chr6 44221365 44221365 1 + C A rs183673959 44221365 + 44221345 44221385 41 TCATAGTTGGAAAACTTGTGCCCTTGTATAGTGTCCCCATG TCATAGTTGGAAAACTTGTGACCTTGTATAGTGTCCCCATG Direct Loss 1 0.00245720031235748 1 0.0112613439559937 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control HSP90AB1 ENSG00000096384 UTR3 Human protein_coding chr6:44221365 chr6:44221365 . . 0 21 Nm_associated_SNPs_3 0 0 1 2 44221351 44221374 mRNA hsa-miR-381 HSP90AB1 miRanda miRanda
chr6 44221365 44221365 1 + C A rs183673959 44221365 + 44221345 44221385 41 TCATAGTTGGAAAACTTGTGCCCTTGTATAGTGTCCCCATG TCATAGTTGGAAAACTTGTGACCTTGTATAGTGTCCCCATG Direct Loss 1 0.00245720031235748 1 0.0112613439559937 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control HSP90AB1 ENSG00000096384 UTR3 Human protein_coding chr6:44221365 chr6:44221365 . . 0 21 Nm_associated_SNPs_3 0 0 1 2 44221353 44221374 mRNA hsa-miR-300 HSP90AB1 miRanda miRanda
chr22 35811868 35811868 1 + C T LUAD 35811868 + 35811848 35811888 41 CGCAGCTGGACTGACAGCCTCGGTGATGAGGGACCCTTCGT CGCAGCTGGACTGACAGCCTTGGTGATGAGGGACCCTTCGT Direct Loss 1 0.992271808313993 1 0.995289206504822 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control MCM5 ENSG00000100297 CDS Human protein_coding chr22:35811868 chr22:35811868 nonsynonymous SNV 0.951 4 21 Nm_associated_SNPs_10 0 0 1 1 35811848 35811869 mRNA hsa-miR-485-5p MCM5 miRanda miRanda
chr10 62553719 62553719 1 + A G LUSC 62553719 + 62553699 62553739 41 TTAATGATTTGGACAATCAGATTAAGAAGATGTAGCTTTCT TTAATGATTTGGACAATCAGGTTAAGAAGATGTAGCTTTCT Direct Loss 1 0.850080787424059 1 0.0627947449684143 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control CDK1 ENSG00000170312 CDS Human protein_coding chr10:62553719 chr10:62553719 nonsynonymous SNV 1.000 0 21 Nm_associated_SNPs_11 0 0 1 2 62553713 62553735 mRNA hsa-miR-221 CDK1 miRanda miRanda
chr10 62553719 62553719 1 + A G LUSC 62553719 + 62553699 62553739 41 TTAATGATTTGGACAATCAGATTAAGAAGATGTAGCTTTCT TTAATGATTTGGACAATCAGGTTAAGAAGATGTAGCTTTCT Direct Loss 1 0.850080787424059 1 0.0627947449684143 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control CDK1 ENSG00000170312 CDS Human protein_coding chr10:62553719 chr10:62553719 nonsynonymous SNV 1.000 0 21 Nm_associated_SNPs_11 0 0 1 2 62553713 62553735 mRNA hsa-miR-222 CDK1 miRanda miRanda
chr17 7481744 7481744 1 + T C OV 7481744 + 7481724 7481764 41 AAGAGGACTCTTCGAGACATTGAGACCTTCTACAACACCTC AAGAGGACTCTTCGAGACATCGAGACCTTCTACAACACCTC Direct Loss 1 0.586296922749754 1 0.154370248317719 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7481744 chr17:7481744 synonymous SNV . 0 21 Nm_associated_SNPs_13 0 0 1 1 7481744 7481764 mRNA hsa-miR-296-3p EIF4A1 miRanda miRanda
chr11 47259499 47259499 1 + T C UCEC 47259499 + 47259479 47259519 41 TCGACGTGTTCGATGGAAACTCAGGGAAGATGATGTGTCAG TCGACGTGTTCGATGGAAACCCAGGGAAGATGATGTGTCAG Direct Loss 1 0.316740399330083 1 0.314360022544861 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control DDB2 ENSG00000134574 CDS Human protein_coding chr11:47259499 chr11:47259499 nonsynonymous SNV 1.000 4 21 Nm_associated_SNPs_25 0 0 1 2 47259480 47259505 mRNA hsa-miR-125b DDB2 miRanda miRanda
chr11 47259499 47259499 1 + T C UCEC 47259499 + 47259479 47259519 41 TCGACGTGTTCGATGGAAACTCAGGGAAGATGATGTGTCAG TCGACGTGTTCGATGGAAACCCAGGGAAGATGATGTGTCAG Direct Loss 1 0.316740399330083 1 0.314360022544861 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control DDB2 ENSG00000134574 CDS Human protein_coding chr11:47259499 chr11:47259499 nonsynonymous SNV 1.000 4 21 Nm_associated_SNPs_25 0 0 1 2 47259480 47259505 mRNA hsa-miR-125a-5p DDB2 miRanda miRanda
chr1 225977945 225977945 1 + T C rs191367978 225977942 + 225977922 225977962 41 AGGTGTGACTGTCACAACTGTTATGTTTTCCAGTAAACTAG AGGTGTGACTGTCACAACTGTTACGTTTTCCAGTAAACTAG < 41bp 1 0.0505317131180728 1 0.988563060760498 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control|28504680;GSE90165;Nm-seq;HEK293T;Control SRP9 ENSG00000143742 UTR3 Human protein_coding chr1:225977942 chr1:225977945 . . 0 24 Nm_associated_SNPs_33 0 0 1 1 225977925 225977949 mRNA hsa-miR-495 SRP9 miRanda miRanda
chr3 195399385 195399385 1 + C T rs551407333 195399371 + 195399351 195399391 41 CCAGAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAG CCAGAGGCTGTGGCCCTGAGAAAGATCACGTCTATCTGCAG < 41bp 1 0.117569738069822 1 0.0169640183448792 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195399371 chr3:195399385 . . 0 35 Nm_associated_SNPs_40 0 0 0 4 195399371 195399397 lncRNA hsa-miR-1301-3p MUC20-OT1 miRanda starBase2
chr3 195399385 195399385 1 + C T rs551407333 195399371 + 195399351 195399391 41 CCAGAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAG CCAGAGGCTGTGGCCCTGAGAAAGATCACGTCTATCTGCAG < 41bp 1 0.117569738069822 1 0.0169640183448792 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195399371 chr3:195399385 . . 0 35 Nm_associated_SNPs_40 0 0 0 4 195399377 195399397 lncRNA hsa-miR-5047 MUC20-OT1 miRanda starBase2
chr3 195399385 195399385 1 + C T rs551407333 195399371 + 195399351 195399391 41 CCAGAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAG CCAGAGGCTGTGGCCCTGAGAAAGATCACGTCTATCTGCAG < 41bp 1 0.117569738069822 1 0.0169640183448792 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195399371 chr3:195399385 . . 0 35 Nm_associated_SNPs_40 0 0 0 4 195399367 195399387 lncRNA hsa-miR-3529-5p MUC20-OT1 miRanda starBase2
chr3 195399385 195399385 1 + C T rs551407333 195399371 + 195399351 195399391 41 CCAGAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAG CCAGAGGCTGTGGCCCTGAGAAAGATCACGTCTATCTGCAG < 41bp 1 0.117569738069822 1 0.0169640183448792 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195399371 chr3:195399385 . . 0 35 Nm_associated_SNPs_40 0 0 0 4 195399367 195399387 lncRNA hsa-miR-379-5p MUC20-OT1 miRanda starBase2
chr7 143112257 143112257 1 + A T rs192260783 143112248 + 143112228 143112268 41 ATTAAAAGGGATGTTTGGATGAAGCTTCAATCTCAAGAAGA ATTAAAAGGGATGTTTGGATGAAGCTTCATTCTCAAGAAGA < 41bp 1 0.771947591738296 1 0.084873378276825 experiment 0.456104816523409 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control EPHA1-AS1 ENSG00000229153 ncRNA_exonic Human antisense chr7:143112248 chr7:143112257 . . 0 30 Nm_associated_SNPs_54 0 0 0 1 143112241 143112262 mRNA hsa-miR-143 LOC285965 miRanda miRanda
chr10 7849688 7849688 1 + T C rs4655 7849691 + 7849671 7849711 41 CCTTTGTCCGAAGAAACTGTTCCTCCATTATTTGAATTACT CCTTTGTCCGAAGAAACCGTTCCTCCATTATTTGAATTACT < 41bp 1 0.781507587469953 1 0.0950707495212555 experiment 0.436984825060093 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control ATP5C1 ENSG00000165629 UTR3 Human protein_coding chr10:7849691 chr10:7849688 . . 0 18 Nm_associated_SNPs_61 0 0 1 3 7849684 7849706 mRNA hsa-miR-26a ATP5C1 miRanda miRanda
chr10 7849688 7849688 1 + T C rs4655 7849691 + 7849671 7849711 41 CCTTTGTCCGAAGAAACTGTTCCTCCATTATTTGAATTACT CCTTTGTCCGAAGAAACCGTTCCTCCATTATTTGAATTACT < 41bp 1 0.781507587469953 1 0.0950707495212555 experiment 0.436984825060093 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control ATP5C1 ENSG00000165629 UTR3 Human protein_coding chr10:7849691 chr10:7849688 . . 0 18 Nm_associated_SNPs_61 0 0 1 3 7849685 7849706 mRNA hsa-miR-26b ATP5C1 miRanda miRanda
chr10 7849688 7849688 1 + T C rs4655 7849691 + 7849671 7849711 41 CCTTTGTCCGAAGAAACTGTTCCTCCATTATTTGAATTACT CCTTTGTCCGAAGAAACCGTTCCTCCATTATTTGAATTACT < 41bp 1 0.781507587469953 1 0.0950707495212555 experiment 0.436984825060093 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control ATP5C1 ENSG00000165629 UTR3 Human protein_coding chr10:7849691 chr10:7849688 . . 0 18 Nm_associated_SNPs_61 0 0 1 3 7849676 7849696 mRNA hsa-miR-873 ATP5C1 miRanda miRanda
chr12 102792665 102792665 1 - G A rs570297144 102792676 - 102792656 102792696 41 CTTGGGAGAAGGCTTAGAATAAAAGATGTAGCACATTTTGC CTTGGGAGAAGGCTTAGAATAAAAGATGTAGTACATTTTGC < 41bp 1 0.451803560257974 1 0.267112523317337 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control IGF1 ENSG00000017427 UTR3 Human protein_coding chr12:102792676 chr12:102792665 . . 0 32 Nm_associated_SNPs_74 0 0 0 2 102792664 102792688 mRNA hsa-miR-221 IGF1 miRanda miRanda
chr12 102792665 102792665 1 - G A rs570297144 102792676 - 102792656 102792696 41 CTTGGGAGAAGGCTTAGAATAAAAGATGTAGCACATTTTGC CTTGGGAGAAGGCTTAGAATAAAAGATGTAGTACATTTTGC < 41bp 1 0.451803560257974 1 0.267112523317337 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control IGF1 ENSG00000017427 UTR3 Human protein_coding chr12:102792676 chr12:102792665 . . 0 32 Nm_associated_SNPs_74 0 0 0 2 102792664 102792684 mRNA hsa-miR-222 IGF1 miRanda miRanda
chr12 124081779 124081779 1 + G T rs7965292 124081774 + 124081754 124081794 41 CTAATGGCAGAGCTCTCTGACTTGGGTGTATGCTGCCAGGC CTAATGGCAGAGCTCTCTGACTTGGTTGTATGCTGCCAGGC < 41bp 1 0.358965398256633 1 0.366149544715881 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control TMED2 ENSG00000086598 UTR3 Human protein_coding chr12:124081774 chr12:124081779 . . 0 26 Nm_associated_SNPs_75 0 0 1 2 124081767 124081790 mRNA hsa-miR-103 TMED2 miRanda miRanda
chr12 124081779 124081779 1 + G T rs7965292 124081774 + 124081754 124081794 41 CTAATGGCAGAGCTCTCTGACTTGGGTGTATGCTGCCAGGC CTAATGGCAGAGCTCTCTGACTTGGTTGTATGCTGCCAGGC < 41bp 1 0.358965398256633 1 0.366149544715881 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control TMED2 ENSG00000086598 UTR3 Human protein_coding chr12:124081774 chr12:124081779 . . 0 26 Nm_associated_SNPs_75 0 0 1 2 124081767 124081790 mRNA hsa-miR-107 TMED2 miRanda miRanda
chr17 34173972 34173972 1 + G T rs76785014 34173986 + 34173966 34174006 41 TCCTTTGTCTCTGACATGATCCATAGTGAAATTGCCAGAGT TCCTTTTTCTCTGACATGATCCATAGTGAAATTGCCAGAGT < 41bp 1 0.395991276926934 1 0.203988194465637 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34173986 chr17:34173972 nonsynonymous SNV 0.992 1 7 Nm_associated_SNPs_90 0 0 1 1 34173965 34173987 mRNA hsa-miR-190 TAF15 miRanda miRanda
chr19 12024455 12024455 1 + C T rs169404 12024436 + 12024416 12024456 41 GGCTGGTCTTGAACTCCAGACCTCATGATTCGCCTGCCTCG GGCTGGTCTTGAACTCCAGACCTCATGATTCGCCTGCCTTG < 41bp 1 0.292470387263371 1 0.0756696164608002 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control ZNF69 ENSG00000198429 UTR3 Human protein_coding chr19:12024436 chr19:12024455 . . 0 40 Nm_associated_SNPs_96 0 0 1 1 12024453 12024474 mRNA hsa-miR-338-3p ZNF69 miRanda miRanda
chr20 57485812 57485812 1 + C T rs8386 57485811 + 57485791 57485831 41 CTGCGCTGTGGACACTGAGAACATCCGCCGTGTGTTCAACG CTGCGCTGTGGACACTGAGAATATCCGCCGTGTGTTCAACG < 41bp 1 0.000127599759513362 1 0.00321504473686218 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485811 chr20:57485812 synonymous SNV . 0 22 Nm_associated_SNPs_105 0 0 1 1 57485796 57485817 mRNA hsa-miR-876-5p GNAS miRanda miRanda
chr11 65271994 65271994 1 + G C BLCA 65271992 + 65271972 65272012 41 TGAGTGATAAAGGCTGAGTGTTGAGGAAATTTCTGCAGTTT TGAGTGATAAAGGCTGAGTGTTCAGGAAATTTCTGCAGTTT < 41bp 1 0.300709556709768 1 0.993560671806335 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271992 chr11:65271994 . . 0 23 Nm_associated_SNPs_126 0 0 1 2 65271979 65272000 lncRNA hsa-miR-670-3p MALAT1 miRanda starBase2
chr11 65271994 65271994 1 + G C BLCA 65271992 + 65271972 65272012 41 TGAGTGATAAAGGCTGAGTGTTGAGGAAATTTCTGCAGTTT TGAGTGATAAAGGCTGAGTGTTCAGGAAATTTCTGCAGTTT < 41bp 1 0.300709556709768 1 0.993560671806335 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271992 chr11:65271994 . . 0 23 Nm_associated_SNPs_126 0 0 1 2 65271990 65272000 lncRNA hsa-miR-670-3p MALAT1 miRanda starBase2
chr11 47259489 47259489 1 + C T BLCA 47259499 + 47259479 47259519 41 TCGACGTGTTCGATGGAAACTCAGGGAAGATGATGTGTCAG TCGACGTGTTTGATGGAAACTCAGGGAAGATGATGTGTCAG < 41bp 1 0.760971709757036 1 0.754179239273071 experiment 0.478056580485928 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control DDB2 ENSG00000134574 CDS Human protein_coding chr11:47259499 chr11:47259489 synonymous SNV . 0 11 Nm_associated_SNPs_129 0 0 1 2 47259480 47259505 mRNA hsa-miR-125b DDB2 miRanda miRanda
chr11 47259489 47259489 1 + C T BLCA 47259499 + 47259479 47259519 41 TCGACGTGTTCGATGGAAACTCAGGGAAGATGATGTGTCAG TCGACGTGTTTGATGGAAACTCAGGGAAGATGATGTGTCAG < 41bp 1 0.760971709757036 1 0.754179239273071 experiment 0.478056580485928 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control DDB2 ENSG00000134574 CDS Human protein_coding chr11:47259499 chr11:47259489 synonymous SNV . 0 11 Nm_associated_SNPs_129 0 0 1 2 47259480 47259505 mRNA hsa-miR-125a-5p DDB2 miRanda miRanda
chr10 62553724 62553724 1 + G A BLCA 62553719 + 62553699 62553739 41 TTAATGATTTGGACAATCAGATTAAGAAGATGTAGCTTTCT TTAATGATTTGGACAATCAGATTAAAAAGATGTAGCTTTCT < 41bp 1 0.00241682444237341 1 0.00193244218826294 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control CDK1 ENSG00000170312 CDS Human protein_coding chr10:62553719 chr10:62553724 synonymous SNV . 0 26 Nm_associated_SNPs_131 0 0 1 2 62553713 62553735 mRNA hsa-miR-221 CDK1 miRanda miRanda
chr10 62553724 62553724 1 + G A BLCA 62553719 + 62553699 62553739 41 TTAATGATTTGGACAATCAGATTAAGAAGATGTAGCTTTCT TTAATGATTTGGACAATCAGATTAAAAAGATGTAGCTTTCT < 41bp 1 0.00241682444237341 1 0.00193244218826294 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control CDK1 ENSG00000170312 CDS Human protein_coding chr10:62553719 chr10:62553724 synonymous SNV . 0 26 Nm_associated_SNPs_131 0 0 1 2 62553713 62553735 mRNA hsa-miR-222 CDK1 miRanda miRanda
chr17 38144965 38144965 1 + G C CESC 38144963 + 38144943 38144983 41 AGATCTCTGATGATCTGATGCAGAAGATCAGTACTCAGAAC AGATCTCTGATGATCTGATGCACAAGATCAGTACTCAGAAC < 41bp 1 0.707936012713763 1 0.755206704139709 experiment 0.584127974572474 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38144963 chr17:38144965 nonsynonymous SNV 1.000 2 23 Nm_associated_SNPs_160 0 0 1 1 38144944 38144968 mRNA hsa-miR-544 PSMD3 miRanda miRanda
chr19 49469847 49469847 1 + A G CESC 49469860 + 49469840 49469880 41 CTCTGTGACTTCCTGGAGACTCACTTCCTAGATGAGGAAGT CTCTGTGGCTTCCTGGAGACTCACTTCCTAGATGAGGAAGT < 41bp 1 0.5118714252107 1 0.429354190826416 experiment 0.976257149578601 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469860 chr19:49469847 nonsynonymous SNV 1.000 1 8 Nm_associated_SNPs_164 0 0 1 1 49469832 49469851 mRNA hsa-miR-224 FTL miRanda miRanda
chr1 145281687 145281687 1 + A T CESC 145281677 + 145281657 145281697 41 CCTGTCGGCAGACTGGTGACTTCACTTTTGAGTGCAACTGC CCTGTCGGCAGACTGGTGACTTCACTTTTGTGTGCAACTGC < 41bp 1 0.570798889721306 1 0.984382629394531 experiment 0.858402220557387 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control NOTCH2NL ENSG00000213240;ENSG00000255168 CDS Human other chr1:145281677 chr1:145281687 nonsynonymous SNV 0.992 2 31 Nm_associated_SNPs_166 0 0 0 2 145281676 145281697 mRNA hsa-miR-148a NOTCH2NL miRanda miRanda
chr1 145281687 145281687 1 + A T CESC 145281677 + 145281657 145281697 41 CCTGTCGGCAGACTGGTGACTTCACTTTTGAGTGCAACTGC CCTGTCGGCAGACTGGTGACTTCACTTTTGTGTGCAACTGC < 41bp 1 0.570798889721306 1 0.984382629394531 experiment 0.858402220557387 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control NOTCH2NL ENSG00000213240;ENSG00000255168 CDS Human other chr1:145281677 chr1:145281687 nonsynonymous SNV 0.992 2 31 Nm_associated_SNPs_166 0 0 0 2 145281676 145281697 mRNA hsa-miR-148b NOTCH2NL miRanda miRanda
chrX 77378799 77378799 1 + T C COAD 77378802 + 77378782 77378822 41 CCTGTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGC CCTGTTGACTTTGTCACCGCTGACAAGTTTGATGAGAATGC < 41bp 1 0.64144911487394 1 0.0594085156917572 experiment 0.717101770252119 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378802 chrX:77378799 synonymous SNV . 0 18 Nm_associated_SNPs_196 0 0 1 4 77378784 77378805 mRNA hsa-miR-27a PGK1 miRanda miRanda
chrX 77378799 77378799 1 + T C COAD 77378802 + 77378782 77378822 41 CCTGTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGC CCTGTTGACTTTGTCACCGCTGACAAGTTTGATGAGAATGC < 41bp 1 0.64144911487394 1 0.0594085156917572 experiment 0.717101770252119 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378802 chrX:77378799 synonymous SNV . 0 18 Nm_associated_SNPs_196 0 0 1 4 77378784 77378805 mRNA hsa-miR-27b PGK1 miRanda miRanda
chrX 77378799 77378799 1 + T C COAD 77378802 + 77378782 77378822 41 CCTGTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGC CCTGTTGACTTTGTCACCGCTGACAAGTTTGATGAGAATGC < 41bp 1 0.64144911487394 1 0.0594085156917572 experiment 0.717101770252119 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378802 chrX:77378799 synonymous SNV . 0 18 Nm_associated_SNPs_196 0 0 1 4 77378778 77378800 mRNA hsa-miR-130a PGK1 miRanda miRanda
chrX 77378799 77378799 1 + T C COAD 77378802 + 77378782 77378822 41 CCTGTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGC CCTGTTGACTTTGTCACCGCTGACAAGTTTGATGAGAATGC < 41bp 1 0.64144911487394 1 0.0594085156917572 experiment 0.717101770252119 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378802 chrX:77378799 synonymous SNV . 0 18 Nm_associated_SNPs_196 0 0 1 4 77378778 77378800 mRNA hsa-miR-130b PGK1 miRanda miRanda
chr1 145281663 145281663 1 + G T COAD 145281677 + 145281657 145281697 41 CCTGTCGGCAGACTGGTGACTTCACTTTTGAGTGCAACTGC CCTGTCTGCAGACTGGTGACTTCACTTTTGAGTGCAACTGC < 41bp 1 0.727853087988114 1 0.983007311820984 experiment 0.544293824023772 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control NOTCH2NL ENSG00000213240;ENSG00000255168 CDS Human other chr1:145281677 chr1:145281663 nonsynonymous SNV 0.992 1 7 Nm_associated_SNPs_220 0 0 0 1 145281660 145281679 mRNA hsa-miR-224 NOTCH2NL miRanda miRanda
chr20 57484444 57484444 1 + G C ESCA 57484441 + 57484421 57484461 41 GTGTCCTGACTTCTGGAATCTTTGAGACCAAGTTCCAGGTG GTGTCCTGACTTCTGGAATCTTTCAGACCAAGTTCCAGGTG < 41bp 1 0.208357971581765 1 0.941318035125732 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57484441 chr20:57484444 nonsynonymous SNV 1.000 5 24 Nm_associated_SNPs_242 0 0 1 2 57484438 57484459 mRNA hsa-miR-378 GNAS miRanda miRanda
chr20 57484444 57484444 1 + G C ESCA 57484441 + 57484421 57484461 41 GTGTCCTGACTTCTGGAATCTTTGAGACCAAGTTCCAGGTG GTGTCCTGACTTCTGGAATCTTTCAGACCAAGTTCCAGGTG < 41bp 1 0.208357971581765 1 0.941318035125732 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57484441 chr20:57484444 nonsynonymous SNV 1.000 5 24 Nm_associated_SNPs_242 0 0 1 2 57484437 57484459 mRNA hsa-miR-422a GNAS miRanda miRanda
chr15 43678414 43678414 1 + G A ESCA 43678404 + 43678384 43678424 41 GGTGTCTTCCTATTTTGCAGGATCCATTTTGAAAAACCAGG GGTGTCTTCCTATTTTGCAGGATCCATTTTAAAAAACCAGG < 41bp 1 0.511261070267751 1 0.0156655013561249 experiment 0.977477859464498 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43678404 chr15:43678414 synonymous SNV . 0 31 Nm_associated_SNPs_244 0 0 1 8 43678411 43678434 mRNA hsa-miR-302a TUBGCP4 miRanda miRanda
chr15 43678414 43678414 1 + G A ESCA 43678404 + 43678384 43678424 41 GGTGTCTTCCTATTTTGCAGGATCCATTTTGAAAAACCAGG GGTGTCTTCCTATTTTGCAGGATCCATTTTAAAAAACCAGG < 41bp 1 0.511261070267751 1 0.0156655013561249 experiment 0.977477859464498 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43678404 chr15:43678414 synonymous SNV . 0 31 Nm_associated_SNPs_244 0 0 1 8 43678411 43678434 mRNA hsa-miR-302b TUBGCP4 miRanda miRanda
chr15 43678414 43678414 1 + G A ESCA 43678404 + 43678384 43678424 41 GGTGTCTTCCTATTTTGCAGGATCCATTTTGAAAAACCAGG GGTGTCTTCCTATTTTGCAGGATCCATTTTAAAAAACCAGG < 41bp 1 0.511261070267751 1 0.0156655013561249 experiment 0.977477859464498 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43678404 chr15:43678414 synonymous SNV . 0 31 Nm_associated_SNPs_244 0 0 1 8 43678411 43678434 mRNA hsa-miR-302c TUBGCP4 miRanda miRanda
chr15 43678414 43678414 1 + G A ESCA 43678404 + 43678384 43678424 41 GGTGTCTTCCTATTTTGCAGGATCCATTTTGAAAAACCAGG GGTGTCTTCCTATTTTGCAGGATCCATTTTAAAAAACCAGG < 41bp 1 0.511261070267751 1 0.0156655013561249 experiment 0.977477859464498 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43678404 chr15:43678414 synonymous SNV . 0 31 Nm_associated_SNPs_244 0 0 1 8 43678411 43678434 mRNA hsa-miR-302d TUBGCP4 miRanda miRanda
chr15 43678414 43678414 1 + G A ESCA 43678404 + 43678384 43678424 41 GGTGTCTTCCTATTTTGCAGGATCCATTTTGAAAAACCAGG GGTGTCTTCCTATTTTGCAGGATCCATTTTAAAAAACCAGG < 41bp 1 0.511261070267751 1 0.0156655013561249 experiment 0.977477859464498 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43678404 chr15:43678414 synonymous SNV . 0 31 Nm_associated_SNPs_244 0 0 1 8 43678409 43678434 mRNA hsa-miR-373 TUBGCP4 miRanda miRanda
chr15 43678414 43678414 1 + G A ESCA 43678404 + 43678384 43678424 41 GGTGTCTTCCTATTTTGCAGGATCCATTTTGAAAAACCAGG GGTGTCTTCCTATTTTGCAGGATCCATTTTAAAAAACCAGG < 41bp 1 0.511261070267751 1 0.0156655013561249 experiment 0.977477859464498 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43678404 chr15:43678414 synonymous SNV . 0 31 Nm_associated_SNPs_244 0 0 1 8 43678411 43678434 mRNA hsa-miR-520e TUBGCP4 miRanda miRanda
chr15 43678414 43678414 1 + G A ESCA 43678404 + 43678384 43678424 41 GGTGTCTTCCTATTTTGCAGGATCCATTTTGAAAAACCAGG GGTGTCTTCCTATTTTGCAGGATCCATTTTAAAAAACCAGG < 41bp 1 0.511261070267751 1 0.0156655013561249 experiment 0.977477859464498 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43678404 chr15:43678414 synonymous SNV . 0 31 Nm_associated_SNPs_244 0 0 1 8 43678411 43678434 mRNA hsa-miR-520b TUBGCP4 miRanda miRanda
chr15 43678414 43678414 1 + G A ESCA 43678404 + 43678384 43678424 41 GGTGTCTTCCTATTTTGCAGGATCCATTTTGAAAAACCAGG GGTGTCTTCCTATTTTGCAGGATCCATTTTAAAAAACCAGG < 41bp 1 0.511261070267751 1 0.0156655013561249 experiment 0.977477859464498 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43678404 chr15:43678414 synonymous SNV . 0 31 Nm_associated_SNPs_244 0 0 1 8 43678410 43678434 mRNA hsa-miR-520c-3p TUBGCP4 miRanda miRanda
chr11 65271648 65271648 1 + T C GBM 65271644 + 65271624 65271664 41 AGCCATTCAGGATTTTGAATTGCATATGAGTGCTTGGCTCT AGCCATTCAGGATTTTGAATTGCACATGAGTGCTTGGCTCT < 41bp 1 0.705455606952315 1 0.891833961009979 experiment 0.589088786095369 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271644 chr11:65271648 . . 0 25 Nm_associated_SNPs_262 0 0 1 1 65271646 65271671 lncRNA hsa-miR-1252-5p MALAT1 miRanda starBase2
chr11 65270998 65270998 1 + G A KIRP 65271003 + 65270983 65271023 41 ATAGCATGATGTGCTGTTAGAATCAGATGTTACTGCTAAAA ATAGCATGATGTGCTATTAGAATCAGATGTTACTGCTAAAA < 41bp 1 0.0490205834815285 1 0.00377148389816284 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271003 chr11:65270998 . . 0 16 Nm_associated_SNPs_281 0 0 1 1 65270994 65271017 lncRNA hsa-miR-802 MALAT1 miRanda starBase2
chr3 186505350 186505350 1 + G T LUAD 186505368 + 186505348 186505388 41 GTGTTCTGATCACTACTGACTTGTTGGTAAGTCTCTTAATG GTTTTCTGATCACTACTGACTTGTTGGTAAGTCTCTTAATG < 41bp 1 0.65584212350714 1 0.993293285369873 experiment 0.688315752985719 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control|28504680;GSE90165;Nm-seq;HEK293T;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186505368 chr3:186505350 nonsynonymous SNV 1.000 4 3 Nm_associated_SNPs_308 0 0 1 1 186505339 186505359 mRNA hsa-miR-383 EIF4A2 miRanda miRanda
chr20 57561906 57561906 1 + C G LUAD 57561901 + 57561881 57561921 41 GACTGTGAACCTGCTGGCCGAGTGGCTCATTCAGACAGGTG GACTGTGAACCTGCTGGCCGAGTGGGTCATTCAGACAGGTG < 41bp 1 0.000107211812053257 1 0.00519415736198425 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control NELFCD ENSG00000101158 CDS Human protein_coding chr20:57561901 chr20:57561906 nonsynonymous SNV 1.000 4 26 Nm_associated_SNPs_319 0 0 1 2 57561904 57561918 mRNA hsa-miR-141 TH1L miRanda miRanda
chr20 57561906 57561906 1 + C G LUAD 57561901 + 57561881 57561921 41 GACTGTGAACCTGCTGGCCGAGTGGCTCATTCAGACAGGTG GACTGTGAACCTGCTGGCCGAGTGGGTCATTCAGACAGGTG < 41bp 1 0.000107211812053257 1 0.00519415736198425 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control NELFCD ENSG00000101158 CDS Human protein_coding chr20:57561901 chr20:57561906 nonsynonymous SNV 1.000 4 26 Nm_associated_SNPs_319 0 0 1 2 57561904 57561918 mRNA hsa-miR-200a TH1L miRanda miRanda
chr10 17275634 17275634 1 + G T LUAD 17275615 + 17275595 17275635 41 AATGCGTCTCTGGCACGTCTTGACCTTGAACGCAAAGTGGA AATGCGTCTCTGGCACGTCTTGACCTTGAACGCAAAGTGTA < 41bp 1 0.7973596897041 1 0.0654613375663757 experiment 0.4052806205918 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275615 chr10:17275634 stopgain 1.000 1 40 Nm_associated_SNPs_336 0 0 1 1 17275634 17275655 mRNA hsa-miR-216b VIM miRanda miRanda
chr17 34173983 34173983 1 + G C LUSC 34173986 + 34173966 34174006 41 TCCTTTGTCTCTGACATGATCCATAGTGAAATTGCCAGAGT TCCTTTGTCTCTGACATCATCCATAGTGAAATTGCCAGAGT < 41bp 1 0.428198133090762 1 0.403684228658676 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34173986 chr17:34173983 nonsynonymous SNV 1.000 1 18 Nm_associated_SNPs_349 0 0 1 2 34173981 34174004 mRNA hsa-miR-182 TAF15 miRanda miRanda
chr17 34173983 34173983 1 + G C LUSC 34173986 + 34173966 34174006 41 TCCTTTGTCTCTGACATGATCCATAGTGAAATTGCCAGAGT TCCTTTGTCTCTGACATCATCCATAGTGAAATTGCCAGAGT < 41bp 1 0.428198133090762 1 0.403684228658676 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34173986 chr17:34173983 nonsynonymous SNV 1.000 1 18 Nm_associated_SNPs_349 0 0 1 2 34173965 34173987 mRNA hsa-miR-190 TAF15 miRanda miRanda
chr11 65268757 65268757 1 + A T LUSC 65268767 + 65268747 65268787 41 AGGTCTGTCTAGAATCCTAAAGGCAAATGACTCAAGGTGTA AGGTCTGTCTTGAATCCTAAAGGCAAATGACTCAAGGTGTA < 41bp 1 0.0886349655362672 1 0.0159855484962463 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268767 chr11:65268757 . . 0 11 Nm_associated_SNPs_362 0 0 1 3 65268755 65268777 lncRNA hsa-miR-579-3p MALAT1 miRanda starBase2
chr11 65268757 65268757 1 + A T LUSC 65268767 + 65268747 65268787 41 AGGTCTGTCTAGAATCCTAAAGGCAAATGACTCAAGGTGTA AGGTCTGTCTTGAATCCTAAAGGCAAATGACTCAAGGTGTA < 41bp 1 0.0886349655362672 1 0.0159855484962463 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268767 chr11:65268757 . . 0 11 Nm_associated_SNPs_362 0 0 1 3 65268756 65268777 lncRNA hsa-miR-664b-3p MALAT1 miRanda starBase2
chr11 65268757 65268757 1 + A T LUSC 65268767 + 65268747 65268787 41 AGGTCTGTCTAGAATCCTAAAGGCAAATGACTCAAGGTGTA AGGTCTGTCTTGAATCCTAAAGGCAAATGACTCAAGGTGTA < 41bp 1 0.0886349655362672 1 0.0159855484962463 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268767 chr11:65268757 . . 0 11 Nm_associated_SNPs_362 0 0 1 3 65268744 65268767 lncRNA hsa-miR-651-5p MALAT1 miRanda starBase2
chr17 7481745 7481745 1 + G C LUSC 7481744 + 7481724 7481764 41 AAGAGGACTCTTCGAGACATTGAGACCTTCTACAACACCTC AAGAGGACTCTTCGAGACATTCAGACCTTCTACAACACCTC < 41bp 1 0.34536820437408 1 0.80922794342041 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7481744 chr17:7481745 nonsynonymous SNV 0.979 1 22 Nm_associated_SNPs_378 0 0 1 1 7481744 7481764 mRNA hsa-miR-296-3p EIF4A1 miRanda miRanda
chr11 65267905 65267905 1 + G A LUSC 65267903 + 65267883 65267923 41 GTGGATTCAGTGAATCTAGGAAGACAGCAGCAGACAGGATT GTGGATTCAGTGAATCTAGGAAAACAGCAGCAGACAGGATT < 41bp 1 0.142505606813243 1 0.00213459134101868 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267903 chr11:65267905 . . 0 23 Nm_associated_SNPs_380 0 0 1 1 65267882 65267905 lncRNA hsa-miR-384 MALAT1 miRanda starBase2
chr20 57485817 57485817 1 + G A OV 57485811 + 57485791 57485831 41 CTGCGCTGTGGACACTGAGAACATCCGCCGTGTGTTCAACG CTGCGCTGTGGACACTGAGAACATCCACCGTGTGTTCAACG < 41bp 1 0.000129511627945533 1 0.00311493873596191 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485811 chr20:57485817 nonsynonymous SNV 1.000 4 27 Nm_associated_SNPs_383 0 0 1 1 57485796 57485817 mRNA hsa-miR-876-5p GNAS miRanda miRanda
chr11 65271983 65271983 1 + G A OV 65271992 + 65271972 65272012 41 TGAGTGATAAAGGCTGAGTGTTGAGGAAATTTCTGCAGTTT TGAGTGATAAAAGCTGAGTGTTGAGGAAATTTCTGCAGTTT < 41bp 1 0.743966350125059 1 0.987204074859619 experiment 0.512067299749881 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271992 chr11:65271983 . . 0 12 Nm_associated_SNPs_384 0 0 1 1 65271979 65272000 lncRNA hsa-miR-670-3p MALAT1 miRanda starBase2
chr20 57484452 57484452 1 + G C OV 57484441 + 57484421 57484461 41 GTGTCCTGACTTCTGGAATCTTTGAGACCAAGTTCCAGGTG GTGTCCTGACTTCTGGAATCTTTGAGACCAACTTCCAGGTG < 41bp 1 0.224560731138759 1 0.942628383636475 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57484441 chr20:57484452 nonsynonymous SNV 1.000 4 32 Nm_associated_SNPs_385 0 0 1 2 57484438 57484459 mRNA hsa-miR-378 GNAS miRanda miRanda
chr20 57484452 57484452 1 + G C OV 57484441 + 57484421 57484461 41 GTGTCCTGACTTCTGGAATCTTTGAGACCAAGTTCCAGGTG GTGTCCTGACTTCTGGAATCTTTGAGACCAACTTCCAGGTG < 41bp 1 0.224560731138759 1 0.942628383636475 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57484441 chr20:57484452 nonsynonymous SNV 1.000 4 32 Nm_associated_SNPs_385 0 0 1 2 57484437 57484459 mRNA hsa-miR-422a GNAS miRanda miRanda
chr20 57484452 57484452 1 + G C OV 57484443 + 57484423 57484463 41 GTCCTGACTTCTGGAATCTTTGAGACCAAGTTCCAGGTGGA GTCCTGACTTCTGGAATCTTTGAGACCAACTTCCAGGTGGA < 41bp 1 0.783045242722144 1 0.99628484249115 experiment 0.433909514555712 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57484443 chr20:57484452 nonsynonymous SNV 1.000 4 30 Nm_associated_SNPs_386 0 0 1 2 57484438 57484459 mRNA hsa-miR-378 GNAS miRanda miRanda
chr20 57484452 57484452 1 + G C OV 57484443 + 57484423 57484463 41 GTCCTGACTTCTGGAATCTTTGAGACCAAGTTCCAGGTGGA GTCCTGACTTCTGGAATCTTTGAGACCAACTTCCAGGTGGA < 41bp 1 0.783045242722144 1 0.99628484249115 experiment 0.433909514555712 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57484443 chr20:57484452 nonsynonymous SNV 1.000 4 30 Nm_associated_SNPs_386 0 0 1 2 57484437 57484459 mRNA hsa-miR-422a GNAS miRanda miRanda
chr9 32418431 32418431 1 + G T OV 32418429 + 32418409 32418449 41 AAGAGTGGTATTTGATCAGGATGGATATTATTACCCAGACA AAGAGTGGTATTTGATCAGGATTGATATTATTACCCAGACA < 41bp 1 9.15339533503712e-05 1 0.00665739178657532 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control ACO1 ENSG00000122729 CDS Human protein_coding chr9:32418429 chr9:32418431 stopgain 0.998 1 23 Nm_associated_SNPs_388 0 0 0 1 32418431 32418455 mRNA hsa-miR-485-5p ACO1 miRanda miRanda
chr11 65271006 65271006 1 + C G PRAD 65271003 + 65270983 65271023 41 ATAGCATGATGTGCTGTTAGAATCAGATGTTACTGCTAAAA ATAGCATGATGTGCTGTTAGAATGAGATGTTACTGCTAAAA < 41bp 1 0.00305970559184744 1 0.0031760036945343 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271003 chr11:65271006 . . 0 24 Nm_associated_SNPs_395 0 0 1 2 65271002 65271022 lncRNA hsa-miR-374b-3p MALAT1 miRanda starBase2
chr11 65271006 65271006 1 + C G PRAD 65271003 + 65270983 65271023 41 ATAGCATGATGTGCTGTTAGAATCAGATGTTACTGCTAAAA ATAGCATGATGTGCTGTTAGAATGAGATGTTACTGCTAAAA < 41bp 1 0.00305970559184744 1 0.0031760036945343 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271003 chr11:65271006 . . 0 24 Nm_associated_SNPs_395 0 0 1 2 65270994 65271017 lncRNA hsa-miR-802 MALAT1 miRanda starBase2
chr10 62553727 62553727 1 + G A SKCM 62553719 + 62553699 62553739 41 TTAATGATTTGGACAATCAGATTAAGAAGATGTAGCTTTCT TTAATGATTTGGACAATCAGATTAAGAAAATGTAGCTTTCT < 41bp 1 0.158275109198888 1 0.00194859504699707 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control CDK1 ENSG00000170312 CDS Human protein_coding chr10:62553719 chr10:62553727 synonymous SNV . 0 29 Nm_associated_SNPs_450 0 0 1 2 62553713 62553735 mRNA hsa-miR-221 CDK1 miRanda miRanda
chr10 62553727 62553727 1 + G A SKCM 62553719 + 62553699 62553739 41 TTAATGATTTGGACAATCAGATTAAGAAGATGTAGCTTTCT TTAATGATTTGGACAATCAGATTAAGAAAATGTAGCTTTCT < 41bp 1 0.158275109198888 1 0.00194859504699707 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control CDK1 ENSG00000170312 CDS Human protein_coding chr10:62553719 chr10:62553727 synonymous SNV . 0 29 Nm_associated_SNPs_450 0 0 1 2 62553713 62553735 mRNA hsa-miR-222 CDK1 miRanda miRanda
chrX 77378785 77378785 1 + G C SKCM 77378802 + 77378782 77378822 41 CCTGTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGC CCTCTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGC < 41bp 1 0.186072445671345 1 0.0635901093482971 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378802 chrX:77378785 nonsynonymous SNV 1.000 3 4 Nm_associated_SNPs_460 0 0 1 6 77378784 77378805 mRNA hsa-miR-27a PGK1 miRanda miRanda
chrX 77378785 77378785 1 + G C SKCM 77378802 + 77378782 77378822 41 CCTGTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGC CCTCTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGC < 41bp 1 0.186072445671345 1 0.0635901093482971 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378802 chrX:77378785 nonsynonymous SNV 1.000 3 4 Nm_associated_SNPs_460 0 0 1 6 77378784 77378805 mRNA hsa-miR-27b PGK1 miRanda miRanda
chrX 77378785 77378785 1 + G C SKCM 77378802 + 77378782 77378822 41 CCTGTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGC CCTCTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGC < 41bp 1 0.186072445671345 1 0.0635901093482971 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378802 chrX:77378785 nonsynonymous SNV 1.000 3 4 Nm_associated_SNPs_460 0 0 1 6 77378778 77378800 mRNA hsa-miR-130a PGK1 miRanda miRanda
chrX 77378785 77378785 1 + G C SKCM 77378802 + 77378782 77378822 41 CCTGTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGC CCTCTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGC < 41bp 1 0.186072445671345 1 0.0635901093482971 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378802 chrX:77378785 nonsynonymous SNV 1.000 3 4 Nm_associated_SNPs_460 0 0 1 6 77378778 77378800 mRNA hsa-miR-130b PGK1 miRanda miRanda
chrX 77378785 77378785 1 + G C SKCM 77378802 + 77378782 77378822 41 CCTGTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGC CCTCTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGC < 41bp 1 0.186072445671345 1 0.0635901093482971 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378802 chrX:77378785 nonsynonymous SNV 1.000 3 4 Nm_associated_SNPs_460 0 0 1 6 77378768 77378791 mRNA hsa-miR-505 PGK1 miRanda miRanda
chrX 77378785 77378785 1 + G C SKCM 77378802 + 77378782 77378822 41 CCTGTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGC CCTCTTGACTTTGTCACTGCTGACAAGTTTGATGAGAATGC < 41bp 1 0.186072445671345 1 0.0635901093482971 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378802 chrX:77378785 nonsynonymous SNV 1.000 3 4 Nm_associated_SNPs_460 0 0 1 6 77378766 77378790 mRNA hsa-miR-421 PGK1 miRanda miRanda
chr20 57485796 57485796 1 + C A STAD 57485811 + 57485791 57485831 41 CTGCGCTGTGGACACTGAGAACATCCGCCGTGTGTTCAACG CTGCGATGTGGACACTGAGAACATCCGCCGTGTGTTCAACG < 41bp 1 0.000522334808490378 1 0.0028076171875 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485811 chr20:57485796 nonsynonymous SNV 0.999 5 6 Nm_associated_SNPs_476 0 0 1 1 57485796 57485817 mRNA hsa-miR-876-5p GNAS miRanda miRanda
chr7 64528866 64528866 1 + C T STAD 64528853 + 64528833 64528873 41 GAGAAGTGAATTCTGGCTTTTTTTACAAGAGTGCAGAAAGA GAGAAGTGAATTCTGGCTTTTTTTACAAGAGTGTAGAAAGA < 41bp 1 0.637391135623935 1 0.720848321914673 experiment 0.72521772875213 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control CCT6P3 ENSG00000234585 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64528853 chr7:64528866 . . 0 34 Nm_associated_SNPs_485 0 0 0 1 64528851 64528871 mRNA hsa-miR-544 CCT6P3 miRanda miRanda
chrX 153629097 153629097 1 + G T UCEC 153629095 + 153629075 153629115 41 GTTCAATGCTGATGAATTTGAAGACATGGTGGCTGAAAAGC GTTCAATGCTGATGAATTTGAATACATGGTGGCTGAAAAGC < 41bp 1 0.288075249854399 1 0.00314688682556152 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153629095 chrX:153629097 nonsynonymous SNV 1.000 0 23 Nm_associated_SNPs_504 0 0 1 1 153629082 153629109 mRNA hsa-miR-29b RPL10 miRanda miRanda
chrX 153629088 153629088 1 + G T UCEC 153629093 + 153629073 153629113 41 AAGTTCAATGCTGATGAATTTGAAGACATGGTGGCTGAAAA AAGTTCAATGCTGATTAATTTGAAGACATGGTGGCTGAAAA < 41bp 1 0.682139301787568 1 0.0237402021884918 experiment 0.635721396424865 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153629093 chrX:153629088 stopgain 0.986 1 16 Nm_associated_SNPs_507 0 0 1 1 153629082 153629109 mRNA hsa-miR-29b RPL10 miRanda miRanda
chr20 57485816 57485816 1 + C T UCEC 57485811 + 57485791 57485831 41 CTGCGCTGTGGACACTGAGAACATCCGCCGTGTGTTCAACG CTGCGCTGTGGACACTGAGAACATCTGCCGTGTGTTCAACG < 41bp 1 4.29721686384516e-05 1 0.00319579243659973 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485811 chr20:57485816 nonsynonymous SNV 1.000 5 26 Nm_associated_SNPs_509 0 0 1 1 57485796 57485817 mRNA hsa-miR-876-5p GNAS miRanda miRanda
chr1 145281661 145281661 1 + T C UCEC 145281677 + 145281657 145281697 41 CCTGTCGGCAGACTGGTGACTTCACTTTTGAGTGCAACTGC CCTGCCGGCAGACTGGTGACTTCACTTTTGAGTGCAACTGC < 41bp 1 0.72672428244658 1 0.996426582336426 experiment 0.54655143510684 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control NOTCH2NL ENSG00000213240;ENSG00000255168 CDS Human other chr1:145281677 chr1:145281661 synonymous SNV . 0 5 Nm_associated_SNPs_533 0 0 0 1 145281660 145281679 mRNA hsa-miR-224 NOTCH2NL miRanda miRanda
chr11 47259487 47259487 1 + T C UCEC 47259499 + 47259479 47259519 41 TCGACGTGTTCGATGGAAACTCAGGGAAGATGATGTGTCAG TCGACGTGCTCGATGGAAACTCAGGGAAGATGATGTGTCAG < 41bp 1 0.195360372288729 1 0.47601193189621 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control DDB2 ENSG00000134574 CDS Human protein_coding chr11:47259499 chr11:47259487 nonsynonymous SNV 0.999 1 9 Nm_associated_SNPs_560 0 0 1 2 47259480 47259505 mRNA hsa-miR-125b DDB2 miRanda miRanda
chr11 47259487 47259487 1 + T C UCEC 47259499 + 47259479 47259519 41 TCGACGTGTTCGATGGAAACTCAGGGAAGATGATGTGTCAG TCGACGTGCTCGATGGAAACTCAGGGAAGATGATGTGTCAG < 41bp 1 0.195360372288729 1 0.47601193189621 experiment 1 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control DDB2 ENSG00000134574 CDS Human protein_coding chr11:47259499 chr11:47259487 nonsynonymous SNV 0.999 1 9 Nm_associated_SNPs_560 0 0 1 2 47259480 47259505 mRNA hsa-miR-125a-5p DDB2 miRanda miRanda
chr17 34173974 34173974 1 + C T UVM 34173986 + 34173966 34174006 41 TCCTTTGTCTCTGACATGATCCATAGTGAAATTGCCAGAGT TCCTTTGTTTCTGACATGATCCATAGTGAAATTGCCAGAGT < 41bp 1 0.785946903787837 1 0.81227719783783 experiment 0.428106192424327 Functional Loss 28504680;GSE90164;Nm-seq;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34173986 chr17:34173974 synonymous SNV . 0 9 Nm_associated_SNPs_638 0 0 1 1 34173965 34173987 mRNA hsa-miR-190 TAF15 miRanda miRanda