gain 0 0.98260918194669 NA NA prediction 0.965218363893379 Functional Gain - ZFPL1 ENSG00000162300 UTR5 Human protein_coding chr11:64851781 chr11:64851781 . . 0 21 hm6Am_associated_SNPs_6088 0 0 1 0 2 ZFPL1 chr11:64851850 5'GT 64851850 Upstream 70bp
2298 chr10 97803409 97803409 1 + G A rs151011430 97803409 + 97803389 97803429 41 CGCTTAGCGGCCCACTGTCCGCAGCATGAGCGGGGCCGGCG CGCTTAGCGGCCCACTGTCCACAGCATGAGCGGGGCCGGCG Direct Gain 0 0.982464018974007 NA NA prediction 0.964928037948015 Functional Gain - ENTPD1-AS1 ENSG00000226688 ncRNA_intronic Human antisense chr10:97803409 chr10:97803409 . . 0 21 hm6Am_associated_SNPs_6124 0 0 1 0 1 ENTPD1-AS1 chr10:97803476 5'GT 97803476 Upstream 68bp
2299 chr16 66400614 66400614 1 + G A rs149648478 66400614 + 66400594 66400634 41 ACTCACGCTCAGCCCTGGACGGACAGGCAGTCCAACGGAAC ACTCACGCTCAGCCCTGGACAGACAGGCAGTCCAACGGAAC Direct Gain 0 0.982451950085246 NA NA prediction 0.964903900170491 Functional Gain - CDH5 ENSG00000179776 UTR5 Human protein_coding chr16:66400614 chr16:66400614 . . 0 21 hm6Am_associated_SNPs_6125 0 0 0 0 1 CDH5 chr16:66400661 5'GT 66400661 Upstream 48bp
2300 chr8 30601740 30601740 1 + C A COAD 30601740 + 30601720 30601760 41 GGGTTGTTGGCATTTTCTTCCTCTCTGCTGTCCCCCTTGTG GGGTTGTTGGCATTTTCTTCATCTCTGCTGTCCCCCTTGTG Direct Gain 0 0.982428268259396 NA NA prediction 0.964856536518792 Functional Gain - UBXN8 ENSG00000104691 ncRNA_exonic Human protein_coding chr8:30601740 chr8:30601740 . 0.838 2 21 hm6Am_associated_SNPs_6128 0 0 1 0 1 UBXN8 chr8:30601794 5'GT 30601794 Upstream 55bp
2301 chr19 33072152 33072152 1 + G A rs115957116 33072152 + 33072132 33072172 41 GAGTGACCGCGGCTGCTCCAGCGCTGACGCCGAGCCATGGC GAGTGACCGCGGCTGCTCCAACGCTGACGCCGAGCCATGGC Direct Gain 0 0.982412948161319 NA NA prediction 0.964825896322639 Functional Gain - PDCD5 ENSG00000105185 UTR5 Human protein_coding chr19:33072152 chr19:33072152 . . 0 21 hm6Am_associated_SNPs_6134 0 0 1 0 1 PDCD5 chr19:33072233 5'GT 33072233 Upstream 82bp
2302 chr7 57509941 57509941 1 + G A rs375359103 57509941 + 57509921 57509961 41 TTCACTGCTCTGCGTCCTCTGCTCCTGGAGGCCAAGCCTCT TTCACTGCTCTGCGTCCTCTACTCCTGGAGGCCAAGCCTCT Direct Gain 0 0.982347603829657 NA NA prediction 0.964695207659314 Functional Gain - ZNF716 ENSG00000182111 UTR5 Human protein_coding chr7:57509941 chr7:57509941 . . 0 21 hm6Am_associated_SNPs_6147 0 0 0 0 1 ZNF716 chr7:57510033 5'GT 57510033 Upstream 93bp
2303 chr8 17780614 17780614 1 + T A rs189844879 17780614 + 17780594 17780634 41 TGGGCCTCTCTGCTGCGGTCTCCGAGGGCCGACCGCTGCCG TGGGCCTCTCTGCTGCGGTCACCGAGGGCCGACCGCTGCCG Direct Gain 0 0.982342342221815 NA NA prediction 0.96468468444363 Functional Gain - PCM1 ENSG00000078674 UTR5 Human protein_coding chr8:17780614 chr8:17780614 . . 0 21 hm6Am_associated_SNPs_6148 0 0 1 0 1 PCM1 chr8:17780697 5'GT 17780697 Upstream 84bp
2304 chr14 55494091 55494091 1 + G A rs77911976 55494091 + 55494071 55494111 41 CTACACGAGGTGCAGGAGTGGTTGGGCCTCCCCTCTCCACT CTACACGAGGTGCAGGAGTGATTGGGCCTCCCCTCTCCACT Direct Gain 0 0.98231097092008 NA NA prediction 0.964621941840159 Functional Gain - SOCS4 ENSG00000180008 UTR5 Human protein_coding chr14:55494091 chr14:55494091 . . 0 21 hm6Am_associated_SNPs_6153 0 0 1 0 1 SOCS4 chr14:55494189 5'GT 55494189 Upstream 99bp
2305 chr1 1244004 1244004 1 + G A rs202246441 1244004 + 1243984 1244024 41 CGCTGGAGGCCGCCTCTGACGCCACCGGCTGGGCTCCGCCA CGCTGGAGGCCGCCTCTGACACCACCGGCTGGGCTCCGCCA Direct Gain 0 0.982277664736836 NA NA prediction 0.964555329473672 Functional Gain - PUSL1 ENSG00000169972 UTR5 Human protein_coding chr1:1244004 chr1:1244004 . . 0 21 hm6Am_associated_SNPs_6158 0 0 1 0 1 PUSL1 chr1:1244100 5'GT 1244100 Upstream 97bp
2306 chr12 16064277 16064277 1 + G A rs185593842 16064277 + 16064257 16064297 41 GGGCCGGGCGCGGCGCAGAGGCGGGCGCCTACCAGCCGGCA GGGCCGGGCGCGGCGCAGAGACGGGCGCCTACCAGCCGGCA Direct Gain 0 0.982245052007998 NA NA prediction 0.964490104015995 Functional Gain - DERA ENSG00000023697 UTR5 Human protein_coding chr12:16064277 chr12:16064277 . . 0 21 hm6Am_associated_SNPs_6167 0 0 1 0 1 DERA chr12:16064348 5'GT 16064348 Upstream 72bp
2307 chrX 48432879 48432879 1 + G A UCEC 48432879 + 48432859 48432899 41 CTACGTACTCTTTATCAATCGTCTTCCGGCGCAGCCCCGTC CTACGTACTCTTTATCAATCATCTTCCGGCGCAGCCCCGTC Direct Gain 0 0.982181545005636 NA NA prediction 0.964363090011273 Functional Gain - RBM3 ENSG00000204620 CDS Human antisense chrX:48432879 chrX:48432879 stopgain . 0 21 hm6Am_associated_SNPs_6180 0 0 1 1 1 RBM3 chrX:48432961 5'GT 48432961 Upstream 83bp
2308 chr12 121837941 121837941 1 + G A rs61733229 121837941 + 121837921 121837961 41 AATCACCGCCCAGAGGGAAGGAGGTCGGCAGTGTGAGGAGC AATCACCGCCCAGAGGGAAGAAGGTCGGCAGTGTGAGGAGC Direct Gain 0 0.981973695044439 NA NA prediction 0.963947390088877 Functional Gain - RNF34 ENSG00000170633 UTR5 Human protein_coding chr12:121837941 chr12:121837941 . . 0 21 hm6Am_associated_SNPs_6225 0 0 1 0 1 RNF34 chr12:121838021 5'GT 121838021 Upstream 81bp
2309 chr19 2820105 2820105 1 + G A rs2537856 2820105 + 2820085 2820125 41 CACCTGGGCCGGCGCGCGCGGCTCCCGGCAGCTCAGCCGTA CACCTGGGCCGGCGCGCGCGACTCCCGGCAGCTCAGCCGTA Direct Gain 0 0.981972354993339 NA NA prediction 0.963944709986679 Functional Gain - ZNF554 ENSG00000172006 CDS Human protein_coding chr19:2820105 chr19:2820105 synonymous SNV . 0 21 hm6Am_associated_SNPs_6227 0 0 0 0 1 ZNF554 chr19:2820122 5'GT 2820122 Upstream 18bp
2310 chr11 111945610 111945610 1 + G A rs59038861 111945610 + 111945590 111945630 41 AGTGGTTCTTCGTCTCACTAGCAAGATGCCTGATTTCCTCA AGTGGTTCTTCGTCTCACTAACAAGATGCCTGATTTCCTCA Direct Gain 0 0.981892215736825 NA NA prediction 0.96378443147365 Functional Gain - C11orf57 ENSG00000150776 splicing Human protein_coding chr11:111945610 chr11:111945610 . . 0 21 hm6Am_associated_SNPs_6246 0 0 1 0 1 C11orf57 chr11:111945640 5'GT 111945640 Upstream 31bp
2311 chr9 133569206 133569206 1 + G A UCEC 133569206 + 133569186 133569226 41 TGGAGATGAGGCTTCCAGTGGCTCGCAAGCCTCTTAGCGAG TGGAGATGAGGCTTCCAGTGACTCGCAAGCCTCTTAGCGAG Direct Gain 0 0.981862248258849 NA NA prediction 0.963724496517698 Functional Gain - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133569206 chr9:133569206 nonsynonymous SNV 0.639 1 21 hm6Am_associated_SNPs_6252 0 0 1 0 1 EXOSC2 chr9:133569300 5'GT 133569300 Upstream 95bp
2312 chr15 41099559 41099559 1 + G A COAD 41099559 + 41099539 41099579 41 GATCAGCCTTCCTCGCCACCGTTCTCACCTCTTTGTCCGCT GATCAGCCTTCCTCGCCACCATTCTCACCTCTTTGTCCGCT Direct Gain 0 0.981852747250427 NA NA prediction 0.963705494500854 Functional Gain - ZFYVE19 ENSG00000166140 CDS Human other chr15:41099559 chr15:41099559 nonsynonymous SNV 0.503 0 21 hm6Am_associated_SNPs_6256 0 0 0 0 1 DNAJC17;ZFYVE19 chr15:41099611 5'GT 41099611 Upstream 53bp
2313 chr2 172378889 172378889 1 + C A rs2356782 172378889 + 172378869 172378909 41 TTGGGGCCAGCTCCCCACCCCCAAGAGGCCCCACATTCCGG TTGGGGCCAGCTCCCCACCCACAAGAGGCCCCACATTCCGG Direct Gain 0 0.981825972048209 NA NA prediction 0.963651944096419 Functional Gain - CYBRD1 ENSG00000071967 UTR5 Human protein_coding chr2:172378889 chr2:172378889 . . 0 21 hm6Am_associated_SNPs_6262 0 0 0 0 1 CYBRD1 chr2:172378801 3'AG 172378801 Downstream 89bp
2314 chr17 37356561 37356561 1 + G A rs114881037 37356561 + 37356541 37356581 41 TAATGGGAGGAGCCGGGCCCGAGCGAGCTCTTTCCTTTCGC TAATGGGAGGAGCCGGGCCCAAGCGAGCTCTTTCCTTTCGC Direct Gain 0 0.981774547944119 NA NA prediction 0.963549095888238 Functional Gain - RPL19 ENSG00000108298 UTR5 Human protein_coding chr17:37356561 chr17:37356561 . . 0 21 hm6Am_associated_SNPs_6273 0 0 1 0 1 RPL19 chr17:37356602 5'GT 37356602 Upstream 42bp
2315 chr19 49999673 49999673 1 + G A rs532074969 49999673 + 49999653 49999693 41 CGTAATCGATAAGGAAACCCGGACGCTGCTGCCCCTTTCTT CGTAATCGATAAGGAAACCCAGACGCTGCTGCCCCTTTCTT Direct Gain 0 0.98175627160448 NA NA prediction 0.96351254320896 Functional Gain - RPS11 ENSG00000142534 UTR5 Human protein_coding chr19:49999673 chr19:49999673 . . 0 21 hm6Am_associated_SNPs_6278 0 0 1 0 1 RPS11 chr19:49999728 5'GT 49999728 Upstream 56bp
2316 chr3 39448228 39448228 1 + C A rs78080666 39448228 + 39448208 39448248 41 TGTCTTTTCCGTGCTACCTGCAGAGGGGTCCATACGGCGTT TGTCTTTTCCGTGCTACCTGAAGAGGGGTCCATACGGCGTT Direct Gain 0 0.981729255936816 NA NA prediction 0.963458511873633 Functional Gain - RPSA ENSG00000168028 UTR5 Human protein_coding chr3:39448228 chr3:39448228 . . 0 21 hm6Am_associated_SNPs_6284 0 0 1 0 1 RPSA chr3:39448255 5'GT 39448255 Upstream 28bp
2317 chr3 52321858 52321858 1 + C A rs577230824 52321858 + 52321838 52321878 41 CCCCCTAGTACTTCCGTTCTCCAGCGCTGGGCACCGCGGCC CCCCCTAGTACTTCCGTTCTACAGCGCTGGGCACCGCGGCC Direct Gain 0 0.981727171331189 NA NA prediction 0.963454342662378 Functional Gain - GLYCTK ENSG00000164091;ENSG00000168237 UTR5 Human other chr3:52321858 chr3:52321858 . . 0 21 hm6Am_associated_SNPs_6285 0 0 1 0 1 GLYCTK chr3:52321892 5'GT 52321892 Upstream 35bp
2318 chr5 178450888 178450888 1 + C A rs555317229 178450888 + 178450868 178450908 41 GGTGTGGAGCTGCGCGCCCCCCGCCGAGGCGGGCCCAGGTA GGTGTGGAGCTGCGCGCCCCACGCCGAGGCGGGCCCAGGTA Direct Gain 0 0.981686247786676 NA NA prediction 0.963372495573353 Functional Gain - ZNF879 ENSG00000234284 UTR5 Human protein_coding chr5:178450888 chr5:178450888 . . 0 21 hm6Am_associated_SNPs_6299 0 0 0 0 1 ZNF879 chr5:178450905 5'GT 178450905 Upstream 18bp
2319 chr6 155054949 155054949 1 + G A rs552679665 155054949 + 155054929 155054969 41 CGCCCCCTCCTCGCGGCCACGCAGCAGCCCGCGTCTCGCTC CGCCCCCTCCTCGCGGCCACACAGCAGCCCGCGTCTCGCTC Direct Gain 0 0.981671443523627 NA NA prediction 0.963342887047255 Functional Gain - SCAF8 ENSG00000213079 UTR5 Human protein_coding chr6:155054949 chr6:155054949 . 0.806 0 21 hm6Am_associated_SNPs_6303 0 0 0 0 1 SCAF8 chr6:155054929 3'AG 155054929 Downstream 21bp
2320 chr3 3168626 3168626 1 + C A rs116700990 3168626 + 3168606 3168646 41 GACGTCACCGCGTTCACCAGCCCGGAAGTGCGCGTGGCGGC GACGTCACCGCGTTCACCAGACCGGAAGTGCGCGTGGCGGC Direct Gain 0 0.981630998087592 NA NA prediction 0.963261996175184 Functional Gain - TRNT1 ENSG00000072756 UTR5 Human protein_coding chr3:3168626 chr3:3168626 . . 0 21 hm6Am_associated_SNPs_6312 0 0 0 0 1 TRNT1 chr3:3168674 5'GT 3168674 Upstream 49bp
2321 chr5 137673515 137673515 1 + G A rs56366217 137673515 + 137673495 137673535 41 GGGATTCCTTCGAAGAGGTGGTCGTGGAGGGCGGGGCAGCA GGGATTCCTTCGAAGAGGTGATCGTGGAGGGCGGGGCAGCA Direct Gain 0 0.981503591741582 NA NA prediction 0.963007183483164 Functional Gain - FAM53C ENSG00000120709 UTR5 Human protein_coding chr5:137673515 chr5:137673515 . . 0 21 hm6Am_associated_SNPs_6342 0 0 0 0 1 FAM53C chr5:137673541 5'GT 137673541 Upstream 27bp
2322 chr11 3647723 3647723 1 + G A UCEC 3647723 + 3647703 3647743 41 CCCTGTACCTGGCAGCCTTCGCACTGCGCCTCCTCCTGGCT CCCTGTACCTGGCAGCCTTCACACTGCGCCTCCTCCTGGCT Direct Gain 0 0.981438039652069 NA NA prediction 0.962876079304138 Functional Gain - TRPC2 ENSG00000182048 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3647723 chr11:3647723 . . 0 21 hm6Am_associated_SNPs_6357 0 0 0 0 1 TRPC2 chr11:3647810 5'GT 3647810 Upstream 88bp
2323 chr20 20033197 20033197 1 + G A BLCA 20033197 + 20033177 20033217 41 GGCTGCGCGTCCTCCTTGCGGCAGCGCGTGGAGTGCGGCGT GGCTGCGCGTCCTCCTTGCGACAGCGCGTGGAGTGCGGCGT Direct Gain 0 0.981395528055765 NA NA prediction 0.96279105611153 Functional Gain - CRNKL1 ENSG00000101343 CDS Human other chr20:20033197 chr20:20033197 nonsynonymous SNV . 0 21 hm6Am_associated_SNPs_6361 0 0 0 0 1 CRNKL1 chr20:20033235 5'GT 20033235 Upstream 39bp
2324 chrX 70443125 70443125 1 + G A rs190676487 70443125 + 70443105 70443145 41 GCCCAGGGACCACTCCCCCTGCACAGACATGAGACCATAGG GCCCAGGGACCACTCCCCCTACACAGACATGAGACCATAGG Direct Gain 0 0.981288683113918 NA NA prediction 0.962577366227836 Functional Gain - BCYRN1 ENSG00000169562 UTR5 Human protein_coding chrX:70443125 chrX:70443125 . . 0 21 hm6Am_associated_SNPs_6381 1 0 0 0 1 BCYRN1 chrX:70443185 5'GT 70443185 Upstream 61bp
2325 chr12 110562228 110562228 1 + G A rs549997777 110562228 + 110562208 110562248 41 TCCTGGGGGGTGGGGAAACGGTTTCGTGAGGAGAATTTGAG TCCTGGGGGGTGGGGAAACGATTTCGTGAGGAGAATTTGAG Direct Gain 0 0.98127926788836 NA NA prediction 0.96255853577672 Functional Gain - IFT81 ENSG00000122970 UTR5 Human protein_coding chr12:110562228 chr12:110562228 . . 0 21 hm6Am_associated_SNPs_6383 0 0 1 0 1 IFT81 chr12:110562248 5'GT 110562248 Upstream 21bp
2326 chr6 149887586 149887586 1 + G A rs11547034 149887586 + 149887566 149887606 41 CCGGGGTCGCTCGCCCTCCGGCTCCTGCTGTTCGTGGCGCT CCGGGGTCGCTCGCCCTCCGACTCCTGCTGTTCGTGGCGCT Direct Gain 0 0.981267625087173 NA NA prediction 0.962535250174346 Functional Gain - GINM1 ENSG00000055211 CDS Human protein_coding chr6:149887586 chr6:149887586 synonymous SNV . 0 21 hm6Am_associated_SNPs_6388 0 0 1 0 1 GINM1 chr6:149887670 5'GT 149887670 Upstream 85bp
2327 chr1 160370650 160370650 1 + G A rs111666672 160370650 + 160370630 160370670 41 CGGAGCCCACCCGGCAGTTCGCAGCGGCGGGTGAGTGCCGG CGGAGCCCACCCGGCAGTTCACAGCGGCGGGTGAGTGCCGG Direct Gain 0 0.981154585196432 NA NA prediction 0.962309170392863 Functional Gain - VANGL2 ENSG00000162738 UTR5 Human protein_coding chr1:160370650 chr1:160370650 . . 0 21 hm6Am_associated_SNPs_6410 0 0 0 0 2 VANGL2 chr1:160370563 3'AG 160370563 Downstream 88bp
2328 chr1 160370650 160370650 1 + G A rs111666672 160370650 + 160370630 160370670 41 CGGAGCCCACCCGGCAGTTCGCAGCGGCGGGTGAGTGCCGG CGGAGCCCACCCGGCAGTTCACAGCGGCGGGTGAGTGCCGG Direct Gain 0 0.981154585196432 NA NA prediction 0.962309170392863 Functional Gain - VANGL2 ENSG00000162738 UTR5 Human protein_coding chr1:160370650 chr1:160370650 . . 0 21 hm6Am_associated_SNPs_6410 0 0 0 0 2 VANGL2 chr1:160370659 5'GT 160370659 Upstream 10bp
2329 chr20 60962128 60962128 1 + G A rs545203903 60962128 + 60962108 60962148 41 GCCGAGGCCCCTCCTTGCCCGCCGATATCTCTGCCGGGTGA GCCGAGGCCCCTCCTTGCCCACCGATATCTCTGCCGGGTGA Direct Gain 0 0.981151442498035 NA NA prediction 0.962302884996071 Functional Gain - RPS21 ENSG00000171858 upstream Human protein_coding chr20:60962128 chr20:60962128 . . 0 21 hm6Am_associated_SNPs_6411 0 0 1 0 1 RPS21 chr20:60962192 5'GT 60962192 Upstream 65bp
2330 chr11 47587345 47587345 1 + C A rs562841155 47587345 + 47587325 47587365 41 CCGTTGCGGAGCTTGACGCGCCAGGTGAGCCGGGCCGGGGA CCGTTGCGGAGCTTGACGCGACAGGTGAGCCGGGCCGGGGA Direct Gain 0 0.981091995505052 NA NA prediction 0.962183991010104 Functional Gain - PTPMT1 ENSG00000110536 CDS Human protein_coding chr11:47587345 chr11:47587345 synonymous SNV . 0 21 hm6Am_associated_SNPs_6426 0 0 1 0 1 PTPMT1 chr11:47587348 5'GT 47587348 Upstream 4bp
2331 chr2 238707405 238707405 1 + G A rs568082462 238707405 + 238707385 238707425 41 ACTGTTACCCAACAGGCGCCGCGGCTGCTCCGGTGGCGCCA ACTGTTACCCAACAGGCGCCACGGCTGCTCCGGTGGCGCCA Direct Gain 0 0.981030112973892 NA NA prediction 0.962060225947784 Functional Gain - RBM44 ENSG00000177483 UTR5 Human protein_coding chr2:238707405 chr2:238707405 . . 0 21 hm6Am_associated_SNPs_6437 0 0 0 0 1 RBM44 chr2:238707504 5'GT 238707504 Upstream 100bp
2332 chr6 35436624 35436624 1 + G A rs376795337 35436624 + 35436604 35436644 41 GAGGCGGTGCGGGAAGTCCTGCACGGGAACCAGCGCAAGCG GAGGCGGTGCGGGAAGTCCTACACGGGAACCAGCGCAAGCG Direct Gain 0 0.980975685048922 NA NA prediction 0.961951370097844 Functional Gain - RPL10A ENSG00000198755 CDS Human protein_coding chr6:35436624 chr6:35436624 synonymous SNV . 0 21 hm6Am_associated_SNPs_6451 0 0 1 0 1 RPL10A chr6:35436650 5'GT 35436650 Upstream 27bp
2333 chr8 22102670 22102670 1 + G A rs529639628 22102670 + 22102650 22102690 41 TTCCGCCCGGCGCGGAGACCGAAGGCTGGCGGCTGGTCGCG TTCCGCCCGGCGCGGAGACCAAAGGCTGGCGGCTGGTCGCG Direct Gain 0 0.980970560700129 NA NA prediction 0.961941121400258 Functional Gain - POLR3D ENSG00000168495 UTR5 Human protein_coding chr8:22102670 chr8:22102670 . . 0 21 hm6Am_associated_SNPs_6452 0 0 0 0 1 POLR3D chr8:22102696 5'GT 22102696 Upstream 27bp
2334 chr20 19998006 19998006 1 + C A rs553270288 19998006 + 19997986 19998026 41 CGGCAGGGCGGGCGCGGGGTCTTGGCGAACGGTCTTCGGAA CGGCAGGGCGGGCGCGGGGTATTGGCGAACGGTCTTCGGAA Direct Gain 0 0.980936540085937 NA NA prediction 0.961873080171873 Functional Gain - NAA20 ENSG00000173418 UTR5 Human protein_coding chr20:19998006 chr20:19998006 . . 0 21 hm6Am_associated_SNPs_6459 0 0 1 0 1 NAA20 chr20:19998093 5'GT 19998093 Upstream 88bp
2335 chr14 24563621 24563621 1 + G A rs529249073 24563621 + 24563601 24563641 41 CCTGCCCAGGTGCCATGGCCGCATTGTACCGCCCTGGCCTG CCTGCCCAGGTGCCATGGCCACATTGTACCGCCCTGGCCTG Direct Gain 0 0.980887226930117 NA NA prediction 0.961774453860234 Functional Gain - PCK2 ENSG00000100889 CDS Human protein_coding chr14:24563621 chr14:24563621 nonsynonymous SNV 0.971 2 21 hm6Am_associated_SNPs_6473 0 0 1 0 1 PCK2 chr14:24563643 5'GT 24563643 Upstream 23bp
2336 chr5 115177779 115177779 1 + G A STAD 115177779 + 115177759 115177799 41 AACAACCACGGGAAGCCGCGGCTCTCCAAGTTCTACCAGCC AACAACCACGGGAAGCCGCGACTCTCCAAGTTCTACCAGCC Direct Gain 0 0.980884545923271 NA NA prediction 0.961769091846542 Functional Gain - AP3S1 ENSG00000177879 CDS Human protein_coding chr5:115177779 chr5:115177779 synonymous SNV . 0 21 hm6Am_associated_SNPs_6474 0 0 1 0 1 AP3S1 chr5:115177803 5'GT 115177803 Upstream 25bp
2337 chr6 34759847 34759847 1 + G A rs557831174 34759847 + 34759827 34759867 41 GGCGGCCGCGGCGCCGCGCTGGTGGGTGGGATCGTGGCGGA GGCGGCCGCGGCGCCGCGCTAGTGGGTGGGATCGTGGCGGA Direct Gain 0 0.980863023904536 NA NA prediction 0.961726047809073 Functional Gain - UHRF1BP1 ENSG00000065060 upstream Human protein_coding chr6:34759847 chr6:34759847 . . 0 21 hm6Am_associated_SNPs_6478 0 0 1 0 1 UHRF1BP1 chr6:34759945 5'GT 34759945 Upstream 99bp
2338 chr11 65479657 65479657 1 + G A rs375270159 65479657 + 65479637 65479677 41 TCCCCCTCTACAGGGGCTTCGTGAGGCCCGGGCCCACAGGG TCCCCCTCTACAGGGGCTTCATGAGGCCCGGGCCCACAGGG Direct Gain 0 0.980779975044411 NA NA prediction 0.961559950088822 Functional Gain - KAT5 ENSG00000172977 UTR5 Human protein_coding chr11:65479657 chr11:65479657 . . 0 21 hm6Am_associated_SNPs_6493 0 0 0 0 1 KAT5 chr11:65479750 5'GT 65479750 Upstream 94bp
2339 chr2 231090532 231090532 1 + G A rs182651769 231090532 + 231090512 231090552 41 GGAACGGGGCAGTGAAAATCGAATCGGGTGTGATCCTAGGC GGAACGGGGCAGTGAAAATCAAATCGGGTGTGATCCTAGGC Direct Gain 0 0.980741864407691 NA NA prediction 0.961483728815382 Functional Gain - SP140 ENSG00000079263 UTR5 Human protein_coding chr2:231090532 chr2:231090532 . . 0 21 hm6Am_associated_SNPs_6501 0 0 0 0 1 SP140 chr2:231090618 5'GT 231090618 Upstream 87bp
2340 chr8 144798530 144798530 1 + G A rs200998930 144798530 + 144798510 144798550 41 CGACTCAACAGTAAGGCCCCGCGGGCGTCCTGGCCGCCATG CGACTCAACAGTAAGGCCCCACGGGCGTCCTGGCCGCCATG Direct Gain 0 0.980735125342329 NA NA prediction 0.961470250684658 Functional Gain - MAPK15 ENSG00000181085 UTR5 Human protein_coding chr8:144798530 chr8:144798530 . . 0 21 hm6Am_associated_SNPs_6504 0 0 1 0 1 MAPK15 chr8:144798613 5'GT 144798613 Upstream 84bp
2341 chrX 48432868 48432868 1 + C A UCEC 48432868 + 48432848 48432888 41 GGACGTTCTCGCTACGTACTCTTTATCAATCGTCTTCCGGC GGACGTTCTCGCTACGTACTATTTATCAATCGTCTTCCGGC Direct Gain 0 0.980724386398326 NA NA prediction 0.961448772796651 Functional Gain - RBM3 ENSG00000204620 CDS Human antisense chrX:48432868 chrX:48432868 nonsynonymous SNV . 0 21 hm6Am_associated_SNPs_6506 0 0 1 1 1 RBM3 chrX:48432961 5'GT 48432961 Upstream 94bp
2342 chrX 70521702 70521702 1 + C A LUAD 70521702 + 70521682 70521722 41 GCTGTGGGCAGCACTTTGACCCTAATACCAACCTTCCTGGT GCTGTGGGCAGCACTTTGACACTAATACCAACCTTCCTGGT Direct Gain 0 0.980673918739032 NA NA prediction 0.961347837478064 Functional Gain - ITGB1BP2 ENSG00000147166 CDS Human protein_coding chrX:70521702 chrX:70521702 nonsynonymous SNV 1.000 3 21 hm6Am_associated_SNPs_6519 0 0 1 0 1 ITGB1BP2 chrX:70521720 5'GT 70521720 Upstream 19bp
2343 chr8 19171243 19171243 1 + G A rs375745079 19171243 + 19171223 19171263 41 GCGCCGCTTGGGACGCCTCTGCCTTTCCCTCCCTCCCTTCC GCGCCGCTTGGGACGCCTCTACCTTTCCCTCCCTCCCTTCC Direct Gain 0 0.980616505286009 NA NA prediction 0.961233010572018 Functional Gain - SH2D4A ENSG00000104611 UTR5 Human protein_coding chr8:19171243 chr8:19171243 . . 0 21 hm6Am_associated_SNPs_6532 0 0 0 0 1 SH2D4A chr8:19171334 5'GT 19171334 Upstream 92bp
2344 chr7 66205701 66205701 1 + G A rs528059509 66205701 + 66205681 66205721 41 AGGAGGGTGGGTGTGAGGCGGGAGCTGGCCGCGGAGCCCAG AGGAGGGTGGGTGTGAGGCGAGAGCTGGCCGCGGAGCCCAG Direct Gain 0 0.980572031814018 NA NA prediction 0.961144063628036 Functional Gain - RABGEF1 ENSG00000154710;ENSG00000243335 UTR5 Human other chr7:66205701 chr7:66205701 . . 0 21 hm6Am_associated_SNPs_6545 0 0 1 0 1 RABGEF1 chr7:66205779 5'GT 66205779 Upstream 79bp
2345 chr3 131100699 131100699 1 + G A rs16836554 131100699 + 131100679 131100719 41 GAGGCCCTGGCGCTGGGGTCGGGCTGGCGTCATGCGTGCCA GAGGCCCTGGCGCTGGGGTCAGGCTGGCGTCATGCGTGCCA Direct Gain 0 0.980566816149162 NA NA prediction 0.961133632298324 Functional Gain - NUDT16 ENSG00000198585 CDS Human protein_coding chr3:131100699 chr3:131100699 synonymous SNV . 0 21 hm6Am_associated_SNPs_6546 0 0 1 0 1 NUDT16 chr3:131100786 5'GT 131100786 Upstream 88bp
2346 chrX 53105764 53105764 1 + G A STAD 53105764 + 53105744 53105784 41 GCCCATCGAGTACCGGACTGGCTGACCCCCTAGGGTTGGCA GCCCATCGAGTACCGGACTGACTGACCCCCTAGGGTTGGCA Direct Gain 0 0.980563154602302 NA NA prediction 0.961126309204604 Functional Gain - GPR173 ENSG00000184194 UTR5 Human protein_coding chrX:53105764 chrX:53105764 . . 0 21 hm6Am_associated_SNPs_6547 0 0 0 0 1 GPR173 chrX:53105707 3'AG 53105707 Downstream 58bp
2347 chr1 24882619 24882619 1 + C A rs549943107 24882619 + 24882599 24882639 41 GGGGACCCTGGCTGGGAGCGCGGCGGTGCCGGCGGGAGGCC GGGGACCCTGGCTGGGAGCGAGGCGGTGCCGGCGGGAGGCC Direct Gain 0 0.980453287601581 NA NA prediction 0.960906575203162 Functional Gain - NCMAP ENSG00000184454 UTR5 Human protein_coding chr1:24882619 chr1:24882619 . . 0 21 hm6Am_associated_SNPs_6574 0 0 0 0 1 NCMAP chr1:24882660 5'GT 24882660 Upstream 42bp
2348 chr17 40985593 40985593 1 + C A UCEC 40985593 + 40985573 40985613 41 CAGGTCCCTCCGGCCCCCTCCCTGGAGTCCACAGCGCCTCC CAGGTCCCTCCGGCCCCCTCACTGGAGTCCACAGCGCCTCC Direct Gain 0 0.980399147096674 NA NA prediction 0.960798294193348 Functional Gain - PSME3 ENSG00000131467 UTR5 Human protein_coding chr17:40985593 chr17:40985593 . . 0 21 hm6Am_associated_SNPs_6587 0 0 1 0 1 PSME3 chr17:40985690 5'GT 40985690 Upstream 98bp
2349 chr19 54930398 54930398 1 + C A BRCA 54930398 + 54930378 54930418 41 GCTTCTGCTGCTGCCGGCCCCCCGAGCCCCCCGGGTCCAAG GCTTCTGCTGCTGCCGGCCCACCGAGCCCCCCGGGTCCAAG Direct Gain 0 0.980394676446165 NA NA prediction 0.960789352892331 Functional Gain - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54930398 chr19:54930398 nonsynonymous SNV 0.671 2 21 hm6Am_associated_SNPs_6588 0 0 0 0 2 TTYH1 chr19:54930302 3'AG 54930302 Downstream 97bp
2350 chr19 54930398 54930398 1 + C A BRCA 54930398 + 54930378 54930418 41 GCTTCTGCTGCTGCCGGCCCCCCGAGCCCCCCGGGTCCAAG GCTTCTGCTGCTGCCGGCCCACCGAGCCCCCCGGGTCCAAG Direct Gain 0 0.980394676446165 NA NA prediction 0.960789352892331 Functional Gain - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54930398 chr19:54930398 nonsynonymous SNV 0.671 2 21 hm6Am_associated_SNPs_6588 0 0 0 0 2 TTYH1 chr19:54930480 5'GT 54930480 Upstream 83bp
2351 chr3 155588605 155588605 1 + T A rs145921544 155588605 + 155588585 155588625 41 CGCCGACCCTTCCGGCACCCTCCCGCCCCGTCTCGTACTGT CGCCGACCCTTCCGGCACCCACCCGCCCCGTCTCGTACTGT Direct Gain 0 0.980370197367852 NA NA prediction 0.960740394735704 Functional Gain - GMPS ENSG00000163655 UTR5 Human protein_coding chr3:155588605 chr3:155588605 . . 0 21 hm6Am_associated_SNPs_6594 0 0 1 0 1 GMPS chr3:155588686 5'GT 155588686 Upstream 82bp
2352 chr2 220071558 220071558 1 + G A rs527687223 220071558 + 220071538 220071578 41 CGCCGGGGGCCGGCTGGCGCGGGGGCTCCGGTAACCCGGGC CGCCGGGGGCCGGCTGGCGCAGGGGCTCCGGTAACCCGGGC Direct Gain 0 0.98029194355087 NA NA prediction 0.96058388710174 Functional Gain - ZFAND2B ENSG00000158552 UTR5 Human protein_coding chr2:220071558 chr2:220071558 . . 0 21 hm6Am_associated_SNPs_6611 0 0 1 0 1 ZFAND2B chr2:220071567 5'GT 220071567 Upstream 10bp
2353 chr16 72821615 72821615 1 + G A BLCA 72821615 + 72821595 72821635 41 CCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCC CCGCCGCCGCCGCCGCCGCCACCACCGCCGCCGCCGCCGCC Direct Gain 0 0.98022622264647 NA NA prediction 0.960452445292939 Functional Gain - ZFHX3 ENSG00000140836 CDS Human protein_coding chr16:72821615 chr16:72821615 synonymous SNV . 0 21 hm6Am_associated_SNPs_6626 0 0 1 0 1 ZFHX3 chr16:72821562 3'AG 72821562 Downstream 54bp
2354 chrX 12993247 12993247 1 + G A rs756378078 12993247 + 12993227 12993267 41 ACAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCG ACAACTCGGTGGTGGCCACTACGCAGACCAGACTTCGCTCG Direct Gain 0 0.980187414447552 NA NA prediction 0.960374828895105 Functional Gain - TMSB4X ENSG00000205542 UTR5 Human protein_coding chrX:12993247 chrX:12993247 . . 0 21 hm6Am_associated_SNPs_6636 0 0 1 0 1 TMSB4X chrX:12993287 5'GT 12993287 Upstream 41bp
2355 chr19 58111434 58111434 1 + G A rs201531039 58111434 + 58111414 58111454 41 TTTGCTCTTGTCTCCGCCCGGATCGTCCACCGCTCCCGGCC TTTGCTCTTGTCTCCGCCCGAATCGTCCACCGCTCCCGGCC Direct Gain 0 0.980184183249426 NA NA prediction 0.960368366498851 Functional Gain - ZNF530 ENSG00000183647 UTR5 Human protein_coding chr19:58111434 chr19:58111434 . . 0 21 hm6Am_associated_SNPs_6638 0 0 1 0 1 ZNF530 chr19:58111502 5'GT 58111502 Upstream 69bp
2356 chr3 45928109 45928109 1 + G A rs182135903 45928109 + 45928089 45928129 41 CCAGACACTGAGAGCTGGTGGTGCCTGCTGTCCCAGGGAGA CCAGACACTGAGAGCTGGTGATGCCTGCTGTCCCAGGGAGA Direct Gain 0 0.980174028640923 NA NA prediction 0.960348057281846 Functional Gain - CCR9 ENSG00000173585 UTR5 Human protein_coding chr3:45928109 chr3:45928109 . . 0 21 hm6Am_associated_SNPs_6641 0 0 0 0 1 CCR9 chr3:45928147 5'GT 45928147 Upstream 39bp
2357 chr5 121297710 121297710 1 + C A rs189682790 121297710 + 121297690 121297730 41 ACGTGCAGGCAGCGGCGGATCATATTCCTTCATCTACCATG ACGTGCAGGCAGCGGCGGATAATATTCCTTCATCTACCATG Direct Gain 0 0.980169250644062 NA NA prediction 0.960338501288125 Functional Gain - SRFBP1 ENSG00000151304 UTR5 Human protein_coding chr5:121297710 chr5:121297710 . . 0 21 hm6Am_associated_SNPs_6642 0 0 1 0 1 SRFBP1 chr5:121297763 5'GT 121297763 Upstream 54bp
2358 chr8 144329249 144329249 1 + G A rs117399188 144329249 + 144329229 144329269 41 CCCGCCCTCCAGCAGTCCTGGTAGGGCCCGGGCGCGTCCGC CCCGCCCTCCAGCAGTCCTGATAGGGCCCGGGCGCGTCCGC Direct Gain 0 0.980137865793034 NA NA prediction 0.960275731586067 Functional Gain - ZFP41 ENSG00000181638 UTR5 Human other chr8:144329249 chr8:144329249 . . 0 21 hm6Am_associated_SNPs_6654 0 0 1 0 1 ZFP41 chr8:144329312 5'GT 144329312 Upstream 64bp
2359 chr15 89164581 89164581 1 + C A rs117218125 89164581 + 89164561 89164601 41 TGCCGGCTTTCCGGACGCCACGTGCAGACCGGAAGAGACAC TGCCGGCTTTCCGGACGCCAAGTGCAGACCGGAAGAGACAC Direct Gain 0 0.980128614006206 NA NA prediction 0.960257228012412 Functional Gain - AEN ENSG00000181026 UTR5 Human protein_coding chr15:89164581 chr15:89164581 . . 0 21 hm6Am_associated_SNPs_6656 0 0 1 0 1 AEN chr15:89164613 5'GT 89164613 Upstream 33bp
2360 chr22 39493251 39493251 1 + T A rs41281251 39493251 + 39493231 39493271 41 ACTTTTGGGAGAGCTGACCTTTTGTGACTTTTGGGAGAGCT ACTTTTGGGAGAGCTGACCTATTGTGACTTTTGGGAGAGCT Direct Gain 0 0.980100858386166 NA NA prediction 0.960201716772332 Functional Gain - APOBEC3H ENSG00000100298 UTR5 Human protein_coding chr22:39493251 chr22:39493251 . . 0 21 hm6Am_associated_SNPs_6665 0 0 0 0 1 APOBEC3H chr22:39493348 5'GT 39493348 Upstream 98bp
2361 chr1 16330788 16330788 1 + G A rs200538635 16330788 + 16330768 16330808 41 GCCAGAGCTAGGCAGGCGCCGAAGTAGCCGCATGGCCCCGT GCCAGAGCTAGGCAGGCGCCAAAGTAGCCGCATGGCCCCGT Direct Gain 0 0.980052283821188 NA NA prediction 0.960104567642376 Functional Gain - C1orf64 ENSG00000183888 UTR5 Human protein_coding chr1:16330788 chr1:16330788 . . 0 21 hm6Am_associated_SNPs_6679 0 0 1 0 1 C1orf64 chr1:16330880 5'GT 16330880 Upstream 93bp
2362 chr17 43971972 43971972 1 + G A rs573336342 43971972 + 43971952 43971992 41 ACAGCAGCGCCGCTGCCACCGCCCACCTTCTGCCGCCGCCA ACAGCAGCGCCGCTGCCACCACCCACCTTCTGCCGCCGCCA Direct Gain 0 0.979936042249745 NA NA prediction 0.959872084499489 Functional Gain - MAPT-AS1 ENSG00000264589 ncRNA_intronic Human antisense chr17:43971972 chr17:43971972 . . 0 21 hm6Am_associated_SNPs_6704 0 0 0 0 1 MAPT-AS1 chr17:43972052 5'GT 43972052 Upstream 81bp
2363 chr9 100263990 100263990 1 + G A rs537393194 100263990 + 100263970 100264010 41 CGCTCGCCCGCCCGCTGCCCGCCGGAGCACCGCGGCCTCCG CGCTCGCCCGCCCGCTGCCCACCGGAGCACCGCGGCCTCCG Direct Gain 0 0.979892712683761 NA NA prediction 0.959785425367521 Functional Gain - TMOD1 ENSG00000136842 UTR5 Human protein_coding chr9:100263990 chr9:100263990 . . 0 21 hm6Am_associated_SNPs_6713 0 0 1 0 1 TMOD1 chr9:100264085 5'GT 100264085 Upstream 96bp
2364 chr2 39103168 39103168 1 + C A rs113541317 39103168 + 39103148 39103188 41 CGCACCTGGAGCTGTCCTAGCGCCTAGTTCTCTCCCGGCCG CGCACCTGGAGCTGTCCTAGAGCCTAGTTCTCTCCCGGCCG Direct Gain 0 0.979799653950106 NA NA prediction 0.959599307900212 Functional Gain - MORN2 ENSG00000188010 UTR5 Human protein_coding chr2:39103168 chr2:39103168 . . 0 21 hm6Am_associated_SNPs_6740 0 0 1 0 1 MORN2 chr2:39103251 5'GT 39103251 Upstream 84bp
2365 chr20 3801261 3801261 1 + G A rs139675090 3801261 + 3801241 3801281 41 TCCGCGGGCCCGGACGGAAGGCTGAGGCGACGCCTCGACGA TCCGCGGGCCCGGACGGAAGACTGAGGCGACGCCTCGACGA Direct Gain 0 0.979773149318279 NA NA prediction 0.959546298636557 Functional Gain - AP5S1 ENSG00000125843 UTR5 Human protein_coding chr20:3801261 chr20:3801261 . . 0 21 hm6Am_associated_SNPs_6749 0 0 1 0 1 AP5S1 chr20:3801349 5'GT 3801349 Upstream 89bp
2366 chr19 4791930 4791930 1 - C T rs182924914 4791930 - 4791910 4791950 41 CCGGCTCCGGCCGCTGAGCAGCTTCTGGAGCAGCTGCAGCT CCGGCTCCGGCCGCTGAGCAACTTCTGGAGCAGCTGCAGCT Direct Gain 0 0.979759444051089 NA NA prediction 0.959518888102177 Functional Gain - FEM1A ENSG00000141965 CDS Human protein_coding chr19:4791930 chr19:4791930 synonymous SNV . 0 21 hm6Am_associated_SNPs_6750 0 0 0 0 1 FEM1A chr19:4792025 3'AG 4792025 Downstream 96bp
2367 chr10 135122507 135122507 1 + G A rs3008357 135122507 + 135122487 135122527 41 GGGCCCGGGGCGGCGGAGCCGCTGCCTGTAGAGCGGGATCC GGGCCCGGGGCGGCGGAGCCACTGCCTGTAGAGCGGGATCC Direct Gain 0 0.979728756099751 NA NA prediction 0.959457512199501 Functional Gain - ZNF511 ENSG00000198546 CDS Human protein_coding chr10:135122507 chr10:135122507 synonymous SNV . 0 21 hm6Am_associated_SNPs_6759 0 0 1 0 1 ZNF511 chr10:135122600 5'GT 135122600 Upstream 94bp
2368 chrX 46306687 46306687 1 + G A rs182784685 46306687 + 46306667 46306707 41 CGCGTTCCCAGGGGGCGGTGGGAAGCGGAAGTGCTCCGCTG CGCGTTCCCAGGGGGCGGTGAGAAGCGGAAGTGCTCCGCTG Direct Gain 0 0.979714663282263 NA NA prediction 0.959429326564526 Functional Gain - KRBOX4 ENSG00000147121 UTR5 Human protein_coding chrX:46306687 chrX:46306687 . . 0 21 hm6Am_associated_SNPs_6765 0 0 0 0 1 KRBOX4 chrX:46306781 5'GT 46306781 Upstream 95bp
2369 chr3 179322636 179322636 1 + G A KIRP 179322636 + 179322616 179322656 41 AGTTTGTTGCGGCGGGTTTCGGTTACTGCGGTGGCAGCTCT AGTTTGTTGCGGCGGGTTTCAGTTACTGCGGTGGCAGCTCT Direct Gain 0 0.979705362167503 NA NA prediction 0.959410724335006 Functional Gain - NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179322636 chr3:179322636 nonsynonymous SNV . 0 21 hm6Am_associated_SNPs_6768 0 0 1 1 1 NDUFB5 chr3:179322727 5'GT 179322727 Upstream 92bp
2370 chrX 48620183 48620183 1 + G A rs5906707 48620183 + 48620163 48620203 41 GGAGGACCCTGGGCAAAGACGCCTACCCTGCCATGCTGCGC GGAGGACCCTGGGCAAAGACACCTACCCTGCCATGCTGCGC Direct Gain 0 0.97960578101598 NA NA prediction 0.959211562031959 Functional Gain - GLOD5 ENSG00000171433 UTR5 Human protein_coding chrX:48620183 chrX:48620183 . . 0 21 hm6Am_associated_SNPs_6791 0 0 0 0 1 GLOD5 chrX:48620257 5'GT 48620257 Upstream 75bp
2371 chr19 40854623 40854623 1 + G A rs547574424 40854623 + 40854603 40854643 41 GGCCGTCAGGCGGGGATACAGCCTGGAAGGTGCGTGTGGGG GGCCGTCAGGCGGGGATACAACCTGGAAGGTGCGTGTGGGG Direct Gain 0 0.979523867102457 NA NA prediction 0.959047734204915 Functional Gain - PLD3 ENSG00000105223 UTR5 Human protein_coding chr19:40854623 chr19:40854623 . . 0 21 hm6Am_associated_SNPs_6819 0 0 1 0 2 PLD3 chr19:40854631 5'GT 40854631 Upstream 9bp
2372 chr19 40854623 40854623 1 + G A rs547574424 40854623 + 40854603 40854643 41 GGCCGTCAGGCGGGGATACAGCCTGGAAGGTGCGTGTGGGG GGCCGTCAGGCGGGGATACAACCTGGAAGGTGCGTGTGGGG Direct Gain 0 0.979523867102457 NA NA prediction 0.959047734204915 Functional Gain - PLD3 ENSG00000105223 UTR5 Human protein_coding chr19:40854623 chr19:40854623 . . 0 21 hm6Am_associated_SNPs_6819 0 0 1 0 2 PLD3 chr19:40854675 5'GT 40854675 Upstream 53bp
2373 chr22 38246007 38246007 1 + T A rs200410918 38246007 + 38245987 38246027 41 GGCGGCTGTCCTTGACTGTGTCTCTTTCCTTCTAGGCGGCT GGCGGCTGTCCTTGACTGTGACTCTTTCCTTCTAGGCGGCT Direct Gain 0 0.979427042345773 NA NA prediction 0.958854084691547 Functional Gain - EIF3L ENSG00000100129 UTR5 Human protein_coding chr22:38246007 chr22:38246007 . . 0 21 hm6Am_associated_SNPs_6839 0 0 1 0 1 EIF3L chr22:38246070 5'GT 38246070 Upstream 64bp
2374 chr2 105954070 105954070 1 + G A UCEC 105954070 + 105954050 105954090 41 GGGGGATGTGGGCGGTCGCAGCTGCACGGACTCGGAACTGC GGGGGATGTGGGCGGTCGCAACTGCACGGACTCGGAACTGC Direct Gain 0 0.979416060585504 NA NA prediction 0.958832121171008 Functional Gain - C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105954070 chr2:105954070 nonsynonymous SNV 1.000 0 21 hm6Am_associated_SNPs_6840 0 0 1 0 1 C2orf49 chr2:105954143 5'GT 105954143 Upstream 74bp
2375 chr2 65215729 65215729 1 + G A rs190292992 65215729 + 65215709 65215749 41 CAGGGGCGCCGGGTTTGGTGGCACAGCGAGCCCCCTTTCTC CAGGGGCGCCGGGTTTGGTGACACAGCGAGCCCCCTTTCTC Direct Gain 0 0.97936527374917 NA NA prediction 0.958730547498339 Functional Gain - SLC1A4 ENSG00000115902 UTR5 Human protein_coding chr2:65215729 chr2:65215729 . . 0 21 hm6Am_associated_SNPs_6850 0 0 1 0 1 SLC1A4 chr2:65215754 5'GT 65215754 Upstream 26bp
2376 chr6 90143021 90143021 1 + T A rs533891576 90143021 + 90143001 90143041 41 CCAGCGGGAGCCAGTCCCCGTCTTCGCCCCTCGCCCCCCAC CCAGCGGGAGCCAGTCCCCGACTTCGCCCCTCGCCCCCCAC Direct Gain 0 0.979363325053267 NA NA prediction 0.958726650106534 Functional Gain - ANKRD6 ENSG00000135299 UTR5 Human protein_coding chr6:90143021 chr6:90143021 . . 0 21 hm6Am_associated_SNPs_6851 0 0 1 0 1 ANKRD6 chr6:90143094 5'GT 90143094 Upstream 74bp
2377 chr17 48610129 48610129 1 + G A rs2305999 48610129 + 48610109 48610149 41 GCGCTGGCTAGGAGGCAAACGCACGCGGGAAGAGCTGCTAC GCGCTGGCTAGGAGGCAAACACACGCGGGAAGAGCTGCTAC Direct Gain 0 0.979236351134741 NA NA prediction 0.958472702269482 Functional Gain - EPN3 ENSG00000049283 UTR5 Human protein_coding chr17:48610129 chr17:48610129 . . 0 21 hm6Am_associated_SNPs_6881 0 0 0 0 1 EPN3 chr17:48610205 5'GT 48610205 Upstream 77bp
2378 chr6 170102276 170102276 1 + C A rs141767157 170102276 + 170102256 170102296 41 CGGATGTATAAAGCGCGGCCCCCTGCGGGGAGTGGTGGTGA CGGATGTATAAAGCGCGGCCACCTGCGGGGAGTGGTGGTGA Direct Gain 0 0.979195881696772 NA NA prediction 0.958391763393543 Functional Gain - C6orf120 ENSG00000185127 CDS Human protein_coding chr6:170102276 chr6:170102276 synonymous SNV . 0 21 hm6Am_associated_SNPs_6896 0 0 1 0 1 C6orf120 chr6:170102292 5'GT 170102292 Upstream 17bp
2379 chr10 80829006 80829006 1 + G A rs570744351 80829006 + 80828986 80829026 41 CGGCGCGTCCTCCAGCGGCGGCAGCGGCGCTCGCAGCGCCC CGGCGCGTCCTCCAGCGGCGACAGCGGCGCTCGCAGCGCCC Direct Gain 0 0.979184163778653 NA NA prediction 0.958368327557307 Functional Gain - ZMIZ1 ENSG00000108175 UTR5 Human protein_coding chr10:80829006 chr10:80829006 . . 0 21 hm6Am_associated_SNPs_6900 0 0 1 0 1 ZMIZ1 chr10:80829027 5'GT 80829027 Upstream 22bp
2380 chr20 2633288 2633288 1 + G A rs117836784 2633288 + 2633268 2633308 41 CGCTAGCCGCATTGCGAGCCGAACCCGGGAGCTGGCGCCAT CGCTAGCCGCATTGCGAGCCAAACCCGGGAGCTGGCGCCAT Direct Gain 0 0.979103028046242 NA NA prediction 0.958206056092484 Functional Gain - NOP56 ENSG00000101361 UTR5 Human protein_coding chr20:2633288 chr20:2633288 . . 0 21 hm6Am_associated_SNPs_6923 0 0 1 0 1 NOP56 chr20:2633309 5'GT 2633309 Upstream 22bp
2381 chr9 115913321 115913321 1 + G A rs369127331 115913321 + 115913301 115913341 41 CGAGGAGACCCGAGCGAGCAGACGCGGCCCTGGCGCCCGCC CGAGGAGACCCGAGCGAGCAAACGCGGCCCTGGCGCCCGCC Direct Gain 0 0.979028830419408 NA NA prediction 0.958057660838816 Functional Gain - SLC31A2 ENSG00000136867 UTR5 Human protein_coding chr9:115913321 chr9:115913321 . . 0 21 hm6Am_associated_SNPs_6949 0 0 0 0 1 SLC31A2 chr9:115913360 5'GT 115913360 Upstream 40bp
2382 chr12 58138905 58138905 1 + C A CESC 58138905 + 58138885 58138925 41 CAATACCCTCCCCCCAAGTCCTTGGGACCACTTGGGTCCCC CAATACCCTCCCCCCAAGTCATTGGGACCACTTGGGTCCCC Direct Gain 0 0.978971255306559 NA NA prediction 0.957942510613118 Functional Gain - TSPAN31 ENSG00000135452 UTR5 Human protein_coding chr12:58138905 chr12:58138905 . . 0 21 hm6Am_associated_SNPs_6964 0 0 1 0 1 TSPAN31 chr12:58139000 5'GT 58139000 Upstream 96bp
2383 chr5 102595427 102595427 1 + G A rs147501877 102595427 + 102595407 102595447 41 GGGCCCGGTCCGAGCCAGAAGCTTAAGCGGCAGATGTCGGG GGGCCCGGTCCGAGCCAGAAACTTAAGCGGCAGATGTCGGG Direct Gain 0 0.978957068553894 NA NA prediction 0.957914137107788 Functional Gain - C5orf30 ENSG00000181751 UTR5 Human protein_coding chr5:102595427 chr5:102595427 . . 0 21 hm6Am_associated_SNPs_6967 0 0 1 0 1 C5orf30 chr5:102595492 5'GT 102595492 Upstream 66bp
2384 chr15 78832819 78832819 1 + G A rs73463040 78832819 + 78832799 78832839 41 TTATTCGGTGAGCGGTGGTGGTTTATTCTTCCGTGGAGTTA TTATTCGGTGAGCGGTGGTGATTTATTCTTCCGTGGAGTTA Direct Gain 0 0.978934159962595 NA NA prediction 0.95786831992519 Functional Gain - PSMA4 ENSG00000041357 UTR5 Human protein_coding chr15:78832819 chr15:78832819 . . 0 21 hm6Am_associated_SNPs_6976 0 0 1 0 1 PSMA4 chr15:78832881 5'GT 78832881 Upstream 63bp
2385 chr20 138165 138165 1 + C A rs140500996 138165 + 138145 138185 41 GACCAAAAGCTTTGGCTGCACCTCTTCTGGAAAGCCTGGCC GACCAAAAGCTTTGGCTGCAACTCTTCTGGAAAGCCTGGCC Direct Gain 0 0.978930206677464 NA NA prediction 0.957860413354927 Functional Gain - DEFB127 ENSG00000088782 UTR5 Human protein_coding chr20:138165 chr20:138165 . . 0 21 hm6Am_associated_SNPs_6977 0 0 0 0 1 DEFB127 chr20:138234 5'GT 138234 Upstream 70bp
2386 chr10 60936660 60936660 1 + C A STAD 60936660 + 60936640 60936680 41 CCTCAACAGCCCCACCAGCCCCTGTGAGGAGGTGATCAAAA CCTCAACAGCCCCACCAGCCACTGTGAGGAGGTGATCAAAA Direct Gain 0 0.978922240140933 NA NA prediction 0.957844480281865 Functional Gain - PHYHIPL ENSG00000165443 CDS Human protein_coding chr10:60936660 chr10:60936660 nonsynonymous SNV 0.998 3 21 hm6Am_associated_SNPs_6979 0 0 0 0 1 PHYHIPL chr10:60936719 5'GT 60936719 Upstream 60bp
2387 chr2 98330052 98330052 1 + C A rs2276645 98330052 + 98330032 98330072 41 ATAGGTTAGTTTCAGACAAGCCTGCTTGCCGGAGCTCAGCA ATAGGTTAGTTTCAGACAAGACTGCTTGCCGGAGCTCAGCA Direct Gain 0 0.978706376799883 NA NA prediction 0.957412753599765 Functional Gain - ZAP70 ENSG00000115085 UTR5 Human protein_coding chr2:98330052 chr2:98330052 . . 0 21 hm6Am_associated_SNPs_7048 1 0 0 0 1 ZAP70 chr2:98330137 5'GT 98330137 Upstream 86bp
2388 chr21 17102674 17102674 1 + G A rs532377618 17102674 + 17102654 17102694 41 GGCGGAGGCGCGAGGAGCCGGGCGCCACCGCCGCCGCCGCC GGCGGAGGCGCGAGGAGCCGAGCGCCACCGCCGCCGCCGCC Direct Gain 0 0.978682694633299 NA NA prediction 0.957365389266599 Functional Gain - USP25 ENSG00000155313 UTR5 Human protein_coding chr21:17102674 chr21:17102674 . . 0 21 hm6Am_associated_SNPs_7056 0 0 1 0 1 USP25 chr21:17102757 5'GT 17102757 Upstream 84bp
2389 chrX 48755821 48755821 1 + G A UCEC 48755821 + 48755801 48755841 41 GCCCGTTGCGCTGCAGACCCGCTTGGCCAAGAGAGGCATCC GCCCGTTGCGCTGCAGACCCACTTGGCCAAGAGAGGCATCC Direct Gain 0 0.978673202414136 NA NA prediction 0.957346404828272 Functional Gain - PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48755821 chrX:48755821 nonsynonymous SNV 1.000 5 21 hm6Am_associated_SNPs_7059 0 0 1 0 1 PQBP1 chrX:48755859 5'GT 48755859 Upstream 39bp
2390 chr10 15139370 15139370 1 + G A rs117151080 15139370 + 15139350 15139390 41 CACTGGGCGCCGGTGCTGTTGCCTTCAGGTGACCACGGATT CACTGGGCGCCGGTGCTGTTACCTTCAGGTGACCACGGATT Direct Gain 0 0.978614977318087 NA NA prediction 0.957229954636175 Functional Gain - RPP38 ENSG00000152464 UTR5 Human protein_coding chr10:15139370 chr10:15139370 . . 0 21 hm6Am_associated_SNPs_7076 0 0 1 0 1 RPP38 chr10:15139408 5'GT 15139408 Upstream 39bp
2391 chr5 121297707 121297707 1 + G A rs573727666 121297707 + 121297687 121297727 41 TTCACGTGCAGGCAGCGGCGGATCATATTCCTTCATCTACC TTCACGTGCAGGCAGCGGCGAATCATATTCCTTCATCTACC Direct Gain 0 0.978609457337435 NA NA prediction 0.95721891467487 Functional Gain - SRFBP1 ENSG00000151304 UTR5 Human protein_coding chr5:121297707 chr5:121297707 . . 0 21 hm6Am_associated_SNPs_7079 0 0 1 0 1 SRFBP1 chr5:121297763 5'GT 121297763 Upstream 57bp
2392 chr14 37127061 37127061 1 + T A rs188648745 37127061 + 37127041 37127081 41 CTCCGTGCGCTTGCGGCTTCTCCTTGGGCTAGCGCGTCCGC CTCCGTGCGCTTGCGGCTTCACCTTGGGCTAGCGCGTCCGC Direct Gain 0 0.978546197240869 NA NA prediction 0.957092394481738 Functional Gain - PAX9 ENSG00000258661 ncRNA_intronic Human antisense chr14:37127061 chr14:37127061 . . 0 21 hm6Am_associated_SNPs_7093 0 0 0 0 1 PAX9 chr14:37127105 5'GT 37127105 Upstream 45bp
2393 chr9 130487111 130487111 1 - C T UCEC 130487111 - 130487091 130487131 41 ATGCGCGTGTTGGCGCCCTCGTCCTGAGGGCTCAGCGCCAG ATGCGCGTGTTGGCGCCCTCATCCTGAGGGCTCAGCGCCAG Direct Gain 0 0.978518625174438 NA NA prediction 0.957037250348875 Functional Gain - TTC16 ENSG00000167094 CDS Human other chr9:130487111 chr9:130487111 synonymous SNV . 0 21 hm6Am_associated_SNPs_7103 0 0 0 0 1 TTC16 chr9:130487016 5'GT 130487016 Upstream 96bp
2394 chr1 171217691 171217691 1 + C A rs12720462 171217691 + 171217671 171217711 41 AGCACTGGCTCATACTGATTCATTTTGATCTCTGCTAATAC AGCACTGGCTCATACTGATTAATTTTGATCTCTGCTAATAC Direct Gain 0 0.978507629645283 NA NA prediction 0.957015259290566 Functional Gain - FMO1 ENSG00000231424 ncRNA_intronic Human antisense chr1:171217691 chr1:171217691 . . 0 21 hm6Am_associated_SNPs_7106 0 0 0 0 2 FMO1 chr1:171217753 5'GT 171217753 Upstream 63bp
2395 chr1 171217691 171217691 1 + C A rs12720462 171217691 + 171217671 171217711 41 AGCACTGGCTCATACTGATTCATTTTGATCTCTGCTAATAC AGCACTGGCTCATACTGATTAATTTTGATCTCTGCTAATAC Direct Gain 0 0.978507629645283 NA NA prediction 0.957015259290566 Functional Gain - FMO1 ENSG00000231424 ncRNA_intronic Human antisense chr1:171217691 chr1:171217691 . . 0 21 hm6Am_associated_SNPs_7106 0 0 0 0 2 FMO1 chr1:171217762 5'GT 171217762 Upstream 72bp
2396 chr6 46097838 46097838 1 + C A rs555464389 46097838 + 46097818 46097858 41 CGGCATCGCCCCTCTTCCTCCAGGTCCCCCTTCCCCGCAAC CGGCATCGCCCCTCTTCCTCAAGGTCCCCCTTCCCCGCAAC Direct Gain 0 0.978418354197359 NA NA prediction 0.956836708394718 Functional Gain - ENPP4 ENSG00000001561 UTR5 Human protein_coding chr6:46097838 chr6:46097838 . . 0 21 hm6Am_associated_SNPs_7131 0 0 1 0 1 ENPP4 chr6:46097926 5'GT 46097926 Upstream 89bp
2397 chr14 104029378 104029378 1 + C A rs2274268 104029378 + 104029358 104029398 41 GGAAGAAGACCTTTCTCCCCCCTCTCTGCCGCGCCTTCGCC GGAAGAAGACCTTTCTCCCCACTCTCTGCCGCGCCTTCGCC Direct Gain 0 0.978371371676195 NA NA prediction 0.956742743352389 Functional Gain - APOPT1 ENSG00000256053;ENSG00000256500 CDS Human other chr14:104029378 chr14:104029378 nonsynonymous SNV 0.000 0 21 hm6Am_associated_SNPs_7144 1 0 1 0 1 APOPT1 chr14:104029461 5'GT 104029461 Upstream 84bp
2398 chr5 61602303 61602303 1 + G A COAD 61602303 + 61602283 61602323 41 CTGCTCCAGATGAGGTGATGGCAACGGCCAACTTCGGCAAG CTGCTCCAGATGAGGTGATGACAACGGCCAACTTCGGCAAG Direct Gain 0 0.978299804738288 NA NA prediction 0.956599609476576 Functional Gain - KIF2A ENSG00000068796 CDS Human protein_coding chr5:61602303 chr5:61602303 nonsynonymous SNV 1.000 0 21 hm6Am_associated_SNPs_7167 0 0 1 0 1 KIF2A chr5:61602363 5'GT 61602363 Upstream 61bp
2399 chr19 45430250 45430250 1 + G A rs201373658 45430250 + 45430230 45430270 41 GCCATGAGGCTCTTCCTGTCGCTCCCGGTCCTGGTGGTGGT GCCATGAGGCTCTTCCTGTCACTCCCGGTCCTGGTGGTGGT Direct Gain 0 0.978276650020751 NA NA prediction 0.956553300041501 Functional Gain - APOC1P1 ENSG00000214855 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:45430250 chr19:45430250 . . 0 21 hm6Am_associated_SNPs_7174 0 0 0 0 2 APOC1P1 chr19:45430213 3'AG 45430213 Downstream 38bp
2400 chr19 45430250 45430250 1 + G A rs201373658 45430250 + 45430230 45430270 41 GCCATGAGGCTCTTCCTGTCGCTCCCGGTCCTGGTGGTGGT GCCATGAGGCTCTTCCTGTCACTCCCGGTCCTGGTGGTGGT Direct Gain 0 0.978276650020751 NA NA prediction 0.956553300041501 Functional Gain - APOC1P1 ENSG00000214855 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:45430250 chr19:45430250 . . 0 21 hm6Am_associated_SNPs_7174 0 0 0 0 2 APOC1P1 chr19:45430290 5'GT 45430290 Upstream 41bp
2401 chr13 103451843 103451843 1 + G A rs12872442 103451843 + 103451823 103451863 41 CGGGTTCCGCCGCGGCCGCAGCGACCCGACCCCACCCGACA CGGGTTCCGCCGCGGCCGCAACGACCCGACCCCACCCGACA Direct Gain 0 0.978233079742035 NA NA prediction 0.95646615948407 Functional Gain - BIVM ENSG00000134897 UTR5 Human protein_coding chr13:103451843 chr13:103451843 . . 0 21 hm6Am_associated_SNPs_7188 0 0 0 0 1 BIVM chr13:103451871 5'GT 103451871 Upstream 29bp
2402 chr17 42977124 42977124 1 + G A rs148582322 42977124 + 42977104 42977144 41 GGCGTGGTCTGCGCGGGGTTGCCCTCCTGTTCTGGTTTATC GGCGTGGTCTGCGCGGGGTTACCCTCCTGTTCTGGTTTATC Direct Gain 0 0.978209993139822 NA NA prediction 0.956419986279644 Functional Gain - CCDC103 ENSG00000167131 UTR5 Human other chr17:42977124 chr17:42977124 . . 0 21 hm6Am_associated_SNPs_7194 1 0 0 0 2 CCDC103 chr17:42977197 5'GT 42977197 Upstream 74bp
2403 chr17 42977124 42977124 1 + G A rs148582322 42977124 + 42977104 42977144 41 GGCGTGGTCTGCGCGGGGTTGCCCTCCTGTTCTGGTTTATC GGCGTGGTCTGCGCGGGGTTACCCTCCTGTTCTGGTTTATC Direct Gain 0 0.978209993139822 NA NA prediction 0.956419986279644 Functional Gain - CCDC103 ENSG00000167131 UTR5 Human other chr17:42977124 chr17:42977124 . . 0 21 hm6Am_associated_SNPs_7194 1 0 0 0 2 CCDC103 chr17:42977211 5'GT 42977211 Upstream 88bp
2404 chr2 177134382 177134382 1 + G A COAD 177134382 + 177134362 177134402 41 CTCTAGTGGCGGAAGCCTTCGTCTCCCAGATTGCAGGTAGC CTCTAGTGGCGGAAGCCTTCATCTCCCAGATTGCAGGTAGC Direct Gain 0 0.97820527162889 NA NA prediction 0.956410543257779 Functional Gain - MTX2 ENSG00000128654 CDS Human protein_coding chr2:177134382 chr2:177134382 nonsynonymous SNV 1.000 0 21 hm6Am_associated_SNPs_7195 0 0 1 0 1 MTX2 chr2:177134397 5'GT 177134397 Upstream 16bp
2405 chr6 43484844 43484844 1 + G A rs2231756 43484844 + 43484824 43484864 41 TCTAGTCTCGTGGAGAGATTGAAGATGGCGGCTTCTCAGGC TCTAGTCTCGTGGAGAGATTAAAGATGGCGGCTTCTCAGGC Direct Gain 0 0.978204648474095 NA NA prediction 0.95640929694819 Functional Gain - POLR1C ENSG00000171453 UTR5 Human protein_coding chr6:43484844 chr6:43484844 . . 0 21 hm6Am_associated_SNPs_7197 2 0 1 0 1 POLR1C chr6:43484916 5'GT 43484916 Upstream 73bp
2406 chr1 7831352 7831352 1 + C A rs72853889 7831352 + 7831332 7831372 41 GACGTCTTTGCCCCGCGCCGCGCCGTCCCACCCATCTCCCT GACGTCTTTGCCCCGCGCCGAGCCGTCCCACCCATCTCCCT Direct Gain 0 0.978178513829621 NA NA prediction 0.956357027659241 Functional Gain - VAMP3 ENSG00000049245 UTR5 Human protein_coding chr1:7831352 chr1:7831352 . . 0 21 hm6Am_associated_SNPs_7203 0 0 0 0 1 VAMP3 chr1:7831445 5'GT 7831445 Upstream 94bp
2407 chr2 74648929 74648929 1 + G A rs567729038 74648929 + 74648909 74648949 41 AACCAGGAGTCAGGCGAGCCGATCTGGGGCTGCAGGTGTTA AACCAGGAGTCAGGCGAGCCAATCTGGGGCTGCAGGTGTTA Direct Gain 0 0.978173750640508 NA NA prediction 0.956347501281016 Functional Gain - WDR54 ENSG00000005448 CDS Human protein_coding chr2:74648929 chr2:74648929 nonsynonymous SNV 0.000 0 21 hm6Am_associated_SNPs_7207 0 0 1 0 1 WDR54 chr2:74648943 5'GT 74648943 Upstream 15bp
2408 chr11 65479727 65479727 1 + G A rs186911544 65479727 + 65479707 65479747 41 AGGGGCCGGAAGTGGCAGTGGAGGGAGGGAAGATGGCGGAG AGGGGCCGGAAGTGGCAGTGAAGGGAGGGAAGATGGCGGAG Direct Gain 0 0.978163356401447 NA NA prediction 0.956326712802894 Functional Gain - KAT5 ENSG00000172977 UTR5 Human protein_coding chr11:65479727 chr11:65479727 . . 0 21 hm6Am_associated_SNPs_7211 0 0 1 0 1 KAT5 chr11:65479750 5'GT 65479750 Upstream 24bp
2409 chr19 57901422 57901422 1 + G A rs75599624 57901422 + 57901402 57901442 41 GTCCTTGTCTTGCCTTTGTCGCTCCCGCCCCGCTCTTCCCT GTCCTTGTCTTGCCTTTGTCACTCCCGCCCCGCTCTTCCCT Direct Gain 0 0.978162299234178 NA NA prediction 0.956324598468356 Functional Gain - ZNF548 ENSG00000188785;ENSG00000269533 UTR5 Human other chr19:57901422 chr19:57901422 . . 0 21 hm6Am_associated_SNPs_7212 0 0 1 0 1 ZNF548 chr19:57901482 5'GT 57901482 Upstream 61bp
2410 chr16 89238216 89238216 1 + G A rs112120808 89238216 + 89238196 89238236 41 TCGGGTCGCGGGTGCACTCCGGCCCGGCTCCCGCCTCGGCC TCGGGTCGCGGGTGCACTCCAGCCCGGCTCCCGCCTCGGCC Direct Gain 0 0.978148765596236 NA NA prediction 0.956297531192473 Functional Gain - CDH15 ENSG00000129910 UTR5 Human protein_coding chr16:89238216 chr16:89238216 . . 0 21 hm6Am_associated_SNPs_7215 0 0 0 0 1 CDH15 chr16:89238281 5'GT 89238281 Upstream 66bp
2411 chr8 56792581 56792581 1 + G A rs532999958 56792581 + 56792561 56792601 41 CCTCCCCATACGCAGGTCCTGCTGGGCCGCCCCGTCGCGCC CCTCCCCATACGCAGGTCCTACTGGGCCGCCCCGTCGCGCC Direct Gain 0 0.978074959184339 NA NA prediction 0.956149918368677 Functional Gain - LYN ENSG00000254087 UTR5 Human protein_coding chr8:56792581 chr8:56792581 . . 0 21 hm6Am_associated_SNPs_7238 0 0 0 0 1 LYN chr8:56792662 5'GT 56792662 Upstream 82bp
2412 chr15 25200114 25200114 1 + G A ACC 25200114 + 25200094 25200134 41 GGATGTGTGCGAAGCCTGCCGCTGCTGCAGCGAGTCTGGCG GGATGTGTGCGAAGCCTGCCACTGCTGCAGCGAGTCTGGCG Direct Gain 0 0.978060964090279 NA NA prediction 0.956121928180559 Functional Gain - SNHG14 ENSG00000128739 UTR5 Human other chr15:25200114 chr15:25200114 . . 0 21 hm6Am_associated_SNPs_7241 0 0 0 0 1 SNURF chr15:25200209 5'GT 25200209 Upstream 96bp
2413 chr18 34409081 34409081 1 + C A rs370787050 34409081 + 34409061 34409101 41 GGCGGCCCAGGCGCGACGCCCCGAGTGGCGGTTGTTTCAAG GGCGGCCCAGGCGCGACGCCACGAGTGGCGGTTGTTTCAAG Direct Gain 0 0.978059240597807 NA NA prediction 0.956118481195615 Functional Gain - KIAA1328;TPGS2 ENSG00000134779;ENSG00000150477 UTR5 Human protein_coding chr18:34409081 chr18:34409081 . . 0 21 hm6Am_associated_SNPs_7242 0 0 0 0 1 KIAA1328 chr18:34409159 5'GT 34409159 Upstream 79bp
2414 chr1 11539349 11539349 1 + C A rs571148583 11539349 + 11539329 11539369 41 GAGGAGACGAGTCTGCGCAGCGTGGTGGCCGCCGCCCCCCG GAGGAGACGAGTCTGCGCAGAGTGGTGGCCGCCGCCCCCCG Direct Gain 0 0.977767888709335 NA NA prediction 0.955535777418669 Functional Gain - DISP3 ENSG00000204624 UTR5 Human protein_coding chr1:11539349 chr1:11539349 . . 0 21 hm6Am_associated_SNPs_7325 0 0 0 0 1 DISP3 chr1:11539429 5'GT 11539429 Upstream 81bp
2415 chr2 65283581 65283581 1 + C A rs77469505 65283581 + 65283561 65283601 41 CGGTTGGAGGGCCGCAGTTGCAGTCAGGGTCCGCCAGCTCG CGGTTGGAGGGCCGCAGTTGAAGTCAGGGTCCGCCAGCTCG Direct Gain 0 0.977686957337793 NA NA prediction 0.955373914675586 Functional Gain - CEP68 ENSG00000011523 UTR5 Human protein_coding chr2:65283581 chr2:65283581 . . 0 21 hm6Am_associated_SNPs_7349 0 0 1 0 2 CEP68 chr2:65283658 5'GT 65283658 Upstream 78bp
2416 chr2 65283581 65283581 1 + C A rs77469505 65283581 + 65283561 65283601 41 CGGTTGGAGGGCCGCAGTTGCAGTCAGGGTCCGCCAGCTCG CGGTTGGAGGGCCGCAGTTGAAGTCAGGGTCCGCCAGCTCG Direct Gain 0 0.977686957337793 NA NA prediction 0.955373914675586 Functional Gain - CEP68 ENSG00000011523 UTR5 Human protein_coding chr2:65283581 chr2:65283581 . . 0 21 hm6Am_associated_SNPs_7349 0 0 1 0 2 CEP68 chr2:65283662 5'GT 65283662 Upstream 82bp
2417 chr15 52311561 52311561 1 + T A rs182123684 52311561 + 52311541 52311581 41 CCCCGCACTCTCTCGATGAGTCGGAGAAGTCCCGTGAGTGT CCCCGCACTCTCTCGATGAGACGGAGAAGTCCCGTGAGTGT Direct Gain 0 0.977661937653745 NA NA prediction 0.955323875307489 Functional Gain - MAPK6 ENSG00000069956 UTR5 Human protein_coding chr15:52311561 chr15:52311561 . . 0 21 hm6Am_associated_SNPs_7354 0 0 1 0 1 MAPK6 chr15:52311573 5'GT 52311573 Upstream 13bp
2418 chr1 155036303 155036303 1 - C T ESCA 155036303 - 155036283 155036323 41 CCGCAGCAGGGGCAGCAGCCGCATCGCCCCCGAGGTCCGGT CCGCAGCAGGGGCAGCAGCCACATCGCCCCCGAGGTCCGGT Direct Gain 0 0.977629910088811 NA NA prediction 0.955259820177621 Functional Gain - EFNA4 ENSG00000143590;ENSG00000243364;ENSG00000251246 CDS Human other chr1:155036303 chr1:155036303 nonsynonymous SNV 1.000 4 21 hm6Am_associated_SNPs_7361 0 0 0 0 1 DCST1-AS1 chr1:155036233 5'GT 155036233 Upstream 71bp
2419 chr2 150187152 150187152 1 + G A rs143726133 150187152 + 150187132 150187172 41 CAGCGGGCTGGCGGGGCGCCGCATTGCACACTCTGGGGGCG CAGCGGGCTGGCGGGGCGCCACATTGCACACTCTGGGGGCG Direct Gain 0 0.977465661671082 NA NA prediction 0.954931323342164 Functional Gain - LYPD6 ENSG00000187123 UTR5 Human protein_coding chr2:150187152 chr2:150187152 . . 0 21 hm6Am_associated_SNPs_7409 0 0 0 0 1 LYPD6 chr2:150187236 5'GT 150187236 Upstream 85bp
2420 chr10 122216804 122216804 1 + G A rs113828650 122216804 + 122216784 122216824 41 CAGCTGACGCCGCGGGAGCTGCTCCGGCCGCACCATGCGGG CAGCTGACGCCGCGGGAGCTACTCCGGCCGCACCATGCGGG Direct Gain 0 0.977451115184521 NA NA prediction 0.954902230369041 Functional Gain - PLPP4 ENSG00000203805 UTR5 Human protein_coding chr10:122216804 chr10:122216804 . . 0 21 hm6Am_associated_SNPs_7417 0 0 0 0 1 PLPP4 chr10:122216873 5'GT 122216873 Upstream 70bp
2421 chr3 53195400 53195400 1 + C A rs550252787 53195400 + 53195380 53195420 41 GCGCCGGGGAGCGGCGCCCCCGCCGCTGCCGCCGCGACCCT GCGCCGGGGAGCGGCGCCCCAGCCGCTGCCGCCGCGACCCT Direct Gain 0 0.977406716731332 NA NA prediction 0.954813433462664 Functional Gain - PRKCD ENSG00000163932 UTR5 Human protein_coding chr3:53195400 chr3:53195400 . . 0 21 hm6Am_associated_SNPs_7438 0 0 1 0 1 PRKCD chr3:53195444 5'GT 53195444 Upstream 45bp
2422 chr1 224544620 224544620 1 + G A rs530246814 224544620 + 224544600 224544640 41 AAGGAGCGGCGGCGACGGAGGAGGAGGATGGAGGCGGTGGT AAGGAGCGGCGGCGACGGAGAAGGAGGATGGAGGCGGTGGT Direct Gain 0 0.977373182355822 NA NA prediction 0.954746364711645 Functional Gain - CNIH4 ENSG00000143771 UTR5 Human protein_coding chr1:224544620 chr1:224544620 . . 0 21 hm6Am_associated_SNPs_7446 0 0 1 0 1 CNIH4 chr1:224544695 5'GT 224544695 Upstream 76bp
2423 chr1 153963264 153963264 1 + C A rs71626798 153963264 + 153963244 153963284 41 CGGCGGTGACGACCTACGCACACGAGAACATGCCTGTGAGT CGGCGGTGACGACCTACGCAAACGAGAACATGCCTGTGAGT Direct Gain 0 0.977358438121939 NA NA prediction 0.954716876243878 Functional Gain - RPS27 ENSG00000177954 UTR5 Human protein_coding chr1:153963264 chr1:153963264 . . 0 21 hm6Am_associated_SNPs_7449 0 0 1 0 1 RPS27 chr1:153963278 5'GT 153963278 Upstream 15bp
2424 chr16 31366561 31366561 1 + T A LAML 31366561 + 31366541 31366581 41 CAGGAGCTCAGAGCTCCACATCTGACCTTCTAGTCATGACC CAGGAGCTCAGAGCTCCACAACTGACCTTCTAGTCATGACC Direct Gain 0 0.977355560980536 NA NA prediction 0.954711121961072 Functional Gain - ITGAX ENSG00000140678 UTR5 Human protein_coding chr16:31366561 chr16:31366561 . . 0 21 hm6Am_associated_SNPs_7450 0 0 0 0 1 ITGAX chr16:31366612 5'GT 31366612 Upstream 52bp
2425 chr8 65494286 65494286 1 - C T TGCT 65494286 - 65494266 65494306 41 GAGGCAGCCGAGATGGCCTGGCCCTGGTTGAGGTAGGCGAC GAGGCAGCCGAGATGGCCTGACCCTGGTTGAGGTAGGCGAC Direct Gain 0 0.97734201800705 NA NA prediction 0.9546840360141 Functional Gain - BHLHE22 ENSG00000180828 CDS Human protein_coding chr8:65494286 chr8:65494286 synonymous SNV . 0 21 hm6Am_associated_SNPs_7456 0 0 0 0 1 BHLHE22 chr8:65494275 5'GT 65494275 Upstream 12bp
2426 chr13 33590414 33590414 1 + G A rs2516569 33590414 + 33590394 33590434 41 CCCTCGGCGCCCCTGCCCCCGCCCCCAGTGCCAGGGCGGAG CCCTCGGCGCCCCTGCCCCCACCCCCAGTGCCAGGGCGGAG Direct Gain 0 0.977292737295088 NA NA prediction 0.954585474590177 Functional Gain - KL ENSG00000133116 UTR5 Human protein_coding chr13:33590414 chr13:33590414 . . 0 21 hm6Am_associated_SNPs_7473 0 0 0 0 1 KL chr13:33590451 5'GT 33590451 Upstream 38bp
2427 chr20 18448124 18448124 1 + C A rs75004098 18448124 + 18448104 18448144 41 GGCTGCTCCGTGCATCTTTCCCCCCAGGCGTCAGGAACTGC GGCTGCTCCGTGCATCTTTCACCCCAGGCGTCAGGAACTGC Direct Gain 0 0.97722581282023 NA NA prediction 0.954451625640461 Functional Gain - POLR3F ENSG00000132664 UTR5 Human protein_coding chr20:18448124 chr20:18448124 . . 0 21 hm6Am_associated_SNPs_7499 0 0 1 0 1 POLR3F chr20:18448212 5'GT 18448212 Upstream 89bp
2428 chr12 56435929 56435929 1 + C A rs1131017 56435929 + 56435909 56435949 41 CCTGCCAGGCACCGTCTCCTCTCTCCGGTCCGTGCCTCCAA CCTGCCAGGCACCGTCTCCTATCTCCGGTCCGTGCCTCCAA Direct Gain 0 0.977045547594659 NA NA prediction 0.954091095189318 Functional Gain - RPS26 ENSG00000197728 UTR5 Human protein_coding chr12:56435929 chr12:56435929 . . 0 21 hm6Am_associated_SNPs_7552 0 1 1 0 1 RPS26 chr12:56435953 5'GT 56435953 Upstream 25bp
2429 chr17 45000543 45000543 1 + C A rs373192791 45000543 + 45000523 45000563 41 GCCAGAGCCGGAGCCGTGGCCTGCGGGGCCGGCGACATGGA GCCAGAGCCGGAGCCGTGGCATGCGGGGCCGGCGACATGGA Direct Gain 0 0.977021331731455 NA NA prediction 0.95404266346291 Functional Gain - GOSR2 ENSG00000108433;ENSG00000262633 UTR5 Human other chr17:45000543 chr17:45000543 . . 0 21 hm6Am_associated_SNPs_7567 0 0 1 0 1 GOSR2 chr17:45000587 5'GT 45000587 Upstream 45bp
2430 chr12 52463936 52463936 1 + C A rs191369984 52463936 + 52463916 52463956 41 AGTGGAACGCGGGCGCTCCTCCAGCTTCCGAGTCCAGCCAG AGTGGAACGCGGGCGCTCCTACAGCTTCCGAGTCCAGCCAG Direct Gain 0 0.976998141788512 NA NA prediction 0.953996283577024 Functional Gain - ATG101 ENSG00000123395 UTR5 Human protein_coding chr12:52463936 chr12:52463936 . . 0 21 hm6Am_associated_SNPs_7576 0 0 1 0 1 ATG101 chr12:52464026 5'GT 52464026 Upstream 91bp
2431 chr17 62075714 62075714 1 + C A rs559319938 62075714 + 62075694 62075734 41 CTCGGCGTCGCCAAGGCAACCGGCGCCAGCCATGGCCTCTG CTCGGCGTCGCCAAGGCAACAGGCGCCAGCCATGGCCTCTG Direct Gain 0 0.976962794358256 NA NA prediction 0.953925588716513 Functional Gain - PRR29-AS1 ENSG00000264954 ncRNA_exonic Human protein_coding chr17:62075714 chr17:62075714 . . 0 21 hm6Am_associated_SNPs_7581 0 0 0 0 1 PRR29 chr17:62075784 5'GT 62075784 Upstream 71bp
2432 chr6 36410801 36410801 1 + C A rs2273883 36410801 + 36410781 36410821 41 GCCGCTGCGGCACAGCCGGTCCCGGCTGCGGCTTCTGGCTG GCCGCTGCGGCACAGCCGGTACCGGCTGCGGCTTCTGGCTG Direct Gain 0 0.976808137415303 NA NA prediction 0.953616274830607 Functional Gain - KCTD20 ENSG00000112078 UTR5 Human protein_coding chr6:36410801 chr6:36410801 . . 0 21 hm6Am_associated_SNPs_7631 0 0 1 0 1 KCTD20 chr6:36410888 5'GT 36410888 Upstream 88bp
2433 chr19 55477775 55477775 1 + T A rs34844508 55477775 + 55477755 55477795 41 CGGCCGAGAGAGAAGCCTTATTAGAGCTTTCTCAACCTGCA CGGCCGAGAGAGAAGCCTTAATAGAGCTTTCTCAACCTGCA Direct Gain 0 0.976807110396084 NA NA prediction 0.953614220792168 Functional Gain - NLRP2 ENSG00000022556 UTR5 Human protein_coding chr19:55477775 chr19:55477775 . . 0 21 hm6Am_associated_SNPs_7633 0 0 0 0 1 NLRP2 chr19:55477835 5'GT 55477835 Upstream 61bp
2434 chr11 20385323 20385323 1 + C A rs182333117 20385323 + 20385303 20385343 41 CTGTCTCCGTCGCCTCCAACCCCCCCGGTCCGACCAGGGAA CTGTCTCCGTCGCCTCCAACACCCCCGGTCCGACCAGGGAA Direct Gain 0 0.976806796515118 NA NA prediction 0.953613593030235 Functional Gain - HTATIP2 ENSG00000109854 UTR5 Human protein_coding chr11:20385323 chr11:20385323 . . 0 21 hm6Am_associated_SNPs_7634 0 0 1 0 1 HTATIP2 chr11:20385344 5'GT 20385344 Upstream 22bp
2435 chr4 25378937 25378937 1 + G A rs557241122 25378937 + 25378917 25378957 41 GGGGAGAGGCCACTGGGGCCGTGTTAGTCTGCCGGTGGGGA GGGGAGAGGCCACTGGGGCCATGTTAGTCTGCCGGTGGGGA Direct Gain 0 0.976797381221373 NA NA prediction 0.953594762442747 Functional Gain - ANAPC4 ENSG00000053900 UTR5 Human protein_coding chr4:25378937 chr4:25378937 . . 0 21 hm6Am_associated_SNPs_7636 0 0 1 0 1 ANAPC4 chr4:25378966 5'GT 25378966 Upstream 30bp
2436 chr1 112938837 112938837 1 + G A rs116045594 112938837 + 112938817 112938857 41 GCTGAGGGGGCGGAGCCTCAGCCGCTGTGGATGGGGAGTGG GCTGAGGGGGCGGAGCCTCAACCGCTGTGGATGGGGAGTGG Direct Gain 0 0.976791377570048 NA NA prediction 0.953582755140096 Functional Gain - CTTNBP2NL ENSG00000143079 UTR5 Human protein_coding chr1:112938837 chr1:112938837 . . 0 21 hm6Am_associated_SNPs_7641 0 0 0 0 1 CTTNBP2NL chr1:112938894 5'GT 112938894 Upstream 58bp
2437 chr20 52824573 52824573 1 + G A rs540806981 52824573 + 52824553 52824593 41 TCTAGGCCGACCGGGAGCGAGAGAACGCTCGGGGGCGAAGC TCTAGGCCGACCGGGAGCGAAAGAACGCTCGGGGGCGAAGC Direct Gain 0 0.976781744296927 NA NA prediction 0.953563488593854 Functional Gain - PFDN4 ENSG00000101132 UTR5 Human protein_coding chr20:52824573 chr20:52824573 . . 0 21 hm6Am_associated_SNPs_7645 0 0 0 0 1 PFDN4 chr20:52824663 5'GT 52824663 Upstream 91bp
2438 chr10 25305542 25305542 1 + T A rs41279888 25305542 + 25305522 25305562 41 AGGCCGCTCGGGGAAGGGCGTGGAGCGGAGGCACGCTGGCC AGGCCGCTCGGGGAAGGGCGAGGAGCGGAGGCACGCTGGCC Direct Gain 0 0.976778238986955 NA NA prediction 0.953556477973909 Functional Gain - THNSL1 ENSG00000151023;ENSG00000185875 upstream Human protein_coding chr10:25305542 chr10:25305542 . . 0 21 hm6Am_associated_SNPs_7646 0 0 0 0 1 THNSL1 chr10:25305621 5'GT 25305621 Upstream 80bp
2439 chr14 23564729 23564729 1 + G A rs146793604 23564729 + 23564709 23564749 41 AGTGCGTGGGCTGCCGGGCTGGCCCAGCTTAGGGTTTTCAG AGTGCGTGGGCTGCCGGGCTAGCCCAGCTTAGGGTTTTCAG Direct Gain 0 0.976729508691234 NA NA prediction 0.953459017382467 Functional Gain - ACIN1;C14orf119 ENSG00000100813;ENSG00000179933 UTR5 Human protein_coding chr14:23564729 chr14:23564729 . . 0 21 hm6Am_associated_SNPs_7660 0 0 1 0 1 C14orf119 chr14:23564828 5'GT 23564828 Upstream 100bp
2440 chr4 41259182 41259182 1 + G A rs199550545 41259182 + 41259162 41259202 41 CGTCTCTGGCCCCCTCCCCCGCGAGCGCCGAGGCGGGGGCG CGTCTCTGGCCCCCTCCCCCACGAGCGCCGAGGCGGGGGCG Direct Gain 0 0.976705773875444 NA NA prediction 0.953411547750888 Functional Gain - UCHL1 ENSG00000154277 intronic Human protein_coding chr4:41259182 chr4:41259182 . . 0 21 hm6Am_associated_SNPs_7672 0 0 1 0 1 UCHL1 chr4:41259132 3'AG 41259132 Downstream 51bp
2441 chr1 32687573 32687573 1 + C A LUAD 32687573 + 32687553 32687593 41 GCCCGCTTCAGCAGCGGCTGCGTGCCACCCCACAGAGCGGC GCCCGCTTCAGCAGCGGCTGAGTGCCACCCCACAGAGCGGC Direct Gain 0 0.976668302574186 NA NA prediction 0.953336605148372 Functional Gain - TMEM234 ENSG00000160055 CDS Human protein_coding chr1:32687573 chr1:32687573 synonymous SNV . 0 21 hm6Am_associated_SNPs_7688 0 0 0 0 1 EIF3I chr1:32687633 5'GT 32687633 Upstream 61bp
2442 chr17 56769999 56769999 1 + C A UCEC 56769999 + 56769979 56770019 41 CTCCGGGGTTAGCAGGTGAGCCTGCGATGCGCGGGAAGACG CTCCGGGGTTAGCAGGTGAGACTGCGATGCGCGGGAAGACG Direct Gain 0 0.976603199061114 NA NA prediction 0.953206398122227 Functional Gain - RAD51C ENSG00000108384 UTR5 Human protein_coding chr17:56769999 chr17:56769999 . . 0 21 hm6Am_associated_SNPs_7700 0 0 1 0 1 RAD51C chr17:56770046 5'GT 56770046 Upstream 48bp
2443 chr1 62208151 62208151 1 + C A rs112613776 62208151 + 62208131 62208171 41 CGCGGTCACCCTGGGCCTCTCACTTCCGCCCAGGTGAGGCA CGCGGTCACCCTGGGCCTCTAACTTCCGCCCAGGTGAGGCA Direct Gain 0 0.976591386549673 NA NA prediction 0.953182773099347 Functional Gain - PATJ ENSG00000132849 UTR5 Human protein_coding chr1:62208151 chr1:62208151 . . 0 21 hm6Am_associated_SNPs_7703 0 0 1 0 1 PATJ chr1:62208227 5'GT 62208227 Upstream 77bp
2444 chr16 47495300 47495300 1 + G A rs141733590 47495300 + 47495280 47495320 41 CTCACGGCAGAAGTGAGCTGGAAGGTCTTGGAGCGAAGAGC CTCACGGCAGAAGTGAGCTGAAAGGTCTTGGAGCGAAGAGC Direct Gain 0 0.976589594959495 NA NA prediction 0.953179189918991 Functional Gain - PHKB ENSG00000102893 CDS Human protein_coding chr16:47495300 chr16:47495300 stopgain 1.000 0 21 hm6Am_associated_SNPs_7706 0 0 1 0 1 PHKB chr16:47495337 5'GT 47495337 Upstream 38bp
2445 chr12 116997195 116997195 1 + G A rs10850665 116997195 + 116997175 116997215 41 TCTCTGCCTCCGCAAGGCTCGCAGCCACCTCTCGGGAGTGC TCTCTGCCTCCGCAAGGCTCACAGCCACCTCTCGGGAGTGC Direct Gain 0 0.976588783297212 NA NA prediction 0.953177566594424 Functional Gain - MAP1LC3B2 ENSG00000171471 UTR5 Human other chr12:116997195 chr12:116997195 . . 0 21 hm6Am_associated_SNPs_7707 0 0 0 0 1 MAP1LC3B2 chr12:116997238 5'GT 116997238 Upstream 44bp
2446 chr15 78441744 78441744 1 + C A rs201115044 78441744 + 78441724 78441764 41 TGCGGAGCCAGGAGGGGAAGCGATGGCTGGGCCCGCGTGGA TGCGGAGCCAGGAGGGGAAGAGATGGCTGGGCCCGCGTGGA Direct Gain 0 0.97656365008066 NA NA prediction 0.953127300161319 Functional Gain - IDH3A ENSG00000166411 UTR5 Human protein_coding chr15:78441744 chr15:78441744 . . 0 21 hm6Am_associated_SNPs_7712 0 0 1 0 1 IDH3A chr15:78441772 5'GT 78441772 Upstream 29bp
2447 chr19 14693942 14693942 1 + G A UCEC 14693942 + 14693922 14693962 41 GCAGAGGTTGCCAAGCCCTGGCTGCCACTTGTCAGGTTCCC GCAGAGGTTGCCAAGCCCTGACTGCCACTTGTCAGGTTCCC Direct Gain 0 0.976500126982146 NA NA prediction 0.953000253964292 Functional Gain - CLEC17A ENSG00000187912 UTR5 Human protein_coding chr19:14693942 chr19:14693942 . . 0 21 hm6Am_associated_SNPs_7732 0 0 0 0 1 CLEC17A chr19:14694015 5'GT 14694015 Upstream 74bp
2448 chr2 174219657 174219657 1 + C A rs140629025 174219657 + 174219637 174219677 41 CGCGGCTGCTCCGCTCTCCCCGCTCCAAGCGCCGATCTGGG CGCGGCTGCTCCGCTCTCCCAGCTCCAAGCGCCGATCTGGG Direct Gain 0 0.97649738017416 NA NA prediction 0.95299476034832 Functional Gain - CDCA7 ENSG00000236391 ncRNA_intronic Human protein_coding chr2:174219657 chr2:174219657 . . 0 21 hm6Am_associated_SNPs_7734 0 0 1 0 1 CDCA7 chr2:174219712 5'GT 174219712 Upstream 56bp
2449 chr2 242089029 242089029 1 + C A rs36123792 242089029 + 242089009 242089049 41 TGCTAGGGACGCACCAAACACCCCTACGGCGCTTCGGAGGA TGCTAGGGACGCACCAAACAACCCTACGGCGCTTCGGAGGA Direct Gain 0 0.97647530745748 NA NA prediction 0.95295061491496 Functional Gain - PASK;PPP1R7 ENSG00000115685;ENSG00000115687 UTR5 Human protein_coding chr2:242089029 chr2:242089029 . . 0 21 hm6Am_associated_SNPs_7741 0 0 0 0 1 PPP1R7 chr2:242089123 5'GT 242089123 Upstream 95bp
2450 chr6 116892745 116892745 1 + G A LUSC 116892745 + 116892725 116892765 41 TGGGCAAGAGCAAGGGCCACGATGACAGATTACGGCGAGGA TGGGCAAGAGCAAGGGCCACAATGACAGATTACGGCGAGGA Direct Gain 0 0.976447611510815 NA NA prediction 0.95289522302163 Functional Gain - RWDD1 ENSG00000111832 UTR5 Human protein_coding chr6:116892745 chr6:116892745 . . 0 21 hm6Am_associated_SNPs_7750 0 0 1 0 1 RWDD1 chr6:116892818 5'GT 116892818 Upstream 74bp
2451 chr12 65672589 65672589 1 + G A STAD 65672589 + 65672569 65672609 41 CCCGCGCCCCCTCTCGCTCTGCCTCTCCCTCTGCCTCTGCC CCCGCGCCCCCTCTCGCTCTACCTCTCCCTCTGCCTCTGCC Direct Gain 0 0.976308715728575 NA NA prediction 0.952617431457149 Functional Gain - MSRB3 ENSG00000174099 CDS Human protein_coding chr12:65672589 chr12:65672589 nonsynonymous SNV 0.560 1 21 hm6Am_associated_SNPs_7796 0 0 1 0 1 MSRB3 chr12:65672645 5'GT 65672645 Upstream 57bp
2452 chr1 77747969 77747969 1 + C A UCEC 77747969 + 77747949 77747989 41 GCAGCCCGGGAGCCTCCCCGCTTGCGCCCCAAGGCACGCGC GCAGCCCGGGAGCCTCCCCGATTGCGCCCCAAGGCACGCGC Direct Gain 0 0.976210444404073 NA NA prediction 0.952420888808145 Functional Gain - AK5 ENSG00000154027 UTR5 Human protein_coding chr1:77747969 chr1:77747969 . . 0 21 hm6Am_associated_SNPs_7821 0 0 0 0 1 AK5 chr1:77748058 5'GT 77748058 Upstream 90bp
2453 chr3 38388331 38388331 1 + G A rs373383884 38388331 + 38388311 38388351 41 GCGTGGCGGACGGACGGACTGACGGACGCGCAGCCTTACCC GCGTGGCGGACGGACGGACTAACGGACGCGCAGCCTTACCC Direct Gain 0 0.976188126317511 NA NA prediction 0.952376252635023 Functional Gain - XYLB ENSG00000093217 UTR5 Human protein_coding chr3:38388331 chr3:38388331 . . 0 21 hm6Am_associated_SNPs_7828 0 0 1 0 1 XYLB chr3:38388416 5'GT 38388416 Upstream 86bp
2454 chr11 68452148 68452148 1 + G A rs530659299 68452148 + 68452128 68452168 41 CGGACCTGCCGCCCAGACCCGCCACCGCACCCGGACCCCGA CGGACCTGCCGCCCAGACCCACCACCGCACCCGGACCCCGA Direct Gain 0 0.976101336602715 NA NA prediction 0.95220267320543 Functional Gain - GAL ENSG00000069482 UTR5 Human protein_coding chr11:68452148 chr11:68452148 . . 0 21 hm6Am_associated_SNPs_7849 0 0 1 0 1 GAL chr11:68452200 5'GT 68452200 Upstream 53bp
2455 chr4 165953246 165953246 1 + G A rs536426179 165953246 + 165953226 165953266 41 CACAGCATCAGGCCTGAGCCGCCGGTCCAACTGCTCCAGGT CACAGCATCAGGCCTGAGCCACCGGTCCAACTGCTCCAGGT Direct Gain 0 0.976086388096198 NA NA prediction 0.952172776192396 Functional Gain - TRIM60 ENSG00000176979 UTR5 Human protein_coding chr4:165953246 chr4:165953246 . . 0 21 hm6Am_associated_SNPs_7852 0 0 0 0 1 TRIM60 chr4:165953264 5'GT 165953264 Upstream 19bp
2456 chr1 26758773 26758773 1 + G A rs6656196 26758773 + 26758753 26758793 41 GGTGACGGAAGGGGCGTGTCGCAGCGCCCAAAGATGACGTG GGTGACGGAAGGGGCGTGTCACAGCGCCCAAAGATGACGTG Direct Gain 0 0.976059253678394 NA NA prediction 0.952118507356789 Functional Gain - DHDDS ENSG00000117682 UTR5 Human protein_coding chr1:26758773 chr1:26758773 . . 0 21 hm6Am_associated_SNPs_7860 1 0 0 0 1 DHDDS chr1:26758867 5'GT 26758867 Upstream 95bp
2457 chr19 56152526 56152526 1 + G A rs565524951 56152526 + 56152506 56152546 41 GGACCTCGGCCCGTTCCTCCGGACCCGAGAGGCCGCCGCAC GGACCTCGGCCCGTTCCTCCAGACCCGAGAGGCCGCCGCAC Direct Gain 0 0.976050174427789 NA NA prediction 0.952100348855578 Functional Gain - ZNF580 ENSG00000171425;ENSG00000173581;ENSG00000213015 UTR5 Human other chr19:56152526 chr19:56152526 . . 0 21 hm6Am_associated_SNPs_7863 0 0 1 0 1 ZNF580 chr19:56152549 5'GT 56152549 Upstream 24bp
2458 chr3 25831624 25831624 1 + G A rs148981591 25831624 + 25831604 25831644 41 ACTGTGGAGAAGTGTCCGGGGTAGCCCCGTTACAGGTATCG ACTGTGGAGAAGTGTCCGGGATAGCCCCGTTACAGGTATCG Direct Gain 0 0.97602047575576 NA NA prediction 0.95204095151152 Functional Gain - OXSM ENSG00000151093 UTR5 Human protein_coding chr3:25831624 chr3:25831624 . . 0 21 hm6Am_associated_SNPs_7876 0 0 1 0 1 OXSM chr3:25831638 5'GT 25831638 Upstream 15bp
2459 chr9 137001251 137001251 1 + G A rs549392272 137001251 + 137001231 137001271 41 CTGCCGCCTTGTCGAGCTGAGTCCGCGCTCCCGCCCAGGCG CTGCCGCCTTGTCGAGCTGAATCCGCGCTCCCGCCCAGGCG Direct Gain 0 0.975990256569558 NA NA prediction 0.951980513139115 Functional Gain - WDR5 ENSG00000196363 UTR5 Human protein_coding chr9:137001251 chr9:137001251 . . 0 21 hm6Am_associated_SNPs_7883 0 0 1 0 1 WDR5 chr9:137001322 5'GT 137001322 Upstream 72bp
2460 chr15 51201077 51201077 1 + G A COAD 51201077 + 51201057 51201097 41 GCCAAGGCGTCCTTCTCCTCGAGGCTGGGCAGCCTTGTCCG GCCAAGGCGTCCTTCTCCTCAAGGCTGGGCAGCCTTGTCCG Direct Gain 0 0.975973694740699 NA NA prediction 0.951947389481399 Functional Gain - AP4E1 ENSG00000081014 CDS Human protein_coding chr15:51201077 chr15:51201077 synonymous SNV . 0 21 hm6Am_associated_SNPs_7887 0 0 1 0 1 AP4E1 chr15:51201125 5'GT 51201125 Upstream 49bp
2461 chr2 86426566 86426566 1 + G A rs41291149 86426566 + 86426546 86426586 41 CTTTCCCTTCATTCTCTTTTGCTCTTGTGCTTTTAAACCCA CTTTCCCTTCATTCTCTTTTACTCTTGTGCTTTTAAACCCA Direct Gain 0 0.975929667408985 NA NA prediction 0.95185933481797 Functional Gain - MRPL35 ENSG00000132313 UTR5 Human protein_coding chr2:86426566 chr2:86426566 . . 0 21 hm6Am_associated_SNPs_7908 0 0 0 0 1 MRPL35 chr2:86426656 5'GT 86426656 Upstream 91bp
2462 chr2 139259602 139259602 1 + G A rs190016210 139259602 + 139259582 139259622 41 CCCCTGCTGCCACCACCGCAGCCTCGGGCTCCCAGGGCGGA CCCCTGCTGCCACCACCGCAACCTCGGGCTCCCAGGGCGGA Direct Gain 0 0.975873212761517 NA NA prediction 0.951746425523034 Functional Gain - SPOPL ENSG00000144228 UTR5 Human protein_coding chr2:139259602 chr2:139259602 . . 0 21 hm6Am_associated_SNPs_7926 0 0 1 0 1 SPOPL chr2:139259689 5'GT 139259689 Upstream 88bp
2463 chr14 103243946 103243946 1 + C A rs1051750 103243946 + 103243926 103243966 41 GGGCAGCCCGGGGAGCAGAACGCTGCGGACCGCGGCGGAGG GGGCAGCCCGGGGAGCAGAAAGCTGCGGACCGCGGCGGAGG Direct Gain 0 0.975868942687604 NA NA prediction 0.951737885375209 Functional Gain - TRAF3 ENSG00000131323 UTR5 Human protein_coding chr14:103243946 chr14:103243946 . . 0 21 hm6Am_associated_SNPs_7928 0 0 1 0 1 TRAF3 chr14:103244012 5'GT 103244012 Upstream 67bp
2464 chr4 20702148 20702148 1 + G A rs558872339 20702148 + 20702128 20702168 41 CGACCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAG CGACCGAGTGCCGGTCATAAACCCCCCCCGGTGGGGGGCAG Direct Gain 0 0.975824464802559 NA NA prediction 0.951648929605118 Functional Gain - PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702148 chr4:20702148 . . 0 21 hm6Am_associated_SNPs_7940 0 0 1 0 2 PACRGL chr4:20702201 5'GT 20702201 Upstream 54bp
2465 chr4 20702148 20702148 1 + G A rs558872339 20702148 + 20702128 20702168 41 CGACCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAG CGACCGAGTGCCGGTCATAAACCCCCCCCGGTGGGGGGCAG Direct Gain 0 0.975824464802559 NA NA prediction 0.951648929605118 Functional Gain - PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702148 chr4:20702148 . . 0 21 hm6Am_associated_SNPs_7940 0 0 1 0 2 PACRGL chr4:20702234 5'GT 20702234 Upstream 87bp
2466 chr3 109128965 109128965 1 + C A UCEC 109128965 + 109128945 109128985 41 CCTTATTTACCTCCCTTATCCTTCAGCTGGAGCTCTGCGAG CCTTATTTACCTCCCTTATCATTCAGCTGGAGCTCTGCGAG Direct Gain 0 0.97578253208976 NA NA prediction 0.951565064179521 Functional Gain - LINC01205 ENSG00000228980 ncRNA_exonic Human lincRNA chr3:109128965 chr3:109128965 . . 0 21 hm6Am_associated_SNPs_7961 0 0 0 0 1 LINC01205 chr3:109129054 5'GT 109129054 Upstream 90bp
2467 chr19 47104662 47104662 1 + C A rs564316220 47104662 + 47104642 47104682 41 GCCGCCGGAGGAACCTTGATCCCCGTGCTCCGGACACCCCG GCCGCCGGAGGAACCTTGATACCCGTGCTCCGGACACCCCG Direct Gain 0 0.975781105518737 NA NA prediction 0.951562211037473 Functional Gain - CALM3 ENSG00000160014 UTR5 Human protein_coding chr19:47104662 chr19:47104662 . . 0 21 hm6Am_associated_SNPs_7963 0 0 1 0 1 CALM3 chr19:47104694 5'GT 47104694 Upstream 33bp
2468 chr5 87564804 87564804 1 + G A rs187254968 87564804 + 87564784 87564824 41 GGTTGTGGGCTGGGGGCGGTGCTGACCTTGAGAGAGCGGAG GGTTGTGGGCTGGGGGCGGTACTGACCTTGAGAGAGCGGAG Direct Gain 0 0.97572106764705 NA NA prediction 0.9514421352941 Functional Gain - TMEM161B-AS1 ENSG00000247828 ncRNA_exonic Human antisense chr5:87564804 chr5:87564804 . . 0 21 hm6Am_associated_SNPs_7986 0 0 1 0 1 TMEM161B-AS1 chr5:87564844 5'GT 87564844 Upstream 41bp
2469 chr14 60716297 60716297 1 + C A rs528924735 60716297 + 60716277 60716317 41 CCGCTGCAGCGGTGACCCCTCCCCCGGCTGCCGCCGTCGCC CCGCTGCAGCGGTGACCCCTACCCCGGCTGCCGCCGTCGCC Direct Gain 0 0.975715972047528 NA NA prediction 0.951431944095056 Functional Gain - PPM1A ENSG00000100614 UTR5 Human protein_coding chr14:60716297 chr14:60716297 . . 0 21 hm6Am_associated_SNPs_7988 0 0 1 0 1 PPM1A chr14:60716395 5'GT 60716395 Upstream 99bp
2470 chr14 23299406 23299406 1 + G A UCEC 23299406 + 23299386 23299426 41 CTCCACACAGGCAGGGACTGGCTGCCAACCCCTCCGGCTAC CTCCACACAGGCAGGGACTGACTGCCAACCCCTCCGGCTAC Direct Gain 0 0.975620735762808 NA NA prediction 0.951241471525617 Functional Gain - MRPL52 ENSG00000172590 CDS Human protein_coding chr14:23299406 chr14:23299406 nonsynonymous SNV 0.894 2 21 hm6Am_associated_SNPs_8015 0 0 1 0 2 MRPL52 chr14:23299396 3'AG 23299396 Downstream 11bp
2471 chr14 23299406 23299406 1 + G A UCEC 23299406 + 23299386 23299426 41 CTCCACACAGGCAGGGACTGGCTGCCAACCCCTCCGGCTAC CTCCACACAGGCAGGGACTGACTGCCAACCCCTCCGGCTAC Direct Gain 0 0.975620735762808 NA NA prediction 0.951241471525617 Functional Gain - MRPL52 ENSG00000172590 CDS Human protein_coding chr14:23299406 chr14:23299406 nonsynonymous SNV 0.894 2 21 hm6Am_associated_SNPs_8015 0 0 1 0 2 MRPL52 chr14:23299463 5'GT 23299463 Upstream 58bp
2472 chr16 2880232 2880232 1 + T A rs201425177 2880232 + 2880212 2880252 41 CCTGTTCCCCTGGCGGCCCCTCGCTTCTTCCTTCTGGATGG CCTGTTCCCCTGGCGGCCCCACGCTTCTTCCTTCTGGATGG Direct Gain 0 0.975521430924493 NA NA prediction 0.951042861848985 Functional Gain - ZG16B ENSG00000162078 UTR5 Human protein_coding chr16:2880232 chr16:2880232 . . 0 21 hm6Am_associated_SNPs_8048 0 0 0 0 1 ZG16B chr16:2880329 5'GT 2880329 Upstream 98bp
2473 chr4 176987145 176987145 1 + G A rs76951994 176987145 + 176987125 176987165 41 GGGGAGGGCGGGGAGGGTCCGCGCGTTGGTGGTGCTCGCCT GGGGAGGGCGGGGAGGGTCCACGCGTTGGTGGTGCTCGCCT Direct Gain 0 0.975499296376407 NA NA prediction 0.950998592752814 Functional Gain - WDR17 ENSG00000150627 UTR5 Human protein_coding chr4:176987145 chr4:176987145 . . 0 21 hm6Am_associated_SNPs_8053 0 0 1 0 1 WDR17 chr4:176987230 5'GT 176987230 Upstream 86bp
2474 chr14 93260774 93260774 1 + C A rs558414439 93260774 + 93260754 93260794 41 GCCCAGGACGGCGGCTAGGCCGTAGTGCAGCCTCTCCGGAG GCCCAGGACGGCGGCTAGGCAGTAGTGCAGCCTCTCCGGAG Direct Gain 0 0.975442017957651 NA NA prediction 0.950884035915303 Functional Gain - GOLGA5 ENSG00000066455 UTR5 Human protein_coding chr14:93260774 chr14:93260774 . . 0 21 hm6Am_associated_SNPs_8075 0 0 1 0 1 GOLGA5 chr14:93260801 5'GT 93260801 Upstream 28bp
2475 chr13 21277487 21277487 1 + G A rs369111497 21277487 + 21277467 21277507 41 CACTGCACAAGTGACAAAATGTTTTCAGCTCCTGGAGGCGA CACTGCACAAGTGACAAAATATTTTCAGCTCCTGGAGGCGA Direct Gain 0 0.975411409634654 NA NA prediction 0.950822819269307 Functional Gain - IL17D ENSG00000172458 UTR5 Human protein_coding chr13:21277487 chr13:21277487 . . 0 21 hm6Am_associated_SNPs_8086 0 0 0 0 1 IL17D chr13:21277583 5'GT 21277583 Upstream 97bp
2476 chr12 27677295 27677295 1 + C A rs147297613 27677295 + 27677275 27677315 41 TGCCGGCGGCTCTCCACCCCCCAGGTAAGGGCGTTTTGCTC TGCCGGCGGCTCTCCACCCCACAGGTAAGGGCGTTTTGCTC Direct Gain 0 0.975403336944036 NA NA prediction 0.950806673888072 Functional Gain - PPFIBP1 ENSG00000110841 UTR5 Human protein_coding chr12:27677295 chr12:27677295 . . 0 21 hm6Am_associated_SNPs_8089 0 0 1 0 1 PPFIBP1 chr12:27677298 5'GT 27677298 Upstream 4bp
2477 chr19 16308785 16308785 1 + G A rs185553755 16308785 + 16308765 16308805 41 AACGCCCAGCAGTCCCCACCGTCGCTGCCGCCGCCACCGCC AACGCCCAGCAGTCCCCACCATCGCTGCCGCCGCCACCGCC Direct Gain 0 0.975282585074215 NA NA prediction 0.950565170148431 Functional Gain - AP1M1 ENSG00000072958 splicing Human protein_coding chr19:16308785 chr19:16308785 . . 0 21 hm6Am_associated_SNPs_8117 0 0 1 0 1 AP1M1 chr19:16308879 5'GT 16308879 Upstream 95bp
2478 chr22 18560780 18560780 1 + G A rs138787474 18560780 + 18560760 18560800 41 GGCTGCGGGGCTGGGCGAGCGCAAAGATGTCCGCGCCCGCT GGCTGCGGGGCTGGGCGAGCACAAAGATGTCCGCGCCCGCT Direct Gain 0 0.97528000722364 NA NA prediction 0.95056001444728 Functional Gain - PEX26 ENSG00000225335 ncRNA_exonic Human antisense chr22:18560780 chr22:18560780 . . 0 21 hm6Am_associated_SNPs_8118 0 0 1 0 1 PEX26 chr22:18560813 5'GT 18560813 Upstream 34bp
2479 chr16 14726833 14726833 1 + G A rs563033863 14726833 + 14726813 14726853 41 CCTCTGCTCCCGCGGGGTCTGTGCTGAGAATAATGGCCCGG CCTCTGCTCCCGCGGGGTCTATGCTGAGAATAATGGCCCGG Direct Gain 0 0.975199627721246 NA NA prediction 0.950399255442493 Functional Gain - BFAR ENSG00000103429 UTR5 Human protein_coding chr16:14726833 chr16:14726833 . . 0 21 hm6Am_associated_SNPs_8151 0 0 1 0 1 BFAR chr16:14726875 5'GT 14726875 Upstream 43bp
2480 chr17 16342347 16342347 1 + T A UCEC 16342347 + 16342327 16342367 41 GGCCTGGCGCACATAAGGTGTGACCTTTTCATTCCCGTTGT GGCCTGGCGCACATAAGGTGAGACCTTTTCATTCCCGTTGT Direct Gain 0 0.975136941993757 NA NA prediction 0.950273883987514 Functional Gain - LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342347 chr17:16342347 . . 0 21 hm6Am_associated_SNPs_8169 0 0 1 1 1 LRRC75A-AS1 chr17:16342374 5'GT 16342374 Upstream 28bp
2481 chr12 54333329 54333329 1 - C T LUAD 54333329 - 54333309 54333349 41 GAGAGAGCCCAGTGCTGGTAGCCTTCGACGGGGATGAGGGC GAGAGAGCCCAGTGCTGGTAACCTTCGACGGGGATGAGGGC Direct Gain 0 0.975093123084816 NA NA prediction 0.950186246169632 Functional Gain - HOXC13 ENSG00000123364 CDS Human protein_coding chr12:54333329 chr12:54333329 synonymous SNV . 0 21 hm6Am_associated_SNPs_8182 0 0 0 0 1 HOXC13 chr12:54333255 5'GT 54333255 Upstream 75bp
2482 chr16 67880834 67880834 1 + C A rs28670302 67880834 + 67880814 67880854 41 AGGGGGGAAGGGACAGTCGGCCGCAGACCGCGCTGGGTTGC AGGGGGGAAGGGACAGTCGGACGCAGACCGCGCTGGGTTGC Direct Gain 0 0.975054465803829 NA NA prediction 0.950108931607658 Functional Gain - NUTF2 ENSG00000102898 UTR5 Human protein_coding chr16:67880834 chr16:67880834 . . 0 21 hm6Am_associated_SNPs_8188 0 0 1 0 1 NUTF2 chr16:67880888 5'GT 67880888 Upstream 55bp
2483 chr8 99129548 99129548 1 + G A rs561129199 99129548 + 99129528 99129568 41 CTCCAGCGCGCTCTCCAGGAGCTTTGGCTCGGTGGGTACTG CTCCAGCGCGCTCTCCAGGAACTTTGGCTCGGTGGGTACTG Direct Gain 0 0.974983773571057 NA NA prediction 0.949967547142114 Functional Gain - POP1 ENSG00000104356 UTR5 Human protein_coding chr8:99129548 chr8:99129548 . . 0 21 hm6Am_associated_SNPs_8214 0 0 0 0 2 POP1 chr8:99129558 5'GT 99129558 Upstream 11bp
2484 chr8 99129548 99129548 1 + G A rs561129199 99129548 + 99129528 99129568 41 CTCCAGCGCGCTCTCCAGGAGCTTTGGCTCGGTGGGTACTG CTCCAGCGCGCTCTCCAGGAACTTTGGCTCGGTGGGTACTG Direct Gain 0 0.974983773571057 NA NA prediction 0.949967547142114 Functional Gain - POP1 ENSG00000104356 UTR5 Human protein_coding chr8:99129548 chr8:99129548 . . 0 21 hm6Am_associated_SNPs_8214 0 0 0 0 2 POP1 chr8:99129618 5'GT 99129618 Upstream 71bp
2485 chr22 24199110 24199110 1 + C A rs73879006 24199110 + 24199090 24199130 41 GCGGCAACCCGAGACCGGTTCTCCTACCCGCATTCCGCCAA GCGGCAACCCGAGACCGGTTATCCTACCCGCATTCCGCCAA Direct Gain 0 0.974981845043879 NA NA prediction 0.949963690087758 Functional Gain - SLC2A11 ENSG00000272973 ncRNA_exonic Human protein_coding chr22:24199110 chr22:24199110 . . 0 21 hm6Am_associated_SNPs_8216 0 0 0 0 1 SLC2A11 chr22:24199178 5'GT 24199178 Upstream 69bp
2486 chr16 67679116 67679116 1 + G A rs183644366 67679116 + 67679096 67679136 41 GTCCTCTGCTGTTTCCCGCCGGAGCTCGTTGGGCCTCCCCG GTCCTCTGCTGTTTCCCGCCAGAGCTCGTTGGGCCTCCCCG Direct Gain 0 0.974830528153646 NA NA prediction 0.949661056307292 Functional Gain - CARMIL2 ENSG00000159753 UTR5 Human protein_coding chr16:67679116 chr16:67679116 . . 0 21 hm6Am_associated_SNPs_8260 0 0 0 0 1 CARMIL2 chr16:67679189 5'GT 67679189 Upstream 74bp
2487 chr5 122425138 122425138 1 + G A rs151060786 122425138 + 122425118 122425158 41 CTCAGGGGCATGTAGCGCACGCAGGGCGCACACTCTCGCGC CTCAGGGGCATGTAGCGCACACAGGGCGCACACTCTCGCGC Direct Gain 0 0.974763049095641 NA NA prediction 0.949526098191282 Functional Gain - LOC105379152 ENSG00000223652 ncRNA_intronic Human antisense chr5:122425138 chr5:122425138 . . 0 21 hm6Am_associated_SNPs_8278 0 0 0 0 1 LOC105379152 chr5:122425214 5'GT 122425214 Upstream 77bp
2488 chr7 128379464 128379464 1 + T A rs339056 128379464 + 128379444 128379484 41 GCGGCGGCCACGGCATCCTGTGCTGTGGGGGCTACGAGGAA GCGGCGGCCACGGCATCCTGAGCTGTGGGGGCTACGAGGAA Direct Gain 0 0.974755050570537 NA NA prediction 0.949510101141074 Functional Gain - CALU ENSG00000128595 UTR5 Human protein_coding chr7:128379464 chr7:128379464 . . 0 21 hm6Am_associated_SNPs_8280 0 0 1 0 1 CALU chr7:128379486 5'GT 128379486 Upstream 23bp
2489 chr5 115177764 115177764 1 + C A COAD 115177764 + 115177744 115177784 41 GCGATCCTAATCTTCAACAACCACGGGAAGCCGCGGCTCTC GCGATCCTAATCTTCAACAAACACGGGAAGCCGCGGCTCTC Direct Gain 0 0.974695242184287 NA NA prediction 0.949390484368573 Functional Gain - AP3S1 ENSG00000177879 CDS Human protein_coding chr5:115177764 chr5:115177764 nonsynonymous SNV 1.000 3 21 hm6Am_associated_SNPs_8293 0 0 1 0 1 AP3S1 chr5:115177803 5'GT 115177803 Upstream 40bp
2490 chr7 150413700 150413700 1 + C A rs74519857 150413700 + 150413680 150413720 41 CGTGTGCCGAGAGGAAACAGCCTTCTGCACTCACAGCCGAA CGTGTGCCGAGAGGAAACAGACTTCTGCACTCACAGCCGAA Direct Gain 0 0.974647057628715 NA NA prediction 0.94929411525743 Functional Gain - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 UTR5 Human protein_coding chr7:150413700 chr7:150413700 . . 0 21 hm6Am_associated_SNPs_8318 0 0 0 0 1 GIMAP1;GIMAP1-GIMAP5 chr7:150413778 5'GT 150413778 Upstream 79bp
2491 chr2 170336042 170336042 1 + C A rs111636835 170336042 + 170336022 170336062 41 CTGCACGGCTGTGGAGAGATCCTGCCACGGGCCTTGTTCAC CTGCACGGCTGTGGAGAGATACTGCCACGGGCCTTGTTCAC Direct Gain 0 0.974626192278947 NA NA prediction 0.949252384557894 Functional Gain - BBS5 ENSG00000163093;ENSG00000251569 UTR5 Human other chr2:170336042 chr2:170336042 . . 0 21 hm6Am_associated_SNPs_8324 0 0 1 0 1 BBS5 chr2:170336122 5'GT 170336122 Upstream 81bp
2492 chr9 86595731 86595731 1 + C A rs296890 86595731 + 86595711 86595751 41 TAAAAAAGGAACTGGGAGCGCGCCGCGGCGGTTCCTGTCCT TAAAAAAGGAACTGGGAGCGAGCCGCGGCGGTTCCTGTCCT Direct Gain 0 0.974609152084366 NA NA prediction 0.949218304168732 Functional Gain - RMI1 ENSG00000178966 UTR5 Human protein_coding chr9:86595731 chr9:86595731 . . 0 21 hm6Am_associated_SNPs_8329 0 0 1 0 1 RMI1 chr9:86595806 5'GT 86595806 Upstream 76bp
2493 chr4 71859575 71859575 1 + G A STAD 71859575 + 71859555 71859595 41 GGCCACCCCGCCCAAGAGAAGCTGCCCGTCTTTCTCAGCCA GGCCACCCCGCCCAAGAGAAACTGCCCGTCTTTCTCAGCCA Direct Gain 0 0.974559697036329 NA NA prediction 0.949119394072659 Functional Gain - DCK ENSG00000156136 CDS Human protein_coding chr4:71859575 chr4:71859575 nonsynonymous SNV 0.734 1 21 hm6Am_associated_SNPs_8348 0 0 1 0 1 DCK chr4:71859643 5'GT 71859643 Upstream 69bp
2494 chr7 120590914 120590914 1 + C A rs183695656 120590914 + 120590894 120590934 41 GCGAGTGACACAAATAAACCCCTGGACCCCCTTGTTCCCTC GCGAGTGACACAAATAAACCACTGGACCCCCTTGTTCCCTC Direct Gain 0 0.974487721380856 NA NA prediction 0.948975442761712 Functional Gain - ING3 ENSG00000071243 UTR5 Human protein_coding chr7:120590914 chr7:120590914 . . 0 21 hm6Am_associated_SNPs_8378 0 0 1 0 1 ING3 chr7:120590978 5'GT 120590978 Upstream 65bp
2495 chr1 67390755 67390755 1 + G A UCEC 67390755 + 67390735 67390775 41 TGGCGGCAGCAGCGAAGGTGGCGGCGGCAGCAGCGGCAGCG TGGCGGCAGCAGCGAAGGTGACGGCGGCAGCAGCGGCAGCG Direct Gain 0 0.974414493189521 NA NA prediction 0.948828986379041 Functional Gain - MIER1 ENSG00000198160 CDS Human protein_coding chr1:67390755 chr1:67390755 nonsynonymous SNV 0.997 3 21 hm6Am_associated_SNPs_8398 0 0 1 0 1 MIER1 chr1:67390778 5'GT 67390778 Upstream 24bp
2496 chr8 21946752 21946752 1 + G A rs576728720 21946752 + 21946732 21946772 41 CTTTCGCCCGGGAGCCGGGGGCCGGGCGCCATCATGCTGAG CTTTCGCCCGGGAGCCGGGGACCGGGCGCCATCATGCTGAG Direct Gain 0 0.974400555702273 NA NA prediction 0.948801111404546 Functional Gain - FAM160B2 ENSG00000158863 UTR5 Human protein_coding chr8:21946752 chr8:21946752 . . 0 21 hm6Am_associated_SNPs_8406 0 0 1 0 1 FAM160B2 chr8:21946809 5'GT 21946809 Upstream 58bp
2497 chr15 52311474 52311474 1 + G A rs111298920 52311474 + 52311454 52311494 41 GCGACTGCGGCAAAGCGAGAGCCTCGGAGACGCCGCTGCCG GCGACTGCGGCAAAGCGAGAACCTCGGAGACGCCGCTGCCG Direct Gain 0 0.974376815559502 NA NA prediction 0.948753631119005 Functional Gain - MAPK6 ENSG00000069956 UTR5 Human protein_coding chr15:52311474 chr15:52311474 . . 0 21 hm6Am_associated_SNPs_8416 0 0 1 0 1 MAPK6 chr15:52311573 5'GT 52311573 Upstream 100bp
2498 chr19 48972773 48972773 1 - C T COAD 48972773 - 48972753 48972793 41 CCCGACCTACCATAGACGCCGTCCTCCATGGCGGCTAGGAA CCCGACCTACCATAGACGCCATCCTCCATGGCGGCTAGGAA Direct Gain 0 0.974352532362339 NA NA prediction 0.948705064724677 Functional Gain - CYTH2 ENSG00000105443 CDS Human antisense chr19:48972773 chr19:48972773 synonymous SNV . 0 21 hm6Am_associated_SNPs_8422 0 0 0 0 1 CYTH2 chr19:48972687 5'GT 48972687 Upstream 87bp
2499 chr3 197476886 197476886 1 + C A BLCA 197476886 + 197476866 197476906 41 GGTGGGAGCCACGGCGACTTCTTCGCCGCCGCCGAAGGCCC GGTGGGAGCCACGGCGACTTATTCGCCGCCGCCGAAGGCCC Direct Gain 0 0.974340120646401 NA NA prediction 0.948680241292803 Functional Gain - FYTTD1 ENSG00000122068 CDS Human protein_coding chr3:197476886 chr3:197476886 nonsynonymous SNV 0.836 1 21 hm6Am_associated_SNPs_8425 0 0 1 0 1 FYTTD1 chr3:197476945 5'GT 197476945 Upstream 60bp
2500 chr1 63249842 63249842 1 + C A rs562403511 63249842 + 63249822 63249862 41 CGCTGAGGTCGGAACGTCTGCGTGTGTGCGGGCTGGTTTTG CGCTGAGGTCGGAACGTCTGAGTGTGTGCGGGCTGGTTTTG Direct Gain 0 0.974313033327581 NA NA prediction 0.948626066655162 Functional Gain - ATG4C ENSG00000125703 UTR5 Human protein_coding chr1:63249842 chr1:63249842 . . 0 21 hm6Am_associated_SNPs_8436 0 0 1 0 1 ATG4C chr1:63249896 5'GT 63249896 Upstream 55bp
2501 chrX 144899473 144899473 1 + G A rs782808934 144899473 + 144899453 144899493 41 GCCAGTCCGAGGCGGTGCCGGCTCCTTTGCCTCCCCGAGTC GCCAGTCCGAGGCGGTGCCGACTCCTTTGCCTCCCCGAGTC Direct Gain 0 0.974291150331467 NA NA prediction 0.948582300662934 Functional Gain - SLITRK2 ENSG00000185985 UTR5 Human protein_coding chrX:144899473 chrX:144899473 . . 0 21 hm6Am_associated_SNPs_8446 0 0 0 0 1 SLITRK2 chrX:144899544 5'GT 144899544 Upstream 72bp
2502 chr16 57702253 57702253 1 + G A rs376617355 57702253 + 57702233 57702273 41 TCCTGGCGTGGGCAAGGCTGGCCAAGGATGGCGACGCCCAG TCCTGGCGTGGGCAAGGCTGACCAAGGATGGCGACGCCCAG Direct Gain 0 0.974280980045086 NA NA prediction 0.948561960090172 Functional Gain - ADGRG3 ENSG00000182885 UTR5 Human protein_coding chr16:57702253 chr16:57702253 . . 0 21 hm6Am_associated_SNPs_8452 0 0 0 0 1 ADGRG3 chr16:57702317 5'GT 57702317 Upstream 65bp
2503 chr17 8339307 8339307 1 + G A rs8064417 8339307 + 8339287 8339327 41 TGGGCGGGCCTGGCCGGGCCGGCGGAGGGGAGACGTCGGTT TGGGCGGGCCTGGCCGGGCCAGCGGAGGGGAGACGTCGGTT Direct Gain 0 0.974278182460173 NA NA prediction 0.948556364920345 Functional Gain - NDEL1 ENSG00000166579 UTR5 Human protein_coding chr17:8339307 chr17:8339307 . . 0 21 hm6Am_associated_SNPs_8455 0 0 1 0 1 NDEL1 chr17:8339363 5'GT 8339363 Upstream 57bp
2504 chr15 52043877 52043877 1 + G A rs76930538 52043877 + 52043857 52043897 41 GGCTGACGGACTGACGGCCAGCACAGCCGGCTCCGGGATGA GGCTGACGGACTGACGGCCAACACAGCCGGCTCCGGGATGA Direct Gain 0 0.974219008865114 NA NA prediction 0.948438017730229 Functional Gain - TMOD2 ENSG00000128872 UTR5 Human protein_coding chr15:52043877 chr15:52043877 . . 0 21 hm6Am_associated_SNPs_8480 0 0 1 0 1 TMOD2 chr15:52043909 5'GT 52043909 Upstream 33bp
2505 chr8 104427088 104427088 1 - C T ESCA 104427088 - 104427068 104427108 41 CACGTCCGGTATGAGAACCTGATAGCGGGCGTGAGCGGCGG CACGTCCGGTATGAGAACCTAATAGCGGGCGTGAGCGGCGG Direct Gain 0 0.974110481317864 NA NA prediction 0.948220962635729 Functional Gain - SLC25A32 ENSG00000164933 CDS Human protein_coding chr8:104427088 chr8:104427088 synonymous SNV . 0 21 hm6Am_associated_SNPs_8512 0 0 1 0 1 SLC25A32 chr8:104427012 5'GT 104427012 Upstream 77bp
2506 chr11 60146055 60146055 1 + G A rs78843981 60146055 + 60146035 60146075 41 AGATCGTTCTGGCAGGAACAGCCAGTGGGAGGTTCCAGCTG AGATCGTTCTGGCAGGAACAACCAGTGGGAGGTTCCAGCTG Direct Gain 0 0.974101953201175 NA NA prediction 0.948203906402349 Functional Gain - MS4A7 ENSG00000166927;ENSG00000166928 UTR5 Human other chr11:60146055 chr11:60146055 . . 0 21 hm6Am_associated_SNPs_8513 0 0 0 0 2 MS4A7 chr11:60146089 5'GT 60146089 Upstream 35bp
2507 chr11 60146055 60146055 1 + G A rs78843981 60146055 + 60146035 60146075 41 AGATCGTTCTGGCAGGAACAGCCAGTGGGAGGTTCCAGCTG AGATCGTTCTGGCAGGAACAACCAGTGGGAGGTTCCAGCTG Direct Gain 0 0.974101953201175 NA NA prediction 0.948203906402349 Functional Gain - MS4A7 ENSG00000166927;ENSG00000166928 UTR5 Human other chr11:60146055 chr11:60146055 . . 0 21 hm6Am_associated_SNPs_8513 0 0 0 0 2 MS4A7 chr11:60146137 5'GT 60146137 Upstream 83bp
2508 chr5 77656459 77656459 1 + C A rs372743012 77656459 + 77656439 77656479 41 TCGCCTCGTCTCTCTCTCTGCGCCTGGGTCGGGTGGGTGAC TCGCCTCGTCTCTCTCTCTGAGCCTGGGTCGGGTGGGTGAC Direct Gain 0 0.974080094427223 NA NA prediction 0.948160188854446 Functional Gain - SCAMP1 ENSG00000085365 UTR5 Human protein_coding chr5:77656459 chr5:77656459 . . 0 21 hm6Am_associated_SNPs_8526 0 0 1 0 1 SCAMP1 chr5:77656552 5'GT 77656552 Upstream 94bp
2509 chr9 124922250 124922250 1 + C A rs72767777 124922250 + 124922230 124922270 41 CTGGAAGCTAAAAACAGGCGCCATGGAGTACACAGGGAGCA CTGGAAGCTAAAAACAGGCGACATGGAGTACACAGGGAGCA Direct Gain 0 0.974074652042437 NA NA prediction 0.948149304084875 Functional Gain - MORN5 ENSG00000185681 UTR5 Human protein_coding chr9:124922250 chr9:124922250 . . 0 21 hm6Am_associated_SNPs_8530 0 0 0 0 1 MORN5 chr9:124922298 5'GT 124922298 Upstream 49bp
2510 chrX 26210630 26210630 1 + T A rs756868338 26210630 + 26210610 26210650 41 GGAAGGAGGCGTCCCAGATCTTCTCAGCTGTCTTGGTGGGT GGAAGGAGGCGTCCCAGATCATCTCAGCTGTCTTGGTGGGT Direct Gain 0 0.97405504275508 NA NA prediction 0.948110085510161 Functional Gain - MAGEB6 ENSG00000176746 UTR5 Human protein_coding chrX:26210630 chrX:26210630 . . 0 21 hm6Am_associated_SNPs_8536 0 0 0 0 1 MAGEB6 chrX:26210644 5'GT 26210644 Upstream 15bp
2511 chr12 12765056 12765056 1 + G A rs759743 12765056 + 12765036 12765076 41 CGGGCCAGGCCGGCTGAGCCGGGGGAGGGCTCCGGGAGGGA CGGGCCAGGCCGGCTGAGCCAGGGGAGGGCTCCGGGAGGGA Direct Gain 0 0.973999956676617 NA NA prediction 0.947999913353233 Functional Gain - CREBL2 ENSG00000111269 UTR5 Human protein_coding chr12:12765056 chr12:12765056 . . 0 21 hm6Am_associated_SNPs_8558 0 0 1 0 1 CREBL2 chr12:12765121 5'GT 12765121 Upstream 66bp
2512 chr12 31226835 31226835 1 + T A rs7953706 31226835 + 31226815 31226855 41 TGAGGGGACCCGCCAGTTTCTAACTCAGTGGCGTTTGCCCT TGAGGGGACCCGCCAGTTTCAAACTCAGTGGCGTTTGCCCT Direct Gain 0 0.97394182220092 NA NA prediction 0.947883644401839 Functional Gain - DDX11 ENSG00000013573 UTR5 Human protein_coding chr12:31226835 chr12:31226835 . . 0 21 hm6Am_associated_SNPs_8578 0 0 1 0 1 DDX11 chr12:31226903 5'GT 31226903 Upstream 69bp
2513 chr10 65281286 65281286 1 + G A rs566246925 65281286 + 65281266 65281306 41 GCCCACCCGCCCCGGACGTGGGGCCCAAGCCCCCGTGAAGA GCCCACCCGCCCCGGACGTGAGGCCCAAGCCCCCGTGAAGA Direct Gain 0 0.973915712351708 NA NA prediction 0.947831424703417 Functional Gain - REEP3 ENSG00000165476 UTR5 Human protein_coding chr10:65281286 chr10:65281286 . . 0 21 hm6Am_associated_SNPs_8591 0 0 1 0 1 REEP3 chr10:65281337 5'GT 65281337 Upstream 52bp
2514 chr16 1832981 1832981 1 + G A rs550623556 1832981 + 1832961 1833001 41 GGGAGGCTGACGGCCCGCGGGCGTAAGCGGACTGCAGCCGC GGGAGGCTGACGGCCCGCGGACGTAAGCGGACTGCAGCCGC Direct Gain 0 0.973890837635453 NA NA prediction 0.947781675270906 Functional Gain - NUBP2 ENSG00000095906 UTR5 Human protein_coding chr16:1832981 chr16:1832981 . . 0 21 hm6Am_associated_SNPs_8596 0 0 1 0 1 NUBP2 chr16:1833037 5'GT 1833037 Upstream 57bp
2515 chr3 45730937 45730937 1 + G A rs183358538 45730937 + 45730917 45730957 41 CGGGGCGGGCGGAGAGAGAAGGAAGGAGGTGGTTGTGCAGG CGGGGCGGGCGGAGAGAGAAAGAAGGAGGTGGTTGTGCAGG Direct Gain 0 0.973805584387757 NA NA prediction 0.947611168775514 Functional Gain - SACM1L ENSG00000211456 UTR5 Human protein_coding chr3:45730937 chr3:45730937 . . 0 21 hm6Am_associated_SNPs_8614 0 0 1 0 1 SACM1L chr3:45730989 5'GT 45730989 Upstream 53bp
2516 chr1 117602965 117602965 1 + C A rs202173875 117602965 + 117602945 117602985 41 GTGGAACTTGGGGGACCCAGCGAAATGGAAGAAGTTAGGTG GTGGAACTTGGGGGACCCAGAGAAATGGAAGAAGTTAGGTG Direct Gain 0 0.973791340377841 NA NA prediction 0.947582680755681 Functional Gain - TTF2 ENSG00000116830 UTR5 Human protein_coding chr1:117602965 chr1:117602965 . . 0 21 hm6Am_associated_SNPs_8618 0 0 1 0 1 TTF2 chr1:117602996 5'GT 117602996 Upstream 32bp
2517 chr11 10472497 10472497 1 + G A rs572734481 10472497 + 10472477 10472517 41 CCGGCTGGCCTCAGTGCCCAGCAGCCCCGCTCCGCTCTGCC CCGGCTGGCCTCAGTGCCCAACAGCCCCGCTCCGCTCTGCC Direct Gain 0 0.973778600122376 NA NA prediction 0.947557200244752 Functional Gain - AMPD3 ENSG00000133805 UTR5 Human protein_coding chr11:10472497 chr11:10472497 . . 0 21 hm6Am_associated_SNPs_8623 0 0 0 0 1 AMPD3 chr11:10472590 5'GT 10472590 Upstream 94bp
2518 chr7 29846243 29846243 1 + G A rs13233912 29846243 + 29846223 29846263 41 CCGGAGGCGGCGGCGGCGGAGACGTCGGCCGGAGCTCGAGT CCGGAGGCGGCGGCGGCGGAAACGTCGGCCGGAGCTCGAGT Direct Gain 0 0.973768041434971 NA NA prediction 0.947536082869941 Functional Gain - WIPF3 ENSG00000122574 UTR5 Human protein_coding chr7:29846243 chr7:29846243 . . 0 21 hm6Am_associated_SNPs_8627 0 0 0 0 1 WIPF3 chr7:29846294 5'GT 29846294 Upstream 52bp
2519 chr9 120466787 120466787 1 + C A LUAD 120466787 + 120466767 120466807 41 GCCTGGCTGGGACTCTGATCCCAGCCATGGCCTTCCTCTCC GCCTGGCTGGGACTCTGATCACAGCCATGGCCTTCCTCTCC Direct Gain 0 0.97375190504529 NA NA prediction 0.947503810090579 Functional Gain - TLR4 ENSG00000136869 CDS Human protein_coding chr9:120466787 chr9:120466787 nonsynonymous SNV 0.546 0 21 hm6Am_associated_SNPs_8630 0 0 0 0 1 TLR4 chr9:120466843 5'GT 120466843 Upstream 57bp
2520 chr7 73624329 73624329 1 + G A rs368307287 73624329 + 73624309 73624349 41 GCAGGAAGCCCGCCCTGCCCGCCCGCCAGTGTCAGTGGTGT GCAGGAAGCCCGCCCTGCCCACCCGCCAGTGTCAGTGGTGT Direct Gain 0 0.973718121417917 NA NA prediction 0.947436242835834 Functional Gain - LAT2 ENSG00000086730 UTR5 Human protein_coding chr7:73624329 chr7:73624329 . . 0 21 hm6Am_associated_SNPs_8639 0 0 0 0 1 LAT2 chr7:73624418 5'GT 73624418 Upstream 90bp
2521 chrX 48398231 48398231 1 + C A rs202134988 48398231 + 48398211 48398251 41 ACTTGTCTGGCTCCGGAGCGCCCCCGCCCGGTGTGGGAGCT ACTTGTCTGGCTCCGGAGCGACCCCGCCCGGTGTGGGAGCT Direct Gain 0 0.973702891817157 NA NA prediction 0.947405783634313 Functional Gain - TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48398231 chrX:48398231 nonsynonymous SNV 0.943 1 21 hm6Am_associated_SNPs_8648 0 0 1 0 2 TBC1D25 chrX:48398308 5'GT 48398308 Upstream 78bp
2522 chrX 48398231 48398231 1 + C A rs202134988 48398231 + 48398211 48398251 41 ACTTGTCTGGCTCCGGAGCGCCCCCGCCCGGTGTGGGAGCT ACTTGTCTGGCTCCGGAGCGACCCCGCCCGGTGTGGGAGCT Direct Gain 0 0.973702891817157 NA NA prediction 0.947405783634313 Functional Gain - TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48398231 chrX:48398231 nonsynonymous SNV 0.943 1 21 hm6Am_associated_SNPs_8648 0 0 1 0 2 TBC1D25 chrX:48398320 5'GT 48398320 Upstream 90bp
2523 chr12 65672579 65672579 1 + C A rs200778091 65672579 + 65672559 65672599 41 GGCGGACCCTCCCGCGCCCCCTCTCGCTCTGCCTCTCCCTC GGCGGACCCTCCCGCGCCCCATCTCGCTCTGCCTCTCCCTC Direct Gain 0 0.973659856351435 NA NA prediction 0.947319712702871 Functional Gain - MSRB3 ENSG00000174099 CDS Human protein_coding chr12:65672579 chr12:65672579 nonsynonymous SNV 0.458 0 21 hm6Am_associated_SNPs_8659 0 0 0 0 1 MSRB3 chr12:65672645 5'GT 65672645 Upstream 67bp
2524 chr1 219347267 219347267 1 + G A UCEC 219347267 + 219347247 219347287 41 GGGGTCGGTTCTGCAGCGCTGTATCGTGTCGCCGGCAGGGA GGGGTCGGTTCTGCAGCGCTATATCGTGTCGCCGGCAGGGA Direct Gain 0 0.973635564926044 NA NA prediction 0.947271129852089 Functional Gain - LYPLAL1 ENSG00000143353 CDS Human protein_coding chr1:219347267 chr1:219347267 nonsynonymous SNV 0.039 2 21 hm6Am_associated_SNPs_8666 0 0 1 0 1 LYPLAL1 chr1:219347323 5'GT 219347323 Upstream 57bp
2525 chr1 7831429 7831429 1 + G A rs541088448 7831429 + 7831409 7831449 41 CTCTCGTCGCCGCTGCCGCCGCCGCAGCTGCCAAAATGTGA CTCTCGTCGCCGCTGCCGCCACCGCAGCTGCCAAAATGTGA Direct Gain 0 0.97360981899033 NA NA prediction 0.94721963798066 Functional Gain - VAMP3 ENSG00000049245 UTR5 Human protein_coding chr1:7831429 chr1:7831429 . . 0 21 hm6Am_associated_SNPs_8678 0 0 1 0 1 VAMP3 chr1:7831445 5'GT 7831445 Upstream 17bp
2526 chr12 56915782 56915782 1 + G A rs808929 56915782 + 56915762 56915802 41 TCTCTCTCTCTCTCTCTCTCGCTCGTTCCCTAACATTAAAG TCTCTCTCTCTCTCTCTCTCACTCGTTCCCTAACATTAAAG Direct Gain 0 0.973608961635689 NA NA prediction 0.947217923271377 Functional Gain - RBMS2 ENSG00000076067 UTR5 Human protein_coding chr12:56915782 chr12:56915782 . . 0 21 hm6Am_associated_SNPs_8679 0 0 0 0 1 RBMS2 chr12:56915873 5'GT 56915873 Upstream 92bp
2527 chr1 234509334 234509334 1 + G A rs113294015 234509334 + 234509314 234509354 41 ACCCTGCAGTGGCAGGACTCGGCACCGCGCCCTCCACCGCC ACCCTGCAGTGGCAGGACTCAGCACCGCGCCCTCCACCGCC Direct Gain 0 0.97360632100611 NA NA prediction 0.94721264201222 Functional Gain - COA6 ENSG00000168275 CDS Human protein_coding chr1:234509334 chr1:234509334 nonsynonymous SNV 0.004 1 21 hm6Am_associated_SNPs_8680 0 0 1 0 1 COA6 chr1:234509424 5'GT 234509424 Upstream 91bp
2528 chr16 75600365 75600365 1 + G A rs8192515 75600365 + 75600345 75600385 41 CGGCTCCGCGAGCCGGTTCCGTCCCCTTCCCGCCGCCGCCA CGGCTCCGCGAGCCGGTTCCATCCCCTTCCCGCCGCCGCCA Direct Gain 0 0.97352803150183 NA NA prediction 0.947056063003659 Functional Gain - GABARAPL2 ENSG00000259992 ncRNA_intronic Human protein_coding chr16:75600365 chr16:75600365 . . 0 21 hm6Am_associated_SNPs_8707 0 0 1 0 1 GABARAPL2 chr16:75600418 5'GT 75600418 Upstream 54bp
2529 chr3 20227639 20227639 1 - C T rs151299371 20227639 - 20227619 20227659 41 GTACGGTCCTGGAGGGCCCAGTGCGCGGGGCTAGCCGTGGC GTACGGTCCTGGAGGGCCCAATGCGCGGGGCTAGCCGTGGC Direct Gain 0 0.973410393920627 NA NA prediction 0.946820787841253 Functional Gain - SGO1 ENSG00000237485 ncRNA_exonic Human other chr3:20227639 chr3:20227639 . . 0 21 hm6Am_associated_SNPs_8753 0 0 1 0 1 SGO1-AS1 chr3:20227551 5'GT 20227551 Upstream 89bp
2530 chr1 113616195 113616195 1 + G A SARC 113616195 + 113616175 113616215 41 CCGCATTCCTCTCCTGGACTGCAGTCGCAGGAAATTGCCCG CCGCATTCCTCTCCTGGACTACAGTCGCAGGAAATTGCCCG Direct Gain 0 0.973407742541653 NA NA prediction 0.946815485083306 Functional Gain - LRIG2 ENSG00000198799 CDS Human protein_coding chr1:113616195 chr1:113616195 nonsynonymous SNV 0.998 3 21 hm6Am_associated_SNPs_8754 0 0 1 0 1 LRIG2 chr1:113616267 5'GT 113616267 Upstream 73bp
2531 chr16 89238228 89238228 1 + G A rs117058444 89238228 + 89238208 89238248 41 TGCACTCCGGCCCGGCTCCCGCCTCGGCCCCGATGGACGCC TGCACTCCGGCCCGGCTCCCACCTCGGCCCCGATGGACGCC Direct Gain 0 0.9733695222088 NA NA prediction 0.946739044417599 Functional Gain - CDH15 ENSG00000129910 UTR5 Human protein_coding chr16:89238228 chr16:89238228 . . 0 21 hm6Am_associated_SNPs_8772 0 0 0 0 1 CDH15 chr16:89238281 5'GT 89238281 Upstream 54bp
2532 chr17 5095388 5095388 1 + G A rs1873961 5095388 + 5095368 5095408 41 GGCTGGTTACCAAGGTTACCGCCGAGAGGCCGCGTCCTCAG GGCTGGTTACCAAGGTTACCACCGAGAGGCCGCGTCCTCAG Direct Gain 0 0.973363164321523 NA NA prediction 0.946726328643045 Functional Gain - LOC100130950 ENSG00000261879 ncRNA_exonic Human antisense chr17:5095388 chr17:5095388 . . 0 21 hm6Am_associated_SNPs_8777 0 0 0 0 1 LOC100130950 chr17:5095458 5'GT 5095458 Upstream 71bp
2533 chr19 12036000 12036000 1 + G A rs199578342 12036000 + 12035980 12036020 41 GACCTGGTGCCTGTACCCAGGCTTCTGTCGCTCTGTCGCCT GACCTGGTGCCTGTACCCAGACTTCTGTCGCTCTGTCGCCT Direct Gain 0 0.97330435062676 NA NA prediction 0.946608701253519 Functional Gain - ZNF700 ENSG00000196757;ENSG00000197054;ENSG00000267179 UTR5 Human other chr19:12036000 chr19:12036000 . . 0 21 hm6Am_associated_SNPs_8800 0 0 1 0 1 ZNF700 chr19:12036088 5'GT 12036088 Upstream 89bp
2534 chr2 170551019 170551019 1 + T A rs115957102 170551019 + 170550999 170551039 41 AGAAGAGAGGCGCCTGCGCTTGCGAGCTGGGCTTGTGAGTG AGAAGAGAGGCGCCTGCGCTAGCGAGCTGGGCTTGTGAGTG Direct Gain 0 0.973302732608363 NA NA prediction 0.946605465216727 Functional Gain - PHOSPHO2;PHOSPHO2-KLHL23 ENSG00000144362;ENSG00000213160 UTR5 Human other chr2:170551019 chr2:170551019 . . 0 21 hm6Am_associated_SNPs_8802 0 0 1 0 1 PHOSPHO2;PHOSPHO2-KLHL23 chr2:170551032 5'GT 170551032 Upstream 14bp
2535 chr8 41386847 41386847 1 + C A rs574307713 41386847 + 41386827 41386867 41 GCTTCCTGGTGCCCCGACTGCGTCCCCACGAACGCCCCGTC GCTTCCTGGTGCCCCGACTGAGTCCCCACGAACGCCCCGTC Direct Gain 0 0.973252395935937 NA NA prediction 0.946504791871874 Functional Gain - GINS4 ENSG00000147536 UTR5 Human protein_coding chr8:41386847 chr8:41386847 . . 0 21 hm6Am_associated_SNPs_8811 0 0 1 0 1 GINS4 chr8:41386915 5'GT 41386915 Upstream 69bp
2536 chr11 67071065 67071065 1 + G A rs566914023 67071065 + 67071045 67071085 41 TGAGGGAAGGGGCCGTGCCCGGTGCCAGCCCAGGTGCTCGC TGAGGGAAGGGGCCGTGCCCAGTGCCAGCCCAGGTGCTCGC Direct Gain 0 0.973241110573057 NA NA prediction 0.946482221146114 Functional Gain - SSH3 ENSG00000172830 UTR5 Human protein_coding chr11:67071065 chr11:67071065 . . 0 21 hm6Am_associated_SNPs_8817 0 0 1 0 1 SSH3 chr11:67071162 5'GT 67071162 Upstream 98bp
2537 chr11 8704338 8704338 1 + C A rs199764465 8704338 + 8704318 8704358 41 CGAGACTTGGCGAAGGCCTTCCTTTTTCGTCTGGGCTGCCA CGAGACTTGGCGAAGGCCTTACTTTTTCGTCTGGGCTGCCA Direct Gain 0 0.973180097090071 NA NA prediction 0.946360194180142 Functional Gain - RPL27A ENSG00000166441 UTR5 Human protein_coding chr11:8704338 chr11:8704338 . . 0 21 hm6Am_associated_SNPs_8838 0 0 1 0 1 RPL27A chr11:8704363 5'GT 8704363 Upstream 26bp
2538 chr20 43160617 43160617 1 + C A rs73611738 43160617 + 43160597 43160637 41 ACGGAGAGGCGGCGAGACCGCAGGTGAGCAGGAGCCGGGCG ACGGAGAGGCGGCGAGACCGAAGGTGAGCAGGAGCCGGGCG Direct Gain 0 0.973167643922794 NA NA prediction 0.946335287845588 Functional Gain - PKIG ENSG00000168734 UTR5 Human protein_coding chr20:43160617 chr20:43160617 . . 0 21 hm6Am_associated_SNPs_8844 0 0 1 0 1 PKIG chr20:43160619 5'GT 43160619 Upstream 3bp
2539 chr4 159131711 159131711 1 + G A rs146528407 159131711 + 159131691 159131731 41 GCGCCGGCGCTGAGTAGGAAGGAGCTTCAGCCGCCAGCCCG GCGCCGGCGCTGAGTAGGAAAGAGCTTCAGCCGCCAGCCCG Direct Gain 0 0.973165448245507 NA NA prediction 0.946330896491014 Functional Gain - TMEM144 ENSG00000164124 UTR5 Human protein_coding chr4:159131711 chr4:159131711 . . 0 21 hm6Am_associated_SNPs_8845 0 0 1 0 1 TMEM144 chr4:159131738 5'GT 159131738 Upstream 28bp
2540 chr2 112656279 112656279 1 + G A rs141412373 112656279 + 112656259 112656299 41 GGACGTCCATCTGTCCATCCGTCCGGAGAGAAATTACAGAT GGACGTCCATCTGTCCATCCATCCGGAGAGAAATTACAGAT Direct Gain 0 0.973150354948218 NA NA prediction 0.946300709896436 Functional Gain - MERTK ENSG00000153208 UTR5 Human protein_coding chr2:112656279 chr2:112656279 . . 0 21 hm6Am_associated_SNPs_8846 1 0 1 0 1 MERTK chr2:112656373 5'GT 112656373 Upstream 95bp
2541 chr4 55524168 55524168 1 + T A rs140909964 55524168 + 55524148 55524188 41 GGACCAGAGCTCGGATCCCATCGCAGCTACCGCGATGAGAG GGACCAGAGCTCGGATCCCAACGCAGCTACCGCGATGAGAG Direct Gain 0 0.973133357492316 NA NA prediction 0.946266714984632 Functional Gain - KIT ENSG00000157404 UTR5 Human protein_coding chr4:55524168 chr4:55524168 . . 0 21 hm6Am_associated_SNPs_8853 4 0 0 0 1 KIT chr4:55524248 5'GT 55524248 Upstream 81bp
2542 chr20 46130690 46130690 1 + G A rs562909487 46130690 + 46130670 46130710 41 GCTGCGGCTTAGTCGGTGGCGGCCGGCGGCGGCTGCGGGCT GCTGCGGCTTAGTCGGTGGCAGCCGGCGGCGGCTGCGGGCT Direct Gain 0 0.97312631719678 NA NA prediction 0.946252634393559 Functional Gain - NCOA3 ENSG00000124151 UTR5 Human protein_coding chr20:46130690 chr20:46130690 . . 0 21 hm6Am_associated_SNPs_8854 0 0 1 0 1 NCOA3 chr20:46130763 5'GT 46130763 Upstream 74bp
2543 chr1 151372131 151372131 1 + G A rs115066321 151372131 + 151372111 151372151 41 GGCCCCAGGACAGTTTTACCGCATTCCGTCCACTCCCGATT GGCCCCAGGACAGTTTTACCACATTCCGTCCACTCCCGATT Direct Gain 0 0.97311887547173 NA NA prediction 0.946237750943459 Functional Gain - PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151372131 chr1:151372131 nonsynonymous SNV 0.316 0 21 hm6Am_associated_SNPs_8858 0 0 1 0 1 PSMB4 chr1:151372203 5'GT 151372203 Upstream 73bp
2544 chr1 111991879 111991879 1 + G A rs144089879 111991879 + 111991859 111991899 41 ACCCCACGTGGTGCACCTCTGAGCCTCCGCCCCTCTCCCGA ACCCCACGTGGTGCACCTCTAAGCCTCCGCCCCTCTCCCGA Direct Gain 0 0.973105244255006 NA NA prediction 0.946210488510013 Functional Gain - ATP5F1;WDR77 ENSG00000116455;ENSG00000116459 UTR5 Human other chr1:111991879 chr1:111991879 . . 0 21 hm6Am_associated_SNPs_8866 0 0 0 0 1 ATP5F1;WDR77 chr1:111991817 3'AG 111991817 Downstream 63bp
2545 chr2 264964 264964 1 + G A LUAD 264964 + 264944 264984 41 GGCGCCTCTGCGCGCGGGAAGATGGCGGAACAGGCTACCAA GGCGCCTCTGCGCGCGGGAAAATGGCGGAACAGGCTACCAA Direct Gain 0 0.97300245134447 NA NA prediction 0.946004902688941 Functional Gain - ACP1 ENSG00000143727 UTR5 Human protein_coding chr2:264964 chr2:264964 . . 0 21 hm6Am_associated_SNPs_8901 0 0 1 0 1 ACP1 chr2:265007 5'GT 265007 Upstream 44bp
2546 chr8 97506460 97506460 1 + G A UCEC 97506460 + 97506440 97506480 41 GGAGGCTTCGTTTTGCCCTGGTTGCAAGCAGCGGCTGGGAG GGAGGCTTCGTTTTGCCCTGATTGCAAGCAGCGGCTGGGAG Direct Gain 0 0.972964657331358 NA NA prediction 0.945929314662717 Functional Gain - SDC2 ENSG00000169439 UTR5 Human protein_coding chr8:97506460 chr8:97506460 . . 0 21 hm6Am_associated_SNPs_8913 0 0 1 0 1 SDC2 chr8:97506559 5'GT 97506559 Upstream 100bp
2547 chr4 164415933 164415933 1 + C A LUAD 164415933 + 164415913 164415953 41 TCTAGAGTGCGGAGCTGCTCCGTGGCCACGAGGACGTCACC TCTAGAGTGCGGAGCTGCTCAGTGGCCACGAGGACGTCACC Direct Gain 0 0.972959357594488 NA NA prediction 0.945918715188976 Functional Gain - TMA16 ENSG00000198498 UTR5 Human protein_coding chr4:164415933 chr4:164415933 . . 0 21 hm6Am_associated_SNPs_8917 0 0 1 0 1 TMA16 chr4:164415956 5'GT 164415956 Upstream 24bp
2548 chr9 38392743 38392743 1 + G A rs548897285 38392743 + 38392723 38392763 41 TGGGCGGCCATGTGGACAGAGCTGGGAGGGCCGGAACCAGA TGGGCGGCCATGTGGACAGAACTGGGAGGGCCGGAACCAGA Direct Gain 0 0.972911909930479 NA NA prediction 0.945823819860958 Functional Gain - ALDH1B1 ENSG00000137124 UTR5 Human protein_coding chr9:38392743 chr9:38392743 . . 0 21 hm6Am_associated_SNPs_8933 0 0 1 0 1 ALDH1B1 chr9:38392804 5'GT 38392804 Upstream 62bp
2549 chr1 54412164 54412164 1 + G A rs190559377 54412164 + 54412144 54412184 41 CCTTCCCCGTCAGCCGGGCCGCGGGAGGAGGGAGCCGTCAC CCTTCCCCGTCAGCCGGGCCACGGGAGGAGGGAGCCGTCAC Direct Gain 0 0.972881736151523 NA NA prediction 0.945763472303047 Functional Gain - LRRC42 ENSG00000116212 UTR5 Human protein_coding chr1:54412164 chr1:54412164 . . 0 21 hm6Am_associated_SNPs_8941 0 0 1 0 1 LRRC42 chr1:54412222 5'GT 54412222 Upstream 59bp
2550 chr22 20710095 20710095 1 + G A rs191456038 20710095 + 20710075 20710115 41 AGGTCGCCGCCCAGGGCGTCGCTAACGAGGACGCCGCCCAC AGGTCGCCGCCCAGGGCGTCACTAACGAGGACGCCGCCCAC Direct Gain 0 0.972875748600027 NA NA prediction 0.945751497200055 Functional Gain - LOC101927859;ZNF74 ENSG00000188280 CDS Human antisense chr22:20710095 chr22:20710095 synonymous SNV . 0 21 hm6Am_associated_SNPs_8942 0 0 0 0 1 LOC101927859;ZNF74 chr22:20710023 3'AG 20710023 Downstream 73bp
2551 chr16 72821597 72821597 1 + G A BLCA 72821597 + 72821577 72821617 41 GCCAGGCAGTGGTACGAGCCGCCGCCGCCGCCGCCGCCGCC GCCAGGCAGTGGTACGAGCCACCGCCGCCGCCGCCGCCGCC Direct Gain 0 0.972873759964349 NA NA prediction 0.945747519928698 Functional Gain - ZFHX3 ENSG00000140836 CDS Human protein_coding chr16:72821597 chr16:72821597 synonymous SNV . 0 21 hm6Am_associated_SNPs_8943 0 0 1 0 1 ZFHX3 chr16:72821562 3'AG 72821562 Downstream 36bp
2552 chr6 31515442 31515442 1 + G A rs184482758 31515442 + 31515422 31515462 41 GCCTTGGGCCTACGGCTCTGGGGGTACTTGGGGGGGCGGGG GCCTTGGGCCTACGGCTCTGAGGGTACTTGGGGGGGCGGGG Direct Gain 0 0.97284017057153 NA NA prediction 0.945680341143059 Functional Gain - NFKBIL1 ENSG00000204498 UTR5 Human protein_coding chr6:31515442 chr6:31515442 . . 0 21 hm6Am_associated_SNPs_8962 0 0 1 0 1 NFKBIL1 chr6:31515528 5'GT 31515528 Upstream 87bp
2553 chr19 17448386 17448386 1 + G A rs533025425 17448386 + 17448366 17448406 41 CCAGACTTGAAGCCACACAGGCAGGTCGGGCAGGCGGGTCG CCAGACTTGAAGCCACACAGACAGGTCGGGCAGGCGGGTCG Direct Gain 0 0.972832093743488 NA NA prediction 0.945664187486977 Functional Gain - GTPBP3 ENSG00000130299 UTR5 Human protein_coding chr19:17448386 chr19:17448386 . . 0 21 hm6Am_associated_SNPs_8968 0 0 1 0 1 GTPBP3 chr19:17448473 5'GT 17448473 Upstream 88bp
2554 chr5 177540748 177540748 1 + G A rs568662230 177540748 + 177540728 177540768 41 GCAAGGGCTGCGGAGCCGCGGGCCGGCGAGCGCGTCGCCAC GCAAGGGCTGCGGAGCCGCGAGCCGGCGAGCGCGTCGCCAC Direct Gain 0 0.972783551983157 NA NA prediction 0.945567103966313 Functional Gain - N4BP3 ENSG00000145911 UTR5 Human protein_coding chr5:177540748 chr5:177540748 . . 0 21 hm6Am_associated_SNPs_8993 0 0 0 0 1 N4BP3 chr5:177540772 5'GT 177540772 Upstream 25bp
2555 chr21 17102663 17102663 1 + G A rs569836016 17102663 + 17102643 17102683 41 CAGCCAGGGCCGGCGGAGGCGCGAGGAGCCGGGCGCCACCG CAGCCAGGGCCGGCGGAGGCACGAGGAGCCGGGCGCCACCG Direct Gain 0 0.972751576422736 NA NA prediction 0.945503152845472 Functional Gain - USP25 ENSG00000155313 UTR5 Human protein_coding chr21:17102663 chr21:17102663 . . 0 21 hm6Am_associated_SNPs_9004 0 0 1 0 1 USP25 chr21:17102757 5'GT 17102757 Upstream 95bp
2556 chr9 97021608 97021608 1 + G A rs116138843 97021608 + 97021588 97021628 41 TCGCGTACTTCCGCGTTCCGGCATCGTCGCCTGGTGCGTGG TCGCGTACTTCCGCGTTCCGACATCGTCGCCTGGTGCGTGG Direct Gain 0 0.972719563874291 NA NA prediction 0.945439127748583 Functional Gain - ZNF169 ENSG00000175787 UTR5 Human protein_coding chr9:97021608 chr9:97021608 . . 0 21 hm6Am_associated_SNPs_9015 0 0 1 0 1 ZNF169 chr9:97021627 5'GT 97021627 Upstream 20bp
2557 chr3 49209058 49209058 1 + C A rs13096406 49209058 + 49209038 49209078 41 GACTTCAGCCCCAGCCAGATCCCGCGTCAACGGAGGCGGAA GACTTCAGCCCCAGCCAGATACCGCGTCAACGGAGGCGGAA Direct Gain 0 0.972684570219834 NA NA prediction 0.945369140439668 Functional Gain - KLHDC8B ENSG00000185909 UTR5 Human protein_coding chr3:49209058 chr3:49209058 . . 0 21 hm6Am_associated_SNPs_9024 0 0 1 0 1 KLHDC8B chr3:49209118 5'GT 49209118 Upstream 61bp
2558 chr17 56270185 56270185 1 + G A UCEC 56270185 + 56270165 56270205 41 TGGATGTCACTCACTTCCCAGCTGGTGAAGCCTCGCTGCAG TGGATGTCACTCACTTCCCAACTGGTGAAGCCTCGCTGCAG Direct Gain 0 0.972681878703024 NA NA prediction 0.945363757406048 Functional Gain - EPX ENSG00000121053 UTR5 Human protein_coding chr17:56270185 chr17:56270185 . . 0 21 hm6Am_associated_SNPs_9025 0 0 0 0 1 EPX chr17:56270283 5'GT 56270283 Upstream 99bp
2559 chr11 13299470 13299470 1 + G A rs557642365 13299470 + 13299450 13299490 41 GGGCGCTCCCGGCGAGCCACGGTGAGTGTCAGGCCGGCGGC GGGCGCTCCCGGCGAGCCACAGTGAGTGTCAGGCCGGCGGC Direct Gain 0 0.972616143723271 NA NA prediction 0.945232287446542 Functional Gain - ARNTL ENSG00000133794 UTR5 Human protein_coding chr11:13299470 chr11:13299470 . . 0 21 hm6Am_associated_SNPs_9044 0 0 0 3 1 ARNTL chr11:13299470 5'GT 13299470 Upstream 1bp
2560 chr16 88729788 88729788 1 + C A rs3794628 88729788 + 88729768 88729808 41 CTGGCGTCCGCGTCGGCGATCCGGGGTCTGGGCGCGGCGAG CTGGCGTCCGCGTCGGCGATACGGGGTCTGGGCGCGGCGAG Direct Gain 0 0.972527989210067 NA NA prediction 0.945055978420134 Functional Gain - SNAI3-AS1 ENSG00000260630 ncRNA_exonic Human antisense chr16:88729788 chr16:88729788 . . 0 21 hm6Am_associated_SNPs_9075 0 0 1 0 1 SNAI3-AS1 chr16:88729808 5'GT 88729808 Upstream 21bp
2561 chr11 9482560 9482560 1 + C A rs369691663 9482560 + 9482540 9482580 41 TGCGGGGCCTGGGGGCCGGACGGCTGTTTCCTGTCCTGGTG TGCGGGGCCTGGGGGCCGGAAGGCTGTTTCCTGTCCTGGTG Direct Gain 0 0.972516839404413 NA NA prediction 0.945033678808825 Functional Gain - ZNF143 ENSG00000166478 UTR5 Human protein_coding chr11:9482560 chr11:9482560 . . 0 21 hm6Am_associated_SNPs_9080 0 0 0 0 1 ZNF143 chr11:9482623 5'GT 9482623 Upstream 64bp
2562 chr3 43732461 43732461 1 + C A rs189850893 43732461 + 43732441 43732481 41 CAGCCGGCTTCGAGATAAGTCCCGGCGCTTGCGCGGCGGCG CAGCCGGCTTCGAGATAAGTACCGGCGCTTGCGCGGCGGCG Direct Gain 0 0.972508848719751 NA NA prediction 0.945017697439502 Functional Gain - ABHD5 ENSG00000011198 UTR5 Human protein_coding chr3:43732461 chr3:43732461 . . 0 21 hm6Am_associated_SNPs_9081 0 0 1 0 1 ABHD5 chr3:43732531 5'GT 43732531 Upstream 71bp
2563 chr1 65886398 65886398 1 + T A rs3790435 65886398 + 65886378 65886418 41 GGAAGCAGCCGCGGCCCCAGTTCGGGAGACATGGCGGGCGT GGAAGCAGCCGCGGCCCCAGATCGGGAGACATGGCGGGCGT Direct Gain 0 0.972465091864584 NA NA prediction 0.944930183729168 Functional Gain - LEPR;LEPROT ENSG00000116678;ENSG00000213625 UTR5 Human protein_coding chr1:65886398 chr1:65886398 . . 0 21 hm6Am_associated_SNPs_9095 0 0 1 0 1 LEPROT chr1:65886423 5'GT 65886423 Upstream 26bp
2564 chr16 67700900 67700900 1 + G A UCEC 67700900 + 67700880 67700920 41 TCGGCAGGGGCGGAGAGGCGGCCGGGGGTCCAGGAGGCGAC TCGGCAGGGGCGGAGAGGCGACCGGGGGTCCAGGAGGCGAC Direct Gain 0 0.972456290167953 NA NA prediction 0.944912580335905 Functional Gain - C16orf86 ENSG00000159761 CDS Human protein_coding chr16:67700900 chr16:67700900 synonymous SNV . 0 21 hm6Am_associated_SNPs_9103 0 0 0 0 1 C16orf86 chr16:67700975 5'GT 67700975 Upstream 76bp
2565 chr16 2255800 2255800 1 + G A rs556405323 2255800 + 2255780 2255820 41 ACTCCCCCCTGCCGGCTGCGGAGGTGGGGGGGGGACGGCGC ACTCCCCCCTGCCGGCTGCGAAGGTGGGGGGGGGACGGCGC Direct Gain 0 0.972446601818723 NA NA prediction 0.944893203637446 Functional Gain - MLST8 ENSG00000167965 UTR5 Human protein_coding chr16:2255800 chr16:2255800 . . 0 21 hm6Am_associated_SNPs_9107 0 0 1 0 1 MLST8 chr16:2255876 5'GT 2255876 Upstream 77bp
2566 chr9 131644472 131644472 1 + G A rs147093925 131644472 + 131644452 131644492 41 CAGCGCTGCGGCCGGCGGCGGGACGGAGCGGCCGGGGCCTG CAGCGCTGCGGCCGGCGGCGAGACGGAGCGGCCGGGGCCTG Direct Gain 0 0.97239344186352 NA NA prediction 0.944786883727041 Functional Gain - LRRC8A ENSG00000136802 UTR5 Human protein_coding chr9:131644472 chr9:131644472 . . 0 21 hm6Am_associated_SNPs_9132 0 0 1 0 1 LRRC8A chr9:131644529 5'GT 131644529 Upstream 58bp
2567 chr11 6502728 6502728 1 + G A rs375833766 6502728 + 6502708 6502748 41 CTGAAACGGAAGTGGCGTACGGCATGCGCCGGTGGCGTGAT CTGAAACGGAAGTGGCGTACAGCATGCGCCGGTGGCGTGAT Direct Gain 0 0.972348989867773 NA NA prediction 0.944697979735545 Functional Gain - TIMM10B ENSG00000132286;ENSG00000265264 UTR5 Human other chr11:6502728 chr11:6502728 . . 0 21 hm6Am_associated_SNPs_9149 0 0 1 0 1 TIMM10B chr11:6502785 5'GT 6502785 Upstream 58bp
2568 chr3 184529963 184529963 1 + G A rs116661841 184529963 + 184529943 184529983 41 TGCGTGAGGCTAGAGCAGTGGGTGCGGTCACGTGGGCCGGC TGCGTGAGGCTAGAGCAGTGAGTGCGGTCACGTGGGCCGGC Direct Gain 0 0.972328965918704 NA NA prediction 0.944657931837409 Functional Gain - VPS8 ENSG00000156931 UTR5 Human protein_coding chr3:184529963 chr3:184529963 . . 0 21 hm6Am_associated_SNPs_9156 0 0 1 0 1 VPS8 chr3:184530013 5'GT 184530013 Upstream 51bp
2569 chr1 33116890 33116890 1 + C A rs185030853 33116890 + 33116870 33116910 41 CGCTCGACCCCAGGATTCCCCCGGCTCGCCTGCCCGCCATG CGCTCGACCCCAGGATTCCCACGGCTCGCCTGCCCGCCATG Direct Gain 0 0.97226103243194 NA NA prediction 0.94452206486388 Functional Gain - RBBP4 ENSG00000162521 UTR5 Human protein_coding chr1:33116890 chr1:33116890 . . 0 21 hm6Am_associated_SNPs_9180 0 0 1 0 1 RBBP4 chr1:33116923 5'GT 33116923 Upstream 34bp
2570 chr11 64889758 64889758 1 + C A rs368211890 64889758 + 64889738 64889778 41 ACCTGCCTGGGCAGGCAGCTCGCGCAGGACGGGGCGGGACC ACCTGCCTGGGCAGGCAGCTAGCGCAGGACGGGGCGGGACC Direct Gain 0 0.972235687095415 NA NA prediction 0.944471374190831 Functional Gain - MRPL49 ENSG00000149806 UTR5 Human other chr11:64889758 chr11:64889758 . . 0 21 hm6Am_associated_SNPs_9187 0 0 0 0 1 MRPL49 chr11:64889812 5'GT 64889812 Upstream 55bp
2571 chr9 131709986 131709986 1 + C A rs3750324 131709986 + 131709966 131710006 41 GGGGGCGGGGTTAGGGCGAGCGGGCGCGCGAAGATGGCGGC GGGGGCGGGGTTAGGGCGAGAGGGCGCGCGAAGATGGCGGC Direct Gain 0 0.972235135863175 NA NA prediction 0.94447027172635 Functional Gain - DOLK;NUP188 ENSG00000095319 UTR5 Human protein_coding chr9:131709986 chr9:131709986 . . 0 21 hm6Am_associated_SNPs_9188 0 0 1 0 1 NUP188 chr9:131710030 5'GT 131710030 Upstream 45bp
2572 chr4 146019451 146019451 1 - C T rs33978291 146019451 - 146019431 146019471 41 AATGGCGGTGCCCAGCCGCCGCACGCGCAAGCCATAGGACG AATGGCGGTGCCCAGCCGCCACACGCGCAAGCCATAGGACG Direct Gain 0 0.972163177505222 NA NA prediction 0.944326355010444 Functional Gain - ABCE1;ANAPC10 ENSG00000164162;ENSG00000164163 UTR5 Human other chr4:146019451 chr4:146019451 . . 0 21 hm6Am_associated_SNPs_9211 0 0 0 0 1 ABCE1;ANAPC10 chr4:146019388 5'GT 146019388 Upstream 64bp
2573 chr16 72127867 72127867 1 + C A rs111742588 72127867 + 72127847 72127887 41 TCAAGGTGTGGATTTTGGCTCCTTGAGCCTGTCTGAGCGAG TCAAGGTGTGGATTTTGGCTACTTGAGCCTGTCTGAGCGAG Direct Gain 0 0.972148398065125 NA NA prediction 0.944296796130251 Functional Gain - DHX38 ENSG00000140829 UTR5 Human protein_coding chr16:72127867 chr16:72127867 . . 0 21 hm6Am_associated_SNPs_9220 0 0 1 0 1 DHX38 chr16:72127950 5'GT 72127950 Upstream 84bp
2574 chr5 7869328 7869328 1 + G A rs148267849 7869328 + 7869308 7869348 41 TGCCCGGCTGGCGCGGCGTGGGTAAGCTGCCTGTCGGCTAC TGCCCGGCTGGCGCGGCGTGAGTAAGCTGCCTGTCGGCTAC Direct Gain 0 0.972090184057927 NA NA prediction 0.944180368115854 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7869328 chr5:7869328 unknown . 0 21 hm6Am_associated_SNPs_9237 0 0 1 1 1 MTRR chr5:7869328 5'GT 7869328 Upstream 1bp
2575 chr7 107220696 107220696 1 + G A rs544855360 107220696 + 107220676 107220716 41 GCCGCGGCGTCTGACGTCCCGCGCGTCGGCGGCCGCGGAGC GCCGCGGCGTCTGACGTCCCACGCGTCGGCGGCCGCGGAGC Direct Gain 0 0.972079387020921 NA NA prediction 0.944158774041843 Functional Gain - BCAP29 ENSG00000075790 UTR5 Human protein_coding chr7:107220696 chr7:107220696 . . 0 21 hm6Am_associated_SNPs_9245 0 0 1 0 1 BCAP29 chr7:107220746 5'GT 107220746 Upstream 51bp
2576 chr20 31619522 31619522 1 + G A UCEC 31619522 + 31619502 31619542 41 CGAGCTGACCCTGGGGCACTGCTGCGGTTGGGCATGGACAT CGAGCTGACCCTGGGGCACTACTGCGGTTGGGCATGGACAT Direct Gain 0 0.972046702951811 NA NA prediction 0.944093405903623 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31619522 chr20:31619522 synonymous SNV . 0 21 hm6Am_associated_SNPs_9256 0 0 0 0 2 BPIFB6 chr20:31619550 5'GT 31619550 Upstream 29bp
2577 chr20 31619522 31619522 1 + G A UCEC 31619522 + 31619502 31619542 41 CGAGCTGACCCTGGGGCACTGCTGCGGTTGGGCATGGACAT CGAGCTGACCCTGGGGCACTACTGCGGTTGGGCATGGACAT Direct Gain 0 0.972046702951811 NA NA prediction 0.944093405903623 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31619522 chr20:31619522 synonymous SNV . 0 21 hm6Am_associated_SNPs_9256 0 0 0 0 2 BPIFB6 chr20:31619553 5'GT 31619553 Upstream 32bp
2578 chr7 130132111 130132111 1 + G A rs568432428 130132111 + 130132091 130132131 41 CTGCGGGCTCTGCGGCGCCCGGTGCTCTGCAACGCTGCGGC CTGCGGGCTCTGCGGCGCCCAGTGCTCTGCAACGCTGCGGC Direct Gain 0 0.972021207665742 NA NA prediction 0.944042415331485 Functional Gain - MEST ENSG00000106484 UTR5 Human protein_coding chr7:130132111 chr7:130132111 . . 0 21 hm6Am_associated_SNPs_9268 0 0 0 0 1 MEST chr7:130132180 5'GT 130132180 Upstream 70bp
2579 chr15 32907710 32907710 1 + C A rs191291129 32907710 + 32907690 32907730 41 TGAAACTGCGGGTGTGACCCCCCCGTGGTGGCTCTGGGTGT TGAAACTGCGGGTGTGACCCACCCGTGGTGGCTCTGGGTGT Direct Gain 0 0.972005670372457 NA NA prediction 0.944011340744915 Functional Gain - ARHGAP11A ENSG00000198826 UTR5 Human protein_coding chr15:32907710 chr15:32907710 . . 0 21 hm6Am_associated_SNPs_9276 0 0 1 0 1 ARHGAP11A chr15:32907808 5'GT 32907808 Upstream 99bp
2580 chr1 9005933 9005933 1 + G A rs371272748 9005933 + 9005913 9005953 41 CGGAATCAGTCTTCATTACAGATGTGCAGCACCATGAGGGC CGGAATCAGTCTTCATTACAAATGTGCAGCACCATGAGGGC Direct Gain 0 0.971993974045812 NA NA prediction 0.943987948091625 Functional Gain - CA6 ENSG00000131686 UTR5 Human protein_coding chr1:9005933 chr1:9005933 . . 0 21 hm6Am_associated_SNPs_9280 0 0 0 0 1 CA6 chr1:9006024 5'GT 9006024 Upstream 92bp
2581 chr16 72821609 72821609 1 + G A BLCA 72821609 + 72821589 72821629 41 TACGAGCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCC TACGAGCCGCCGCCGCCGCCACCGCCGCCACCGCCGCCGCC Direct Gain 0 0.971979306312633 NA NA prediction 0.943958612625266 Functional Gain - ZFHX3 ENSG00000140836 CDS Human protein_coding chr16:72821609 chr16:72821609 synonymous SNV . 0 21 hm6Am_associated_SNPs_9286 0 0 1 0 1 ZFHX3 chr16:72821562 3'AG 72821562 Downstream 48bp
2582 chr9 80851527 80851527 1 + G A rs13292584 80851527 + 80851507 80851547 41 CTGGGGGACACAGGTTTGTAGTTCCCGCCTCCAGGGCCCCT CTGGGGGACACAGGTTTGTAATTCCCGCCTCCAGGGCCCCT Direct Gain 0 0.971942403576329 NA NA prediction 0.943884807152659 Functional Gain - CEP78 ENSG00000148019 intronic Human protein_coding chr9:80851527 chr9:80851527 . . 0 21 hm6Am_associated_SNPs_9303 0 0 1 0 1 CEP78 chr9:80851575 5'GT 80851575 Upstream 49bp
2583 chr17 12569493 12569493 1 + G A LUSC 12569493 + 12569473 12569513 41 GGCCAAGGGACCAGCGGCTTGCTGAGACTCAACATGACACT GGCCAAGGGACCAGCGGCTTACTGAGACTCAACATGACACT Direct Gain 0 0.971863782302516 NA NA prediction 0.943727564605031 Functional Gain - MYOCD ENSG00000141052 UTR5 Human protein_coding chr17:12569493 chr17:12569493 . . 0 21 hm6Am_associated_SNPs_9322 0 0 0 0 1 MYOCD chr17:12569560 5'GT 12569560 Upstream 68bp
2584 chr16 29674383 29674383 1 + G A rs534168543 29674383 + 29674363 29674403 41 ATCCTGATTCCAGATCCCACGCTTCCCTGCCTCCCTCAGGT ATCCTGATTCCAGATCCCACACTTCCCTGCCTCCCTCAGGT Direct Gain 0 0.971841954189686 NA NA prediction 0.943683908379372 Functional Gain - SPN ENSG00000197471 UTR5 Human protein_coding chr16:29674383 chr16:29674383 . . 0 21 hm6Am_associated_SNPs_9334 0 0 0 0 1 SPN chr16:29674401 5'GT 29674401 Upstream 19bp
2585 chr19 797439 797439 1 + G A rs199728719 797439 + 797419 797459 41 CTATAACTCGGAGCCGTTGGGTCGGTTCCTGCTATTCCGGC CTATAACTCGGAGCCGTTGGATCGGTTCCTGCTATTCCGGC Direct Gain 0 0.97169579475467 NA NA prediction 0.943391589509339 Functional Gain - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:797439 chr19:797439 unknown . 0 21 hm6Am_associated_SNPs_9383 0 0 1 0 1 PTBP1 chr19:797505 5'GT 797505 Upstream 67bp
2586 chr11 118175439 118175439 1 + G A rs2231440 118175439 + 118175419 118175459 41 GCCTCTCTACTTCCTGTGTGGGGTTCAGAAACCCTCCTCCC GCCTCTCTACTTCCTGTGTGAGGTTCAGAAACCCTCCTCCC Direct Gain 0 0.971510081527724 NA NA prediction 0.943020163055449 Functional Gain - CD3E ENSG00000198851 UTR5 Human protein_coding chr11:118175439 chr11:118175439 . . 0 21 hm6Am_associated_SNPs_9443 1 0 0 0 1 CD3E chr11:118175491 5'GT 118175491 Upstream 53bp
2587 chr20 42086703 42086703 1 + C A UCEC 42086703 + 42086683 42086723 41 GTCTACATAGGACGCCTGAGCTACAACGTCCGGGAGAAGGA GTCTACATAGGACGCCTGAGATACAACGTCCGGGAGAAGGA Direct Gain 0 0.971476054560374 NA NA prediction 0.942952109120748 Functional Gain - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42086703 chr20:42086703 nonsynonymous SNV 1.000 4 21 hm6Am_associated_SNPs_9458 0 0 1 0 1 SRSF6 chr20:42086780 5'GT 42086780 Upstream 78bp
2588 chr15 90728215 90728215 1 + C A rs576199409 90728215 + 90728195 90728235 41 CTCCGGGTCCCCAGGGGCTGCGCCGGGCCGGCCTGGCAAGG CTCCGGGTCCCCAGGGGCTGAGCCGGGCCGGCCTGGCAAGG Direct Gain 0 0.971426862265804 NA NA prediction 0.942853724531608 Functional Gain - SEMA4B ENSG00000185033 UTR5 Human protein_coding chr15:90728215 chr15:90728215 . . 0 21 hm6Am_associated_SNPs_9481 0 0 1 0 1 SEMA4B chr15:90728313 5'GT 90728313 Upstream 99bp
2589 chr20 42219664 42219664 1 + C A rs568217737 42219664 + 42219644 42219684 41 GGCCGCGGGATGCTGGGCGGCGTCAGGTGAGCGGTGGTCGC GGCCGCGGGATGCTGGGCGGAGTCAGGTGAGCGGTGGTCGC Direct Gain 0 0.971414010802316 NA NA prediction 0.942828021604631 Functional Gain - IFT52 ENSG00000101052 UTR5 Human protein_coding chr20:42219664 chr20:42219664 . . 0 21 hm6Am_associated_SNPs_9485 0 0 1 0 2 IFT52 chr20:42219669 5'GT 42219669 Upstream 6bp
2590 chr20 42219664 42219664 1 + C A rs568217737 42219664 + 42219644 42219684 41 GGCCGCGGGATGCTGGGCGGCGTCAGGTGAGCGGTGGTCGC GGCCGCGGGATGCTGGGCGGAGTCAGGTGAGCGGTGGTCGC Direct Gain 0 0.971414010802316 NA NA prediction 0.942828021604631 Functional Gain - IFT52 ENSG00000101052 UTR5 Human protein_coding chr20:42219664 chr20:42219664 . . 0 21 hm6Am_associated_SNPs_9485 0 0 1 0 2 IFT52 chr20:42219694 5'GT 42219694 Upstream 31bp
2591 chr20 30640190 30640190 1 + C A rs574057204 30640190 + 30640170 30640210 41 TAGTTCTAGAAAGTCAGTTTCCCGGCACTGGCACCCCGGAA TAGTTCTAGAAAGTCAGTTTACCGGCACTGGCACCCCGGAA Direct Gain 0 0.971366273181507 NA NA prediction 0.942732546363014 Functional Gain - HCK ENSG00000101336 UTR5 Human protein_coding chr20:30640190 chr20:30640190 . . 0 21 hm6Am_associated_SNPs_9497 0 0 0 0 1 HCK chr20:30640289 5'GT 30640289 Upstream 100bp
2592 chrX 130192388 130192388 1 + G A COAD 130192388 + 130192368 130192408 41 GGATACTGGACTGCCTTTTCGCCTCGGCCTTTGAGCCCCGC GGATACTGGACTGCCTTTTCACCTCGGCCTTTGAGCCCCGC Direct Gain 0 0.97133848860171 NA NA prediction 0.94267697720342 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130192388 chrX:130192388 nonsynonymous SNV 0.996 3 21 hm6Am_associated_SNPs_9508 0 0 0 0 1 ARHGAP36 chrX:130192418 5'GT 130192418 Upstream 31bp
2593 chr1 179263003 179263003 1 + G A rs11545566 179263003 + 179262983 179263023 41 CGGAGTCGACCTTCCTGCTGGCTGCTCTGTGACCGCTTCCC CGGAGTCGACCTTCCTGCTGACTGCTCTGTGACCGCTTCCC Direct Gain 0 0.971336859844384 NA NA prediction 0.942673719688769 Functional Gain - SOAT1 ENSG00000057252 UTR5 Human protein_coding chr1:179263003 chr1:179263003 . . 0 21 hm6Am_associated_SNPs_9509 0 0 1 0 1 SOAT1 chr1:179263071 5'GT 179263071 Upstream 69bp
2594 chr20 61438961 61438961 1 + C A rs116144456 61438961 + 61438941 61438981 41 ATCGGCACAACTATCCGGTACGTACCTGCCCCTGCCCCGGG ATCGGCACAACTATCCGGTAAGTACCTGCCCCTGCCCCGGG Direct Gain 0 0.971273173415296 NA NA prediction 0.942546346830592 Functional Gain - OGFR ENSG00000060491 UTR5 Human protein_coding chr20:61438961 chr20:61438961 . . 0 21 hm6Am_associated_SNPs_9528 0 0 1 0 2 OGFR chr20:61438889 3'AG 61438889 Downstream 73bp
2595 chr20 61438961 61438961 1 + C A rs116144456 61438961 + 61438941 61438981 41 ATCGGCACAACTATCCGGTACGTACCTGCCCCTGCCCCGGG ATCGGCACAACTATCCGGTAAGTACCTGCCCCTGCCCCGGG Direct Gain 0 0.971273173415296 NA NA prediction 0.942546346830592 Functional Gain - OGFR ENSG00000060491 UTR5 Human protein_coding chr20:61438961 chr20:61438961 . . 0 21 hm6Am_associated_SNPs_9528 0 0 1 0 2 OGFR chr20:61438894 3'AG 61438894 Downstream 68bp
2596 chr22 23437476 23437476 1 + G A rs539406626 23437476 + 23437456 23437496 41 GGAGCCGGAGGCGGGGGGCTGCAGGGAGCACACCAGCGACC GGAGCCGGAGGCGGGGGGCTACAGGGAGCACACCAGCGACC Direct Gain 0 0.971254394384371 NA NA prediction 0.942508788768742 Functional Gain - GNAZ ENSG00000128266 UTR5 Human protein_coding chr22:23437476 chr22:23437476 . . 0 21 hm6Am_associated_SNPs_9538 0 0 1 0 1 GNAZ chr22:23437434 3'AG 23437434 Downstream 43bp
2597 chr6 32821979 32821979 1 + G A rs116182120 32821979 + 32821959 32821999 41 GTTGGAAACCAGTGCCCCAGGCGGCGAGGAGAGCGGTGCCT GTTGGAAACCAGTGCCCCAGACGGCGAGGAGAGCGGTGCCT Direct Gain 0 0.971232532201726 NA NA prediction 0.942465064403451 Functional Gain - PSMB9 ENSG00000240065 UTR5 Human protein_coding chr6:32821979 chr6:32821979 . . 0 21 hm6Am_associated_SNPs_9547 0 0 1 0 1 PSMB9 chr6:32822066 5'GT 32822066 Upstream 88bp
2598 chr12 26348393 26348393 1 + G A rs572453304 26348393 + 26348373 26348413 41 CCGGCAGGCGCTGCGTCCCGGCGCGTTGGCAGTTGGCGACC CCGGCAGGCGCTGCGTCCCGACGCGTTGGCAGTTGGCGACC Direct Gain 0 0.971147406812552 NA NA prediction 0.942294813625105 Functional Gain - SSPN ENSG00000123096 UTR5 Human protein_coding chr12:26348393 chr12:26348393 . . 0 21 hm6Am_associated_SNPs_9584 0 0 1 0 1 SSPN chr12:26348464 5'GT 26348464 Upstream 72bp
2599 chr11 2422018 2422018 1 + G A rs373680294 2422018 + 2421998 2422038 41 AAGATGGAGACTGCCGAGCAGCCTTGAGCCGGTAGGTTTGT AAGATGGAGACTGCCGAGCAACCTTGAGCCGGTAGGTTTGT Direct Gain 0 0.971087725728618 NA NA prediction 0.942175451457236 Functional Gain - TSSC4 ENSG00000184281 UTR5 Human protein_coding chr11:2422018 chr11:2422018 . . 0 21 hm6Am_associated_SNPs_9599 0 0 1 0 1 TSSC4 chr11:2422028 5'GT 2422028 Upstream 11bp
2600 chr15 85144327 85144327 1 + C A rs556960709 85144327 + 85144307 85144347 41 AGCCCGGGGGCGCTTTCGCACGCGAAGCAACCGCTAGAGCA AGCCCGGGGGCGCTTTCGCAAGCGAAGCAACCGCTAGAGCA Direct Gain 0 0.970965682772115 NA NA prediction 0.94193136554423 Functional Gain - ZSCAN2 ENSG00000176371 UTR5 Human protein_coding chr15:85144327 chr15:85144327 . . 0 21 hm6Am_associated_SNPs_9646 0 0 1 0 1 ZSCAN2 chr15:85144366 5'GT 85144366 Upstream 40bp
2601 chr1 156182942 156182942 1 + C A BLCA 156182942 + 156182922 156182962 41 ACACCATGGTGGACACTTTTCTTCAGAAGCTGGTCGCCGCC ACACCATGGTGGACACTTTTATTCAGAAGCTGGTCGCCGCC Direct Gain 0 0.970929887843452 NA NA prediction 0.941859775686904 Functional Gain - PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156182942 chr1:156182942 nonsynonymous SNV 0.998 2 21 hm6Am_associated_SNPs_9656 0 0 1 0 1 PMF1;PMF1-BGLAP chr1:156182967 5'GT 156182967 Upstream 26bp
2602 chr9 15552873 15552873 1 + G A rs545479904 15552873 + 15552853 15552893 41 CGCGAGCCCGCCGCTCCCCAGCAACGGCGCATGCGCCCGTT CGCGAGCCCGCCGCTCCCCAACAACGGCGCATGCGCCCGTT Direct Gain 0 0.970888496087959 NA NA prediction 0.941776992175917 Functional Gain - CCDC171 ENSG00000164989 upstream Human protein_coding chr9:15552873 chr9:15552873 . . 0 21 hm6Am_associated_SNPs_9677 0 0 0 0 1 CCDC171 chr9:15552958 5'GT 15552958 Upstream 86bp
2603 chr4 37828336 37828336 1 + C A rs28411380 37828336 + 37828316 37828356 41 CCGCCTGCTTCCCTCTGCAGCGGTAGCACAAGCTCAGCGAT CCGCCTGCTTCCCTCTGCAGAGGTAGCACAAGCTCAGCGAT Direct Gain 0 0.970864008810889 NA NA prediction 0.941728017621777 Functional Gain - PGM2 ENSG00000169299 UTR5 Human protein_coding chr4:37828336 chr4:37828336 . . 0 21 hm6Am_associated_SNPs_9691 0 0 1 0 1 PGM2 chr4:37828435 5'GT 37828435 Upstream 100bp
2604 chr22 37962126 37962126 1 + T A rs138215550 37962126 + 37962106 37962146 41 CGACCACCTCGGGGGTGCTTTCTCTGCGCTTGAACATCTAT CGACCACCTCGGGGGTGCTTACTCTGCGCTTGAACATCTAT Direct Gain 0 0.970757256800609 NA NA prediction 0.941514513601217 Functional Gain - CDC42EP1 ENSG00000128283 UTR5 Human protein_coding chr22:37962126 chr22:37962126 . . 0 21 hm6Am_associated_SNPs_9736 0 0 1 0 1 CDC42EP1 chr22:37962079 3'AG 37962079 Downstream 48bp
2605 chr16 1306281 1306281 1 + G A LUSC 1306281 + 1306261 1306301 41 TGAGGCCCGGCCAGGCCCACGATGCTCCTCCTTGCTCCCCA TGAGGCCCGGCCAGGCCCACAATGCTCCTCCTTGCTCCCCA Direct Gain 0 0.970725948114384 NA NA prediction 0.941451896228768 Functional Gain - TPSD1 ENSG00000095917 UTR5 Human protein_coding chr16:1306281 chr16:1306281 . . 0 21 hm6Am_associated_SNPs_9746 0 0 0 0 1 TPSD1 chr16:1306363 5'GT 1306363 Upstream 83bp
2606 chr1 45805947 45805947 1 - G T SARC 45805947 - 45805927 45805967 41 CTGCGGGAGCTGAAACTGCGCCATCGTCACTGTCGGCGGCC CTGCGGGAGCTGAAACTGCGACATCGTCACTGTCGGCGGCC Direct Gain 0 0.97068255665031 NA NA prediction 0.941365113300619 Functional Gain - TOE1 ENSG00000132773 CDS Human protein_coding chr1:45805947 chr1:45805947 nonsynonymous SNV 0.279 1 21 hm6Am_associated_SNPs_9767 0 0 0 0 1 MUTYH chr1:45805891 5'GT 45805891 Upstream 57bp
2607 chr17 40925462 40925462 1 + C A rs144207309 40925462 + 40925442 40925482 41 CGAAGGCCGGAAGTCCTTAGCCGGTAGCTTCCGGGTTTCCT CGAAGGCCGGAAGTCCTTAGACGGTAGCTTCCGGGTTTCCT Direct Gain 0 0.970605217952459 NA NA prediction 0.941210435904918 Functional Gain - VPS25 ENSG00000131475 UTR5 Human protein_coding chr17:40925462 chr17:40925462 . . 0 21 hm6Am_associated_SNPs_9800 0 0 1 0 1 VPS25 chr17:40925546 5'GT 40925546 Upstream 85bp
2608 chr11 61100740 61100740 1 + G A rs3892885 61100740 + 61100720 61100760 41 GATGAGAGCGCACGCTTCGGGGTCTCCGGGAAGTCGCGGCG GATGAGAGCGCACGCTTCGGAGTCTCCGGGAAGTCGCGGCG Direct Gain 0 0.970586738734573 NA NA prediction 0.941173477469147 Functional Gain - TKFC ENSG00000149476;ENSG00000167986 UTR5 Human other chr11:61100740 chr11:61100740 . . 0 21 hm6Am_associated_SNPs_9811 0 0 0 0 1 TKFC chr11:61100801 5'GT 61100801 Upstream 62bp
2609 chr11 18230711 18230711 1 + T A rs2468790 18230711 + 18230691 18230731 41 CGCGCGCGGAATCAGTTGAGTCTCTTCGGTTCCCGGCTCTT CGCGCGCGGAATCAGTTGAGACTCTTCGGTTCCCGGCTCTT Direct Gain 0 0.970586606060168 NA NA prediction 0.941173212120336 Functional Gain - LOC494141 ENSG00000189332 UTR5 Human transcribed_unprocessed_pseudogene chr11:18230711 chr11:18230711 . . 0 21 hm6Am_associated_SNPs_9812 0 0 0 0 1 LOC494141 chr11:18230740 5'GT 18230740 Upstream 30bp
2610 chr11 74303707 74303707 1 + G A SKCM 74303707 + 74303687 74303727 41 CCCAGCGCTGCCGCACCATGGCGGACCAGCTTTATCTGGAA CCCAGCGCTGCCGCACCATGACGGACCAGCTTTATCTGGAA Direct Gain 0 0.970562388008681 NA NA prediction 0.941124776017362 Functional Gain - POLD3 ENSG00000077514 CDS Human protein_coding chr11:74303707 chr11:74303707 nonsynonymous SNV 0.975 3 21 hm6Am_associated_SNPs_9822 0 0 1 0 1 POLD3 chr11:74303763 5'GT 74303763 Upstream 57bp
2611 chr2 99061457 99061457 1 + G A rs534960679 99061457 + 99061437 99061477 41 CCGCAGCCCGCGACTTCACAGCCAGGCGGCGGCGCTGCTGC CCGCAGCCCGCGACTTCACAACCAGGCGGCGGCGCTGCTGC Direct Gain 0 0.970558899211766 NA NA prediction 0.941117798423532 Functional Gain - INPP4A ENSG00000040933 UTR5 Human protein_coding chr2:99061457 chr2:99061457 . . 0 21 hm6Am_associated_SNPs_9824 0 0 1 0 1 INPP4A chr2:99061548 5'GT 99061548 Upstream 92bp
2612 chr4 95128816 95128816 1 + C A rs557524519 95128816 + 95128796 95128836 41 GGAAGGTCCCGGCACGGCTACCGTCGCCCCACGCTAGGAAA GGAAGGTCCCGGCACGGCTAACGTCGCCCCACGCTAGGAAA Direct Gain 0 0.970546929123734 NA NA prediction 0.941093858247468 Functional Gain - SMARCAD1 ENSG00000163104 UTR5 Human protein_coding chr4:95128816 chr4:95128816 . . 0 21 hm6Am_associated_SNPs_9831 0 0 1 0 1 SMARCAD1 chr4:95128886 5'GT 95128886 Upstream 71bp
2613 chr15 69453061 69453061 1 + G A rs181965352 69453061 + 69453041 69453081 41 TGTCTCCTTCTCTTCCTCAGGGCTCCCGTGTCTGCTCGCCC TGTCTCCTTCTCTTCCTCAGAGCTCCCGTGTCTGCTCGCCC Direct Gain 0 0.970540556261684 NA NA prediction 0.941081112523368 Functional Gain - MIR548H4 ENSG00000266374 ncRNA_exonic Human protein_coding chr15:69453061 chr15:69453061 . . 0 21 hm6Am_associated_SNPs_9834 0 0 1 0 1 MIR548H4 chr15:69453096 5'GT 69453096 Upstream 36bp
2614 chr19 58180499 58180499 1 + G A rs12610562 58180499 + 58180479 58180519 41 AGTGCCGTGGCGTAATCTCGGCTCACTGCAACCTCTGCCTC AGTGCCGTGGCGTAATCTCGACTCACTGCAACCTCTGCCTC Direct Gain 0 0.970529982494333 NA NA prediction 0.941059964988666 Functional Gain - ZSCAN4 ENSG00000180532 UTR5 Human protein_coding chr19:58180499 chr19:58180499 . . 0 21 hm6Am_associated_SNPs_9839 0 0 0 0 1 ZSCAN4 chr19:58180571 5'GT 58180571 Upstream 73bp
2615 chr20 56884970 56884970 1 + G A rs562362304 56884970 + 56884950 56884990 41 CGCCAGGGGATGCTCTTGCTGGGCCTGGCCTCTCCCTTCTC CGCCAGGGGATGCTCTTGCTAGGCCTGGCCTCTCCCTTCTC Direct Gain 0 0.970523859615933 NA NA prediction 0.941047719231866 Functional Gain - RAB22A ENSG00000124209 UTR5 Human protein_coding chr20:56884970 chr20:56884970 . . 0 21 hm6Am_associated_SNPs_9841 0 0 1 0 1 RAB22A chr20:56885068 5'GT 56885068 Upstream 99bp
2616 chr4 1303705 1303705 1 + G A rs149887104 1303705 + 1303685 1303725 41 GGAAAGTCCAGAAAGGCCCCGTTCCCGCGTAGAACTTGAAT GGAAAGTCCAGAAAGGCCCCATTCCCGCGTAGAACTTGAAT Direct Gain 0 0.970522672818621 NA NA prediction 0.941045345637242 Functional Gain - MAEA ENSG00000090316 UTR5 Human protein_coding chr4:1303705 chr4:1303705 . . 0 21 hm6Am_associated_SNPs_9842 0 0 0 0 1 MAEA chr4:1303784 5'GT 1303784 Upstream 80bp
2617 chr1 12916954 12916954 1 + G A rs540882941 12916954 + 12916934 12916974 41 ACTCACACCTGAAGCTACTGGTTGGTTCCCTGAGAGGTCCC ACTCACACCTGAAGCTACTGATTGGTTCCCTGAGAGGTCCC Direct Gain 0 0.970509333836014 NA NA prediction 0.941018667672028 Functional Gain - PRAMEF2 ENSG00000120952 UTR5 Human protein_coding chr1:12916954 chr1:12916954 . . 0 21 hm6Am_associated_SNPs_9848 0 0 0 0 1 PRAMEF2 chr1:12917002 5'GT 12917002 Upstream 49bp
2618 chr15 83655104 83655104 1 + T A rs74030863 83655104 + 83655084 83655124 41 GGGTTCGGCCTGAGCTGGATTGACATAGCCCTTGGCGGGTG GGGTTCGGCCTGAGCTGGATAGACATAGCCCTTGGCGGGTG Direct Gain 0 0.970457219829455 NA NA prediction 0.94091443965891 Functional Gain - FAM103A1 ENSG00000259805 ncRNA_intronic Human antisense chr15:83655104 chr15:83655104 . . 0 21 hm6Am_associated_SNPs_9869 0 0 1 0 1 FAM103A1 chr15:83655121 5'GT 83655121 Upstream 18bp
2619 chr8 59572207 59572207 1 - C T rs183027756 59572207 - 59572187 59572227 41 TGCCTGTGCGCTCTGCGCCCGCCCGCGCCTACCCTCCATGG TGCCTGTGCGCTCTGCGCCCACCCGCGCCTACCCTCCATGG Direct Gain 0 0.970448218615293 NA NA prediction 0.940896437230586 Functional Gain - NSMAF ENSG00000035681 UTR5 Human protein_coding chr8:59572207 chr8:59572207 . . 0 21 hm6Am_associated_SNPs_9872 0 0 1 0 1 NSMAF chr8:59572132 5'GT 59572132 Upstream 76bp
2620 chr5 177027184 177027184 1 + G A rs562627459 177027184 + 177027164 177027204 41 CGGCCGGGCTGCGAGCGCCTGCCCCATGCGCCGCCGCCTCT CGGCCGGGCTGCGAGCGCCTACCCCATGCGCCGCCGCCTCT Direct Gain 0 0.970367653659467 NA NA prediction 0.940735307318934 Functional Gain - B4GALT7 ENSG00000027847 UTR5 Human protein_coding chr5:177027184 chr5:177027184 . . 0 21 hm6Am_associated_SNPs_9905 0 0 1 0 1 B4GALT7 chr5:177027261 5'GT 177027261 Upstream 78bp
2621 chr11 809956 809956 1 + G A rs566417770 809956 + 809936 809976 41 GGTTTAACCCCGCCTCTTGCGTCGGCGCCTTCCTTTTCCTC GGTTTAACCCCGCCTCTTGCATCGGCGCCTTCCTTTTCCTC Direct Gain 0 0.970345980130871 NA NA prediction 0.940691960261743 Functional Gain - RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:809956 chr11:809956 . . 0 21 hm6Am_associated_SNPs_9912 0 0 1 0 1 RPLP2 chr11:810039 5'GT 810039 Upstream 84bp
2622 chr4 88896880 88896880 1 + G A rs41497449 88896880 + 88896860 88896900 41 GTCAGCAGCAGCAGGAGGAGGCAGAGCACAGCATCGTCGGG GTCAGCAGCAGCAGGAGGAGACAGAGCACAGCATCGTCGGG Direct Gain 0 0.970300706647239 NA NA prediction 0.940601413294478 Functional Gain - SPP1 ENSG00000118785 UTR5 Human protein_coding chr4:88896880 chr4:88896880 . . 0 21 hm6Am_associated_SNPs_9930 0 0 1 0 1 SPP1 chr4:88896952 5'GT 88896952 Upstream 73bp
2623 chr6 35310370 35310370 1 + G A rs202245321 35310370 + 35310350 35310390 41 CTGCGGCCGCCGCGGACCTGGGGATTAATGGGAAAAGTTTT CTGCGGCCGCCGCGGACCTGAGGATTAATGGGAAAAGTTTT Direct Gain 0 0.970275340789053 NA NA prediction 0.940550681578105 Functional Gain - PPARD ENSG00000112033 UTR5 Human protein_coding chr6:35310370 chr6:35310370 . . 0 21 hm6Am_associated_SNPs_9944 0 0 1 0 1 PPARD chr6:35310458 5'GT 35310458 Upstream 89bp
2624 chr8 124780972 124780972 1 + G A CESC 124780972 + 124780952 124780992 41 GACGTGGAGTTCCACATCCGGCACAACTACCCCTGGAACAA GACGTGGAGTTCCACATCCGACACAACTACCCCTGGAACAA Direct Gain 0 0.970273088167244 NA NA prediction 0.940546176334489 Functional Gain - FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124780972 chr8:124780972 synonymous SNV . 0 21 hm6Am_associated_SNPs_9947 0 0 1 0 1 FAM91A1 chr8:124781014 5'GT 124781014 Upstream 43bp
2625 chr1 12776279 12776279 1 + C A STAD 12776279 + 12776259 12776299 41 ATTTTTTCACTGTGCACATCCCTGCAGCGGTTGGCCACCCT ATTTTTTCACTGTGCACATCACTGCAGCGGTTGGCCACCCT Direct Gain 0 0.970263619549785 NA NA prediction 0.940527239099569 Functional Gain - AADACL3 ENSG00000188984 UTR5 Human protein_coding chr1:12776279 chr1:12776279 . 0.020 0 21 hm6Am_associated_SNPs_9951 0 0 0 0 1 AADACL3 chr1:12776347 5'GT 12776347 Upstream 69bp
2626 chr2 86426607 86426607 1 + G A rs144633929 86426607 + 86426587 86426627 41 AAGCGGCCGCCGTAGGCGAAGGTGAAGATGGCTGCCTCTGC AAGCGGCCGCCGTAGGCGAAAGTGAAGATGGCTGCCTCTGC Direct Gain 0 0.970261596908277 NA NA prediction 0.940523193816553 Functional Gain - MRPL35 ENSG00000132313 UTR5 Human protein_coding chr2:86426607 chr2:86426607 . . 0 21 hm6Am_associated_SNPs_9952 0 0 1 0 1 MRPL35 chr2:86426656 5'GT 86426656 Upstream 50bp
2627 chrX 56259174 56259174 1 + T A rs143635423 56259174 + 56259154 56259194 41 GCGGCGGTGAAGGGATCCTCTTGTGGTATCTCCTCGTGGGT GCGGCGGTGAAGGGATCCTCATGTGGTATCTCCTCGTGGGT Direct Gain 0 0.970244037449481 NA NA prediction 0.940488074898962 Functional Gain - KLF8 ENSG00000102349 UTR5 Human protein_coding chrX:56259174 chrX:56259174 . . 0 21 hm6Am_associated_SNPs_9964 0 0 0 0 1 KLF8 chrX:56259178 5'GT 56259178 Upstream 5bp
2628 chr9 34179228 34179228 1 + G A rs554073677 34179228 + 34179208 34179248 41 CTTCTGAGACGGCGGCAGCAGCGGCATTCAGGTGAGGGGGG CTTCTGAGACGGCGGCAGCAACGGCATTCAGGTGAGGGGGG Direct Gain 0 0.97023760266415 NA NA prediction 0.9404752053283 Functional Gain - UBAP1 ENSG00000165006 CDS Human protein_coding chr9:34179228 chr9:34179228 synonymous SNV . 0 21 hm6Am_associated_SNPs_9966 0 0 1 0 1 UBAP1 chr9:34179238 5'GT 34179238 Upstream 11bp
2629 chr7 23286447 23286447 1 + C A UCEC 23286447 + 23286427 23286467 41 AGAGGAATTCAGAGTTAAACCTTGAGTGCCTGCGTCCGTGA AGAGGAATTCAGAGTTAAACATTGAGTGCCTGCGTCCGTGA Direct Gain 0 0.970235176943766 NA NA prediction 0.940470353887532 Functional Gain - GPNMB ENSG00000136235 UTR5 Human protein_coding chr7:23286447 chr7:23286447 . . 0 21 hm6Am_associated_SNPs_9967 0 0 0 0 1 GPNMB chr7:23286546 5'GT 23286546 Upstream 100bp
2630 chr16 699384 699384 1 + G A rs73487415 699384 + 699364 699404 41 TACTCTGCGCTGGGCGCGCGGAGGCCTAGGCGGGAAGCTCG TACTCTGCGCTGGGCGCGCGAAGGCCTAGGCGGGAAGCTCG Direct Gain 0 0.969987084584921 NA NA prediction 0.939974169169842 Functional Gain - WDR90 ENSG00000161996 UTR5 Human protein_coding chr16:699384 chr16:699384 . . 0 21 hm6Am_associated_SNPs_10068 0 0 0 0 1 WDR90 chr16:699426 5'GT 699426 Upstream 43bp
2631 chr21 45527234 45527234 1 + C A rs182907122 45527234 + 45527214 45527254 41 TGTGGGCGGTGCCGCGCGGACCCCCGGGAAGTGTCTCTGTG TGTGGGCGGTGCCGCGCGGAACCCCGGGAAGTGTCTCTGTG Direct Gain 0 0.969939326795508 NA NA prediction 0.939878653591015 Functional Gain - PWP2 ENSG00000241945 UTR5 Human protein_coding chr21:45527234 chr21:45527234 . . 0 21 hm6Am_associated_SNPs_10087 0 0 0 0 1 PWP2 chr21:45527315 5'GT 45527315 Upstream 82bp
2632 chr9 74764537 74764537 1 + C A rs529918149 74764537 + 74764517 74764557 41 AGGGACGTTCGTCCACTCCACCTGGACCTGCCCCATGGAGG AGGGACGTTCGTCCACTCCAACTGGACCTGCCCCATGGAGG Direct Gain 0 0.969937969228479 NA NA prediction 0.939875938456958 Functional Gain - GDA ENSG00000119125 CDS Human protein_coding chr9:74764537 chr9:74764537 nonsynonymous SNV 1.000 1 21 hm6Am_associated_SNPs_10088 0 0 0 0 1 GDA chr9:74764598 5'GT 74764598 Upstream 62bp
2633 chr10 131265472 131265472 1 + C A rs561866278 131265472 + 131265452 131265492 41 CCCTCGGCCCCGCCCCCGCGCCCCGGATATGCTGGGACAGC CCCTCGGCCCCGCCCCCGCGACCCGGATATGCTGGGACAGC Direct Gain 0 0.969915332236007 NA NA prediction 0.939830664472014 Functional Gain - MGMT ENSG00000170430 UTR5 Human protein_coding chr10:131265472 chr10:131265472 . . 0 21 hm6Am_associated_SNPs_10101 0 0 0 0 1 MGMT chr10:131265560 5'GT 131265560 Upstream 89bp
2634 chr5 140019135 140019135 1 + G A UCEC 140019135 + 140019115 140019155 41 GTGGAGCCGACGGCAGGGCCGCCTCAGGCCCACGGTCTGCG GTGGAGCCGACGGCAGGGCCACCTCAGGCCCACGGTCTGCG Direct Gain 0 0.969893319270368 NA NA prediction 0.939786638540737 Functional Gain - TMCO6 ENSG00000113119 CDS Human protein_coding chr5:140019135 chr5:140019135 nonsynonymous SNV 0.015 0 21 hm6Am_associated_SNPs_10118 0 0 1 0 1 TMCO6 chr5:140019197 5'GT 140019197 Upstream 63bp
2635 chr19 54930464 54930464 1 + G A LUAD 54930464 + 54930444 54930484 41 TCACCTGGAGCTGCATTGTCGCCCTTCTCGCCGGCTGGTAA TCACCTGGAGCTGCATTGTCACCCTTCTCGCCGGCTGGTAA Direct Gain 0 0.96980936635337 NA NA prediction 0.93961873270674 Functional Gain - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54930464 chr19:54930464 nonsynonymous SNV 0.985 3 21 hm6Am_associated_SNPs_10148 0 0 0 0 1 TTYH1 chr19:54930480 5'GT 54930480 Upstream 17bp
2636 chr22 35653521 35653521 1 + T A rs554503605 35653521 + 35653501 35653541 41 ATGGCGGCGATCGGCGGCGTTGAGGCGGGATCCGGGCGAGC ATGGCGGCGATCGGCGGCGTAGAGGCGGGATCCGGGCGAGC Direct Gain 0 0.96979115472492 NA NA prediction 0.939582309449839 Functional Gain - HMGXB4 ENSG00000100281 UTR5 Human protein_coding chr22:35653521 chr22:35653521 . . 0 21 hm6Am_associated_SNPs_10156 0 0 1 0 1 HMGXB4 chr22:35653550 5'GT 35653550 Upstream 30bp
2637 chr5 64859234 64859234 1 + G A rs138622467 64859234 + 64859214 64859254 41 AACTCAGCGAAAGAGAGCTGGCAGTAGCAGTGGCGGTGTCC AACTCAGCGAAAGAGAGCTGACAGTAGCAGTGGCGGTGTCC Direct Gain 0 0.969746051769596 NA NA prediction 0.939492103539192 Functional Gain - PPWD1 ENSG00000113593 CDS Human protein_coding chr5:64859234 chr5:64859234 nonsynonymous SNV 0.009 0 21 hm6Am_associated_SNPs_10167 0 0 1 0 1 PPWD1 chr5:64859333 5'GT 64859333 Upstream 100bp
2638 chr12 69633393 69633393 1 + C A rs367612178 69633393 + 69633373 69633413 41 GCGGGCAGACCTGCAGGAGGCGGCGGCGGCGGCGGCGGCCG GCGGGCAGACCTGCAGGAGGAGGCGGCGGCGGCGGCGGCCG Direct Gain 0 0.969740595361743 NA NA prediction 0.939481190723485 Functional Gain - CPSF6 ENSG00000111605 UTR5 Human protein_coding chr12:69633393 chr12:69633393 . . 0 21 hm6Am_associated_SNPs_10169 0 0 1 0 1 CPSF6 chr12:69633486 5'GT 69633486 Upstream 94bp
2639 chr2 177134337 177134337 1 + G A rs150206716 177134337 + 177134317 177134357 41 CGTGGGGGGCAGGCACCCGGGCGCCGGGCCTCCCAGCCGAC CGTGGGGGGCAGGCACCCGGACGCCGGGCCTCCCAGCCGAC Direct Gain 0 0.969702052534933 NA NA prediction 0.939404105069866 Functional Gain - MTX2 ENSG00000128654 UTR5 Human protein_coding chr2:177134337 chr2:177134337 . . 0 21 hm6Am_associated_SNPs_10187 0 0 1 0 1 MTX2 chr2:177134397 5'GT 177134397 Upstream 61bp
2640 chr11 73588106 73588106 1 + G A UCEC 73588106 + 73588086 73588126 41 TTCAGAGCGACTGGGCGCAAGCCCTCAGGTGAATCCAGGCC TTCAGAGCGACTGGGCGCAAACCCTCAGGTGAATCCAGGCC Direct Gain 0 0.969684721450538 NA NA prediction 0.939369442901077 Functional Gain - PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73588106 chr11:73588106 nonsynonymous SNV 0.440 1 21 hm6Am_associated_SNPs_10196 0 0 1 1 1 PAAF1 chr11:73588113 5'GT 73588113 Upstream 8bp
2641 chrX 130192407 130192407 1 + G A CESC 130192407 + 130192387 130192427 41 CGCCTCGGCCTTTGAGCCCCGCCCCCGCCGTGGTGAGTGGG CGCCTCGGCCTTTGAGCCCCACCCCCGCCGTGGTGAGTGGG Direct Gain 0 0.969676981843864 NA NA prediction 0.939353963687727 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130192407 chrX:130192407 nonsynonymous SNV 1.000 3 21 hm6Am_associated_SNPs_10200 0 0 0 0 1 ARHGAP36 chrX:130192418 5'GT 130192418 Upstream 12bp
2642 chr10 112327501 112327501 1 + C A rs376252081 112327501 + 112327481 112327521 41 TGGGGGAGGGGTCGCGTAGGCGCCTCACCTGACCCTGCGGC TGGGGGAGGGGTCGCGTAGGAGCCTCACCTGACCCTGCGGC Direct Gain 0 0.969632799441425 NA NA prediction 0.939265598882851 Functional Gain - SMC3 ENSG00000108055 UTR5 Human protein_coding chr10:112327501 chr10:112327501 . . 0 21 hm6Am_associated_SNPs_10223 1 0 1 0 1 SMC3 chr10:112327589 5'GT 112327589 Upstream 89bp
2643 chr9 36037044 36037044 1 + G A rs139893051 36037044 + 36037024 36037064 41 GTGCGCTGCTCCTTCTGCTGGCCGTGGCGGGGGTCGCGGAG GTGCGCTGCTCCTTCTGCTGACCGTGGCGGGGGTCGCGGAG Direct Gain 0 0.969548013638118 NA NA prediction 0.939096027276237 Functional Gain - RECK ENSG00000122707 CDS Human protein_coding chr9:36037044 chr9:36037044 nonsynonymous SNV 0.997 0 21 hm6Am_associated_SNPs_10258 0 0 1 0 1 RECK chr9:36037095 5'GT 36037095 Upstream 52bp
2644 chr2 233321153 233321153 1 + C A rs566739473 233321153 + 233321133 233321173 41 ATCCAGAAGGTCGCCAAGAACCTCATCCTCTTCCTGGGCGA ATCCAGAAGGTCGCCAAGAAACTCATCCTCTTCCTGGGCGA Direct Gain 0 0.969532457057489 NA NA prediction 0.939064914114978 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233321153 chr2:233321153 nonsynonymous SNV 0.999 5 21 hm6Am_associated_SNPs_10268 0 0 1 0 2 ALPI chr2:233321059 3'AG 233321059 Downstream 95bp
2645 chr2 233321153 233321153 1 + C A rs566739473 233321153 + 233321133 233321173 41 ATCCAGAAGGTCGCCAAGAACCTCATCCTCTTCCTGGGCGA ATCCAGAAGGTCGCCAAGAAACTCATCCTCTTCCTGGGCGA Direct Gain 0 0.969532457057489 NA NA prediction 0.939064914114978 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233321153 chr2:233321153 nonsynonymous SNV 0.999 5 21 hm6Am_associated_SNPs_10268 0 0 1 0 2 ALPI chr2:233321175 5'GT 233321175 Upstream 23bp
2646 chr1 233086456 233086456 1 + T A rs13381 233086456 + 233086436 233086476 41 CCCCTACCCCCGCCCACCAGTATGGCCCGGCACGTGTTCCT CCCCTACCCCCGCCCACCAGAATGGCCCGGCACGTGTTCCT Direct Gain 0 0.969531147239499 NA NA prediction 0.939062294478999 Functional Gain - NTPCR ENSG00000135778 UTR5 Human protein_coding chr1:233086456 chr1:233086456 . . 0 21 hm6Am_associated_SNPs_10269 0 0 1 0 1 NTPCR chr1:233086490 5'GT 233086490 Upstream 35bp
2647 chr6 30312945 30312945 1 + G A rs371403510 30312945 + 30312925 30312965 41 GGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGTGAA GGGAGGCCCTGGAGCGCGGCAGTGATGGCGGGGCCGGTGAA Direct Gain 0 0.969517515104648 NA NA prediction 0.939035030209297 Functional Gain - RPP21 ENSG00000241370 UTR5 Human protein_coding chr6:30312945 chr6:30312945 . . 0 21 hm6Am_associated_SNPs_10272 0 0 1 0 1 RPP21 chr6:30313005 5'GT 30313005 Upstream 61bp
2648 chr11 126141470 126141470 1 + G A UCEC 126141470 + 126141450 126141490 41 CGTGGGAGGTGGGGTGCTTGGCTTGTCTGTGGCCTATTGGC CGTGGGAGGTGGGGTGCTTGACTTGTCTGTGGCCTATTGGC Direct Gain 0 0.96940745732857 NA NA prediction 0.938814914657139 Functional Gain - FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126141470 chr11:126141470 nonsynonymous SNV 0.724 5 21 hm6Am_associated_SNPs_10313 0 0 1 0 1 FOXRED1 chr11:126141552 5'GT 126141552 Upstream 83bp
2649 chr1 229762016 229762016 1 + G A rs539026816 229762016 + 229761996 229762036 41 ACAGCGGCCTCCGCCGCACCGGGACAGCAGCCGCCGCCGCT ACAGCGGCCTCCGCCGCACCAGGACAGCAGCCGCCGCCGCT Direct Gain 0 0.969375908711578 NA NA prediction 0.938751817423156 Functional Gain - URB2 ENSG00000135763 UTR5 Human protein_coding chr1:229762016 chr1:229762016 . . 0 21 hm6Am_associated_SNPs_10326 0 0 1 0 1 URB2 chr1:229762103 5'GT 229762103 Upstream 88bp
2650 chr14 23938924 23938924 1 + G A LUAD 23938924 + 23938904 23938944 41 GAAGGGGTGGGCTTTGCGAAGATGGCGGCGCTGGTGAGTTT GAAGGGGTGGGCTTTGCGAAAATGGCGGCGCTGGTGAGTTT Direct Gain 0 0.969341935380725 NA NA prediction 0.93868387076145 Functional Gain - NGDN ENSG00000129460 UTR5 Human protein_coding chr14:23938924 chr14:23938924 . . 0 21 hm6Am_associated_SNPs_10345 0 0 1 0 1 NGDN chr14:23938936 5'GT 23938936 Upstream 13bp
2651 chr9 131549631 131549631 1 + C A rs558789158 131549631 + 131549611 131549651 41 GGGGGGTCCGGAAGTCAACACCATGTCAAGTCTGCACAAGA GGGGGGTCCGGAAGTCAACAACATGTCAAGTCTGCACAAGA Direct Gain 0 0.96931209901454 NA NA prediction 0.938624198029079 Functional Gain - TBC1D13 ENSG00000107021 UTR5 Human protein_coding chr9:131549631 chr9:131549631 . . 0 21 hm6Am_associated_SNPs_10350 0 0 1 0 1 TBC1D13 chr9:131549655 5'GT 131549655 Upstream 25bp
2652 chr12 72233587 72233587 1 + G A SKCM 72233587 + 72233567 72233607 41 GGCGGCGGGTGTTGTGAGCGGGAAGGTAGGTAACGGCCTCC GGCGGCGGGTGTTGTGAGCGAGAAGGTAGGTAACGGCCTCC Direct Gain 0 0.969298761941478 NA NA prediction 0.938597523882956 Functional Gain - TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72233587 chr12:72233587 nonsynonymous SNV 1.000 0 21 hm6Am_associated_SNPs_10356 0 0 1 0 1 TBC1D15 chr12:72233591 5'GT 72233591 Upstream 5bp
2653 chr12 93965611 93965611 1 + C A rs530629473 93965611 + 93965591 93965631 41 CCCCTCCCACCTCCCCTTTTCCCCCCACCCCCCCGCCCCAT CCCCTCCCACCTCCCCTTTTACCCCCACCCCCCCGCCCCAT Direct Gain 0 0.969044187227502 NA NA prediction 0.938088374455005 Functional Gain - SOCS2 ENSG00000120833 UTR5 Human protein_coding chr12:93965611 chr12:93965611 . . 0 21 hm6Am_associated_SNPs_10453 0 0 0 0 1 SOCS2 chr12:93965690 5'GT 93965690 Upstream 80bp
2654 chr11 64981819 64981819 1 + G A COAD 64981819 + 64981799 64981839 41 GGATCTGGTGTGTGAGGCCCGCACTCTCCGAGACCTGGCGC GGATCTGGTGTGTGAGGCCCACACTCTCCGAGACCTGGCGC Direct Gain 0 0.969021803694478 NA NA prediction 0.938043607388956 Functional Gain - SLC22A20 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:64981819 chr11:64981819 . . 0 21 hm6Am_associated_SNPs_10461 0 0 0 0 2 SLC22A20 chr11:64981797 3'AG 64981797 Downstream 23bp
2655 chr11 64981819 64981819 1 + G A COAD 64981819 + 64981799 64981839 41 GGATCTGGTGTGTGAGGCCCGCACTCTCCGAGACCTGGCGC GGATCTGGTGTGTGAGGCCCACACTCTCCGAGACCTGGCGC Direct Gain 0 0.969021803694478 NA NA prediction 0.938043607388956 Functional Gain - SLC22A20 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:64981819 chr11:64981819 . . 0 21 hm6Am_associated_SNPs_10461 0 0 0 0 2 SLC22A20 chr11:64981900 5'GT 64981900 Upstream 82bp
2656 chr12 56367906 56367906 1 + G A rs537229493 56367906 + 56367886 56367926 41 ACACAGGCTTGGGGCCGACGGGGGAGACGGAGCCCCAGGTA ACACAGGCTTGGGGCCGACGAGGGAGACGGAGCCCCAGGTA Direct Gain 0 0.969002794450009 NA NA prediction 0.938005588900018 Functional Gain - RAB5B ENSG00000111540 UTR5 Human protein_coding chr12:56367906 chr12:56367906 . . 0 21 hm6Am_associated_SNPs_10467 0 0 1 0 1 RAB5B chr12:56367923 5'GT 56367923 Upstream 18bp
2657 chr11 93394906 93394906 1 + G A ESCA 93394906 + 93394886 93394926 41 ACCAGGCTGGCTTGCTCTGAGCTGCGGTTACTGTGTCCAGG ACCAGGCTGGCTTGCTCTGAACTGCGGTTACTGTGTCCAGG Direct Gain 0 0.968982448352842 NA NA prediction 0.937964896705683 Functional Gain - CEP295 ENSG00000166004 UTR5 Human protein_coding chr11:93394906 chr11:93394906 . . 0 21 hm6Am_associated_SNPs_10479 0 0 1 0 1 CEP295 chr11:93394940 5'GT 93394940 Upstream 35bp
2658 chr4 53351 53351 1 + G A rs552438644 53351 + 53331 53371 41 AGGGTATTGGACAATTTGTAGCTAAGACTCCCGGATACCCT AGGGTATTGGACAATTTGTAACTAAGACTCCCGGATACCCT Direct Gain 0 0.968968896556193 NA NA prediction 0.937937793112386 Functional Gain - ZNF595;ZNF718 ENSG00000197701 UTR5 Human other chr4:53351 chr4:53351 . . 0 21 hm6Am_associated_SNPs_10482 0 0 1 0 1 ZNF595;ZNF718 chr4:53385 5'GT 53385 Upstream 35bp
2659 chr1 161136683 161136683 1 + G A STAD 161136683 + 161136663 161136703 41 GCGGAGGCATCAGCGGCTTGGCCGCCAGTTACCACCTGAGC GCGGAGGCATCAGCGGCTTGACCGCCAGTTACCACCTGAGC Direct Gain 0 0.968924134035244 NA NA prediction 0.937848268070489 Functional Gain - PPOX ENSG00000143224 CDS Human protein_coding chr1:161136683 chr1:161136683 nonsynonymous SNV 0.995 2 21 hm6Am_associated_SNPs_10498 0 0 1 0 2 PPOX chr1:161136630 3'AG 161136630 Downstream 54bp
2660 chr1 161136683 161136683 1 + G A STAD 161136683 + 161136663 161136703 41 GCGGAGGCATCAGCGGCTTGGCCGCCAGTTACCACCTGAGC GCGGAGGCATCAGCGGCTTGACCGCCAGTTACCACCTGAGC Direct Gain 0 0.968924134035244 NA NA prediction 0.937848268070489 Functional Gain - PPOX ENSG00000143224 CDS Human protein_coding chr1:161136683 chr1:161136683 nonsynonymous SNV 0.995 2 21 hm6Am_associated_SNPs_10498 0 0 1 0 2 PPOX chr1:161136724 5'GT 161136724 Upstream 42bp
2661 chr19 48972719 48972719 1 + G A rs564552690 48972719 + 48972699 48972739 41 GCCAACGCGGATCCAGGCCCGACTGGCGGGACCGCCCCGGA GCCAACGCGGATCCAGGCCCAACTGGCGGGACCGCCCCGGA Direct Gain 0 0.968889699062256 NA NA prediction 0.937779398124511 Functional Gain - CYTH2 ENSG00000268530 ncRNA_exonic Human protein_coding chr19:48972719 chr19:48972719 . . 0 21 hm6Am_associated_SNPs_10515 0 0 1 0 1 CYTH2 chr19:48972783 5'GT 48972783 Upstream 65bp
2662 chr8 144099996 144099996 1 + G A rs546721323 144099996 + 144099976 144100016 41 GGCTGCTGGTACCTGCGTCCGCCCGGCGGTGAGTCCGCGGG GGCTGCTGGTACCTGCGTCCACCCGGCGGTGAGTCCGCGGG Direct Gain 0 0.968886999646593 NA NA prediction 0.937773999293185 Functional Gain - LY6E ENSG00000160932 UTR5 Human protein_coding chr8:144099996 chr8:144099996 . . 0 21 hm6Am_associated_SNPs_10516 0 0 1 0 1 LY6E chr8:144100003 5'GT 144100003 Upstream 8bp
2663 chr16 90160821 90160821 1 + G A rs566554762 90160821 + 90160801 90160841 41 CACGGGGACAGCCACCTGCCGCTGGAGCGCGTCAACGTGCA CACGGGGACAGCCACCTGCCACTGGAGCGCGTCAACGTGCA Direct Gain 0 0.968872563829995 NA NA prediction 0.93774512765999 Functional Gain - PRDM7;FAM157B ENSG00000261812 CDS Human transcribed_unprocessed_pseudogene chr16:90160821 chr16:90160821 unknown . 0 21 hm6Am_associated_SNPs_10521 0 0 0 0 2 PRDM7;FAM157B chr16:90160750 3'AG 90160750 Downstream 72bp
2664 chr16 90160821 90160821 1 + G A rs566554762 90160821 + 90160801 90160841 41 CACGGGGACAGCCACCTGCCGCTGGAGCGCGTCAACGTGCA CACGGGGACAGCCACCTGCCACTGGAGCGCGTCAACGTGCA Direct Gain 0 0.968872563829995 NA NA prediction 0.93774512765999 Functional Gain - PRDM7;FAM157B ENSG00000261812 CDS Human transcribed_unprocessed_pseudogene chr16:90160821 chr16:90160821 unknown . 0 21 hm6Am_associated_SNPs_10521 0 0 0 0 2 PRDM7;FAM157B chr16:90160858 5'GT 90160858 Upstream 38bp
2665 chr4 159131676 159131676 1 + C A rs78910344 159131676 + 159131656 159131696 41 GCTCCGGCTCCACACTGGCACGTAGTGGGCGGATCGCGCCG GCTCCGGCTCCACACTGGCAAGTAGTGGGCGGATCGCGCCG Direct Gain 0 0.968862398340358 NA NA prediction 0.937724796680716 Functional Gain - TMEM144 ENSG00000164124 UTR5 Human protein_coding chr4:159131676 chr4:159131676 . . 0 21 hm6Am_associated_SNPs_10523 0 0 1 0 1 TMEM144 chr4:159131738 5'GT 159131738 Upstream 63bp
2666 chr9 131133656 131133656 1 + C A rs201029924 131133656 + 131133636 131133676 41 TCCTGCGAGCTCGGCTTCCTCAACATGGCTGCGCCCTTGTC TCCTGCGAGCTCGGCTTCCTAAACATGGCTGCGCCCTTGTC Direct Gain 0 0.968837398636972 NA NA prediction 0.937674797273944 Functional Gain - MIR1268A ENSG00000167118 UTR5 Human protein_coding chr9:131133656 chr9:131133656 . . 0 21 hm6Am_associated_SNPs_10532 0 0 1 0 1 URM1 chr9:131133694 5'GT 131133694 Upstream 39bp
2667 chr1 121107166 121107166 1 + G A rs587664999 121107166 + 121107146 121107186 41 CCTTGCAGAGTAAAGAAGTCGGCCAGCAGCTCCAAGATGAT CCTTGCAGAGTAAAGAAGTCAGCCAGCAGCTCCAAGATGAT Direct Gain 0 0.968828368380043 NA NA prediction 0.937656736760087 Functional Gain - SRGAP2B;SRGAP2C ENSG00000171943 ncRNA_exonic Human protein_coding chr1:121107166 chr1:121107166 . 0.998 0 21 hm6Am_associated_SNPs_10536 0 0 0 0 1 SRGAP2B;SRGAP2C chr1:121107216 5'GT 121107216 Upstream 51bp
2668 chr4 186990345 186990345 1 + C A rs5743309 186990345 + 186990325 186990365 41 GTCTATTTGCCACACACTTCCCTGATGAAATGTCTGGATTT GTCTATTTGCCACACACTTCACTGATGAAATGTCTGGATTT Direct Gain 0 0.968814815943028 NA NA prediction 0.937629631886056 Functional Gain - TLR3 ENSG00000164342 UTR5 Human protein_coding chr4:186990345 chr4:186990345 . . 0 21 hm6Am_associated_SNPs_10551 0 0 0 0 1 TLR3 chr4:186990402 5'GT 186990402 Upstream 58bp
2669 chr8 94929402 94929402 1 + G A rs186315844 94929402 + 94929382 94929422 41 CCGGGCGTGCTCGCGGATCGGCGGCCGCGGGCGTGCGGAGG CCGGGCGTGCTCGCGGATCGACGGCCGCGGGCGTGCGGAGG Direct Gain 0 0.968778605123121 NA NA prediction 0.937557210246242 Functional Gain - PDP1 ENSG00000164951 UTR5 Human protein_coding chr8:94929402 chr8:94929402 . . 0 21 hm6Am_associated_SNPs_10567 0 0 0 0 1 PDP1 chr8:94929446 5'GT 94929446 Upstream 45bp
2670 chr16 30206014 30206014 1 + G A UCEC 30206014 + 30205994 30206034 41 GGGATTGGAGGGGACCCGCGGCTGAGGCGCTGGGCTGCGAC GGGATTGGAGGGGACCCGCGACTGAGGCGCTGGGCTGCGAC Direct Gain 0 0.96877287989008 NA NA prediction 0.93754575978016 Functional Gain - SLX1A-SULT1A3;SLX1B-SULT1A4 ENSG00000213599 ncRNA_exonic Human protein_coding chr16:30206014 chr16:30206014 . . 0 21 hm6Am_associated_SNPs_10573 0 0 1 0 1 SLX1A;SLX1B chr16:30206112 5'GT 30206112 Upstream 99bp
2671 chr13 21277574 21277574 1 + G A rs12867345 21277574 + 21277554 21277594 41 CTCAGTCGGCTTCTCGGTCCGAGTCCCCGGGTACGAGGAAA CTCAGTCGGCTTCTCGGTCCAAGTCCCCGGGTACGAGGAAA Direct Gain 0 0.968757482753369 NA NA prediction 0.937514965506738 Functional Gain - IL17D ENSG00000172458 UTR5 Human protein_coding chr13:21277574 chr13:21277574 . . 0 21 hm6Am_associated_SNPs_10584 0 0 0 0 1 IL17D chr13:21277583 5'GT 21277583 Upstream 10bp
2672 chr19 45909934 45909934 1 + G A rs967591 45909934 + 45909914 45909954 41 GCAGCCCGGGCTACAGGGTTGCCTGAGGTGTGGGTCCCAGG GCAGCCCGGGCTACAGGGTTACCTGAGGTGTGGGTCCCAGG Direct Gain 0 0.968670166195671 NA NA prediction 0.937340332391342 Functional Gain - CD3EAP ENSG00000117877 UTR5 Human protein_coding chr19:45909934 chr19:45909934 . . 0 21 hm6Am_associated_SNPs_10628 0 0 1 0 1 CD3EAP chr19:45909976 5'GT 45909976 Upstream 43bp
2673 chr2 61244888 61244888 1 + G A rs200847026 61244888 + 61244868 61244908 41 AGCGGGAGCCGAGAGGAGGCGGAGGAGATGGCGTCCCAGCC AGCGGGAGCCGAGAGGAGGCAGAGGAGATGGCGTCCCAGCC Direct Gain 0 0.968629844530092 NA NA prediction 0.937259689060185 Functional Gain - PEX13 ENSG00000162928 UTR5 Human protein_coding chr2:61244888 chr2:61244888 . . 0 21 hm6Am_associated_SNPs_10643 0 0 1 0 1 PEX13 chr2:61244986 5'GT 61244986 Upstream 99bp
2674 chr7 73442509 73442509 1 + C A rs541115449 73442509 + 73442489 73442529 41 GAGAGCGGGCTGGGGCATTTCTCCCCGAGATGGCGGGTCTG GAGAGCGGGCTGGGGCATTTATCCCCGAGATGGCGGGTCTG Direct Gain 0 0.968575871103905 NA NA prediction 0.937151742207809 Functional Gain - ELN ENSG00000049540 UTR5 Human protein_coding chr7:73442509 chr7:73442509 . . 0 21 hm6Am_associated_SNPs_10663 0 0 0 0 1 ELN chr7:73442599 5'GT 73442599 Upstream 91bp
2675 chr11 64981693 64981693 1 + G A UCEC 64981693 + 64981673 64981713 41 GGACGGCTGGGTCTATAACCGCAGTGTTTTCCCGTCCACCA GGACGGCTGGGTCTATAACCACAGTGTTTTCCCGTCCACCA Direct Gain 0 0.968558591726317 NA NA prediction 0.937117183452635 Functional Gain - SLC22A20 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:64981693 chr11:64981693 . . 0 21 hm6Am_associated_SNPs_10670 0 0 0 0 1 SLC22A20 chr11:64981724 5'GT 64981724 Upstream 32bp
2676 chr14 31494988 31494988 1 + G A rs78648016 31494988 + 31494968 31495008 41 GGACCATCACAACCTGAGCAGCACAGGTAGGTTCCGCTCGG GGACCATCACAACCTGAGCAACACAGGTAGGTTCCGCTCGG Direct Gain 0 0.968500519509067 NA NA prediction 0.937001039018135 Functional Gain - AP4S1 ENSG00000100478 UTR5 Human protein_coding chr14:31494988 chr14:31494988 . . 0 21 hm6Am_associated_SNPs_10692 1 0 1 0 1 AP4S1 chr14:31494993 5'GT 31494993 Upstream 6bp
2677 chr11 61976201 61976201 1 + G A rs116252301 61976201 + 61976181 61976221 41 ACACAGACAGCAGCCGCCTCGCCATGAAGCTGCTGATGGTC ACACAGACAGCAGCCGCCTCACCATGAAGCTGCTGATGGTC Direct Gain 0 0.968491187094537 NA NA prediction 0.936982374189074 Functional Gain - SCGB2A1 ENSG00000124939 UTR5 Human protein_coding chr11:61976201 chr11:61976201 . . 0 21 hm6Am_associated_SNPs_10697 0 0 0 0 1 SCGB2A1 chr11:61976258 5'GT 61976258 Upstream 58bp
2678 chr3 8543601 8543601 1 + G A rs74997575 8543601 + 8543581 8543621 41 CTCTGCCTGAGAAGCCAGGCGCTGTTCCCCCACCCCAGAAG CTCTGCCTGAGAAGCCAGGCACTGTTCCCCCACCCCAGAAG Direct Gain 0 0.968475074117052 NA NA prediction 0.936950148234105 Functional Gain - LMCD1 ENSG00000227110 ncRNA_intronic Human protein_coding chr3:8543601 chr3:8543601 . . 0 21 hm6Am_associated_SNPs_10705 0 0 0 0 1 LMCD1 chr3:8543666 5'GT 8543666 Upstream 66bp
2679 chr16 72821612 72821612 1 + G A STAD 72821612 + 72821592 72821632 41 GAGCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCC GAGCCGCCGCCGCCGCCGCCACCGCCACCGCCGCCGCCGCC Direct Gain 0 0.968459619697792 NA NA prediction 0.936919239395585 Functional Gain - ZFHX3 ENSG00000140836 CDS Human protein_coding chr16:72821612 chr16:72821612 synonymous SNV . 0 21 hm6Am_associated_SNPs_10712 0 0 1 0 1 ZFHX3 chr16:72821562 3'AG 72821562 Downstream 51bp
2680 chr15 89911387 89911387 1 + G A rs561921208 89911387 + 89911367 89911407 41 CGACCGCCCCGGCCCGGCCCGCAAGAGCCAGAGGAGCCGAG CGACCGCCCCGGCCCGGCCCACAAGAGCCAGAGGAGCCGAG Direct Gain 0 0.968451257672136 NA NA prediction 0.936902515344272 Functional Gain - MIR9-3HG ENSG00000255571 ncRNA_intronic Human lincRNA chr15:89911387 chr15:89911387 . . 0 21 hm6Am_associated_SNPs_10719 0 0 0 0 1 MIR9-3HG chr15:89911466 5'GT 89911466 Upstream 80bp
2681 chr19 7974676 7974676 1 + G A rs533357050 7974676 + 7974656 7974696 41 GGCCAACGATGGGGGCAGCCGCTCGCCATCCTCAGAGAGCT GGCCAACGATGGGGGCAGCCACTCGCCATCCTCAGAGAGCT Direct Gain 0 0.968449782720425 NA NA prediction 0.936899565440851 Functional Gain - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7974676 chr19:7974676 nonsynonymous SNV 0.997 3 21 hm6Am_associated_SNPs_10720 0 0 1 0 1 MAP2K7 chr19:7974640 3'AG 7974640 Downstream 37bp
2682 chr11 13690316 13690316 1 + G A rs560935878 13690316 + 13690296 13690336 41 CGGCGCAGCTATTGCTGGACGGCCAGTGGGAGAGCGAGGCC CGGCGCAGCTATTGCTGGACAGCCAGTGGGAGAGCGAGGCC Direct Gain 0 0.968360637170073 NA NA prediction 0.936721274340145 Functional Gain - FAR1 ENSG00000197601 UTR5 Human protein_coding chr11:13690316 chr11:13690316 . . 0 21 hm6Am_associated_SNPs_10764 0 0 1 0 1 FAR1 chr11:13690353 5'GT 13690353 Upstream 38bp
2683 chr19 44556291 44556291 1 + G A rs17656836 44556291 + 44556271 44556311 41 CTTGAGGCTCGCAACCACCCGATGATCGATGATCGTCTCAG CTTGAGGCTCGCAACCACCCAATGATCGATGATCGTCTCAG Direct Gain 0 0.968355614641329 NA NA prediction 0.936711229282659 Functional Gain - ZNF223 ENSG00000178386 UTR5 Human protein_coding chr19:44556291 chr19:44556291 . . 0 21 hm6Am_associated_SNPs_10766 0 0 1 0 1 ZNF223 chr19:44556348 5'GT 44556348 Upstream 58bp
2684 chr16 74330833 74330833 1 + G A CESC 74330833 + 74330813 74330853 41 ATGCCGGAGCTGGCAGTGCAGAAGGTGGTGGTCCACCCCCT ATGCCGGAGCTGGCAGTGCAAAAGGTGGTGGTCCACCCCCT Direct Gain 0 0.968340616161772 NA NA prediction 0.936681232323545 Functional Gain - PSMD7 ENSG00000103035 CDS Human protein_coding chr16:74330833 chr16:74330833 synonymous SNV . 0 21 hm6Am_associated_SNPs_10772 0 0 1 0 1 PSMD7 chr16:74330886 5'GT 74330886 Upstream 54bp
2685 chr1 9005931 9005931 1 + C A rs75823497 9005931 + 9005911 9005951 41 GCCGGAATCAGTCTTCATTACAGATGTGCAGCACCATGAGG GCCGGAATCAGTCTTCATTAAAGATGTGCAGCACCATGAGG Direct Gain 0 0.9683227080613 NA NA prediction 0.936645416122601 Functional Gain - CA6 ENSG00000131686 UTR5 Human protein_coding chr1:9005931 chr1:9005931 . . 0 21 hm6Am_associated_SNPs_10784 0 0 0 0 1 CA6 chr1:9006024 5'GT 9006024 Upstream 94bp
2686 chr12 108956449 108956449 1 + G A rs112552261 108956449 + 108956429 108956469 41 CGGGCGGCATCGGCTCTGCTGCTGCGGAGCCCCCGCCTGCC CGGGCGGCATCGGCTCTGCTACTGCGGAGCCCCCGCCTGCC Direct Gain 0 0.968272864614386 NA NA prediction 0.936545729228772 Functional Gain - ISCU ENSG00000136003 CDS Human protein_coding chr12:108956449 chr12:108956449 synonymous SNV . 0 21 hm6Am_associated_SNPs_10804 1 0 1 0 1 ISCU chr12:108956512 5'GT 108956512 Upstream 64bp
2687 chr15 74833631 74833631 1 + C A rs537729842 74833631 + 74833611 74833651 41 CGCGCCGGGGCCTGAGCTGCCGCCTCCTCCGCCGCCCGAAA CGCGCCGGGGCCTGAGCTGCAGCCTCCTCCGCCGCCCGAAA Direct Gain 0 0.968249766066804 NA NA prediction 0.936499532133607 Functional Gain - ARID3B ENSG00000179361 UTR5 Human protein_coding chr15:74833631 chr15:74833631 . . 0 21 hm6Am_associated_SNPs_10816 0 0 1 0 1 ARID3B chr15:74833671 5'GT 74833671 Upstream 41bp
2688 chr1 27671805 27671805 1 + G A COAD 27671805 + 27671785 27671825 41 CAGGAAGCTCCGTGTGCCCAGCTGGGGCACAGCCCCAGCTG CAGGAAGCTCCGTGTGCCCAACTGGGGCACAGCCCCAGCTG Direct Gain 0 0.96823522123881 NA NA prediction 0.936470442477619 Functional Gain - SYTL1 ENSG00000142765 UTR5 Human protein_coding chr1:27671805 chr1:27671805 . . 0 21 hm6Am_associated_SNPs_10824 0 0 1 0 1 SYTL1 chr1:27671788 3'AG 27671788 Downstream 18bp
2689 chr11 62186530 62186530 1 + G A rs41364547 62186530 + 62186510 62186550 41 AGCCCACCAGACTCAGAGACGGAACCAGAGACGGGCCAGAG AGCCCACCAGACTCAGAGACAGAACCAGAGACGGGCCAGAG Direct Gain 0 0.968193694567921 NA NA prediction 0.936387389135843 Functional Gain - SCGB1A1 ENSG00000149021 UTR5 Human protein_coding chr11:62186530 chr11:62186530 . . 0 21 hm6Am_associated_SNPs_10841 1 0 0 0 1 SCGB1A1 chr11:62186622 5'GT 62186622 Upstream 93bp
2690 chr10 105156428 105156428 1 + G A rs575029889 105156428 + 105156408 105156448 41 CTGTGGGTATCCTGGTCTCCGCGTGTGTGAGTACCGCGGCG CTGTGGGTATCCTGGTCTCCACGTGTGTGAGTACCGCGGCG Direct Gain 0 0.968091785440515 NA NA prediction 0.936183570881029 Functional Gain - PDCD11 ENSG00000148843 UTR5 Human protein_coding chr10:105156428 chr10:105156428 . . 0 21 hm6Am_associated_SNPs_10891 0 0 1 0 1 PDCD11 chr10:105156487 5'GT 105156487 Upstream 60bp
2691 chr11 560975 560975 1 + G A rs538961426 560975 + 560955 560995 41 GGGCCCGGGTGCGCCGCGGCGCTGGGGGCGGCAGGTTGCGG GGGCCCGGGTGCGCCGCGGCACTGGGGGCGGCAGGTTGCGG Direct Gain 0 0.968071795712359 NA NA prediction 0.936143591424718 Functional Gain - RASSF7 ENSG00000099849 UTR5 Human protein_coding chr11:560975 chr11:560975 . . 0 21 hm6Am_associated_SNPs_10902 0 0 0 0 1 RASSF7 chr11:561033 5'GT 561033 Upstream 59bp
2692 chr18 44013236 44013236 1 + G A STAD 44013236 + 44013216 44013256 41 CCCCGCAGCCGCAGCAGCTCGCTCCCGACTTCCCGCTGGCC CCCCGCAGCCGCAGCAGCTCACTCCCGACTTCCCGCTGGCC Direct Gain 0 0.967965264381701 NA NA prediction 0.935930528763403 Functional Gain - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44013236 chr18:44013236 nonsynonymous SNV 0.963 0 21 hm6Am_associated_SNPs_10938 0 0 0 0 1 RNF165 chr18:44013153 3'AG 44013153 Downstream 84bp
2693 chr5 10442029 10442029 1 + G A rs528290328 10442029 + 10442009 10442049 41 TACCGAGCGCGTCCGTAGTGGCGGCTGGCGCTAGGGAACTG TACCGAGCGCGTCCGTAGTGACGGCTGGCGCTAGGGAACTG Direct Gain 0 0.967931663715528 NA NA prediction 0.935863327431055 Functional Gain - ROPN1L ENSG00000145491 UTR5 Human protein_coding chr5:10442029 chr5:10442029 . . 0 21 hm6Am_associated_SNPs_10948 0 0 0 0 1 ROPN1L chr5:10442115 5'GT 10442115 Upstream 87bp
2694 chr12 117013728 117013728 1 + G A rs374196587 117013728 + 117013708 117013748 41 ACCCTCGCGTCGTCGCCGCCGCGGCCCAGATCCCCACACCA ACCCTCGCGTCGTCGCCGCCACGGCCCAGATCCCCACACCA Direct Gain 0 0.967911644266439 NA NA prediction 0.935823288532878 Functional Gain - MAP1LC3B2 ENSG00000171471 UTR5 Human other chr12:117013728 chr12:117013728 . . 0 21 hm6Am_associated_SNPs_10962 0 0 0 0 1 MAP1LC3B2 chr12:117013647 3'AG 117013647 Downstream 82bp
2695 chr1 33283287 33283287 1 + G A rs115959445 33283287 + 33283267 33283307 41 CAGGCTTTGGCCCGGCTTCCGGAGGTGAAGAGCGGGAGGGA CAGGCTTTGGCCCGGCTTCCAGAGGTGAAGAGCGGGAGGGA Direct Gain 0 0.967897001059118 NA NA prediction 0.935794002118236 Functional Gain - S100PBP;YARS ENSG00000116497;ENSG00000134684 UTR5 Human other chr1:33283287 chr1:33283287 . . 0 21 hm6Am_associated_SNPs_10969 1 0 1 0 1 S100PBP;YARS chr1:33283290 5'GT 33283290 Upstream 4bp
2696 chr16 30075063 30075063 1 + G A UCEC 30075063 + 30075043 30075083 41 CCCTCAGGACTGGGCACCTCGCTGCCCCCGCTGCTGCCCAC CCCTCAGGACTGGGCACCTCACTGCCCCCGCTGCTGCCCAC Direct Gain 0 0.967823803370828 NA NA prediction 0.935647606741656 Functional Gain - ALDOA ENSG00000149925 UTR5 Human protein_coding chr16:30075063 chr16:30075063 . . 0 21 hm6Am_associated_SNPs_10999 0 0 1 0 1 ALDOA chr16:30075050 3'AG 30075050 Downstream 14bp
2697 chr1 25664944 25664944 1 + G A rs187950680 25664944 + 25664924 25664964 41 AACCACTGCACGACGGGGCTGGACGTAAGTGTCGGGCGGGG AACCACTGCACGACGGGGCTAGACGTAAGTGTCGGGCGGGG Direct Gain 0 0.96779036692261 NA NA prediction 0.935580733845221 Functional Gain - TMEM50A ENSG00000183726 UTR5 Human protein_coding chr1:25664944 chr1:25664944 . . 0 21 hm6Am_associated_SNPs_11015 0 0 1 1 1 TMEM50A chr1:25664947 5'GT 25664947 Upstream 4bp
2698 chr19 42351835 42351835 1 + G A UCEC 42351835 + 42351815 42351855 41 GGGTCATGGCTGCCCAGGTGGCCTTGCGTAGGCAGCAGGAG GGGTCATGGCTGCCCAGGTGACCTTGCGTAGGCAGCAGGAG Direct Gain 0 0.967788913694082 NA NA prediction 0.935577827388165 Functional Gain - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42351835 chr19:42351835 nonsynonymous SNV 1.000 3 21 hm6Am_associated_SNPs_11017 0 0 0 0 1 DMRTC2 chr19:42351804 3'AG 42351804 Downstream 32bp
2699 chr2 128848884 128848884 1 + G A rs149017250 128848884 + 128848864 128848904 41 CTGCCGCCTCGCCCCGCCCTGCCCTGGCGTTGTCTCTGGCA CTGCCGCCTCGCCCCGCCCTACCCTGGCGTTGTCTCTGGCA Direct Gain 0 0.96775934947891 NA NA prediction 0.93551869895782 Functional Gain - UGGT1 ENSG00000136731 UTR5 Human protein_coding chr2:128848884 chr2:128848884 . . 0 21 hm6Am_associated_SNPs_11029 0 0 1 0 1 UGGT1 chr2:128848956 5'GT 128848956 Upstream 73bp
2700 chr3 14989317 14989317 1 + G A rs533463836 14989317 + 14989297 14989337 41 TCCCGCCATCCGCCGACACCGGGAGCCCGGGCTCCCCGCGC TCCCGCCATCCGCCGACACCAGGAGCCCGGGCTCCCCGCGC Direct Gain 0 0.967757005933381 NA NA prediction 0.935514011866762 Functional Gain - FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989317 chr3:14989317 . . 0 21 hm6Am_associated_SNPs_11030 0 0 1 0 1 FGD5-AS1 chr3:14989413 5'GT 14989413 Upstream 97bp
2701 chr12 51785160 51785160 1 - C T UCEC 51785160 - 51785140 51785180 41 TTCGCTCTCTGCTGGTCGCGGTGGCCTGTAGCTCCTCCCTC TTCGCTCTCTGCTGGTCGCGATGGCCTGTAGCTCCTCCCTC Direct Gain 0 0.967754486816882 NA NA prediction 0.935508973633764 Functional Gain - GALNT6;SLC4A8 ENSG00000050438;ENSG00000139629 UTR5 Human protein_coding chr12:51785160 chr12:51785160 . . 0 21 hm6Am_associated_SNPs_11031 0 0 0 0 1 GALNT6 chr12:51785071 5'GT 51785071 Upstream 90bp
2702 chr8 11627261 11627261 1 + C A rs8191518 11627261 + 11627241 11627281 41 CGGCTGTGCGGGCTGCGTAGCGGTGCTGGGTCGGGCCGACG CGGCTGTGCGGGCTGCGTAGAGGTGCTGGGTCGGGCCGACG Direct Gain 0 0.967728080133587 NA NA prediction 0.935456160267174 Functional Gain - NEIL2 ENSG00000154328 UTR5 Human protein_coding chr8:11627261 chr8:11627261 . . 0 21 hm6Am_associated_SNPs_11041 0 0 1 0 1 NEIL2 chr8:11627300 5'GT 11627300 Upstream 40bp
2703 chr19 40267267 40267267 1 + G A rs61732544 40267267 + 40267247 40267287 41 TTCAGCCTCATGCCTCCGTGGAACCTGCCTGTCAGGCGGGC TTCAGCCTCATGCCTCCGTGAAACCTGCCTGTCAGGCGGGC Direct Gain 0 0.967714111804695 NA NA prediction 0.935428223609391 Functional Gain - LEUTX ENSG00000213921 UTR5 Human protein_coding chr19:40267267 chr19:40267267 . . 0 21 hm6Am_associated_SNPs_11047 0 0 0 0 1 LEUTX chr19:40267315 5'GT 40267315 Upstream 49bp
2704 chr12 4758305 4758305 1 + G A rs35155742 4758305 + 4758285 4758325 41 GGGAAAAGATGGCGGCTGCCGCACAATCCCGGGTTGTCCGG GGGAAAAGATGGCGGCTGCCACACAATCCCGGGTTGTCCGG Direct Gain 0 0.967693841033575 NA NA prediction 0.935387682067151 Functional Gain - NDUFA9 ENSG00000139180 CDS Human protein_coding chr12:4758305 chr12:4758305 nonsynonymous SNV 0.006 0 21 hm6Am_associated_SNPs_11052 0 0 1 0 1 NDUFA9 chr12:4758341 5'GT 4758341 Upstream 37bp
2705 chr6 161413041 161413041 1 + G A rs78823261 161413041 + 161413021 161413061 41 GCCGCCATGGAGGAGCCGCCGCCACCGCCGCCGCCGCCACC GCCGCCATGGAGGAGCCGCCACCACCGCCGCCGCCGCCACC Direct Gain 0 0.967665393730068 NA NA prediction 0.935330787460136 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161413041 chr6:161413041 synonymous SNV . 0 21 hm6Am_associated_SNPs_11060 0 0 1 0 1 MAP3K4 chr6:161413115 5'GT 161413115 Upstream 75bp
2706 chr5 140027448 140027448 1 + C A rs139482464 140027448 + 140027428 140027468 41 AGCTTGTCGCTGCGGTGTTGCTGTTGGAGACTCGATTGTTG AGCTTGTCGCTGCGGTGTTGATGTTGGAGACTCGATTGTTG Direct Gain 0 0.967650045857692 NA NA prediction 0.935300091715384 Functional Gain - MIR3655 ENSG00000264052 ncRNA_exonic Human protein_coding chr5:140027448 chr5:140027448 . . 0 21 hm6Am_associated_SNPs_11066 0 0 1 0 1 IK chr5:140027509 5'GT 140027509 Upstream 62bp
2707 chr17 44271019 44271019 1 + G A rs542016551 44271019 + 44270999 44271039 41 TACCTCCATCTGCGGAGGCCGCGGCGCCCGGCCCCAGCTGC TACCTCCATCTGCGGAGGCCACGGCGCCCGGCCCCAGCTGC Direct Gain 0 0.96760014526795 NA NA prediction 0.9352002905359 Functional Gain - KANSL1-AS1 ENSG00000214401 ncRNA_exonic Human antisense chr17:44271019 chr17:44271019 . . 0 21 hm6Am_associated_SNPs_11094 0 0 0 0 1 KANSL1-AS1 chr17:44271104 5'GT 44271104 Upstream 86bp
2708 chr19 50529356 50529356 1 + G A rs58602067 50529356 + 50529336 50529376 41 AGGCTGGGGTTGCGTCTGTTGACGCGGCCGACTACAATCCC AGGCTGGGGTTGCGTCTGTTAACGCGGCCGACTACAATCCC Direct Gain 0 0.967599853255742 NA NA prediction 0.935199706511484 Functional Gain - ZNF473 ENSG00000142528 UTR5 Human protein_coding chr19:50529356 chr19:50529356 . . 0 21 hm6Am_associated_SNPs_11095 0 0 1 0 1 ZNF473 chr19:50529379 5'GT 50529379 Upstream 24bp
2709 chr9 88556121 88556121 1 + C A rs377706157 88556121 + 88556101 88556141 41 GGGGAGGGGGCGGCGGCGGCCGAGGCGGCGTCGTTATTTCC GGGGAGGGGGCGGCGGCGGCAGAGGCGGCGTCGTTATTTCC Direct Gain 0 0.967534410702943 NA NA prediction 0.935068821405887 Functional Gain - NAA35 ENSG00000135040 UTR5 Human protein_coding chr9:88556121 chr9:88556121 . . 0 21 hm6Am_associated_SNPs_11126 0 0 1 0 2 NAA35 chr9:88556184 5'GT 88556184 Upstream 64bp
2710 chr9 88556121 88556121 1 + C A rs377706157 88556121 + 88556101 88556141 41 GGGGAGGGGGCGGCGGCGGCCGAGGCGGCGTCGTTATTTCC GGGGAGGGGGCGGCGGCGGCAGAGGCGGCGTCGTTATTTCC Direct Gain 0 0.967534410702943 NA NA prediction 0.935068821405887 Functional Gain - NAA35 ENSG00000135040 UTR5 Human protein_coding chr9:88556121 chr9:88556121 . . 0 21 hm6Am_associated_SNPs_11126 0 0 1 0 2 NAA35 chr9:88556188 5'GT 88556188 Upstream 68bp
2711 chr3 52720081 52720081 1 + T A rs535617804 52720081 + 52720061 52720101 41 CGCCAGCGGAGGCAGGTTGATGTGTTTGTGCTTCCTTCTAC CGCCAGCGGAGGCAGGTTGAAGTGTTTGTGCTTCCTTCTAC Direct Gain 0 0.96749599273828 NA NA prediction 0.93499198547656 Functional Gain - GNL3 ENSG00000163938 UTR5 Human protein_coding chr3:52720081 chr3:52720081 . . 0 21 hm6Am_associated_SNPs_11147 0 0 1 0 1 GNL3 chr3:52720121 5'GT 52720121 Upstream 41bp
2712 chr1 45477931 45477931 1 + G A COAD 45477931 + 45477911 45477951 41 TGAGCTCGCAGTTACAGACAGCTGACCATGGAAGCGAATGG TGAGCTCGCAGTTACAGACAACTGACCATGGAAGCGAATGG Direct Gain 0 0.967457928184795 NA NA prediction 0.93491585636959 Functional Gain - UROD ENSG00000126088 UTR5 Human protein_coding chr1:45477931 chr1:45477931 . . 0 21 hm6Am_associated_SNPs_11164 0 0 1 0 1 UROD chr1:45477957 5'GT 45477957 Upstream 27bp
2713 chr14 92980256 92980256 1 + C A rs368389701 92980256 + 92980236 92980276 41 GCCTGAGCGCCTCCGTTCCCCGTCCCGGAGCTGCCGGCGGC GCCTGAGCGCCTCCGTTCCCAGTCCCGGAGCTGCCGGCGGC Direct Gain 0 0.967432287036859 NA NA prediction 0.934864574073717 Functional Gain - RIN3 ENSG00000100599 UTR5 Human protein_coding chr14:92980256 chr14:92980256 . . 0 21 hm6Am_associated_SNPs_11175 0 0 1 0 1 RIN3 chr14:92980320 5'GT 92980320 Upstream 65bp
2714 chr2 152266465 152266465 1 + G A rs75732944 152266465 + 152266445 152266485 41 GCCGCACGCGTGAGTAAACAGCCGGAGCTGGGAAAGTCGAG GCCGCACGCGTGAGTAAACAACCGGAGCTGGGAAAGTCGAG Direct Gain 0 0.967424563799915 NA NA prediction 0.934849127599831 Functional Gain - RIF1 ENSG00000080345 UTR5 Human protein_coding chr2:152266465 chr2:152266465 . . 0 21 hm6Am_associated_SNPs_11180 0 0 1 0 1 RIF1 chr2:152266547 5'GT 152266547 Upstream 83bp
2715 chr19 3359615 3359615 1 + C A rs528558890 3359615 + 3359595 3359635 41 CCTCCTCCCGCCGCCTGCGGCCCCCCCCTCGCCGGGGACCG CCTCCTCCCGCCGCCTGCGGACCCCCCCTCGCCGGGGACCG Direct Gain 0 0.967218849732997 NA NA prediction 0.934437699465995 Functional Gain - NFIC ENSG00000141905 UTR5 Human protein_coding chr19:3359615 chr19:3359615 . . 0 21 hm6Am_associated_SNPs_11283 0 0 0 0 1 NFIC chr19:3359683 5'GT 3359683 Upstream 69bp
2716 chr2 238601067 238601067 1 + C A rs557840859 238601067 + 238601047 238601087 41 GGCGCGGTCCCCGAGCATTTCCCGCCGGGTGGAGCGGGCCG GGCGCGGTCCCCGAGCATTTACCGCCGGGTGGAGCGGGCCG Direct Gain 0 0.967215949204778 NA NA prediction 0.934431898409556 Functional Gain - LRRFIP1 ENSG00000124831 UTR5 Human protein_coding chr2:238601067 chr2:238601067 . . 0 21 hm6Am_associated_SNPs_11286 0 0 1 0 1 LRRFIP1 chr2:238601164 5'GT 238601164 Upstream 98bp
2717 chr3 93699283 93699283 1 + G A COAD 93699283 + 93699263 93699303 41 CCGGGATGTTCAGTCTGATGGCCAGTTGCTGCGGCTGGTTC CCGGGATGTTCAGTCTGATGACCAGTTGCTGCGGCTGGTTC Direct Gain 0 0.967192820187169 NA NA prediction 0.934385640374339 Functional Gain - ARL13B ENSG00000169379 CDS Human protein_coding chr3:93699283 chr3:93699283 nonsynonymous SNV 0.994 2 21 hm6Am_associated_SNPs_11299 0 0 1 0 1 ARL13B chr3:93699326 5'GT 93699326 Upstream 44bp
2718 chr12 27175494 27175494 1 + T A rs3963548 27175494 + 27175474 27175514 41 AGAGCAGCTGTTTTGGCGTCTGTTTGCTGCGGTAGGAACAT AGAGCAGCTGTTTTGGCGTCAGTTTGCTGCGGTAGGAACAT Direct Gain 0 0.967174492829383 NA NA prediction 0.934348985658766 Functional Gain - MED21 ENSG00000152944 UTR5 Human protein_coding chr12:27175494 chr12:27175494 . . 0 21 hm6Am_associated_SNPs_11306 0 0 1 0 1 MED21 chr12:27175554 5'GT 27175554 Upstream 61bp
2719 chr16 2205821 2205821 1 + G A rs9936655 2205821 + 2205801 2205841 41 CCGAGGGGGCATCATGAAGCGGGCTGGCGGCGCTGCCGCTC CCGAGGGGGCATCATGAAGCAGGCTGGCGGCGCTGCCGCTC Direct Gain 0 0.96711512073119 NA NA prediction 0.93423024146238 Functional Gain - TRAF7 ENSG00000131653 UTR5 Human protein_coding chr16:2205821 chr16:2205821 . . 0 21 hm6Am_associated_SNPs_11322 0 0 1 0 1 TRAF7 chr16:2205859 5'GT 2205859 Upstream 39bp
2720 chr3 38537977 38537977 1 + G A UCEC 38537977 + 38537957 38537997 41 CGCGGCCCTGCAGTTCTTCCGGAGTCAGGGCGCTGAGGGAG CGCGGCCCTGCAGTTCTTCCAGAGTCAGGGCGCTGAGGGAG Direct Gain 0 0.96710497328643 NA NA prediction 0.934209946572861 Functional Gain - EXOG ENSG00000157036 CDS Human protein_coding chr3:38537977 chr3:38537977 nonsynonymous SNV 0.031 0 21 hm6Am_associated_SNPs_11325 0 0 1 0 1 EXOG chr3:38538021 5'GT 38538021 Upstream 45bp
2721 chr10 74928060 74928060 1 + C A rs148442393 74928060 + 74928040 74928080 41 CCTGGCGTGCCTGCCCCGGCCGCGGCTGAGGAGGAGGAGGA CCTGGCGTGCCTGCCCCGGCAGCGGCTGAGGAGGAGGAGGA Direct Gain 0 0.967095439455119 NA NA prediction 0.934190878910238 Functional Gain - FAM149B1 ENSG00000138286 UTR5 Human protein_coding chr10:74928060 chr10:74928060 . . 0 21 hm6Am_associated_SNPs_11328 0 0 1 0 1 FAM149B1 chr10:74928144 5'GT 74928144 Upstream 85bp
2722 chr12 51785110 51785110 1 - G T rs1991432 51785110 - 51785090 51785130 41 CCCCTCCACCTTGGCGCTTACGAGATGAATGAGGAGCCCAG CCCCTCCACCTTGGCGCTTAAGAGATGAATGAGGAGCCCAG Direct Gain 0 0.967079545097082 NA NA prediction 0.934159090194165 Functional Gain - GALNT6;SLC4A8 ENSG00000050438;ENSG00000139629 UTR5 Human protein_coding chr12:51785110 chr12:51785110 . . 0 21 hm6Am_associated_SNPs_11334 0 0 0 0 1 GALNT6 chr12:51785071 5'GT 51785071 Upstream 40bp
2723 chr8 97657554 97657554 1 + G A rs138138871 97657554 + 97657534 97657574 41 GCCCAGTCAGGGGTGTGGCCGCCGCCACCGTAAGGCTAGGC GCCCAGTCAGGGGTGTGGCCACCGCCACCGTAAGGCTAGGC Direct Gain 0 0.967077974206945 NA NA prediction 0.934155948413889 Functional Gain - CPQ ENSG00000104324 UTR5 Human protein_coding chr8:97657554 chr8:97657554 . . 0 21 hm6Am_associated_SNPs_11335 0 0 1 0 1 CPQ chr8:97657630 5'GT 97657630 Upstream 77bp
2724 chr16 88772928 88772928 1 + C A rs880234 88772928 + 88772908 88772948 41 GCCACAGTCTGCGACGGGACCCGGCGTGCCCATGTGTCAGG GCCACAGTCTGCGACGGGACACGGCGTGCCCATGTGTCAGG Direct Gain 0 0.967047631248142 NA NA prediction 0.934095262496285 Functional Gain - CTU2 ENSG00000174177 UTR5 Human protein_coding chr16:88772928 chr16:88772928 . . 0 21 hm6Am_associated_SNPs_11351 0 0 1 0 1 CTU2 chr16:88773006 5'GT 88773006 Upstream 79bp
2725 chr7 33944686 33944686 1 + G A rs112890951 33944686 + 33944666 33944706 41 CGGGTTCCGGGAGGCGCCCGGTGAGCCCACGTCTGTTGCGG CGGGTTCCGGGAGGCGCCCGATGAGCCCACGTCTGTTGCGG Direct Gain 0 0.967045919529909 NA NA prediction 0.934091839059817 Functional Gain - BMPER ENSG00000164619 UTR5 Human protein_coding chr7:33944686 chr7:33944686 . . 0 21 hm6Am_associated_SNPs_11355 1 0 0 0 1 BMPER chr7:33944756 5'GT 33944756 Upstream 71bp
2726 chr19 50180570 50180570 1 + G A LIHC 50180570 + 50180550 50180590 41 GAGGCCGCGAACTGCATCATGGAGGTGAGCGCTTGGAGCGC GAGGCCGCGAACTGCATCATAGAGGTGAGCGCTTGGAGCGC Direct Gain 0 0.966996005246459 NA NA prediction 0.933992010492919 Functional Gain - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50180570 chr19:50180570 nonsynonymous SNV 1.000 0 21 hm6Am_associated_SNPs_11377 0 0 1 0 1 PRMT1 chr19:50180573 5'GT 50180573 Upstream 4bp
2727 chr6 52226984 52226984 1 + G A rs116616218 52226984 + 52226964 52227004 41 AAGCTCGTGGCCGGGACCCCGAGGCGGGAGCGCGGGCTGGG AAGCTCGTGGCCGGGACCCCAAGGCGGGAGCGCGGGCTGGG Direct Gain 0 0.966983382530146 NA NA prediction 0.933966765060291 Functional Gain - PAQR8 ENSG00000170915 UTR5 Human protein_coding chr6:52226984 chr6:52226984 . . 0 21 hm6Am_associated_SNPs_11383 0 0 1 0 1 PAQR8 chr6:52227047 5'GT 52227047 Upstream 64bp
2728 chr19 14492297 14492297 1 + T A rs115061086 14492297 + 14492277 14492317 41 ACGGGACAGCCCTGTCCCACTCACTCTTTCCCCTGCCGCTC ACGGGACAGCCCTGTCCCACACACTCTTTCCCCTGCCGCTC Direct Gain 0 0.966893509331343 NA NA prediction 0.933787018662686 Functional Gain - ADGRE5 ENSG00000123146 UTR5 Human protein_coding chr19:14492297 chr19:14492297 . . 0 21 hm6Am_associated_SNPs_11421 0 0 1 0 1 ADGRE5 chr19:14492357 5'GT 14492357 Upstream 61bp
2729 chr17 7240028 7240028 1 + G A rs557083590 7240028 + 7240008 7240048 41 GGGCCCGGCCTCCAGGGCCCGCTGGCCCCACAGCAGGCAAG GGGCCCGGCCTCCAGGGCCCACTGGCCCCACAGCAGGCAAG Direct Gain 0 0.966890741001715 NA NA prediction 0.933781482003429 Functional Gain - ACAP1 ENSG00000072818 UTR5 Human protein_coding chr17:7240028 chr17:7240028 . . 0 21 hm6Am_associated_SNPs_11423 0 0 0 0 1 ACAP1 chr17:7240106 5'GT 7240106 Upstream 79bp
2730 chr3 160939143 160939143 1 + G A rs549875267 160939143 + 160939123 160939163 41 GGCAGCTGACGGGACAGCCGGGGTCTATTTTGTTGCGGGTT GGCAGCTGACGGGACAGCCGAGGTCTATTTTGTTGCGGGTT Direct Gain 0 0.966817069208187 NA NA prediction 0.933634138416375 Functional Gain - NMD3 ENSG00000169251 UTR5 Human protein_coding chr3:160939143 chr3:160939143 . . 0 21 hm6Am_associated_SNPs_11450 0 0 1 0 1 NMD3 chr3:160939197 5'GT 160939197 Upstream 55bp
2731 chr14 20923410 20923410 1 + G A rs9333295 20923410 + 20923390 20923430 41 TTGTGCTCGGGTTAGGAGGAGCTAGGCTGCCATCGGGCCGG TTGTGCTCGGGTTAGGAGGAACTAGGCTGCCATCGGGCCGG Direct Gain 0 0.966696257744729 NA NA prediction 0.933392515489458 Functional Gain - APEX1 ENSG00000100823 UTR5 Human protein_coding chr14:20923410 chr14:20923410 . . 0 21 hm6Am_associated_SNPs_11510 0 0 1 0 1 APEX1 chr14:20923497 5'GT 20923497 Upstream 88bp
2732 chrX 129535956 129535956 1 + G A UCEC 129535956 + 129535936 129535976 41 CGGGGCCGCGCATGCGCTGCGCTGCCTTTCCCGGGCGCTGA CGGGGCCGCGCATGCGCTGCACTGCCTTTCCCGGGCGCTGA Direct Gain 0 0.966677032931325 NA NA prediction 0.93335406586265 Functional Gain - RBMX2 ENSG00000134597 UTR5 Human protein_coding chrX:129535956 chrX:129535956 . . 0 21 hm6Am_associated_SNPs_11518 0 0 1 0 1 RBMX2 chrX:129536011 5'GT 129536011 Upstream 56bp
2733 chr7 57509947 57509947 1 + G A rs115049994 57509947 + 57509927 57509967 41 GCTCTGCGTCCTCTGCTCCTGGAGGCCAAGCCTCTGTGGCC GCTCTGCGTCCTCTGCTCCTAGAGGCCAAGCCTCTGTGGCC Direct Gain 0 0.966656667051528 NA NA prediction 0.933313334103056 Functional Gain - ZNF716 ENSG00000182111 UTR5 Human protein_coding chr7:57509947 chr7:57509947 . . 0 21 hm6Am_associated_SNPs_11523 0 0 0 0 1 ZNF716 chr7:57510033 5'GT 57510033 Upstream 87bp
2734 chr8 42249347 42249347 1 + G A rs374143458 42249347 + 42249327 42249367 41 TCGGGGAGGGGCGGCGCGCAGGCGCGGCTGGGGGTGCGAGG TCGGGGAGGGGCGGCGCGCAAGCGCGGCTGGGGGTGCGAGG Direct Gain 0 0.966655716171734 NA NA prediction 0.933311432343468 Functional Gain - VDAC3 ENSG00000078668 UTR5 Human protein_coding chr8:42249347 chr8:42249347 . . 0 21 hm6Am_associated_SNPs_11525 0 0 0 0 1 VDAC3 chr8:42249446 5'GT 42249446 Upstream 100bp
2735 chr12 131356645 131356645 1 + G A rs11546491 131356645 + 131356625 131356665 41 CCATCTTTCCAGCCTCAGTCGGACGGGCGCGGAGACGCTTC CCATCTTTCCAGCCTCAGTCAGACGGGCGCGGAGACGCTTC Direct Gain 0 0.966602651274494 NA NA prediction 0.933205302548987 Functional Gain - RAN ENSG00000132341 CDS Human protein_coding chr12:131356645 chr12:131356645 nonsynonymous SNV 0.522 1 21 hm6Am_associated_SNPs_11539 0 0 1 0 1 RAN chr12:131356671 5'GT 131356671 Upstream 27bp
2736 chr6 29760274 29760274 1 + G A UCEC 29760274 + 29760254 29760294 41 GCCCGGCCGCGCGGATCCCCGCTTCCTCTCCGTGGGCGACG GCCCGGCCGCGCGGATCCCCACTTCCTCTCCGTGGGCGACG Direct Gain 0 0.966549926327247 NA NA prediction 0.933099852654494 Functional Gain - HCG4;LOC554223 ENSG00000176998;ENSG00000181126 ncRNA_exonic Human other chr6:29760274 chr6:29760274 . . 0 21 hm6Am_associated_SNPs_11566 0 0 0 0 1 HCG4;LOC554223 chr6:29760214 3'AG 29760214 Downstream 61bp
2737 chr8 144099971 144099971 1 + G A rs1130985 144099971 + 144099951 144099991 41 GCGCGAGGTTCGGGGAGCTCGGCCAGGCTGCTGGTACCTGC GCGCGAGGTTCGGGGAGCTCAGCCAGGCTGCTGGTACCTGC Direct Gain 0 0.966544461178094 NA NA prediction 0.933088922356189 Functional Gain - LY6E ENSG00000160932 UTR5 Human protein_coding chr8:144099971 chr8:144099971 . . 0 21 hm6Am_associated_SNPs_11567 0 0 1 0 1 LY6E chr8:144100003 5'GT 144100003 Upstream 33bp
2738 chr17 21280145 21280145 1 + G A rs536000323 21280145 + 21280125 21280165 41 CAGCGGCGGCGATGCAGCCAGCGCGGCAGCTGCCGGGGCCA CAGCGGCGGCGATGCAGCCAACGCGGCAGCTGCCGGGGCCA Direct Gain 0 0.966541335667669 NA NA prediction 0.933082671335338 Functional Gain - KCNJ12 ENSG00000184185 UTR5 Human protein_coding chr17:21280145 chr17:21280145 . . 0 21 hm6Am_associated_SNPs_11569 0 0 0 0 1 KCNJ12 chr17:21280225 5'GT 21280225 Upstream 81bp
2739 chr9 33025372 33025372 1 + G A rs182808931 33025372 + 33025352 33025392 41 TCCCTCACACACCGGCCTCAGCCCGCACCGGTGAGTTTGAG TCCCTCACACACCGGCCTCAACCCGCACCGGTGAGTTTGAG Direct Gain 0 0.966535305842067 NA NA prediction 0.933070611684133 Functional Gain - DNAJA1 ENSG00000086061 UTR5 Human protein_coding chr9:33025372 chr9:33025372 . . 0 21 hm6Am_associated_SNPs_11570 0 0 1 0 1 DNAJA1 chr9:33025381 5'GT 33025381 Upstream 10bp
2740 chr15 60296761 60296761 1 + C A rs535356973 60296761 + 60296741 60296781 41 CGGACGCTGCGCGCGGAGTGCGCGTCGAGTGCGCGCCGAGA CGGACGCTGCGCGCGGAGTGAGCGTCGAGTGCGCGCCGAGA Direct Gain 0 0.966524207174538 NA NA prediction 0.933048414349075 Functional Gain - FOXB1 ENSG00000171956 UTR5 Human protein_coding chr15:60296761 chr15:60296761 . . 0 21 hm6Am_associated_SNPs_11574 0 0 0 0 1 FOXB1 chr15:60296842 5'GT 60296842 Upstream 82bp
2741 chr2 48541893 48541893 1 + G A rs183800408 48541893 + 48541873 48541913 41 GGAAGCTGCAGGGAACAGCTGCGGTGCTCTGCCATATTGTG GGAAGCTGCAGGGAACAGCTACGGTGCTCTGCCATATTGTG Direct Gain 0 0.966486543670855 NA NA prediction 0.932973087341711 Functional Gain - FOXN2 ENSG00000170802 UTR5 Human protein_coding chr2:48541893 chr2:48541893 . . 0 21 hm6Am_associated_SNPs_11589 0 0 1 0 1 FOXN2 chr2:48541953 5'GT 48541953 Upstream 61bp
2742 chr9 129677155 129677155 1 + G A rs558522184 129677155 + 129677135 129677175 41 GCCTGGCCCGGCCCCGGCCCGGCTCGGCGTGGCCCCGGCCT GCCTGGCCCGGCCCCGGCCCAGCTCGGCGTGGCCCCGGCCT Direct Gain 0 0.966425850666921 NA NA prediction 0.932851701333843 Functional Gain - RALGPS1 ENSG00000136828 UTR5 Human protein_coding chr9:129677155 chr9:129677155 . . 0 21 hm6Am_associated_SNPs_11615 0 0 0 0 1 RALGPS1 chr9:129677254 5'GT 129677254 Upstream 100bp
2743 chr3 9834772 9834772 1 + G A rs9864323 9834772 + 9834752 9834792 41 TCGCGGGGCTGGCCACTTCCGTACTTCCGCTTTCCGGCCCA TCGCGGGGCTGGCCACTTCCATACTTCCGCTTTCCGGCCCA Direct Gain 0 0.96641078306146 NA NA prediction 0.93282156612292 Functional Gain - ARPC4;ARPC4-TTLL3 ENSG00000241553;ENSG00000250151 UTR5 Human other chr3:9834772 chr3:9834772 . . 0 21 hm6Am_associated_SNPs_11619 0 0 1 0 2 ARPC4;ARPC4-TTLL3 chr3:9834808 5'GT 9834808 Upstream 37bp
2744 chr3 9834772 9834772 1 + G A rs9864323 9834772 + 9834752 9834792 41 TCGCGGGGCTGGCCACTTCCGTACTTCCGCTTTCCGGCCCA TCGCGGGGCTGGCCACTTCCATACTTCCGCTTTCCGGCCCA Direct Gain 0 0.96641078306146 NA NA prediction 0.93282156612292 Functional Gain - ARPC4;ARPC4-TTLL3 ENSG00000241553;ENSG00000250151 UTR5 Human protein_coding chr3:9834772 chr3:9834772 . . 0 21 hm6Am_associated_SNPs_11619 0 0 1 0 2 ARPC4 chr3:9834865 5'GT 9834865 Upstream 94bp
2745 chr18 32870353 32870353 1 + G A rs149991952 32870353 + 32870333 32870373 41 AGCGGTCCGGTGACCAAGTCGAGGTAAGGGTGATGTCGGCT AGCGGTCCGGTGACCAAGTCAAGGTAAGGGTGATGTCGGCT Direct Gain 0 0.966387155943215 NA NA prediction 0.932774311886429 Functional Gain - ZNF271P ENSG00000257267 ncRNA_exonic Human transcribed_unitary_pseudogene chr18:32870353 chr18:32870353 . . 0 21 hm6Am_associated_SNPs_11624 0 0 1 0 1 ZNF271P chr18:32870355 5'GT 32870355 Upstream 3bp
2746 chr6 34434010 34434010 1 + G A rs41312307 34434010 + 34433990 34434030 41 CAGACGTCCCGCTTCGCCCCGAGTCGCCGCCGATGGTCCCC CAGACGTCCCGCTTCGCCCCAAGTCGCCGCCGATGGTCCCC Direct Gain 0 0.966252728148804 NA NA prediction 0.932505456297609 Functional Gain - PACSIN1 ENSG00000124507 UTR5 Human protein_coding chr6:34434010 chr6:34434010 . . 0 21 hm6Am_associated_SNPs_11679 0 0 0 0 1 PACSIN1 chr6:34434047 5'GT 34434047 Upstream 38bp
2747 chr3 131100690 131100690 1 + G A rs565085857 131100690 + 131100670 131100710 41 GAGCTAGGCGAGGCCCTGGCGCTGGGGTCGGGCTGGCGTCA GAGCTAGGCGAGGCCCTGGCACTGGGGTCGGGCTGGCGTCA Direct Gain 0 0.966251314742565 NA NA prediction 0.93250262948513 Functional Gain - NUDT16 ENSG00000198585 CDS Human protein_coding chr3:131100690 chr3:131100690 synonymous SNV . 0 21 hm6Am_associated_SNPs_11681 0 0 1 0 1 NUDT16 chr3:131100786 5'GT 131100786 Upstream 97bp
2748 chr19 12036021 12036021 1 + G A rs8105892 12036021 + 12036001 12036041 41 CTTCTGTCGCTCTGTCGCCTGCGCTATGCCCTGCTGTAGTC CTTCTGTCGCTCTGTCGCCTACGCTATGCCCTGCTGTAGTC Direct Gain 0 0.966242443267207 NA NA prediction 0.932484886534414 Functional Gain - ZNF700 ENSG00000196757;ENSG00000197054;ENSG00000267179 UTR5 Human other chr19:12036021 chr19:12036021 . . 0 21 hm6Am_associated_SNPs_11685 0 0 1 0 1 ZNF700 chr19:12036088 5'GT 12036088 Upstream 68bp
2749 chr11 557661 557661 1 - C T rs4963199 557661 - 557641 557681 41 CACCCAGCCCCTGCCCACTGGCTTCCGGTCCCCTCTTGCAG CACCCAGCCCCTGCCCACTGACTTCCGGTCCCCTCTTGCAG Direct Gain 0 0.966193359754565 NA NA prediction 0.93238671950913 Functional Gain - LMNTD2 ENSG00000254815 ncRNA_exonic Human protein_coding chr11:557661 chr11:557661 . . 0 21 hm6Am_associated_SNPs_11703 0 0 1 0 1 LMNTD2 chr11:557572 5'GT 557572 Upstream 90bp
2750 chr1 7844469 7844469 1 + G A rs228730 7844469 + 7844449 7844489 41 CCGGGCGGGAGTTCTGGGCGGCCGGGCGGGAGTTCTGGGCA CCGGGCGGGAGTTCTGGGCGACCGGGCGGGAGTTCTGGGCA Direct Gain 0 0.966134178136485 NA NA prediction 0.93226835627297 Functional Gain - PER3 ENSG00000049246 intronic Human protein_coding chr1:7844469 chr1:7844469 . . 0 21 hm6Am_associated_SNPs_11723 0 0 0 0 1 PER3 chr1:7844528 5'GT 7844528 Upstream 60bp
2751 chr19 18284636 18284636 1 + C A rs531634659 18284636 + 18284616 18284656 41 AGCCGCTGCAGTCGCCACACCTTTGCCCCTGCTGCGATGAC AGCCGCTGCAGTCGCCACACATTTGCCCCTGCTGCGATGAC Direct Gain 0 0.965970637540394 NA NA prediction 0.931941275080788 Functional Gain - IFI30 ENSG00000216490;ENSG00000268173 UTR5;UTR3 Human other chr19:18284636 chr19:18284636 . . 0 21 hm6Am_associated_SNPs_11806 0 0 1 0 1 IFI30 chr19:18284614 3'AG 18284614 Downstream 23bp
2752 chr19 51376749 51376749 1 + C A UCEC 51376749 + 51376729 51376769 41 CATGTGGGACCTGGTTCTCTCCATCGCCTTGTCTGTGGGGT CATGTGGGACCTGGTTCTCTACATCGCCTTGTCTGTGGGGT Direct Gain 0 0.965758907775756 NA NA prediction 0.931517815551511 Functional Gain - KLK2 ENSG00000167751 CDS Human protein_coding chr19:51376749 chr19:51376749 nonsynonymous SNV 0.000 1 21 hm6Am_associated_SNPs_11893 0 0 0 1 1 KLK2 chr19:51376775 5'GT 51376775 Upstream 27bp
2753 chr1 209848839 209848839 1 + G A rs148090379 209848839 + 209848819 209848859 41 TCGGTCGGACCAACGGACGCGCTGACCGCTGCCAACTGCAG TCGGTCGGACCAACGGACGCACTGACCGCTGCCAACTGCAG Direct Gain 0 0.965742986258405 NA NA prediction 0.931485972516809 Functional Gain - LOC101930114 ENSG00000227591 ncRNA_intronic Human antisense chr1:209848839 chr1:209848839 . . 0 21 hm6Am_associated_SNPs_11899 0 0 1 0 1 LOC101930114 chr1:209848894 5'GT 209848894 Upstream 56bp
2754 chr12 110940101 110940101 1 + G A rs140738814 110940101 + 110940081 110940121 41 AACATCCGGGCACCTGGGCCGTCGAGCTGAGGCGCGCCTTC AACATCCGGGCACCTGGGCCATCGAGCTGAGGCGCGCCTTC Direct Gain 0 0.965674461557619 NA NA prediction 0.931348923115238 Functional Gain - RAD9B ENSG00000151164 UTR5 Human protein_coding chr12:110940101 chr12:110940101 . . 0 21 hm6Am_associated_SNPs_11923 0 0 0 0 2 RAD9B chr12:110940181 5'GT 110940181 Upstream 81bp
2755 chr12 110940101 110940101 1 + G A rs140738814 110940101 + 110940081 110940121 41 AACATCCGGGCACCTGGGCCGTCGAGCTGAGGCGCGCCTTC AACATCCGGGCACCTGGGCCATCGAGCTGAGGCGCGCCTTC Direct Gain 0 0.965674461557619 NA NA prediction 0.931348923115238 Functional Gain - RAD9B ENSG00000151164 UTR5 Human protein_coding chr12:110940101 chr12:110940101 . . 0 21 hm6Am_associated_SNPs_11923 0 0 0 0 2 RAD9B chr12:110940188 5'GT 110940188 Upstream 88bp
2756 chr16 811079 811079 1 + G A rs533681129 811079 + 811059 811099 41 ATGGGCGCTGCCAGCGCCACGCACTCCTCTTTCTGCCTGGC ATGGGCGCTGCCAGCGCCACACACTCCTCTTTCTGCCTGGC Direct Gain 0 0.965658327074995 NA NA prediction 0.93131665414999 Functional Gain - MSLN ENSG00000102854 UTR5 Human protein_coding chr16:811079 chr16:811079 . . 0 21 hm6Am_associated_SNPs_11928 0 0 0 0 1 MSLN chr16:811174 5'GT 811174 Upstream 96bp
2757 chr20 44098402 44098402 1 + C A rs200690352 44098402 + 44098382 44098422 41 AGCATCGGCTCACACCTGCACCCCGCCCGGGCATAGCACCA AGCATCGGCTCACACCTGCAACCCGCCCGGGCATAGCACCA Direct Gain 0 0.965600104831435 NA NA prediction 0.931200209662871 Functional Gain - WFDC2 ENSG00000101443 UTR5 Human protein_coding chr20:44098402 chr20:44098402 . . 0 21 hm6Am_associated_SNPs_11958 0 0 0 0 1 WFDC2 chr20:44098500 5'GT 44098500 Upstream 99bp
2758 chr14 22192103 22192103 1 + C A LUAD 22192103 + 22192083 22192123 41 GTGGGCTGGAAAGGACCCCCCCAATCCCGCCCGCCGTGAGC GTGGGCTGGAAAGGACCCCCACAATCCCGCCCGCCGTGAGC Direct Gain 0 0.965586459806303 NA NA prediction 0.931172919612605 Functional Gain - OR4E1;LINC02332 ENSG00000211777 UTR5 Human TR_V_gene chr14:22192103 chr14:22192103 . . 0 21 hm6Am_associated_SNPs_11969 0 0 0 0 1 OR4E1;LINC02332 chr14:22192181 5'GT 22192181 Upstream 79bp
2759 chr17 1665330 1665330 1 + C A rs9913583 1665330 + 1665310 1665350 41 TTAGAAGGCAGCAAAAAAAGCTCTGTGCTGGCTGGAGCCCC TTAGAAGGCAGCAAAAAAAGATCTGTGCTGGCTGGAGCCCC Direct Gain 0 0.96554838661263 NA NA prediction 0.93109677322526 Functional Gain - SERPINF1 ENSG00000132386 UTR5 Human protein_coding chr17:1665330 chr17:1665330 . . 0 21 hm6Am_associated_SNPs_11986 1 0 0 0 1 SERPINF1 chr17:1665407 5'GT 1665407 Upstream 78bp
2760 chr17 61700054 61700054 1 + G A rs569279279 61700054 + 61700034 61700074 41 TCCCCGCCGCCCGGGCCCCCGGCATGCAGCCCCGGCTGCGG TCCCCGCCGCCCGGGCCCCCAGCATGCAGCCCCGGCTGCGG Direct Gain 0 0.965516887835895 NA NA prediction 0.931033775671789 Functional Gain - MAP3K3 ENSG00000198909 UTR5 Human protein_coding chr17:61700054 chr17:61700054 . . 0 21 hm6Am_associated_SNPs_12000 0 0 1 0 1 MAP3K3 chr17:61700123 5'GT 61700123 Upstream 70bp
2761 chr12 124155786 124155786 1 + G A rs141768405 124155786 + 124155766 124155806 41 CCCGGCCCGCGAGGTCTAAGGCATGGGCTTCCAGCCTCCGG CCCGGCCCGCGAGGTCTAAGACATGGGCTTCCAGCCTCCGG Direct Gain 0 0.965385884832514 NA NA prediction 0.930771769665028 Functional Gain - TCTN2 ENSG00000168778 UTR5 Human protein_coding chr12:124155786 chr12:124155786 . . 0 21 hm6Am_associated_SNPs_12056 3 0 1 0 1 TCTN2 chr12:124155869 5'GT 124155869 Upstream 84bp
2762 chr5 72112556 72112556 1 + G A rs200694972 72112556 + 72112536 72112576 41 CGAAGGCCCGAGCGCCCGAGGCGTCTGGGATGGTGTGGGAC CGAAGGCCCGAGCGCCCGAGACGTCTGGGATGGTGTGGGAC Direct Gain 0 0.965326247605806 NA NA prediction 0.930652495211612 Functional Gain - TNPO1 ENSG00000083312 UTR5 Human protein_coding chr5:72112556 chr5:72112556 . . 0 21 hm6Am_associated_SNPs_12090 0 0 1 0 1 TNPO1 chr5:72112579 5'GT 72112579 Upstream 24bp
2763 chr8 79428627 79428627 1 + G A rs144942806 79428627 + 79428607 79428647 41 CGGGCCGGCGCGAGCTGACCGAGCACTCGGCGGGCGCGGCG CGGGCCGGCGCGAGCTGACCAAGCACTCGGCGGGCGCGGCG Direct Gain 0 0.965316431443902 NA NA prediction 0.930632862887805 Functional Gain - PKIA ENSG00000254266 ncRNA_intronic Human lincRNA chr8:79428627 chr8:79428627 . . 0 21 hm6Am_associated_SNPs_12101 0 0 1 0 1 PKIA chr8:79428703 5'GT 79428703 Upstream 77bp
2764 chr11 118215122 118215122 1 + G A rs145293635 118215122 + 118215102 118215142 41 GGCTGCTCCACGCTTTTGCCGGAGGACAGAGACTGACATGG GGCTGCTCCACGCTTTTGCCAGAGGACAGAGACTGACATGG Direct Gain 0 0.965289586285879 NA NA prediction 0.930579172571758 Functional Gain - CD3G ENSG00000160654 UTR5 Human protein_coding chr11:118215122 chr11:118215122 . . 0 21 hm6Am_associated_SNPs_12117 0 0 0 0 1 CD3G chr11:118215193 5'GT 118215193 Upstream 72bp
2765 chr4 206480 206480 1 + G A STAD 206480 + 206460 206500 41 CAGGGAGGCCTCAGTGATTCGGCCACAGCCTCAGCCTCCGT CAGGGAGGCCTCAGTGATTCAGCCACAGCCTCAGCCTCCGT Direct Gain 0 0.965287535875958 NA NA prediction 0.930575071751915 Functional Gain - ZNF876P ENSG00000198155 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr4:206480 chr4:206480 . . 0 21 hm6Am_associated_SNPs_12119 0 0 0 0 1 ZNF876P chr4:206570 5'GT 206570 Upstream 91bp
2766 chr2 220144142 220144142 1 + C A rs143983369 220144142 + 220144122 220144162 41 CACAGCTGGGCCGGGCGCGTCCTACGCAGCAGCCGCGAGCC CACAGCTGGGCCGGGCGCGTACTACGCAGCAGCCGCGAGCC Direct Gain 0 0.96528379769109 NA NA prediction 0.930567595382181 Functional Gain - DNAJB2 ENSG00000135924 UTR5 Human protein_coding chr2:220144142 chr2:220144142 . . 0 21 hm6Am_associated_SNPs_12123 0 0 1 0 1 DNAJB2 chr2:220144240 5'GT 220144240 Upstream 99bp
2767 chr8 11627216 11627216 1 + G A rs372390621 11627216 + 11627196 11627236 41 GCCGCATGGGCCGCCGAGCCGGGAAATCTCCGCCCCCAGCT GCCGCATGGGCCGCCGAGCCAGGAAATCTCCGCCCCCAGCT Direct Gain 0 0.965228712113645 NA NA prediction 0.93045742422729 Functional Gain - NEIL2 ENSG00000154328 UTR5 Human protein_coding chr8:11627216 chr8:11627216 . . 0 21 hm6Am_associated_SNPs_12151 0 0 0 0 1 NEIL2 chr8:11627300 5'GT 11627300 Upstream 85bp
2768 chr7 100210391 100210391 1 + G A BLCA 100210391 + 100210371 100210411 41 TCCCCTGAGCTCTGCCCTCGGATGTCCGACCGCCCAGAGCC TCCCCTGAGCTCTGCCCTCGAATGTCCGACCGCCCAGAGCC Direct Gain 0 0.965222966715516 NA NA prediction 0.930445933431033 Functional Gain - MOSPD3 ENSG00000106330 UTR5 Human protein_coding chr7:100210391 chr7:100210391 . . 0 21 hm6Am_associated_SNPs_12152 0 0 1 0 1 MOSPD3 chr7:100210353 3'AG 100210353 Downstream 39bp
2769 chr11 57480227 57480227 1 + G A STAD 57480227 + 57480207 57480247 41 GAGGAAACTGCCGCCGCTCTGCCACGGTCTGCCCACCCAAC GAGGAAACTGCCGCCGCTCTACCACGGTCTGCCCACCCAAC Direct Gain 0 0.965211960438931 NA NA prediction 0.930423920877863 Functional Gain - TMX2 ENSG00000213593;ENSG00000254462 CDS Human other chr11:57480227 chr11:57480227 nonsynonymous SNV 0.270 4 21 hm6Am_associated_SNPs_12155 0 0 1 0 1 TMX2 chr11:57480279 5'GT 57480279 Upstream 53bp
2770 chr11 63706557 63706557 1 + G A rs374134584 63706557 + 63706537 63706577 41 TGAAGAAGAAGCTGAGCGTTGTCGCCGCCGCTATGGGGGTG TGAAGAAGAAGCTGAGCGTTATCGCCGCCGCTATGGGGGTG Direct Gain 0 0.965200650954266 NA NA prediction 0.930401301908531 Functional Gain - NAA40 ENSG00000110583 UTR5 Human protein_coding chr11:63706557 chr11:63706557 . . 0 21 hm6Am_associated_SNPs_12160 0 0 1 0 1 NAA40 chr11:63706574 5'GT 63706574 Upstream 18bp
2771 chr17 38519423 38519423 1 + C A rs560397963 38519423 + 38519403 38519443 41 TCCCCGGCGCGCGGGCGGCCCTTCCAGAGCAGGTGGCCCAG TCCCCGGCGCGCGGGCGGCCATTCCAGAGCAGGTGGCCCAG Direct Gain 0 0.9651869856091 NA NA prediction 0.930373971218201 Functional Gain - GJD3 ENSG00000183153;ENSG00000266208 CDS Human other chr17:38519423 chr17:38519423 nonsynonymous SNV 0.803 2 21 hm6Am_associated_SNPs_12169 0 0 1 0 1 GJD3 chr17:38519335 3'AG 38519335 Downstream 89bp
2772 chr2 192110326 192110326 1 + G A rs114357438 192110326 + 192110306 192110346 41 GACGACGTGGAGGCGGAGTGGCGCCCGGCGAGGTAGCGCCA GACGACGTGGAGGCGGAGTGACGCCCGGCGAGGTAGCGCCA Direct Gain 0 0.965106280517447 NA NA prediction 0.930212561034893 Functional Gain - MYO1B ENSG00000227542 ncRNA_intronic Human lincRNA chr2:192110326 chr2:192110326 . . 0 21 hm6Am_associated_SNPs_12213 0 0 1 0 2 MYO1B chr2:192110337 5'GT 192110337 Upstream 12bp
2773 chr2 192110326 192110326 1 + G A rs114357438 192110326 + 192110306 192110346 41 GACGACGTGGAGGCGGAGTGGCGCCCGGCGAGGTAGCGCCA GACGACGTGGAGGCGGAGTGACGCCCGGCGAGGTAGCGCCA Direct Gain 0 0.965106280517447 NA NA prediction 0.930212561034893 Functional Gain - MYO1B ENSG00000227542 ncRNA_intronic Human lincRNA chr2:192110326 chr2:192110326 . . 0 21 hm6Am_associated_SNPs_12213 0 0 1 0 2 MYO1B chr2:192110352 5'GT 192110352 Upstream 27bp
2774 chr4 3465072 3465072 1 + C A rs572342022 3465072 + 3465052 3465092 41 CCTGGGCTGGGGCGCCGGGGCGAGCGCGGCGGCGCGGAACC CCTGGGCTGGGGCGCCGGGGAGAGCGCGGCGGCGCGGAACC Direct Gain 0 0.96508221243855 NA NA prediction 0.9301644248771 Functional Gain - DOK7 ENSG00000175920 UTR5 Human protein_coding chr4:3465072 chr4:3465072 . . 0 21 hm6Am_associated_SNPs_12222 0 0 0 0 1 DOK7 chr4:3465156 5'GT 3465156 Upstream 85bp
2775 chr14 24899232 24899232 1 + C A rs559960512 24899232 + 24899212 24899252 41 AAGGCCCGCCCAGATTCGGGCCCCCTGCCCTTGTCCCCTGG AAGGCCCGCCCAGATTCGGGACCCCTGCCCTTGTCCCCTGG Direct Gain 0 0.965050003281992 NA NA prediction 0.930100006563983 Functional Gain - KHNYN ENSG00000100441 UTR5 Human protein_coding chr14:24899232 chr14:24899232 . . 0 21 hm6Am_associated_SNPs_12231 0 0 1 0 1 KHNYN chr14:24899325 5'GT 24899325 Upstream 94bp
2776 chr15 44038897 44038897 1 + G A COAD 44038897 + 44038877 44038917 41 TCATGCTCGTCGAGTTCTTCGCCCCCTGGTGAGTCCATTCT TCATGCTCGTCGAGTTCTTCACCCCCTGGTGAGTCCATTCT Direct Gain 0 0.964957726201304 NA NA prediction 0.929915452402609 Functional Gain - PDIA3 ENSG00000167004 CDS Human protein_coding chr15:44038897 chr15:44038897 nonsynonymous SNV 0.993 4 21 hm6Am_associated_SNPs_12275 0 0 1 0 1 PDIA3 chr15:44038904 5'GT 44038904 Upstream 8bp
2777 chr3 99979860 99979860 1 + G A rs200968095 99979860 + 99979840 99979880 41 AAGTGACGTGGACGTCAACAGCAATGGCGGAAGGAGAAGAT AAGTGACGTGGACGTCAACAACAATGGCGGAAGGAGAAGAT Direct Gain 0 0.964930883205074 NA NA prediction 0.929861766410149 Functional Gain - TBC1D23 ENSG00000036054 UTR5 Human protein_coding chr3:99979860 chr3:99979860 . . 0 21 hm6Am_associated_SNPs_12285 0 0 1 0 1 TBC1D23 chr3:99979915 5'GT 99979915 Upstream 56bp
2778 chr21 47706329 47706329 1 + G A rs567447894 47706329 + 47706309 47706349 41 CTTTGCTGGGTCCAGACACCGGTACGTCCGGGCGGGTTTTT CTTTGCTGGGTCCAGACACCAGTACGTCCGGGCGGGTTTTT Direct Gain 0 0.964829268132648 NA NA prediction 0.929658536265295 Functional Gain - YBEY ENSG00000182362 UTR5 Human protein_coding chr21:47706329 chr21:47706329 . . 0 21 hm6Am_associated_SNPs_12333 0 0 1 0 1 YBEY chr21:47706329 5'GT 47706329 Upstream 1bp
2779 chrX 130192413 130192413 1 + G A COAD 130192413 + 130192393 130192433 41 GGCCTTTGAGCCCCGCCCCCGCCGTGGTGAGTGGGGCCCAC GGCCTTTGAGCCCCGCCCCCACCGTGGTGAGTGGGGCCCAC Direct Gain 0 0.964804877752298 NA NA prediction 0.929609755504596 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130192413 chrX:130192413 nonsynonymous SNV 1.000 1 21 hm6Am_associated_SNPs_12345 0 0 0 0 1 ARHGAP36 chrX:130192418 5'GT 130192418 Upstream 6bp
2780 chr16 68057232 68057232 1 + C A rs140657263 68057232 + 68057212 68057252 41 CGTGAGGAAGAAGCGAGGTTCTTTTTAAGAGTTCAGCTGCG CGTGAGGAAGAAGCGAGGTTATTTTTAAGAGTTCAGCTGCG Direct Gain 0 0.964797773737926 NA NA prediction 0.929595547475852 Functional Gain - DDX28;DUS2 ENSG00000167264;ENSG00000182810 UTR5 Human other chr16:68057232 chr16:68057232 . . 0 21 hm6Am_associated_SNPs_12353 0 0 1 0 1 DDX28;DUS2 chr16:68057254 5'GT 68057254 Upstream 23bp
2781 chr17 1733324 1733324 1 + C A rs184577713 1733324 + 1733304 1733344 41 GCCAATAACTGCGCAGCGCGCGGGACCCGGGTGGGGAAGCT GCCAATAACTGCGCAGCGCGAGGGACCCGGGTGGGGAAGCT Direct Gain 0 0.964784987488626 NA NA prediction 0.929569974977252 Functional Gain - RPA1 ENSG00000132383 UTR5 Human protein_coding chr17:1733324 chr17:1733324 . . 0 21 hm6Am_associated_SNPs_12359 0 0 1 0 1 RPA1 chr17:1733420 5'GT 1733420 Upstream 97bp
2782 chr19 55344215 55344215 1 + G A rs368679255 55344215 + 55344195 55344235 41 GCCGCCTGTCTGCACCGGCAGCACCATGTCGCTCATGGTCA GCCGCCTGTCTGCACCGGCAACACCATGTCGCTCATGGTCA Direct Gain 0 0.964698554377639 NA NA prediction 0.929397108755279 Functional Gain - KIR2DS4 ENSG00000221957 UTR5 Human polymorphic_pseudogene chr19:55344215 chr19:55344215 . . 0 21 hm6Am_associated_SNPs_12405 0 0 0 0 1 KIR2DS4 chr19:55344253 5'GT 55344253 Upstream 39bp
2783 chr3 58138528 58138528 1 + G A rs9884098 58138528 + 58138508 58138548 41 ATGGCAGTGCTCCGTGCCCCGCATGCGGCCGCCTGGCCTCA ATGGCAGTGCTCCGTGCCCCACATGCGGCCGCCTGGCCTCA Direct Gain 0 0.964671005227307 NA NA prediction 0.929342010454613 Functional Gain - FLNB ENSG00000136068 UTR3 Human protein_coding chr3:58138528 chr3:58138528 . . 0 21 hm6Am_associated_SNPs_12423 0 0 0 0 2 FLNB chr3:58138435 3'AG 58138435 Downstream 94bp
2784 chr3 58138528 58138528 1 + G A rs9884098 58138528 + 58138508 58138548 41 ATGGCAGTGCTCCGTGCCCCGCATGCGGCCGCCTGGCCTCA ATGGCAGTGCTCCGTGCCCCACATGCGGCCGCCTGGCCTCA Direct Gain 0 0.964671005227307 NA NA prediction 0.929342010454613 Functional Gain - FLNB ENSG00000136068 UTR3 Human protein_coding chr3:58138528 chr3:58138528 . . 0 21 hm6Am_associated_SNPs_12423 0 0 0 0 2 FLNB chr3:58138581 5'GT 58138581 Upstream 54bp
2785 chr19 48972743 48972743 1 - C T rs550245290 48972743 - 48972723 48972763 41 GCGGCTAGGAAGGCCCGCGGGGAATCCGGGGCGGTCCCGCC GCGGCTAGGAAGGCCCGCGGAGAATCCGGGGCGGTCCCGCC Direct Gain 0 0.964637858607755 NA NA prediction 0.92927571721551 Functional Gain - CYTH2 ENSG00000268530 ncRNA_exonic Human antisense chr19:48972743 chr19:48972743 . . 0 21 hm6Am_associated_SNPs_12433 0 0 1 0 1 CYTH2 chr19:48972687 5'GT 48972687 Upstream 57bp
2786 chr3 38029658 38029658 1 + G A rs139884254 38029658 + 38029638 38029678 41 GCTTCCAGGCAGAGAAGCCTGCAGTGCAAAGGTCTGCAGAC GCTTCCAGGCAGAGAAGCCTACAGTGCAAAGGTCTGCAGAC Direct Gain 0 0.9646306774949 NA NA prediction 0.9292613549898 Functional Gain - CTDSPL;VILL ENSG00000136059 UTR5 Human protein_coding chr3:38029658 chr3:38029658 . . 0 21 hm6Am_associated_SNPs_12439 0 0 0 0 1 CTDSPL;VILL chr3:38029729 5'GT 38029729 Upstream 72bp
2787 chr20 60708477 60708477 1 + G A UCEC 60708477 + 60708457 60708497 41 GGGCAATGGGACCACCCGTCGCAACCCCACTTCCCACAGGG GGGCAATGGGACCACCCGTCACAACCCCACTTCCCACAGGG Direct Gain 0 0.964582429087114 NA NA prediction 0.929164858174229 Functional Gain - LSM14B ENSG00000149657 CDS Human protein_coding chr20:60708477 chr20:60708477 nonsynonymous SNV 0.971 2 21 hm6Am_associated_SNPs_12455 0 0 1 0 1 LSM14B chr20:60708531 5'GT 60708531 Upstream 55bp
2788 chr2 114384974 114384974 1 + G A rs372613648 114384974 + 114384954 114384994 41 TCCAGCCCTCACTCGGAACCGCACGTGAGGGCAAATCCGCC TCCAGCCCTCACTCGGAACCACACGTGAGGGCAAATCCGCC Direct Gain 0 0.96458034007894 NA NA prediction 0.92916068015788 Functional Gain - RABL2A ENSG00000144134 UTR5 Human protein_coding chr2:114384974 chr2:114384974 . . 0 21 hm6Am_associated_SNPs_12457 0 0 0 0 2 RABL2A chr2:114384901 3'AG 114384901 Downstream 74bp
2789 chr2 114384974 114384974 1 + G A rs372613648 114384974 + 114384954 114384994 41 TCCAGCCCTCACTCGGAACCGCACGTGAGGGCAAATCCGCC TCCAGCCCTCACTCGGAACCACACGTGAGGGCAAATCCGCC Direct Gain 0 0.96458034007894 NA NA prediction 0.92916068015788 Functional Gain - RABL2A ENSG00000144134 UTR5 Human protein_coding chr2:114384974 chr2:114384974 . . 0 21 hm6Am_associated_SNPs_12457 0 0 0 0 2 RABL2A chr2:114384977 5'GT 114384977 Upstream 4bp
2790 chr9 35749365 35749365 1 + T A rs371309471 35749365 + 35749345 35749385 41 GTCCCTGAGGGGCGGGCAGATGAGGCCTAGGGGTGCCGATC GTCCCTGAGGGGCGGGCAGAAGAGGCCTAGGGGTGCCGATC Direct Gain 0 0.964552371998303 NA NA prediction 0.929104743996605 Functional Gain - RGP1 ENSG00000107185 UTR5 Human protein_coding chr9:35749365 chr9:35749365 . . 0 21 hm6Am_associated_SNPs_12474 0 0 1 0 1 RGP1 chr9:35749405 5'GT 35749405 Upstream 41bp
2791 chr13 73302046 73302046 1 + C A rs41283994 73302046 + 73302026 73302066 41 CTGGTTGGCCCAAGACAGCGCGGAAGCGGGGAGTTAAAGAG CTGGTTGGCCCAAGACAGCGAGGAAGCGGGGAGTTAAAGAG Direct Gain 0 0.964508943001526 NA NA prediction 0.929017886003052 Functional Gain - BORA ENSG00000136122;ENSG00000204899 upstream Human protein_coding chr13:73302046 chr13:73302046 . . 0 21 hm6Am_associated_SNPs_12495 0 0 0 0 1 BORA chr13:73302145 5'GT 73302145 Upstream 100bp
2792 chr8 94767119 94767119 1 + T A LUAD 94767119 + 94767099 94767139 41 GCTGATGGGGGGCTGGAGGCTGTGAGGCTTCCAGCGTCGGT GCTGATGGGGGGCTGGAGGCAGTGAGGCTTCCAGCGTCGGT Direct Gain 0 0.964474046140184 NA NA prediction 0.928948092280368 Functional Gain - TMEM67 ENSG00000164953 UTR5 Human protein_coding chr8:94767119 chr8:94767119 . . 0 21 hm6Am_associated_SNPs_12515 0 0 0 0 1 TMEM67 chr8:94767137 5'GT 94767137 Upstream 19bp
2793 chr1 54412137 54412137 1 + G A CESC 54412137 + 54412117 54412157 41 CCTAGCTTTGTGCCCGGGGTGCTGAGCCCTTCCCCGTCAGC CCTAGCTTTGTGCCCGGGGTACTGAGCCCTTCCCCGTCAGC Direct Gain 0 0.964467260403806 NA NA prediction 0.928934520807611 Functional Gain - LRRC42 ENSG00000116212 UTR5 Human protein_coding chr1:54412137 chr1:54412137 . . 0 21 hm6Am_associated_SNPs_12520 0 0 1 0 1 LRRC42 chr1:54412222 5'GT 54412222 Upstream 86bp
2794 chr14 23982470 23982470 1 + C A rs534173879 23982470 + 23982450 23982490 41 CATCGTCTGCCTCCATCACCCCTCCGCCCGCCCGCCTACCC CATCGTCTGCCTCCATCACCACTCCGCCCGCCCGCCTACCC Direct Gain 0 0.964288950177875 NA NA prediction 0.92857790035575 Functional Gain - NGDN;ZFHX2 ENSG00000157306 ncRNA_exonic Human processed_transcript chr14:23982470 chr14:23982470 . . 0 21 hm6Am_associated_SNPs_12602 0 0 1 0 2 NGDN;ZFHX2 chr14:23982426 3'AG 23982426 Downstream 45bp
2795 chr14 23982470 23982470 1 + C A rs534173879 23982470 + 23982450 23982490 41 CATCGTCTGCCTCCATCACCCCTCCGCCCGCCCGCCTACCC CATCGTCTGCCTCCATCACCACTCCGCCCGCCCGCCTACCC Direct Gain 0 0.964288950177875 NA NA prediction 0.92857790035575 Functional Gain - NGDN;ZFHX2 ENSG00000157306 ncRNA_exonic Human processed_transcript chr14:23982470 chr14:23982470 . . 0 21 hm6Am_associated_SNPs_12602 0 0 1 0 2 NGDN;ZFHX2 chr14:23982543 5'GT 23982543 Upstream 74bp
2796 chr12 65672556 65672556 1 + C A LUAD 65672556 + 65672536 65672576 41 GCCTGGCCTTTCCATGAGCCCGCGGCGGACCCTCCCGCGCC GCCTGGCCTTTCCATGAGCCAGCGGCGGACCCTCCCGCGCC Direct Gain 0 0.964282498192941 NA NA prediction 0.928564996385882 Functional Gain - MSRB3 ENSG00000174099 CDS Human protein_coding chr12:65672556 chr12:65672556 nonsynonymous SNV 0.134 1 21 hm6Am_associated_SNPs_12607 0 0 1 0 1 MSRB3 chr12:65672645 5'GT 65672645 Upstream 90bp
2797 chr1 3569205 3569205 1 + G A rs541812463 3569205 + 3569185 3569225 41 CCGGGGCTGCGACGGCTGCAGGTAGGAGGCCCAGGGCCGGG CCGGGGCTGCGACGGCTGCAAGTAGGAGGCCCAGGGCCGGG Direct Gain 0 0.964217372551505 NA NA prediction 0.928434745103011 Functional Gain - TP73 ENSG00000078900 UTR5 Human protein_coding chr1:3569205 chr1:3569205 . . 0 21 hm6Am_associated_SNPs_12644 0 0 1 0 1 TP73 chr1:3569205 5'GT 3569205 Upstream 1bp
2798 chr19 15220551 15220551 1 + G A UCEC 15220551 + 15220531 15220571 41 CCCCCCAACCAAAGCCTCCCGCACCAAGTCCCCGGGCCCCG CCCCCCAACCAAAGCCTCCCACACCAAGTCCCCGGGCCCCG Direct Gain 0 0.964172251109944 NA NA prediction 0.928344502219888 Functional Gain - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15220551 chr19:15220551 nonsynonymous SNV 0.999 3 21 hm6Am_associated_SNPs_12664 0 0 1 0 1 SYDE1 chr19:15220515 3'AG 15220515 Downstream 37bp
2799 chr7 79082469 79082469 1 + G A BLCA 79082469 + 79082449 79082489 41 TCCGACACCAATTTGCTGCCGCTCTCATAGGCCACCTTGCC TCCGACACCAATTTGCTGCCACTCTCATAGGCCACCTTGCC Direct Gain 0 0.964156189090525 NA NA prediction 0.92831237818105 Functional Gain - MAGI2 ENSG00000187391 CDS Human protein_coding chr7:79082469 chr7:79082469 synonymous SNV . 0 21 hm6Am_associated_SNPs_12673 0 0 0 0 1 MAGI2 chr7:79082507 5'GT 79082507 Upstream 39bp
2800 chr1 46016501 46016501 1 + G A rs28607905 46016501 + 46016481 46016521 41 GCACCGCCCACGTGGCCAGCGCCACCTGCCTCATTGTGCCC GCACCGCCCACGTGGCCAGCACCACCTGCCTCATTGTGCCC Direct Gain 0 0.964133528155592 NA NA prediction 0.928267056311185 Functional Gain - AKR1A1 ENSG00000117448 UTR5 Human protein_coding chr1:46016501 chr1:46016501 . . 0 21 hm6Am_associated_SNPs_12681 0 0 1 0 1 AKR1A1 chr1:46016548 5'GT 46016548 Upstream 48bp
2801 chr1 119683385 119683385 1 + C A UCEC 119683385 + 119683365 119683405 41 CAGGCTGCGCAGCGCAGCCGCTATCGGGCGGACTGCAGTTC CAGGCTGCGCAGCGCAGCCGATATCGGGCGGACTGCAGTTC Direct Gain 0 0.964095913336105 NA NA prediction 0.928191826672209 Functional Gain - LOC101929147 ENSG00000231365 ncRNA_exonic Human antisense chr1:119683385 chr1:119683385 . . 0 21 hm6Am_associated_SNPs_12697 0 0 1 0 1 LOC101929147 chr1:119683416 5'GT 119683416 Upstream 32bp
2802 chr6 56911530 56911530 1 + G A COAD 56911530 + 56911510 56911550 41 GGGACAGCAGGAGCAGTGGTGCTGTCAGCGCGGCCGTCGGA GGGACAGCAGGAGCAGTGGTACTGTCAGCGCGGCCGTCGGA Direct Gain 0 0.964081917660817 NA NA prediction 0.928163835321634 Functional Gain - KIAA1586 ENSG00000168116 UTR5 Human protein_coding chr6:56911530 chr6:56911530 . . 0 21 hm6Am_associated_SNPs_12710 0 0 1 0 1 KIAA1586 chr6:56911574 5'GT 56911574 Upstream 45bp
2803 chr11 118955774 118955774 1 + G A rs142812375 118955774 + 118955754 118955794 41 ACGGCAATGCGGCTGCAACGGCGGTGAGTGCTGAGCCGGTG ACGGCAATGCGGCTGCAACGACGGTGAGTGCTGAGCCGGTG Direct Gain 0 0.964048909486281 NA NA prediction 0.928097818972561 Functional Gain - HMBS ENSG00000256269 CDS Human protein_coding chr11:118955774 chr11:118955774 nonsynonymous SNV 0.202 1 21 hm6Am_associated_SNPs_12726 0 0 1 0 2 HMBS chr11:118955776 5'GT 118955776 Upstream 3bp
2804 chr11 118955774 118955774 1 + G A rs142812375 118955774 + 118955754 118955794 41 ACGGCAATGCGGCTGCAACGGCGGTGAGTGCTGAGCCGGTG ACGGCAATGCGGCTGCAACGACGGTGAGTGCTGAGCCGGTG Direct Gain 0 0.964048909486281 NA NA prediction 0.928097818972561 Functional Gain - HMBS ENSG00000256269 CDS Human protein_coding chr11:118955774 chr11:118955774 nonsynonymous SNV 0.202 1 21 hm6Am_associated_SNPs_12726 0 0 1 0 2 HMBS chr11:118955867 5'GT 118955867 Upstream 94bp
2805 chr1 28157731 28157731 1 + G A rs554778656 28157731 + 28157711 28157751 41 ACTGAGTGCCTGGTGCTCTCGTGGAGCATCGCATCTGGCCC ACTGAGTGCCTGGTGCTCTCATGGAGCATCGCATCTGGCCC Direct Gain 0 0.964023755889774 NA NA prediction 0.928047511779548 Functional Gain - PPP1R8 ENSG00000117751 UTR5 Human protein_coding chr1:28157731 chr1:28157731 . . 0 21 hm6Am_associated_SNPs_12737 0 0 1 0 1 PPP1R8 chr1:28157757 5'GT 28157757 Upstream 27bp
2806 chr11 64107735 64107735 1 + G A rs663743 64107735 + 64107715 64107755 41 TGAGACGGGCACCCCGACCCGGGCATGGAGGGGGGCAAGGG TGAGACGGGCACCCCGACCCAGGCATGGAGGGGGGCAAGGG Direct Gain 0 0.964010467960047 NA NA prediction 0.928020935920095 Functional Gain - CCDC88B ENSG00000168071 UTR5 Human protein_coding chr11:64107735 chr11:64107735 . . 0 21 hm6Am_associated_SNPs_12744 0 1 0 0 1 CCDC88B chr11:64107798 5'GT 64107798 Upstream 64bp
2807 chr5 68665674 68665674 1 + G A rs373350913 68665674 + 68665654 68665694 41 AGAGGCTCGGCGTTGAGCCCGGGTAGGGCCAGGTGGCTGCC AGAGGCTCGGCGTTGAGCCCAGGTAGGGCCAGGTGGCTGCC Direct Gain 0 0.964000873973451 NA NA prediction 0.928001747946902 Functional Gain - AK6;RAD17;TAF9 ENSG00000085231;ENSG00000152942 UTR5 Human other chr5:68665674 chr5:68665674 . . 0 21 hm6Am_associated_SNPs_12752 0 0 1 0 1 AK6;RAD17;TAF9 chr5:68665760 5'GT 68665760 Upstream 87bp
2808 chr2 207024682 207024682 1 + G A UCS 207024682 + 207024662 207024702 41 TCTCTTTCTGCTGCTCCCCAGCTCTCGGATACAGCCGACAC TCTCTTTCTGCTGCTCCCCAACTCTCGGATACAGCCGACAC Direct Gain 0 0.963990766937844 NA NA prediction 0.927981533875688 Functional Gain - EEF1B2 ENSG00000114942 splicing Human protein_coding chr2:207024682 chr2:207024682 . . 0 21 hm6Am_associated_SNPs_12758 0 0 1 0 1 EEF1B2 chr2:207024637 3'AG 207024637 Downstream 46bp
2809 chr1 25783143 25783143 1 + G A UCS 25783143 + 25783123 25783163 41 GCTGGATTGTCTTCTTTCTAGTATTGGGTACCCTGTGGTAA GCTGGATTGTCTTCTTTCTAATATTGGGTACCCTGTGGTAA Direct Gain 0 0.963985818888044 NA NA prediction 0.927971637776087 Functional Gain - TMEM57 ENSG00000204178 splicing Human protein_coding chr1:25783143 chr1:25783143 . 0.998 0 21 hm6Am_associated_SNPs_12761 0 0 1 0 1 TMEM57 chr1:25783064 3'AG 25783064 Downstream 80bp
2810 chr1 156561719 156561719 1 + G A BLCA 156561719 + 156561699 156561739 41 TGGTGGGGACCGCAGCGGCTGAACTCGGGTGGCCGCTGGGA TGGTGGGGACCGCAGCGGCTAAACTCGGGTGGCCGCTGGGA Direct Gain 0 0.963932413419161 NA NA prediction 0.927864826838322 Functional Gain - NAXE ENSG00000163382 CDS Human protein_coding chr1:156561719 chr1:156561719 synonymous SNV . 0 21 hm6Am_associated_SNPs_12787 0 0 1 0 1 NAXE chr1:156561778 5'GT 156561778 Upstream 60bp
2811 chr1 42922272 42922272 1 + G A rs72950587 42922272 + 42922252 42922292 41 CCGGTAGCCGAGTTCCCCCAGCCTCCCGGTGCTGCGCGCTG CCGGTAGCCGAGTTCCCCCAACCTCCCGGTGCTGCGCGCTG Direct Gain 0 0.963900781578612 NA NA prediction 0.927801563157225 Functional Gain - PPCS ENSG00000127125 CDS Human protein_coding chr1:42922272 chr1:42922272 synonymous SNV . 0 21 hm6Am_associated_SNPs_12807 0 0 1 0 1 PPCS chr1:42922299 5'GT 42922299 Upstream 28bp
2812 chr1 150459905 150459905 1 + G A rs201336268 150459905 + 150459885 150459925 41 GCGATAATCTGTTTGAGGATGTAGGCACTGGTGTGAAGGAA GCGATAATCTGTTTGAGGATATAGGCACTGGTGTGAAGGAA Direct Gain 0 0.963820398646859 NA NA prediction 0.927640797293719 Functional Gain - TARS2 ENSG00000143374 UTR5 Human protein_coding chr1:150459905 chr1:150459905 . . 0 21 hm6Am_associated_SNPs_12849 1 0 1 0 1 TARS2 chr1:150459992 5'GT 150459992 Upstream 88bp
2813 chr1 101004035 101004035 1 + G A rs116464679 101004035 + 101004015 101004055 41 TCCCTCCCCCTGAGACACCGGCTAAGGACCAGCCTAAACGC TCCCTCCCCCTGAGACACCGACTAAGGACCAGCCTAAACGC Direct Gain 0 0.963800622842697 NA NA prediction 0.927601245685394 Functional Gain - GPR88 ENSG00000181656 UTR5 Human protein_coding chr1:101004035 chr1:101004035 . . 0 21 hm6Am_associated_SNPs_12863 0 0 0 0 1 GPR88 chr1:101004058 5'GT 101004058 Upstream 24bp
2814 chr13 100258945 100258945 1 + G A rs375691452 100258945 + 100258925 100258965 41 AGGGCGGGGCGCGCGCGTCGGGAAGATGGCGCTACGTCTGC AGGGCGGGGCGCGCGCGTCGAGAAGATGGCGCTACGTCTGC Direct Gain 0 0.963703252751288 NA NA prediction 0.927406505502577 Functional Gain - CLYBL ENSG00000125246 UTR5 Human protein_coding chr13:100258945 chr13:100258945 . . 0 21 hm6Am_associated_SNPs_12902 0 0 1 0 1 CLYBL chr13:100259011 5'GT 100259011 Upstream 67bp
2815 chrX 102611505 102611505 1 + G A rs187252386 102611505 + 102611485 102611525 41 GGTGGTCCCTGAGGCCCGTGGAAGGAGTCAAACTTGCGGGA GGTGGTCCCTGAGGCCCGTGAAAGGAGTCAAACTTGCGGGA Direct Gain 0 0.963612955788041 NA NA prediction 0.927225911576082 Functional Gain - TCEAL9 ENSG00000185222 UTR5 Human protein_coding chrX:102611505 chrX:102611505 . . 0 21 hm6Am_associated_SNPs_12939 0 0 1 0 1 TCEAL9 chrX:102611534 5'GT 102611534 Upstream 30bp
2816 chr3 136538191 136538191 1 + C A rs7610507 136538191 + 136538171 136538211 41 GCCGCCACACCTAAGGGGCACAACAGTCTTTTTGGGTAAGG GCCGCCACACCTAAGGGGCAAAACAGTCTTTTTGGGTAAGG Direct Gain 0 0.963575985482922 NA NA prediction 0.927151970965843 Functional Gain - SLC35G2 ENSG00000168917 UTR5 Human protein_coding chr3:136538191 chr3:136538191 . . 0 21 hm6Am_associated_SNPs_12950 0 0 0 0 1 SLC35G2 chr3:136538205 5'GT 136538205 Upstream 15bp
2817 chr19 11877958 11877958 1 + G A rs78397313 11877958 + 11877938 11877978 41 CTTCTGTCTCGCTGGGACCCGCACTGACAGCGGGAGGCAGA CTTCTGTCTCGCTGGGACCCACACTGACAGCGGGAGGCAGA Direct Gain 0 0.963570416155322 NA NA prediction 0.927140832310643 Functional Gain - ZNF441 ENSG00000197044 UTR5 Human protein_coding chr19:11877958 chr19:11877958 . . 0 21 hm6Am_associated_SNPs_12955 0 0 1 0 1 ZNF441 chr19:11878011 5'GT 11878011 Upstream 54bp
2818 chr11 60971000 60971000 1 + C A LUAD 60971000 + 60970980 60971020 41 GCTCTGCACCTTCCTCCCGTCTTGCCTTCTCCCTCGAGTTG GCTCTGCACCTTCCTCCCGTATTGCCTTCTCCCTCGAGTTG Direct Gain 0 0.963518059064168 NA NA prediction 0.927036118128335 Functional Gain - PGA3 ENSG00000229859 UTR5 Human protein_coding chr11:60971000 chr11:60971000 . . 0 21 hm6Am_associated_SNPs_12976 0 0 0 0 1 PGA3 chr11:60971092 5'GT 60971092 Upstream 93bp
2819 chr11 74660356 74660356 1 + G A CESC 74660356 + 74660336 74660376 41 GGCGGCAGCTGTACAGGGCGGGAGAAGCGGTGGTAGCGGAG GGCGGCAGCTGTACAGGGCGAGAGAAGCGGTGGTAGCGGAG Direct Gain 0 0.963517034166865 NA NA prediction 0.927034068333729 Functional Gain - SPCS2 ENSG00000118363 CDS Human protein_coding chr11:74660356 chr11:74660356 nonsynonymous SNV 0.993 2 21 hm6Am_associated_SNPs_12980 0 0 1 0 1 SPCS2 chr11:74660444 5'GT 74660444 Upstream 89bp
2820 chr20 18448276 18448276 1 + C A rs561412712 18448276 + 18448256 18448296 41 GTCATTTGGGCAGCTGGACCCCTTCTCCGGGATCCCTTGGG GTCATTTGGGCAGCTGGACCACTTCTCCGGGATCCCTTGGG Direct Gain 0 0.963491600811488 NA NA prediction 0.926983201622975 Functional Gain - POLR3F ENSG00000132664 intronic Human protein_coding chr20:18448276 chr20:18448276 . . 0 21 hm6Am_associated_SNPs_12991 0 0 0 0 1 POLR3F chr20:18448315 5'GT 18448315 Upstream 40bp
2821 chr8 79578370 79578370 1 + G A rs151163140 79578370 + 79578350 79578390 41 GAAGGAGTCTCGCTGAGCTCGAGGAGGTGGCGCGATGGAGG GAAGGAGTCTCGCTGAGCTCAAGGAGGTGGCGCGATGGAGG Direct Gain 0 0.963473433131675 NA NA prediction 0.92694686626335 Functional Gain - ZC2HC1A ENSG00000104427 UTR5 Human protein_coding chr8:79578370 chr8:79578370 . . 0 21 hm6Am_associated_SNPs_13004 0 0 1 0 1 ZC2HC1A chr8:79578399 5'GT 79578399 Upstream 30bp
2822 chr7 117824245 117824245 1 + G A rs200772066 117824245 + 117824225 117824265 41 TTCTGCTTGCTGTCGGCACCGCTGCGTTACCCGGAACCGCC TTCTGCTTGCTGTCGGCACCACTGCGTTACCCGGAACCGCC Direct Gain 0 0.963458972078211 NA NA prediction 0.926917944156421 Functional Gain - LSM8 ENSG00000128534 UTR5 Human protein_coding chr7:117824245 chr7:117824245 . . 0 21 hm6Am_associated_SNPs_13018 0 0 1 0 1 LSM8 chr7:117824308 5'GT 117824308 Upstream 64bp
2823 chr11 30344703 30344703 1 + G A rs544492901 30344703 + 30344683 30344723 41 CGGTCGAGTGTGGCCTGTGTGGACTCGCATCTTGCCCGAAG CGGTCGAGTGTGGCCTGTGTAGACTCGCATCTTGCCCGAAG Direct Gain 0 0.963455757688468 NA NA prediction 0.926911515376937 Functional Gain - ARL14EP ENSG00000152219 UTR5 Human protein_coding chr11:30344703 chr11:30344703 . . 0 21 hm6Am_associated_SNPs_13021 0 0 1 0 1 ARL14EP chr11:30344749 5'GT 30344749 Upstream 47bp
2824 chr22 37415859 37415859 1 + G A rs531305334 37415859 + 37415839 37415879 41 GCTGCGGGCGCGGGGAGGGGGCGCCGCGCCGCGGGGGCCAT GCTGCGGGCGCGGGGAGGGGACGCCGCGCCGCGGGGGCCAT Direct Gain 0 0.963436364161219 NA NA prediction 0.926872728322438 Functional Gain - MPST ENSG00000128309 UTR5 Human protein_coding chr22:37415859 chr22:37415859 . . 0 21 hm6Am_associated_SNPs_13033 0 0 1 0 1 MPST chr22:37415913 5'GT 37415913 Upstream 55bp
2825 chr9 104161450 104161450 1 + G A rs61755098 104161450 + 104161430 104161470 41 GCCTGGGAGATGGCTTCCCCGAGCCCCCCGCCGGAGTCGAA GCCTGGGAGATGGCTTCCCCAAGCCCCCCGCCGGAGTCGAA Direct Gain 0 0.963408670036892 NA NA prediction 0.926817340073783 Functional Gain - ZNF189 ENSG00000136870 CDS Human protein_coding chr9:104161450 chr9:104161450 synonymous SNV . 0 21 hm6Am_associated_SNPs_13046 0 0 1 0 1 ZNF189 chr9:104161471 5'GT 104161471 Upstream 22bp
2826 chr1 93297610 93297610 1 + C A rs368663464 93297610 + 93297590 93297630 41 CTGTGGCCCTTTTCCCACCCCCTAGCGCCGCTGGGCCTGCA CTGTGGCCCTTTTCCCACCCACTAGCGCCGCTGGGCCTGCA Direct Gain 0 0.963389203954956 NA NA prediction 0.926778407909912 Functional Gain - RPL5 ENSG00000122406 UTR5 Human protein_coding chr1:93297610 chr1:93297610 . . 0 21 hm6Am_associated_SNPs_13060 0 0 1 0 1 RPL5 chr1:93297674 5'GT 93297674 Upstream 65bp
2827 chr5 179234123 179234123 1 + G A rs181836948 179234123 + 179234103 179234143 41 GCTCGTGCGAGTCGGCCTCAGGTAAGGCTGGAGTGGGAGTG GCTCGTGCGAGTCGGCCTCAAGTAAGGCTGGAGTGGGAGTG Direct Gain 0 0.963386120361791 NA NA prediction 0.926772240723582 Functional Gain - SQSTM1 ENSG00000161011 intronic Human protein_coding chr5:179234123 chr5:179234123 . . 0 21 hm6Am_associated_SNPs_13063 0 0 1 0 1 SQSTM1 chr5:179234123 5'GT 179234123 Upstream 1bp
2828 chr5 112312615 112312615 1 + G A UCS 112312615 + 112312595 112312635 41 AGCCGGGATGCACTGTTCCTGCTGTGGGTCCTCATCATGGA AGCCGGGATGCACTGTTCCTACTGTGGGTCCTCATCATGGA Direct Gain 0 0.963365492372505 NA NA prediction 0.926730984745011 Functional Gain - DCP2 ENSG00000172795 CDS Human protein_coding chr5:112312615 chr5:112312615 unknown . 0 21 hm6Am_associated_SNPs_13074 0 0 1 2 1 DCP2 chr5:112312683 5'GT 112312683 Upstream 69bp
2829 chr5 72112540 72112540 1 + G A rs184025964 72112540 + 72112520 72112560 41 GCAGTGCCGCTTCGGCCGAAGGCCCGAGCGCCCGAGGCGTC GCAGTGCCGCTTCGGCCGAAAGCCCGAGCGCCCGAGGCGTC Direct Gain 0 0.963352870589732 NA NA prediction 0.926705741179463 Functional Gain - TNPO1 ENSG00000083312 UTR5 Human protein_coding chr5:72112540 chr5:72112540 . . 0 21 hm6Am_associated_SNPs_13087 0 0 1 0 1 TNPO1 chr5:72112579 5'GT 72112579 Upstream 40bp
2830 chr17 1944878 1944878 1 + G A STAD 1944878 + 1944858 1944898 41 GGTGAACCACGGCCAGGACCGCCGTCCCCACGCCCCGGGCC GGTGAACCACGGCCAGGACCACCGTCCCCACGCCCCGGGCC Direct Gain 0 0.963339387945455 NA NA prediction 0.926678775890911 Functional Gain - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1944878 chr17:1944878 nonsynonymous SNV 0.006 0 21 hm6Am_associated_SNPs_13094 0 0 1 0 1 DPH1 chr17:1944915 5'GT 1944915 Upstream 38bp
2831 chr1 17634717 17634717 1 + G A rs369679127 17634717 + 17634697 17634737 41 GAGGGACGAGCTAGCCCGACGATGGCCCAGGGGACATTGAT GAGGGACGAGCTAGCCCGACAATGGCCCAGGGGACATTGAT Direct Gain 0 0.963336873451388 NA NA prediction 0.926673746902775 Functional Gain - PADI4 ENSG00000159339 UTR5 Human protein_coding chr1:17634717 chr1:17634717 . . 0 21 hm6Am_associated_SNPs_13096 0 0 0 0 1 PADI4 chr1:17634809 5'GT 17634809 Upstream 93bp
2832 chr7 148851130 148851130 1 + G A LAML 148851130 + 148851110 148851150 41 AGGCACACCTGCAGACAGCAGCTATCTCTCTGTGGACAGTG AGGCACACCTGCAGACAGCAACTATCTCTCTGTGGACAGTG Direct Gain 0 0.963321529094449 NA NA prediction 0.926643058188898 Functional Gain - ZNF398 ENSG00000197024 CDS Human protein_coding chr7:148851130 chr7:148851130 nonsynonymous SNV 0.997 2 21 hm6Am_associated_SNPs_13107 0 0 0 0 1 ZNF398 chr7:148851037 3'AG 148851037 Downstream 94bp
2833 chr6 160221338 160221338 1 + C A rs148594392 160221338 + 160221318 160221358 41 GACTCCGCGGAGCTGCACGGCCATGGACGTGGGCGCCGACG GACTCCGCGGAGCTGCACGGACATGGACGTGGGCGCCGACG Direct Gain 0 0.963291404627664 NA NA prediction 0.926582809255328 Functional Gain - PNLDC1 ENSG00000146453 UTR5 Human protein_coding chr6:160221338 chr6:160221338 . . 0 21 hm6Am_associated_SNPs_13126 0 0 1 0 1 PNLDC1 chr6:160221415 5'GT 160221415 Upstream 78bp
2834 chr6 133135750 133135750 1 + G A rs539423662 133135750 + 133135730 133135770 41 TCGCGCGGAGGCGGAGGCTTGGGGTAAGTTGAGCGAGGCGG TCGCGCGGAGGCGGAGGCTTAGGGTAAGTTGAGCGAGGCGG Direct Gain 0 0.963285178716458 NA NA prediction 0.926570357432915 Functional Gain - RPS12 ENSG00000112306 UTR5 Human protein_coding chr6:133135750 chr6:133135750 . . 0 21 hm6Am_associated_SNPs_13130 0 0 1 0 1 RPS12 chr6:133135752 5'GT 133135752 Upstream 3bp
2835 chr1 170501355 170501355 1 + G A UCEC 170501355 + 170501335 170501375 41 CACTTTTGGGGGTGCCGGTGGCCCGGGCCGATGGCGCAAGG CACTTTTGGGGGTGCCGGTGACCCGGGCCGATGGCGCAAGG Direct Gain 0 0.963282247609932 NA NA prediction 0.926564495219864 Functional Gain - GORAB ENSG00000120370 CDS Human protein_coding chr1:170501355 chr1:170501355 stopgain 0.000 0 21 hm6Am_associated_SNPs_13131 0 0 0 0 1 GORAB chr1:170501425 5'GT 170501425 Upstream 71bp
2836 chr1 43766712 43766712 1 + G A rs200017023 43766712 + 43766692 43766732 41 TCTGACCCCAGGCCCAGCTCGTCCTGGCTGGCCTGGGTCGG TCTGACCCCAGGCCCAGCTCATCCTGGCTGGCCTGGGTCGG Direct Gain 0 0.963204879545959 NA NA prediction 0.926409759091918 Functional Gain - TIE1 ENSG00000066056 UTR5 Human protein_coding chr1:43766712 chr1:43766712 . . 0 21 hm6Am_associated_SNPs_13170 0 0 0 0 1 TIE1 chr1:43766800 5'GT 43766800 Upstream 89bp
2837 chr7 889612 889612 1 + G A STAD 889612 + 889592 889632 41 GCGCACACAGCCGCCCACTCGCAGTCGCCACGGCTGCCCGG GCGCACACAGCCGCCCACTCACAGTCGCCACGGCTGCCCGG Direct Gain 0 0.963190975110959 NA NA prediction 0.926381950221919 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:889612 chr7:889612 synonymous SNV . 0 21 hm6Am_associated_SNPs_13176 0 0 1 0 2 SUN1 chr7:889560 3'AG 889560 Downstream 53bp
2838 chr7 889612 889612 1 + G A STAD 889612 + 889592 889632 41 GCGCACACAGCCGCCCACTCGCAGTCGCCACGGCTGCCCGG GCGCACACAGCCGCCCACTCACAGTCGCCACGGCTGCCCGG Direct Gain 0 0.963190975110959 NA NA prediction 0.926381950221919 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:889612 chr7:889612 synonymous SNV . 0 21 hm6Am_associated_SNPs_13176 0 0 1 0 2 SUN1 chr7:889670 5'GT 889670 Upstream 59bp
2839 chr1 235492089 235492089 1 + G A rs551990849 235492089 + 235492069 235492109 41 AAAGTCGTGATATCATCGTTGAACTGTGAGCGGCAGTGGCG AAAGTCGTGATATCATCGTTAAACTGTGAGCGGCAGTGGCG Direct Gain 0 0.963045041172679 NA NA prediction 0.926090082345358 Functional Gain - GGPS1 ENSG00000152904 UTR5 Human protein_coding chr1:235492089 chr1:235492089 . . 0 21 hm6Am_associated_SNPs_13250 0 0 1 0 1 GGPS1 chr1:235492093 5'GT 235492093 Upstream 5bp