2192 chr1 28975209 28975209 1 + A C rs111868204 28975209 + 28975189 28975229 41 CGGAAGCATAATTTTTTGGTATTTGGGCAGCTGGTGATCGT CGGAAGCATAATTTTTTGGTCTTTGGGCAGCTGGTGATCGT Direct Loss 1 0.755767305465677 1 0.814549684524536 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975209 chr1:28975209 . . 0 21 hm1A_associated_SNPs_1 0 0 1 2 28975197 28975221 mRNA hsa-miR-22 RNU11 miRanda miRanda
2192 chr1 28975209 28975209 1 + A C rs111868204 28975209 + 28975189 28975229 41 CGGAAGCATAATTTTTTGGTATTTGGGCAGCTGGTGATCGT CGGAAGCATAATTTTTTGGTCTTTGGGCAGCTGGTGATCGT Direct Loss 1 0.755767305465677 1 0.814549684524536 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975209 chr1:28975209 . . 0 21 hm1A_associated_SNPs_1 0 0 1 2 28975197 28975221 lncRNA hsa-miR-22-3p AL360012.1 miRanda starBase2
2192 chr2 277995 277995 1 + A G rs6855 277995 + 277975 278015 41 ACTTAATTACATCCAGAAAGAAGGACACTTGTATGCTAGTC ACTTAATTACATCCAGAAAGGAGGACACTTGTATGCTAGTC Direct Loss 1 0.0967396014241167 1 0.10031396150589 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ACP1 ENSG00000143727 UTR3 Human protein_coding chr2:277995 chr2:277995 . . 0 21 hm1A_associated_SNPs_12 0 0 1 4 277987 278009 mRNA hsa-miR-381 ACP1 miRanda miRanda
2192 chr2 277995 277995 1 + A G rs6855 277995 + 277975 278015 41 ACTTAATTACATCCAGAAAGAAGGACACTTGTATGCTAGTC ACTTAATTACATCCAGAAAGGAGGACACTTGTATGCTAGTC Direct Loss 1 0.0967396014241167 1 0.10031396150589 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ACP1 ENSG00000143727 UTR3 Human protein_coding chr2:277995 chr2:277995 . . 0 21 hm1A_associated_SNPs_12 0 0 1 4 277982 278005 mRNA hsa-miR-520c-3p ACP1 miRanda miRanda
2192 chr2 277995 277995 1 + A G rs6855 277995 + 277975 278015 41 ACTTAATTACATCCAGAAAGAAGGACACTTGTATGCTAGTC ACTTAATTACATCCAGAAAGGAGGACACTTGTATGCTAGTC Direct Loss 1 0.0967396014241167 1 0.10031396150589 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ACP1 ENSG00000143727 UTR3 Human protein_coding chr2:277995 chr2:277995 . . 0 21 hm1A_associated_SNPs_12 0 0 1 4 277981 278005 mRNA hsa-miR-520d-3p ACP1 miRanda miRanda
2192 chr2 277995 277995 1 + A G rs6855 277995 + 277975 278015 41 ACTTAATTACATCCAGAAAGAAGGACACTTGTATGCTAGTC ACTTAATTACATCCAGAAAGGAGGACACTTGTATGCTAGTC Direct Loss 1 0.0967396014241167 1 0.10031396150589 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ACP1 ENSG00000143727 UTR3 Human protein_coding chr2:277995 chr2:277995 . . 0 21 hm1A_associated_SNPs_12 0 0 1 4 277987 278009 mRNA hsa-miR-300 ACP1 miRanda miRanda
2192 chr6 31805210 31805210 1 + A G rs11497 31805210 + 31805190 31805230 41 GCCTGTTCTCCTTCCTTGCTATGGTGAGTATCTTTTGTTTT GCCTGTTCTCCTTCCTTGCTGTGGTGAGTATCTTTTGTTTT Direct Loss 1 0.381992357625836 1 0.234254062175751 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control C6orf48 ENSG00000204387 CDS Human protein_coding chr6:31805210 chr6:31805210 synonymous SNV . 0 21 hm1A_associated_SNPs_31 0 0 1 1 31805210 31805212 mRNA hsa-miR-599 C6orf48 miRanda miRanda
2192 chr9 80944838 80944838 1 + A G rs41277905 80944838 + 80944818 80944858 41 GGTTGTTTTTCAATTATGCCATTAAACTAAACATTTCTGTT GGTTGTTTTTCAATTATGCCGTTAAACTAAACATTTCTGTT Direct Loss 1 0.554825604937839 1 0.937973737716675 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control PSAT1 ENSG00000135069 UTR3 Human protein_coding chr9:80944838 chr9:80944838 . . 0 21 hm1A_associated_SNPs_46 1 0 1 2 80944819 80944840 mRNA hsa-miR-183 PSAT1 miRanda miRanda
2192 chr9 80944838 80944838 1 + A G rs41277905 80944838 + 80944818 80944858 41 GGTTGTTTTTCAATTATGCCATTAAACTAAACATTTCTGTT GGTTGTTTTTCAATTATGCCGTTAAACTAAACATTTCTGTT Direct Loss 1 0.554825604937839 1 0.937973737716675 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control PSAT1 ENSG00000135069 UTR3 Human protein_coding chr9:80944838 chr9:80944838 . . 0 21 hm1A_associated_SNPs_46 1 0 1 2 80944835 80944856 mRNA hsa-miR-203 PSAT1 miRanda miRanda
2192 chr10 12292344 12292344 1 + A C rs10951 12292344 + 12292324 12292364 41 GGAGGACGACTGATGAGCGTACTGGAACTGGAGAAGAGGAG GGAGGACGACTGATGAGCGTCCTGGAACTGGAGAAGAGGAG Direct Loss 1 0.610184901727808 1 0.809121429920197 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDC123 ENSG00000151465 UTR3 Human protein_coding chr10:12292344 chr10:12292344 . . 0 21 hm1A_associated_SNPs_50 0 0 1 1 12292337 12292356 mRNA hsa-miR-145 CDC123 miRanda miRanda
2192 chr11 63594898 63594898 1 + A C rs148806230 63594898 + 63594878 63594918 41 CCCACCTCTGTTTGTCCCCCATGACCTCCTCCCACCCTCCC CCCACCTCTGTTTGTCCCCCCTGACCTCCTCCCACCCTCCC Direct Loss 1 0.873236085287316 1 0.995610594749451 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control C11orf84 ENSG00000168005 UTR3 Human protein_coding chr11:63594898 chr11:63594898 . . 0 21 hm1A_associated_SNPs_56 0 0 1 1 63594886 63594906 mRNA hsa-miR-202 C11orf84 miRanda miRanda
2192 chr12 32896366 32896366 1 + A T rs3200103 32896366 + 32896346 32896386 41 GAGAACTATGTAATACTGAGACTTTGTTGACTCAAAACTTG GAGAACTATGTAATACTGAGTCTTTGTTGACTCAAAACTTG Direct Loss 1 0.174381566368463 1 0.190852552652359 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DNM1L ENSG00000087470 UTR3 Human protein_coding chr12:32896366 chr12:32896366 . . 0 21 hm1A_associated_SNPs_59 3 0 1 1 32896355 32896377 mRNA hsa-miR-505 DNM1L miRanda miRanda
2192 chr13 100038271 100038271 1 + A T rs701537 100038271 + 100038251 100038291 41 GCGGGTGAAATGGGATGGAGAAGAACAACAGCAGGCTTCCT GCGGGTGAAATGGGATGGAGTAGAACAACAGCAGGCTTCCT Direct Loss 1 0.132330790314487 1 0.199011862277985 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBAC2 ENSG00000134882 UTR3 Human protein_coding chr13:100038271 chr13:100038271 . . 0 21 hm1A_associated_SNPs_64 0 0 1 1 100038265 100038286 mRNA hsa-miR-370 UBAC2 miRanda miRanda
2192 chrX 70520175 70520175 1 + A G rs11544186 70520175 + 70520155 70520195 41 AGTCTCTAATGTGACTGTTGAGGGCCTGGGGAAACCATGGC AGTCTCTAATGTGACTGTTGGGGGCCTGGGGAAACCATGGC Direct Loss 1 0.422934429607885 1 0.10033968091011 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control BCYRN1 ENSG00000147140 UTR3 Human protein_coding chrX:70520175 chrX:70520175 . . 0 21 hm1A_associated_SNPs_104 0 0 1 1 70520156 70520176 mRNA hsa-miR-421 NONO miRanda miRanda
2192 chrX 48759676 48759676 1 + A C ESCA 48759676 + 48759656 48759696 41 GACAAGGTAGACAGAGAGAGAGAGCGAGACAGGGAACGGGA GACAAGGTAGACAGAGAGAGCGAGCGAGACAGGGAACGGGA Direct Loss 1 0.86483731597857 1 0.978932321071625 experiment 1 Functional Loss 26863196;GSE70486;m1A-seq;HEK293;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759676 chrX:48759676 nonsynonymous SNV 0.999 2 21 hm1A_associated_SNPs_123 0 0 1 1 48759669 48759690 mRNA hsa-miR-339-5p PQBP1 miRanda miRanda
2192 chr11 65268685 65268685 1 + A G HNSC 65268685 + 65268665 65268705 41 GTGTAACTGAGGCGGGGGGGAGTTTTCAGTATTTTTTTTTG GTGTAACTGAGGCGGGGGGGGGTTTTCAGTATTTTTTTTTG Direct Loss 1 0.10415133906439 1 0.0859196484088898 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268685 chr11:65268685 . . 0 21 hm1A_associated_SNPs_124 0 0 1 3 65268677 65268698 lncRNA hsa-miR-200b-3p MALAT1 miRanda starBase2
2192 chr11 65268685 65268685 1 + A G HNSC 65268685 + 65268665 65268705 41 GTGTAACTGAGGCGGGGGGGAGTTTTCAGTATTTTTTTTTG GTGTAACTGAGGCGGGGGGGGGTTTTCAGTATTTTTTTTTG Direct Loss 1 0.10415133906439 1 0.0859196484088898 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268685 chr11:65268685 . . 0 21 hm1A_associated_SNPs_124 0 0 1 3 65268676 65268698 lncRNA hsa-miR-200c-3p MALAT1 miRanda starBase2
2192 chr11 65268685 65268685 1 + A G HNSC 65268685 + 65268665 65268705 41 GTGTAACTGAGGCGGGGGGGAGTTTTCAGTATTTTTTTTTG GTGTAACTGAGGCGGGGGGGGGTTTTCAGTATTTTTTTTTG Direct Loss 1 0.10415133906439 1 0.0859196484088898 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268685 chr11:65268685 . . 0 21 hm1A_associated_SNPs_124 0 0 1 3 65268677 65268698 lncRNA hsa-miR-429 MALAT1 miRanda starBase2
2192 chr1 24022342 24022342 1 + A T KIRC 24022342 + 24022322 24022362 41 AGAAGCGCAGGACAGGCTGCATTGGGGCCAAACACAGAATC AGAAGCGCAGGACAGGCTGCTTTGGGGCCAAACACAGAATC Direct Loss 1 0.939653101187313 1 0.487022876739502 experiment 1 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022342 chr1:24022342 nonsynonymous SNV 1.000 2 21 hm1A_associated_SNPs_126 0 0 1 1 24022340 24022369 mRNA hsa-miR-450a RPL11 miRanda miRanda
2192 chr11 117263796 117263796 1 + A G LIHC 117263796 + 117263776 117263816 41 GTTGGACAAGATGAAGGAGGAGCACCAGCAAGTGATGGCTA GTTGGACAAGATGAAGGAGGGGCACCAGCAAGTGATGGCTA Direct Loss 1 0.523301933304089 1 0.729773461818695 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control CEP164 ENSG00000110274 CDS Human protein_coding chr11:117263796 chr11:117263796 nonsynonymous SNV 0.985 3 21 hm1A_associated_SNPs_133 0 0 1 1 117263783 117263805 mRNA hsa-miR-138 CEP164 miRanda miRanda
2192 chr9 139726757 139726757 1 + A G LUSC 139726757 + 139726737 139726777 41 TCCGCTATGCTGAGTCTTCCATGAAGAACAGCTTCGGCCTA TCCGCTATGCTGAGTCTTCCGTGAAGAACAGCTTCGGCCTA Direct Loss 1 0.809215380474795 1 0.888239502906799 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139726757 chr9:139726757 nonsynonymous SNV 1.000 4 21 hm1A_associated_SNPs_142 0 0 1 1 139726734 139726757 mRNA hsa-miR-7 C9orf86 miRanda miRanda
2192 chr1 910323 910323 1 + G A rs375581213 910326 + 910306 910346 41 AGAGAAAGGTCAGCAGGGTCAGAGTATGTGAGGTCAGAGGG AGAGAAAGGTCAGCAGGATCAGAGTATGTGAGGTCAGAGGG < 41bp 1 0.269218683319967 1 0.244381189346313 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control PLEKHN1 ENSG00000187583 UTR3 Human protein_coding chr1:910326 chr1:910323 . . 0 18 hm1A_associated_SNPs_168 0 0 0 2 910302 910323 mRNA hsa-miR-370 PLEKHN1 miRanda miRanda
2192 chr1 910323 910323 1 + G A rs375581213 910326 + 910306 910346 41 AGAGAAAGGTCAGCAGGGTCAGAGTATGTGAGGTCAGAGGG AGAGAAAGGTCAGCAGGATCAGAGTATGTGAGGTCAGAGGG < 41bp 1 0.269218683319967 1 0.244381189346313 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control PLEKHN1 ENSG00000187583 UTR3 Human protein_coding chr1:910326 chr1:910323 . . 0 18 hm1A_associated_SNPs_168 0 0 0 2 910307 910326 mRNA hsa-miR-504 PLEKHN1 miRanda miRanda
2192 chr1 28975216 28975216 1 + C A rs192996376 28975209 + 28975189 28975229 41 CGGAAGCATAATTTTTTGGTATTTGGGCAGCTGGTGATCGT CGGAAGCATAATTTTTTGGTATTTGGGAAGCTGGTGATCGT < 41bp 1 0.756722262197047 1 0.816694140434265 experiment 0.486555475605905 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975209 chr1:28975216 . . 0 28 hm1A_associated_SNPs_199 0 0 1 2 28975197 28975221 mRNA hsa-miR-22 RNU11 miRanda miRanda
2192 chr1 28975216 28975216 1 + C A rs192996376 28975209 + 28975189 28975229 41 CGGAAGCATAATTTTTTGGTATTTGGGCAGCTGGTGATCGT CGGAAGCATAATTTTTTGGTATTTGGGAAGCTGGTGATCGT < 41bp 1 0.756722262197047 1 0.816694140434265 experiment 0.486555475605905 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975209 chr1:28975216 . . 0 28 hm1A_associated_SNPs_199 0 0 1 2 28975197 28975221 lncRNA hsa-miR-22-3p AL360012.1 miRanda starBase2
2192 chr1 28975221 28975221 1 + G A rs143926421 28975209 + 28975189 28975229 41 CGGAAGCATAATTTTTTGGTATTTGGGCAGCTGGTGATCGT CGGAAGCATAATTTTTTGGTATTTGGGCAGCTAGTGATCGT < 41bp 1 0.748395463392363 1 0.614348471164703 experiment 0.503209073215273 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975209 chr1:28975221 . . 0 33 hm1A_associated_SNPs_200 0 0 1 2 28975197 28975221 mRNA hsa-miR-22 RNU11 miRanda miRanda
2192 chr1 28975221 28975221 1 + G A rs143926421 28975209 + 28975189 28975229 41 CGGAAGCATAATTTTTTGGTATTTGGGCAGCTGGTGATCGT CGGAAGCATAATTTTTTGGTATTTGGGCAGCTAGTGATCGT < 41bp 1 0.748395463392363 1 0.614348471164703 experiment 0.503209073215273 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975209 chr1:28975221 . . 0 33 hm1A_associated_SNPs_200 0 0 1 2 28975197 28975221 lncRNA hsa-miR-22-3p AL360012.1 miRanda starBase2
2192 chr1 32697049 32697049 1 + G A rs189268974 32697062 + 32697042 32697082 41 AGATCACGTCATTGCACTCCATCCTGAGCCACAAGAGCAAA AGATCACATCATTGCACTCCATCCTGAGCCACAAGAGCAAA < 41bp 1 0.732034490066219 1 0.983235239982605 experiment 0.535931019867562 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control EIF3I ENSG00000084623 UTR3 Human protein_coding chr1:32697062 chr1:32697049 . . 0 8 hm1A_associated_SNPs_203 0 0 1 6 32697025 32697050 mRNA hsa-miR-187 EIF3I miRanda miRanda
2192 chr1 32697049 32697049 1 + G A rs189268974 32697062 + 32697042 32697082 41 AGATCACGTCATTGCACTCCATCCTGAGCCACAAGAGCAAA AGATCACATCATTGCACTCCATCCTGAGCCACAAGAGCAAA < 41bp 1 0.732034490066219 1 0.983235239982605 experiment 0.535931019867562 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control EIF3I ENSG00000084623 UTR3 Human protein_coding chr1:32697062 chr1:32697049 . . 0 8 hm1A_associated_SNPs_203 0 0 1 6 32697039 32697060 mRNA hsa-miR-130a EIF3I miRanda miRanda
2192 chr1 32697049 32697049 1 + G A rs189268974 32697062 + 32697042 32697082 41 AGATCACGTCATTGCACTCCATCCTGAGCCACAAGAGCAAA AGATCACATCATTGCACTCCATCCTGAGCCACAAGAGCAAA < 41bp 1 0.732034490066219 1 0.983235239982605 experiment 0.535931019867562 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control EIF3I ENSG00000084623 UTR3 Human protein_coding chr1:32697062 chr1:32697049 . . 0 8 hm1A_associated_SNPs_203 0 0 1 6 32697038 32697060 mRNA hsa-miR-301a EIF3I miRanda miRanda
2192 chr1 32697049 32697049 1 + G A rs189268974 32697062 + 32697042 32697082 41 AGATCACGTCATTGCACTCCATCCTGAGCCACAAGAGCAAA AGATCACATCATTGCACTCCATCCTGAGCCACAAGAGCAAA < 41bp 1 0.732034490066219 1 0.983235239982605 experiment 0.535931019867562 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control EIF3I ENSG00000084623 UTR3 Human protein_coding chr1:32697062 chr1:32697049 . . 0 8 hm1A_associated_SNPs_203 0 0 1 6 32697039 32697060 mRNA hsa-miR-130b EIF3I miRanda miRanda
2192 chr1 32697049 32697049 1 + G A rs189268974 32697062 + 32697042 32697082 41 AGATCACGTCATTGCACTCCATCCTGAGCCACAAGAGCAAA AGATCACATCATTGCACTCCATCCTGAGCCACAAGAGCAAA < 41bp 1 0.732034490066219 1 0.983235239982605 experiment 0.535931019867562 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control EIF3I ENSG00000084623 UTR3 Human protein_coding chr1:32697062 chr1:32697049 . . 0 8 hm1A_associated_SNPs_203 0 0 1 6 32697036 32697060 mRNA hsa-miR-454 EIF3I miRanda miRanda
2192 chr1 32697049 32697049 1 + G A rs189268974 32697062 + 32697042 32697082 41 AGATCACGTCATTGCACTCCATCCTGAGCCACAAGAGCAAA AGATCACATCATTGCACTCCATCCTGAGCCACAAGAGCAAA < 41bp 1 0.732034490066219 1 0.983235239982605 experiment 0.535931019867562 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control EIF3I ENSG00000084623 UTR3 Human protein_coding chr1:32697062 chr1:32697049 . . 0 8 hm1A_associated_SNPs_203 0 0 1 6 32697038 32697060 mRNA hsa-miR-301b EIF3I miRanda miRanda
2192 chr1 32697063 32697063 1 + T C rs1137921 32697062 + 32697042 32697082 41 AGATCACGTCATTGCACTCCATCCTGAGCCACAAGAGCAAA AGATCACGTCATTGCACTCCACCCTGAGCCACAAGAGCAAA < 41bp 1 0.469907616864236 1 0.074979841709137 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control EIF3I ENSG00000084623 UTR3 Human protein_coding chr1:32697062 chr1:32697063 . . 0 22 hm1A_associated_SNPs_204 0 0 1 1 32697051 32697072 mRNA hsa-miR-24 EIF3I miRanda miRanda
2192 chr1 32697071 32697071 1 + C A rs1137947 32697062 + 32697042 32697082 41 AGATCACGTCATTGCACTCCATCCTGAGCCACAAGAGCAAA AGATCACGTCATTGCACTCCATCCTGAGCAACAAGAGCAAA < 41bp 1 0.738721783673877 1 0.962738752365112 experiment 0.522556432652245 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control EIF3I ENSG00000084623 UTR3 Human protein_coding chr1:32697062 chr1:32697071 . . 0 30 hm1A_associated_SNPs_205 0 0 1 1 32697051 32697072 mRNA hsa-miR-24 EIF3I miRanda miRanda
2192 chr1 45116562 45116562 1 + G A rs555190507 45116550 + 45116530 45116570 41 TACTTGCACACAGGTTCCCCATGTACATACATGCACATACT TACTTGCACACAGGTTCCCCATGTACATACATACACATACT < 41bp 1 0.593918353147368 1 0.925263404846191 experiment 0.812163293705263 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control RNF220 ENSG00000187147 UTR3 Human protein_coding chr1:45116550 chr1:45116562 . . 0 33 hm1A_associated_SNPs_210 0 0 1 1 45116550 45116572 mRNA hsa-miR-496 RNF220 miRanda miRanda
2192 chr1 46782409 46782409 1 + G A rs12135218 46782420 + 46782400 46782440 41 ATGTAATTCGCAATGATTCCATCTAAATAAAAGTTCTATGA ATGTAATTCACAATGATTCCATCTAAATAAAAGTTCTATGA < 41bp 1 0.602744197004258 1 0.873163163661957 experiment 0.794511605991483 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control UQCRH ENSG00000173660 UTR3 Human protein_coding chr1:46782420 chr1:46782409 . . 0 10 hm1A_associated_SNPs_213 0 0 1 1 46782395 46782414 mRNA hsa-miR-450a UQCRH miRanda miRanda
2192 chr1 150280759 150280759 1 + A G rs587638233 150280749 + 150280729 150280769 41 CAATCCCATTTCCTATTACCATTCTCTGCAATAAACTCAAA CAATCCCATTTCCTATTACCATTCTCTGCAGTAAACTCAAA < 41bp 1 0.735221167199501 1 0.991573393344879 experiment 0.529557665600999 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control MRPS21 ENSG00000187145 UTR3 Human other chr1:150280749 chr1:150280759 . . 0 31 hm1A_associated_SNPs_230 0 0 1 6 150280740 150280761 mRNA hsa-miR-25 MRPS21 miRanda miRanda
2192 chr1 150280759 150280759 1 + A G rs587638233 150280749 + 150280729 150280769 41 CAATCCCATTTCCTATTACCATTCTCTGCAATAAACTCAAA CAATCCCATTTCCTATTACCATTCTCTGCAGTAAACTCAAA < 41bp 1 0.735221167199501 1 0.991573393344879 experiment 0.529557665600999 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control MRPS21 ENSG00000187145 UTR3 Human other chr1:150280749 chr1:150280759 . . 0 31 hm1A_associated_SNPs_230 0 0 1 6 150280740 150280761 mRNA hsa-miR-32 MRPS21 miRanda miRanda
2192 chr1 150280759 150280759 1 + A G rs587638233 150280749 + 150280729 150280769 41 CAATCCCATTTCCTATTACCATTCTCTGCAATAAACTCAAA CAATCCCATTTCCTATTACCATTCTCTGCAGTAAACTCAAA < 41bp 1 0.735221167199501 1 0.991573393344879 experiment 0.529557665600999 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control MRPS21 ENSG00000187145 UTR3 Human other chr1:150280749 chr1:150280759 . . 0 31 hm1A_associated_SNPs_230 0 0 1 6 150280740 150280761 mRNA hsa-miR-92a MRPS21 miRanda miRanda
2192 chr1 150280759 150280759 1 + A G rs587638233 150280749 + 150280729 150280769 41 CAATCCCATTTCCTATTACCATTCTCTGCAATAAACTCAAA CAATCCCATTTCCTATTACCATTCTCTGCAGTAAACTCAAA < 41bp 1 0.735221167199501 1 0.991573393344879 experiment 0.529557665600999 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control MRPS21 ENSG00000187145 UTR3 Human other chr1:150280749 chr1:150280759 . . 0 31 hm1A_associated_SNPs_230 0 0 1 6 150280740 150280761 mRNA hsa-miR-363 MRPS21 miRanda miRanda
2192 chr1 150280759 150280759 1 + A G rs587638233 150280749 + 150280729 150280769 41 CAATCCCATTTCCTATTACCATTCTCTGCAATAAACTCAAA CAATCCCATTTCCTATTACCATTCTCTGCAGTAAACTCAAA < 41bp 1 0.735221167199501 1 0.991573393344879 experiment 0.529557665600999 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control MRPS21 ENSG00000187145 UTR3 Human other chr1:150280749 chr1:150280759 . . 0 31 hm1A_associated_SNPs_230 0 0 1 6 150280744 150280761 mRNA hsa-miR-367 MRPS21 miRanda miRanda
2192 chr1 150280759 150280759 1 + A G rs587638233 150280749 + 150280729 150280769 41 CAATCCCATTTCCTATTACCATTCTCTGCAATAAACTCAAA CAATCCCATTTCCTATTACCATTCTCTGCAGTAAACTCAAA < 41bp 1 0.735221167199501 1 0.991573393344879 experiment 0.529557665600999 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control MRPS21 ENSG00000187145 UTR3 Human other chr1:150280749 chr1:150280759 . . 0 31 hm1A_associated_SNPs_230 0 0 1 6 150280740 150280761 mRNA hsa-miR-92b MRPS21 miRanda miRanda
2192 chr1 156209778 156209778 1 + G T rs151299271 156209788 + 156209768 156209808 41 CCAGCCCAGGGGCCTTTACCATGTTCTCTCCACATCCGTAA CCAGCCCAGGTGCCTTTACCATGTTCTCTCCACATCCGTAA < 41bp 1 0.787842250163051 1 0.95003879070282 experiment 0.424315499673897 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control PMF1 ENSG00000160783 UTR3 Human protein_coding chr1:156209788 chr1:156209778 . . 0 11 hm1A_associated_SNPs_238 0 0 1 1 156209773 156209799 mRNA hsa-miR-185 PMF1 miRanda miRanda
2192 chr1 166823428 166823428 1 + G A rs540308634 166823417 + 166823397 166823437 41 AAGAGTAGAAAATGGGTTCAACTCCTGTTTCGCTCCACCAA AAGAGTAGAAAATGGGTTCAACTCCTGTTTCACTCCACCAA < 41bp 1 0.346695038926395 1 0.978415846824646 experiment 1 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control POGK ENSG00000143157 UTR3 Human protein_coding chr1:166823417 chr1:166823428 . . 0 32 hm1A_associated_SNPs_239 0 0 1 1 166823422 166823443 mRNA hsa-miR-296-3p POGK miRanda miRanda
2192 chr1 225977039 225977039 1 + A G rs201568819 225977047 + 225977027 225977067 41 AGGAAGCCCGCAATGTTACCATGGAAACTGAGTGAATGGTT AGGAAGCCCGCAGTGTTACCATGGAAACTGAGTGAATGGTT < 41bp 1 0.735514075422781 1 0.970301151275635 experiment 0.528971849154438 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control SRP9 ENSG00000143742 CDS Human protein_coding chr1:225977047 chr1:225977039 nonsynonymous SNV 0.888 0 13 hm1A_associated_SNPs_252 0 0 0 1 225977023 225977044 mRNA hsa-miR-543 SRP9 miRanda miRanda
2192 chr3 49060703 49060703 1 + A G rs117051791 49060721 + 49060701 49060741 41 ATAATTTATACACTTCTCCCATTTTGTATCAGGTGTGTTGC ATGATTTATACACTTCTCCCATTTTGTATCAGGTGTGTTGC < 41bp 1 0.575602063205948 1 0.990320086479187 experiment 0.848795873588105 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control NDUFAF3 ENSG00000178057 UTR3 Human protein_coding chr3:49060721 chr3:49060703 . . 0 3 hm1A_associated_SNPs_323 0 0 1 1 49060684 49060707 mRNA hsa-miR-590-3p NDUFAF3 miRanda miRanda
2192 chr5 7870928 7870928 1 + A G rs114427781 7870908 + 7870888 7870928 41 CTGTTACATGCCTTGAAGTGATGAGGAGGTTTCTGTTACTA CTGTTACATGCCTTGAAGTGATGAGGAGGTTTCTGTTACTG < 41bp 1 0.606483778631771 1 0.115795761346817 experiment 0.787032442736457 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7870908 chr5:7870928 synonymous SNV . 0 41 hm1A_associated_SNPs_352 0 0 1 2 7870925 7870945 mRNA hsa-miR-370 MTRR miRanda miRanda
2192 chr5 7870928 7870928 1 + A G rs114427781 7870908 + 7870888 7870928 41 CTGTTACATGCCTTGAAGTGATGAGGAGGTTTCTGTTACTA CTGTTACATGCCTTGAAGTGATGAGGAGGTTTCTGTTACTG < 41bp 1 0.606483778631771 1 0.115795761346817 experiment 0.787032442736457 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7870908 chr5:7870928 synonymous SNV . 0 41 hm1A_associated_SNPs_352 0 0 1 2 7870909 7870930 mRNA hsa-miR-410 MTRR miRanda miRanda
2192 chr5 85915288 85915288 1 + G A rs142386563 85915305 + 85915285 85915325 41 AAGGATGTTTCAGTTCCTCCATTTAACAGGTAGTTAGTGGA AAGAATGTTTCAGTTCCTCCATTTAACAGGTAGTTAGTGGA < 41bp 1 0.721837813144538 1 0.734961867332458 experiment 0.556324373710924 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control COX7C ENSG00000127184 UTR3 Human protein_coding chr5:85915305 chr5:85915288 . . 0 4 hm1A_associated_SNPs_357 0 0 1 2 85915287 85915296 mRNA hsa-miR-494 COX7C miRanda miRanda
2192 chr5 85915288 85915288 1 + G A rs142386563 85915305 + 85915285 85915325 41 AAGGATGTTTCAGTTCCTCCATTTAACAGGTAGTTAGTGGA AAGAATGTTTCAGTTCCTCCATTTAACAGGTAGTTAGTGGA < 41bp 1 0.721837813144538 1 0.734961867332458 experiment 0.556324373710924 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control COX7C ENSG00000127184 UTR3 Human protein_coding chr5:85915305 chr5:85915288 . . 0 4 hm1A_associated_SNPs_357 0 0 1 2 85915287 85915304 mRNA hsa-miR-873 COX7C miRanda miRanda
2192 chr5 95188106 95188106 1 + G A rs147994931 95188120 + 95188100 95188140 41 CCCACCGGGAGGAACGAACAACTCCAGATGCGCCACCTTAA CCCACCAGGAGGAACGAACAACTCCAGATGCGCCACCTTAA < 41bp 1 0.566875693069216 1 0.13567516207695 experiment 0.866248613861567 Functional Loss 29107537;GSE102040;m1A-MAP;HEK293T;Control LINC01554 ENSG00000251409 ncRNA_intronic Human lincRNA chr5:95188120 chr5:95188106 . . 0 7 hm1A_associated_SNPs_360 0 0 0 1 95188101 95188121 mRNA hsa-miR-375 C5orf27 miRanda miRanda
2192 chr5 95188114 95188114 1 + C T rs113376411 95188120 + 95188100 95188140 41 CCCACCGGGAGGAACGAACAACTCCAGATGCGCCACCTTAA CCCACCGGGAGGAATGAACAACTCCAGATGCGCCACCTTAA < 41bp 1 0.524464778218909 1 0.113206088542938 experiment 0.951070443562182 Functional Loss 29107537;GSE102040;m1A-MAP;HEK293T;Control LINC01554 ENSG00000251409 ncRNA_intronic Human lincRNA chr5:95188120 chr5:95188114 . . 0 15 hm1A_associated_SNPs_361 0 0 0 1 95188101 95188121 mRNA hsa-miR-375 C5orf27 miRanda miRanda
2192 chr6 29913294 29913294 1 + G C rs200062476 29913295 + 29913275 29913315 41 GCCCTTCCCTTTGTGACTTGAAGAACCCTGACTTTGTTTCT GCCCTTCCCTTTGTGACTTCAAGAACCCTGACTTTGTTTCT < 41bp 1 0.423696471970755 1 0.0441122651100159 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HLA-A ENSG00000206503 UTR3 Human protein_coding chr6:29913295 chr6:29913294 . . 0 20 hm1A_associated_SNPs_416 0 0 1 1 29913274 29913294 mRNA hsa-miR-224 HLA-A miRanda miRanda
2192 chr6 31592972 31592972 1 + C T rs554299374 31592985 + 31592965 31593005 41 CTACTGTCACGATTCTCTCGAGAGGAATTTCCGACCCTGCA CTACTGTTACGATTCTCTCGAGAGGAATTTCCGACCCTGCA < 41bp 1 0.677076781036722 1 0.553555488586426 experiment 0.645846437926557 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31592985 chr6:31592972 nonsynonymous SNV 0.996 3 8 hm1A_associated_SNPs_423 0 0 1 1 31592950 31592975 mRNA hsa-miR-542-3p BAT2 miRanda miRanda
2192 chr6 34213497 34213497 1 + C T rs537322378 34213502 + 34213482 34213522 41 TTTGCTTCCGCCACTCAGCCATTTCCCCCTCCTCAGATGGG TTTGCTTCCGCCACTTAGCCATTTCCCCCTCCTCAGATGGG < 41bp 1 0.772603784967219 1 0.999612152576447 experiment 0.454792430065561 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control HMGA1 ENSG00000137309 UTR3 Human protein_coding chr6:34213502 chr6:34213497 . . 0 16 hm1A_associated_SNPs_431 0 0 1 1 34213479 34213501 mRNA hsa-miR-138 HMGA1 miRanda miRanda
2192 chr6 41755410 41755410 1 + C G rs9471653 41755419 + 41755399 41755439 41 CGGTTCCTCCACCGAGGCCCATGCGAAGCTTTCCACTATGG CGGTTCCTCCAGCGAGGCCCATGCGAAGCTTTCCACTATGG < 41bp 1 0.760812721408361 1 0.993373870849609 experiment 0.478374557183279 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control TOMM6 ENSG00000214736;ENSG00000124593 UTR5;UTR3 Human other chr6:41755419 chr6:41755410 . . 0 12 hm1A_associated_SNPs_434 0 0 1 1 41755388 41755411 mRNA hsa-miR-491-5p PRICKLE4 miRanda miRanda
2192 chr7 1580904 1580904 1 + T C rs116976138 1580892 + 1580872 1580912 41 TCTCAGCGGACACAGGCAGGAGCGCCCCATCATTTGACGGT TCTCAGCGGACACAGGCAGGAGCGCCCCATCACTTGACGGT < 41bp 1 0.211582362547327 1 0.16626763343811 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control MAFK ENSG00000256005 ncRNA_exonic Human other chr7:1580892 chr7:1580904 . . 0 33 hm1A_associated_SNPs_453 0 0 1 1 1580902 1580910 mRNA hsa-miR-144 MAFK miRanda miRanda
2192 chr7 73536625 73536625 1 + C G rs566093035 73536645 + 73536625 73536665 41 CGGGCGGGGGTGGGAGGGCCATTTTGTCACTTTGCCTCAGT GGGGCGGGGGTGGGAGGGCCATTTTGTCACTTTGCCTCAGT < 41bp 1 0.769477092625813 1 0.993917346000671 experiment 0.461045814748373 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control LIMK1 ENSG00000106683 UTR3 Human protein_coding chr7:73536645 chr7:73536625 . . 0 1 hm1A_associated_SNPs_470 0 0 0 1 73536625 73536646 mRNA hsa-miR-328 LIMK1 miRanda miRanda
2192 chr7 100861475 100861475 1 + C T rs10215517 100861484 + 100861464 100861504 41 TTGTGTTGTGCCAATGGTGGAGAAGAAAACTTCGGGTATGT TTGTGTTGTGCTAATGGTGGAGAAGAAAACTTCGGGTATGT < 41bp 1 0.503683560869783 1 0.198669463396072 experiment 0.992632878260434 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861484 chr7:100861475 . . 0 12 hm1A_associated_SNPs_476 0 0 1 4 100861456 100861479 mRNA hsa-miR-32 ZNHIT1 miRanda miRanda
2192 chr7 100861475 100861475 1 + C T rs10215517 100861484 + 100861464 100861504 41 TTGTGTTGTGCCAATGGTGGAGAAGAAAACTTCGGGTATGT TTGTGTTGTGCTAATGGTGGAGAAGAAAACTTCGGGTATGT < 41bp 1 0.503683560869783 1 0.198669463396072 experiment 0.992632878260434 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861484 chr7:100861475 . . 0 12 hm1A_associated_SNPs_476 0 0 1 4 100861457 100861478 mRNA hsa-miR-96 ZNHIT1 miRanda miRanda
2192 chr7 100861475 100861475 1 + C T rs10215517 100861484 + 100861464 100861504 41 TTGTGTTGTGCCAATGGTGGAGAAGAAAACTTCGGGTATGT TTGTGTTGTGCTAATGGTGGAGAAGAAAACTTCGGGTATGT < 41bp 1 0.503683560869783 1 0.198669463396072 experiment 0.992632878260434 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861484 chr7:100861475 . . 0 12 hm1A_associated_SNPs_476 0 0 1 4 100861459 100861479 mRNA hsa-miR-363 ZNHIT1 miRanda miRanda
2192 chr7 100861475 100861475 1 + C T rs10215517 100861484 + 100861464 100861504 41 TTGTGTTGTGCCAATGGTGGAGAAGAAAACTTCGGGTATGT TTGTGTTGTGCTAATGGTGGAGAAGAAAACTTCGGGTATGT < 41bp 1 0.503683560869783 1 0.198669463396072 experiment 0.992632878260434 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861484 chr7:100861475 . . 0 12 hm1A_associated_SNPs_476 0 0 1 4 100861457 100861478 mRNA hsa-miR-1271 ZNHIT1 miRanda miRanda
2192 chr7 100861476 100861476 1 + A G rs58033606 100861484 + 100861464 100861504 41 TTGTGTTGTGCCAATGGTGGAGAAGAAAACTTCGGGTATGT TTGTGTTGTGCCGATGGTGGAGAAGAAAACTTCGGGTATGT < 41bp 1 0.550940823229419 1 0.754423379898071 experiment 0.898118353541161 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861484 chr7:100861476 . . 0 13 hm1A_associated_SNPs_477 0 0 1 4 100861456 100861479 mRNA hsa-miR-32 ZNHIT1 miRanda miRanda
2192 chr7 100861476 100861476 1 + A G rs58033606 100861484 + 100861464 100861504 41 TTGTGTTGTGCCAATGGTGGAGAAGAAAACTTCGGGTATGT TTGTGTTGTGCCGATGGTGGAGAAGAAAACTTCGGGTATGT < 41bp 1 0.550940823229419 1 0.754423379898071 experiment 0.898118353541161 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861484 chr7:100861476 . . 0 13 hm1A_associated_SNPs_477 0 0 1 4 100861457 100861478 mRNA hsa-miR-96 ZNHIT1 miRanda miRanda
2192 chr7 100861476 100861476 1 + A G rs58033606 100861484 + 100861464 100861504 41 TTGTGTTGTGCCAATGGTGGAGAAGAAAACTTCGGGTATGT TTGTGTTGTGCCGATGGTGGAGAAGAAAACTTCGGGTATGT < 41bp 1 0.550940823229419 1 0.754423379898071 experiment 0.898118353541161 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861484 chr7:100861476 . . 0 13 hm1A_associated_SNPs_477 0 0 1 4 100861459 100861479 mRNA hsa-miR-363 ZNHIT1 miRanda miRanda
2192 chr7 100861476 100861476 1 + A G rs58033606 100861484 + 100861464 100861504 41 TTGTGTTGTGCCAATGGTGGAGAAGAAAACTTCGGGTATGT TTGTGTTGTGCCGATGGTGGAGAAGAAAACTTCGGGTATGT < 41bp 1 0.550940823229419 1 0.754423379898071 experiment 0.898118353541161 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861484 chr7:100861476 . . 0 13 hm1A_associated_SNPs_477 0 0 1 4 100861457 100861478 mRNA hsa-miR-1271 ZNHIT1 miRanda miRanda
2192 chr7 127732540 127732540 1 + T C rs529508736 127732550 + 127732530 127732570 41 GTGATTTTTCTGATACGTCCATTCTCAAATGCCAGTGTGTT GTGATTTTTCCGATACGTCCATTCTCAAATGCCAGTGTGTT < 41bp 1 0.668857843660808 1 0.947599589824677 experiment 0.662284312678384 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control SND1 ENSG00000197157 UTR3 Human protein_coding chr7:127732550 chr7:127732540 . . 0 11 hm1A_associated_SNPs_485 0 0 1 2 127732524 127732545 mRNA hsa-miR-361-5p SND1 miRanda miRanda
2192 chr7 127732540 127732540 1 + T C rs529508736 127732550 + 127732530 127732570 41 GTGATTTTTCTGATACGTCCATTCTCAAATGCCAGTGTGTT GTGATTTTTCCGATACGTCCATTCTCAAATGCCAGTGTGTT < 41bp 1 0.668857843660808 1 0.947599589824677 experiment 0.662284312678384 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control SND1 ENSG00000197157 UTR3 Human protein_coding chr7:127732550 chr7:127732540 . . 0 11 hm1A_associated_SNPs_485 0 0 1 2 127732526 127732545 mRNA hsa-miR-383 SND1 miRanda miRanda
2192 chr7 135359102 135359102 1 + A G rs11538324 135359120 + 135359100 135359140 41 CAACATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT CAGCATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT < 41bp 1 0.725527285912168 1 0.908611297607422 experiment 0.548945428175664 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control C7orf73 ENSG00000243317 UTR3 Human protein_coding chr7:135359120 chr7:135359102 . . 0 3 hm1A_associated_SNPs_492 0 0 1 11 135359093 135359115 mRNA hsa-let-7a PL-5283 miRanda miRanda
2192 chr7 135359102 135359102 1 + A G rs11538324 135359120 + 135359100 135359140 41 CAACATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT CAGCATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT < 41bp 1 0.725527285912168 1 0.908611297607422 experiment 0.548945428175664 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control C7orf73 ENSG00000243317 UTR3 Human protein_coding chr7:135359120 chr7:135359102 . . 0 3 hm1A_associated_SNPs_492 0 0 1 11 135359093 135359115 mRNA hsa-let-7b PL-5283 miRanda miRanda
2192 chr7 135359102 135359102 1 + A G rs11538324 135359120 + 135359100 135359140 41 CAACATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT CAGCATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT < 41bp 1 0.725527285912168 1 0.908611297607422 experiment 0.548945428175664 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control C7orf73 ENSG00000243317 UTR3 Human protein_coding chr7:135359120 chr7:135359102 . . 0 3 hm1A_associated_SNPs_492 0 0 1 11 135359093 135359115 mRNA hsa-let-7c PL-5283 miRanda miRanda
2192 chr7 135359102 135359102 1 + A G rs11538324 135359120 + 135359100 135359140 41 CAACATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT CAGCATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT < 41bp 1 0.725527285912168 1 0.908611297607422 experiment 0.548945428175664 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control C7orf73 ENSG00000243317 UTR3 Human protein_coding chr7:135359120 chr7:135359102 . . 0 3 hm1A_associated_SNPs_492 0 0 1 11 135359093 135359115 mRNA hsa-let-7d PL-5283 miRanda miRanda
2192 chr7 135359102 135359102 1 + A G rs11538324 135359120 + 135359100 135359140 41 CAACATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT CAGCATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT < 41bp 1 0.725527285912168 1 0.908611297607422 experiment 0.548945428175664 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control C7orf73 ENSG00000243317 UTR3 Human protein_coding chr7:135359120 chr7:135359102 . . 0 3 hm1A_associated_SNPs_492 0 0 1 11 135359093 135359115 mRNA hsa-let-7e PL-5283 miRanda miRanda
2192 chr7 135359102 135359102 1 + A G rs11538324 135359120 + 135359100 135359140 41 CAACATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT CAGCATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT < 41bp 1 0.725527285912168 1 0.908611297607422 experiment 0.548945428175664 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control C7orf73 ENSG00000243317 UTR3 Human protein_coding chr7:135359120 chr7:135359102 . . 0 3 hm1A_associated_SNPs_492 0 0 1 11 135359093 135359115 mRNA hsa-let-7f PL-5283 miRanda miRanda
2192 chr7 135359102 135359102 1 + A G rs11538324 135359120 + 135359100 135359140 41 CAACATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT CAGCATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT < 41bp 1 0.725527285912168 1 0.908611297607422 experiment 0.548945428175664 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control C7orf73 ENSG00000243317 UTR3 Human protein_coding chr7:135359120 chr7:135359102 . . 0 3 hm1A_associated_SNPs_492 0 0 1 11 135359093 135359115 mRNA hsa-miR-98 PL-5283 miRanda miRanda
2192 chr7 135359102 135359102 1 + A G rs11538324 135359120 + 135359100 135359140 41 CAACATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT CAGCATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT < 41bp 1 0.725527285912168 1 0.908611297607422 experiment 0.548945428175664 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control C7orf73 ENSG00000243317 UTR3 Human protein_coding chr7:135359120 chr7:135359102 . . 0 3 hm1A_associated_SNPs_492 0 0 1 11 135359093 135359115 mRNA hsa-let-7g PL-5283 miRanda miRanda
2192 chr7 135359102 135359102 1 + A G rs11538324 135359120 + 135359100 135359140 41 CAACATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT CAGCATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT < 41bp 1 0.725527285912168 1 0.908611297607422 experiment 0.548945428175664 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control C7orf73 ENSG00000243317 UTR3 Human protein_coding chr7:135359120 chr7:135359102 . . 0 3 hm1A_associated_SNPs_492 0 0 1 11 135359092 135359115 mRNA hsa-let-7i PL-5283 miRanda miRanda
2192 chr7 135359102 135359102 1 + A G rs11538324 135359120 + 135359100 135359140 41 CAACATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT CAGCATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT < 41bp 1 0.725527285912168 1 0.908611297607422 experiment 0.548945428175664 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control C7orf73 ENSG00000243317 UTR3 Human protein_coding chr7:135359120 chr7:135359102 . . 0 3 hm1A_associated_SNPs_492 0 0 1 11 135359088 135359110 mRNA hsa-miR-190 PL-5283 miRanda miRanda
2192 chr7 135359102 135359102 1 + A G rs11538324 135359120 + 135359100 135359140 41 CAACATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT CAGCATACTCACCTCTTCCCATAATCCCTTTCCAACTGCAT < 41bp 1 0.725527285912168 1 0.908611297607422 experiment 0.548945428175664 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control C7orf73 ENSG00000243317 UTR3 Human protein_coding chr7:135359120 chr7:135359102 . . 0 3 hm1A_associated_SNPs_492 0 0 1 11 135359088 135359110 mRNA hsa-miR-190b PL-5283 miRanda miRanda
2192 chr7 141450185 141450185 1 + G A rs76547615 141450177 + 141450157 141450197 41 AGGATGATTCTTCTTTGGCCATCATTTGGTACAGTCTCATT AGGATGATTCTTCTTTGGCCATCATTTGATACAGTCTCATT < 41bp 1 0.719612817900192 1 0.994436979293823 experiment 0.560774364199615 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control SSBP1 ENSG00000106028 splicing Human protein_coding chr7:141450177 chr7:141450185 . . 0 29 hm1A_associated_SNPs_493 0 0 1 1 141450169 141450192 mRNA hsa-miR-486-5p SSBP1 miRanda miRanda
2192 chr7 150070663 150070663 1 + T C rs1051764 150070660 + 150070640 150070680 41 CCTCTTCCTTCCCAAAGAGCAGATCCCAAGGCATTTACTCC CCTCTTCCTTCCCAAAGAGCAGACCCCAAGGCATTTACTCC < 41bp 1 0.107079403295564 1 0.137623578310013 experiment 1 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control REPIN1 ENSG00000214022 UTR3 Human protein_coding chr7:150070660 chr7:150070663 . . 0 24 hm1A_associated_SNPs_499 0 0 1 1 150070660 150070680 mRNA hsa-miR-539 REPIN1 miRanda miRanda
2192 chr8 145698909 145698909 1 + G C rs183946498 145698889 + 145698869 145698909 41 TCCCTAGCCTCTTTGGATCCATTGCCCCTGAGCTCCCAGAG TCCCTAGCCTCTTTGGATCCATTGCCCCTGAGCTCCCAGAC < 41bp 1 0.651368684859583 1 0.998008072376251 experiment 0.697262630280834 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control KIFC2 ENSG00000160973;ENSG00000167702 UTR3 Human other chr8:145698889 chr8:145698909 . . 0 41 hm1A_associated_SNPs_520 0 0 1 1 145698889 145698910 mRNA hsa-miR-330-5p KIFC2 miRanda miRanda
2192 chr9 80944594 80944594 1 + A C rs115361057 80944577 + 80944557 80944597 41 CAAGGTCTGTTTTTAATACCATATACTTTATATTTCTATAC CAAGGTCTGTTTTTAATACCATATACTTTATATTTCTCTAC < 41bp 1 0.36086838606251 1 0.841562867164612 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control PSAT1 ENSG00000135069 UTR3 Human protein_coding chr9:80944577 chr9:80944594 . . 0 38 hm1A_associated_SNPs_541 1 0 1 4 80944584 80944605 mRNA hsa-miR-340 PSAT1 miRanda miRanda
2192 chr9 80944594 80944594 1 + A C rs115361057 80944577 + 80944557 80944597 41 CAAGGTCTGTTTTTAATACCATATACTTTATATTTCTATAC CAAGGTCTGTTTTTAATACCATATACTTTATATTTCTCTAC < 41bp 1 0.36086838606251 1 0.841562867164612 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control PSAT1 ENSG00000135069 UTR3 Human protein_coding chr9:80944577 chr9:80944594 . . 0 38 hm1A_associated_SNPs_541 1 0 1 4 80944586 80944606 mRNA hsa-miR-410 PSAT1 miRanda miRanda
2192 chr9 80944594 80944594 1 + A C rs115361057 80944577 + 80944557 80944597 41 CAAGGTCTGTTTTTAATACCATATACTTTATATTTCTATAC CAAGGTCTGTTTTTAATACCATATACTTTATATTTCTCTAC < 41bp 1 0.36086838606251 1 0.841562867164612 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control PSAT1 ENSG00000135069 UTR3 Human protein_coding chr9:80944577 chr9:80944594 . . 0 38 hm1A_associated_SNPs_541 1 0 1 4 80944570 80944595 mRNA hsa-miR-539 PSAT1 miRanda miRanda
2192 chr9 80944594 80944594 1 + A C rs115361057 80944577 + 80944557 80944597 41 CAAGGTCTGTTTTTAATACCATATACTTTATATTTCTATAC CAAGGTCTGTTTTTAATACCATATACTTTATATTTCTCTAC < 41bp 1 0.36086838606251 1 0.841562867164612 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control PSAT1 ENSG00000135069 UTR3 Human protein_coding chr9:80944577 chr9:80944594 . . 0 38 hm1A_associated_SNPs_541 1 0 1 4 80944592 80944611 mRNA hsa-miR-539 PSAT1 miRanda miRanda
2192 chr10 12292348 12292348 1 + G T rs12590 12292344 + 12292324 12292364 41 GGAGGACGACTGATGAGCGTACTGGAACTGGAGAAGAGGAG GGAGGACGACTGATGAGCGTACTGTAACTGGAGAAGAGGAG < 41bp 1 0.589259487488713 1 0.874842286109924 experiment 0.821481025022574 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDC123 ENSG00000151465 UTR3 Human protein_coding chr10:12292344 chr10:12292348 . . 0 25 hm1A_associated_SNPs_584 0 0 1 1 12292337 12292356 mRNA hsa-miR-145 CDC123 miRanda miRanda
2192 chr10 12292350 12292350 1 + A G rs1131465 12292344 + 12292324 12292364 41 GGAGGACGACTGATGAGCGTACTGGAACTGGAGAAGAGGAG GGAGGACGACTGATGAGCGTACTGGAGCTGGAGAAGAGGAG < 41bp 1 0.636621330320143 1 0.79473078250885 experiment 0.726757339359714 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDC123 ENSG00000151465 UTR3 Human protein_coding chr10:12292344 chr10:12292350 . . 0 27 hm1A_associated_SNPs_585 0 0 1 1 12292337 12292356 mRNA hsa-miR-145 CDC123 miRanda miRanda
2192 chr10 17279325 17279325 1 + C T rs12667 17279327 + 17279307 17279347 41 CAAGAATAAAAAAGAAATCCATATCTTAAAGAAACAGCTTT CAAGAATAAAAAAGAAATTCATATCTTAAAGAAACAGCTTT < 41bp 1 0.634151776979321 1 0.083452433347702 experiment 0.731696446041357 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control VIM ENSG00000026025 UTR3 Human protein_coding chr10:17279327 chr10:17279325 . . 0 19 hm1A_associated_SNPs_586 0 0 1 5 17279308 17279329 mRNA hsa-miR-135a VIM miRanda miRanda
2192 chr10 17279325 17279325 1 + C T rs12667 17279327 + 17279307 17279347 41 CAAGAATAAAAAAGAAATCCATATCTTAAAGAAACAGCTTT CAAGAATAAAAAAGAAATTCATATCTTAAAGAAACAGCTTT < 41bp 1 0.634151776979321 1 0.083452433347702 experiment 0.731696446041357 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control VIM ENSG00000026025 UTR3 Human protein_coding chr10:17279327 chr10:17279325 . . 0 19 hm1A_associated_SNPs_586 0 0 1 5 17279310 17279332 mRNA hsa-miR-190 VIM miRanda miRanda
2192 chr10 17279325 17279325 1 + C T rs12667 17279327 + 17279307 17279347 41 CAAGAATAAAAAAGAAATCCATATCTTAAAGAAACAGCTTT CAAGAATAAAAAAGAAATTCATATCTTAAAGAAACAGCTTT < 41bp 1 0.634151776979321 1 0.083452433347702 experiment 0.731696446041357 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control VIM ENSG00000026025 UTR3 Human protein_coding chr10:17279327 chr10:17279325 . . 0 19 hm1A_associated_SNPs_586 0 0 1 5 17279308 17279329 mRNA hsa-miR-135b VIM miRanda miRanda
2192 chr10 17279325 17279325 1 + C T rs12667 17279327 + 17279307 17279347 41 CAAGAATAAAAAAGAAATCCATATCTTAAAGAAACAGCTTT CAAGAATAAAAAAGAAATTCATATCTTAAAGAAACAGCTTT < 41bp 1 0.634151776979321 1 0.083452433347702 experiment 0.731696446041357 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control VIM ENSG00000026025 UTR3 Human protein_coding chr10:17279327 chr10:17279325 . . 0 19 hm1A_associated_SNPs_586 0 0 1 5 17279306 17279327 mRNA hsa-miR-876-5p VIM miRanda miRanda
2192 chr10 17279325 17279325 1 + C T rs12667 17279327 + 17279307 17279347 41 CAAGAATAAAAAAGAAATCCATATCTTAAAGAAACAGCTTT CAAGAATAAAAAAGAAATTCATATCTTAAAGAAACAGCTTT < 41bp 1 0.634151776979321 1 0.083452433347702 experiment 0.731696446041357 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control VIM ENSG00000026025 UTR3 Human protein_coding chr10:17279327 chr10:17279325 . . 0 19 hm1A_associated_SNPs_586 0 0 1 5 17279312 17279332 mRNA hsa-miR-190b VIM miRanda miRanda
2192 chr11 58974706 58974706 1 + G A rs138629247 58974705 + 58974685 58974725 41 TTAGGCACTGGGGAGAGATCAGTTTCCCCACATCAGGGAGA TTAGGCACTGGGGAGAGATCAATTTCCCCACATCAGGGAGA < 41bp 1 0.114320043088342 1 0.336956918239594 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock DTX4 ENSG00000110042 UTR3 Human protein_coding chr11:58974705 chr11:58974706 . . 0 22 hm1A_associated_SNPs_631 0 0 0 1 58974695 58974716 mRNA hsa-miR-491-5p DTX4 miRanda miRanda
2192 chr11 58974716 58974716 1 + A G rs181983815 58974705 + 58974685 58974725 41 TTAGGCACTGGGGAGAGATCAGTTTCCCCACATCAGGGAGA TTAGGCACTGGGGAGAGATCAGTTTCCCCACGTCAGGGAGA < 41bp 1 0.117717359573891 1 0.485434293746948 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock DTX4 ENSG00000110042 UTR3 Human protein_coding chr11:58974705 chr11:58974716 . . 0 32 hm1A_associated_SNPs_632 0 0 0 1 58974695 58974716 mRNA hsa-miR-491-5p DTX4 miRanda miRanda
2192 chr11 60690115 60690115 1 + T C rs555677139 60690111 + 60690091 60690131 41 CCCTGTACTCCCACCAAACCATGGTCCTTTAAGGCACGCTC CCCTGTACTCCCACCAAACCATGGCCCTTTAAGGCACGCTC < 41bp 1 0.708638642609717 1 0.996782660484314 experiment 0.582722714780566 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control TMEM109 ENSG00000256196 ncRNA_intronic Human antisense chr11:60690111 chr11:60690115 . . 0 25 hm1A_associated_SNPs_633 0 0 1 1 60690111 60690131 mRNA hsa-miR-22 TMEM109 miRanda miRanda
2192 chr11 60690124 60690124 1 + G A rs77661705 60690111 + 60690091 60690131 41 CCCTGTACTCCCACCAAACCATGGTCCTTTAAGGCACGCTC CCCTGTACTCCCACCAAACCATGGTCCTTTAAGACACGCTC < 41bp 1 0.687744125093888 1 0.994975090026855 experiment 0.624511749812223 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control TMEM109 ENSG00000256196 ncRNA_intronic Human antisense chr11:60690111 chr11:60690124 . . 0 34 hm1A_associated_SNPs_634 0 0 1 1 60690111 60690131 mRNA hsa-miR-22 TMEM109 miRanda miRanda
2192 chr11 60690125 60690125 1 + C A rs1044765 60690111 + 60690091 60690131 41 CCCTGTACTCCCACCAAACCATGGTCCTTTAAGGCACGCTC CCCTGTACTCCCACCAAACCATGGTCCTTTAAGGAACGCTC < 41bp 1 0.658799292767151 1 0.986687898635864 experiment 0.682401414465698 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control TMEM109 ENSG00000256196 ncRNA_intronic Human antisense chr11:60690111 chr11:60690125 . . 0 35 hm1A_associated_SNPs_635 0 0 1 1 60690111 60690131 mRNA hsa-miR-22 TMEM109 miRanda miRanda
2192 chr11 62160065 62160065 1 + G A rs4519096 62160078 + 62160058 62160098 41 GAAAAGGGAAAAAAGAAAGAAAGCAGCAGCATGATCCTGAC GAAAAGGAAAAAAAGAAAGAAAGCAGCAGCATGATCCTGAC < 41bp 1 0.0868266989711964 1 0.206833124160767 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control ASRGL1 ENSG00000255126 ncRNA_intronic Human antisense chr11:62160078 chr11:62160065 . . 0 8 hm1A_associated_SNPs_636 0 0 0 2 62160047 62160067 mRNA hsa-miR-204 ASRGL1 miRanda miRanda
2192 chr11 62160065 62160065 1 + G A rs4519096 62160078 + 62160058 62160098 41 GAAAAGGGAAAAAAGAAAGAAAGCAGCAGCATGATCCTGAC GAAAAGGAAAAAAAGAAAGAAAGCAGCAGCATGATCCTGAC < 41bp 1 0.0868266989711964 1 0.206833124160767 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control ASRGL1 ENSG00000255126 ncRNA_intronic Human antisense chr11:62160078 chr11:62160065 . . 0 8 hm1A_associated_SNPs_636 0 0 0 2 62160047 62160067 mRNA hsa-miR-211 ASRGL1 miRanda miRanda
2192 chr11 64789370 64789370 1 + C A rs11540368 64789389 + 64789369 64789409 41 ACCTTCACCAAACACTACCCATGGGGGGTTGGGAGTCAGCC AACTTCACCAAACACTACCCATGGGGGGTTGGGAGTCAGCC < 41bp 1 0.666127470720379 1 0.99182915687561 experiment 0.667745058559243 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control ARL2-SNX15 ENSG00000213465 UTR3 Human protein_coding chr11:64789389 chr11:64789370 . . 0 2 hm1A_associated_SNPs_641 0 0 1 1 64789365 64789387 mRNA hsa-miR-142-3p ARL2 miRanda miRanda
2192 chr11 65197545 65197545 1 + G C rs116766427 65197535 + 65197515 65197555 41 AGGGCACTGGAGCTGGTTCGAATCCTGACTGGACTACTTGG AGGGCACTGGAGCTGGTTCGAATCCTGACTCGACTACTTGG < 41bp 1 0.415448388202801 1 0.997556447982788 experiment 1 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65197535 chr11:65197545 . . 0 31 hm1A_associated_SNPs_643 0 0 1 2 65197544 65197565 lncRNA hsa-miR-142-5p NEAT1 miRanda starBase2
2192 chr11 65197545 65197545 1 + G C rs116766427 65197535 + 65197515 65197555 41 AGGGCACTGGAGCTGGTTCGAATCCTGACTGGACTACTTGG AGGGCACTGGAGCTGGTTCGAATCCTGACTCGACTACTTGG < 41bp 1 0.415448388202801 1 0.997556447982788 experiment 1 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65197535 chr11:65197545 . . 0 31 hm1A_associated_SNPs_643 0 0 1 2 65197543 65197565 lncRNA hsa-miR-5590-3p NEAT1 miRanda starBase2
2192 chr11 65197555 65197555 1 + G C rs114711052 65197535 + 65197515 65197555 41 AGGGCACTGGAGCTGGTTCGAATCCTGACTGGACTACTTGG AGGGCACTGGAGCTGGTTCGAATCCTGACTGGACTACTTGC < 41bp 1 0.399599758297544 1 0.997215032577515 experiment 1 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65197535 chr11:65197555 . . 0 41 hm1A_associated_SNPs_644 0 0 1 2 65197544 65197565 lncRNA hsa-miR-142-5p NEAT1 miRanda starBase2
2192 chr11 65197555 65197555 1 + G C rs114711052 65197535 + 65197515 65197555 41 AGGGCACTGGAGCTGGTTCGAATCCTGACTGGACTACTTGG AGGGCACTGGAGCTGGTTCGAATCCTGACTGGACTACTTGC < 41bp 1 0.399599758297544 1 0.997215032577515 experiment 1 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65197535 chr11:65197555 . . 0 41 hm1A_associated_SNPs_644 0 0 1 2 65197543 65197565 lncRNA hsa-miR-5590-3p NEAT1 miRanda starBase2
2192 chr11 65273622 65273622 1 + G A rs576087101 65273630 + 65273610 65273650 41 GGTTTCCAGGACGGGGTTCAAATCCCTGCGGCGTCTTTGCT GGTTTCCAGGACAGGGTTCAAATCCCTGCGGCGTCTTTGCT < 41bp 1 0.651385499360665 1 0.880257070064545 experiment 0.69722900127867 Functional Loss 29072297;GSE97420;m1A-seq;HEK293T;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273630 chr11:65273622 . . 0 13 hm1A_associated_SNPs_656 0 0 1 1 65273604 65273625 lncRNA hsa-miR-1247-5p MALAT1 miRanda starBase2
2192 chr11 119207173 119207173 1 + G A rs115186441 119207164 + 119207144 119207184 41 CCCTGCCTGCCCACCCCTCCATGCTCCACGCAGGCACTCAC CCCTGCCTGCCCACCCCTCCATGCTCCACACAGGCACTCAC < 41bp 1 0.760457165619834 1 0.981690049171448 experiment 0.479085668760333 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control RNF26 ENSG00000245385 ncRNA_exonic Human antisense chr11:119207164 chr11:119207173 . . 0 30 hm1A_associated_SNPs_678 0 0 1 1 119207154 119207178 mRNA hsa-miR-370 RNF26 miRanda miRanda
2192 chr12 6979935 6979935 1 + C T rs540279409 6979927 + 6979907 6979947 41 CAGGAGTGCTGCCCTCTCCCATGGTGCCCGTGCCTCTGTGC CAGGAGTGCTGCCCTCTCCCATGGTGCCTGTGCCTCTGTGC < 41bp 1 0.759042525682147 1 0.96208381652832 experiment 0.481914948635705 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control TPI1 ENSG00000111669 UTR3 Human protein_coding chr12:6979927 chr12:6979935 . . 0 29 hm1A_associated_SNPs_696 0 0 1 1 6979933 6979955 mRNA hsa-miR-300 TPI1 miRanda miRanda
2192 chr12 32896365 32896365 1 + G C rs1059422 32896366 + 32896346 32896386 41 GAGAACTATGTAATACTGAGACTTTGTTGACTCAAAACTTG GAGAACTATGTAATACTGACACTTTGTTGACTCAAAACTTG < 41bp 1 0.204015785281976 1 0.111830800771713 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DNM1L ENSG00000087470 UTR3 Human protein_coding chr12:32896366 chr12:32896365 . . 0 20 hm1A_associated_SNPs_705 3 0 1 1 32896355 32896377 mRNA hsa-miR-505 DNM1L miRanda miRanda
2192 chr13 50656504 50656504 1 + G A rs41284818 50656498 + 50656478 50656518 41 GTCTACGTTGGAGGTAAACAAATACGGGTCCTGCTTAGGAG GTCTACGTTGGAGGTAAACAAATACGAGTCCTGCTTAGGAG < 41bp 1 0.32382738247597 1 0.200362980365753 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control DLEU1 ENSG00000231607 ncRNA_intronic Human antisense chr13:50656498 chr13:50656504 . . 0 27 hm1A_associated_SNPs_741 0 0 1 3 50656486 50656507 mRNA hsa-miR-99a DLEU1 miRanda miRanda
2192 chr13 50656504 50656504 1 + G A rs41284818 50656498 + 50656478 50656518 41 GTCTACGTTGGAGGTAAACAAATACGGGTCCTGCTTAGGAG GTCTACGTTGGAGGTAAACAAATACGAGTCCTGCTTAGGAG < 41bp 1 0.32382738247597 1 0.200362980365753 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control DLEU1 ENSG00000231607 ncRNA_intronic Human antisense chr13:50656498 chr13:50656504 . . 0 27 hm1A_associated_SNPs_741 0 0 1 3 50656486 50656507 mRNA hsa-miR-100 DLEU1 miRanda miRanda
2192 chr13 50656504 50656504 1 + G A rs41284818 50656498 + 50656478 50656518 41 GTCTACGTTGGAGGTAAACAAATACGGGTCCTGCTTAGGAG GTCTACGTTGGAGGTAAACAAATACGAGTCCTGCTTAGGAG < 41bp 1 0.32382738247597 1 0.200362980365753 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control DLEU1 ENSG00000231607 ncRNA_intronic Human antisense chr13:50656498 chr13:50656504 . . 0 27 hm1A_associated_SNPs_741 0 0 1 3 50656486 50656507 mRNA hsa-miR-99b DLEU1 miRanda miRanda
2192 chr13 53217743 53217743 1 + G T rs534919764 53217750 + 53217730 53217770 41 CTCATGTGTATGGGCAAAAAACTCGAGGACTGTATTTGTGA CTCATGTGTATGGTCAAAAAACTCGAGGACTGTATTTGTGA < 41bp 1 0.23860072568301 1 0.199874639511108 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HNRNPA1L2 ENSG00000139675 UTR3 Human protein_coding chr13:53217750 chr13:53217743 . . 0 14 hm1A_associated_SNPs_743 0 0 0 1 53217730 53217750 mRNA hsa-miR-129-5p HNRNPA1L2 miRanda miRanda
2192 chr13 53217743 53217743 1 + G T rs534919764 53217763 + 53217743 53217783 41 GCAAAAAACTCGAGGACTGTATTTGTGACTAATTGTATAAC TCAAAAAACTCGAGGACTGTATTTGTGACTAATTGTATAAC < 41bp 1 0.431369887730333 1 0.0975785255432129 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HNRNPA1L2 ENSG00000139675 UTR3 Human protein_coding chr13:53217763 chr13:53217743 . . 0 1 hm1A_associated_SNPs_744 0 0 0 1 53217730 53217750 mRNA hsa-miR-129-5p HNRNPA1L2 miRanda miRanda
2192 chr13 100038273 100038273 1 + G C rs184859853 100038271 + 100038251 100038291 41 GCGGGTGAAATGGGATGGAGAAGAACAACAGCAGGCTTCCT GCGGGTGAAATGGGATGGAGAACAACAACAGCAGGCTTCCT < 41bp 1 0.115960623138698 1 0.191598564386368 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBAC2 ENSG00000134882 UTR3 Human protein_coding chr13:100038271 chr13:100038273 . . 0 23 hm1A_associated_SNPs_750 0 0 1 1 100038265 100038286 mRNA hsa-miR-370 UBAC2 miRanda miRanda
2192 chr13 100038285 100038285 1 + G A rs75653253 100038271 + 100038251 100038291 41 GCGGGTGAAATGGGATGGAGAAGAACAACAGCAGGCTTCCT GCGGGTGAAATGGGATGGAGAAGAACAACAGCAGACTTCCT < 41bp 1 0.117021412377434 1 0.192069858312607 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBAC2 ENSG00000134882 UTR3 Human protein_coding chr13:100038271 chr13:100038285 . . 0 35 hm1A_associated_SNPs_751 0 0 1 1 100038265 100038286 mRNA hsa-miR-370 UBAC2 miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010075 + 45010055 45010095 41 CCAACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTC CCAACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTG < 41bp 1 0.315313459225659 1 0.215705394744873 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010075 chr15:45010095 . . 0 41 hm1A_associated_SNPs_786 0 0 1 5 45010081 45010103 mRNA hsa-miR-130a B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010075 + 45010055 45010095 41 CCAACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTC CCAACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTG < 41bp 1 0.315313459225659 1 0.215705394744873 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010075 chr15:45010095 . . 0 41 hm1A_associated_SNPs_786 0 0 1 5 45010082 45010103 mRNA hsa-miR-301a B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010075 + 45010055 45010095 41 CCAACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTC CCAACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTG < 41bp 1 0.315313459225659 1 0.215705394744873 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010075 chr15:45010095 . . 0 41 hm1A_associated_SNPs_786 0 0 1 5 45010081 45010103 mRNA hsa-miR-130b B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010075 + 45010055 45010095 41 CCAACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTC CCAACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTG < 41bp 1 0.315313459225659 1 0.215705394744873 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010075 chr15:45010095 . . 0 41 hm1A_associated_SNPs_786 0 0 1 5 45010083 45010103 mRNA hsa-miR-454 B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010075 + 45010055 45010095 41 CCAACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTC CCAACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTG < 41bp 1 0.315313459225659 1 0.215705394744873 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010075 chr15:45010095 . . 0 41 hm1A_associated_SNPs_786 0 0 1 5 45010082 45010103 mRNA hsa-miR-301b B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010077 + 45010057 45010097 41 AACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTCTT AACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTGTT < 41bp 1 0.564452918299247 1 0.71498715877533 experiment 0.871094163401506 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010077 chr15:45010095 . . 0 39 hm1A_associated_SNPs_787 0 0 1 5 45010081 45010103 mRNA hsa-miR-130a B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010077 + 45010057 45010097 41 AACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTCTT AACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTGTT < 41bp 1 0.564452918299247 1 0.71498715877533 experiment 0.871094163401506 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010077 chr15:45010095 . . 0 39 hm1A_associated_SNPs_787 0 0 1 5 45010082 45010103 mRNA hsa-miR-301a B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010077 + 45010057 45010097 41 AACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTCTT AACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTGTT < 41bp 1 0.564452918299247 1 0.71498715877533 experiment 0.871094163401506 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010077 chr15:45010095 . . 0 39 hm1A_associated_SNPs_787 0 0 1 5 45010081 45010103 mRNA hsa-miR-130b B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010077 + 45010057 45010097 41 AACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTCTT AACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTGTT < 41bp 1 0.564452918299247 1 0.71498715877533 experiment 0.871094163401506 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010077 chr15:45010095 . . 0 39 hm1A_associated_SNPs_787 0 0 1 5 45010083 45010103 mRNA hsa-miR-454 B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010077 + 45010057 45010097 41 AACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTCTT AACATCAACATCTTGGTCAGATTTGAACTCTTCAATCTGTT < 41bp 1 0.564452918299247 1 0.71498715877533 experiment 0.871094163401506 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010077 chr15:45010095 . . 0 39 hm1A_associated_SNPs_787 0 0 1 5 45010082 45010103 mRNA hsa-miR-301b B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010082 + 45010062 45010102 41 CAACATCTTGGTCAGATTTGAACTCTTCAATCTCTTGCACT CAACATCTTGGTCAGATTTGAACTCTTCAATCTGTTGCACT < 41bp 1 0.505633435943665 1 0.279136896133423 experiment 0.988733128112671 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010082 chr15:45010095 . . 0 34 hm1A_associated_SNPs_788 0 0 1 5 45010081 45010103 mRNA hsa-miR-130a B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010082 + 45010062 45010102 41 CAACATCTTGGTCAGATTTGAACTCTTCAATCTCTTGCACT CAACATCTTGGTCAGATTTGAACTCTTCAATCTGTTGCACT < 41bp 1 0.505633435943665 1 0.279136896133423 experiment 0.988733128112671 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010082 chr15:45010095 . . 0 34 hm1A_associated_SNPs_788 0 0 1 5 45010082 45010103 mRNA hsa-miR-301a B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010082 + 45010062 45010102 41 CAACATCTTGGTCAGATTTGAACTCTTCAATCTCTTGCACT CAACATCTTGGTCAGATTTGAACTCTTCAATCTGTTGCACT < 41bp 1 0.505633435943665 1 0.279136896133423 experiment 0.988733128112671 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010082 chr15:45010095 . . 0 34 hm1A_associated_SNPs_788 0 0 1 5 45010081 45010103 mRNA hsa-miR-130b B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010082 + 45010062 45010102 41 CAACATCTTGGTCAGATTTGAACTCTTCAATCTCTTGCACT CAACATCTTGGTCAGATTTGAACTCTTCAATCTGTTGCACT < 41bp 1 0.505633435943665 1 0.279136896133423 experiment 0.988733128112671 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010082 chr15:45010095 . . 0 34 hm1A_associated_SNPs_788 0 0 1 5 45010083 45010103 mRNA hsa-miR-454 B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010082 + 45010062 45010102 41 CAACATCTTGGTCAGATTTGAACTCTTCAATCTCTTGCACT CAACATCTTGGTCAGATTTGAACTCTTCAATCTGTTGCACT < 41bp 1 0.505633435943665 1 0.279136896133423 experiment 0.988733128112671 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010082 chr15:45010095 . . 0 34 hm1A_associated_SNPs_788 0 0 1 5 45010082 45010103 mRNA hsa-miR-301b B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010090 + 45010070 45010110 41 TGGTCAGATTTGAACTCTTCAATCTCTTGCACTCAAAGCTT TGGTCAGATTTGAACTCTTCAATCTGTTGCACTCAAAGCTT < 41bp 1 0.187631082415406 1 0.162884205579758 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010090 chr15:45010095 . . 0 26 hm1A_associated_SNPs_789 0 0 1 5 45010081 45010103 mRNA hsa-miR-130a B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010090 + 45010070 45010110 41 TGGTCAGATTTGAACTCTTCAATCTCTTGCACTCAAAGCTT TGGTCAGATTTGAACTCTTCAATCTGTTGCACTCAAAGCTT < 41bp 1 0.187631082415406 1 0.162884205579758 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010090 chr15:45010095 . . 0 26 hm1A_associated_SNPs_789 0 0 1 5 45010082 45010103 mRNA hsa-miR-301a B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010090 + 45010070 45010110 41 TGGTCAGATTTGAACTCTTCAATCTCTTGCACTCAAAGCTT TGGTCAGATTTGAACTCTTCAATCTGTTGCACTCAAAGCTT < 41bp 1 0.187631082415406 1 0.162884205579758 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010090 chr15:45010095 . . 0 26 hm1A_associated_SNPs_789 0 0 1 5 45010081 45010103 mRNA hsa-miR-130b B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010090 + 45010070 45010110 41 TGGTCAGATTTGAACTCTTCAATCTCTTGCACTCAAAGCTT TGGTCAGATTTGAACTCTTCAATCTGTTGCACTCAAAGCTT < 41bp 1 0.187631082415406 1 0.162884205579758 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010090 chr15:45010095 . . 0 26 hm1A_associated_SNPs_789 0 0 1 5 45010083 45010103 mRNA hsa-miR-454 B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010090 + 45010070 45010110 41 TGGTCAGATTTGAACTCTTCAATCTCTTGCACTCAAAGCTT TGGTCAGATTTGAACTCTTCAATCTGTTGCACTCAAAGCTT < 41bp 1 0.187631082415406 1 0.162884205579758 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010090 chr15:45010095 . . 0 26 hm1A_associated_SNPs_789 0 0 1 5 45010082 45010103 mRNA hsa-miR-301b B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010091 + 45010071 45010111 41 GGTCAGATTTGAACTCTTCAATCTCTTGCACTCAAAGCTTG GGTCAGATTTGAACTCTTCAATCTGTTGCACTCAAAGCTTG < 41bp 1 0.60305911652964 1 0.393045425415039 experiment 0.793881766940721 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010091 chr15:45010095 . . 0 25 hm1A_associated_SNPs_790 0 0 1 5 45010081 45010103 mRNA hsa-miR-130a B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010091 + 45010071 45010111 41 GGTCAGATTTGAACTCTTCAATCTCTTGCACTCAAAGCTTG GGTCAGATTTGAACTCTTCAATCTGTTGCACTCAAAGCTTG < 41bp 1 0.60305911652964 1 0.393045425415039 experiment 0.793881766940721 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010091 chr15:45010095 . . 0 25 hm1A_associated_SNPs_790 0 0 1 5 45010082 45010103 mRNA hsa-miR-301a B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010091 + 45010071 45010111 41 GGTCAGATTTGAACTCTTCAATCTCTTGCACTCAAAGCTTG GGTCAGATTTGAACTCTTCAATCTGTTGCACTCAAAGCTTG < 41bp 1 0.60305911652964 1 0.393045425415039 experiment 0.793881766940721 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010091 chr15:45010095 . . 0 25 hm1A_associated_SNPs_790 0 0 1 5 45010081 45010103 mRNA hsa-miR-130b B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010091 + 45010071 45010111 41 GGTCAGATTTGAACTCTTCAATCTCTTGCACTCAAAGCTTG GGTCAGATTTGAACTCTTCAATCTGTTGCACTCAAAGCTTG < 41bp 1 0.60305911652964 1 0.393045425415039 experiment 0.793881766940721 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010091 chr15:45010095 . . 0 25 hm1A_associated_SNPs_790 0 0 1 5 45010083 45010103 mRNA hsa-miR-454 B2M miRanda miRanda
2192 chr15 45010095 45010095 1 + C G rs368409484 45010091 + 45010071 45010111 41 GGTCAGATTTGAACTCTTCAATCTCTTGCACTCAAAGCTTG GGTCAGATTTGAACTCTTCAATCTGTTGCACTCAAAGCTTG < 41bp 1 0.60305911652964 1 0.393045425415039 experiment 0.793881766940721 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B2M ENSG00000166710 UTR3 Human protein_coding chr15:45010091 chr15:45010095 . . 0 25 hm1A_associated_SNPs_790 0 0 1 5 45010082 45010103 mRNA hsa-miR-301b B2M miRanda miRanda
2192 chr16 2820882 2820882 1 + G A rs1050134 2820865 + 2820845 2820885 41 ATCTTCTCTTGCAGGTCTCCATAAATTGTCTTTGGGGGATT ATCTTCTCTTGCAGGTCTCCATAAATTGTCTTTGGGGAATT < 41bp 1 0.423618843866225 1 0.98995703458786 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control SRRM2 ENSG00000167978 UTR3 Human protein_coding chr16:2820865 chr16:2820882 . . 0 38 hm1A_associated_SNPs_830 0 0 1 1 2820871 2820893 mRNA hsa-miR-491-5p SRRM2 miRanda miRanda
2192 chr17 38613115 38613115 1 + T C rs10305311 38613133 + 38613113 38613153 41 CCTGGTGTGTTTCCAGATCGATCCTGGATTCACTCACTCAC CCCGGTGTGTTTCCAGATCGATCCTGGATTCACTCACTCAC < 41bp 1 0.608395643628241 1 0.89670991897583 experiment 0.783208712743519 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control IGFBP4 ENSG00000141753 UTR3 Human protein_coding chr17:38613133 chr17:38613115 . . 0 3 hm1A_associated_SNPs_898 0 0 1 2 38613102 38613123 mRNA hsa-miR-362-3p IGFBP4 miRanda miRanda
2192 chr17 38613115 38613115 1 + T C rs10305311 38613133 + 38613113 38613153 41 CCTGGTGTGTTTCCAGATCGATCCTGGATTCACTCACTCAC CCCGGTGTGTTTCCAGATCGATCCTGGATTCACTCACTCAC < 41bp 1 0.608395643628241 1 0.89670991897583 experiment 0.783208712743519 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control IGFBP4 ENSG00000141753 UTR3 Human protein_coding chr17:38613133 chr17:38613115 . . 0 3 hm1A_associated_SNPs_898 0 0 1 2 38613099 38613123 mRNA hsa-miR-329 IGFBP4 miRanda miRanda
2192 chr17 40931314 40931314 1 + T C rs61754310 40931327 + 40931307 40931347 41 CTCGCCCTACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC CTCGCCCCACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC < 41bp 1 0.796646827763159 1 0.998943686485291 experiment 0.406706344473682 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control VPS25 ENSG00000131475 UTR3 Human protein_coding chr17:40931327 chr17:40931314 . . 0 8 hm1A_associated_SNPs_900 0 0 1 9 40931299 40931320 mRNA hsa-let-7a VPS25 miRanda miRanda
2192 chr17 40931314 40931314 1 + T C rs61754310 40931327 + 40931307 40931347 41 CTCGCCCTACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC CTCGCCCCACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC < 41bp 1 0.796646827763159 1 0.998943686485291 experiment 0.406706344473682 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control VPS25 ENSG00000131475 UTR3 Human protein_coding chr17:40931327 chr17:40931314 . . 0 8 hm1A_associated_SNPs_900 0 0 1 9 40931299 40931320 mRNA hsa-let-7b VPS25 miRanda miRanda
2192 chr17 40931314 40931314 1 + T C rs61754310 40931327 + 40931307 40931347 41 CTCGCCCTACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC CTCGCCCCACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC < 41bp 1 0.796646827763159 1 0.998943686485291 experiment 0.406706344473682 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control VPS25 ENSG00000131475 UTR3 Human protein_coding chr17:40931327 chr17:40931314 . . 0 8 hm1A_associated_SNPs_900 0 0 1 9 40931301 40931320 mRNA hsa-let-7c VPS25 miRanda miRanda
2192 chr17 40931314 40931314 1 + T C rs61754310 40931327 + 40931307 40931347 41 CTCGCCCTACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC CTCGCCCCACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC < 41bp 1 0.796646827763159 1 0.998943686485291 experiment 0.406706344473682 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control VPS25 ENSG00000131475 UTR3 Human protein_coding chr17:40931327 chr17:40931314 . . 0 8 hm1A_associated_SNPs_900 0 0 1 9 40931299 40931320 mRNA hsa-let-7d VPS25 miRanda miRanda
2192 chr17 40931314 40931314 1 + T C rs61754310 40931327 + 40931307 40931347 41 CTCGCCCTACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC CTCGCCCCACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC < 41bp 1 0.796646827763159 1 0.998943686485291 experiment 0.406706344473682 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control VPS25 ENSG00000131475 UTR3 Human protein_coding chr17:40931327 chr17:40931314 . . 0 8 hm1A_associated_SNPs_900 0 0 1 9 40931299 40931320 mRNA hsa-let-7e VPS25 miRanda miRanda
2192 chr17 40931314 40931314 1 + T C rs61754310 40931327 + 40931307 40931347 41 CTCGCCCTACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC CTCGCCCCACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC < 41bp 1 0.796646827763159 1 0.998943686485291 experiment 0.406706344473682 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control VPS25 ENSG00000131475 UTR3 Human protein_coding chr17:40931327 chr17:40931314 . . 0 8 hm1A_associated_SNPs_900 0 0 1 9 40931299 40931320 mRNA hsa-let-7f VPS25 miRanda miRanda
2192 chr17 40931314 40931314 1 + T C rs61754310 40931327 + 40931307 40931347 41 CTCGCCCTACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC CTCGCCCCACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC < 41bp 1 0.796646827763159 1 0.998943686485291 experiment 0.406706344473682 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control VPS25 ENSG00000131475 UTR3 Human protein_coding chr17:40931327 chr17:40931314 . . 0 8 hm1A_associated_SNPs_900 0 0 1 9 40931299 40931320 mRNA hsa-miR-98 VPS25 miRanda miRanda
2192 chr17 40931314 40931314 1 + T C rs61754310 40931327 + 40931307 40931347 41 CTCGCCCTACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC CTCGCCCCACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC < 41bp 1 0.796646827763159 1 0.998943686485291 experiment 0.406706344473682 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control VPS25 ENSG00000131475 UTR3 Human protein_coding chr17:40931327 chr17:40931314 . . 0 8 hm1A_associated_SNPs_900 0 0 1 9 40931299 40931320 mRNA hsa-let-7g VPS25 miRanda miRanda
2192 chr17 40931314 40931314 1 + T C rs61754310 40931327 + 40931307 40931347 41 CTCGCCCTACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC CTCGCCCCACCTCCTTTCCCATCCTAGACTGTCCTTGAGCC < 41bp 1 0.796646827763159 1 0.998943686485291 experiment 0.406706344473682 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control VPS25 ENSG00000131475 UTR3 Human protein_coding chr17:40931327 chr17:40931314 . . 0 8 hm1A_associated_SNPs_900 0 0 1 9 40931299 40931320 mRNA hsa-let-7i VPS25 miRanda miRanda
2192 chr19 1272040 1272040 1 + T C rs12488 1272033 + 1272013 1272053 41 CTCGGGCGGGTCCTACAGAGACAGTTATGACAGTTACGGTA CTCGGGCGGGTCCTACAGAGACAGTTACGACAGTTACGGTA < 41bp 1 0.418959071631948 1 0.462592929601669 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272033 chr19:1272040 synonymous SNV . 0 28 hm1A_associated_SNPs_947 0 0 1 1 1272040 1272061 mRNA hsa-miR-218 CIRBP miRanda miRanda
2192 chr19 10800193 10800193 1 + A G rs188406525 10800210 + 10800190 10800230 41 TCAATGGTTTGTTAGTTGCCATTACAACTTTGTCTGGGTAG TCAGTGGTTTGTTAGTTGCCATTACAACTTTGTCTGGGTAG < 41bp 1 0.549377786563863 1 0.996632039546967 experiment 0.901244426872274 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control ILF3 ENSG00000129351 UTR3 Human protein_coding chr19:10800210 chr19:10800193 . . 0 4 hm1A_associated_SNPs_967 0 0 1 2 10800188 10800212 mRNA hsa-miR-183 ILF3 miRanda miRanda
2192 chr19 10800193 10800193 1 + A G rs188406525 10800210 + 10800190 10800230 41 TCAATGGTTTGTTAGTTGCCATTACAACTTTGTCTGGGTAG TCAGTGGTTTGTTAGTTGCCATTACAACTTTGTCTGGGTAG < 41bp 1 0.549377786563863 1 0.996632039546967 experiment 0.901244426872274 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control ILF3 ENSG00000129351 UTR3 Human protein_coding chr19:10800210 chr19:10800193 . . 0 4 hm1A_associated_SNPs_967 0 0 1 2 10800181 10800203 mRNA hsa-miR-495 ILF3 miRanda miRanda
2192 chr19 13055262 13055262 1 + G C rs557569683 13055256 + 13055236 13055276 41 CAGATTGGCTCACACTGAGAATGTAAGAACTACAAACAAAA CAGATTGGCTCACACTGAGAATGTAACAACTACAAACAAAA < 41bp 1 0.591171376524848 1 0.107301592826843 experiment 0.817657246950304 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CALR ENSG00000267458 ncRNA_exonic Human antisense chr19:13055256 chr19:13055262 . . 0 27 hm1A_associated_SNPs_968 0 0 1 3 13055254 13055275 mRNA hsa-miR-375 CALR miRanda miRanda
2192 chr19 13055262 13055262 1 + G C rs557569683 13055256 + 13055236 13055276 41 CAGATTGGCTCACACTGAGAATGTAAGAACTACAAACAAAA CAGATTGGCTCACACTGAGAATGTAACAACTACAAACAAAA < 41bp 1 0.591171376524848 1 0.107301592826843 experiment 0.817657246950304 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CALR ENSG00000267458 ncRNA_exonic Human antisense chr19:13055256 chr19:13055262 . . 0 27 hm1A_associated_SNPs_968 0 0 1 3 13055262 13055283 mRNA hsa-miR-539 CALR miRanda miRanda
2192 chr19 13055262 13055262 1 + G C rs557569683 13055256 + 13055236 13055276 41 CAGATTGGCTCACACTGAGAATGTAAGAACTACAAACAAAA CAGATTGGCTCACACTGAGAATGTAACAACTACAAACAAAA < 41bp 1 0.591171376524848 1 0.107301592826843 experiment 0.817657246950304 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CALR ENSG00000267458 ncRNA_exonic Human antisense chr19:13055256 chr19:13055262 . . 0 27 hm1A_associated_SNPs_968 0 0 1 3 13055259 13055279 mRNA hsa-miR-590-3p CALR miRanda miRanda
2192 chr19 13055262 13055262 1 + G C rs557569683 13055260 + 13055240 13055280 41 TTGGCTCACACTGAGAATGTAAGAACTACAAACAAAATTTC TTGGCTCACACTGAGAATGTAACAACTACAAACAAAATTTC < 41bp 1 0.362023570796457 1 0.0595821440219879 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CALR ENSG00000267458 ncRNA_exonic Human antisense chr19:13055260 chr19:13055262 . . 0 23 hm1A_associated_SNPs_969 0 0 1 3 13055254 13055275 mRNA hsa-miR-375 CALR miRanda miRanda
2192 chr19 13055262 13055262 1 + G C rs557569683 13055260 + 13055240 13055280 41 TTGGCTCACACTGAGAATGTAAGAACTACAAACAAAATTTC TTGGCTCACACTGAGAATGTAACAACTACAAACAAAATTTC < 41bp 1 0.362023570796457 1 0.0595821440219879 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CALR ENSG00000267458 ncRNA_exonic Human antisense chr19:13055260 chr19:13055262 . . 0 23 hm1A_associated_SNPs_969 0 0 1 3 13055262 13055283 mRNA hsa-miR-539 CALR miRanda miRanda
2192 chr19 13055262 13055262 1 + G C rs557569683 13055260 + 13055240 13055280 41 TTGGCTCACACTGAGAATGTAAGAACTACAAACAAAATTTC TTGGCTCACACTGAGAATGTAACAACTACAAACAAAATTTC < 41bp 1 0.362023570796457 1 0.0595821440219879 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CALR ENSG00000267458 ncRNA_exonic Human antisense chr19:13055260 chr19:13055262 . . 0 23 hm1A_associated_SNPs_969 0 0 1 3 13055259 13055279 mRNA hsa-miR-590-3p CALR miRanda miRanda
2192 chr19 13055262 13055262 1 + G C rs557569683 13055264 + 13055244 13055284 41 CTCACACTGAGAATGTAAGAACTACAAACAAAATTTCTATT CTCACACTGAGAATGTAACAACTACAAACAAAATTTCTATT < 41bp 1 0.643261131854177 1 0.0825609266757965 experiment 0.713477736291647 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CALR ENSG00000267458 ncRNA_exonic Human antisense chr19:13055264 chr19:13055262 . . 0 19 hm1A_associated_SNPs_970 0 0 1 3 13055254 13055275 mRNA hsa-miR-375 CALR miRanda miRanda
2192 chr19 13055262 13055262 1 + G C rs557569683 13055264 + 13055244 13055284 41 CTCACACTGAGAATGTAAGAACTACAAACAAAATTTCTATT CTCACACTGAGAATGTAACAACTACAAACAAAATTTCTATT < 41bp 1 0.643261131854177 1 0.0825609266757965 experiment 0.713477736291647 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CALR ENSG00000267458 ncRNA_exonic Human antisense chr19:13055264 chr19:13055262 . . 0 19 hm1A_associated_SNPs_970 0 0 1 3 13055262 13055283 mRNA hsa-miR-539 CALR miRanda miRanda
2192 chr19 13055262 13055262 1 + G C rs557569683 13055264 + 13055244 13055284 41 CTCACACTGAGAATGTAAGAACTACAAACAAAATTTCTATT CTCACACTGAGAATGTAACAACTACAAACAAAATTTCTATT < 41bp 1 0.643261131854177 1 0.0825609266757965 experiment 0.713477736291647 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CALR ENSG00000267458 ncRNA_exonic Human antisense chr19:13055264 chr19:13055262 . . 0 19 hm1A_associated_SNPs_970 0 0 1 3 13055259 13055279 mRNA hsa-miR-590-3p CALR miRanda miRanda
2192 chr19 13055262 13055262 1 + G C rs557569683 13055267 + 13055247 13055287 41 ACACTGAGAATGTAAGAACTACAAACAAAATTTCTATTAAA ACACTGAGAATGTAACAACTACAAACAAAATTTCTATTAAA < 41bp 1 0.629191565228813 1 0.0551905035972595 experiment 0.741616869542374 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CALR ENSG00000267458 ncRNA_exonic Human antisense chr19:13055267 chr19:13055262 . . 0 16 hm1A_associated_SNPs_971 0 0 1 3 13055254 13055275 mRNA hsa-miR-375 CALR miRanda miRanda
2192 chr19 13055262 13055262 1 + G C rs557569683 13055267 + 13055247 13055287 41 ACACTGAGAATGTAAGAACTACAAACAAAATTTCTATTAAA ACACTGAGAATGTAACAACTACAAACAAAATTTCTATTAAA < 41bp 1 0.629191565228813 1 0.0551905035972595 experiment 0.741616869542374 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CALR ENSG00000267458 ncRNA_exonic Human antisense chr19:13055267 chr19:13055262 . . 0 16 hm1A_associated_SNPs_971 0 0 1 3 13055262 13055283 mRNA hsa-miR-539 CALR miRanda miRanda
2192 chr19 13055262 13055262 1 + G C rs557569683 13055267 + 13055247 13055287 41 ACACTGAGAATGTAAGAACTACAAACAAAATTTCTATTAAA ACACTGAGAATGTAACAACTACAAACAAAATTTCTATTAAA < 41bp 1 0.629191565228813 1 0.0551905035972595 experiment 0.741616869542374 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CALR ENSG00000267458 ncRNA_exonic Human antisense chr19:13055267 chr19:13055262 . . 0 16 hm1A_associated_SNPs_971 0 0 1 3 13055259 13055279 mRNA hsa-miR-590-3p CALR miRanda miRanda
2192 chr19 13883883 13883883 1 + C T rs536993992 13883874 + 13883854 13883894 41 CACTCGTTACCCAGGCTGGAATGTAGAGGCGAGATCTCAGC CACTCGTTACCCAGGCTGGAATGTAGAGGTGAGATCTCAGC < 41bp 1 0.186976466222609 1 0.235311269760132 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MRI1 ENSG00000267633 ncRNA_intronic Human antisense chr19:13883874 chr19:13883883 . . 0 30 hm1A_associated_SNPs_975 0 0 1 1 13883878 13883900 mRNA hsa-miR-708 MRI1 miRanda miRanda
2192 chr19 13883883 13883883 1 + C T rs536993992 13883892 + 13883872 13883912 41 GAATGTAGAGGCGAGATCTCAGCTCACTGAAACCTGTGCCT GAATGTAGAGGTGAGATCTCAGCTCACTGAAACCTGTGCCT < 41bp 1 0.235181742042965 1 0.381475955247879 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MRI1 ENSG00000267633 ncRNA_intronic Human antisense chr19:13883892 chr19:13883883 . . 0 12 hm1A_associated_SNPs_976 0 0 1 1 13883878 13883900 mRNA hsa-miR-708 MRI1 miRanda miRanda
2192 chr19 13883883 13883883 1 + C T rs536993992 13883897 + 13883877 13883917 41 TAGAGGCGAGATCTCAGCTCACTGAAACCTGTGCCTCCCCG TAGAGGTGAGATCTCAGCTCACTGAAACCTGTGCCTCCCCG < 41bp 1 0.149639473333261 1 0.219102799892426 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MRI1 ENSG00000267633 ncRNA_intronic Human antisense chr19:13883897 chr19:13883883 . . 0 7 hm1A_associated_SNPs_977 0 0 1 1 13883878 13883900 mRNA hsa-miR-708 MRI1 miRanda miRanda
2192 chr19 47112648 47112648 1 + T C rs10113 47112647 + 47112627 47112667 41 TGCCCTCGCCTCTTCCATCCATGTCTTCCAAGGCCTGATGC TGCCCTCGCCTCTTCCATCCACGTCTTCCAAGGCCTGATGC < 41bp 1 0.59022559299441 1 0.981341361999512 experiment 0.81954881401118 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control CALM3 ENSG00000269292 ncRNA_intronic Human antisense chr19:47112647 chr19:47112648 . . 0 22 hm1A_associated_SNPs_1000 0 0 1 1 47112635 47112656 mRNA hsa-miR-7 CALM3 miRanda miRanda
2192 chr19 47112740 47112740 1 + C T rs710889 47112742 + 47112722 47112762 41 AGCCCGGATGGCTCTCCTCCATTTTGGTTTGTTTCCTCTTG AGCCCGGATGGCTCTCCTTCATTTTGGTTTGTTTCCTCTTG < 41bp 1 0.723361230160327 1 0.146121174097061 experiment 0.553277539679345 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control CALM3 ENSG00000269292 ncRNA_intronic Human antisense chr19:47112742 chr19:47112740 . . 0 19 hm1A_associated_SNPs_1001 0 0 1 1 47112733 47112755 mRNA hsa-miR-495 CALM3 miRanda miRanda
2192 chr19 48700661 48700661 1 + T C rs561678748 48700659 + 48700639 48700679 41 GATGTAGGAGGGGGAAGAAAAATCGGAGATGAGACAAAAGA GATGTAGGAGGGGGAAGAAAAACCGGAGATGAGACAAAAGA < 41bp 1 0.33512866409883 1 0.958276748657227 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock C19orf68 ENSG00000185453 UTR3 Human protein_coding chr19:48700659 chr19:48700661 . . 0 23 hm1A_associated_SNPs_1006 0 0 1 1 48700644 48700667 mRNA hsa-miR-136 C19orf68 miRanda miRanda
2192 chr19 49995254 49995254 1 + A G rs701717 49995234 + 49995214 49995254 41 TCTTAGTCACTGCCTCCCGAAGTTGCTTGAAAGCACTCGGA TCTTAGTCACTGCCTCCCGAAGTTGCTTGAAAGCACTCGGG < 41bp 1 0.142391925538936 1 0.0295524299144745 experiment 1 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995234 chr19:49995254 . . 0 41 hm1A_associated_SNPs_1010 0 0 1 1 49995251 49995273 mRNA hsa-miR-425 RPL13A miRanda miRanda
2192 chr19 50189442 50189442 1 + G C rs142242594 50189456 + 50189436 50189476 41 CGCCCTGGTGGCCTACTTCAACATCGAGTTCACACGCTGCC CGCCCTCGTGGCCTACTTCAACATCGAGTTCACACGCTGCC < 41bp 1 0.71711899331722 1 0.509973406791687 experiment 0.565762013365559 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50189456 chr19:50189442 synonymous SNV . 0 7 hm1A_associated_SNPs_1013 0 0 1 1 50189438 50189459 mRNA hsa-miR-653 PRMT1 miRanda miRanda
2192 chr19 50436912 50436912 1 + A G rs561412869 50436900 + 50436880 50436920 41 GTAAGTCAGGGCGGGCTTTGAGAAGGGGACCCATATCCTAC GTAAGTCAGGGCGGGCTTTGAGAAGGGGACCCGTATCCTAC < 41bp 1 0.15474342881969 1 0.844184041023254 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control ATF5 ENSG00000169136 UTR3 Human protein_coding chr19:50436900 chr19:50436912 . . 0 33 hm1A_associated_SNPs_1014 0 0 1 1 50436911 50436930 mRNA hsa-miR-129-5p ATF5 miRanda miRanda
2192 chr19 50436952 50436952 1 + A G rs529007673 50436969 + 50436949 50436989 41 GACACTACGCTAAGGGAGGGAGGCTAAAGGCGGCCAGGTTT GACGCTACGCTAAGGGAGGGAGGCTAAAGGCGGCCAGGTTT < 41bp 1 0.232057826241752 1 0.21582967042923 experiment 1 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control ATF5 ENSG00000169136 UTR3 Human protein_coding chr19:50436969 chr19:50436952 . . 0 4 hm1A_associated_SNPs_1015 0 0 1 1 50436938 50436960 mRNA hsa-miR-196b ATF5 miRanda miRanda
2192 chr19 50436980 50436980 1 + G A rs8647 50436969 + 50436949 50436989 41 GACACTACGCTAAGGGAGGGAGGCTAAAGGCGGCCAGGTTT GACACTACGCTAAGGGAGGGAGGCTAAAGGCAGCCAGGTTT < 41bp 1 0.219164547902052 1 0.186137855052948 experiment 1 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control ATF5 ENSG00000169136 UTR3 Human protein_coding chr19:50436969 chr19:50436980 . . 0 32 hm1A_associated_SNPs_1016 0 0 1 1 50436968 50436989 mRNA hsa-miR-490-3p ATF5 miRanda miRanda
2192 chr20 3028762 3028762 1 + A C rs180740190 3028751 + 3028731 3028771 41 GAGACCCTAGAGTGGTTTCCATCTCACAGAGAATCAGACAG GAGACCCTAGAGTGGTTTCCATCTCACAGAGCATCAGACAG < 41bp 1 0.788185266162274 1 0.994183897972107 experiment 0.423629467675453 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control MRPS26 ENSG00000125901 UTR3 Human protein_coding chr20:3028751 chr20:3028762 . . 0 32 hm1A_associated_SNPs_1027 0 0 1 2 3028756 3028777 mRNA hsa-miR-328 MRPS26 miRanda miRanda
2192 chr20 3028762 3028762 1 + A C rs180740190 3028751 + 3028731 3028771 41 GAGACCCTAGAGTGGTTTCCATCTCACAGAGAATCAGACAG GAGACCCTAGAGTGGTTTCCATCTCACAGAGCATCAGACAG < 41bp 1 0.788185266162274 1 0.994183897972107 experiment 0.423629467675453 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control MRPS26 ENSG00000125901 UTR3 Human protein_coding chr20:3028751 chr20:3028762 . . 0 32 hm1A_associated_SNPs_1027 0 0 1 2 3028752 3028774 mRNA hsa-miR-339-5p MRPS26 miRanda miRanda
2192 chr20 57485117 57485117 1 + C A rs75561530 57485098 + 57485078 57485118 41 GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCTCGCT GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCTCGAT < 41bp 1 0.307975914195155 1 0.216629028320312 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485098 chr20:57485117 synonymous SNV . 0 40 hm1A_associated_SNPs_1050 0 0 1 4 57485097 57485119 mRNA hsa-miR-15a GNAS miRanda miRanda
2192 chr20 57485117 57485117 1 + C A rs75561530 57485098 + 57485078 57485118 41 GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCTCGCT GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCTCGAT < 41bp 1 0.307975914195155 1 0.216629028320312 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485098 chr20:57485117 synonymous SNV . 0 40 hm1A_associated_SNPs_1050 0 0 1 4 57485097 57485119 mRNA hsa-miR-15b GNAS miRanda miRanda
2192 chr20 57485117 57485117 1 + C A rs75561530 57485098 + 57485078 57485118 41 GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCTCGCT GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCTCGAT < 41bp 1 0.307975914195155 1 0.216629028320312 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485098 chr20:57485117 synonymous SNV . 0 40 hm1A_associated_SNPs_1050 0 0 1 4 57485104 57485126 mRNA hsa-miR-142-3p GNAS miRanda miRanda
2192 chr20 57485117 57485117 1 + C A rs75561530 57485098 + 57485078 57485118 41 GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCTCGCT GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCTCGAT < 41bp 1 0.307975914195155 1 0.216629028320312 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485098 chr20:57485117 synonymous SNV . 0 40 hm1A_associated_SNPs_1050 0 0 1 4 57485098 57485119 mRNA hsa-miR-497 GNAS miRanda miRanda
2192 chr20 57485812 57485812 1 + C T rs8386 57485804 + 57485784 57485824 41 ATTTCACCTGCGCTGTGGACACTGAGAACATCCGCCGTGTG ATTTCACCTGCGCTGTGGACACTGAGAATATCCGCCGTGTG < 41bp 1 0.366728921393766 1 0.551784038543701 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485804 chr20:57485812 synonymous SNV . 0 29 hm1A_associated_SNPs_1051 0 0 1 1 57485796 57485817 mRNA hsa-miR-876-5p GNAS miRanda miRanda
2192 chr20 60963542 60963542 1 + T G rs114402901 60963522 + 60963502 60963542 41 CCTGGTTCTAGGAACTTTTGACTGGAGAGAATCACAGATGT CCTGGTTCTAGGAACTTTTGACTGGAGAGAATCACAGATGG < 41bp 1 0.398980627101514 1 0.250406742095947 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963522 chr20:60963542 . . 0 41 hm1A_associated_SNPs_1053 0 0 1 2 60963535 60963557 mRNA hsa-miR-425 RPS21 miRanda miRanda
2192 chr20 60963542 60963542 1 + T G rs114402901 60963522 + 60963502 60963542 41 CCTGGTTCTAGGAACTTTTGACTGGAGAGAATCACAGATGT CCTGGTTCTAGGAACTTTTGACTGGAGAGAATCACAGATGG < 41bp 1 0.398980627101514 1 0.250406742095947 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963522 chr20:60963542 . . 0 41 hm1A_associated_SNPs_1053 0 0 1 2 60963536 60963559 mRNA hsa-miR-758 RPS21 miRanda miRanda
2192 chr20 60963542 60963542 1 + T G rs114402901 60963527 + 60963507 60963547 41 TTCTAGGAACTTTTGACTGGAGAGAATCACAGATGTGGAAT TTCTAGGAACTTTTGACTGGAGAGAATCACAGATGGGGAAT < 41bp 1 0.39032278446271 1 0.876273095607758 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963527 chr20:60963542 . . 0 36 hm1A_associated_SNPs_1054 0 0 1 2 60963535 60963557 mRNA hsa-miR-425 RPS21 miRanda miRanda
2192 chr20 60963542 60963542 1 + T G rs114402901 60963527 + 60963507 60963547 41 TTCTAGGAACTTTTGACTGGAGAGAATCACAGATGTGGAAT TTCTAGGAACTTTTGACTGGAGAGAATCACAGATGGGGAAT < 41bp 1 0.39032278446271 1 0.876273095607758 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963527 chr20:60963542 . . 0 36 hm1A_associated_SNPs_1054 0 0 1 2 60963536 60963559 mRNA hsa-miR-758 RPS21 miRanda miRanda
2192 chr20 60963542 60963542 1 + T G rs114402901 60963529 + 60963509 60963549 41 CTAGGAACTTTTGACTGGAGAGAATCACAGATGTGGAATAT CTAGGAACTTTTGACTGGAGAGAATCACAGATGGGGAATAT < 41bp 1 0.306187226578508 1 0.969066500663757 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963529 chr20:60963542 . . 0 34 hm1A_associated_SNPs_1055 0 0 1 2 60963535 60963557 mRNA hsa-miR-425 RPS21 miRanda miRanda
2192 chr20 60963542 60963542 1 + T G rs114402901 60963529 + 60963509 60963549 41 CTAGGAACTTTTGACTGGAGAGAATCACAGATGTGGAATAT CTAGGAACTTTTGACTGGAGAGAATCACAGATGGGGAATAT < 41bp 1 0.306187226578508 1 0.969066500663757 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963529 chr20:60963542 . . 0 34 hm1A_associated_SNPs_1055 0 0 1 2 60963536 60963559 mRNA hsa-miR-758 RPS21 miRanda miRanda
2192 chr20 60963542 60963542 1 + T G rs114402901 60963531 + 60963511 60963551 41 AGGAACTTTTGACTGGAGAGAATCACAGATGTGGAATATTT AGGAACTTTTGACTGGAGAGAATCACAGATGGGGAATATTT < 41bp 1 0.457713801068682 1 0.222631841897964 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963531 chr20:60963542 . . 0 32 hm1A_associated_SNPs_1056 0 0 1 2 60963535 60963557 mRNA hsa-miR-425 RPS21 miRanda miRanda
2192 chr20 60963542 60963542 1 + T G rs114402901 60963531 + 60963511 60963551 41 AGGAACTTTTGACTGGAGAGAATCACAGATGTGGAATATTT AGGAACTTTTGACTGGAGAGAATCACAGATGGGGAATATTT < 41bp 1 0.457713801068682 1 0.222631841897964 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963531 chr20:60963542 . . 0 32 hm1A_associated_SNPs_1056 0 0 1 2 60963536 60963559 mRNA hsa-miR-758 RPS21 miRanda miRanda
2192 chr20 60963542 60963542 1 + T G rs114402901 60963535 + 60963515 60963555 41 ACTTTTGACTGGAGAGAATCACAGATGTGGAATATTTGTCA ACTTTTGACTGGAGAGAATCACAGATGGGGAATATTTGTCA < 41bp 1 0.521928521774933 1 0.0836142897605896 experiment 0.956142956450133 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963535 chr20:60963542 . . 0 28 hm1A_associated_SNPs_1057 0 0 1 2 60963535 60963557 mRNA hsa-miR-425 RPS21 miRanda miRanda
2192 chr20 60963542 60963542 1 + T G rs114402901 60963535 + 60963515 60963555 41 ACTTTTGACTGGAGAGAATCACAGATGTGGAATATTTGTCA ACTTTTGACTGGAGAGAATCACAGATGGGGAATATTTGTCA < 41bp 1 0.521928521774933 1 0.0836142897605896 experiment 0.956142956450133 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963535 chr20:60963542 . . 0 28 hm1A_associated_SNPs_1057 0 0 1 2 60963536 60963559 mRNA hsa-miR-758 RPS21 miRanda miRanda
2192 chr20 60963542 60963542 1 + T G rs114402901 60963539 + 60963519 60963559 41 TTGACTGGAGAGAATCACAGATGTGGAATATTTGTCATAAA TTGACTGGAGAGAATCACAGATGGGGAATATTTGTCATAAA < 41bp 1 0.478905958158041 1 0.0534634292125702 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963539 chr20:60963542 . . 0 24 hm1A_associated_SNPs_1058 0 0 1 2 60963535 60963557 mRNA hsa-miR-425 RPS21 miRanda miRanda
2192 chr20 60963542 60963542 1 + T G rs114402901 60963539 + 60963519 60963559 41 TTGACTGGAGAGAATCACAGATGTGGAATATTTGTCATAAA TTGACTGGAGAGAATCACAGATGGGGAATATTTGTCATAAA < 41bp 1 0.478905958158041 1 0.0534634292125702 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963539 chr20:60963542 . . 0 24 hm1A_associated_SNPs_1058 0 0 1 2 60963536 60963559 mRNA hsa-miR-758 RPS21 miRanda miRanda
2192 chr20 60963542 60963542 1 + T G rs114402901 60963545 + 60963525 60963565 41 GGAGAGAATCACAGATGTGGAATATTTGTCATAAATAAATA GGAGAGAATCACAGATGGGGAATATTTGTCATAAATAAATA < 41bp 1 0.341489429214765 1 0.054006427526474 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963545 chr20:60963542 . . 0 18 hm1A_associated_SNPs_1059 0 0 1 2 60963535 60963557 mRNA hsa-miR-425 RPS21 miRanda miRanda
2192 chr20 60963542 60963542 1 + T G rs114402901 60963545 + 60963525 60963565 41 GGAGAGAATCACAGATGTGGAATATTTGTCATAAATAAATA GGAGAGAATCACAGATGGGGAATATTTGTCATAAATAAATA < 41bp 1 0.341489429214765 1 0.054006427526474 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963545 chr20:60963542 . . 0 18 hm1A_associated_SNPs_1059 0 0 1 2 60963536 60963559 mRNA hsa-miR-758 RPS21 miRanda miRanda
2192 chr20 62560785 62560785 1 + C T rs201495666 62560793 + 62560773 62560813 41 AAGGAACATCTACGACAAGTACGGCTCGCTGGGTCTCTACG AAGGAACATCTATGACAAGTACGGCTCGCTGGGTCTCTACG < 41bp 1 0.486375568191721 1 0.231892734766006 experiment 1 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62560793 chr20:62560785 synonymous SNV . 0 13 hm1A_associated_SNPs_1076 2 0 1 1 62560765 62560786 mRNA hsa-miR-142-3p DNAJC5 miRanda miRanda
2192 chr22 29696305 29696305 1 + C G rs557978659 29696292 + 29696272 29696312 41 GTACTTTAGTATTTTTCACCATTTGTGAAGAAACATTAAAA GTACTTTAGTATTTTTCACCATTTGTGAAGAAAGATTAAAA < 41bp 1 0.735635026373912 1 0.88522481918335 experiment 0.528729947252176 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control EWSR1 ENSG00000182944 UTR3 Human protein_coding chr22:29696292 chr22:29696305 . . 0 34 hm1A_associated_SNPs_1103 0 0 1 1 29696303 29696328 mRNA hsa-miR-136 EWSR1 miRanda miRanda
2192 chr22 38202440 38202440 1 + T G rs138070396 38202439 + 38202419 38202459 41 GTTTTGTTGGCTTGTTTGCCATGAAGGTAGATGTGGGTGGG GTTTTGTTGGCTTGTTTGCCAGGAAGGTAGATGTGGGTGGG < 41bp 1 0.354757514298762 1 0.0775243937969208 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control H1F0 ENSG00000189060 UTR3 Human protein_coding chr22:38202439 chr22:38202440 . . 0 22 hm1A_associated_SNPs_1107 0 0 1 1 38202425 38202446 mRNA hsa-miR-205 H1F0 miRanda miRanda
2192 chr22 24236682 24236682 1 - C A ACC 24236701 - 24236681 24236721 41 GAGGAACCCGTCCGGCACGGAGGCGCGGGGCACGTTGGTGT GAGGAACCCGTCCGGCACGGAGGCGCGGGGCACGTTGGTTT < 41bp 1 0.578035555573661 1 0.511762380599976 experiment 0.843928888852678 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control MIF ENSG00000240972 CDS Human protein_coding chr22:24236701 chr22:24236682 nonsynonymous SNV 1.000 2 40 hm1A_associated_SNPs_1146 0 0 0 5 24236676 24236697 mRNA hsa-miR-30a LOC284889 miRanda miRanda
2192 chr22 24236682 24236682 1 - C A ACC 24236701 - 24236681 24236721 41 GAGGAACCCGTCCGGCACGGAGGCGCGGGGCACGTTGGTGT GAGGAACCCGTCCGGCACGGAGGCGCGGGGCACGTTGGTTT < 41bp 1 0.578035555573661 1 0.511762380599976 experiment 0.843928888852678 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control MIF ENSG00000240972 CDS Human protein_coding chr22:24236701 chr22:24236682 nonsynonymous SNV 1.000 2 40 hm1A_associated_SNPs_1146 0 0 0 5 24236676 24236697 mRNA hsa-miR-30c LOC284889 miRanda miRanda
2192 chr22 24236682 24236682 1 - C A ACC 24236701 - 24236681 24236721 41 GAGGAACCCGTCCGGCACGGAGGCGCGGGGCACGTTGGTGT GAGGAACCCGTCCGGCACGGAGGCGCGGGGCACGTTGGTTT < 41bp 1 0.578035555573661 1 0.511762380599976 experiment 0.843928888852678 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control MIF ENSG00000240972 CDS Human protein_coding chr22:24236701 chr22:24236682 nonsynonymous SNV 1.000 2 40 hm1A_associated_SNPs_1146 0 0 0 5 24236676 24236697 mRNA hsa-miR-30d LOC284889 miRanda miRanda
2192 chr22 24236682 24236682 1 - C A ACC 24236701 - 24236681 24236721 41 GAGGAACCCGTCCGGCACGGAGGCGCGGGGCACGTTGGTGT GAGGAACCCGTCCGGCACGGAGGCGCGGGGCACGTTGGTTT < 41bp 1 0.578035555573661 1 0.511762380599976 experiment 0.843928888852678 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control MIF ENSG00000240972 CDS Human protein_coding chr22:24236701 chr22:24236682 nonsynonymous SNV 1.000 2 40 hm1A_associated_SNPs_1146 0 0 0 5 24236676 24236696 mRNA hsa-miR-30b LOC284889 miRanda miRanda
2192 chr22 24236682 24236682 1 - C A ACC 24236701 - 24236681 24236721 41 GAGGAACCCGTCCGGCACGGAGGCGCGGGGCACGTTGGTGT GAGGAACCCGTCCGGCACGGAGGCGCGGGGCACGTTGGTTT < 41bp 1 0.578035555573661 1 0.511762380599976 experiment 0.843928888852678 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control MIF ENSG00000240972 CDS Human protein_coding chr22:24236701 chr22:24236682 nonsynonymous SNV 1.000 2 40 hm1A_associated_SNPs_1146 0 0 0 5 24236676 24236699 mRNA hsa-miR-30e LOC284889 miRanda miRanda
2192 chr11 65268881 65268881 1 + G A BLCA 65268882 + 65268862 65268902 41 TCTCACGTTGAGGTCTGTGGAAGAGATGTCCATTGGAGAAA TCTCACGTTGAGGTCTGTGAAAGAGATGTCCATTGGAGAAA < 41bp 1 0.161804712840893 1 0.0744214355945587 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268882 chr11:65268881 . . 0 20 hm1A_associated_SNPs_1175 0 0 1 2 65268878 65268901 lncRNA hsa-miR-515-5p MALAT1 miRanda starBase2
2192 chr11 65268881 65268881 1 + G A BLCA 65268882 + 65268862 65268902 41 TCTCACGTTGAGGTCTGTGGAAGAGATGTCCATTGGAGAAA TCTCACGTTGAGGTCTGTGAAAGAGATGTCCATTGGAGAAA < 41bp 1 0.161804712840893 1 0.0744214355945587 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268882 chr11:65268881 . . 0 20 hm1A_associated_SNPs_1175 0 0 1 2 65268880 65268901 lncRNA hsa-miR-519e-5p MALAT1 miRanda starBase2
2192 chr11 65268884 65268884 1 + G A BLCA 65268882 + 65268862 65268902 41 TCTCACGTTGAGGTCTGTGGAAGAGATGTCCATTGGAGAAA TCTCACGTTGAGGTCTGTGGAAAAGATGTCCATTGGAGAAA < 41bp 1 0.216194943867126 1 0.106681346893311 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268882 chr11:65268884 . . 0 23 hm1A_associated_SNPs_1176 0 0 1 2 65268878 65268901 lncRNA hsa-miR-515-5p MALAT1 miRanda starBase2
2192 chr11 65268884 65268884 1 + G A BLCA 65268882 + 65268862 65268902 41 TCTCACGTTGAGGTCTGTGGAAGAGATGTCCATTGGAGAAA TCTCACGTTGAGGTCTGTGGAAAAGATGTCCATTGGAGAAA < 41bp 1 0.216194943867126 1 0.106681346893311 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268882 chr11:65268884 . . 0 23 hm1A_associated_SNPs_1176 0 0 1 2 65268880 65268901 lncRNA hsa-miR-519e-5p MALAT1 miRanda starBase2
2192 chr19 45563675 45563675 1 + G A BLCA 45563659 + 45563639 45563679 41 CTCTATAGGATGCTCCGGAAAGACAAGGAGGAGGCAGAGGC CTCTATAGGATGCTCCGGAAAGACAAGGAGGAGGCAAAGGC < 41bp 1 0.459964250571709 1 0.682146608829498 experiment 1 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control CLASRP ENSG00000104859 CDS Human protein_coding chr19:45563659 chr19:45563675 nonsynonymous SNV 0.999 3 37 hm1A_associated_SNPs_1187 0 0 1 1 45563659 45563682 mRNA hsa-miR-328 SFRS16 miRanda miRanda
2192 chr5 7870910 7870910 1 + G A BLCA 7870908 + 7870888 7870928 41 CTGTTACATGCCTTGAAGTGATGAGGAGGTTTCTGTTACTA CTGTTACATGCCTTGAAGTGATAAGGAGGTTTCTGTTACTA < 41bp 1 0.598969161811214 1 0.121905446052551 experiment 0.802061676377571 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7870908 chr5:7870910 nonsynonymous SNV 0.941 0 23 hm1A_associated_SNPs_1200 0 0 1 2 7870905 7870927 mRNA hsa-miR-194 MTRR miRanda miRanda
2192 chr5 7870910 7870910 1 + G A BLCA 7870908 + 7870888 7870928 41 CTGTTACATGCCTTGAAGTGATGAGGAGGTTTCTGTTACTA CTGTTACATGCCTTGAAGTGATAAGGAGGTTTCTGTTACTA < 41bp 1 0.598969161811214 1 0.121905446052551 experiment 0.802061676377571 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7870908 chr5:7870910 nonsynonymous SNV 0.941 0 23 hm1A_associated_SNPs_1200 0 0 1 2 7870909 7870930 mRNA hsa-miR-410 MTRR miRanda miRanda
2192 chr11 65273619 65273619 1 + G T BLCA 65273630 + 65273610 65273650 41 GGTTTCCAGGACGGGGTTCAAATCCCTGCGGCGTCTTTGCT GGTTTCCAGTACGGGGTTCAAATCCCTGCGGCGTCTTTGCT < 41bp 1 0.663917152467569 1 0.925583958625793 experiment 0.672165695064862 Functional Loss 29072297;GSE97420;m1A-seq;HEK293T;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273630 chr11:65273619 . . 0 10 hm1A_associated_SNPs_1231 0 0 1 1 65273604 65273625 lncRNA hsa-miR-1247-5p MALAT1 miRanda starBase2
2192 chr11 65273364 65273364 1 + G T BLCA 65273351 + 65273331 65273371 41 ATGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCT ATGTAACTTGTAGACTGGAGAAGATAGGCATTTTAGTGGCT < 41bp 1 0.65225880830893 1 0.14005121588707 experiment 0.695482383382141 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273351 chr11:65273364 . . 0 34 hm1A_associated_SNPs_1232 0 0 1 3 65273341 65273365 lncRNA hsa-miR-105-5p MALAT1 miRanda starBase2
2192 chr11 65273364 65273364 1 + G T BLCA 65273351 + 65273331 65273371 41 ATGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCT ATGTAACTTGTAGACTGGAGAAGATAGGCATTTTAGTGGCT < 41bp 1 0.65225880830893 1 0.14005121588707 experiment 0.695482383382141 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273351 chr11:65273364 . . 0 34 hm1A_associated_SNPs_1232 0 0 1 3 65273345 65273365 lncRNA hsa-miR-7853-5p MALAT1 miRanda starBase2
2192 chr11 65273364 65273364 1 + G T BLCA 65273351 + 65273331 65273371 41 ATGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCT ATGTAACTTGTAGACTGGAGAAGATAGGCATTTTAGTGGCT < 41bp 1 0.65225880830893 1 0.14005121588707 experiment 0.695482383382141 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273351 chr11:65273364 . . 0 34 hm1A_associated_SNPs_1232 0 0 1 3 65273348 65273368 lncRNA hsa-miR-888-5p MALAT1 miRanda starBase2
2192 chr11 65273364 65273364 1 + G T BLCA 65273352 + 65273332 65273372 41 TGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCTG TGTAACTTGTAGACTGGAGAAGATAGGCATTTTAGTGGCTG < 41bp 1 0.647528621918665 1 0.317052155733109 experiment 0.704942756162669 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273352 chr11:65273364 . . 0 33 hm1A_associated_SNPs_1233 0 0 1 3 65273341 65273365 lncRNA hsa-miR-105-5p MALAT1 miRanda starBase2
2192 chr11 65273364 65273364 1 + G T BLCA 65273352 + 65273332 65273372 41 TGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCTG TGTAACTTGTAGACTGGAGAAGATAGGCATTTTAGTGGCTG < 41bp 1 0.647528621918665 1 0.317052155733109 experiment 0.704942756162669 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273352 chr11:65273364 . . 0 33 hm1A_associated_SNPs_1233 0 0 1 3 65273345 65273365 lncRNA hsa-miR-7853-5p MALAT1 miRanda starBase2
2192 chr11 65273364 65273364 1 + G T BLCA 65273352 + 65273332 65273372 41 TGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCTG TGTAACTTGTAGACTGGAGAAGATAGGCATTTTAGTGGCTG < 41bp 1 0.647528621918665 1 0.317052155733109 experiment 0.704942756162669 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273352 chr11:65273364 . . 0 33 hm1A_associated_SNPs_1233 0 0 1 3 65273348 65273368 lncRNA hsa-miR-888-5p MALAT1 miRanda starBase2
2192 chr11 65273350 65273350 1 + G T BLCA 65273351 + 65273331 65273371 41 ATGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCT ATGTAACTTGTAGACTGGATAAGATAGGCATTTGAGTGGCT < 41bp 1 0.541844005866219 1 0.210929334163666 experiment 0.916311988267562 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273351 chr11:65273350 . . 0 20 hm1A_associated_SNPs_1234 0 0 1 3 65273341 65273365 lncRNA hsa-miR-105-5p MALAT1 miRanda starBase2
2192 chr11 65273350 65273350 1 + G T BLCA 65273351 + 65273331 65273371 41 ATGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCT ATGTAACTTGTAGACTGGATAAGATAGGCATTTGAGTGGCT < 41bp 1 0.541844005866219 1 0.210929334163666 experiment 0.916311988267562 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273351 chr11:65273350 . . 0 20 hm1A_associated_SNPs_1234 0 0 1 3 65273345 65273365 lncRNA hsa-miR-7853-5p MALAT1 miRanda starBase2
2192 chr11 65273350 65273350 1 + G T BLCA 65273351 + 65273331 65273371 41 ATGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCT ATGTAACTTGTAGACTGGATAAGATAGGCATTTGAGTGGCT < 41bp 1 0.541844005866219 1 0.210929334163666 experiment 0.916311988267562 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273351 chr11:65273350 . . 0 20 hm1A_associated_SNPs_1234 0 0 1 3 65273348 65273368 lncRNA hsa-miR-888-5p MALAT1 miRanda starBase2
2192 chr11 65273350 65273350 1 + G T BLCA 65273352 + 65273332 65273372 41 TGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCTG TGTAACTTGTAGACTGGATAAGATAGGCATTTGAGTGGCTG < 41bp 1 0.594828163156646 1 0.133580654859543 experiment 0.810343673686707 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273352 chr11:65273350 . . 0 19 hm1A_associated_SNPs_1235 0 0 1 3 65273341 65273365 lncRNA hsa-miR-105-5p MALAT1 miRanda starBase2
2192 chr11 65273350 65273350 1 + G T BLCA 65273352 + 65273332 65273372 41 TGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCTG TGTAACTTGTAGACTGGATAAGATAGGCATTTGAGTGGCTG < 41bp 1 0.594828163156646 1 0.133580654859543 experiment 0.810343673686707 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273352 chr11:65273350 . . 0 19 hm1A_associated_SNPs_1235 0 0 1 3 65273345 65273365 lncRNA hsa-miR-7853-5p MALAT1 miRanda starBase2
2192 chr11 65273350 65273350 1 + G T BLCA 65273352 + 65273332 65273372 41 TGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCTG TGTAACTTGTAGACTGGATAAGATAGGCATTTGAGTGGCTG < 41bp 1 0.594828163156646 1 0.133580654859543 experiment 0.810343673686707 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273352 chr11:65273350 . . 0 19 hm1A_associated_SNPs_1235 0 0 1 3 65273348 65273368 lncRNA hsa-miR-888-5p MALAT1 miRanda starBase2
2192 chr12 8866535 8866535 1 + G A BLCA 8866521 + 8866501 8866541 41 AGATCGTCGCATCAGGGAAGACTATCCTCAAAAAGAGATTT AGATCGTCGCATCAGGGAAGACTATCCTCAAAAAAAGATTT < 41bp 1 0.625615328175505 1 0.963710963726044 experiment 0.748769343648991 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock|26863196;GSE70485;m1A-seq;HepG2;Control RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8866521 chr12:8866535 nonsynonymous SNV 1.000 0 35 hm1A_associated_SNPs_1238 0 0 1 1 8866520 8866541 mRNA hsa-miR-216b RIMKLB miRanda miRanda
2192 chr12 8866535 8866535 1 + G A BLCA 8866549 + 8866529 8866569 41 CAAAAAGAGATTTTACGAGCATTGAAGGCCAAATGTTGTGA CAAAAAAAGATTTTACGAGCATTGAAGGCCAAATGTTGTGA < 41bp 1 0.727549545174359 1 0.871456265449524 experiment 0.544900909651282 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8866549 chr12:8866535 nonsynonymous SNV 1.000 0 7 hm1A_associated_SNPs_1239 0 0 1 1 8866520 8866541 mRNA hsa-miR-216b RIMKLB miRanda miRanda
2192 chr17 76187059 76187059 1 + G C BLCA 76187067 + 76187047 76187087 41 GCAGGAGCTGGAGAATCAGTACTGTCCCAGCCGATGGGTTG GCAGGAGCTGGACAATCAGTACTGTCCCAGCCGATGGGTTG < 41bp 1 0.492879501944833 1 0.187898844480515 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Glucose_starv_4h AFMID ENSG00000183077 CDS Human protein_coding chr17:76187067 chr17:76187059 nonsynonymous SNV 0.128 0 13 hm1A_associated_SNPs_1241 0 0 1 1 76187052 76187072 mRNA hsa-miR-101 AFMID miRanda miRanda
2192 chr11 65271270 65271270 1 + G T BLCA 65271251 + 65271231 65271271 41 CAGATCAGGATTTGAGCGGAAGAACGAATGTAACTTTAAGG CAGATCAGGATTTGAGCGGAAGAACGAATGTAACTTTAATG < 41bp 1 0.389782069266287 1 0.649316787719727 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271251 chr11:65271270 . . 0 40 hm1A_associated_SNPs_1260 0 0 1 1 65271270 65271291 lncRNA hsa-miR-3163 MALAT1 miRanda starBase2
2192 chr11 65271270 65271270 1 + G T BLCA 65271254 + 65271234 65271274 41 ATCAGGATTTGAGCGGAAGAACGAATGTAACTTTAAGGCAG ATCAGGATTTGAGCGGAAGAACGAATGTAACTTTAATGCAG < 41bp 1 0.421649212535441 1 0.805707097053528 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271254 chr11:65271270 . . 0 37 hm1A_associated_SNPs_1261 0 0 1 1 65271270 65271291 lncRNA hsa-miR-3163 MALAT1 miRanda starBase2
2192 chr11 65271270 65271270 1 + G T BLCA 65271258 + 65271238 65271278 41 GGATTTGAGCGGAAGAACGAATGTAACTTTAAGGCAGGAAA GGATTTGAGCGGAAGAACGAATGTAACTTTAATGCAGGAAA < 41bp 1 0.51549167506583 1 0.233082115650177 experiment 0.96901664986834 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271258 chr11:65271270 . . 0 33 hm1A_associated_SNPs_1262 0 0 1 1 65271270 65271291 lncRNA hsa-miR-3163 MALAT1 miRanda starBase2
2192 chr7 158672547 158672547 1 + C T BLCA 158672533 + 158672513 158672553 41 GAGAAATATTCCAAAGAGAAAAGTAATTCATTCTCTGACAA GAGAAATATTCCAAAGAGAAAAGTAATTCATTCTTTGACAA < 41bp 1 0.184146177485291 1 0.183407962322235 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Glucose_starv_4h WDR60 ENSG00000126870 CDS Human protein_coding chr7:158672533 chr7:158672547 nonsynonymous SNV 0.012 0 35 hm1A_associated_SNPs_1302 0 0 1 1 158672527 158672548 mRNA hsa-miR-143 WDR60 miRanda miRanda
2192 chr1 150039931 150039931 1 + C T BLCA 150039937 + 150039917 150039957 41 GAACGTGGTTTTTGCTGTGAAGCAGTACATTTCCAAAATGA GAACGTGGTTTTTGTTGTGAAGCAGTACATTTCCAAAATGA < 41bp 1 0.656663062847819 1 0.0547750294208527 experiment 0.686673874304363 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Glucose_starv_4h VPS45 ENSG00000136631 CDS Human protein_coding chr1:150039937 chr1:150039931 nonsynonymous SNV 1.000 2 15 hm1A_associated_SNPs_1312 0 0 1 1 150039915 150039937 mRNA hsa-miR-377 VPS45 miRanda miRanda
2192 chr3 101311591 101311591 1 + C T BLCA 101311581 + 101311561 101311601 41 ATCTCATCTTGGAAATGTCCATGACCAAGACAATTAAATGA ATCTCATCTTGGAAATGTCCATGACCAAGATAATTAAATGA < 41bp 1 0.706534882580995 1 0.951403558254242 experiment 0.58693023483801 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control PCNP ENSG00000081154 CDS Human protein_coding chr3:101311581 chr3:101311591 synonymous SNV . 0 31 hm1A_associated_SNPs_1315 0 0 1 2 101311576 101311596 mRNA hsa-miR-219-5p PCNP miRanda miRanda
2192 chr3 101311591 101311591 1 + C T BLCA 101311581 + 101311561 101311601 41 ATCTCATCTTGGAAATGTCCATGACCAAGACAATTAAATGA ATCTCATCTTGGAAATGTCCATGACCAAGATAATTAAATGA < 41bp 1 0.706534882580995 1 0.951403558254242 experiment 0.58693023483801 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control PCNP ENSG00000081154 CDS Human protein_coding chr3:101311581 chr3:101311591 synonymous SNV . 0 31 hm1A_associated_SNPs_1315 0 0 1 2 101311572 101311592 mRNA hsa-miR-431 PCNP miRanda miRanda
2192 chrX 54581048 54581048 1 + G A BLCA 54581061 + 54581041 54581081 41 CCCACTTGAAATGGAGATCAAGTTGCTCCATTCTCCGATGA CCCACTTAAAATGGAGATCAAGTTGCTCCATTCTCCGATGA < 41bp 1 0.347904334291344 1 0.52418726682663 experiment 1 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control GNL3L ENSG00000130119 CDS Human protein_coding chrX:54581061 chrX:54581048 nonsynonymous SNV 0.914 0 8 hm1A_associated_SNPs_1350 0 0 1 3 54581035 54581057 mRNA hsa-miR-136 GNL3L miRanda miRanda
2192 chrX 54581048 54581048 1 + G A BLCA 54581061 + 54581041 54581081 41 CCCACTTGAAATGGAGATCAAGTTGCTCCATTCTCCGATGA CCCACTTAAAATGGAGATCAAGTTGCTCCATTCTCCGATGA < 41bp 1 0.347904334291344 1 0.52418726682663 experiment 1 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control GNL3L ENSG00000130119 CDS Human protein_coding chrX:54581061 chrX:54581048 nonsynonymous SNV 0.914 0 8 hm1A_associated_SNPs_1350 0 0 1 3 54581046 54581069 mRNA hsa-miR-146a GNL3L miRanda miRanda
2192 chrX 54581048 54581048 1 + G A BLCA 54581061 + 54581041 54581081 41 CCCACTTGAAATGGAGATCAAGTTGCTCCATTCTCCGATGA CCCACTTAAAATGGAGATCAAGTTGCTCCATTCTCCGATGA < 41bp 1 0.347904334291344 1 0.52418726682663 experiment 1 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control GNL3L ENSG00000130119 CDS Human protein_coding chrX:54581061 chrX:54581048 nonsynonymous SNV 0.914 0 8 hm1A_associated_SNPs_1350 0 0 1 3 54581046 54581069 mRNA hsa-miR-146b-5p GNL3L miRanda miRanda
2192 chr11 65273616 65273616 1 + C T BLCA 65273630 + 65273610 65273650 41 GGTTTCCAGGACGGGGTTCAAATCCCTGCGGCGTCTTTGCT GGTTTCTAGGACGGGGTTCAAATCCCTGCGGCGTCTTTGCT < 41bp 1 0.651758427194654 1 0.940879583358765 experiment 0.696483145610691 Functional Loss 29072297;GSE97420;m1A-seq;HEK293T;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273630 chr11:65273616 . . 0 7 hm1A_associated_SNPs_1384 0 0 0 1 65273604 65273625 lncRNA hsa-miR-1247-5p MALAT1 miRanda starBase2
2192 chr11 65273615 65273615 1 + C T BLCA 65273630 + 65273610 65273650 41 GGTTTCCAGGACGGGGTTCAAATCCCTGCGGCGTCTTTGCT GGTTTTCAGGACGGGGTTCAAATCCCTGCGGCGTCTTTGCT < 41bp 1 0.642968229835219 1 0.917489290237427 experiment 0.714063540329561 Functional Loss 29072297;GSE97420;m1A-seq;HEK293T;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273630 chr11:65273615 . . 0 6 hm1A_associated_SNPs_1386 0 0 0 1 65273604 65273625 lncRNA hsa-miR-1247-5p MALAT1 miRanda starBase2
2192 chr9 131456069 131456069 1 + C G BLCA 131456075 + 131456055 131456095 41 GATATTTGGCCAAACCCATTACAGTACTACTTGGTGAGTTC GATATTTGGCCAAAGCCATTACAGTACTACTTGGTGAGTTC < 41bp 1 0.0732848084144847 1 0.057109147310257 experiment 1 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control SET ENSG00000119335 CDS Human protein_coding chr9:131456075 chr9:131456069 nonsynonymous SNV 0.997 4 15 hm1A_associated_SNPs_1388 0 0 1 1 131456065 131456086 mRNA hsa-miR-411 SET miRanda miRanda
2192 chr19 1272041 1272041 1 + G A BRCA 1272033 + 1272013 1272053 41 CTCGGGCGGGTCCTACAGAGACAGTTATGACAGTTACGGTA CTCGGGCGGGTCCTACAGAGACAGTTATAACAGTTACGGTA < 41bp 1 0.444577078726844 1 0.634950399398804 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272033 chr19:1272041 nonsynonymous SNV 0.594 2 29 hm1A_associated_SNPs_1405 0 0 1 1 1272040 1272061 mRNA hsa-miR-218 CIRBP miRanda miRanda
2192 chr20 60963388 60963388 1 + C T BRCA 60963398 + 60963378 60963418 41 ATTCCATTCTCCGATTGGCCAAGGCCGATGGCATCGTCTCA ATTCCATTCTTCGATTGGCCAAGGCCGATGGCATCGTCTCA < 41bp 1 0.735993097626429 1 0.387789368629456 experiment 0.528013804747142 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 CDS Human protein_coding chr20:60963398 chr20:60963388 synonymous SNV . 0 11 hm1A_associated_SNPs_1436 0 0 1 1 60963376 60963400 mRNA hsa-miR-182 RPS21 miRanda miRanda
2192 chr5 68419204 68419204 1 + G C BRCA 68419198 + 68419178 68419218 41 AAAGATGCCTGCCAGGTTCTACTCCTGAGATTGCCACCAGA AAAGATGCCTGCCAGGTTCTACTCCTCAGATTGCCACCAGA < 41bp 1 0.29871074266846 1 0.347687184810638 experiment 1 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68419198 chr5:68419204 synonymous SNV . 0 27 hm1A_associated_SNPs_1438 0 0 1 1 68419187 68419210 mRNA hsa-miR-216a SLC30A5 miRanda miRanda
2192 chr19 50363362 50363362 1 + C T CESC 50363343 + 50363323 50363363 41 CTTCATTGGCCTCATCCCCCATGACCAGGGCAACTTTGTCA CTTCATTGGCCTCATCCCCCATGACCAGGGCAACTTTGTTA < 41bp 1 0.755696956090401 1 0.891226053237915 experiment 0.488606087819198 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50363343 chr19:50363362 nonsynonymous SNV 0.998 1 40 hm1A_associated_SNPs_1475 0 0 1 1 50363361 50363383 mRNA hsa-miR-425 PTOV1 miRanda miRanda
2192 chr8 110573148 110573148 1 + G T CESC 110573140 + 110573120 110573160 41 AGAAGAAGATGCAGCCTGGCAAGCAGAAGAAGTTCTGAGGT AGAAGAAGATGCAGCCTGGCAAGCAGAATAAGTTCTGAGGT < 41bp 1 0.52695124166215 1 0.283349096775055 experiment 0.9460975166757 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573140 chr8:110573148 stopgain 1.000 1 29 hm1A_associated_SNPs_1483 0 0 0 3 110573135 110573157 mRNA hsa-miR-146a EBAG9 miRanda miRanda
2192 chr8 110573148 110573148 1 + G T CESC 110573140 + 110573120 110573160 41 AGAAGAAGATGCAGCCTGGCAAGCAGAAGAAGTTCTGAGGT AGAAGAAGATGCAGCCTGGCAAGCAGAATAAGTTCTGAGGT < 41bp 1 0.52695124166215 1 0.283349096775055 experiment 0.9460975166757 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573140 chr8:110573148 stopgain 1.000 1 29 hm1A_associated_SNPs_1483 0 0 0 3 110573136 110573157 mRNA hsa-miR-146b-5p EBAG9 miRanda miRanda
2192 chr8 110573148 110573148 1 + G T CESC 110573140 + 110573120 110573160 41 AGAAGAAGATGCAGCCTGGCAAGCAGAAGAAGTTCTGAGGT AGAAGAAGATGCAGCCTGGCAAGCAGAATAAGTTCTGAGGT < 41bp 1 0.52695124166215 1 0.283349096775055 experiment 0.9460975166757 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573140 chr8:110573148 stopgain 1.000 1 29 hm1A_associated_SNPs_1483 0 0 0 3 110573127 110573148 mRNA hsa-miR-544 EBAG9 miRanda miRanda
2192 chr19 803601 803601 1 + G A CESC 803598 + 803578 803618 41 TTTCTCTACTTGTGTCACTAACGGACCGTTTATCATGAGCA TTTCTCTACTTGTGTCACTAACGAACCGTTTATCATGAGCA < 41bp 1 0.230765327543161 1 0.419319778680801 experiment 1 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803598 chr19:803601 nonsynonymous SNV 0.618 2 24 hm1A_associated_SNPs_1484 0 0 1 1 803592 803616 mRNA hsa-miR-433 PTBP1 miRanda miRanda
2192 chr3 101311589 101311589 1 + G C CESC 101311581 + 101311561 101311601 41 ATCTCATCTTGGAAATGTCCATGACCAAGACAATTAAATGA ATCTCATCTTGGAAATGTCCATGACCAACACAATTAAATGA < 41bp 1 0.709743226079173 1 0.852783560752869 experiment 0.580513547841654 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control PCNP ENSG00000081154 CDS Human protein_coding chr3:101311581 chr3:101311589 nonsynonymous SNV 1.000 2 29 hm1A_associated_SNPs_1519 0 0 1 2 101311576 101311596 mRNA hsa-miR-219-5p PCNP miRanda miRanda
2192 chr3 101311589 101311589 1 + G C CESC 101311581 + 101311561 101311601 41 ATCTCATCTTGGAAATGTCCATGACCAAGACAATTAAATGA ATCTCATCTTGGAAATGTCCATGACCAACACAATTAAATGA < 41bp 1 0.709743226079173 1 0.852783560752869 experiment 0.580513547841654 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control PCNP ENSG00000081154 CDS Human protein_coding chr3:101311581 chr3:101311589 nonsynonymous SNV 1.000 2 29 hm1A_associated_SNPs_1519 0 0 1 2 101311572 101311592 mRNA hsa-miR-431 PCNP miRanda miRanda
2192 chr19 579536 579536 1 + C G CESC 579524 + 579504 579544 41 CACAGTCTTCACTACCGTAGAAGACCTTGGCTCCAAGATAC CACAGTCTTCACTACCGTAGAAGACCTTGGCTGCAAGATAC < 41bp 1 0.458213113244359 1 0.0911141335964203 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579524 chr19:579536 nonsynonymous SNV 0.015 3 33 hm1A_associated_SNPs_1550 0 0 1 1 579531 579555 mRNA hsa-miR-125a-3p BSG miRanda miRanda
2192 chr11 65268625 65268625 1 + T G CHOL 65268622 + 65268602 65268642 41 TGAATAGATGACCTGTTTTTACTTCCTCACCCTGAATTCGT TGAATAGATGACCTGTTTTTACTGCCTCACCCTGAATTCGT < 41bp 1 0.0875597643120614 1 0.0425971150398254 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268622 chr11:65268625 . . 0 24 hm1A_associated_SNPs_1585 0 0 1 1 65268616 65268639 lncRNA hsa-miR-506-5p MALAT1 miRanda starBase2
2192 chr11 65268621 65268621 1 + T C CHOL 65268622 + 65268602 65268642 41 TGAATAGATGACCTGTTTTTACTTCCTCACCCTGAATTCGT TGAATAGATGACCTGTTTTCACTTCCTCACCCTGAATTCGT < 41bp 1 0.169107797804961 1 0.0681748688220978 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268622 chr11:65268621 . . 0 20 hm1A_associated_SNPs_1587 0 0 1 1 65268616 65268639 lncRNA hsa-miR-506-5p MALAT1 miRanda starBase2
2192 chr17 35310399 35310399 1 + A G COAD 35310392 + 35310372 35310412 41 TTGAGAAATTTACCAAGGGAATGGATGACCTTGGGAGCAGT TTGAGAAATTTACCAAGGGAATGGATGGCCTTGGGAGCAGT < 41bp 1 0.580614519106893 1 0.761191964149475 experiment 0.838770961786215 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control AATF ENSG00000108270 CDS Human other chr17:35310392 chr17:35310399 nonsynonymous SNV 0.988 2 28 hm1A_associated_SNPs_1671 0 0 1 1 35310390 35310409 mRNA hsa-miR-150 AATF miRanda miRanda
2192 chrX 54581043 54581043 1 + C A COAD 54581061 + 54581041 54581081 41 CCCACTTGAAATGGAGATCAAGTTGCTCCATTCTCCGATGA CCAACTTGAAATGGAGATCAAGTTGCTCCATTCTCCGATGA < 41bp 1 0.34242434195947 1 0.521546423435211 experiment 1 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control GNL3L ENSG00000130119 CDS Human protein_coding chrX:54581061 chrX:54581043 nonsynonymous SNV 0.910 0 3 hm1A_associated_SNPs_1689 0 0 1 1 54581035 54581057 mRNA hsa-miR-136 GNL3L miRanda miRanda
2192 chr2 74687456 74687456 1 + G A COAD 74687446 + 74687426 74687466 41 TGGCCCCAGGCCGCCCCTTGACTGCTTCCAGTGAACAAACC TGGCCCCAGGCCGCCCCTTGACTGCTTCCAATGAACAAACC < 41bp 1 0.732204149765049 1 0.0600349307060242 experiment 0.535591700469902 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control WBP1 ENSG00000239779 CDS Human protein_coding chr2:74687446 chr2:74687456 nonsynonymous SNV 0.483 0 31 hm1A_associated_SNPs_1732 0 0 1 1 74687451 74687472 mRNA hsa-miR-214 WBP1 miRanda miRanda
2192 chr8 110573135 110573135 1 + C A COAD 110573140 + 110573120 110573160 41 AGAAGAAGATGCAGCCTGGCAAGCAGAAGAAGTTCTGAGGT AGAAGAAGATGCAGCATGGCAAGCAGAAGAAGTTCTGAGGT < 41bp 1 0.574976313551965 1 0.186311304569244 experiment 0.850047372896071 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573140 chr8:110573135 synonymous SNV . 0 16 hm1A_associated_SNPs_1758 0 0 0 2 110573135 110573157 mRNA hsa-miR-146a EBAG9 miRanda miRanda
2192 chr8 110573135 110573135 1 + C A COAD 110573140 + 110573120 110573160 41 AGAAGAAGATGCAGCCTGGCAAGCAGAAGAAGTTCTGAGGT AGAAGAAGATGCAGCATGGCAAGCAGAAGAAGTTCTGAGGT < 41bp 1 0.574976313551965 1 0.186311304569244 experiment 0.850047372896071 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573140 chr8:110573135 synonymous SNV . 0 16 hm1A_associated_SNPs_1758 0 0 0 2 110573127 110573148 mRNA hsa-miR-544 EBAG9 miRanda miRanda
2192 chrX 54581051 54581051 1 + A G COAD 54581061 + 54581041 54581081 41 CCCACTTGAAATGGAGATCAAGTTGCTCCATTCTCCGATGA CCCACTTGAAGTGGAGATCAAGTTGCTCCATTCTCCGATGA < 41bp 1 0.352710394086244 1 0.488773047924042 experiment 1 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control GNL3L ENSG00000130119 CDS Human protein_coding chrX:54581061 chrX:54581051 nonsynonymous SNV 0.994 0 11 hm1A_associated_SNPs_1771 0 0 1 3 54581035 54581057 mRNA hsa-miR-136 GNL3L miRanda miRanda
2192 chrX 54581051 54581051 1 + A G COAD 54581061 + 54581041 54581081 41 CCCACTTGAAATGGAGATCAAGTTGCTCCATTCTCCGATGA CCCACTTGAAGTGGAGATCAAGTTGCTCCATTCTCCGATGA < 41bp 1 0.352710394086244 1 0.488773047924042 experiment 1 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control GNL3L ENSG00000130119 CDS Human protein_coding chrX:54581061 chrX:54581051 nonsynonymous SNV 0.994 0 11 hm1A_associated_SNPs_1771 0 0 1 3 54581046 54581069 mRNA hsa-miR-146a GNL3L miRanda miRanda
2192 chrX 54581051 54581051 1 + A G COAD 54581061 + 54581041 54581081 41 CCCACTTGAAATGGAGATCAAGTTGCTCCATTCTCCGATGA CCCACTTGAAGTGGAGATCAAGTTGCTCCATTCTCCGATGA < 41bp 1 0.352710394086244 1 0.488773047924042 experiment 1 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control GNL3L ENSG00000130119 CDS Human protein_coding chrX:54581061 chrX:54581051 nonsynonymous SNV 0.994 0 11 hm1A_associated_SNPs_1771 0 0 1 3 54581046 54581069 mRNA hsa-miR-146b-5p GNL3L miRanda miRanda
2192 chr9 139726739 139726739 1 + C T COAD 139726757 + 139726737 139726777 41 TCCGCTATGCTGAGTCTTCCATGAAGAACAGCTTCGGCCTA TCTGCTATGCTGAGTCTTCCATGAAGAACAGCTTCGGCCTA < 41bp 1 0.794668867017618 1 0.975492596626282 experiment 0.410662265964764 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139726757 chr9:139726739 nonsynonymous SNV 0.997 4 3 hm1A_associated_SNPs_1794 0 0 1 1 139726734 139726757 mRNA hsa-miR-7 C9orf86 miRanda miRanda
2192 chr2 217366127 217366127 1 + G A GBM 217366108 + 217366088 217366128 41 GTCCGCCATCAGAAGACTGAAGGAGTTGAAAGACCAGTAGA GTCCGCCATCAGAAGACTGAAGGAGTTGAAAGACCAGTAAA < 41bp 1 0.670908142531453 1 0.758997201919556 experiment 0.658183714937095 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217366108 chr2:217366127 synonymous SNV . 0 40 hm1A_associated_SNPs_1993 0 0 1 1 217366112 217366136 mRNA hsa-miR-28-5p RPL37A miRanda miRanda
2192 chr2 217366127 217366127 1 + G A GBM 217366111 + 217366091 217366131 41 CGCCATCAGAAGACTGAAGGAGTTGAAAGACCAGTAGACGC CGCCATCAGAAGACTGAAGGAGTTGAAAGACCAGTAAACGC < 41bp 1 0.686809597748233 1 0.809376537799835 experiment 0.626380804503535 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217366111 chr2:217366127 synonymous SNV . 0 37 hm1A_associated_SNPs_1994 0 0 1 1 217366112 217366136 mRNA hsa-miR-28-5p RPL37A miRanda miRanda
2192 chr2 217366127 217366127 1 + G A GBM 217366117 + 217366097 217366137 41 CAGAAGACTGAAGGAGTTGAAAGACCAGTAGACGCTCCTCT CAGAAGACTGAAGGAGTTGAAAGACCAGTAAACGCTCCTCT < 41bp 1 0.712796995457446 1 0.236470878124237 experiment 0.574406009085108 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217366117 chr2:217366127 synonymous SNV . 0 31 hm1A_associated_SNPs_1995 0 0 1 1 217366112 217366136 mRNA hsa-miR-28-5p RPL37A miRanda miRanda
2192 chr16 29690499 29690499 1 + C T GBM 29690516 + 29690496 29690536 41 AGCCCAGACAGCTGCAAGTCACCATGGACGCTGAAGGTAAA AGCTCAGACAGCTGCAAGTCACCATGGACGCTGAAGGTAAA < 41bp 1 0.718894088757668 1 0.124023973941803 experiment 0.562211822484664 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control QPRT ENSG00000103485 UTR5 Human protein_coding chr16:29690516 chr16:29690499 . . 0 4 hm1A_associated_SNPs_2013 0 0 1 1 29690474 29690499 mRNA hsa-miR-138 QPRT miRanda miRanda
2192 chr11 65268899 65268899 1 + G T GBM 65268882 + 65268862 65268902 41 TCTCACGTTGAGGTCTGTGGAAGAGATGTCCATTGGAGAAA TCTCACGTTGAGGTCTGTGGAAGAGATGTCCATTGGATAAA < 41bp 1 0.183469819969246 1 0.0897432267665863 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268882 chr11:65268899 . . 0 38 hm1A_associated_SNPs_2018 0 0 1 2 65268878 65268901 lncRNA hsa-miR-515-5p MALAT1 miRanda starBase2
2192 chr11 65268899 65268899 1 + G T GBM 65268882 + 65268862 65268902 41 TCTCACGTTGAGGTCTGTGGAAGAGATGTCCATTGGAGAAA TCTCACGTTGAGGTCTGTGGAAGAGATGTCCATTGGATAAA < 41bp 1 0.183469819969246 1 0.0897432267665863 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268882 chr11:65268899 . . 0 38 hm1A_associated_SNPs_2018 0 0 1 2 65268880 65268901 lncRNA hsa-miR-519e-5p MALAT1 miRanda starBase2
2192 chr1 14099617 14099617 1 + C T GBM 14099627 + 14099607 14099647 41 AAACAAAATCCAAGACATACAACTGAAGACAAGTGAGCCAG AAACAAAATCTAAGACATACAACTGAAGACAAGTGAGCCAG < 41bp 1 0.303964254478006 1 0.0489924252033234 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control PRDM2 ENSG00000116731 CDS Human protein_coding chr1:14099627 chr1:14099617 stopgain 0.099 0 11 hm1A_associated_SNPs_2048 0 0 1 1 14099603 14099623 mRNA hsa-miR-431 PRDM2 miRanda miRanda
2192 chr19 1270944 1270944 1 + T C GBM 1270951 + 1270931 1270971 41 CCATGGCATCAGATGAAGGCAAACTTTTTGTTGGAGGGCTG CCATGGCATCAGACGAAGGCAAACTTTTTGTTGGAGGGCTG < 41bp 1 0.632212504607554 1 0.736850917339325 experiment 0.735574990784893 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control CIRBP ENSG00000099622 CDS Human protein_coding chr19:1270951 chr19:1270944 synonymous SNV . 0 14 hm1A_associated_SNPs_2063 0 0 1 1 1270929 1270950 mRNA hsa-miR-205 CIRBP miRanda miRanda
2192 chr5 72798854 72798854 1 + G C HNSC 72798845 + 72798825 72798865 41 ATTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGCT ATTACAGGCCATGCTGAGACAAAGCAGCTCACAGAAATGCT < 41bp 1 0.657032798382533 1 0.116333395242691 experiment 0.685934403234933 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control BTF3 ENSG00000145741 CDS Human protein_coding chr5:72798845 chr5:72798854 synonymous SNV . 0 30 hm1A_associated_SNPs_2103 0 0 1 1 72798853 72798878 mRNA hsa-miR-372 BTF3 miRanda miRanda
2192 chr20 32664559 32664559 1 + C T LIHC 32664568 + 32664548 32664588 41 ACAGATCAAGTCCAATATCGATGCCCTGCTGAGCCGCTTGG ACAGATCAAGTTCAATATCGATGCCCTGCTGAGCCGCTTGG < 41bp 1 0.792529266283945 1 0.953496694564819 experiment 0.41494146743211 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32664568 chr20:32664559 nonsynonymous SNV 0.996 2 12 hm1A_associated_SNPs_2371 0 0 1 1 32664557 32664579 mRNA hsa-miR-214 RALY miRanda miRanda
2192 chr19 1270937 1270937 1 + C T LIHC 1270951 + 1270931 1270971 41 CCATGGCATCAGATGAAGGCAAACTTTTTGTTGGAGGGCTG CCATGGTATCAGATGAAGGCAAACTTTTTGTTGGAGGGCTG < 41bp 1 0.611729377356439 1 0.303227841854095 experiment 0.776541245287123 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control CIRBP ENSG00000099622 CDS Human protein_coding chr19:1270951 chr19:1270937 nonsynonymous SNV 0.974 1 7 hm1A_associated_SNPs_2383 0 0 1 1 1270929 1270950 mRNA hsa-miR-205 CIRBP miRanda miRanda
2192 chr2 27599569 27599569 1 + G A LIHC 27599561 + 27599541 27599581 41 CCACGGCAATTTCGCCTTCGAGGGCATTGGAGATGAGGATC CCACGGCAATTTCGCCTTCGAGGGCATTAGAGATGAGGATC < 41bp 1 0.799696627133097 1 0.201034933328629 experiment 0.400606745733805 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control SNX17 ENSG00000115234 CDS Human protein_coding chr2:27599561 chr2:27599569 nonsynonymous SNV 1.000 4 29 hm1A_associated_SNPs_2396 0 0 1 1 27599548 27599569 mRNA hsa-miR-365 SNX17 miRanda miRanda
2192 chr6 42905837 42905837 1 + C T LUAD 42905853 + 42905833 42905873 41 TGTGCTGGTGGAAGAGTTTGAGGAGGTGATCGAGGACTGGT TGTGTTGGTGGAAGAGTTTGAGGAGGTGATCGAGGACTGGT < 41bp 1 0.454067542846335 1 0.876895427703857 experiment 1 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control CNPY3 ENSG00000137161 CDS Human protein_coding chr6:42905853 chr6:42905837 synonymous SNV . 0 5 hm1A_associated_SNPs_2417 0 0 1 2 42905835 42905858 mRNA hsa-miR-150 CNPY3 miRanda miRanda
2192 chr6 42905837 42905837 1 + C T LUAD 42905853 + 42905833 42905873 41 TGTGCTGGTGGAAGAGTTTGAGGAGGTGATCGAGGACTGGT TGTGTTGGTGGAAGAGTTTGAGGAGGTGATCGAGGACTGGT < 41bp 1 0.454067542846335 1 0.876895427703857 experiment 1 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control CNPY3 ENSG00000137161 CDS Human protein_coding chr6:42905853 chr6:42905837 synonymous SNV . 0 5 hm1A_associated_SNPs_2417 0 0 1 2 42905836 42905855 mRNA hsa-miR-371-5p CNPY3 miRanda miRanda
2192 chr11 65270747 65270747 1 + T A LUAD 65270728 + 65270708 65270748 41 CTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCATG CTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCAAG < 41bp 1 0.239920225029502 1 0.0317703783512115 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270728 chr11:65270747 . . 0 40 hm1A_associated_SNPs_2425 0 0 1 8 65270735 65270756 lncRNA hsa-miR-106a-5p MALAT1 miRanda starBase2
2192 chr11 65270747 65270747 1 + T A LUAD 65270728 + 65270708 65270748 41 CTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCATG CTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCAAG < 41bp 1 0.239920225029502 1 0.0317703783512115 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270728 chr11:65270747 . . 0 40 hm1A_associated_SNPs_2425 0 0 1 8 65270736 65270756 lncRNA hsa-miR-106b-5p MALAT1 miRanda starBase2
2192 chr11 65270747 65270747 1 + T A LUAD 65270728 + 65270708 65270748 41 CTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCATG CTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCAAG < 41bp 1 0.239920225029502 1 0.0317703783512115 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270728 chr11:65270747 . . 0 40 hm1A_associated_SNPs_2425 0 0 1 8 65270735 65270756 lncRNA hsa-miR-17-5p MALAT1 miRanda starBase2
2192 chr11 65270747 65270747 1 + T A LUAD 65270728 + 65270708 65270748 41 CTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCATG CTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCAAG < 41bp 1 0.239920225029502 1 0.0317703783512115 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270728 chr11:65270747 . . 0 40 hm1A_associated_SNPs_2425 0 0 1 8 65270735 65270756 lncRNA hsa-miR-20a-5p MALAT1 miRanda starBase2
2192 chr11 65270747 65270747 1 + T A LUAD 65270728 + 65270708 65270748 41 CTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCATG CTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCAAG < 41bp 1 0.239920225029502 1 0.0317703783512115 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270728 chr11:65270747 . . 0 40 hm1A_associated_SNPs_2425 0 0 1 8 65270735 65270756 lncRNA hsa-miR-20b-5p MALAT1 miRanda starBase2
2192 chr11 65270747 65270747 1 + T A LUAD 65270728 + 65270708 65270748 41 CTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCATG CTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCAAG < 41bp 1 0.239920225029502 1 0.0317703783512115 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270728 chr11:65270747 . . 0 40 hm1A_associated_SNPs_2425 0 0 1 8 65270735 65270756 lncRNA hsa-miR-519d-3p MALAT1 miRanda starBase2
2192 chr11 65270747 65270747 1 + T A LUAD 65270728 + 65270708 65270748 41 CTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCATG CTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCAAG < 41bp 1 0.239920225029502 1 0.0317703783512115 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270728 chr11:65270747 . . 0 40 hm1A_associated_SNPs_2425 0 0 1 8 65270735 65270756 lncRNA hsa-miR-526b-3p MALAT1 miRanda starBase2
2192 chr11 65270747 65270747 1 + T A LUAD 65270728 + 65270708 65270748 41 CTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCATG CTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCAAG < 41bp 1 0.239920225029502 1 0.0317703783512115 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270728 chr11:65270747 . . 0 40 hm1A_associated_SNPs_2425 0 0 1 8 65270734 65270756 lncRNA hsa-miR-93-5p MALAT1 miRanda starBase2
2192 chr7 151042434 151042434 1 + G T LUAD 151042449 + 151042429 151042469 41 TTCAGGGATGGCACAAAAGAAATATCTTCAAGCAAAATTGA TTCAGTGATGGCACAAAAGAAATATCTTCAAGCAAAATTGA < 41bp 1 0.37209033945591 1 0.144577205181122 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control NUB1 ENSG00000013374 CDS Human protein_coding chr7:151042449 chr7:151042434 nonsynonymous SNV 0.999 1 6 hm1A_associated_SNPs_2447 0 0 1 1 151042434 151042445 mRNA hsa-miR-455-5p NUB1 miRanda miRanda
2192 chr6 31592974 31592974 1 + C A LUAD 31592985 + 31592965 31593005 41 CTACTGTCACGATTCTCTCGAGAGGAATTTCCGACCCTGCA CTACTGTCAAGATTCTCTCGAGAGGAATTTCCGACCCTGCA < 41bp 1 0.691984949888942 1 0.527436137199402 experiment 0.616030100222116 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31592985 chr6:31592974 synonymous SNV . 0 10 hm1A_associated_SNPs_2483 0 0 1 1 31592950 31592975 mRNA hsa-miR-542-3p BAT2 miRanda miRanda
2192 chr20 32664960 32664960 1 + C A LUAD 32664952 + 32664932 32664972 41 AGCCGGCCACCAGCCCCCCAAGAGAACACAACTTCTGAGGC AGCCGGCCACCAGCCCCCCAAGAGAACAAAACTTCTGAGGC < 41bp 1 0.774135796318013 1 0.226184666156769 experiment 0.451728407363973 Functional Loss 26863196;GSE70486;m1A-seq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32664952 chr20:32664960 nonsynonymous SNV 0.018 1 29 hm1A_associated_SNPs_2504 0 0 1 1 32664941 32664966 mRNA hsa-miR-382 RALY miRanda miRanda
2192 chr8 110573134 110573134 1 + C G LUAD 110573140 + 110573120 110573160 41 AGAAGAAGATGCAGCCTGGCAAGCAGAAGAAGTTCTGAGGT AGAAGAAGATGCAGGCTGGCAAGCAGAAGAAGTTCTGAGGT < 41bp 1 0.59006985461695 1 0.332440942525864 experiment 0.819860290766101 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573140 chr8:110573134 nonsynonymous SNV 1.000 1 15 hm1A_associated_SNPs_2514 0 0 0 1 110573127 110573148 mRNA hsa-miR-544 EBAG9 miRanda miRanda
2192 chr11 65270045 65270045 1 + G A LUAD 65270026 + 65270006 65270046 41 GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTGA GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTAA < 41bp 1 0.173085967810399 1 0.165197312831879 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270026 chr11:65270045 . . 0 40 hm1A_associated_SNPs_2530 0 0 1 6 65270030 65270051 lncRNA hsa-miR-181a-5p MALAT1 miRanda starBase2
2192 chr11 65270045 65270045 1 + G A LUAD 65270026 + 65270006 65270046 41 GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTGA GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTAA < 41bp 1 0.173085967810399 1 0.165197312831879 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270026 chr11:65270045 . . 0 40 hm1A_associated_SNPs_2530 0 0 1 6 65270030 65270051 lncRNA hsa-miR-181b-5p MALAT1 miRanda starBase2
2192 chr11 65270045 65270045 1 + G A LUAD 65270026 + 65270006 65270046 41 GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTGA GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTAA < 41bp 1 0.173085967810399 1 0.165197312831879 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270026 chr11:65270045 . . 0 40 hm1A_associated_SNPs_2530 0 0 1 6 65270030 65270051 lncRNA hsa-miR-181c-5p MALAT1 miRanda starBase2
2192 chr11 65270045 65270045 1 + G A LUAD 65270026 + 65270006 65270046 41 GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTGA GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTAA < 41bp 1 0.173085967810399 1 0.165197312831879 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270026 chr11:65270045 . . 0 40 hm1A_associated_SNPs_2530 0 0 1 6 65270030 65270051 lncRNA hsa-miR-181d-5p MALAT1 miRanda starBase2
2192 chr11 65270045 65270045 1 + G A LUAD 65270026 + 65270006 65270046 41 GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTGA GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTAA < 41bp 1 0.173085967810399 1 0.165197312831879 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270026 chr11:65270045 . . 0 40 hm1A_associated_SNPs_2530 0 0 1 6 65270035 65270051 lncRNA hsa-miR-4262 MALAT1 miRanda starBase2
2192 chr11 65270045 65270045 1 + G A LUAD 65270026 + 65270006 65270046 41 GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTGA GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTAA < 41bp 1 0.173085967810399 1 0.165197312831879 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270026 chr11:65270045 . . 0 40 hm1A_associated_SNPs_2530 0 0 1 6 65270026 65270048 lncRNA hsa-miR-498 MALAT1 miRanda starBase2
2192 chr1 150039930 150039930 1 + G T LUAD 150039937 + 150039917 150039957 41 GAACGTGGTTTTTGCTGTGAAGCAGTACATTTCCAAAATGA GAACGTGGTTTTTTCTGTGAAGCAGTACATTTCCAAAATGA < 41bp 1 0.642651213163358 1 0.0417060554027557 experiment 0.714697573673285 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Glucose_starv_4h VPS45 ENSG00000136631 CDS Human protein_coding chr1:150039937 chr1:150039930 nonsynonymous SNV 1.000 1 14 hm1A_associated_SNPs_2574 0 0 1 1 150039915 150039937 mRNA hsa-miR-377 VPS45 miRanda miRanda
2192 chr11 65273348 65273348 1 + G C LUAD 65273351 + 65273331 65273371 41 ATGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCT ATGTAACTTGTAGACTGCAGAAGATAGGCATTTGAGTGGCT < 41bp 1 0.63399515831045 1 0.137309283018112 experiment 0.732009683379099 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273351 chr11:65273348 . . 0 18 hm1A_associated_SNPs_2581 0 0 1 3 65273341 65273365 lncRNA hsa-miR-105-5p MALAT1 miRanda starBase2
2192 chr11 65273348 65273348 1 + G C LUAD 65273351 + 65273331 65273371 41 ATGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCT ATGTAACTTGTAGACTGCAGAAGATAGGCATTTGAGTGGCT < 41bp 1 0.63399515831045 1 0.137309283018112 experiment 0.732009683379099 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273351 chr11:65273348 . . 0 18 hm1A_associated_SNPs_2581 0 0 1 3 65273345 65273365 lncRNA hsa-miR-7853-5p MALAT1 miRanda starBase2
2192 chr11 65273348 65273348 1 + G C LUAD 65273351 + 65273331 65273371 41 ATGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCT ATGTAACTTGTAGACTGCAGAAGATAGGCATTTGAGTGGCT < 41bp 1 0.63399515831045 1 0.137309283018112 experiment 0.732009683379099 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273351 chr11:65273348 . . 0 18 hm1A_associated_SNPs_2581 0 0 1 3 65273348 65273368 lncRNA hsa-miR-888-5p MALAT1 miRanda starBase2
2192 chr11 65273348 65273348 1 + G C LUAD 65273352 + 65273332 65273372 41 TGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCTG TGTAACTTGTAGACTGCAGAAGATAGGCATTTGAGTGGCTG < 41bp 1 0.643458999467283 1 0.206243067979813 experiment 0.713082001065434 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273352 chr11:65273348 . . 0 17 hm1A_associated_SNPs_2582 0 0 1 3 65273341 65273365 lncRNA hsa-miR-105-5p MALAT1 miRanda starBase2
2192 chr11 65273348 65273348 1 + G C LUAD 65273352 + 65273332 65273372 41 TGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCTG TGTAACTTGTAGACTGCAGAAGATAGGCATTTGAGTGGCTG < 41bp 1 0.643458999467283 1 0.206243067979813 experiment 0.713082001065434 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273352 chr11:65273348 . . 0 17 hm1A_associated_SNPs_2582 0 0 1 3 65273345 65273365 lncRNA hsa-miR-7853-5p MALAT1 miRanda starBase2
2192 chr11 65273348 65273348 1 + G C LUAD 65273352 + 65273332 65273372 41 TGTAACTTGTAGACTGGAGAAGATAGGCATTTGAGTGGCTG TGTAACTTGTAGACTGCAGAAGATAGGCATTTGAGTGGCTG < 41bp 1 0.643458999467283 1 0.206243067979813 experiment 0.713082001065434 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273352 chr11:65273348 . . 0 17 hm1A_associated_SNPs_2582 0 0 1 3 65273348 65273368 lncRNA hsa-miR-888-5p MALAT1 miRanda starBase2
2192 chr4 119200456 119200456 1 + G C LUSC 119200469 + 119200449 119200489 41 AGATTCTGACTTGCACAAGTAACATTCACTGTTAAAAACCT AGATTCTCACTTGCACAAGTAACATTCACTGTTAAAAACCT < 41bp 1 0.24215442191242 1 0.133219420909882 experiment 1 Functional Loss 29072297;GSE97420;m1A-seq;HEK293T;Control SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200469 chr4:119200456 . . 0 8 hm1A_associated_SNPs_2629 0 0 1 5 119200443 119200465 mRNA hsa-miR-19a SNORA24 miRanda miRanda
2192 chr4 119200456 119200456 1 + G C LUSC 119200469 + 119200449 119200489 41 AGATTCTGACTTGCACAAGTAACATTCACTGTTAAAAACCT AGATTCTCACTTGCACAAGTAACATTCACTGTTAAAAACCT < 41bp 1 0.24215442191242 1 0.133219420909882 experiment 1 Functional Loss 29072297;GSE97420;m1A-seq;HEK293T;Control SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200469 chr4:119200456 . . 0 8 hm1A_associated_SNPs_2629 0 0 1 5 119200443 119200465 mRNA hsa-miR-19b SNORA24 miRanda miRanda
2192 chr4 119200456 119200456 1 + G C LUSC 119200469 + 119200449 119200489 41 AGATTCTGACTTGCACAAGTAACATTCACTGTTAAAAACCT AGATTCTCACTTGCACAAGTAACATTCACTGTTAAAAACCT < 41bp 1 0.24215442191242 1 0.133219420909882 experiment 1 Functional Loss 29072297;GSE97420;m1A-seq;HEK293T;Control SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200469 chr4:119200456 . . 0 8 hm1A_associated_SNPs_2629 0 0 1 5 119200443 119200467 mRNA hsa-miR-182 SNORA24 miRanda miRanda
2192 chr4 119200456 119200456 1 + G C LUSC 119200469 + 119200449 119200489 41 AGATTCTGACTTGCACAAGTAACATTCACTGTTAAAAACCT AGATTCTCACTTGCACAAGTAACATTCACTGTTAAAAACCT < 41bp 1 0.24215442191242 1 0.133219420909882 experiment 1 Functional Loss 29072297;GSE97420;m1A-seq;HEK293T;Control SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200469 chr4:119200456 . . 0 8 hm1A_associated_SNPs_2629 0 0 1 5 119200440 119200461 mRNA hsa-miR-224 SNORA24 miRanda miRanda
2192 chr4 119200456 119200456 1 + G C LUSC 119200469 + 119200449 119200489 41 AGATTCTGACTTGCACAAGTAACATTCACTGTTAAAAACCT AGATTCTCACTTGCACAAGTAACATTCACTGTTAAAAACCT < 41bp 1 0.24215442191242 1 0.133219420909882 experiment 1 Functional Loss 29072297;GSE97420;m1A-seq;HEK293T;Control SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200469 chr4:119200456 . . 0 8 hm1A_associated_SNPs_2629 0 0 1 5 119200441 119200466 mRNA hsa-miR-454 SNORA24 miRanda miRanda
2192 chr11 65272663 65272663 1 + C T LUSC 65272681 + 65272661 65272701 41 CCCCTCACTAAAGGCACCGAAGGCTTAAAGTAGGACAACCA CCTCTCACTAAAGGCACCGAAGGCTTAAAGTAGGACAACCA < 41bp 1 0.282410867501949 1 0.211489617824554 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65272681 chr11:65272663 . . 0 3 hm1A_associated_SNPs_2639 0 0 1 3 65272646 65272667 lncRNA hsa-miR-1914-3p MALAT1 miRanda starBase2
2192 chr11 65272663 65272663 1 + C T LUSC 65272681 + 65272661 65272701 41 CCCCTCACTAAAGGCACCGAAGGCTTAAAGTAGGACAACCA CCTCTCACTAAAGGCACCGAAGGCTTAAAGTAGGACAACCA < 41bp 1 0.282410867501949 1 0.211489617824554 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65272681 chr11:65272663 . . 0 3 hm1A_associated_SNPs_2639 0 0 1 3 65272644 65272667 lncRNA hsa-miR-5194 MALAT1 miRanda starBase2
2192 chr11 65272663 65272663 1 + C T LUSC 65272681 + 65272661 65272701 41 CCCCTCACTAAAGGCACCGAAGGCTTAAAGTAGGACAACCA CCTCTCACTAAAGGCACCGAAGGCTTAAAGTAGGACAACCA < 41bp 1 0.282410867501949 1 0.211489617824554 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65272681 chr11:65272663 . . 0 3 hm1A_associated_SNPs_2639 0 0 1 3 65272642 65272667 lncRNA hsa-miR-6738-5p MALAT1 miRanda starBase2
2192 chr20 32664948 32664948 1 + C T LUSC 32664952 + 32664932 32664972 41 AGCCGGCCACCAGCCCCCCAAGAGAACACAACTTCTGAGGC AGCCGGCCACCAGCCCTCCAAGAGAACACAACTTCTGAGGC < 41bp 1 0.788357140701282 1 0.173075914382935 experiment 0.423285718597436 Functional Loss 26863196;GSE70486;m1A-seq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32664952 chr20:32664948 nonsynonymous SNV 0.161 3 17 hm1A_associated_SNPs_2666 0 0 1 1 32664941 32664966 mRNA hsa-miR-382 RALY miRanda miRanda
2192 chr6 32942522 32942522 1 + G T LUSC 32942503 + 32942483 32942523 41 AAACATCAGTTCGCATGGCCATTCCGGCAGCCTGTGGATGC AAACATCAGTTCGCATGGCCATTCCGGCAGCCTGTGGATTC < 41bp 1 0.786551031896529 1 0.987765192985535 experiment 0.426897936206941 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32942503 chr6:32942522 nonsynonymous SNV 0.997 4 40 hm1A_associated_SNPs_2668 0 0 1 1 32942522 32942542 mRNA hsa-miR-379 BRD2 miRanda miRanda
2192 chr20 57485817 57485817 1 + G A OV 57485804 + 57485784 57485824 41 ATTTCACCTGCGCTGTGGACACTGAGAACATCCGCCGTGTG ATTTCACCTGCGCTGTGGACACTGAGAACATCCACCGTGTG < 41bp 1 0.394024749959251 1 0.494915366172791 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485804 chr20:57485817 nonsynonymous SNV 1.000 4 34 hm1A_associated_SNPs_2797 0 0 1 1 57485796 57485817 mRNA hsa-miR-876-5p GNAS miRanda miRanda
2192 chr11 65273638 65273638 1 + C T OV 65273630 + 65273610 65273650 41 GGTTTCCAGGACGGGGTTCAAATCCCTGCGGCGTCTTTGCT GGTTTCCAGGACGGGGTTCAAATCCCTGTGGCGTCTTTGCT < 41bp 1 0.656411147508878 1 0.94530975818634 experiment 0.687177704982245 Functional Loss 29072297;GSE97420;m1A-seq;HEK293T;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273630 chr11:65273638 . . 0 29 hm1A_associated_SNPs_2809 0 0 1 1 65273632 65273654 lncRNA hsa-miR-330-3p MALAT1 miRanda starBase2
2192 chr11 65270267 65270267 1 + C G OV 65270275 + 65270255 65270295 41 AGATTCTTACTACTGATGAGAACATTATCTGCATATGCCAA AGATTCTTACTAGTGATGAGAACATTATCTGCATATGCCAA < 41bp 1 0.112330727081925 1 0.0355630815029144 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270275 chr11:65270267 . 0.977 0 13 hm1A_associated_SNPs_2833 0 0 1 3 65270249 65270270 lncRNA hsa-miR-199a-3p MALAT1 miRanda starBase2
2192 chr11 65270267 65270267 1 + C G OV 65270275 + 65270255 65270295 41 AGATTCTTACTACTGATGAGAACATTATCTGCATATGCCAA AGATTCTTACTAGTGATGAGAACATTATCTGCATATGCCAA < 41bp 1 0.112330727081925 1 0.0355630815029144 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270275 chr11:65270267 . 0.977 0 13 hm1A_associated_SNPs_2833 0 0 1 3 65270249 65270270 lncRNA hsa-miR-199b-3p MALAT1 miRanda starBase2
2192 chr11 65270267 65270267 1 + C G OV 65270275 + 65270255 65270295 41 AGATTCTTACTACTGATGAGAACATTATCTGCATATGCCAA AGATTCTTACTAGTGATGAGAACATTATCTGCATATGCCAA < 41bp 1 0.112330727081925 1 0.0355630815029144 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270275 chr11:65270267 . 0.977 0 13 hm1A_associated_SNPs_2833 0 0 1 3 65270250 65270270 lncRNA hsa-miR-3129-5p MALAT1 miRanda starBase2
2192 chr5 7870920 7870920 1 + C A OV 7870908 + 7870888 7870928 41 CTGTTACATGCCTTGAAGTGATGAGGAGGTTTCTGTTACTA CTGTTACATGCCTTGAAGTGATGAGGAGGTTTATGTTACTA < 41bp 1 0.579587430390103 1 0.123739004135132 experiment 0.840825139219793 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7870908 chr5:7870920 nonsynonymous SNV 0.971 3 33 hm1A_associated_SNPs_2849 0 0 1 2 7870905 7870927 mRNA hsa-miR-194 MTRR miRanda miRanda
2192 chr5 7870920 7870920 1 + C A OV 7870908 + 7870888 7870928 41 CTGTTACATGCCTTGAAGTGATGAGGAGGTTTCTGTTACTA CTGTTACATGCCTTGAAGTGATGAGGAGGTTTATGTTACTA < 41bp 1 0.579587430390103 1 0.123739004135132 experiment 0.840825139219793 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7870908 chr5:7870920 nonsynonymous SNV 0.971 3 33 hm1A_associated_SNPs_2849 0 0 1 2 7870909 7870930 mRNA hsa-miR-410 MTRR miRanda miRanda
2192 chr11 65268687 65268687 1 + T G OV 65268685 + 65268665 65268705 41 GTGTAACTGAGGCGGGGGGGAGTTTTCAGTATTTTTTTTTG GTGTAACTGAGGCGGGGGGGAGGTTTCAGTATTTTTTTTTG < 41bp 1 0.0985823264040039 1 0.10510128736496 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268685 chr11:65268687 . . 0 23 hm1A_associated_SNPs_2850 0 0 1 3 65268677 65268698 lncRNA hsa-miR-200b-3p MALAT1 miRanda starBase2
2192 chr11 65268687 65268687 1 + T G OV 65268685 + 65268665 65268705 41 GTGTAACTGAGGCGGGGGGGAGTTTTCAGTATTTTTTTTTG GTGTAACTGAGGCGGGGGGGAGGTTTCAGTATTTTTTTTTG < 41bp 1 0.0985823264040039 1 0.10510128736496 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268685 chr11:65268687 . . 0 23 hm1A_associated_SNPs_2850 0 0 1 3 65268676 65268698 lncRNA hsa-miR-200c-3p MALAT1 miRanda starBase2
2192 chr11 65268687 65268687 1 + T G OV 65268685 + 65268665 65268705 41 GTGTAACTGAGGCGGGGGGGAGTTTTCAGTATTTTTTTTTG GTGTAACTGAGGCGGGGGGGAGGTTTCAGTATTTTTTTTTG < 41bp 1 0.0985823264040039 1 0.10510128736496 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268685 chr11:65268687 . . 0 23 hm1A_associated_SNPs_2850 0 0 1 3 65268677 65268698 lncRNA hsa-miR-429 MALAT1 miRanda starBase2
2192 chr14 105944655 105944655 1 + C T PAAD 105944650 + 105944630 105944670 41 ACTGGCACAAGTTCTGCCTCAAGTGCGAGCGCTGCAGCAAG ACTGGCACAAGTTCTGCCTCAAGTGTGAGCGCTGCAGCAAG < 41bp 1 0.600510784913645 1 0.261286497116089 experiment 0.79897843017271 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control CRIP2 ENSG00000182809 CDS Human protein_coding chr14:105944650 chr14:105944655 synonymous SNV . 0 26 hm1A_associated_SNPs_2895 0 0 1 1 105944651 105944673 mRNA hsa-miR-431 CRIP2 miRanda miRanda
2192 chr2 27599549 27599549 1 + A G PRAD 27599561 + 27599541 27599581 41 CCACGGCAATTTCGCCTTCGAGGGCATTGGAGATGAGGATC CCACGGCAGTTTCGCCTTCGAGGGCATTGGAGATGAGGATC < 41bp 1 0.792736470511212 1 0.202669829130173 experiment 0.414527058977577 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control SNX17 ENSG00000115234 CDS Human protein_coding chr2:27599561 chr2:27599549 nonsynonymous SNV 1.000 4 9 hm1A_associated_SNPs_2913 0 0 1 1 27599548 27599569 mRNA hsa-miR-365 SNX17 miRanda miRanda
2192 chr11 65270044 65270044 1 + T A PRAD 65270026 + 65270006 65270046 41 GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTGA GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTAGA < 41bp 1 0.208864747285582 1 0.191307067871094 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270026 chr11:65270044 . . 0 39 hm1A_associated_SNPs_2915 0 0 1 6 65270030 65270051 lncRNA hsa-miR-181a-5p MALAT1 miRanda starBase2
2192 chr11 65270044 65270044 1 + T A PRAD 65270026 + 65270006 65270046 41 GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTGA GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTAGA < 41bp 1 0.208864747285582 1 0.191307067871094 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270026 chr11:65270044 . . 0 39 hm1A_associated_SNPs_2915 0 0 1 6 65270030 65270051 lncRNA hsa-miR-181b-5p MALAT1 miRanda starBase2
2192 chr11 65270044 65270044 1 + T A PRAD 65270026 + 65270006 65270046 41 GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTGA GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTAGA < 41bp 1 0.208864747285582 1 0.191307067871094 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270026 chr11:65270044 . . 0 39 hm1A_associated_SNPs_2915 0 0 1 6 65270030 65270051 lncRNA hsa-miR-181c-5p MALAT1 miRanda starBase2
2192 chr11 65270044 65270044 1 + T A PRAD 65270026 + 65270006 65270046 41 GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTGA GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTAGA < 41bp 1 0.208864747285582 1 0.191307067871094 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270026 chr11:65270044 . . 0 39 hm1A_associated_SNPs_2915 0 0 1 6 65270030 65270051 lncRNA hsa-miR-181d-5p MALAT1 miRanda starBase2
2192 chr11 65270044 65270044 1 + T A PRAD 65270026 + 65270006 65270046 41 GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTGA GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTAGA < 41bp 1 0.208864747285582 1 0.191307067871094 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270026 chr11:65270044 . . 0 39 hm1A_associated_SNPs_2915 0 0 1 6 65270035 65270051 lncRNA hsa-miR-4262 MALAT1 miRanda starBase2
2192 chr11 65270044 65270044 1 + T A PRAD 65270026 + 65270006 65270046 41 GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTGA GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTAGA < 41bp 1 0.208864747285582 1 0.191307067871094 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270026 chr11:65270044 . . 0 39 hm1A_associated_SNPs_2915 0 0 1 6 65270026 65270048 lncRNA hsa-miR-498 MALAT1 miRanda starBase2
2192 chr16 21416285 21416285 1 + A G PRAD 21416300 + 21416280 21416320 41 CACTCAGGAGGTGTCTTGAGATTATCATCCGCTGAGGGTGG CACTCGGGAGGTGTCTTGAGATTATCATCCGCTGAGGGTGG < 41bp 1 0.717888840901588 1 0.185510218143463 experiment 0.564222318196824 Functional Loss 26863196;GSE70486;m1A-seq;HEK293;Control NPIPB3 ENSG00000169246 CDS Human protein_coding chr16:21416300 chr16:21416285 synonymous SNV . 0 6 hm1A_associated_SNPs_2939 0 0 0 1 21416284 21416303 mRNA hsa-miR-216a NPIPL3 miRanda miRanda
2192 chr16 778853 778853 1 + G T SARC 778846 + 778826 778866 41 CAACCTGGAGTTTGCCCAGAAAGTGGAGCCCTGCAACGACC CAACCTGGAGTTTGCCCAGAAAGTGGATCCCTGCAACGACC < 41bp 1 0.349715246631748 1 0.145012885332108 experiment 1 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control HAGHL ENSG00000103253 CDS Human protein_coding chr16:778846 chr16:778853 nonsynonymous SNV 0.898 4 28 hm1A_associated_SNPs_3002 0 0 1 1 778845 778866 mRNA hsa-miR-431 HAGHL miRanda miRanda
2192 chr11 65270721 65270721 1 + G T SARC 65270728 + 65270708 65270748 41 CTTATTTTTAAGAGCTGTGGAGTTCTTAAATATCAACCATG CTTATTTTTAAGATCTGTGGAGTTCTTAAATATCAACCATG < 41bp 1 0.208996264541053 1 0.0292015373706818 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270728 chr11:65270721 . . 0 14 hm1A_associated_SNPs_3025 0 0 1 1 65270720 65270742 lncRNA hsa-miR-3145-3p MALAT1 miRanda starBase2
2192 chr8 110573152 110573152 1 + T G SARC 110573140 + 110573120 110573160 41 AGAAGAAGATGCAGCCTGGCAAGCAGAAGAAGTTCTGAGGT AGAAGAAGATGCAGCCTGGCAAGCAGAAGAAGGTCTGAGGT < 41bp 1 0.575392877723799 1 0.42762964963913 experiment 0.849214244552402 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573140 chr8:110573152 nonsynonymous SNV 0.998 4 33 hm1A_associated_SNPs_3042 0 0 0 2 110573135 110573157 mRNA hsa-miR-146a EBAG9 miRanda miRanda
2192 chr8 110573152 110573152 1 + T G SARC 110573140 + 110573120 110573160 41 AGAAGAAGATGCAGCCTGGCAAGCAGAAGAAGTTCTGAGGT AGAAGAAGATGCAGCCTGGCAAGCAGAAGAAGGTCTGAGGT < 41bp 1 0.575392877723799 1 0.42762964963913 experiment 0.849214244552402 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573140 chr8:110573152 nonsynonymous SNV 0.998 4 33 hm1A_associated_SNPs_3042 0 0 0 2 110573136 110573157 mRNA hsa-miR-146b-5p EBAG9 miRanda miRanda
2192 chr7 75933416 75933416 1 + C T SKCM 75933410 + 75933390 75933430 41 CCACGCAGTCCAACGAGATCACCATCCCAGTCACCTTCGAG CCACGCAGTCCAACGAGATCACCATCTCAGTCACCTTCGAG < 41bp 1 0.661974256042563 1 0.86493182182312 experiment 0.676051487914874 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933410 chr7:75933416 nonsynonymous SNV 0.122 5 27 hm1A_associated_SNPs_3073 1 0 1 1 75933403 75933424 mRNA hsa-miR-134 HSPB1 miRanda miRanda
2192 chr7 75933408 75933408 1 + T A SKCM 75933410 + 75933390 75933430 41 CCACGCAGTCCAACGAGATCACCATCCCAGTCACCTTCGAG CCACGCAGTCCAACGAGAACACCATCCCAGTCACCTTCGAG < 41bp 1 0.678143894826594 1 0.718877732753754 experiment 0.643712210346812 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933410 chr7:75933408 nonsynonymous SNV 0.541 5 19 hm1A_associated_SNPs_3189 0 0 0 1 75933403 75933424 mRNA hsa-miR-134 HSPB1 miRanda miRanda
2192 chr8 110573133 110573133 1 + G C SKCM 110573140 + 110573120 110573160 41 AGAAGAAGATGCAGCCTGGCAAGCAGAAGAAGTTCTGAGGT AGAAGAAGATGCACCCTGGCAAGCAGAAGAAGTTCTGAGGT < 41bp 1 0.492028400137713 1 0.13738888502121 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573140 chr8:110573133 nonsynonymous SNV 1.000 2 14 hm1A_associated_SNPs_3243 0 0 0 1 110573127 110573148 mRNA hsa-miR-544 EBAG9 miRanda miRanda
2192 chr6 42848679 42848679 1 + A T SKCM 42848663 + 42848643 42848683 41 GGAAGGCTTATCAAGCCCTCAAAGCCACCCAGGCAAAGCAG GGAAGGCTTATCAAGCCCTCAAAGCCACCCAGGCAATGCAG < 41bp 1 0.605958184270786 1 0.143272638320923 experiment 0.788083631458427 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control|26863196;GSE70487;m1A-seq;HeLa;Control RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42848663 chr6:42848679 nonsynonymous SNV 1.000 4 37 hm1A_associated_SNPs_3275 0 0 1 7 42848669 42848691 mRNA hsa-miR-17 RPL7L1 miRanda miRanda
2192 chr6 42848679 42848679 1 + A T SKCM 42848663 + 42848643 42848683 41 GGAAGGCTTATCAAGCCCTCAAAGCCACCCAGGCAAAGCAG GGAAGGCTTATCAAGCCCTCAAAGCCACCCAGGCAATGCAG < 41bp 1 0.605958184270786 1 0.143272638320923 experiment 0.788083631458427 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control|26863196;GSE70487;m1A-seq;HeLa;Control RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42848663 chr6:42848679 nonsynonymous SNV 1.000 4 37 hm1A_associated_SNPs_3275 0 0 1 7 42848669 42848691 mRNA hsa-miR-20a RPL7L1 miRanda miRanda
2192 chr6 42848679 42848679 1 + A T SKCM 42848663 + 42848643 42848683 41 GGAAGGCTTATCAAGCCCTCAAAGCCACCCAGGCAAAGCAG GGAAGGCTTATCAAGCCCTCAAAGCCACCCAGGCAATGCAG < 41bp 1 0.605958184270786 1 0.143272638320923 experiment 0.788083631458427 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control|26863196;GSE70487;m1A-seq;HeLa;Control RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42848663 chr6:42848679 nonsynonymous SNV 1.000 4 37 hm1A_associated_SNPs_3275 0 0 1 7 42848667 42848691 mRNA hsa-miR-93 RPL7L1 miRanda miRanda
2192 chr6 42848679 42848679 1 + A T SKCM 42848663 + 42848643 42848683 41 GGAAGGCTTATCAAGCCCTCAAAGCCACCCAGGCAAAGCAG GGAAGGCTTATCAAGCCCTCAAAGCCACCCAGGCAATGCAG < 41bp 1 0.605958184270786 1 0.143272638320923 experiment 0.788083631458427 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control|26863196;GSE70487;m1A-seq;HeLa;Control RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42848663 chr6:42848679 nonsynonymous SNV 1.000 4 37 hm1A_associated_SNPs_3275 0 0 1 7 42848669 42848691 mRNA hsa-miR-106a RPL7L1 miRanda miRanda
2192 chr6 42848679 42848679 1 + A T SKCM 42848663 + 42848643 42848683 41 GGAAGGCTTATCAAGCCCTCAAAGCCACCCAGGCAAAGCAG GGAAGGCTTATCAAGCCCTCAAAGCCACCCAGGCAATGCAG < 41bp 1 0.605958184270786 1 0.143272638320923 experiment 0.788083631458427 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control|26863196;GSE70487;m1A-seq;HeLa;Control RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42848663 chr6:42848679 nonsynonymous SNV 1.000 4 37 hm1A_associated_SNPs_3275 0 0 1 7 42848671 42848691 mRNA hsa-miR-106b RPL7L1 miRanda miRanda
2192 chr6 42848679 42848679 1 + A T SKCM 42848663 + 42848643 42848683 41 GGAAGGCTTATCAAGCCCTCAAAGCCACCCAGGCAAAGCAG GGAAGGCTTATCAAGCCCTCAAAGCCACCCAGGCAATGCAG < 41bp 1 0.605958184270786 1 0.143272638320923 experiment 0.788083631458427 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control|26863196;GSE70487;m1A-seq;HeLa;Control RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42848663 chr6:42848679 nonsynonymous SNV 1.000 4 37 hm1A_associated_SNPs_3275 0 0 1 7 42848669 42848691 mRNA hsa-miR-20b RPL7L1 miRanda miRanda
2192 chr6 42848679 42848679 1 + A T SKCM 42848663 + 42848643 42848683 41 GGAAGGCTTATCAAGCCCTCAAAGCCACCCAGGCAAAGCAG GGAAGGCTTATCAAGCCCTCAAAGCCACCCAGGCAATGCAG < 41bp 1 0.605958184270786 1 0.143272638320923 experiment 0.788083631458427 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control|26863196;GSE70487;m1A-seq;HeLa;Control RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42848663 chr6:42848679 nonsynonymous SNV 1.000 4 37 hm1A_associated_SNPs_3275 0 0 1 7 42848670 42848691 mRNA hsa-miR-519d RPL7L1 miRanda miRanda
2192 chr20 57480491 57480491 1 + C A SKCM 57480505 + 57480485 57480525 41 TGCCTGCTACGAACGCTCCAACGAGTACCAGCTGATTGACT TGCCTGATACGAACGCTCCAACGAGTACCAGCTGATTGACT < 41bp 1 0.476431123995824 1 0.230206906795502 experiment 1 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480505 chr20:57480491 stopgain 0.987 1 7 hm1A_associated_SNPs_3292 0 0 1 2 57480471 57480493 mRNA hsa-miR-15a GNAS miRanda miRanda
2192 chr20 57480491 57480491 1 + C A SKCM 57480505 + 57480485 57480525 41 TGCCTGCTACGAACGCTCCAACGAGTACCAGCTGATTGACT TGCCTGATACGAACGCTCCAACGAGTACCAGCTGATTGACT < 41bp 1 0.476431123995824 1 0.230206906795502 experiment 1 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480505 chr20:57480491 stopgain 0.987 1 7 hm1A_associated_SNPs_3292 0 0 1 2 57480471 57480493 mRNA hsa-miR-16 GNAS miRanda miRanda
2192 chr19 7986621 7986621 1 + G A SKCM 7986633 + 7986613 7986653 41 GATAACAGGGCCACTGGAAGAAGCCCTGGCAGTGGCTTTCT GATAACAGAGCCACTGGAAGAAGCCCTGGCAGTGGCTTTCT < 41bp 1 0.379147379697725 1 0.242816239595413 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Glucose_starv_4h SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986633 chr19:7986621 nonsynonymous SNV 0.952 2 9 hm1A_associated_SNPs_3311 0 0 1 1 7986607 7986626 mRNA hsa-miR-328 SNAPC2 miRanda miRanda
2192 chr9 140059743 140059743 1 + G A SKCM 140059742 + 140059722 140059762 41 AAGAGGCGTAGGTCCTCCAAAGACACGGTAAGGGGGAGAGC AAGAGGCGTAGGTCCTCCAAAAACACGGTAAGGGGGAGAGC < 41bp 1 0.508645728155375 1 0.177944451570511 experiment 0.98270854368925 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140059742 chr9:140059743 nonsynonymous SNV 1.000 1 22 hm1A_associated_SNPs_3320 0 0 0 1 140059729 140059749 mRNA hsa-miR-187 GRIN1 miRanda miRanda
2192 chr19 45563679 45563679 1 + C T SKCM 45563659 + 45563639 45563679 41 CTCTATAGGATGCTCCGGAAAGACAAGGAGGAGGCAGAGGC CTCTATAGGATGCTCCGGAAAGACAAGGAGGAGGCAGAGGT < 41bp 1 0.428165498759893 1 0.782194137573242 experiment 1 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control CLASRP ENSG00000104859 CDS Human protein_coding chr19:45563659 chr19:45563679 nonsynonymous SNV 0.998 2 41 hm1A_associated_SNPs_3339 0 0 1 1 45563659 45563682 mRNA hsa-miR-328 SFRS16 miRanda miRanda
2192 chr11 65272664 65272664 1 + C T SKCM 65272681 + 65272661 65272701 41 CCCCTCACTAAAGGCACCGAAGGCTTAAAGTAGGACAACCA CCCTTCACTAAAGGCACCGAAGGCTTAAAGTAGGACAACCA < 41bp 1 0.296057614287322 1 0.24297696352005 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65272681 chr11:65272664 . . 0 4 hm1A_associated_SNPs_3341 0 0 1 3 65272646 65272667 lncRNA hsa-miR-1914-3p MALAT1 miRanda starBase2
2192 chr11 65272664 65272664 1 + C T SKCM 65272681 + 65272661 65272701 41 CCCCTCACTAAAGGCACCGAAGGCTTAAAGTAGGACAACCA CCCTTCACTAAAGGCACCGAAGGCTTAAAGTAGGACAACCA < 41bp 1 0.296057614287322 1 0.24297696352005 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65272681 chr11:65272664 . . 0 4 hm1A_associated_SNPs_3341 0 0 1 3 65272644 65272667 lncRNA hsa-miR-5194 MALAT1 miRanda starBase2
2192 chr11 65272664 65272664 1 + C T SKCM 65272681 + 65272661 65272701 41 CCCCTCACTAAAGGCACCGAAGGCTTAAAGTAGGACAACCA CCCTTCACTAAAGGCACCGAAGGCTTAAAGTAGGACAACCA < 41bp 1 0.296057614287322 1 0.24297696352005 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65272681 chr11:65272664 . . 0 4 hm1A_associated_SNPs_3341 0 0 1 3 65272642 65272667 lncRNA hsa-miR-6738-5p MALAT1 miRanda starBase2
2192 chr9 140059732 140059732 1 + G T STAD 140059742 + 140059722 140059762 41 AAGAGGCGTAGGTCCTCCAAAGACACGGTAAGGGGGAGAGC AAGAGGCGTATGTCCTCCAAAGACACGGTAAGGGGGAGAGC < 41bp 1 0.457085748429563 1 0.156412303447723 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140059742 chr9:140059732 nonsynonymous SNV 1.000 3 11 hm1A_associated_SNPs_3375 0 0 0 1 140059729 140059749 mRNA hsa-miR-187 GRIN1 miRanda miRanda
2192 chr12 8866509 8866509 1 + G A STAD 8866521 + 8866501 8866541 41 AGATCGTCGCATCAGGGAAGACTATCCTCAAAAAGAGATTT AGATCGTCACATCAGGGAAGACTATCCTCAAAAAGAGATTT < 41bp 1 0.658775777321693 1 0.741293847560883 experiment 0.682448445356614 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock|26863196;GSE70485;m1A-seq;HepG2;Control RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8866521 chr12:8866509 nonsynonymous SNV 1.000 0 9 hm1A_associated_SNPs_3380 0 0 1 1 8866508 8866530 mRNA hsa-let-7i RIMKLB miRanda miRanda
2192 chr2 217366124 217366124 1 + G A STAD 217366108 + 217366088 217366128 41 GTCCGCCATCAGAAGACTGAAGGAGTTGAAAGACCAGTAGA GTCCGCCATCAGAAGACTGAAGGAGTTGAAAGACCAATAGA < 41bp 1 0.664440742618852 1 0.761994600296021 experiment 0.671118514762296 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217366108 chr2:217366124 synonymous SNV . 0 37 hm1A_associated_SNPs_3391 0 0 1 1 217366112 217366136 mRNA hsa-miR-28-5p RPL37A miRanda miRanda
2192 chr2 217366124 217366124 1 + G A STAD 217366111 + 217366091 217366131 41 CGCCATCAGAAGACTGAAGGAGTTGAAAGACCAGTAGACGC CGCCATCAGAAGACTGAAGGAGTTGAAAGACCAATAGACGC < 41bp 1 0.713571482961186 1 0.739043056964874 experiment 0.572857034077628 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217366111 chr2:217366124 synonymous SNV . 0 34 hm1A_associated_SNPs_3392 0 0 1 1 217366112 217366136 mRNA hsa-miR-28-5p RPL37A miRanda miRanda
2192 chr2 217366124 217366124 1 + G A STAD 217366117 + 217366097 217366137 41 CAGAAGACTGAAGGAGTTGAAAGACCAGTAGACGCTCCTCT CAGAAGACTGAAGGAGTTGAAAGACCAATAGACGCTCCTCT < 41bp 1 0.702831508193276 1 0.186467170715332 experiment 0.594336983613449 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217366117 chr2:217366124 synonymous SNV . 0 28 hm1A_associated_SNPs_3393 0 0 1 1 217366112 217366136 mRNA hsa-miR-28-5p RPL37A miRanda miRanda
2192 chr12 8866566 8866566 1 + G T STAD 8866549 + 8866529 8866569 41 CAAAAAGAGATTTTACGAGCATTGAAGGCCAAATGTTGTGA CAAAAAGAGATTTTACGAGCATTGAAGGCCAAATGTTTTGA < 41bp 1 0.693824789416718 1 0.760068535804749 experiment 0.612350421166564 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8866549 chr12:8866566 nonsynonymous SNV 1.000 0 38 hm1A_associated_SNPs_3405 0 0 1 1 8866557 8866582 mRNA hsa-miR-145 RIMKLB miRanda miRanda
2192 chr12 69992114 69992114 1 + A G STAD 69992124 + 69992104 69992144 41 GCCAACCATCATAGCTGACAATGCAGGCTATGACAGTGCAG GCCAACCATCGTAGCTGACAATGCAGGCTATGACAGTGCAG < 41bp 1 0.769130492206625 1 0.675373315811157 experiment 0.461739015586751 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control CCT2 ENSG00000166226 CDS Human protein_coding chr12:69992124 chr12:69992114 nonsynonymous SNV 0.999 2 11 hm1A_associated_SNPs_3423 0 0 1 2 69992108 69992129 mRNA hsa-miR-33a CCT2 miRanda miRanda
2192 chr12 69992114 69992114 1 + A G STAD 69992124 + 69992104 69992144 41 GCCAACCATCATAGCTGACAATGCAGGCTATGACAGTGCAG GCCAACCATCGTAGCTGACAATGCAGGCTATGACAGTGCAG < 41bp 1 0.769130492206625 1 0.675373315811157 experiment 0.461739015586751 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control CCT2 ENSG00000166226 CDS Human protein_coding chr12:69992124 chr12:69992114 nonsynonymous SNV 0.999 2 11 hm1A_associated_SNPs_3423 0 0 1 2 69992109 69992129 mRNA hsa-miR-33b CCT2 miRanda miRanda
2192 chr19 39973790 39973790 1 + G A STAD 39973791 + 39973771 39973811 41 CCAGATTCCTGATGAGTTCGACAATGGTGAGTAAACAAGCA CCAGATTCCTGATGAGTTCAACAATGGTGAGTAAACAAGCA < 41bp 1 0.504169028630402 1 0.109970211982727 experiment 0.991661942739197 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control TIMM50 ENSG00000105197 CDS Human protein_coding chr19:39973791 chr19:39973790 nonsynonymous SNV 0.993 1 20 hm1A_associated_SNPs_3432 0 0 1 1 39973790 39973796 mRNA hsa-miR-138 TIMM50 miRanda miRanda
2192 chr15 92459421 92459421 1 + G A STAD 92459422 + 92459402 92459442 41 GCTGCTGTCGGCGCTGCCCGAGTTCCTGACCCACCAGTACA GCTGCTGTCGGCGCTGCCCAAGTTCCTGACCCACCAGTACA < 41bp 1 0.578229271809533 1 0.906219482421875 experiment 0.843541456380934 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92459422 chr15:92459421 nonsynonymous SNV 0.973 4 20 hm1A_associated_SNPs_3447 0 0 1 1 92459409 92459430 mRNA hsa-miR-873 SLCO3A1 miRanda miRanda
2192 chr20 57485796 57485796 1 + C A STAD 57485804 + 57485784 57485824 41 ATTTCACCTGCGCTGTGGACACTGAGAACATCCGCCGTGTG ATTTCACCTGCGATGTGGACACTGAGAACATCCGCCGTGTG < 41bp 1 0.350360516137285 1 0.498943358659744 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485804 chr20:57485796 nonsynonymous SNV 0.999 5 13 hm1A_associated_SNPs_3455 0 0 1 1 57485796 57485817 mRNA hsa-miR-876-5p GNAS miRanda miRanda
2192 chr11 65270819 65270819 1 + T A STAD 65270826 + 65270806 65270846 41 AGCCTTTTTAAAATTGTAGGACTTGTTCCTGTGGGCTTCAG AGCCTTTTTAAAAATGTAGGACTTGTTCCTGTGGGCTTCAG < 41bp 1 0.147247455922032 1 0.0995186269283295 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270826 chr11:65270819 . . 0 14 hm1A_associated_SNPs_3477 0 0 1 1 65270817 65270837 lncRNA hsa-miR-873-5p MALAT1 miRanda starBase2
2192 chr10 102766799 102766799 1 + C T STAD 102766789 + 102766769 102766809 41 GCACAACTACATCCAGATGTACCGGCGCAACCGGCAGCTAG GCACAACTACATCCAGATGTACCGGCGCAATCGGCAGCTAG < 41bp 1 0.183355249455094 1 0.329124957323074 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102766789 chr10:102766799 synonymous SNV . 0 31 hm1A_associated_SNPs_3547 0 0 1 1 102766787 102766808 mRNA hsa-miR-22 LZTS2 miRanda miRanda
2192 chr6 32943277 32943277 1 + C T STAD 32943269 + 32943249 32943289 41 GTATGCAAGATTTTAATACCATGTTCACCAACTGTTACATT GTATGCAAGATTTTAATACCATGTTCACTAACTGTTACATT < 41bp 1 0.714582743379864 1 0.997258901596069 experiment 0.570834513240271 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32943269 chr6:32943277 synonymous SNV . 0 29 hm1A_associated_SNPs_3570 0 0 1 1 32943266 32943287 mRNA hsa-miR-194 BRD2 miRanda miRanda
2192 chr20 60963386 60963386 1 + C A UCEC 60963398 + 60963378 60963418 41 ATTCCATTCTCCGATTGGCCAAGGCCGATGGCATCGTCTCA ATTCCATTATCCGATTGGCCAAGGCCGATGGCATCGTCTCA < 41bp 1 0.748669632172138 1 0.233212053775787 experiment 0.502660735655723 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 CDS Human protein_coding chr20:60963398 chr20:60963386 nonsynonymous SNV 0.994 0 9 hm1A_associated_SNPs_3625 0 0 1 1 60963376 60963400 mRNA hsa-miR-182 RPS21 miRanda miRanda
2192 chr15 89020250 89020250 1 + C T UCEC 89020252 + 89020232 89020272 41 AAGGGCGTGATCCACATCCGAGTTGTGGTGAAAGGCCTGGG AAGGGCGTGATCCACATCTGAGTTGTGGTGAAAGGCCTGGG < 41bp 1 0.614513071078816 1 0.273499250411987 experiment 0.770973857842368 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89020252 chr15:89020250 stopgain 0.948 1 19 hm1A_associated_SNPs_3640 0 0 1 1 89020242 89020263 mRNA hsa-miR-197 MRPS11 miRanda miRanda
2192 chr7 158672528 158672528 1 + G T UCEC 158672533 + 158672513 158672553 41 GAGAAATATTCCAAAGAGAAAAGTAATTCATTCTCTGACAA GAGAAATATTCCAAATAGAAAAGTAATTCATTCTCTGACAA < 41bp 1 0.150825322189409 1 0.151217758655548 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Glucose_starv_4h WDR60 ENSG00000126870 CDS Human protein_coding chr7:158672533 chr7:158672528 stopgain 0.009 1 16 hm1A_associated_SNPs_3651 0 0 1 1 158672527 158672548 mRNA hsa-miR-143 WDR60 miRanda miRanda
2192 chr11 65267975 65267975 1 + G T UCEC 65267956 + 65267936 65267976 41 GTTTGATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGC GTTTGATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCATC < 41bp 1 0.224787594187458 1 0.173726081848145 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267956 chr11:65267975 . . 0 40 hm1A_associated_SNPs_3679 0 0 1 1 65267968 65267989 lncRNA hsa-miR-197-3p MALAT1 miRanda starBase2
2192 chr20 57485816 57485816 1 + C T UCEC 57485804 + 57485784 57485824 41 ATTTCACCTGCGCTGTGGACACTGAGAACATCCGCCGTGTG ATTTCACCTGCGCTGTGGACACTGAGAACATCTGCCGTGTG < 41bp 1 0.36950886098699 1 0.479536145925522 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485804 chr20:57485816 nonsynonymous SNV 1.000 5 33 hm1A_associated_SNPs_3693 0 0 1 1 57485796 57485817 mRNA hsa-miR-876-5p GNAS miRanda miRanda
2192 chr20 57485110 57485110 1 + T G UCEC 57485098 + 57485078 57485118 41 GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCTCGCT GAAATCGAAGATTGAGGACTACTTTCCAGAATGTGCTCGCT < 41bp 1 0.314868352608478 1 0.173289000988007 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485098 chr20:57485110 nonsynonymous SNV 0.991 5 33 hm1A_associated_SNPs_3746 0 0 1 4 57485097 57485119 mRNA hsa-miR-15a GNAS miRanda miRanda
2192 chr20 57485110 57485110 1 + T G UCEC 57485098 + 57485078 57485118 41 GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCTCGCT GAAATCGAAGATTGAGGACTACTTTCCAGAATGTGCTCGCT < 41bp 1 0.314868352608478 1 0.173289000988007 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485098 chr20:57485110 nonsynonymous SNV 0.991 5 33 hm1A_associated_SNPs_3746 0 0 1 4 57485097 57485119 mRNA hsa-miR-15b GNAS miRanda miRanda
2192 chr20 57485110 57485110 1 + T G UCEC 57485098 + 57485078 57485118 41 GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCTCGCT GAAATCGAAGATTGAGGACTACTTTCCAGAATGTGCTCGCT < 41bp 1 0.314868352608478 1 0.173289000988007 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485098 chr20:57485110 nonsynonymous SNV 0.991 5 33 hm1A_associated_SNPs_3746 0 0 1 4 57485104 57485126 mRNA hsa-miR-142-3p GNAS miRanda miRanda
2192 chr20 57485110 57485110 1 + T G UCEC 57485098 + 57485078 57485118 41 GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCTCGCT GAAATCGAAGATTGAGGACTACTTTCCAGAATGTGCTCGCT < 41bp 1 0.314868352608478 1 0.173289000988007 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485098 chr20:57485110 nonsynonymous SNV 0.991 5 33 hm1A_associated_SNPs_3746 0 0 1 4 57485098 57485119 mRNA hsa-miR-497 GNAS miRanda miRanda
2192 chr1 161198282 161198282 1 + G A UCEC 161198268 + 161198248 161198288 41 GATCAGGCGGGGCCCATGCAAGTTACTACCACAGGGCAAAT GATCAGGCGGGGCCCATGCAAGTTACTACCACAGAGCAAAT < 41bp 1 0.714545877733016 1 0.337741017341614 experiment 0.570908244533968 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Glucose_starv_4h TOMM40L ENSG00000158882 CDS Human protein_coding chr1:161198268 chr1:161198282 synonymous SNV . 0 35 hm1A_associated_SNPs_3763 0 0 0 1 161198265 161198286 mRNA hsa-miR-874 TOMM40L miRanda miRanda
2192 chr2 27599558 27599558 1 + T A UCEC 27599561 + 27599541 27599581 41 CCACGGCAATTTCGCCTTCGAGGGCATTGGAGATGAGGATC CCACGGCAATTTCGCCTACGAGGGCATTGGAGATGAGGATC < 41bp 1 0.790927959112012 1 0.234287351369858 experiment 0.418144081775977 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control SNX17 ENSG00000115234 CDS Human protein_coding chr2:27599561 chr2:27599558 nonsynonymous SNV 0.998 4 18 hm1A_associated_SNPs_3773 0 0 1 1 27599548 27599569 mRNA hsa-miR-365 SNX17 miRanda miRanda
2192 chr6 33240496 33240496 1 + C T UCEC 33240498 + 33240478 33240518 41 TAGCCTTTGCCATCACTGCCATTAAGGTAAGTGAAGTAGGG TAGCCTTTGCCATCACTGTCATTAAGGTAAGTGAAGTAGGG < 41bp 1 0.497184473483577 1 0.112830728292465 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33240498 chr6:33240496 nonsynonymous SNV 0.995 2 19 hm1A_associated_SNPs_3929 0 0 1 7 33240494 33240503 mRNA hsa-miR-10a RPS18 miRanda miRanda
2192 chr6 33240496 33240496 1 + C T UCEC 33240498 + 33240478 33240518 41 TAGCCTTTGCCATCACTGCCATTAAGGTAAGTGAAGTAGGG TAGCCTTTGCCATCACTGTCATTAAGGTAAGTGAAGTAGGG < 41bp 1 0.497184473483577 1 0.112830728292465 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33240498 chr6:33240496 nonsynonymous SNV 0.995 2 19 hm1A_associated_SNPs_3929 0 0 1 7 33240493 33240503 mRNA hsa-miR-10b RPS18 miRanda miRanda
2192 chr6 33240496 33240496 1 + C T UCEC 33240498 + 33240478 33240518 41 TAGCCTTTGCCATCACTGCCATTAAGGTAAGTGAAGTAGGG TAGCCTTTGCCATCACTGTCATTAAGGTAAGTGAAGTAGGG < 41bp 1 0.497184473483577 1 0.112830728292465 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33240498 chr6:33240496 nonsynonymous SNV 0.995 2 19 hm1A_associated_SNPs_3929 0 0 1 7 33240473 33240498 mRNA hsa-miR-34a RPS18 miRanda miRanda
2192 chr6 33240496 33240496 1 + C T UCEC 33240498 + 33240478 33240518 41 TAGCCTTTGCCATCACTGCCATTAAGGTAAGTGAAGTAGGG TAGCCTTTGCCATCACTGTCATTAAGGTAAGTGAAGTAGGG < 41bp 1 0.497184473483577 1 0.112830728292465 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33240498 chr6:33240496 nonsynonymous SNV 0.995 2 19 hm1A_associated_SNPs_3929 0 0 1 7 33240473 33240498 mRNA hsa-miR-34c-5p RPS18 miRanda miRanda
2192 chr6 33240496 33240496 1 + C T UCEC 33240498 + 33240478 33240518 41 TAGCCTTTGCCATCACTGCCATTAAGGTAAGTGAAGTAGGG TAGCCTTTGCCATCACTGTCATTAAGGTAAGTGAAGTAGGG < 41bp 1 0.497184473483577 1 0.112830728292465 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33240498 chr6:33240496 nonsynonymous SNV 0.995 2 19 hm1A_associated_SNPs_3929 0 0 1 7 33240492 33240503 mRNA hsa-miR-339-5p RPS18 miRanda miRanda
2192 chr6 33240496 33240496 1 + C T UCEC 33240498 + 33240478 33240518 41 TAGCCTTTGCCATCACTGCCATTAAGGTAAGTGAAGTAGGG TAGCCTTTGCCATCACTGTCATTAAGGTAAGTGAAGTAGGG < 41bp 1 0.497184473483577 1 0.112830728292465 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33240498 chr6:33240496 nonsynonymous SNV 0.995 2 19 hm1A_associated_SNPs_3929 0 0 1 7 33240476 33240498 mRNA hsa-miR-449a RPS18 miRanda miRanda
2192 chr6 33240496 33240496 1 + C T UCEC 33240498 + 33240478 33240518 41 TAGCCTTTGCCATCACTGCCATTAAGGTAAGTGAAGTAGGG TAGCCTTTGCCATCACTGTCATTAAGGTAAGTGAAGTAGGG < 41bp 1 0.497184473483577 1 0.112830728292465 experiment 1 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33240498 chr6:33240496 nonsynonymous SNV 0.995 2 19 hm1A_associated_SNPs_3929 0 0 1 7 33240476 33240498 mRNA hsa-miR-449b RPS18 miRanda miRanda
2192 chr3 39450134 39450134 1 + G A UCEC 39450117 + 39450097 39450137 41 GCATCTATATCATAAATCTCAAGAGGACCTGGGAGAAGCTT GCATCTATATCATAAATCTCAAGAGGACCTGGGAGAAACTT < 41bp 1 0.783429823701252 1 0.138398587703705 experiment 0.433140352597497 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPSA ENSG00000168028 CDS Human protein_coding chr3:39450117 chr3:39450134 synonymous SNV . 0 38 hm1A_associated_SNPs_3930 0 0 1 1 39450129 39450150 mRNA hsa-miR-22 RPSA miRanda miRanda
2192 chr20 32664566 32664566 1 + C T UCEC 32664568 + 32664548 32664588 41 ACAGATCAAGTCCAATATCGATGCCCTGCTGAGCCGCTTGG ACAGATCAAGTCCAATATTGATGCCCTGCTGAGCCGCTTGG < 41bp 1 0.555044620669747 1 0.661365866661072 experiment 0.889910758660506 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32664568 chr20:32664566 synonymous SNV . 0 19 hm1A_associated_SNPs_3934 0 0 1 2 32664562 32664583 mRNA hsa-miR-24 RALY miRanda miRanda
2192 chr20 32664566 32664566 1 + C T UCEC 32664568 + 32664548 32664588 41 ACAGATCAAGTCCAATATCGATGCCCTGCTGAGCCGCTTGG ACAGATCAAGTCCAATATTGATGCCCTGCTGAGCCGCTTGG < 41bp 1 0.555044620669747 1 0.661365866661072 experiment 0.889910758660506 Functional Loss 26863196;GSE70487;m1A-seq;HeLa;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32664568 chr20:32664566 synonymous SNV . 0 19 hm1A_associated_SNPs_3934 0 0 1 2 32664557 32664579 mRNA hsa-miR-214 RALY miRanda miRanda
2192 chr12 8866508 8866508 1 + C T UCEC 8866521 + 8866501 8866541 41 AGATCGTCGCATCAGGGAAGACTATCCTCAAAAAGAGATTT AGATCGTTGCATCAGGGAAGACTATCCTCAAAAAGAGATTT < 41bp 1 0.63801821901679 1 0.913699507713318 experiment 0.723963561966421 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Heat_shock|26863196;GSE70485;m1A-seq;HepG2;Control RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8866521 chr12:8866508 nonsynonymous SNV 1.000 0 8 hm1A_associated_SNPs_3943 0 0 1 1 8866508 8866530 mRNA hsa-let-7i RIMKLB miRanda miRanda
2192 chr9 140059747 140059747 1 + C T UCEC 140059742 + 140059722 140059762 41 AAGAGGCGTAGGTCCTCCAAAGACACGGTAAGGGGGAGAGC AAGAGGCGTAGGTCCTCCAAAGACATGGTAAGGGGGAGAGC < 41bp 1 0.47230653458562 1 0.109594315290451 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140059742 chr9:140059747 nonsynonymous SNV 1.000 3 26 hm1A_associated_SNPs_3965 0 0 0 1 140059729 140059749 mRNA hsa-miR-187 GRIN1 miRanda miRanda
2192 chr11 65270824 65270824 1 + G A UCEC 65270826 + 65270806 65270846 41 AGCCTTTTTAAAATTGTAGGACTTGTTCCTGTGGGCTTCAG AGCCTTTTTAAAATTGTAAGACTTGTTCCTGTGGGCTTCAG < 41bp 1 0.135264381947037 1 0.0783096551895142 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270826 chr11:65270824 . . 0 19 hm1A_associated_SNPs_4010 0 0 1 1 65270817 65270837 lncRNA hsa-miR-873-5p MALAT1 miRanda starBase2
2192 chr11 65270834 65270834 1 + C T UCEC 65270826 + 65270806 65270846 41 AGCCTTTTTAAAATTGTAGGACTTGTTCCTGTGGGCTTCAG AGCCTTTTTAAAATTGTAGGACTTGTTCTTGTGGGCTTCAG < 41bp 1 0.142721852009299 1 0.0578093826770782 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270826 chr11:65270834 . . 0 29 hm1A_associated_SNPs_4039 0 0 1 1 65270817 65270837 lncRNA hsa-miR-873-5p MALAT1 miRanda starBase2
2192 chr11 65273644 65273644 1 + C A UCEC 65273630 + 65273610 65273650 41 GGTTTCCAGGACGGGGTTCAAATCCCTGCGGCGTCTTTGCT GGTTTCCAGGACGGGGTTCAAATCCCTGCGGCGTATTTGCT < 41bp 1 0.649742668044734 1 0.800957560539246 experiment 0.700514663910531 Functional Loss 29072297;GSE97420;m1A-seq;HEK293T;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273630 chr11:65273644 . . 0 35 hm1A_associated_SNPs_4040 0 0 1 1 65273632 65273654 lncRNA hsa-miR-330-3p MALAT1 miRanda starBase2
2192 chr4 119200461 119200461 1 + G A UCEC 119200469 + 119200449 119200489 41 AGATTCTGACTTGCACAAGTAACATTCACTGTTAAAAACCT AGATTCTGACTTACACAAGTAACATTCACTGTTAAAAACCT < 41bp 1 0.227571602188023 1 0.0864020884037018 experiment 1 Functional Loss 29072297;GSE97420;m1A-seq;HEK293T;Control SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200469 chr4:119200461 . . 0 13 hm1A_associated_SNPs_4056 0 0 1 5 119200443 119200465 mRNA hsa-miR-19a SNORA24 miRanda miRanda
2192 chr4 119200461 119200461 1 + G A UCEC 119200469 + 119200449 119200489 41 AGATTCTGACTTGCACAAGTAACATTCACTGTTAAAAACCT AGATTCTGACTTACACAAGTAACATTCACTGTTAAAAACCT < 41bp 1 0.227571602188023 1 0.0864020884037018 experiment 1 Functional Loss 29072297;GSE97420;m1A-seq;HEK293T;Control SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200469 chr4:119200461 . . 0 13 hm1A_associated_SNPs_4056 0 0 1 5 119200443 119200465 mRNA hsa-miR-19b SNORA24 miRanda miRanda
2192 chr4 119200461 119200461 1 + G A UCEC 119200469 + 119200449 119200489 41 AGATTCTGACTTGCACAAGTAACATTCACTGTTAAAAACCT AGATTCTGACTTACACAAGTAACATTCACTGTTAAAAACCT < 41bp 1 0.227571602188023 1 0.0864020884037018 experiment 1 Functional Loss 29072297;GSE97420;m1A-seq;HEK293T;Control SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200469 chr4:119200461 . . 0 13 hm1A_associated_SNPs_4056 0 0 1 5 119200443 119200467 mRNA hsa-miR-182 SNORA24 miRanda miRanda
2192 chr4 119200461 119200461 1 + G A UCEC 119200469 + 119200449 119200489 41 AGATTCTGACTTGCACAAGTAACATTCACTGTTAAAAACCT AGATTCTGACTTACACAAGTAACATTCACTGTTAAAAACCT < 41bp 1 0.227571602188023 1 0.0864020884037018 experiment 1 Functional Loss 29072297;GSE97420;m1A-seq;HEK293T;Control SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200469 chr4:119200461 . . 0 13 hm1A_associated_SNPs_4056 0 0 1 5 119200440 119200461 mRNA hsa-miR-224 SNORA24 miRanda miRanda
2192 chr4 119200461 119200461 1 + G A UCEC 119200469 + 119200449 119200489 41 AGATTCTGACTTGCACAAGTAACATTCACTGTTAAAAACCT AGATTCTGACTTACACAAGTAACATTCACTGTTAAAAACCT < 41bp 1 0.227571602188023 1 0.0864020884037018 experiment 1 Functional Loss 29072297;GSE97420;m1A-seq;HEK293T;Control SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200469 chr4:119200461 . . 0 13 hm1A_associated_SNPs_4056 0 0 1 5 119200441 119200466 mRNA hsa-miR-454 SNORA24 miRanda miRanda
2192 chr1 14099625 14099625 1 + A G UCEC 14099627 + 14099607 14099647 41 AAACAAAATCCAAGACATACAACTGAAGACAAGTGAGCCAG AAACAAAATCCAAGACATGCAACTGAAGACAAGTGAGCCAG < 41bp 1 0.313387673066429 1 0.0781460702419281 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control PRDM2 ENSG00000116731 CDS Human protein_coding chr1:14099627 chr1:14099625 nonsynonymous SNV 0.004 1 19 hm1A_associated_SNPs_4064 0 0 1 1 14099625 14099648 mRNA hsa-miR-149 PRDM2 miRanda miRanda
2192 chr17 43181118 43181118 1 + G A UCEC 43181131 + 43181111 43181151 41 TTTATACGCTGCCCTCCACCATCATGAACCATCCAACCCAC TTTATACACTGCCCTCCACCATCATGAACCATCCAACCCAC < 41bp 1 0.584007007666423 1 0.904890716075897 experiment 0.831985984667155 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control NMT1 ENSG00000136448 CDS Human protein_coding chr17:43181131 chr17:43181118 synonymous SNV . 0 8 hm1A_associated_SNPs_4093 0 0 1 1 43181117 43181138 mRNA hsa-miR-433 NMT1 miRanda miRanda
2192 chr20 60963513 60963513 1 + G T UCEC 60963514 + 60963494 60963534 41 CCTTTTCCCCTGGTTCTAGGAACTTTTGACTGGAGAGAATC CCTTTTCCCCTGGTTCTAGTAACTTTTGACTGGAGAGAATC < 41bp 1 0.245599252575374 1 0.145095854997635 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 CDS Human protein_coding chr20:60963514 chr20:60963513 nonsynonymous SNV 0.932 1 20 hm1A_associated_SNPs_4121 0 0 1 1 60963497 60963516 mRNA hsa-miR-384 RPS21 miRanda miRanda
2192 chr20 60963513 60963513 1 + G T UCEC 60963515 + 60963495 60963535 41 CTTTTCCCCTGGTTCTAGGAACTTTTGACTGGAGAGAATCA CTTTTCCCCTGGTTCTAGTAACTTTTGACTGGAGAGAATCA < 41bp 1 0.225409702922449 1 0.244274854660034 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 CDS Human protein_coding chr20:60963515 chr20:60963513 nonsynonymous SNV 0.932 1 19 hm1A_associated_SNPs_4122 0 0 1 1 60963497 60963516 mRNA hsa-miR-384 RPS21 miRanda miRanda
2192 chr20 60963513 60963513 1 + G T UCEC 60963522 + 60963502 60963542 41 CCTGGTTCTAGGAACTTTTGACTGGAGAGAATCACAGATGT CCTGGTTCTAGTAACTTTTGACTGGAGAGAATCACAGATGT < 41bp 1 0.392258695468347 1 0.108830690383911 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 CDS Human protein_coding chr20:60963522 chr20:60963513 nonsynonymous SNV 0.932 1 12 hm1A_associated_SNPs_4123 0 0 1 1 60963497 60963516 mRNA hsa-miR-384 RPS21 miRanda miRanda
2192 chr20 60963513 60963513 1 + G T UCEC 60963527 + 60963507 60963547 41 TTCTAGGAACTTTTGACTGGAGAGAATCACAGATGTGGAAT TTCTAGTAACTTTTGACTGGAGAGAATCACAGATGTGGAAT < 41bp 1 0.393277427229632 1 0.786616563796997 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 CDS Human protein_coding chr20:60963527 chr20:60963513 nonsynonymous SNV 0.932 1 7 hm1A_associated_SNPs_4124 0 0 1 1 60963497 60963516 mRNA hsa-miR-384 RPS21 miRanda miRanda
2192 chr20 60963513 60963513 1 + G T UCEC 60963529 + 60963509 60963549 41 CTAGGAACTTTTGACTGGAGAGAATCACAGATGTGGAATAT CTAGTAACTTTTGACTGGAGAGAATCACAGATGTGGAATAT < 41bp 1 0.330027532788791 1 0.968476414680481 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 CDS Human protein_coding chr20:60963529 chr20:60963513 nonsynonymous SNV 0.932 1 5 hm1A_associated_SNPs_4125 0 0 1 1 60963497 60963516 mRNA hsa-miR-384 RPS21 miRanda miRanda
2192 chr20 60963513 60963513 1 + G T UCEC 60963531 + 60963511 60963551 41 AGGAACTTTTGACTGGAGAGAATCACAGATGTGGAATATTT AGTAACTTTTGACTGGAGAGAATCACAGATGTGGAATATTT < 41bp 1 0.426900412583901 1 0.413773328065872 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS21 ENSG00000171858 CDS Human protein_coding chr20:60963531 chr20:60963513 nonsynonymous SNV 0.932 1 3 hm1A_associated_SNPs_4126 0 0 1 1 60963497 60963516 mRNA hsa-miR-384 RPS21 miRanda miRanda
2192 chr12 31237930 31237930 1 + C A UCEC 31237949 + 31237929 31237969 41 TCTCCTCCGCCTCAGCAGGGAGATGCTAGAGACAGGCCCGG TATCCTCCGCCTCAGCAGGGAGATGCTAGAGACAGGCCCGG < 41bp 1 0.66252139599726 1 0.21257296204567 experiment 0.67495720800548 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31237949 chr12:31237930 nonsynonymous SNV 0.204 3 2 hm1A_associated_SNPs_4138 0 0 0 1 31237927 31237948 mRNA hsa-miR-370 DDX11 miRanda miRanda
2192 chr2 27599559 27599559 1 + C T UCEC 27599561 + 27599541 27599581 41 CCACGGCAATTTCGCCTTCGAGGGCATTGGAGATGAGGATC CCACGGCAATTTCGCCTTTGAGGGCATTGGAGATGAGGATC < 41bp 1 0.540541959054053 1 0.156523793935776 experiment 0.918916081891895 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control SNX17 ENSG00000115234 CDS Human protein_coding chr2:27599561 chr2:27599559 synonymous SNV . 0 19 hm1A_associated_SNPs_4165 0 0 1 1 27599548 27599569 mRNA hsa-miR-365 SNX17 miRanda miRanda
2192 chr19 50363335 50363335 1 + C T UCEC 50363343 + 50363323 50363363 41 CTTCATTGGCCTCATCCCCCATGACCAGGGCAACTTTGTCA CTTCATTGGCCTTATCCCCCATGACCAGGGCAACTTTGTCA < 41bp 1 0.72348072631839 1 0.814060807228088 experiment 0.55303854736322 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50363343 chr19:50363335 nonsynonymous SNV 1.000 1 13 hm1A_associated_SNPs_4229 0 0 1 1 50363333 50363355 mRNA hsa-miR-874 PTOV1 miRanda miRanda
2192 chr1 161198278 161198278 1 + A G UCEC 161198268 + 161198248 161198288 41 GATCAGGCGGGGCCCATGCAAGTTACTACCACAGGGCAAAT GATCAGGCGGGGCCCATGCAAGTTACTACCGCAGGGCAAAT < 41bp 1 0.732733132428555 1 0.529768407344818 experiment 0.53453373514289 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Glucose_starv_4h TOMM40L ENSG00000158882 CDS Human protein_coding chr1:161198268 chr1:161198278 nonsynonymous SNV 0.999 1 31 hm1A_associated_SNPs_4246 0 0 0 1 161198265 161198286 mRNA hsa-miR-874 TOMM40L miRanda miRanda
2192 chr6 33243614 33243614 1 + C T UCEC 33243628 + 33243608 33243648 41 GGAAAGCAGACATTGACCTCACCAAGAGGGCGGGAGAACTC GGAAAGTAGACATTGACCTCACCAAGAGGGCGGGAGAACTC < 41bp 1 0.696279884353444 1 0.463776797056198 experiment 0.607440231293112 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243628 chr6:33243614 nonsynonymous SNV 1.000 2 7 hm1A_associated_SNPs_4249 0 0 1 1 33243597 33243619 mRNA hsa-miR-346 RPS18 miRanda miRanda
2192 chr12 53421677 53421677 1 + A G UCEC 53421681 + 53421661 53421701 41 CGGGATCGCTATGATGACCGAGGCAGCAGAGACTATGATAG CGGGATCGCTATGATGGCCGAGGCAGCAGAGACTATGATAG < 41bp 1 0.412892297643777 1 0.754891037940979 experiment 1 Functional Loss 29072297;GSE97419;m1A-seq;HEK293T;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53421681 chr12:53421677 nonsynonymous SNV 1.000 3 17 hm1A_associated_SNPs_4253 0 0 1 1 53421671 53421694 mRNA hsa-miR-431 EIF4B miRanda miRanda
2192 chr20 57485114 57485114 1 + T C UCEC 57485098 + 57485078 57485118 41 GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCTCGCT GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCCCGCT < 41bp 1 0.326864275015606 1 0.161904484033585 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485098 chr20:57485114 synonymous SNV . 0 37 hm1A_associated_SNPs_4255 0 0 1 4 57485097 57485119 mRNA hsa-miR-15a GNAS miRanda miRanda
2192 chr20 57485114 57485114 1 + T C UCEC 57485098 + 57485078 57485118 41 GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCTCGCT GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCCCGCT < 41bp 1 0.326864275015606 1 0.161904484033585 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485098 chr20:57485114 synonymous SNV . 0 37 hm1A_associated_SNPs_4255 0 0 1 4 57485097 57485119 mRNA hsa-miR-15b GNAS miRanda miRanda
2192 chr20 57485114 57485114 1 + T C UCEC 57485098 + 57485078 57485118 41 GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCTCGCT GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCCCGCT < 41bp 1 0.326864275015606 1 0.161904484033585 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485098 chr20:57485114 synonymous SNV . 0 37 hm1A_associated_SNPs_4255 0 0 1 4 57485104 57485126 mRNA hsa-miR-142-3p GNAS miRanda miRanda
2192 chr20 57485114 57485114 1 + T C UCEC 57485098 + 57485078 57485118 41 GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCTCGCT GAAATCGAAGATTGAGGACTACTTTCCAGAATTTGCCCGCT < 41bp 1 0.326864275015606 1 0.161904484033585 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485098 chr20:57485114 synonymous SNV . 0 37 hm1A_associated_SNPs_4255 0 0 1 4 57485098 57485119 mRNA hsa-miR-497 GNAS miRanda miRanda
2192 chr11 65270027 65270027 1 + A C UCEC 65270026 + 65270006 65270046 41 GTAAATTGTAACTGATTAAGAATTGTGATAGTTCAGCTTGA GTAAATTGTAACTGATTAAGACTTGTGATAGTTCAGCTTGA < 41bp 1 0.178527423604121 1 0.341969072818756 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270026 chr11:65270027 . . 0 22 hm1A_associated_SNPs_4300 0 0 1 1 65270026 65270048 lncRNA hsa-miR-498 MALAT1 miRanda starBase2
2192 chr6 32943284 32943284 1 + T C UCEC 32943269 + 32943249 32943289 41 GTATGCAAGATTTTAATACCATGTTCACCAACTGTTACATT GTATGCAAGATTTTAATACCATGTTCACCAACTGTCACATT < 41bp 1 0.703107059442226 1 0.987348198890686 experiment 0.593785881115549 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32943269 chr6:32943284 nonsynonymous SNV 1.000 4 36 hm1A_associated_SNPs_4313 0 0 1 1 32943266 32943287 mRNA hsa-miR-194 BRD2 miRanda miRanda
2192 chr16 21964747 21964747 1 + G T UCEC 21964732 + 21964712 21964752 41 GGCAGTGACCGTGTGTCAGAACAATCTTGAATCATGAAGCT GGCAGTGACCGTGTGTCAGAACAATCTTGAATCATTAAGCT < 41bp 1 0.415004149763052 1 0.138878136873245 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control UQCRC2 ENSG00000140740 CDS Human protein_coding chr16:21964732 chr16:21964747 nonsynonymous SNV 0.856 2 36 hm1A_associated_SNPs_4344 0 0 1 1 21964728 21964749 mRNA hsa-miR-433 UQCRC2 miRanda miRanda
2192 chr16 21964747 21964747 1 + G T UCEC 21964762 + 21964742 21964782 41 ATCATGAAGCTACTAACCAGAGCCGGCTCTTTCTCGGTGAG ATCATTAAGCTACTAACCAGAGCCGGCTCTTTCTCGGTGAG < 41bp 1 0.498563400911122 1 0.282213747501373 experiment 1 Functional Loss 26863196;GSE70486;m1A-seq;HEK293;Control UQCRC2 ENSG00000140740 CDS Human protein_coding chr16:21964762 chr16:21964747 nonsynonymous SNV 0.856 2 6 hm1A_associated_SNPs_4345 0 0 1 1 21964728 21964749 mRNA hsa-miR-433 UQCRC2 miRanda miRanda
2192 chr6 33240502 33240502 1 + A C UCEC 33240489 + 33240469 33240509 41 GGCGGAAAATAGCCTTTGCCATCACTGCCATTAAGGTAAGT GGCGGAAAATAGCCTTTGCCATCACTGCCATTACGGTAAGT < 41bp 1 0.798647804757673 1 0.999660491943359 experiment 0.402704390484654 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33240489 chr6:33240502 nonsynonymous SNV 0.997 4 34 hm1A_associated_SNPs_4366 0 0 1 3 33240494 33240503 mRNA hsa-miR-10a RPS18 miRanda miRanda
2192 chr6 33240502 33240502 1 + A C UCEC 33240489 + 33240469 33240509 41 GGCGGAAAATAGCCTTTGCCATCACTGCCATTAAGGTAAGT GGCGGAAAATAGCCTTTGCCATCACTGCCATTACGGTAAGT < 41bp 1 0.798647804757673 1 0.999660491943359 experiment 0.402704390484654 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33240489 chr6:33240502 nonsynonymous SNV 0.997 4 34 hm1A_associated_SNPs_4366 0 0 1 3 33240493 33240503 mRNA hsa-miR-10b RPS18 miRanda miRanda
2192 chr6 33240502 33240502 1 + A C UCEC 33240489 + 33240469 33240509 41 GGCGGAAAATAGCCTTTGCCATCACTGCCATTAAGGTAAGT GGCGGAAAATAGCCTTTGCCATCACTGCCATTACGGTAAGT < 41bp 1 0.798647804757673 1 0.999660491943359 experiment 0.402704390484654 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33240489 chr6:33240502 nonsynonymous SNV 0.997 4 34 hm1A_associated_SNPs_4366 0 0 1 3 33240492 33240503 mRNA hsa-miR-339-5p RPS18 miRanda miRanda
2192 chr6 33240502 33240502 1 + A C UCEC 33240498 + 33240478 33240518 41 TAGCCTTTGCCATCACTGCCATTAAGGTAAGTGAAGTAGGG TAGCCTTTGCCATCACTGCCATTACGGTAAGTGAAGTAGGG < 41bp 1 0.770207508228396 1 0.998590648174286 experiment 0.459584983543209 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33240498 chr6:33240502 nonsynonymous SNV 0.997 4 25 hm1A_associated_SNPs_4367 0 0 1 3 33240494 33240503 mRNA hsa-miR-10a RPS18 miRanda miRanda
2192 chr6 33240502 33240502 1 + A C UCEC 33240498 + 33240478 33240518 41 TAGCCTTTGCCATCACTGCCATTAAGGTAAGTGAAGTAGGG TAGCCTTTGCCATCACTGCCATTACGGTAAGTGAAGTAGGG < 41bp 1 0.770207508228396 1 0.998590648174286 experiment 0.459584983543209 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33240498 chr6:33240502 nonsynonymous SNV 0.997 4 25 hm1A_associated_SNPs_4367 0 0 1 3 33240493 33240503 mRNA hsa-miR-10b RPS18 miRanda miRanda
2192 chr6 33240502 33240502 1 + A C UCEC 33240498 + 33240478 33240518 41 TAGCCTTTGCCATCACTGCCATTAAGGTAAGTGAAGTAGGG TAGCCTTTGCCATCACTGCCATTACGGTAAGTGAAGTAGGG < 41bp 1 0.770207508228396 1 0.998590648174286 experiment 0.459584983543209 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33240498 chr6:33240502 nonsynonymous SNV 0.997 4 25 hm1A_associated_SNPs_4367 0 0 1 3 33240492 33240503 mRNA hsa-miR-339-5p RPS18 miRanda miRanda
2192 chr20 32664949 32664949 1 + C T UCEC 32664952 + 32664932 32664972 41 AGCCGGCCACCAGCCCCCCAAGAGAACACAACTTCTGAGGC AGCCGGCCACCAGCCCCTCAAGAGAACACAACTTCTGAGGC < 41bp 1 0.785514314294454 1 0.189261555671692 experiment 0.428971371411093 Functional Loss 26863196;GSE70486;m1A-seq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32664952 chr20:32664949 synonymous SNV . 0 18 hm1A_associated_SNPs_4407 0 0 1 1 32664941 32664966 mRNA hsa-miR-382 RALY miRanda miRanda
2192 chr2 120125830 120125830 1 + C T UCEC 120125825 + 120125805 120125845 41 GACCAAGCCATCGGATGAGGAGATGCTGTTCATCTATGGCC GACCAAGCCATCGGATGAGGAGATGTTGTTCATCTATGGCC < 41bp 1 0.47316052671966 1 0.53553581237793 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DBI ENSG00000155368 CDS Human protein_coding chr2:120125825 chr2:120125830 synonymous SNV . 0 26 hm1A_associated_SNPs_4429 0 0 1 1 120125829 120125851 mRNA hsa-miR-142-3p DBI miRanda miRanda
2192 chr19 1272050 1272050 1 + G T UCEC 1272033 + 1272013 1272053 41 CTCGGGCGGGTCCTACAGAGACAGTTATGACAGTTACGGTA CTCGGGCGGGTCCTACAGAGACAGTTATGACAGTTACTGTA < 41bp 1 0.387108395696471 1 0.33797213435173 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Control CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272033 chr19:1272050 stopgain 0.272 0 38 hm1A_associated_SNPs_4450 0 0 1 1 1272040 1272061 mRNA hsa-miR-218 CIRBP miRanda miRanda
2192 chr17 43181117 43181117 1 + C T UCEC 43181131 + 43181111 43181151 41 TTTATACGCTGCCCTCCACCATCATGAACCATCCAACCCAC TTTATATGCTGCCCTCCACCATCATGAACCATCCAACCCAC < 41bp 1 0.536683462702693 1 0.816306412220001 experiment 0.926633074594614 Functional Loss 31719534;GSE97908;miCLIP;HEK293T;Control NMT1 ENSG00000136448 CDS Human protein_coding chr17:43181131 chr17:43181117 nonsynonymous SNV 0.997 4 7 hm1A_associated_SNPs_4474 0 0 1 1 43181117 43181138 mRNA hsa-miR-433 NMT1 miRanda miRanda
2192 chr11 65266835 65266835 1 + G T UCEC 65266823 + 65266803 65266843 41 AAAAAATGTATTTAAAAGAAAATTGAGAGAAAGGACTACAG AAAAAATGTATTTAAAAGAAAATTGAGAGAAATGACTACAG < 41bp 1 0.0746984753121308 1 0.0802087187767029 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65266823 chr11:65266835 . . 0 33 hm1A_associated_SNPs_4518 0 0 1 1 65266828 65266848 lncRNA hsa-miR-760 MALAT1 miRanda starBase2
2192 chr11 65266835 65266835 1 + G T UCEC 65266828 + 65266808 65266848 41 ATGTATTTAAAAGAAAATTGAGAGAAAGGACTACAGAGCCC ATGTATTTAAAAGAAAATTGAGAGAAATGACTACAGAGCCC < 41bp 1 0.0845283273599824 1 0.373569339513779 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65266828 chr11:65266835 . . 0 28 hm1A_associated_SNPs_4519 0 0 1 1 65266828 65266848 lncRNA hsa-miR-760 MALAT1 miRanda starBase2
2192 chr11 65266835 65266835 1 + G T UCEC 65266833 + 65266813 65266853 41 TTTAAAAGAAAATTGAGAGAAAGGACTACAGAGCCCCGAAT TTTAAAAGAAAATTGAGAGAAATGACTACAGAGCCCCGAAT < 41bp 1 0.0709349371232248 1 0.124108105897903 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65266833 chr11:65266835 . . 0 23 hm1A_associated_SNPs_4520 0 0 1 1 65266828 65266848 lncRNA hsa-miR-760 MALAT1 miRanda starBase2
2192 chr11 65266835 65266835 1 + G T UCEC 65266840 + 65266820 65266860 41 GAAAATTGAGAGAAAGGACTACAGAGCCCCGAATTAATACC GAAAATTGAGAGAAATGACTACAGAGCCCCGAATTAATACC < 41bp 1 0.125044372866285 1 0.151349455118179 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65266840 chr11:65266835 . . 0 16 hm1A_associated_SNPs_4521 0 0 1 1 65266828 65266848 lncRNA hsa-miR-760 MALAT1 miRanda starBase2
2192 chr11 65266835 65266835 1 + G T UCEC 65266844 + 65266824 65266864 41 ATTGAGAGAAAGGACTACAGAGCCCCGAATTAATACCAATA ATTGAGAGAAATGACTACAGAGCCCCGAATTAATACCAATA < 41bp 1 0.0792056166114666 1 0.0761154294013977 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65266844 chr11:65266835 . . 0 12 hm1A_associated_SNPs_4522 0 0 1 1 65266828 65266848 lncRNA hsa-miR-760 MALAT1 miRanda starBase2
2192 chr7 158672548 158672548 1 + T C UCEC 158672533 + 158672513 158672553 41 GAGAAATATTCCAAAGAGAAAAGTAATTCATTCTCTGACAA GAGAAATATTCCAAAGAGAAAAGTAATTCATTCTCCGACAA < 41bp 1 0.189590071090033 1 0.253494679927826 experiment 1 Functional Loss 26863196;GSE70485;m1A-seq;HepG2;Glucose_starv_4h WDR60 ENSG00000126870 CDS Human protein_coding chr7:158672533 chr7:158672548 synonymous SNV . 0 36 hm1A_associated_SNPs_4552 0 0 1 1 158672527 158672548 mRNA hsa-miR-143 WDR60 miRanda miRanda
2192 chr12 77158072 77158072 1 + A G LIHC 77158072 + 77158052 77158092 41 GGACGGCCCGGATGAGTACGATACCGAAGCGGGCTGTGTGC GGACGGCCCGGATGAGTACGGTACCGAAGCGGGCTGTGTGC Direct Loss 0.992241740786958 0 0.7979095 0.7746428 prediction 0.984483481573915 Functional Loss - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77158072 chr12:77158072 nonsynonymous SNV 0.998 0 21 hm1A_associated_SNPs_4581 0 0 1 1 77158048 77158074 mRNA hsa-miR-487b ZDHHC17 miRanda miRanda
2192 chr5 68513672 68513672 1 + A G STAD 68513672 + 68513652 68513692 41 GGGTCATGATGGGCAGCAAGATGGCGTCTGCTAGTAGGGTC GGGTCATGATGGGCAGCAAGGTGGCGTCTGCTAGTAGGGTC Direct Loss 0.976438483859511 0 0.35529685 0.31358838 prediction 0.952876967719023 Functional Loss - MRPS36 ENSG00000134056 CDS Human protein_coding chr5:68513672 chr5:68513672 nonsynonymous SNV 1.000 1 21 hm1A_associated_SNPs_4715 0 0 1 1 68513671 68513693 mRNA hsa-miR-504 MRPS36 miRanda miRanda
2192 chr19 18731658 18731658 1 + A C rs1043192 18731658 + 18731638 18731678 41 TCACCTTCCTTTTTCCTTCTATGTCCCCTCTCTGCGGGGGG TCACCTTCCTTTTTCCTTCTCTGTCCCCTCTCTGCGGGGGG Direct Loss 0.969324284534855 0 0.29112375 0.27722067 prediction 0.93864856906971 Functional Loss - TMEM59L ENSG00000105696 UTR3 Human protein_coding chr19:18731658 chr19:18731658 . . 0 21 hm1A_associated_SNPs_4824 0 0 1 1 18731641 18731662 mRNA hsa-miR-376c TMEM59L miRanda miRanda
2192 chr13 70681873 70681873 1 + A G rs3751428 70681873 + 70681853 70681893 41 AGGCTGGCAGCTCACGCAGGAGTAGGCTGGTCAGCAGGTGG AGGCTGGCAGCTCACGCAGGGGTAGGCTGGTCAGCAGGTGG Direct Loss 0.968865313991972 0 0.50240415 0.48761925 prediction 0.937730627983944 Functional Loss - ATXN8OS ENSG00000230223 ncRNA_exonic Human antisense chr13:70681873 chr13:70681873 . . 0 21 hm1A_associated_SNPs_4829 0 0 0 1 70681850 70681873 mRNA hsa-miR-370 ATXN8OS miRanda miRanda
2192 chr2 162280821 162280821 1 + A T rs141802593 162280821 + 162280801 162280841 41 CCCCAGCTCCGCCTCCCCACACTCCTCCTTGCGCACCCACT CCCCAGCTCCGCCTCCCCACTCTCCTCCTTGCGCACCCACT Direct Loss 0.968403430384429 0 0.41696292 0.37568015 prediction 0.936806860768858 Functional Loss - TBR1 ENSG00000251621 ncRNA_intronic Human 3prime_overlapping_ncRNA chr2:162280821 chr2:162280821 . . 0 21 hm1A_associated_SNPs_4844 0 0 0 1 162280800 162280821 mRNA hsa-miR-491-5p TBR1 miRanda miRanda
2192 chr15 69714378 69714378 1 + A G LUSC 69714378 + 69714358 69714398 41 GAAGTGGAAAAACTCACACAATGACTGGTTCTCCAGGGGAA GAAGTGGAAAAACTCACACAGTGACTGGTTCTCCAGGGGAA Direct Loss 0.966583320684052 0 0.10720396 0.10329056 prediction 0.933166641368103 Functional Loss - KIF23 ENSG00000137807 CDS Human protein_coding chr15:69714378 chr15:69714378 nonsynonymous SNV 0.953 4 21 hm1A_associated_SNPs_4882 0 0 1 3 69714373 69714396 mRNA hsa-miR-125b KIF23 miRanda miRanda
2192 chr15 69714378 69714378 1 + A G LUSC 69714378 + 69714358 69714398 41 GAAGTGGAAAAACTCACACAATGACTGGTTCTCCAGGGGAA GAAGTGGAAAAACTCACACAGTGACTGGTTCTCCAGGGGAA Direct Loss 0.966583320684052 0 0.10720396 0.10329056 prediction 0.933166641368103 Functional Loss - KIF23 ENSG00000137807 CDS Human protein_coding chr15:69714378 chr15:69714378 nonsynonymous SNV 0.953 4 21 hm1A_associated_SNPs_4882 0 0 1 3 69714371 69714396 mRNA hsa-miR-125a-5p KIF23 miRanda miRanda
2192 chr15 69714378 69714378 1 + A G LUSC 69714378 + 69714358 69714398 41 GAAGTGGAAAAACTCACACAATGACTGGTTCTCCAGGGGAA GAAGTGGAAAAACTCACACAGTGACTGGTTCTCCAGGGGAA Direct Loss 0.966583320684052 0 0.10720396 0.10329056 prediction 0.933166641368103 Functional Loss - KIF23 ENSG00000137807 CDS Human protein_coding chr15:69714378 chr15:69714378 nonsynonymous SNV 0.953 4 21 hm1A_associated_SNPs_4882 0 0 1 3 69714363 69714386 mRNA hsa-miR-338-3p KIF23 miRanda miRanda
2192 chrX 123480569 123480569 1 + A G UCEC 123480569 + 123480549 123480589 41 CCTGCTTGCCACTGGGCTGGATGGCAGCTATTTGCTGAGGG CCTGCTTGCCACTGGGCTGGGTGGCAGCTATTTGCTGAGGG Direct Loss 0.964719597324561 0 0.15002954 0.14430821 prediction 0.929439194649122 Functional Loss - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123480569 chrX:123480569 nonsynonymous SNV 1.000 5 21 hm1A_associated_SNPs_4928 0 0 0 1 123480557 123480578 mRNA hsa-miR-22 SH2D1A miRanda miRanda
2192 chr3 93781971 93781971 1 + A G SKCM 93781971 + 93781951 93781991 41 TGAAAGCTCTCAGCGGGACAATGCTGACCCAGGTGAGACCT TGAAAGCTCTCAGCGGGACAGTGCTGACCCAGGTGAGACCT Direct Loss 0.961858736077167 0 0.2206155 0.1665183 prediction 0.923717472154334 Functional Loss - NSUN3 ENSG00000178694 CDS Human protein_coding chr3:93781971 chr3:93781971 nonsynonymous SNV 0.074 0 21 hm1A_associated_SNPs_4997 0 0 0 3 93781967 93781982 mRNA hsa-miR-187 NSUN3 miRanda miRanda
2192 chr3 93781971 93781971 1 + A G SKCM 93781971 + 93781951 93781991 41 TGAAAGCTCTCAGCGGGACAATGCTGACCCAGGTGAGACCT TGAAAGCTCTCAGCGGGACAGTGCTGACCCAGGTGAGACCT Direct Loss 0.961858736077167 0 0.2206155 0.1665183 prediction 0.923717472154334 Functional Loss - NSUN3 ENSG00000178694 CDS Human protein_coding chr3:93781971 chr3:93781971 nonsynonymous SNV 0.074 0 21 hm1A_associated_SNPs_4997 0 0 0 3 93781964 93781982 mRNA hsa-miR-330-5p NSUN3 miRanda miRanda
2192 chr3 93781971 93781971 1 + A G SKCM 93781971 + 93781951 93781991 41 TGAAAGCTCTCAGCGGGACAATGCTGACCCAGGTGAGACCT TGAAAGCTCTCAGCGGGACAGTGCTGACCCAGGTGAGACCT Direct Loss 0.961858736077167 0 0.2206155 0.1665183 prediction 0.923717472154334 Functional Loss - NSUN3 ENSG00000178694 CDS Human protein_coding chr3:93781971 chr3:93781971 nonsynonymous SNV 0.074 0 21 hm1A_associated_SNPs_4997 0 0 0 3 93781964 93781982 mRNA hsa-miR-326 NSUN3 miRanda miRanda
2192 chr3 100148659 100148659 1 + A G LUSC 100148659 + 100148639 100148679 41 CCACAGCTGGAGAGAGGAGGATCAGAGAGGACTCCGGGAAC CCACAGCTGGAGAGAGGAGGGTCAGAGAGGACTCCGGGAAC Direct Loss 0.961580536583689 0 0.3489334 0.3535679 prediction 0.923161073167378 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100148659 chr3:100148659 nonsynonymous SNV 0.927 0 21 hm1A_associated_SNPs_5004 0 0 1 1 100148652 100148675 mRNA hsa-miR-127-3p LNP1 miRanda miRanda
2192 chr1 3786266 3786266 1 + A T UCEC 3786266 + 3786246 3786286 41 GCTCCGGTCCATGCAGTACAATGGCAGCTACTTCGACAGAG GCTCCGGTCCATGCAGTACATTGGCAGCTACTTCGACAGAG Direct Loss 0.96103310351951 0 0.44953585 0.4615153 prediction 0.922066207039019 Functional Loss - DFFB ENSG00000169598 CDS Human protein_coding chr1:3786266 chr1:3786266 nonsynonymous SNV 0.961 4 21 hm1A_associated_SNPs_5019 0 0 0 1 3786255 3786275 mRNA hsa-miR-22 DFFB miRanda miRanda
2192 chr17 61628097 61628097 1 + A G HNSC 61628097 + 61628077 61628117 41 TGAAGCGCCCTGGACAGTCTACGCGATGAACTGGAGTGTGC TGAAGCGCCCTGGACAGTCTGCGCGATGAACTGGAGTGTGC Direct Loss 0.956846960466091 0 0.47438183 0.49787694 prediction 0.913693920932182 Functional Loss - DCAF7 ENSG00000136485 CDS Human protein_coding chr17:61628097 chr17:61628097 nonsynonymous SNV 0.998 4 21 hm1A_associated_SNPs_5135 0 0 1 2 61628088 61628112 mRNA hsa-miR-145 DCAF7 miRanda miRanda
2192 chr17 61628097 61628097 1 + A G HNSC 61628097 + 61628077 61628117 41 TGAAGCGCCCTGGACAGTCTACGCGATGAACTGGAGTGTGC TGAAGCGCCCTGGACAGTCTGCGCGATGAACTGGAGTGTGC Direct Loss 0.956846960466091 0 0.47438183 0.49787694 prediction 0.913693920932182 Functional Loss - DCAF7 ENSG00000136485 CDS Human protein_coding chr17:61628097 chr17:61628097 nonsynonymous SNV 0.998 4 21 hm1A_associated_SNPs_5135 0 0 1 2 61628090 61628113 mRNA hsa-miR-136 DCAF7 miRanda miRanda
2192 chr2 27873033 27873033 1 + C T COAD 27873035 + 27873015 27873055 41 AGAATTTTATGCAAGAATCGATGGCACAATACTGGAAGAGA AGAATTTTATGCAAGAATTGATGGCACAATACTGGAAGAGA < 41bp 0.805438659089642 0.494596103376874 0.17224059 0.06483072 prediction 0.610877318179285 Functional Loss - GPN1 ENSG00000198522 CDS Human protein_coding chr2:27873035 chr2:27873033 nonsynonymous SNV 0.975 1 19 hm1A_associated_SNPs_5236 0 0 1 3 27873032 27873050 mRNA hsa-miR-144 GPN1 miRanda miRanda
2192 chr2 27873033 27873033 1 + C T COAD 27873035 + 27873015 27873055 41 AGAATTTTATGCAAGAATCGATGGCACAATACTGGAAGAGA AGAATTTTATGCAAGAATTGATGGCACAATACTGGAAGAGA < 41bp 0.805438659089642 0.494596103376874 0.17224059 0.06483072 prediction 0.610877318179285 Functional Loss - GPN1 ENSG00000198522 CDS Human protein_coding chr2:27873035 chr2:27873033 nonsynonymous SNV 0.975 1 19 hm1A_associated_SNPs_5236 0 0 1 3 27873026 27873051 mRNA hsa-miR-145 GPN1 miRanda miRanda
2192 chr2 27873033 27873033 1 + C T COAD 27873035 + 27873015 27873055 41 AGAATTTTATGCAAGAATCGATGGCACAATACTGGAAGAGA AGAATTTTATGCAAGAATTGATGGCACAATACTGGAAGAGA < 41bp 0.805438659089642 0.494596103376874 0.17224059 0.06483072 prediction 0.610877318179285 Functional Loss - GPN1 ENSG00000198522 CDS Human protein_coding chr2:27873035 chr2:27873033 nonsynonymous SNV 0.975 1 19 hm1A_associated_SNPs_5236 0 0 1 3 27873021 27873044 mRNA hsa-miR-455-5p GPN1 miRanda miRanda
2192 chr7 23240296 23240296 1 + C T BLCA 23240298 + 23240278 23240318 41 GAAGAACTGGAACAATTTCAATCCAAGAAATTTACTCTGGG GAAGAACTGGAACAATTTTAATCCAAGAAATTTACTCTGGG < 41bp 0.80353317516802 0.498470475530446 0.08735117 0.089722395 prediction 0.60706635033604 Functional Loss - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23240298 chr7:23240296 stopgain 1.000 1 19 hm1A_associated_SNPs_5237 0 0 1 2 23240277 23240298 mRNA hsa-miR-203 NUPL2 miRanda miRanda
2192 chr7 23240296 23240296 1 + C T BLCA 23240298 + 23240278 23240318 41 GAAGAACTGGAACAATTTCAATCCAAGAAATTTACTCTGGG GAAGAACTGGAACAATTTTAATCCAAGAAATTTACTCTGGG < 41bp 0.80353317516802 0.498470475530446 0.08735117 0.089722395 prediction 0.60706635033604 Functional Loss - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23240298 chr7:23240296 stopgain 1.000 1 19 hm1A_associated_SNPs_5237 0 0 1 2 23240295 23240315 mRNA hsa-miR-539 NUPL2 miRanda miRanda
2192 chr8 57129894 57129894 1 + C T SKCM 57129896 + 57129876 57129916 41 ATGCCTGTACACAGAATTCTATCGTGATGCAGAGAAGAAAG ATGCCTGTACACAGAATTTTATCGTGATGCAGAGAAGAAAG < 41bp 0.801055269539025 0.5027086000939 0.14074033 0.11077812 prediction 0.59669333889025 Functional Loss - CHCHD7 ENSG00000170791 CDS Human protein_coding chr8:57129896 chr8:57129894 nonsynonymous SNV 0.512 1 19 hm1A_associated_SNPs_5244 0 0 1 1 57129890 57129910 mRNA hsa-miR-544 CHCHD7 miRanda miRanda
2192 chr10 70930975 70930975 1 + C T STAD 70930977 + 70930957 70930997 41 AGAACAAACTTTCACCAGCGATTTGAATCTCCAGAATCACA AGAACAAACTTTCACCAGTGATTTGAATCTCCAGAATCACA < 41bp 0.80382594811424 0.512379954881774 0.29281563 0.061381876 prediction 0.582891986464932 Functional Loss - VPS26A ENSG00000122958 CDS Human protein_coding chr10:70930977 chr10:70930975 stopgain 0.999 1 19 hm1A_associated_SNPs_5260 0 0 1 1 70930954 70930976 mRNA hsa-miR-138 VPS26A miRanda miRanda
2192 chr1 233807173 233807173 1 + C T BLCA 233807175 + 233807155 233807195 41 ACCAACTGTCCTTCTCCTCGATCACAGACCAGGCAGCTGGC ACCAACTGTCCTTCTCCTTGATCACAGACCAGGCAGCTGGC < 41bp 0.797718502172307 0.50759251574199 0.4421301 0.22186291 prediction 0.580251972860634 Functional Loss - KCNK1 ENSG00000135750 CDS Human protein_coding chr1:233807175 chr1:233807173 nonsynonymous SNV 0.993 2 19 hm1A_associated_SNPs_5265 0 0 1 1 233807172 233807193 mRNA hsa-miR-22 KCNK1 miRanda miRanda
2192 chr21 27066102 27066102 1 + C T SKCM 27066104 + 27066084 27066124 41 AGCTGAGATGATAGATTTCAATATCCGGATCAAAAATGTGA AGCTGAGATGATAGATTTTAATATCCGGATCAAAAATGTGA < 41bp 0.789773190842325 0.497552076933062 0.13620517 0.11153492 prediction 0.57954638168465 Functional Loss - JAM2 ENSG00000154721 CDS Human protein_coding chr21:27066104 chr21:27066102 synonymous SNV . 0 19 hm1A_associated_SNPs_5267 0 0 1 1 27066083 27066104 mRNA hsa-miR-203 JAM2 miRanda miRanda
2192 chr8 91054995 91054995 1 + C T BLCA 91054997 + 91054977 91055017 41 TAAATATGGAATGCGATTCAATGTGATTCAACCAGGGCCTA TAAATATGGAATGCGATTTAATGTGATTCAACCAGGGCCTA < 41bp 0.788892608658709 0.503089945394493 0.10731447 0.07587391 prediction 0.571605326528432 Functional Loss - DECR1 ENSG00000104325 CDS Human protein_coding chr8:91054997 chr8:91054995 synonymous SNV . 0 19 hm1A_associated_SNPs_5301 0 0 1 3 91054983 91055003 mRNA hsa-miR-23a DECR1 miRanda miRanda
2192 chr8 91054995 91054995 1 + C T BLCA 91054997 + 91054977 91055017 41 TAAATATGGAATGCGATTCAATGTGATTCAACCAGGGCCTA TAAATATGGAATGCGATTTAATGTGATTCAACCAGGGCCTA < 41bp 0.788892608658709 0.503089945394493 0.10731447 0.07587391 prediction 0.571605326528432 Functional Loss - DECR1 ENSG00000104325 CDS Human protein_coding chr8:91054997 chr8:91054995 synonymous SNV . 0 19 hm1A_associated_SNPs_5301 0 0 1 3 91054983 91055003 mRNA hsa-miR-23b DECR1 miRanda miRanda
2192 chr8 91054995 91054995 1 + C T BLCA 91054997 + 91054977 91055017 41 TAAATATGGAATGCGATTCAATGTGATTCAACCAGGGCCTA TAAATATGGAATGCGATTTAATGTGATTCAACCAGGGCCTA < 41bp 0.788892608658709 0.503089945394493 0.10731447 0.07587391 prediction 0.571605326528432 Functional Loss - DECR1 ENSG00000104325 CDS Human protein_coding chr8:91054997 chr8:91054995 synonymous SNV . 0 19 hm1A_associated_SNPs_5301 0 0 1 3 91054995 91055016 mRNA hsa-miR-874 DECR1 miRanda miRanda
2192 chr16 84497374 84497374 1 + C A rs200011337 84497376 + 84497356 84497396 41 CACCTTCCCTAATCATCTCGATCTGGTTGTGACTGTGGCCC CACCTTCCCTAATCATCTAGATCTGGTTGTGACTGTGGCCC < 41bp 0.803304425612413 0.517945271688403 0.7895844 0.58197445 prediction 0.570718307848022 Functional Loss - ATP2C2-AS1 ENSG00000261286 ncRNA_intronic Human antisense chr16:84497376 chr16:84497374 . . 0 19 hm1A_associated_SNPs_5304 0 0 0 1 84497355 84497375 mRNA hsa-miR-143 ATP2C2 miRanda miRanda
2192 chr4 148457096 148457096 1 + C T GBM 148457098 + 148457078 148457118 41 TGCCCTTGGTGTGCACTGCGATCTTCTACACCCTCATGACT TGCCCTTGGTGTGCACTGTGATCTTCTACACCCTCATGACT < 41bp 0.793840818493655 0.512655294126758 0.3132221 0.13431543 prediction 0.562371048733792 Functional Loss - EDNRA ENSG00000151617 CDS Human protein_coding chr4:148457098 chr4:148457096 nonsynonymous SNV 0.704 4 19 hm1A_associated_SNPs_5349 0 0 0 3 148457075 148457096 mRNA hsa-miR-148a EDNRA miRanda miRanda
2192 chr4 148457096 148457096 1 + C T GBM 148457098 + 148457078 148457118 41 TGCCCTTGGTGTGCACTGCGATCTTCTACACCCTCATGACT TGCCCTTGGTGTGCACTGTGATCTTCTACACCCTCATGACT < 41bp 0.793840818493655 0.512655294126758 0.3132221 0.13431543 prediction 0.562371048733792 Functional Loss - EDNRA ENSG00000151617 CDS Human protein_coding chr4:148457098 chr4:148457096 nonsynonymous SNV 0.704 4 19 hm1A_associated_SNPs_5349 0 0 0 3 148457076 148457096 mRNA hsa-miR-152 EDNRA miRanda miRanda
2192 chr4 148457096 148457096 1 + C T GBM 148457098 + 148457078 148457118 41 TGCCCTTGGTGTGCACTGCGATCTTCTACACCCTCATGACT TGCCCTTGGTGTGCACTGTGATCTTCTACACCCTCATGACT < 41bp 0.793840818493655 0.512655294126758 0.3132221 0.13431543 prediction 0.562371048733792 Functional Loss - EDNRA ENSG00000151617 CDS Human protein_coding chr4:148457098 chr4:148457096 nonsynonymous SNV 0.704 4 19 hm1A_associated_SNPs_5349 0 0 0 3 148457076 148457096 mRNA hsa-miR-148b EDNRA miRanda miRanda
2192 chr1 202991991 202991991 1 + C T SKCM 202991993 + 202991973 202992013 41 TCCATTTCAGTTTACTATCAATGTGAGCACGGACATGCGGC TCCATTTCAGTTTACTATTAATGTGAGCACGGACATGCGGC < 41bp 0.805083834522016 0.52466845705163 0.20432624 0.17812017 prediction 0.560830754940772 Functional Loss - TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202991993 chr1:202991991 synonymous SNV . 0 19 hm1A_associated_SNPs_5360 0 0 1 2 202991983 202991999 mRNA hsa-miR-23a TMEM183A miRanda miRanda
2192 chr1 202991991 202991991 1 + C T SKCM 202991993 + 202991973 202992013 41 TCCATTTCAGTTTACTATCAATGTGAGCACGGACATGCGGC TCCATTTCAGTTTACTATTAATGTGAGCACGGACATGCGGC < 41bp 0.805083834522016 0.52466845705163 0.20432624 0.17812017 prediction 0.560830754940772 Functional Loss - TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202991993 chr1:202991991 synonymous SNV . 0 19 hm1A_associated_SNPs_5360 0 0 1 2 202991983 202991999 mRNA hsa-miR-23b TMEM183A miRanda miRanda
2192 chr5 53839102 53839102 1 + C T UCEC 53839104 + 53839084 53839124 41 TTCAGGATCGCTGTAACACTATTTCTTTTGCCACTTTGGCT TTCAGGATCGCTGTAACATTATTTCTTTTGCCACTTTGGCT < 41bp 0.779409213607907 0.445677475755743 0.31641576 0.2770538 prediction 0.558818427215815 Functional Loss - SNX18 ENSG00000178996 CDS Human protein_coding chr5:53839104 chr5:53839102 nonsynonymous SNV 1.000 0 19 hm1A_associated_SNPs_5374 0 0 1 1 53839093 53839119 mRNA hsa-miR-301a SNX18 miRanda miRanda
2192 chr1 77516015 77516015 1 + C T SKCM 77516017 + 77515997 77516037 41 GGAGCTCTGTGACAGGATCAATGTTTATGGCATGGTGCCCC GGAGCTCTGTGACAGGATTAATGTTTATGGCATGGTGCCCC < 41bp 0.777472557658747 0.489616627460776 0.12042153 0.094771445 prediction 0.554945115317495 Functional Loss - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77516017 chr1:77516015 synonymous SNV . 0 19 hm1A_associated_SNPs_5411 0 0 0 6 77516009 77516025 mRNA hsa-miR-30a ST6GALNAC5 miRanda miRanda
2192 chr1 77516015 77516015 1 + C T SKCM 77516017 + 77515997 77516037 41 GGAGCTCTGTGACAGGATCAATGTTTATGGCATGGTGCCCC GGAGCTCTGTGACAGGATTAATGTTTATGGCATGGTGCCCC < 41bp 0.777472557658747 0.489616627460776 0.12042153 0.094771445 prediction 0.554945115317495 Functional Loss - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77516017 chr1:77516015 synonymous SNV . 0 19 hm1A_associated_SNPs_5411 0 0 0 6 77516009 77516025 mRNA hsa-miR-30c ST6GALNAC5 miRanda miRanda
2192 chr1 77516015 77516015 1 + C T SKCM 77516017 + 77515997 77516037 41 GGAGCTCTGTGACAGGATCAATGTTTATGGCATGGTGCCCC GGAGCTCTGTGACAGGATTAATGTTTATGGCATGGTGCCCC < 41bp 0.777472557658747 0.489616627460776 0.12042153 0.094771445 prediction 0.554945115317495 Functional Loss - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77516017 chr1:77516015 synonymous SNV . 0 19 hm1A_associated_SNPs_5411 0 0 0 6 77516009 77516025 mRNA hsa-miR-30d ST6GALNAC5 miRanda miRanda
2192 chr1 77516015 77516015 1 + C T SKCM 77516017 + 77515997 77516037 41 GGAGCTCTGTGACAGGATCAATGTTTATGGCATGGTGCCCC GGAGCTCTGTGACAGGATTAATGTTTATGGCATGGTGCCCC < 41bp 0.777472557658747 0.489616627460776 0.12042153 0.094771445 prediction 0.554945115317495 Functional Loss - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77516017 chr1:77516015 synonymous SNV . 0 19 hm1A_associated_SNPs_5411 0 0 0 6 77516009 77516025 mRNA hsa-miR-30b ST6GALNAC5 miRanda miRanda
2192 chr1 77516015 77516015 1 + C T SKCM 77516017 + 77515997 77516037 41 GGAGCTCTGTGACAGGATCAATGTTTATGGCATGGTGCCCC GGAGCTCTGTGACAGGATTAATGTTTATGGCATGGTGCCCC < 41bp 0.777472557658747 0.489616627460776 0.12042153 0.094771445 prediction 0.554945115317495 Functional Loss - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77516017 chr1:77516015 synonymous SNV . 0 19 hm1A_associated_SNPs_5411 0 0 0 6 77516009 77516025 mRNA hsa-miR-30e ST6GALNAC5 miRanda miRanda
2192 chr1 77516015 77516015 1 + C T SKCM 77516017 + 77515997 77516037 41 GGAGCTCTGTGACAGGATCAATGTTTATGGCATGGTGCCCC GGAGCTCTGTGACAGGATTAATGTTTATGGCATGGTGCCCC < 41bp 0.777472557658747 0.489616627460776 0.12042153 0.094771445 prediction 0.554945115317495 Functional Loss - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77516017 chr1:77516015 synonymous SNV . 0 19 hm1A_associated_SNPs_5411 0 0 0 6 77516009 77516024 mRNA hsa-miR-494 ST6GALNAC5 miRanda miRanda
2192 chr7 66785291 66785291 1 + C A rs191701358 66785293 + 66785273 66785313 41 AGGCTAATTAGGACAGATCAATGTACACTTACCTCTCCAGA AGGCTAATTAGGACAGATAAATGTACACTTACCTCTCCAGA < 41bp 0.792823845460545 0.519152907966466 0.1620427 0.11692342 prediction 0.547341874988158 Functional Loss - STAG3L4 ENSG00000106610 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:66785293 chr7:66785291 . . 0 19 hm1A_associated_SNPs_5502 0 0 0 1 66785286 66785307 mRNA hsa-miR-196a STAG3L4 miRanda miRanda
2192 chr12 120990361 120990361 1 + C T STAD 120990363 + 120990343 120990383 41 CTCTGGTCCTAAGAAGATCAACCTGAACCACTTGTTGAATT CTCTGGTCCTAAGAAGATTAACCTGAACCACTTGTTGAATT < 41bp 0.772369023292684 0.497389827940968 0.1282945 0.10649499 prediction 0.544738046585369 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:120990363 chr12:120990361 synonymous SNV . 0 19 hm1A_associated_SNPs_5542 0 0 1 2 120990354 120990375 mRNA hsa-miR-140-5p RNF10 miRanda miRanda
2192 chr12 120990361 120990361 1 + C T STAD 120990363 + 120990343 120990383 41 CTCTGGTCCTAAGAAGATCAACCTGAACCACTTGTTGAATT CTCTGGTCCTAAGAAGATTAACCTGAACCACTTGTTGAATT < 41bp 0.772369023292684 0.497389827940968 0.1282945 0.10649499 prediction 0.544738046585369 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:120990363 chr12:120990361 synonymous SNV . 0 19 hm1A_associated_SNPs_5542 0 0 1 2 120990346 120990368 mRNA hsa-miR-125a-3p RNF10 miRanda miRanda
2192 chr12 6575058 6575058 1 + C A GBM 6575060 + 6575040 6575080 41 GCTTGGCAGCACTGCTCTCAAATTGTGATGCTCCTGCCTGC GCTTGGCAGCACTGCTCTAAAATTGTGATGCTCCTGCCTGC < 41bp 0.78441476766506 0.512164302874856 0.1245909 0.12151569 prediction 0.544500929580406 Functional Loss - VAMP1 ENSG00000139190 CDS Human protein_coding chr12:6575060 chr12:6575058 stopgain 1.000 1 19 hm1A_associated_SNPs_5547 0 0 0 2 6575053 6575075 mRNA hsa-miR-28-5p TAPBPL miRanda miRanda
2192 chr12 6575058 6575058 1 + C A GBM 6575060 + 6575040 6575080 41 GCTTGGCAGCACTGCTCTCAAATTGTGATGCTCCTGCCTGC GCTTGGCAGCACTGCTCTAAAATTGTGATGCTCCTGCCTGC < 41bp 0.78441476766506 0.512164302874856 0.1245909 0.12151569 prediction 0.544500929580406 Functional Loss - VAMP1 ENSG00000139190 CDS Human protein_coding chr12:6575060 chr12:6575058 stopgain 1.000 1 19 hm1A_associated_SNPs_5547 0 0 0 2 6575051 6575075 mRNA hsa-miR-708 TAPBPL miRanda miRanda
2192 chr12 123285842 123285842 1 + C T COAD 123285844 + 123285824 123285864 41 AGAGAAGAAACAACAGATCGATACTGTGTTTGGGGAGAAAA AGAGAAGAAACAACAGATTGATACTGTGTTTGGGGAGAAAA < 41bp 0.784840454714584 0.512669685714936 0.86123836 0.2996617 prediction 0.544341537999295 Functional Loss - CCDC62 ENSG00000130783 CDS Human protein_coding chr12:123285844 chr12:123285842 synonymous SNV . 0 19 hm1A_associated_SNPs_5551 0 0 0 1 123285830 123285851 mRNA hsa-miR-144 CCDC62 miRanda miRanda
2192 chr1 150461542 150461542 1 + C T UCEC 150461544 + 150461524 150461564 41 CCTCAGATTTCTGACATTCGATTCCCCAGAGGGGAAAGCAG CCTCAGATTTCTGACATTTGATTCCCCAGAGGGGAAAGCAG < 41bp 0.790489666568536 0.518742346972244 0.6451865 0.0932219 prediction 0.543494639192584 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150461544 chr1:150461542 synonymous SNV . 0 19 hm1A_associated_SNPs_5562 1 0 1 2 150461532 150461555 mRNA hsa-miR-330-5p TARS2 miRanda miRanda
2192 chr1 150461542 150461542 1 + C T UCEC 150461544 + 150461524 150461564 41 CCTCAGATTTCTGACATTCGATTCCCCAGAGGGGAAAGCAG CCTCAGATTTCTGACATTTGATTCCCCAGAGGGGAAAGCAG < 41bp 0.790489666568536 0.518742346972244 0.6451865 0.0932219 prediction 0.543494639192584 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150461544 chr1:150461542 synonymous SNV . 0 19 hm1A_associated_SNPs_5562 1 0 1 2 150461536 150461555 mRNA hsa-miR-326 TARS2 miRanda miRanda
2192 chr3 179082965 179082965 1 + C T HNSC 179082967 + 179082947 179082987 41 GCCTAATATTTTCATTCTCAATAATCGTTGGGATGCCTCTG GCCTAATATTTTCATTCTTAATAATCGTTGGGATGCCTCTG < 41bp 0.807122624039844 0.535447391179193 0.14140356 0.13619995 prediction 0.543350465721302 Functional Loss - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179082967 chr3:179082965 synonymous SNV . 0 19 hm1A_associated_SNPs_5564 0 0 0 1 179082961 179082983 mRNA hsa-miR-324-5p MFN1 miRanda miRanda
2192 chr4 128564998 128564998 1 + C T UCEC 128565000 + 128564980 128565020 41 GGAGTCATTGTCCAACAGCGATACAAAGATGTGAATGTTTA GGAGTCATTGTCCAACAGTGATACAAAGATGTGAATGTTTA < 41bp 0.771630188140788 0.490575728240829 0.17749608 0.055059284 prediction 0.543260376281577 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128565000 chr4:128564998 stopgain 0.953 0 19 hm1A_associated_SNPs_5566 0 0 0 5 128564992 128565018 mRNA hsa-miR-181a INTU miRanda miRanda
2192 chr4 128564998 128564998 1 + C T UCEC 128565000 + 128564980 128565020 41 GGAGTCATTGTCCAACAGCGATACAAAGATGTGAATGTTTA GGAGTCATTGTCCAACAGTGATACAAAGATGTGAATGTTTA < 41bp 0.771630188140788 0.490575728240829 0.17749608 0.055059284 prediction 0.543260376281577 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128565000 chr4:128564998 stopgain 0.953 0 19 hm1A_associated_SNPs_5566 0 0 0 5 128564992 128565018 mRNA hsa-miR-181b INTU miRanda miRanda
2192 chr4 128564998 128564998 1 + C T UCEC 128565000 + 128564980 128565020 41 GGAGTCATTGTCCAACAGCGATACAAAGATGTGAATGTTTA GGAGTCATTGTCCAACAGTGATACAAAGATGTGAATGTTTA < 41bp 0.771630188140788 0.490575728240829 0.17749608 0.055059284 prediction 0.543260376281577 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128565000 chr4:128564998 stopgain 0.953 0 19 hm1A_associated_SNPs_5566 0 0 0 5 128564996 128565018 mRNA hsa-miR-181c INTU miRanda miRanda
2192 chr4 128564998 128564998 1 + C T UCEC 128565000 + 128564980 128565020 41 GGAGTCATTGTCCAACAGCGATACAAAGATGTGAATGTTTA GGAGTCATTGTCCAACAGTGATACAAAGATGTGAATGTTTA < 41bp 0.771630188140788 0.490575728240829 0.17749608 0.055059284 prediction 0.543260376281577 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128565000 chr4:128564998 stopgain 0.953 0 19 hm1A_associated_SNPs_5566 0 0 0 5 128564992 128565018 mRNA hsa-miR-181d INTU miRanda miRanda
2192 chr4 128564998 128564998 1 + C T UCEC 128565000 + 128564980 128565020 41 GGAGTCATTGTCCAACAGCGATACAAAGATGTGAATGTTTA GGAGTCATTGTCCAACAGTGATACAAAGATGTGAATGTTTA < 41bp 0.771630188140788 0.490575728240829 0.17749608 0.055059284 prediction 0.543260376281577 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128565000 chr4:128564998 stopgain 0.953 0 19 hm1A_associated_SNPs_5566 0 0 0 5 128564998 128565019 mRNA hsa-miR-543 INTU miRanda miRanda
2192 chr1 235599908 235599908 1 + C T UCEC 235599910 + 235599890 235599930 41 GTACCTGGTAGTAAACGACAATCAGATATCACAAGTAAGAG GTACCTGGTAGTAAACGATAATCAGATATCACAAGTAAGAG < 41bp 0.787860746797654 0.517543714011097 0.21134126 0.2140348 prediction 0.540634065573114 Functional Loss - TBCE ENSG00000116957 CDS Human protein_coding chr1:235599910 chr1:235599908 synonymous SNV . 0 19 hm1A_associated_SNPs_5608 0 0 1 1 235599893 235599913 mRNA hsa-miR-219-5p TBCE miRanda miRanda
2192 chr12 112585913 112585913 1 + C T BLCA 112585915 + 112585895 112585935 41 ACGTGCCTTACCTTCACTCAATACTGGCAGCTCTTCCCCCA ACGTGCCTTACCTTCACTTAATACTGGCAGCTCTTCCCCCA < 41bp 0.798011924198211 0.527926352303116 0.124753416 0.08565274 prediction 0.54017114379019 Functional Loss - TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112585915 chr12:112585913 synonymous SNV . 0 19 hm1A_associated_SNPs_5619 0 0 1 1 112585903 112585927 mRNA hsa-miR-22 TRAFD1 miRanda miRanda
2192 chr1 36437683 36437683 1 + C T BLCA 36437685 + 36437665 36437705 41 ATCGACCTTTCAAGGTGTCAATCAAATTTGTCTCTCGGGTG ATCGACCTTTCAAGGTGTTAATCAAATTTGTCTCTCGGGTG < 41bp 0.769996865283994 0.473768082419766 0.17114392 0.19141334 prediction 0.539993730567987 Functional Loss - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36437685 chr1:36437683 nonsynonymous SNV 0.995 1 19 hm1A_associated_SNPs_5623 0 0 1 2 36437665 36437687 mRNA hsa-miR-32 EIF2C3 miRanda miRanda
2192 chr1 36437683 36437683 1 + C T BLCA 36437685 + 36437665 36437705 41 ATCGACCTTTCAAGGTGTCAATCAAATTTGTCTCTCGGGTG ATCGACCTTTCAAGGTGTTAATCAAATTTGTCTCTCGGGTG < 41bp 0.769996865283994 0.473768082419766 0.17114392 0.19141334 prediction 0.539993730567987 Functional Loss - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36437685 chr1:36437683 nonsynonymous SNV 0.995 1 19 hm1A_associated_SNPs_5623 0 0 1 2 36437667 36437687 mRNA hsa-miR-367 EIF2C3 miRanda miRanda
2192 chr10 99213297 99213297 1 + C T rs543646729 99213299 + 99213279 99213319 41 CCAACCAGCCTGGCTAAACAATTGTGTGGGCCACTATAACC CCAACCAGCCTGGCTAAATAATTGTGTGGGCCACTATAACC < 41bp 0.790847728739319 0.521584693895556 0.12260178 0.15634596 prediction 0.538526069687526 Functional Loss - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99213299 chr10:99213297 synonymous SNV . 0 19 hm1A_associated_SNPs_5651 0 0 0 1 99213291 99213312 mRNA hsa-miR-328 ZDHHC16 miRanda miRanda
2192 chr18 21739436 21739436 1 + C T SKCM 21739438 + 21739418 21739458 41 CAAAATTTTTTTTTATAGCAATGGCAACAAGTGAACGAGGA CAAAATTTTTTTTTATAGTAATGGCAACAAGTGAACGAGGA < 41bp 0.805308834671853 0.536083592133396 0.10396695 0.09380397 prediction 0.538450485076914 Functional Loss - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739438 chr18:21739436 nonsynonymous SNV 0.998 2 19 hm1A_associated_SNPs_5658 0 0 0 2 21739436 21739444 mRNA hsa-miR-33a CABYR miRanda miRanda
2192 chr18 21739436 21739436 1 + C T SKCM 21739438 + 21739418 21739458 41 CAAAATTTTTTTTTATAGCAATGGCAACAAGTGAACGAGGA CAAAATTTTTTTTTATAGTAATGGCAACAAGTGAACGAGGA < 41bp 0.805308834671853 0.536083592133396 0.10396695 0.09380397 prediction 0.538450485076914 Functional Loss - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739438 chr18:21739436 nonsynonymous SNV 0.998 2 19 hm1A_associated_SNPs_5658 0 0 0 2 21739436 21739444 mRNA hsa-miR-33b CABYR miRanda miRanda
2192 chrX 129499620 129499620 1 + C A LGG 129499622 + 129499602 129499642 41 CGTGGGACATGTGGATCTCTATAAGGGCACTGTTGATGGTA CGTGGGACATGTGGATCTATATAAGGGCACTGTTGATGGTA < 41bp 0.771742460584387 0.502590585542912 0.087961614 0.09657735 prediction 0.53830375008295 Functional Loss - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129499622 chrX:129499620 synonymous SNV . 0 19 hm1A_associated_SNPs_5660 0 0 1 1 129499615 129499638 mRNA hsa-miR-421 SLC25A14 miRanda miRanda
2192 chr2 215440510 215440510 1 + C T READ 215440512 + 215440492 215440532 41 GGAAGCCTGCTCAGTGTTCGAAACGTGAATGCCAAGGCAAG GGAAGCCTGCTCAGTGTTTGAAACGTGAATGCCAAGGCAAG < 41bp 0.769031542835196 0.484930635937647 0.78769374 0.17564178 prediction 0.538063085670392 Functional Loss - VWC2L ENSG00000174453 CDS Human protein_coding chr2:215440512 chr2:215440510 nonsynonymous SNV 1.000 0 19 hm1A_associated_SNPs_5666 0 0 0 2 215440489 215440510 mRNA hsa-miR-141 VWC2L miRanda miRanda
2192 chr2 215440510 215440510 1 + C T READ 215440512 + 215440492 215440532 41 GGAAGCCTGCTCAGTGTTCGAAACGTGAATGCCAAGGCAAG GGAAGCCTGCTCAGTGTTTGAAACGTGAATGCCAAGGCAAG < 41bp 0.769031542835196 0.484930635937647 0.78769374 0.17564178 prediction 0.538063085670392 Functional Loss - VWC2L ENSG00000174453 CDS Human protein_coding chr2:215440512 chr2:215440510 nonsynonymous SNV 1.000 0 19 hm1A_associated_SNPs_5666 0 0 0 2 215440488 215440510 mRNA hsa-miR-200a VWC2L miRanda miRanda
2192 chrX 118717107 118717107 1 + C A STAD 118717109 + 118717089 118717129 41 GTCTCTGTTGGATGAACCCAATCCCAATAGTCCAGCAAACA GTCTCTGTTGGATGAACCAAATCCCAATAGTCCAGCAAACA < 41bp 0.81362533895833 0.54496789398331 0.09921852 0.0664545 prediction 0.53731488995004 Functional Loss - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118717109 chrX:118717107 synonymous SNV . 0 19 hm1A_associated_SNPs_5678 0 0 1 2 118717102 118717124 mRNA hsa-miR-378 UBE2A miRanda miRanda
2192 chrX 118717107 118717107 1 + C A STAD 118717109 + 118717089 118717129 41 GTCTCTGTTGGATGAACCCAATCCCAATAGTCCAGCAAACA GTCTCTGTTGGATGAACCAAATCCCAATAGTCCAGCAAACA < 41bp 0.81362533895833 0.54496789398331 0.09921852 0.0664545 prediction 0.53731488995004 Functional Loss - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118717109 chrX:118717107 synonymous SNV . 0 19 hm1A_associated_SNPs_5678 0 0 1 2 118717102 118717124 mRNA hsa-miR-422a UBE2A miRanda miRanda
2192 chr19 52095441 52095441 1 - G A rs7259649 52095439 - 52095419 52095459 41 TGTGCCCAACCTTTGTGCCAATCGCCACAACAGTCAAAGGA TGTGCCCAACCTTTGTGCTAATCGCCACAACAGTCAAAGGA < 41bp 0.787756345664486 0.519265904414542 0.10475227 0.11994305 prediction 0.536980882499888 Functional Loss - LINC01530 ENSG00000167765 UTR3 Human other chr19:52095439 chr19:52095441 . . 0 19 hm1A_associated_SNPs_5688 0 0 0 2 52095438 52095460 mRNA hsa-miR-96 FLJ30403 miRanda miRanda
2192 chr19 52095441 52095441 1 - G A rs7259649 52095439 - 52095419 52095459 41 TGTGCCCAACCTTTGTGCCAATCGCCACAACAGTCAAAGGA TGTGCCCAACCTTTGTGCTAATCGCCACAACAGTCAAAGGA < 41bp 0.787756345664486 0.519265904414542 0.10475227 0.11994305 prediction 0.536980882499888 Functional Loss - LINC01530 ENSG00000167765 UTR3 Human other chr19:52095439 chr19:52095441 . . 0 19 hm1A_associated_SNPs_5688 0 0 0 2 52095438 52095459 mRNA hsa-miR-1271 FLJ30403 miRanda miRanda
2192 chr1 197876407 197876407 1 + C T rs148745981 197876409 + 197876389 197876429 41 TTTTAAAAAATAAAGCCCCAATTCAGAATTGCTGGATTATT TTTTAAAAAATAAAGCCCTAATTCAGAATTGCTGGATTATT < 41bp 0.768489507458053 0.490435663745527 0.06241703 0.061466634 prediction 0.536979014916107 Functional Loss - C1orf53 ENSG00000203724 UTR3 Human protein_coding chr1:197876409 chr1:197876407 . . 0 19 hm1A_associated_SNPs_5689 0 0 1 1 197876403 197876424 mRNA hsa-miR-338-3p C1orf53 miRanda miRanda
2192 chr5 162945286 162945286 1 + C T COAD 162945288 + 162945268 162945308 41 ACCTTGGGCATTGGCCAACGAACACCATTTCGAATTGGAAT ACCTTGGGCATTGGCCAATGAACACCATTTCGAATTGGAAT < 41bp 0.768119710677413 0.487484488032566 0.28917223 0.17350987 prediction 0.536239421354825 Functional Loss - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162945288 chr5:162945286 stopgain 0.994 0 19 hm1A_associated_SNPs_5710 0 0 1 1 162945262 162945286 mRNA hsa-miR-182 MAT2B miRanda miRanda
2192 chr12 124104093 124104093 1 + C T UCEC 124104095 + 124104075 124104115 41 TGGACGTTAATACCGACACGATTCCATTTAAAGATAAAATC TGGACGTTAATACCGACATGATTCCATTTAAAGATAAAATC < 41bp 0.848853383853254 0.58115277797059 0.3823473 0.1651769 prediction 0.535401211765329 Functional Loss - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124104095 chr12:124104093 nonsynonymous SNV 0.145 2 19 hm1A_associated_SNPs_5728 0 0 1 1 124104075 124104095 mRNA hsa-miR-187 DDX55 miRanda miRanda
2192 chr4 146029233 146029233 1 + C T SKCM 146029235 + 146029215 146029255 41 GAAAAAGAAACCACACATCGATATTGTGCCAATGCCTTCAA GAAAAAGAAACCACACATTGATATTGTGCCAATGCCTTCAA < 41bp 0.795861313118088 0.528184135979969 0.15060872 0.03754285 prediction 0.535354354276237 Functional Loss - ABCE1 ENSG00000164163 CDS Human protein_coding chr4:146029235 chr4:146029233 stopgain 1.000 1 19 hm1A_associated_SNPs_5731 0 0 1 5 146029224 146029248 mRNA hsa-miR-32 ABCE1 miRanda miRanda
2192 chr4 146029233 146029233 1 + C T SKCM 146029235 + 146029215 146029255 41 GAAAAAGAAACCACACATCGATATTGTGCCAATGCCTTCAA GAAAAAGAAACCACACATTGATATTGTGCCAATGCCTTCAA < 41bp 0.795861313118088 0.528184135979969 0.15060872 0.03754285 prediction 0.535354354276237 Functional Loss - ABCE1 ENSG00000164163 CDS Human protein_coding chr4:146029235 chr4:146029233 stopgain 1.000 1 19 hm1A_associated_SNPs_5731 0 0 1 5 146029224 146029247 mRNA hsa-miR-96 ABCE1 miRanda miRanda
2192 chr4 146029233 146029233 1 + C T SKCM 146029235 + 146029215 146029255 41 GAAAAAGAAACCACACATCGATATTGTGCCAATGCCTTCAA GAAAAAGAAACCACACATTGATATTGTGCCAATGCCTTCAA < 41bp 0.795861313118088 0.528184135979969 0.15060872 0.03754285 prediction 0.535354354276237 Functional Loss - ABCE1 ENSG00000164163 CDS Human protein_coding chr4:146029235 chr4:146029233 stopgain 1.000 1 19 hm1A_associated_SNPs_5731 0 0 1 5 146029226 146029248 mRNA hsa-miR-363 ABCE1 miRanda miRanda
2192 chr4 146029233 146029233 1 + C T SKCM 146029235 + 146029215 146029255 41 GAAAAAGAAACCACACATCGATATTGTGCCAATGCCTTCAA GAAAAAGAAACCACACATTGATATTGTGCCAATGCCTTCAA < 41bp 0.795861313118088 0.528184135979969 0.15060872 0.03754285 prediction 0.535354354276237 Functional Loss - ABCE1 ENSG00000164163 CDS Human protein_coding chr4:146029235 chr4:146029233 stopgain 1.000 1 19 hm1A_associated_SNPs_5731 0 0 1 5 146029225 146029248 mRNA hsa-miR-367 ABCE1 miRanda miRanda
2192 chr4 146029233 146029233 1 + C T SKCM 146029235 + 146029215 146029255 41 GAAAAAGAAACCACACATCGATATTGTGCCAATGCCTTCAA GAAAAAGAAACCACACATTGATATTGTGCCAATGCCTTCAA < 41bp 0.795861313118088 0.528184135979969 0.15060872 0.03754285 prediction 0.535354354276237 Functional Loss - ABCE1 ENSG00000164163 CDS Human protein_coding chr4:146029235 chr4:146029233 stopgain 1.000 1 19 hm1A_associated_SNPs_5731 0 0 1 5 146029225 146029247 mRNA hsa-miR-1271 ABCE1 miRanda miRanda
2192 chr2 210884424 210884424 1 + C A UCEC 210884426 + 210884406 210884446 41 TGATTGTGTCTGGCAGTGCTATTATGAGGAGTGAAGACCCC TGATTGTGTCTGGCAGTGATATTATGAGGAGTGAAGACCCC < 41bp 0.767591276595643 0.500111732845882 0.18222553 0.17120793 prediction 0.534959087499523 Functional Loss - RPE ENSG00000197713 CDS Human protein_coding chr2:210884426 chr2:210884424 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_5739 0 0 1 2 210884409 210884426 mRNA hsa-miR-141 RPE miRanda miRanda
2192 chr2 210884424 210884424 1 + C A UCEC 210884426 + 210884406 210884446 41 TGATTGTGTCTGGCAGTGCTATTATGAGGAGTGAAGACCCC TGATTGTGTCTGGCAGTGATATTATGAGGAGTGAAGACCCC < 41bp 0.767591276595643 0.500111732845882 0.18222553 0.17120793 prediction 0.534959087499523 Functional Loss - RPE ENSG00000197713 CDS Human protein_coding chr2:210884426 chr2:210884424 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_5739 0 0 1 2 210884409 210884426 mRNA hsa-miR-200a RPE miRanda miRanda
2192 chr16 22926688 22926688 1 + C A UCEC 22926690 + 22926670 22926710 41 CATCACGGACAAGCACTTCTATTTCAACAAGACCAAAGGAT CATCACGGACAAGCACTTATATTTCAACAAGACCAAAGGAT < 41bp 0.785756915974216 0.518668294629231 0.13128796 0.07420313 prediction 0.534177242689972 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926690 chr16:22926688 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_5757 0 0 0 14 22926686 22926708 mRNA hsa-miR-9 HS3ST2 miRanda miRanda
2192 chr16 22926688 22926688 1 + C A UCEC 22926690 + 22926670 22926710 41 CATCACGGACAAGCACTTCTATTTCAACAAGACCAAAGGAT CATCACGGACAAGCACTTATATTTCAACAAGACCAAAGGAT < 41bp 0.785756915974216 0.518668294629231 0.13128796 0.07420313 prediction 0.534177242689972 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926690 chr16:22926688 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_5757 0 0 0 14 22926666 22926688 mRNA hsa-miR-302a HS3ST2 miRanda miRanda
2192 chr16 22926688 22926688 1 + C A UCEC 22926690 + 22926670 22926710 41 CATCACGGACAAGCACTTCTATTTCAACAAGACCAAAGGAT CATCACGGACAAGCACTTATATTTCAACAAGACCAAAGGAT < 41bp 0.785756915974216 0.518668294629231 0.13128796 0.07420313 prediction 0.534177242689972 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926690 chr16:22926688 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_5757 0 0 0 14 22926664 22926688 mRNA hsa-miR-302b HS3ST2 miRanda miRanda
2192 chr16 22926688 22926688 1 + C A UCEC 22926690 + 22926670 22926710 41 CATCACGGACAAGCACTTCTATTTCAACAAGACCAAAGGAT CATCACGGACAAGCACTTATATTTCAACAAGACCAAAGGAT < 41bp 0.785756915974216 0.518668294629231 0.13128796 0.07420313 prediction 0.534177242689972 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926690 chr16:22926688 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_5757 0 0 0 14 22926664 22926688 mRNA hsa-miR-302c HS3ST2 miRanda miRanda
2192 chr16 22926688 22926688 1 + C A UCEC 22926690 + 22926670 22926710 41 CATCACGGACAAGCACTTCTATTTCAACAAGACCAAAGGAT CATCACGGACAAGCACTTATATTTCAACAAGACCAAAGGAT < 41bp 0.785756915974216 0.518668294629231 0.13128796 0.07420313 prediction 0.534177242689972 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926690 chr16:22926688 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_5757 0 0 0 14 22926665 22926688 mRNA hsa-miR-302d HS3ST2 miRanda miRanda
2192 chr16 22926688 22926688 1 + C A UCEC 22926690 + 22926670 22926710 41 CATCACGGACAAGCACTTCTATTTCAACAAGACCAAAGGAT CATCACGGACAAGCACTTATATTTCAACAAGACCAAAGGAT < 41bp 0.785756915974216 0.518668294629231 0.13128796 0.07420313 prediction 0.534177242689972 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926690 chr16:22926688 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_5757 0 0 0 14 22926666 22926688 mRNA hsa-miR-372 HS3ST2 miRanda miRanda
2192 chr16 22926688 22926688 1 + C A UCEC 22926690 + 22926670 22926710 41 CATCACGGACAAGCACTTCTATTTCAACAAGACCAAAGGAT CATCACGGACAAGCACTTATATTTCAACAAGACCAAAGGAT < 41bp 0.785756915974216 0.518668294629231 0.13128796 0.07420313 prediction 0.534177242689972 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926690 chr16:22926688 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_5757 0 0 0 14 22926667 22926688 mRNA hsa-miR-373 HS3ST2 miRanda miRanda
2192 chr16 22926688 22926688 1 + C A UCEC 22926690 + 22926670 22926710 41 CATCACGGACAAGCACTTCTATTTCAACAAGACCAAAGGAT CATCACGGACAAGCACTTATATTTCAACAAGACCAAAGGAT < 41bp 0.785756915974216 0.518668294629231 0.13128796 0.07420313 prediction 0.534177242689972 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926690 chr16:22926688 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_5757 0 0 0 14 22926666 22926688 mRNA hsa-miR-520e HS3ST2 miRanda miRanda
2192 chr16 22926688 22926688 1 + C A UCEC 22926690 + 22926670 22926710 41 CATCACGGACAAGCACTTCTATTTCAACAAGACCAAAGGAT CATCACGGACAAGCACTTATATTTCAACAAGACCAAAGGAT < 41bp 0.785756915974216 0.518668294629231 0.13128796 0.07420313 prediction 0.534177242689972 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926690 chr16:22926688 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_5757 0 0 0 14 22926667 22926688 mRNA hsa-miR-520a-3p HS3ST2 miRanda miRanda
2192 chr16 22926688 22926688 1 + C A UCEC 22926690 + 22926670 22926710 41 CATCACGGACAAGCACTTCTATTTCAACAAGACCAAAGGAT CATCACGGACAAGCACTTATATTTCAACAAGACCAAAGGAT < 41bp 0.785756915974216 0.518668294629231 0.13128796 0.07420313 prediction 0.534177242689972 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926690 chr16:22926688 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_5757 0 0 0 14 22926666 22926688 mRNA hsa-miR-520b HS3ST2 miRanda miRanda
2192 chr16 22926688 22926688 1 + C A UCEC 22926690 + 22926670 22926710 41 CATCACGGACAAGCACTTCTATTTCAACAAGACCAAAGGAT CATCACGGACAAGCACTTATATTTCAACAAGACCAAAGGAT < 41bp 0.785756915974216 0.518668294629231 0.13128796 0.07420313 prediction 0.534177242689972 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926690 chr16:22926688 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_5757 0 0 0 14 22926668 22926688 mRNA hsa-miR-520c-3p HS3ST2 miRanda miRanda
2192 chr16 22926688 22926688 1 + C A UCEC 22926690 + 22926670 22926710 41 CATCACGGACAAGCACTTCTATTTCAACAAGACCAAAGGAT CATCACGGACAAGCACTTATATTTCAACAAGACCAAAGGAT < 41bp 0.785756915974216 0.518668294629231 0.13128796 0.07420313 prediction 0.534177242689972 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926690 chr16:22926688 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_5757 0 0 0 14 22926667 22926688 mRNA hsa-miR-520d-3p HS3ST2 miRanda miRanda
2192 chr16 22926688 22926688 1 + C A UCEC 22926690 + 22926670 22926710 41 CATCACGGACAAGCACTTCTATTTCAACAAGACCAAAGGAT CATCACGGACAAGCACTTATATTTCAACAAGACCAAAGGAT < 41bp 0.785756915974216 0.518668294629231 0.13128796 0.07420313 prediction 0.534177242689972 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926690 chr16:22926688 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_5757 0 0 0 14 22926679 22926699 mRNA hsa-miR-653 HS3ST2 miRanda miRanda
2192 chr16 22926688 22926688 1 + C A UCEC 22926690 + 22926670 22926710 41 CATCACGGACAAGCACTTCTATTTCAACAAGACCAAAGGAT CATCACGGACAAGCACTTATATTTCAACAAGACCAAAGGAT < 41bp 0.785756915974216 0.518668294629231 0.13128796 0.07420313 prediction 0.534177242689972 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926690 chr16:22926688 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_5757 0 0 0 14 22926670 22926688 mRNA hsa-miR-302e HS3ST2 miRanda miRanda
2192 chr1 233807126 233807126 1 + C T UCEC 233807128 + 233807108 233807148 41 TGTGAAGAAGGACAAGGACGAGGATCAGGTGCACATCATAG TGTGAAGAAGGACAAGGATGAGGATCAGGTGCACATCATAG < 41bp 0.770171179971428 0.50324358986037 0.26400536 0.21124569 prediction 0.533855180222117 Functional Loss - KCNK1 ENSG00000135750 CDS Human protein_coding chr1:233807128 chr1:233807126 synonymous SNV . 0 19 hm1A_associated_SNPs_5767 0 0 1 3 233807120 233807144 mRNA hsa-miR-25 KCNK1 miRanda miRanda
2192 chr1 233807126 233807126 1 + C T UCEC 233807128 + 233807108 233807148 41 TGTGAAGAAGGACAAGGACGAGGATCAGGTGCACATCATAG TGTGAAGAAGGACAAGGATGAGGATCAGGTGCACATCATAG < 41bp 0.770171179971428 0.50324358986037 0.26400536 0.21124569 prediction 0.533855180222117 Functional Loss - KCNK1 ENSG00000135750 CDS Human protein_coding chr1:233807128 chr1:233807126 synonymous SNV . 0 19 hm1A_associated_SNPs_5767 0 0 1 3 233807120 233807144 mRNA hsa-miR-92a KCNK1 miRanda miRanda
2192 chr1 233807126 233807126 1 + C T UCEC 233807128 + 233807108 233807148 41 TGTGAAGAAGGACAAGGACGAGGATCAGGTGCACATCATAG TGTGAAGAAGGACAAGGATGAGGATCAGGTGCACATCATAG < 41bp 0.770171179971428 0.50324358986037 0.26400536 0.21124569 prediction 0.533855180222117 Functional Loss - KCNK1 ENSG00000135750 CDS Human protein_coding chr1:233807128 chr1:233807126 synonymous SNV . 0 19 hm1A_associated_SNPs_5767 0 0 1 3 233807120 233807144 mRNA hsa-miR-92b KCNK1 miRanda miRanda
2192 chr13 33635273 33635273 1 + C T PAAD 33635275 + 33635255 33635295 41 ACGTCAAGCTTTGGATAACGATGAATGAGCCGTATACAAGG ACGTCAAGCTTTGGATAATGATGAATGAGCCGTATACAAGG < 41bp 0.804994659570391 0.538910587052426 0.31075287 0.1913372 prediction 0.53216814503593 Functional Loss - KL ENSG00000133116 CDS Human protein_coding chr13:33635275 chr13:33635273 nonsynonymous SNV 0.500 4 19 hm1A_associated_SNPs_5804 0 0 0 1 33635265 33635286 mRNA hsa-miR-24 KL miRanda miRanda
2192 chr17 76167915 76167915 1 + C A UCEC 76167917 + 76167897 76167937 41 TCCGGACCCCAACACTGCCTACGCCTCCTACCCAGGTGCAT TCCGGACCCCAACACTGCATACGCCTCCTACCCAGGTGCAT < 41bp 0.77931165259346 0.513310330348852 0.23240206 0.25578657 prediction 0.532002644489216 Functional Loss - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167917 chr17:76167915 nonsynonymous SNV 0.416 0 19 hm1A_associated_SNPs_5809 0 0 1 4 76167895 76167916 mRNA hsa-miR-34a SYNGR2 miRanda miRanda
2192 chr17 76167915 76167915 1 + C A UCEC 76167917 + 76167897 76167937 41 TCCGGACCCCAACACTGCCTACGCCTCCTACCCAGGTGCAT TCCGGACCCCAACACTGCATACGCCTCCTACCCAGGTGCAT < 41bp 0.77931165259346 0.513310330348852 0.23240206 0.25578657 prediction 0.532002644489216 Functional Loss - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167917 chr17:76167915 nonsynonymous SNV 0.416 0 19 hm1A_associated_SNPs_5809 0 0 1 4 76167894 76167916 mRNA hsa-miR-34c-5p SYNGR2 miRanda miRanda
2192 chr17 76167915 76167915 1 + C A UCEC 76167917 + 76167897 76167937 41 TCCGGACCCCAACACTGCCTACGCCTCCTACCCAGGTGCAT TCCGGACCCCAACACTGCATACGCCTCCTACCCAGGTGCAT < 41bp 0.77931165259346 0.513310330348852 0.23240206 0.25578657 prediction 0.532002644489216 Functional Loss - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167917 chr17:76167915 nonsynonymous SNV 0.416 0 19 hm1A_associated_SNPs_5809 0 0 1 4 76167895 76167916 mRNA hsa-miR-449a SYNGR2 miRanda miRanda
2192 chr17 76167915 76167915 1 + C A UCEC 76167917 + 76167897 76167937 41 TCCGGACCCCAACACTGCCTACGCCTCCTACCCAGGTGCAT TCCGGACCCCAACACTGCATACGCCTCCTACCCAGGTGCAT < 41bp 0.77931165259346 0.513310330348852 0.23240206 0.25578657 prediction 0.532002644489216 Functional Loss - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167917 chr17:76167915 nonsynonymous SNV 0.416 0 19 hm1A_associated_SNPs_5809 0 0 1 4 76167895 76167916 mRNA hsa-miR-449b SYNGR2 miRanda miRanda
2192 chr1 166974588 166974588 1 + C T COAD 166974590 + 166974570 166974610 41 CCCTCTAAGACTTGGATTCGAAGCCTCCTAGATGTGGCCAT CCCTCTAAGACTTGGATTTGAAGCCTCCTAGATGTGGCCAT < 41bp 0.7719963084714 0.506231925337876 0.2861259 0.10590017 prediction 0.531528766267048 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166974590 chr1:166974588 stopgain 0.999 0 19 hm1A_associated_SNPs_5817 0 0 0 1 166974576 166974599 mRNA hsa-miR-708 MAEL miRanda miRanda
2192 chr13 37014186 37014186 1 + C T UCEC 37014188 + 37014168 37014208 41 GATGATACATACACAAAACGACAACTGTTAAAAATGGAACA GATGATACATACACAAAATGACAACTGTTAAAAATGGAACA < 41bp 0.767791651169597 0.503192957945539 0.07146475 0.04957664 prediction 0.529197386448116 Functional Loss - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37014188 chr13:37014186 stopgain 0.387 1 19 hm1A_associated_SNPs_5887 0 0 0 5 37014177 37014197 mRNA hsa-miR-212 CCNA1 miRanda miRanda
2192 chr13 37014186 37014186 1 + C T UCEC 37014188 + 37014168 37014208 41 GATGATACATACACAAAACGACAACTGTTAAAAATGGAACA GATGATACATACACAAAATGACAACTGTTAAAAATGGAACA < 41bp 0.767791651169597 0.503192957945539 0.07146475 0.04957664 prediction 0.529197386448116 Functional Loss - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37014188 chr13:37014186 stopgain 0.387 1 19 hm1A_associated_SNPs_5887 0 0 0 5 37014176 37014197 mRNA hsa-miR-132 CCNA1 miRanda miRanda
2192 chr13 37014186 37014186 1 + C T UCEC 37014188 + 37014168 37014208 41 GATGATACATACACAAAACGACAACTGTTAAAAATGGAACA GATGATACATACACAAAATGACAACTGTTAAAAATGGAACA < 41bp 0.767791651169597 0.503192957945539 0.07146475 0.04957664 prediction 0.529197386448116 Functional Loss - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37014188 chr13:37014186 stopgain 0.387 1 19 hm1A_associated_SNPs_5887 0 0 0 5 37014184 37014207 mRNA hsa-miR-136 CCNA1 miRanda miRanda
2192 chr13 37014186 37014186 1 + C T UCEC 37014188 + 37014168 37014208 41 GATGATACATACACAAAACGACAACTGTTAAAAATGGAACA GATGATACATACACAAAATGACAACTGTTAAAAATGGAACA < 41bp 0.767791651169597 0.503192957945539 0.07146475 0.04957664 prediction 0.529197386448116 Functional Loss - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37014188 chr13:37014186 stopgain 0.387 1 19 hm1A_associated_SNPs_5887 0 0 0 5 37014178 37014199 mRNA hsa-miR-194 CCNA1 miRanda miRanda
2192 chr13 37014186 37014186 1 + C T UCEC 37014188 + 37014168 37014208 41 GATGATACATACACAAAACGACAACTGTTAAAAATGGAACA GATGATACATACACAAAATGACAACTGTTAAAAATGGAACA < 41bp 0.767791651169597 0.503192957945539 0.07146475 0.04957664 prediction 0.529197386448116 Functional Loss - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37014188 chr13:37014186 stopgain 0.387 1 19 hm1A_associated_SNPs_5887 0 0 0 5 37014173 37014195 mRNA hsa-miR-382 CCNA1 miRanda miRanda
2192 chr1 156180174 156180174 1 + C T BLCA 156180176 + 156180156 156180196 41 GGTGGGCTATGAGAGCCTCAAGAAACTCAGCCTCCGACCTG GGTGGGCTATGAGAGCCTTAAGAAACTCAGCCTCCGACCTG < 41bp 0.76327068193623 0.479999200706435 0.31220585 0.31266707 prediction 0.526541363872459 Functional Loss - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156180176 chr1:156180174 synonymous SNV . 0 19 hm1A_associated_SNPs_5953 0 0 0 1 156180169 156180190 mRNA hsa-miR-485-5p SLC25A44 miRanda miRanda
2192 chr3 128127069 128127069 1 + C T SKCM 128127071 + 128127051 128127091 41 TTTCAAGCGTTATGTCTTCGACACCCACAAGCGCATGGTTC TTTCAAGCGTTATGTCTTTGACACCCACAAGCGCATGGTTC < 41bp 0.763058933796509 0.493376246594569 0.4517135 0.19048518 prediction 0.526117867593018 Functional Loss - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:128127071 chr3:128127069 synonymous SNV . 0 19 hm1A_associated_SNPs_5964 0 0 0 1 128127047 128127070 mRNA hsa-miR-494 EEFSEC miRanda miRanda
2192 chr2 133402693 133402693 1 - G A LUSC 133402691 - 133402671 133402711 41 GGGCATCCAGCATACGGCCAATGTCACAACAATCAGCCCTG GGGCATCCAGCATACGGCTAATGTCACAACAATCAGCCCTG < 41bp 0.796386700957704 0.533566053126645 0.2114949 0.14951858 prediction 0.525641295662119 Functional Loss - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133402691 chr2:133402693 synonymous SNV . 0 19 hm1A_associated_SNPs_5977 0 0 1 1 133402682 133402703 mRNA hsa-miR-758 LYPD1 miRanda miRanda
2192 chr15 66783261 66783261 1 + C A rs14303 66783263 + 66783243 66783283 41 TGTGGGTAGTCATTCTTACAATTGCACTGCTGTTCCTGCTC TGTGGGTAGTCATTCTTAAAATTGCACTGCTGTTCCTGCTC < 41bp 0.761925412672639 0.430508518838617 0.053180426 0.04920882 prediction 0.523850825345278 Functional Loss - MAP2K1 ENSG00000261351 ncRNA_intronic Human antisense chr15:66783263 chr15:66783261 . . 0 19 hm1A_associated_SNPs_6031 2 0 1 9 66783249 66783272 mRNA hsa-miR-148a MAP2K1 miRanda miRanda
2192 chr15 66783261 66783261 1 + C A rs14303 66783263 + 66783243 66783283 41 TGTGGGTAGTCATTCTTACAATTGCACTGCTGTTCCTGCTC TGTGGGTAGTCATTCTTAAAATTGCACTGCTGTTCCTGCTC < 41bp 0.761925412672639 0.430508518838617 0.053180426 0.04920882 prediction 0.523850825345278 Functional Loss - MAP2K1 ENSG00000261351 ncRNA_intronic Human antisense chr15:66783263 chr15:66783261 . . 0 19 hm1A_associated_SNPs_6031 2 0 1 9 66783249 66783271 mRNA hsa-miR-130a MAP2K1 miRanda miRanda
2192 chr15 66783261 66783261 1 + C A rs14303 66783263 + 66783243 66783283 41 TGTGGGTAGTCATTCTTACAATTGCACTGCTGTTCCTGCTC TGTGGGTAGTCATTCTTAAAATTGCACTGCTGTTCCTGCTC < 41bp 0.761925412672639 0.430508518838617 0.053180426 0.04920882 prediction 0.523850825345278 Functional Loss - MAP2K1 ENSG00000261351 ncRNA_intronic Human antisense chr15:66783263 chr15:66783261 . . 0 19 hm1A_associated_SNPs_6031 2 0 1 9 66783250 66783272 mRNA hsa-miR-152 MAP2K1 miRanda miRanda
2192 chr15 66783261 66783261 1 + C A rs14303 66783263 + 66783243 66783283 41 TGTGGGTAGTCATTCTTACAATTGCACTGCTGTTCCTGCTC TGTGGGTAGTCATTCTTAAAATTGCACTGCTGTTCCTGCTC < 41bp 0.761925412672639 0.430508518838617 0.053180426 0.04920882 prediction 0.523850825345278 Functional Loss - MAP2K1 ENSG00000261351 ncRNA_intronic Human antisense chr15:66783263 chr15:66783261 . . 0 19 hm1A_associated_SNPs_6031 2 0 1 9 66783249 66783271 mRNA hsa-miR-301a MAP2K1 miRanda miRanda
2192 chr15 66783261 66783261 1 + C A rs14303 66783263 + 66783243 66783283 41 TGTGGGTAGTCATTCTTACAATTGCACTGCTGTTCCTGCTC TGTGGGTAGTCATTCTTAAAATTGCACTGCTGTTCCTGCTC < 41bp 0.761925412672639 0.430508518838617 0.053180426 0.04920882 prediction 0.523850825345278 Functional Loss - MAP2K1 ENSG00000261351 ncRNA_intronic Human antisense chr15:66783263 chr15:66783261 . . 0 19 hm1A_associated_SNPs_6031 2 0 1 9 66783249 66783271 mRNA hsa-miR-130b MAP2K1 miRanda miRanda
2192 chr15 66783261 66783261 1 + C A rs14303 66783263 + 66783243 66783283 41 TGTGGGTAGTCATTCTTACAATTGCACTGCTGTTCCTGCTC TGTGGGTAGTCATTCTTAAAATTGCACTGCTGTTCCTGCTC < 41bp 0.761925412672639 0.430508518838617 0.053180426 0.04920882 prediction 0.523850825345278 Functional Loss - MAP2K1 ENSG00000261351 ncRNA_intronic Human antisense chr15:66783263 chr15:66783261 . . 0 19 hm1A_associated_SNPs_6031 2 0 1 9 66783249 66783272 mRNA hsa-miR-148b MAP2K1 miRanda miRanda
2192 chr15 66783261 66783261 1 + C A rs14303 66783263 + 66783243 66783283 41 TGTGGGTAGTCATTCTTACAATTGCACTGCTGTTCCTGCTC TGTGGGTAGTCATTCTTAAAATTGCACTGCTGTTCCTGCTC < 41bp 0.761925412672639 0.430508518838617 0.053180426 0.04920882 prediction 0.523850825345278 Functional Loss - MAP2K1 ENSG00000261351 ncRNA_intronic Human antisense chr15:66783263 chr15:66783261 . . 0 19 hm1A_associated_SNPs_6031 2 0 1 9 66783249 66783271 mRNA hsa-miR-454 MAP2K1 miRanda miRanda
2192 chr15 66783261 66783261 1 + C A rs14303 66783263 + 66783243 66783283 41 TGTGGGTAGTCATTCTTACAATTGCACTGCTGTTCCTGCTC TGTGGGTAGTCATTCTTAAAATTGCACTGCTGTTCCTGCTC < 41bp 0.761925412672639 0.430508518838617 0.053180426 0.04920882 prediction 0.523850825345278 Functional Loss - MAP2K1 ENSG00000261351 ncRNA_intronic Human antisense chr15:66783263 chr15:66783261 . . 0 19 hm1A_associated_SNPs_6031 2 0 1 9 66783258 66783281 mRNA hsa-miR-873 MAP2K1 miRanda miRanda
2192 chr15 66783261 66783261 1 + C A rs14303 66783263 + 66783243 66783283 41 TGTGGGTAGTCATTCTTACAATTGCACTGCTGTTCCTGCTC TGTGGGTAGTCATTCTTAAAATTGCACTGCTGTTCCTGCTC < 41bp 0.761925412672639 0.430508518838617 0.053180426 0.04920882 prediction 0.523850825345278 Functional Loss - MAP2K1 ENSG00000261351 ncRNA_intronic Human antisense chr15:66783263 chr15:66783261 . . 0 19 hm1A_associated_SNPs_6031 2 0 1 9 66783249 66783271 mRNA hsa-miR-301b MAP2K1 miRanda miRanda
2192 chr5 110411719 110411719 1 + C A UCEC 110411721 + 110411701 110411741 41 TGTCTGGAACAAGTGTCACAATTACAAGGATTGTGGCGTCG TGTCTGGAACAAGTGTCAAAATTACAAGGATTGTGGCGTCG < 41bp 0.765140562442547 0.50363496009032 0.12717268 0.13985193 prediction 0.523011204704453 Functional Loss - TSLP ENSG00000145777 CDS Human protein_coding chr5:110411721 chr5:110411719 nonsynonymous SNV 0.002 0 19 hm1A_associated_SNPs_6060 0 0 1 1 110411699 110411722 mRNA hsa-miR-758 TSLP miRanda miRanda
2192 chr9 93650880 93650880 1 + C T STAD 93650882 + 93650862 93650902 41 GTGTCCAAGAGAGATGTACGATCTCATGAATCTGTGCTGGA GTGTCCAAGAGAGATGTATGATCTCATGAATCTGTGCTGGA < 41bp 0.807229027618983 0.545928075941236 0.3321516 0.14809829 prediction 0.522601903355494 Functional Loss - SYK ENSG00000165025 CDS Human protein_coding chr9:93650882 chr9:93650880 synonymous SNV . 0 19 hm1A_associated_SNPs_6073 0 0 0 1 93650863 93650884 mRNA hsa-miR-487b SYK miRanda miRanda
2192 chr8 96044275 96044275 1 + C T STAD 96044277 + 96044257 96044297 41 CTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACTGAG CTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACTGAG < 41bp 0.783525585937031 0.522484777792087 0.16378382 0.094423056 prediction 0.522081616289886 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044277 chr8:96044275 stopgain 0.994 0 19 hm1A_associated_SNPs_6093 0 0 1 8 96044272 96044294 mRNA hsa-miR-19a C8orf38 miRanda miRanda
2192 chr8 96044275 96044275 1 + C T STAD 96044277 + 96044257 96044297 41 CTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACTGAG CTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACTGAG < 41bp 0.783525585937031 0.522484777792087 0.16378382 0.094423056 prediction 0.522081616289886 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044277 chr8:96044275 stopgain 0.994 0 19 hm1A_associated_SNPs_6093 0 0 1 8 96044272 96044294 mRNA hsa-miR-19b C8orf38 miRanda miRanda
2192 chr8 96044275 96044275 1 + C T STAD 96044277 + 96044257 96044297 41 CTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACTGAG CTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACTGAG < 41bp 0.783525585937031 0.522484777792087 0.16378382 0.094423056 prediction 0.522081616289886 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044277 chr8:96044275 stopgain 0.994 0 19 hm1A_associated_SNPs_6093 0 0 1 8 96044274 96044296 mRNA hsa-miR-148a C8orf38 miRanda miRanda
2192 chr8 96044275 96044275 1 + C T STAD 96044277 + 96044257 96044297 41 CTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACTGAG CTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACTGAG < 41bp 0.783525585937031 0.522484777792087 0.16378382 0.094423056 prediction 0.522081616289886 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044277 chr8:96044275 stopgain 0.994 0 19 hm1A_associated_SNPs_6093 0 0 1 8 96044275 96044296 mRNA hsa-miR-152 C8orf38 miRanda miRanda
2192 chr8 96044275 96044275 1 + C T STAD 96044277 + 96044257 96044297 41 CTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACTGAG CTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACTGAG < 41bp 0.783525585937031 0.522484777792087 0.16378382 0.094423056 prediction 0.522081616289886 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044277 chr8:96044275 stopgain 0.994 0 19 hm1A_associated_SNPs_6093 0 0 1 8 96044273 96044295 mRNA hsa-miR-301a C8orf38 miRanda miRanda
2192 chr8 96044275 96044275 1 + C T STAD 96044277 + 96044257 96044297 41 CTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACTGAG CTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACTGAG < 41bp 0.783525585937031 0.522484777792087 0.16378382 0.094423056 prediction 0.522081616289886 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044277 chr8:96044275 stopgain 0.994 0 19 hm1A_associated_SNPs_6093 0 0 1 8 96044274 96044296 mRNA hsa-miR-148b C8orf38 miRanda miRanda
2192 chr8 96044275 96044275 1 + C T STAD 96044277 + 96044257 96044297 41 CTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACTGAG CTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACTGAG < 41bp 0.783525585937031 0.522484777792087 0.16378382 0.094423056 prediction 0.522081616289886 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044277 chr8:96044275 stopgain 0.994 0 19 hm1A_associated_SNPs_6093 0 0 1 8 96044270 96044295 mRNA hsa-miR-454 C8orf38 miRanda miRanda
2192 chr8 96044275 96044275 1 + C T STAD 96044277 + 96044257 96044297 41 CTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACTGAG CTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACTGAG < 41bp 0.783525585937031 0.522484777792087 0.16378382 0.094423056 prediction 0.522081616289886 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044277 chr8:96044275 stopgain 0.994 0 19 hm1A_associated_SNPs_6093 0 0 1 8 96044273 96044295 mRNA hsa-miR-301b C8orf38 miRanda miRanda
2192 chr1 150316964 150316964 1 + C T STAD 150316966 + 150316946 150316986 41 AGCAGAACAGAGAAAGGTCAAGAAAATTAAAAAGCTTAAAG AGCAGAACAGAGAAAGGTTAAGAAAATTAAAAAGCTTAAAG < 41bp 0.785850938162502 0.525849953325033 0.114148885 0.13911512 prediction 0.520001969674937 Functional Loss - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150316966 chr1:150316964 synonymous SNV . 0 19 hm1A_associated_SNPs_6159 0 0 1 3 150316946 150316966 mRNA hsa-miR-192 PRPF3 miRanda miRanda
2192 chr1 150316964 150316964 1 + C T STAD 150316966 + 150316946 150316986 41 AGCAGAACAGAGAAAGGTCAAGAAAATTAAAAAGCTTAAAG AGCAGAACAGAGAAAGGTTAAGAAAATTAAAAAGCTTAAAG < 41bp 0.785850938162502 0.525849953325033 0.114148885 0.13911512 prediction 0.520001969674937 Functional Loss - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150316966 chr1:150316964 synonymous SNV . 0 19 hm1A_associated_SNPs_6159 0 0 1 3 150316946 150316966 mRNA hsa-miR-215 PRPF3 miRanda miRanda
2192 chr1 150316964 150316964 1 + C T STAD 150316966 + 150316946 150316986 41 AGCAGAACAGAGAAAGGTCAAGAAAATTAAAAAGCTTAAAG AGCAGAACAGAGAAAGGTTAAGAAAATTAAAAAGCTTAAAG < 41bp 0.785850938162502 0.525849953325033 0.114148885 0.13911512 prediction 0.520001969674937 Functional Loss - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150316966 chr1:150316964 synonymous SNV . 0 19 hm1A_associated_SNPs_6159 0 0 1 3 150316954 150316974 mRNA hsa-miR-590-3p PRPF3 miRanda miRanda
2192 chr1 169801601 169801601 1 + C T UCEC 169801603 + 169801583 169801623 41 ATCAACTCATCAACCTATCAATACTGTTGAAGCGTCTCTTT ATCAACTCATCAACCTATTAATACTGTTGAAGCGTCTCTTT < 41bp 0.759878146418731 0.491809518666458 0.2758531 0.15704638 prediction 0.519756292837462 Functional Loss - C1orf112 ENSG00000000460 CDS Human protein_coding chr1:169801603 chr1:169801601 nonsynonymous SNV 0.614 1 19 hm1A_associated_SNPs_6171 0 0 1 2 169801592 169801610 mRNA hsa-miR-144 C1orf112 miRanda miRanda
2192 chr1 169801601 169801601 1 + C T UCEC 169801603 + 169801583 169801623 41 ATCAACTCATCAACCTATCAATACTGTTGAAGCGTCTCTTT ATCAACTCATCAACCTATTAATACTGTTGAAGCGTCTCTTT < 41bp 0.759878146418731 0.491809518666458 0.2758531 0.15704638 prediction 0.519756292837462 Functional Loss - C1orf112 ENSG00000000460 CDS Human protein_coding chr1:169801603 chr1:169801601 nonsynonymous SNV 0.614 1 19 hm1A_associated_SNPs_6171 0 0 1 2 169801592 169801613 mRNA hsa-miR-421 C1orf112 miRanda miRanda
2192 chr14 90446902 90446902 1 + C T SKCM 90446904 + 90446884 90446924 41 GAAAATGATGCTGCTGCTCTATGAAGAAGGCCTCCGGGTTG GAAAATGATGCTGCTGCTTTATGAAGAAGGCCTCCGGGTTG < 41bp 0.773687678367761 0.514145061298583 0.16564605 0.14974132 prediction 0.519085234138356 Functional Loss - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90446904 chr14:90446902 synonymous SNV . 0 19 hm1A_associated_SNPs_6197 0 0 1 6 90446884 90446902 mRNA hsa-miR-16 TDP1 miRanda miRanda
2192 chr14 90446902 90446902 1 + C T SKCM 90446904 + 90446884 90446924 41 GAAAATGATGCTGCTGCTCTATGAAGAAGGCCTCCGGGTTG GAAAATGATGCTGCTGCTTTATGAAGAAGGCCTCCGGGTTG < 41bp 0.773687678367761 0.514145061298583 0.16564605 0.14974132 prediction 0.519085234138356 Functional Loss - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90446904 chr14:90446902 synonymous SNV . 0 19 hm1A_associated_SNPs_6197 0 0 1 6 90446884 90446902 mRNA hsa-miR-15b TDP1 miRanda miRanda
2192 chr14 90446902 90446902 1 + C T SKCM 90446904 + 90446884 90446924 41 GAAAATGATGCTGCTGCTCTATGAAGAAGGCCTCCGGGTTG GAAAATGATGCTGCTGCTTTATGAAGAAGGCCTCCGGGTTG < 41bp 0.773687678367761 0.514145061298583 0.16564605 0.14974132 prediction 0.519085234138356 Functional Loss - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90446904 chr14:90446902 synonymous SNV . 0 19 hm1A_associated_SNPs_6197 0 0 1 6 90446884 90446902 mRNA hsa-miR-195 TDP1 miRanda miRanda
2192 chr14 90446902 90446902 1 + C T SKCM 90446904 + 90446884 90446924 41 GAAAATGATGCTGCTGCTCTATGAAGAAGGCCTCCGGGTTG GAAAATGATGCTGCTGCTTTATGAAGAAGGCCTCCGGGTTG < 41bp 0.773687678367761 0.514145061298583 0.16564605 0.14974132 prediction 0.519085234138356 Functional Loss - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90446904 chr14:90446902 synonymous SNV . 0 19 hm1A_associated_SNPs_6197 0 0 1 6 90446888 90446908 mRNA hsa-miR-376a TDP1 miRanda miRanda
2192 chr14 90446902 90446902 1 + C T SKCM 90446904 + 90446884 90446924 41 GAAAATGATGCTGCTGCTCTATGAAGAAGGCCTCCGGGTTG GAAAATGATGCTGCTGCTTTATGAAGAAGGCCTCCGGGTTG < 41bp 0.773687678367761 0.514145061298583 0.16564605 0.14974132 prediction 0.519085234138356 Functional Loss - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90446904 chr14:90446902 synonymous SNV . 0 19 hm1A_associated_SNPs_6197 0 0 1 6 90446884 90446902 mRNA hsa-miR-424 TDP1 miRanda miRanda
2192 chr14 90446902 90446902 1 + C T SKCM 90446904 + 90446884 90446924 41 GAAAATGATGCTGCTGCTCTATGAAGAAGGCCTCCGGGTTG GAAAATGATGCTGCTGCTTTATGAAGAAGGCCTCCGGGTTG < 41bp 0.773687678367761 0.514145061298583 0.16564605 0.14974132 prediction 0.519085234138356 Functional Loss - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90446904 chr14:90446902 synonymous SNV . 0 19 hm1A_associated_SNPs_6197 0 0 1 6 90446885 90446908 mRNA hsa-miR-376b TDP1 miRanda miRanda
2192 chr17 4805255 4805255 1 + C T UCEC 4805257 + 4805237 4805277 41 GCGAACAGTTCTGCCAATCGAAGGGGAAGTAGGTGACCTCC GCGAACAGTTCTGCCAATTGAAGGGGAAGTAGGTGACCTCC < 41bp 0.762474446707494 0.503461889408223 0.5160092 0.32273 prediction 0.518025114598541 Functional Loss - CHRNE ENSG00000108556 CDS Human protein_coding chr17:4805257 chr17:4805255 nonsynonymous SNV 1.000 5 19 hm1A_associated_SNPs_6231 0 0 0 1 4805252 4805273 mRNA hsa-miR-197 C17orf107 miRanda miRanda
2192 chr2 182780880 182780880 1 + C T SKCM 182780882 + 182780862 182780902 41 CACGGCTTGCTCCACCACCAATGTCTCAGTCTACCTGTTCC CACGGCTTGCTCCACCACTAATGTCTCAGTCTACCTGTTCC < 41bp 0.761555892117476 0.502655802262736 0.10959527 0.085315645 prediction 0.51780017970948 Functional Loss - SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182780882 chr2:182780880 nonsynonymous SNV 0.024 0 19 hm1A_associated_SNPs_6238 0 0 1 1 182780879 182780897 mRNA hsa-miR-379 SSFA2 miRanda miRanda
2192 chr19 50906815 50906815 1 + C T CESC 50906817 + 50906797 50906837 41 TTACAACATCCAGAACTTCGACCTTCCGTACCTCATCTCTC TTACAACATCCAGAACTTTGACCTTCCGTACCTCATCTCTC < 41bp 0.765377525580353 0.506915732030664 0.4819871 0.49662778 prediction 0.516923587099378 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906817 chr19:50906815 synonymous SNV . 0 19 hm1A_associated_SNPs_6273 1 0 1 1 50906808 50906831 mRNA hsa-miR-98 POLD1 miRanda miRanda
2192 chr11 36484211 36484211 1 + C T LUSC 36484213 + 36484193 36484233 41 TGAGCCCAACATCACTGACAACCCTGACGGACTGGAGGAGG TGAGCCCAACATCACTGATAACCCTGACGGACTGGAGGAGG < 41bp 0.758017312198691 0.49197056663967 0.59223336 0.47155222 prediction 0.516034624397382 Functional Loss - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36484213 chr11:36484211 synonymous SNV . 0 19 hm1A_associated_SNPs_6317 0 0 1 1 36484186 36484211 mRNA hsa-miR-433 PRR5L miRanda miRanda
2192 chr16 68293398 68293398 1 + C T PAAD 68293400 + 68293380 68293420 41 AATCTGCTTTGGTGACGGCGATGGTACTGTGAACTTGAAGA AATCTGCTTTGGTGACGGTGATGGTACTGTGAACTTGAAGA < 41bp 0.840927123185673 0.582937007260971 0.24395782 0.1227572 prediction 0.515980231849405 Functional Loss - PLA2G15 ENSG00000103066 CDS Human protein_coding chr16:68293400 chr16:68293398 synonymous SNV . 0 19 hm1A_associated_SNPs_6319 0 0 0 3 68293392 68293412 mRNA hsa-miR-27a PLA2G15 miRanda miRanda
2192 chr16 68293398 68293398 1 + C T PAAD 68293400 + 68293380 68293420 41 AATCTGCTTTGGTGACGGCGATGGTACTGTGAACTTGAAGA AATCTGCTTTGGTGACGGTGATGGTACTGTGAACTTGAAGA < 41bp 0.840927123185673 0.582937007260971 0.24395782 0.1227572 prediction 0.515980231849405 Functional Loss - PLA2G15 ENSG00000103066 CDS Human protein_coding chr16:68293400 chr16:68293398 synonymous SNV . 0 19 hm1A_associated_SNPs_6319 0 0 0 3 68293390 68293410 mRNA hsa-miR-101 PLA2G15 miRanda miRanda
2192 chr16 68293398 68293398 1 + C T PAAD 68293400 + 68293380 68293420 41 AATCTGCTTTGGTGACGGCGATGGTACTGTGAACTTGAAGA AATCTGCTTTGGTGACGGTGATGGTACTGTGAACTTGAAGA < 41bp 0.840927123185673 0.582937007260971 0.24395782 0.1227572 prediction 0.515980231849405 Functional Loss - PLA2G15 ENSG00000103066 CDS Human protein_coding chr16:68293400 chr16:68293398 synonymous SNV . 0 19 hm1A_associated_SNPs_6319 0 0 0 3 68293392 68293412 mRNA hsa-miR-27b PLA2G15 miRanda miRanda
2192 chr20 18744383 18744383 1 + T C rs9139 18744382 + 18744362 18744402 41 TCCATGGCGGGGGTTCTCCAATACACTCACACTGTCCATGT TCCATGGCGGGGGTTCTCCAACACACTCACACTGTCCATGT < 41bp 0.758952285484621 0.501674859393123 0.13454908 0.1379784 prediction 0.514554852182997 Functional Loss - DTD1 ENSG00000125821 UTR3 Human protein_coding chr20:18744382 chr20:18744383 . . 0 22 hm1A_associated_SNPs_6378 0 0 1 1 18744373 18744396 mRNA hsa-miR-125a-3p DTD1 miRanda miRanda
2192 chr12 21661380 21661380 1 + C T SKCM 21661382 + 21661362 21661402 41 ACATTCAGATTCTTCTTCCAAAAACATAAAATGAAAGCTAC ACATTCAGATTCTTCTTCTAAAAACATAAAATGAAAGCTAC < 41bp 0.756907374179552 0.499385097164444 0.037969172 0.033093154 prediction 0.513814748359104 Functional Loss - GOLT1B ENSG00000111711 CDS Human protein_coding chr12:21661382 chr12:21661380 stopgain 0.993 1 19 hm1A_associated_SNPs_6410 0 0 1 3 21661366 21661386 mRNA hsa-miR-129-5p GOLT1B miRanda miRanda
2192 chr12 21661380 21661380 1 + C T SKCM 21661382 + 21661362 21661402 41 ACATTCAGATTCTTCTTCCAAAAACATAAAATGAAAGCTAC ACATTCAGATTCTTCTTCTAAAAACATAAAATGAAAGCTAC < 41bp 0.756907374179552 0.499385097164444 0.037969172 0.033093154 prediction 0.513814748359104 Functional Loss - GOLT1B ENSG00000111711 CDS Human protein_coding chr12:21661382 chr12:21661380 stopgain 0.993 1 19 hm1A_associated_SNPs_6410 0 0 1 3 21661356 21661381 mRNA hsa-miR-7 GOLT1B miRanda miRanda
2192 chr12 21661380 21661380 1 + C T SKCM 21661382 + 21661362 21661402 41 ACATTCAGATTCTTCTTCCAAAAACATAAAATGAAAGCTAC ACATTCAGATTCTTCTTCTAAAAACATAAAATGAAAGCTAC < 41bp 0.756907374179552 0.499385097164444 0.037969172 0.033093154 prediction 0.513814748359104 Functional Loss - GOLT1B ENSG00000111711 CDS Human protein_coding chr12:21661382 chr12:21661380 stopgain 0.993 1 19 hm1A_associated_SNPs_6410 0 0 1 3 21661375 21661395 mRNA hsa-miR-590-3p GOLT1B miRanda miRanda
2192 chr12 110927895 110927895 1 + C T UCEC 110927897 + 110927877 110927917 41 TTACTAAATAATTTTATGCAATCAATGTCAATTGAAGAACA TTACTAAATAATTTTATGTAATCAATGTCAATTGAAGAACA < 41bp 0.808934184241389 0.552592315781957 0.05409211 0.04721573 prediction 0.512683736918866 Functional Loss - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110927897 chr12:110927895 stopgain 0.991 1 19 hm1A_associated_SNPs_6456 0 0 1 8 110927878 110927899 mRNA hsa-miR-25 C12orf24 miRanda miRanda
2192 chr12 110927895 110927895 1 + C T UCEC 110927897 + 110927877 110927917 41 TTACTAAATAATTTTATGCAATCAATGTCAATTGAAGAACA TTACTAAATAATTTTATGTAATCAATGTCAATTGAAGAACA < 41bp 0.808934184241389 0.552592315781957 0.05409211 0.04721573 prediction 0.512683736918866 Functional Loss - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110927897 chr12:110927895 stopgain 0.991 1 19 hm1A_associated_SNPs_6456 0 0 1 8 110927875 110927899 mRNA hsa-miR-32 C12orf24 miRanda miRanda
2192 chr12 110927895 110927895 1 + C T UCEC 110927897 + 110927877 110927917 41 TTACTAAATAATTTTATGCAATCAATGTCAATTGAAGAACA TTACTAAATAATTTTATGTAATCAATGTCAATTGAAGAACA < 41bp 0.808934184241389 0.552592315781957 0.05409211 0.04721573 prediction 0.512683736918866 Functional Loss - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110927897 chr12:110927895 stopgain 0.991 1 19 hm1A_associated_SNPs_6456 0 0 1 8 110927878 110927899 mRNA hsa-miR-92a C12orf24 miRanda miRanda
2192 chr12 110927895 110927895 1 + C T UCEC 110927897 + 110927877 110927917 41 TTACTAAATAATTTTATGCAATCAATGTCAATTGAAGAACA TTACTAAATAATTTTATGTAATCAATGTCAATTGAAGAACA < 41bp 0.808934184241389 0.552592315781957 0.05409211 0.04721573 prediction 0.512683736918866 Functional Loss - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110927897 chr12:110927895 stopgain 0.991 1 19 hm1A_associated_SNPs_6456 0 0 1 8 110927876 110927897 mRNA hsa-miR-153 C12orf24 miRanda miRanda
2192 chr12 110927895 110927895 1 + C T UCEC 110927897 + 110927877 110927917 41 TTACTAAATAATTTTATGCAATCAATGTCAATTGAAGAACA TTACTAAATAATTTTATGTAATCAATGTCAATTGAAGAACA < 41bp 0.808934184241389 0.552592315781957 0.05409211 0.04721573 prediction 0.512683736918866 Functional Loss - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110927897 chr12:110927895 stopgain 0.991 1 19 hm1A_associated_SNPs_6456 0 0 1 8 110927878 110927899 mRNA hsa-miR-363 C12orf24 miRanda miRanda
2192 chr12 110927895 110927895 1 + C T UCEC 110927897 + 110927877 110927917 41 TTACTAAATAATTTTATGCAATCAATGTCAATTGAAGAACA TTACTAAATAATTTTATGTAATCAATGTCAATTGAAGAACA < 41bp 0.808934184241389 0.552592315781957 0.05409211 0.04721573 prediction 0.512683736918866 Functional Loss - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110927897 chr12:110927895 stopgain 0.991 1 19 hm1A_associated_SNPs_6456 0 0 1 8 110927878 110927899 mRNA hsa-miR-367 C12orf24 miRanda miRanda
2192 chr12 110927895 110927895 1 + C T UCEC 110927897 + 110927877 110927917 41 TTACTAAATAATTTTATGCAATCAATGTCAATTGAAGAACA TTACTAAATAATTTTATGTAATCAATGTCAATTGAAGAACA < 41bp 0.808934184241389 0.552592315781957 0.05409211 0.04721573 prediction 0.512683736918866 Functional Loss - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110927897 chr12:110927895 stopgain 0.991 1 19 hm1A_associated_SNPs_6456 0 0 1 8 110927876 110927897 mRNA hsa-miR-448 C12orf24 miRanda miRanda
2192 chr12 110927895 110927895 1 + C T UCEC 110927897 + 110927877 110927917 41 TTACTAAATAATTTTATGCAATCAATGTCAATTGAAGAACA TTACTAAATAATTTTATGTAATCAATGTCAATTGAAGAACA < 41bp 0.808934184241389 0.552592315781957 0.05409211 0.04721573 prediction 0.512683736918866 Functional Loss - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110927897 chr12:110927895 stopgain 0.991 1 19 hm1A_associated_SNPs_6456 0 0 1 8 110927878 110927899 mRNA hsa-miR-92b C12orf24 miRanda miRanda
2192 chr18 13737029 13737029 1 + C T PRAD 13737031 + 13737011 13737051 41 GAATTTTTGGAAAAGGTACGACAGAAGAAAAAACGTGATAT GAATTTTTGGAAAAGGTATGACAGAAGAAAAAACGTGATAT < 41bp 0.755732176866279 0.488369719604181 0.3623711 0.15978506 prediction 0.511464353732559 Functional Loss - RNMT ENSG00000101654 CDS Human protein_coding chr18:13737031 chr18:13737029 stopgain 0.973 1 19 hm1A_associated_SNPs_6507 0 0 1 1 13737010 13737031 mRNA hsa-miR-126 RNMT miRanda miRanda
2192 chr2 71190009 71190009 1 + C T UCEC 71190011 + 71189991 71190031 41 ACTGACGGACATGAGTTCCTATGCAGAGGCCTTGCGGGAGG ACTGACGGACATGAGTTCTTATGCAGAGGCCTTGCGGGAGG < 41bp 0.773372883788251 0.518452303275409 0.20619383 0.20275357 prediction 0.509841161025685 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71190011 chr2:71190009 synonymous SNV . 0 19 hm1A_associated_SNPs_6592 0 0 0 1 71189995 71190016 mRNA hsa-miR-153 ATP6V1B1 miRanda miRanda
2192 chr16 71419536 71419536 1 + C T KICH 71419538 + 71419518 71419558 41 CCTTTTGAAGGATCTGTACGAGAAAAACAAAAAGGTGAGCA CCTTTTGAAGGATCTGTATGAGAAAAACAAAAAGGTGAGCA < 41bp 0.760141566629723 0.505327190847581 0.22303197 0.11003104 prediction 0.509628751564284 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71419538 chr16:71419536 synonymous SNV . 0 19 hm1A_associated_SNPs_6604 0 0 0 2 71419531 71419551 mRNA hsa-miR-129-5p CALB2 miRanda miRanda
2192 chr16 71419536 71419536 1 + C T KICH 71419538 + 71419518 71419558 41 CCTTTTGAAGGATCTGTACGAGAAAAACAAAAAGGTGAGCA CCTTTTGAAGGATCTGTATGAGAAAAACAAAAAGGTGAGCA < 41bp 0.760141566629723 0.505327190847581 0.22303197 0.11003104 prediction 0.509628751564284 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71419538 chr16:71419536 synonymous SNV . 0 19 hm1A_associated_SNPs_6604 0 0 0 2 71419519 71419540 mRNA hsa-miR-487b CALB2 miRanda miRanda
2192 chr22 21965181 21965181 1 + C T SKCM 21965183 + 21965163 21965203 41 TAAGGGAGCCTTCAGAATCGAAATCAACTTTCCAGCAGAGT TAAGGGAGCCTTCAGAATTGAAATCAACTTTCCAGCAGAGT < 41bp 0.787570785762494 0.533163990678396 0.18815431 0.11021134 prediction 0.508813590168196 Functional Loss - UBE2L3 ENSG00000185651 CDS Human protein_coding chr22:21965183 chr22:21965181 synonymous SNV . 0 19 hm1A_associated_SNPs_6632 0 0 1 2 21965179 21965202 mRNA hsa-miR-370 UBE2L3 miRanda miRanda
2192 chr22 21965181 21965181 1 + C T SKCM 21965183 + 21965163 21965203 41 TAAGGGAGCCTTCAGAATCGAAATCAACTTTCCAGCAGAGT TAAGGGAGCCTTCAGAATTGAAATCAACTTTCCAGCAGAGT < 41bp 0.787570785762494 0.533163990678396 0.18815431 0.11021134 prediction 0.508813590168196 Functional Loss - UBE2L3 ENSG00000185651 CDS Human protein_coding chr22:21965183 chr22:21965181 synonymous SNV . 0 19 hm1A_associated_SNPs_6632 0 0 1 2 21965167 21965189 mRNA hsa-miR-876-5p UBE2L3 miRanda miRanda
2192 chr3 9730665 9730665 1 + C T UCEC 9730667 + 9730647 9730687 41 CACCACCAGCCTTGGCAGCGACTTCTCCCTGGTCATGGAGA CACCACCAGCCTTGGCAGTGACTTCTCCCTGGTCATGGAGA < 41bp 0.794782316843659 0.540443321603781 0.30459842 0.17756814 prediction 0.508677990479757 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9730667 chr3:9730665 synonymous SNV . 0 19 hm1A_associated_SNPs_6639 0 0 1 5 9730646 9730671 mRNA hsa-miR-302a MTMR14 miRanda miRanda
2192 chr3 9730665 9730665 1 + C T UCEC 9730667 + 9730647 9730687 41 CACCACCAGCCTTGGCAGCGACTTCTCCCTGGTCATGGAGA CACCACCAGCCTTGGCAGTGACTTCTCCCTGGTCATGGAGA < 41bp 0.794782316843659 0.540443321603781 0.30459842 0.17756814 prediction 0.508677990479757 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9730667 chr3:9730665 synonymous SNV . 0 19 hm1A_associated_SNPs_6639 0 0 1 5 9730648 9730671 mRNA hsa-miR-302b MTMR14 miRanda miRanda
2192 chr3 9730665 9730665 1 + C T UCEC 9730667 + 9730647 9730687 41 CACCACCAGCCTTGGCAGCGACTTCTCCCTGGTCATGGAGA CACCACCAGCCTTGGCAGTGACTTCTCCCTGGTCATGGAGA < 41bp 0.794782316843659 0.540443321603781 0.30459842 0.17756814 prediction 0.508677990479757 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9730667 chr3:9730665 synonymous SNV . 0 19 hm1A_associated_SNPs_6639 0 0 1 5 9730648 9730671 mRNA hsa-miR-302c MTMR14 miRanda miRanda
2192 chr3 9730665 9730665 1 + C T UCEC 9730667 + 9730647 9730687 41 CACCACCAGCCTTGGCAGCGACTTCTCCCTGGTCATGGAGA CACCACCAGCCTTGGCAGTGACTTCTCCCTGGTCATGGAGA < 41bp 0.794782316843659 0.540443321603781 0.30459842 0.17756814 prediction 0.508677990479757 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9730667 chr3:9730665 synonymous SNV . 0 19 hm1A_associated_SNPs_6639 0 0 1 5 9730649 9730671 mRNA hsa-miR-302d MTMR14 miRanda miRanda
2192 chr3 9730665 9730665 1 + C T UCEC 9730667 + 9730647 9730687 41 CACCACCAGCCTTGGCAGCGACTTCTCCCTGGTCATGGAGA CACCACCAGCCTTGGCAGTGACTTCTCCCTGGTCATGGAGA < 41bp 0.794782316843659 0.540443321603781 0.30459842 0.17756814 prediction 0.508677990479757 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9730667 chr3:9730665 synonymous SNV . 0 19 hm1A_associated_SNPs_6639 0 0 1 5 9730646 9730671 mRNA hsa-miR-373 MTMR14 miRanda miRanda
2192 chr4 8239292 8239292 1 + C T HNSC 8239294 + 8239274 8239314 41 GGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCTGCAACT GGCAGAGCACTTCTACCTTAAGGCCCTGTCGCTCTGCAACT < 41bp 0.754295188511931 0.499498024348994 0.29374075 0.35292324 prediction 0.508590377023862 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239294 chr4:8239292 synonymous SNV . 0 19 hm1A_associated_SNPs_6643 0 0 1 9 8239271 8239293 mRNA hsa-let-7a SH3TC1 miRanda miRanda
2192 chr4 8239292 8239292 1 + C T HNSC 8239294 + 8239274 8239314 41 GGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCTGCAACT GGCAGAGCACTTCTACCTTAAGGCCCTGTCGCTCTGCAACT < 41bp 0.754295188511931 0.499498024348994 0.29374075 0.35292324 prediction 0.508590377023862 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239294 chr4:8239292 synonymous SNV . 0 19 hm1A_associated_SNPs_6643 0 0 1 9 8239271 8239293 mRNA hsa-let-7b SH3TC1 miRanda miRanda
2192 chr4 8239292 8239292 1 + C T HNSC 8239294 + 8239274 8239314 41 GGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCTGCAACT GGCAGAGCACTTCTACCTTAAGGCCCTGTCGCTCTGCAACT < 41bp 0.754295188511931 0.499498024348994 0.29374075 0.35292324 prediction 0.508590377023862 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239294 chr4:8239292 synonymous SNV . 0 19 hm1A_associated_SNPs_6643 0 0 1 9 8239273 8239293 mRNA hsa-let-7c SH3TC1 miRanda miRanda
2192 chr4 8239292 8239292 1 + C T HNSC 8239294 + 8239274 8239314 41 GGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCTGCAACT GGCAGAGCACTTCTACCTTAAGGCCCTGTCGCTCTGCAACT < 41bp 0.754295188511931 0.499498024348994 0.29374075 0.35292324 prediction 0.508590377023862 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239294 chr4:8239292 synonymous SNV . 0 19 hm1A_associated_SNPs_6643 0 0 1 9 8239271 8239293 mRNA hsa-let-7d SH3TC1 miRanda miRanda
2192 chr4 8239292 8239292 1 + C T HNSC 8239294 + 8239274 8239314 41 GGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCTGCAACT GGCAGAGCACTTCTACCTTAAGGCCCTGTCGCTCTGCAACT < 41bp 0.754295188511931 0.499498024348994 0.29374075 0.35292324 prediction 0.508590377023862 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239294 chr4:8239292 synonymous SNV . 0 19 hm1A_associated_SNPs_6643 0 0 1 9 8239271 8239293 mRNA hsa-let-7e SH3TC1 miRanda miRanda
2192 chr4 8239292 8239292 1 + C T HNSC 8239294 + 8239274 8239314 41 GGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCTGCAACT GGCAGAGCACTTCTACCTTAAGGCCCTGTCGCTCTGCAACT < 41bp 0.754295188511931 0.499498024348994 0.29374075 0.35292324 prediction 0.508590377023862 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239294 chr4:8239292 synonymous SNV . 0 19 hm1A_associated_SNPs_6643 0 0 1 9 8239272 8239293 mRNA hsa-let-7f SH3TC1 miRanda miRanda
2192 chr4 8239292 8239292 1 + C T HNSC 8239294 + 8239274 8239314 41 GGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCTGCAACT GGCAGAGCACTTCTACCTTAAGGCCCTGTCGCTCTGCAACT < 41bp 0.754295188511931 0.499498024348994 0.29374075 0.35292324 prediction 0.508590377023862 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239294 chr4:8239292 synonymous SNV . 0 19 hm1A_associated_SNPs_6643 0 0 1 9 8239274 8239293 mRNA hsa-miR-98 SH3TC1 miRanda miRanda
2192 chr4 8239292 8239292 1 + C T HNSC 8239294 + 8239274 8239314 41 GGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCTGCAACT GGCAGAGCACTTCTACCTTAAGGCCCTGTCGCTCTGCAACT < 41bp 0.754295188511931 0.499498024348994 0.29374075 0.35292324 prediction 0.508590377023862 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239294 chr4:8239292 synonymous SNV . 0 19 hm1A_associated_SNPs_6643 0 0 1 9 8239270 8239293 mRNA hsa-let-7g SH3TC1 miRanda miRanda
2192 chr4 8239292 8239292 1 + C T HNSC 8239294 + 8239274 8239314 41 GGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCTGCAACT GGCAGAGCACTTCTACCTTAAGGCCCTGTCGCTCTGCAACT < 41bp 0.754295188511931 0.499498024348994 0.29374075 0.35292324 prediction 0.508590377023862 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239294 chr4:8239292 synonymous SNV . 0 19 hm1A_associated_SNPs_6643 0 0 1 9 8239271 8239293 mRNA hsa-let-7i SH3TC1 miRanda miRanda
2192 chr15 45713304 45713304 1 + C T BLCA 45713306 + 45713286 45713326 41 GTGAAACAAGAGCACTTTCTAAAATCACTTAAGACTGTAAA GTGAAACAAGAGCACTTTTTAAAATCACTTAAGACTGTAAA < 41bp 0.806862092870312 0.552685872389132 0.13308367 0.14048782 prediction 0.508352440962361 Functional Loss - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45713306 chr15:45713304 synonymous SNV . 0 19 hm1A_associated_SNPs_6655 0 0 1 7 45713277 45713304 mRNA hsa-miR-17 SPATA5L1 miRanda miRanda
2192 chr15 45713304 45713304 1 + C T BLCA 45713306 + 45713286 45713326 41 GTGAAACAAGAGCACTTTCTAAAATCACTTAAGACTGTAAA GTGAAACAAGAGCACTTTTTAAAATCACTTAAGACTGTAAA < 41bp 0.806862092870312 0.552685872389132 0.13308367 0.14048782 prediction 0.508352440962361 Functional Loss - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45713306 chr15:45713304 synonymous SNV . 0 19 hm1A_associated_SNPs_6655 0 0 1 7 45713282 45713304 mRNA hsa-miR-20a SPATA5L1 miRanda miRanda
2192 chr15 45713304 45713304 1 + C T BLCA 45713306 + 45713286 45713326 41 GTGAAACAAGAGCACTTTCTAAAATCACTTAAGACTGTAAA GTGAAACAAGAGCACTTTTTAAAATCACTTAAGACTGTAAA < 41bp 0.806862092870312 0.552685872389132 0.13308367 0.14048782 prediction 0.508352440962361 Functional Loss - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45713306 chr15:45713304 synonymous SNV . 0 19 hm1A_associated_SNPs_6655 0 0 1 7 45713282 45713304 mRNA hsa-miR-93 SPATA5L1 miRanda miRanda
2192 chr15 45713304 45713304 1 + C T BLCA 45713306 + 45713286 45713326 41 GTGAAACAAGAGCACTTTCTAAAATCACTTAAGACTGTAAA GTGAAACAAGAGCACTTTTTAAAATCACTTAAGACTGTAAA < 41bp 0.806862092870312 0.552685872389132 0.13308367 0.14048782 prediction 0.508352440962361 Functional Loss - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45713306 chr15:45713304 synonymous SNV . 0 19 hm1A_associated_SNPs_6655 0 0 1 7 45713277 45713304 mRNA hsa-miR-106a SPATA5L1 miRanda miRanda
2192 chr15 45713304 45713304 1 + C T BLCA 45713306 + 45713286 45713326 41 GTGAAACAAGAGCACTTTCTAAAATCACTTAAGACTGTAAA GTGAAACAAGAGCACTTTTTAAAATCACTTAAGACTGTAAA < 41bp 0.806862092870312 0.552685872389132 0.13308367 0.14048782 prediction 0.508352440962361 Functional Loss - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45713306 chr15:45713304 synonymous SNV . 0 19 hm1A_associated_SNPs_6655 0 0 1 7 45713284 45713304 mRNA hsa-miR-106b SPATA5L1 miRanda miRanda
2192 chr15 45713304 45713304 1 + C T BLCA 45713306 + 45713286 45713326 41 GTGAAACAAGAGCACTTTCTAAAATCACTTAAGACTGTAAA GTGAAACAAGAGCACTTTTTAAAATCACTTAAGACTGTAAA < 41bp 0.806862092870312 0.552685872389132 0.13308367 0.14048782 prediction 0.508352440962361 Functional Loss - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45713306 chr15:45713304 synonymous SNV . 0 19 hm1A_associated_SNPs_6655 0 0 1 7 45713282 45713304 mRNA hsa-miR-20b SPATA5L1 miRanda miRanda
2192 chr15 45713304 45713304 1 + C T BLCA 45713306 + 45713286 45713326 41 GTGAAACAAGAGCACTTTCTAAAATCACTTAAGACTGTAAA GTGAAACAAGAGCACTTTTTAAAATCACTTAAGACTGTAAA < 41bp 0.806862092870312 0.552685872389132 0.13308367 0.14048782 prediction 0.508352440962361 Functional Loss - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45713306 chr15:45713304 synonymous SNV . 0 19 hm1A_associated_SNPs_6655 0 0 1 7 45713282 45713304 mRNA hsa-miR-519d SPATA5L1 miRanda miRanda
2192 chr3 119325723 119325723 1 + C T HNSC 119325725 + 119325705 119325745 41 TTCTCCTCTTTGTCCCTTCGAATCCTAGCTGTGGGCAGCTA TTCTCCTCTTTGTCCCTTTGAATCCTAGCTGTGGGCAGCTA < 41bp 0.782707822193359 0.52858872684001 0.8407366 0.34072363 prediction 0.508238190706698 Functional Loss - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119325725 chr3:119325723 nonsynonymous SNV 0.647 1 19 hm1A_associated_SNPs_6663 0 0 0 1 119325723 119325745 mRNA hsa-miR-22 PLA1A miRanda miRanda
2192 chr3 148880502 148880502 1 + C T SKCM 148880504 + 148880484 148880524 41 GTGCTAAGGATGAAGATACAATTCCTCAGCTCTTGGTAGAC GTGCTAAGGATGAAGATATAATTCCTCAGCTCTTGGTAGAC < 41bp 0.753944456574516 0.46595991298131 0.059387445 0.053411156 prediction 0.507888913149032 Functional Loss - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148880504 chr3:148880502 nonsynonymous SNV 0.069 0 19 hm1A_associated_SNPs_6687 0 0 0 2 148880499 148880519 mRNA hsa-miR-335 HPS3 miRanda miRanda
2192 chr3 148880502 148880502 1 + C T SKCM 148880504 + 148880484 148880524 41 GTGCTAAGGATGAAGATACAATTCCTCAGCTCTTGGTAGAC GTGCTAAGGATGAAGATATAATTCCTCAGCTCTTGGTAGAC < 41bp 0.753944456574516 0.46595991298131 0.059387445 0.053411156 prediction 0.507888913149032 Functional Loss - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148880504 chr3:148880502 nonsynonymous SNV 0.069 0 19 hm1A_associated_SNPs_6687 0 0 0 2 148880489 148880509 mRNA hsa-miR-613 HPS3 miRanda miRanda
2192 chr5 128862027 128862027 1 + C T GBM 128862029 + 128862009 128862049 41 GAAAGTGGAAGAGGGAAACGATATTCATACAAATTACCTCA GAAAGTGGAAGAGGGAAATGATATTCATACAAATTACCTCA < 41bp 0.815874430488303 0.562219007226532 0.27629668 0.07113436 prediction 0.507310846523541 Functional Loss - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128862029 chr5:128862027 stopgain 0.991 1 19 hm1A_associated_SNPs_6713 0 0 0 6 128862027 128862049 mRNA hsa-let-7a ADAMTS19 miRanda miRanda
2192 chr5 128862027 128862027 1 + C T GBM 128862029 + 128862009 128862049 41 GAAAGTGGAAGAGGGAAACGATATTCATACAAATTACCTCA GAAAGTGGAAGAGGGAAATGATATTCATACAAATTACCTCA < 41bp 0.815874430488303 0.562219007226532 0.27629668 0.07113436 prediction 0.507310846523541 Functional Loss - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128862029 chr5:128862027 stopgain 0.991 1 19 hm1A_associated_SNPs_6713 0 0 0 6 128862027 128862049 mRNA hsa-let-7d ADAMTS19 miRanda miRanda
2192 chr5 128862027 128862027 1 + C T GBM 128862029 + 128862009 128862049 41 GAAAGTGGAAGAGGGAAACGATATTCATACAAATTACCTCA GAAAGTGGAAGAGGGAAATGATATTCATACAAATTACCTCA < 41bp 0.815874430488303 0.562219007226532 0.27629668 0.07113436 prediction 0.507310846523541 Functional Loss - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128862029 chr5:128862027 stopgain 0.991 1 19 hm1A_associated_SNPs_6713 0 0 0 6 128862027 128862049 mRNA hsa-let-7e ADAMTS19 miRanda miRanda
2192 chr5 128862027 128862027 1 + C T GBM 128862029 + 128862009 128862049 41 GAAAGTGGAAGAGGGAAACGATATTCATACAAATTACCTCA GAAAGTGGAAGAGGGAAATGATATTCATACAAATTACCTCA < 41bp 0.815874430488303 0.562219007226532 0.27629668 0.07113436 prediction 0.507310846523541 Functional Loss - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128862029 chr5:128862027 stopgain 0.991 1 19 hm1A_associated_SNPs_6713 0 0 0 6 128862025 128862049 mRNA hsa-miR-98 ADAMTS19 miRanda miRanda
2192 chr5 128862027 128862027 1 + C T GBM 128862029 + 128862009 128862049 41 GAAAGTGGAAGAGGGAAACGATATTCATACAAATTACCTCA GAAAGTGGAAGAGGGAAATGATATTCATACAAATTACCTCA < 41bp 0.815874430488303 0.562219007226532 0.27629668 0.07113436 prediction 0.507310846523541 Functional Loss - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128862029 chr5:128862027 stopgain 0.991 1 19 hm1A_associated_SNPs_6713 0 0 0 6 128862027 128862049 mRNA hsa-let-7g ADAMTS19 miRanda miRanda
2192 chr5 128862027 128862027 1 + C T GBM 128862029 + 128862009 128862049 41 GAAAGTGGAAGAGGGAAACGATATTCATACAAATTACCTCA GAAAGTGGAAGAGGGAAATGATATTCATACAAATTACCTCA < 41bp 0.815874430488303 0.562219007226532 0.27629668 0.07113436 prediction 0.507310846523541 Functional Loss - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128862029 chr5:128862027 stopgain 0.991 1 19 hm1A_associated_SNPs_6713 0 0 0 6 128862023 128862044 mRNA hsa-miR-590-3p ADAMTS19 miRanda miRanda
2192 chr1 36437667 36437667 1 + C T COAD 36437669 + 36437649 36437689 41 GGGGAAGGTGGAAAAGATCGACCTTTCAAGGTGTCAATCAA GGGGAAGGTGGAAAAGATTGACCTTTCAAGGTGTCAATCAA < 41bp 0.776572537008932 0.522982470429209 0.22840253 0.15614638 prediction 0.507180133159446 Functional Loss - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36437669 chr1:36437667 stopgain 1.000 1 19 hm1A_associated_SNPs_6721 0 0 1 3 36437665 36437687 mRNA hsa-miR-32 EIF2C3 miRanda miRanda
2192 chr1 36437667 36437667 1 + C T COAD 36437669 + 36437649 36437689 41 GGGGAAGGTGGAAAAGATCGACCTTTCAAGGTGTCAATCAA GGGGAAGGTGGAAAAGATTGACCTTTCAAGGTGTCAATCAA < 41bp 0.776572537008932 0.522982470429209 0.22840253 0.15614638 prediction 0.507180133159446 Functional Loss - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36437669 chr1:36437667 stopgain 1.000 1 19 hm1A_associated_SNPs_6721 0 0 1 3 36437667 36437687 mRNA hsa-miR-367 EIF2C3 miRanda miRanda
2192 chr1 36437667 36437667 1 + C T COAD 36437669 + 36437649 36437689 41 GGGGAAGGTGGAAAAGATCGACCTTTCAAGGTGTCAATCAA GGGGAAGGTGGAAAAGATTGACCTTTCAAGGTGTCAATCAA < 41bp 0.776572537008932 0.522982470429209 0.22840253 0.15614638 prediction 0.507180133159446 Functional Loss - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36437669 chr1:36437667 stopgain 1.000 1 19 hm1A_associated_SNPs_6721 0 0 1 3 36437656 36437677 mRNA hsa-miR-488 EIF2C3 miRanda miRanda
2192 chr2 31489459 31489459 1 + C T UCEC 31489461 + 31489441 31489481 41 TGGCATGCTGGACGACGACGAGTTTGCACTGGCCAACCACC TGGCATGCTGGACGACGATGAGTTTGCACTGGCCAACCACC < 41bp 0.816805969798778 0.563217758290581 0.50630224 0.45500264 prediction 0.507176423016392 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489461 chr2:31489459 synonymous SNV . 0 19 hm1A_associated_SNPs_6722 0 0 0 10 31489448 31489470 mRNA hsa-miR-19a EHD3 miRanda miRanda
2192 chr2 31489459 31489459 1 + C T UCEC 31489461 + 31489441 31489481 41 TGGCATGCTGGACGACGACGAGTTTGCACTGGCCAACCACC TGGCATGCTGGACGACGATGAGTTTGCACTGGCCAACCACC < 41bp 0.816805969798778 0.563217758290581 0.50630224 0.45500264 prediction 0.507176423016392 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489461 chr2:31489459 synonymous SNV . 0 19 hm1A_associated_SNPs_6722 0 0 0 10 31489448 31489470 mRNA hsa-miR-19b EHD3 miRanda miRanda
2192 chr2 31489459 31489459 1 + C T UCEC 31489461 + 31489441 31489481 41 TGGCATGCTGGACGACGACGAGTTTGCACTGGCCAACCACC TGGCATGCTGGACGACGATGAGTTTGCACTGGCCAACCACC < 41bp 0.816805969798778 0.563217758290581 0.50630224 0.45500264 prediction 0.507176423016392 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489461 chr2:31489459 synonymous SNV . 0 19 hm1A_associated_SNPs_6722 0 0 0 10 31489451 31489472 mRNA hsa-miR-148a EHD3 miRanda miRanda
2192 chr2 31489459 31489459 1 + C T UCEC 31489461 + 31489441 31489481 41 TGGCATGCTGGACGACGACGAGTTTGCACTGGCCAACCACC TGGCATGCTGGACGACGATGAGTTTGCACTGGCCAACCACC < 41bp 0.816805969798778 0.563217758290581 0.50630224 0.45500264 prediction 0.507176423016392 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489461 chr2:31489459 synonymous SNV . 0 19 hm1A_associated_SNPs_6722 0 0 0 10 31489450 31489471 mRNA hsa-miR-130a EHD3 miRanda miRanda
2192 chr2 31489459 31489459 1 + C T UCEC 31489461 + 31489441 31489481 41 TGGCATGCTGGACGACGACGAGTTTGCACTGGCCAACCACC TGGCATGCTGGACGACGATGAGTTTGCACTGGCCAACCACC < 41bp 0.816805969798778 0.563217758290581 0.50630224 0.45500264 prediction 0.507176423016392 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489461 chr2:31489459 synonymous SNV . 0 19 hm1A_associated_SNPs_6722 0 0 0 10 31489453 31489472 mRNA hsa-miR-152 EHD3 miRanda miRanda
2192 chr2 31489459 31489459 1 + C T UCEC 31489461 + 31489441 31489481 41 TGGCATGCTGGACGACGACGAGTTTGCACTGGCCAACCACC TGGCATGCTGGACGACGATGAGTTTGCACTGGCCAACCACC < 41bp 0.816805969798778 0.563217758290581 0.50630224 0.45500264 prediction 0.507176423016392 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489461 chr2:31489459 synonymous SNV . 0 19 hm1A_associated_SNPs_6722 0 0 0 10 31489449 31489471 mRNA hsa-miR-301a EHD3 miRanda miRanda
2192 chr2 31489459 31489459 1 + C T UCEC 31489461 + 31489441 31489481 41 TGGCATGCTGGACGACGACGAGTTTGCACTGGCCAACCACC TGGCATGCTGGACGACGATGAGTTTGCACTGGCCAACCACC < 41bp 0.816805969798778 0.563217758290581 0.50630224 0.45500264 prediction 0.507176423016392 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489461 chr2:31489459 synonymous SNV . 0 19 hm1A_associated_SNPs_6722 0 0 0 10 31489450 31489471 mRNA hsa-miR-130b EHD3 miRanda miRanda
2192 chr2 31489459 31489459 1 + C T UCEC 31489461 + 31489441 31489481 41 TGGCATGCTGGACGACGACGAGTTTGCACTGGCCAACCACC TGGCATGCTGGACGACGATGAGTTTGCACTGGCCAACCACC < 41bp 0.816805969798778 0.563217758290581 0.50630224 0.45500264 prediction 0.507176423016392 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489461 chr2:31489459 synonymous SNV . 0 19 hm1A_associated_SNPs_6722 0 0 0 10 31489451 31489472 mRNA hsa-miR-148b EHD3 miRanda miRanda
2192 chr2 31489459 31489459 1 + C T UCEC 31489461 + 31489441 31489481 41 TGGCATGCTGGACGACGACGAGTTTGCACTGGCCAACCACC TGGCATGCTGGACGACGATGAGTTTGCACTGGCCAACCACC < 41bp 0.816805969798778 0.563217758290581 0.50630224 0.45500264 prediction 0.507176423016392 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489461 chr2:31489459 synonymous SNV . 0 19 hm1A_associated_SNPs_6722 0 0 0 10 31489450 31489471 mRNA hsa-miR-454 EHD3 miRanda miRanda
2192 chr2 31489459 31489459 1 + C T UCEC 31489461 + 31489441 31489481 41 TGGCATGCTGGACGACGACGAGTTTGCACTGGCCAACCACC TGGCATGCTGGACGACGATGAGTTTGCACTGGCCAACCACC < 41bp 0.816805969798778 0.563217758290581 0.50630224 0.45500264 prediction 0.507176423016392 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489461 chr2:31489459 synonymous SNV . 0 19 hm1A_associated_SNPs_6722 0 0 0 10 31489449 31489471 mRNA hsa-miR-301b EHD3 miRanda miRanda
2192 chr15 45713259 45713259 1 + C T UCEC 45713261 + 45713241 45713281 41 GCTGCTTTGCTGGCTCTGCAAGAAAATGGACTAGACGCAAC GCTGCTTTGCTGGCTCTGTAAGAAAATGGACTAGACGCAAC < 41bp 0.774108745822306 0.521139814841087 0.15182838 0.17193395 prediction 0.505937861962438 Functional Loss - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45713261 chr15:45713259 stopgain 0.995 0 19 hm1A_associated_SNPs_6780 0 0 1 1 45713243 45713265 mRNA hsa-miR-544 SPATA5L1 miRanda miRanda
2192 chr6 105526426 105526426 1 + C T DLBC 105526428 + 105526408 105526448 41 ATGTTGCACAGCCACCCGCGAGTTCTCAGGGAAGACAGGAA ATGTTGCACAGCCACCCGTGAGTTCTCAGGGAAGACAGGAA < 41bp 0.752708072336154 0.462022346880417 0.1411325 0.13024998 prediction 0.505416144672309 Functional Loss - LIN28B ENSG00000187772 CDS Human protein_coding chr6:105526428 chr6:105526426 nonsynonymous SNV 0.242 0 19 hm1A_associated_SNPs_6802 0 0 1 4 105526418 105526439 mRNA hsa-miR-125b LIN28B miRanda miRanda
2192 chr6 105526426 105526426 1 + C T DLBC 105526428 + 105526408 105526448 41 ATGTTGCACAGCCACCCGCGAGTTCTCAGGGAAGACAGGAA ATGTTGCACAGCCACCCGTGAGTTCTCAGGGAAGACAGGAA < 41bp 0.752708072336154 0.462022346880417 0.1411325 0.13024998 prediction 0.505416144672309 Functional Loss - LIN28B ENSG00000187772 CDS Human protein_coding chr6:105526428 chr6:105526426 nonsynonymous SNV 0.242 0 19 hm1A_associated_SNPs_6802 0 0 1 4 105526416 105526439 mRNA hsa-miR-125a-5p LIN28B miRanda miRanda
2192 chr6 105526426 105526426 1 + C T DLBC 105526428 + 105526408 105526448 41 ATGTTGCACAGCCACCCGCGAGTTCTCAGGGAAGACAGGAA ATGTTGCACAGCCACCCGTGAGTTCTCAGGGAAGACAGGAA < 41bp 0.752708072336154 0.462022346880417 0.1411325 0.13024998 prediction 0.505416144672309 Functional Loss - LIN28B ENSG00000187772 CDS Human protein_coding chr6:105526428 chr6:105526426 nonsynonymous SNV 0.242 0 19 hm1A_associated_SNPs_6802 0 0 1 4 105526414 105526435 mRNA hsa-miR-146a LIN28B miRanda miRanda
2192 chr6 105526426 105526426 1 + C T DLBC 105526428 + 105526408 105526448 41 ATGTTGCACAGCCACCCGCGAGTTCTCAGGGAAGACAGGAA ATGTTGCACAGCCACCCGTGAGTTCTCAGGGAAGACAGGAA < 41bp 0.752708072336154 0.462022346880417 0.1411325 0.13024998 prediction 0.505416144672309 Functional Loss - LIN28B ENSG00000187772 CDS Human protein_coding chr6:105526428 chr6:105526426 nonsynonymous SNV 0.242 0 19 hm1A_associated_SNPs_6802 0 0 1 4 105526414 105526435 mRNA hsa-miR-146b-5p LIN28B miRanda miRanda
2192 chr22 18979359 18979359 1 + C T UCEC 18979361 + 18979341 18979381 41 GGCCCATCATTAATACGTCGATGGTGAGCGCACTGGTGTAC GGCCCATCATTAATACGTTGATGGTGAGCGCACTGGTGTAC < 41bp 0.752615561558483 0.4946229320628 0.43011022 0.2321522 prediction 0.505231123116965 Functional Loss - DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979361 chr22:18979359 . . 0 19 hm1A_associated_SNPs_6807 0 0 0 1 18979335 18979360 mRNA hsa-miR-496 DGCR5 miRanda miRanda
2192 chr1 160144482 160144482 1 + C T UCEC 160144484 + 160144464 160144504 41 CGTCTCTAAGCAGGCAGCCGACATGATCCTGCTGGATGACA CGTCTCTAAGCAGGCAGCTGACATGATCCTGCTGGATGACA < 41bp 0.752115086943397 0.498148574767163 0.26063997 0.22790694 prediction 0.504230173886793 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160144484 chr1:160144482 synonymous SNV . 0 19 hm1A_associated_SNPs_6862 0 0 0 1 160144477 160144498 mRNA hsa-miR-214 ATP1A4 miRanda miRanda
2192 chr11 66063633 66063633 1 + T G rs535754216 66063632 + 66063612 66063652 41 GGCCCTGCTACTCACCCAACATTCCCATCCTCCCCTGATAG GGCCCTGCTACTCACCCAACAGTCCCATCCTCCCCTGATAG < 41bp 0.760430127436432 0.508526806543294 0.15967795 0.15499315 prediction 0.503806641786276 Functional Loss - TMEM151A ENSG00000179292 UTR3 Human protein_coding chr11:66063632 chr11:66063633 . . 0 22 hm1A_associated_SNPs_6884 0 0 0 3 66063615 66063637 mRNA hsa-miR-1 TMEM151A miRanda miRanda
2192 chr11 66063633 66063633 1 + T G rs535754216 66063632 + 66063612 66063652 41 GGCCCTGCTACTCACCCAACATTCCCATCCTCCCCTGATAG GGCCCTGCTACTCACCCAACAGTCCCATCCTCCCCTGATAG < 41bp 0.760430127436432 0.508526806543294 0.15967795 0.15499315 prediction 0.503806641786276 Functional Loss - TMEM151A ENSG00000179292 UTR3 Human protein_coding chr11:66063632 chr11:66063633 . . 0 22 hm1A_associated_SNPs_6884 0 0 0 3 66063615 66063637 mRNA hsa-miR-206 TMEM151A miRanda miRanda
2192 chr11 66063633 66063633 1 + T G rs535754216 66063632 + 66063612 66063652 41 GGCCCTGCTACTCACCCAACATTCCCATCCTCCCCTGATAG GGCCCTGCTACTCACCCAACAGTCCCATCCTCCCCTGATAG < 41bp 0.760430127436432 0.508526806543294 0.15967795 0.15499315 prediction 0.503806641786276 Functional Loss - TMEM151A ENSG00000179292 UTR3 Human protein_coding chr11:66063632 chr11:66063633 . . 0 22 hm1A_associated_SNPs_6884 0 0 0 3 66063618 66063637 mRNA hsa-miR-613 TMEM151A miRanda miRanda
2192 chr11 86017477 86017477 1 + C T CESC 86017479 + 86017459 86017499 41 AACTCCTAGGATTTGTCACGAATGGGAAGCCAAGTGCCATC AACTCCTAGGATTTGTCATGAATGGGAAGCCAAGTGCCATC < 41bp 0.751788244607809 0.478961557366949 0.032069206 0.032465786 prediction 0.503576489215618 Functional Loss - HIKESHI ENSG00000149196 CDS Human protein_coding chr11:86017479 chr11:86017477 nonsynonymous SNV 0.998 4 19 hm1A_associated_SNPs_6893 0 0 1 2 86017455 86017478 mRNA hsa-miR-19b C11orf73 miRanda miRanda
2192 chr11 86017477 86017477 1 + C T CESC 86017479 + 86017459 86017499 41 AACTCCTAGGATTTGTCACGAATGGGAAGCCAAGTGCCATC AACTCCTAGGATTTGTCATGAATGGGAAGCCAAGTGCCATC < 41bp 0.751788244607809 0.478961557366949 0.032069206 0.032465786 prediction 0.503576489215618 Functional Loss - HIKESHI ENSG00000149196 CDS Human protein_coding chr11:86017479 chr11:86017477 nonsynonymous SNV 0.998 4 19 hm1A_associated_SNPs_6893 0 0 1 2 86017475 86017499 mRNA hsa-miR-183 C11orf73 miRanda miRanda
2192 chr13 32526773 32526773 1 + C T COAD 32526775 + 32526755 32526795 41 CCACAAGTTCAAATATGGCGATGCAGAAAGGAGATTCTACG CCACAAGTTCAAATATGGTGATGCAGAAAGGAGATTCTACG < 41bp 0.794363739579629 0.542774623504699 0.58100677 0.3790318 prediction 0.503178232149861 Functional Loss - EEF1DP3 ENSG00000229715 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr13:32526775 chr13:32526773 . . 0 19 hm1A_associated_SNPs_6920 0 0 0 2 32526765 32526789 mRNA hsa-miR-204 EEF1DP3 miRanda miRanda
2192 chr13 32526773 32526773 1 + C T COAD 32526775 + 32526755 32526795 41 CCACAAGTTCAAATATGGCGATGCAGAAAGGAGATTCTACG CCACAAGTTCAAATATGGTGATGCAGAAAGGAGATTCTACG < 41bp 0.794363739579629 0.542774623504699 0.58100677 0.3790318 prediction 0.503178232149861 Functional Loss - EEF1DP3 ENSG00000229715 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr13:32526775 chr13:32526773 . . 0 19 hm1A_associated_SNPs_6920 0 0 0 2 32526762 32526783 mRNA hsa-miR-544 EEF1DP3 miRanda miRanda
2192 chr5 2755475 2755475 1 + C T MESO 2755477 + 2755457 2755497 41 AAGAAGAAAAAACGGCATCGAGGCATTTCAATAAAACCTAA AAGAAGAAAAAACGGCATTGAGGCATTTCAATAAAACCTAA < 41bp 0.751532942854896 0.499382911602186 0.6876847 0.36775488 prediction 0.503065885709792 Functional Loss - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2755477 chr5:2755475 synonymous SNV . 0 19 hm1A_associated_SNPs_6927 0 0 0 1 2755466 2755487 mRNA hsa-miR-203 C5orf38 miRanda miRanda
2192 chr12 77202843 77202843 1 + C T UCEC 77202845 + 77202825 77202865 41 ACTATATTTCGAAAGGTGCTATTGTGGATCAACTTGGAGGG ACTATATTTCGAAAGGTGTTATTGTGGATCAACTTGGAGGG < 41bp 0.82356923044351 0.572315068197656 0.069266796 0.062426686 prediction 0.502508324491708 Functional Loss - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77202845 chr12:77202843 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_6962 0 0 1 4 77202824 77202845 mRNA hsa-miR-29a ZDHHC17 miRanda miRanda
2192 chr12 77202843 77202843 1 + C T UCEC 77202845 + 77202825 77202865 41 ACTATATTTCGAAAGGTGCTATTGTGGATCAACTTGGAGGG ACTATATTTCGAAAGGTGTTATTGTGGATCAACTTGGAGGG < 41bp 0.82356923044351 0.572315068197656 0.069266796 0.062426686 prediction 0.502508324491708 Functional Loss - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77202845 chr12:77202843 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_6962 0 0 1 4 77202823 77202845 mRNA hsa-miR-29b ZDHHC17 miRanda miRanda
2192 chr12 77202843 77202843 1 + C T UCEC 77202845 + 77202825 77202865 41 ACTATATTTCGAAAGGTGCTATTGTGGATCAACTTGGAGGG ACTATATTTCGAAAGGTGTTATTGTGGATCAACTTGGAGGG < 41bp 0.82356923044351 0.572315068197656 0.069266796 0.062426686 prediction 0.502508324491708 Functional Loss - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77202845 chr12:77202843 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_6962 0 0 1 4 77202824 77202845 mRNA hsa-miR-29c ZDHHC17 miRanda miRanda
2192 chr12 77202843 77202843 1 + C T UCEC 77202845 + 77202825 77202865 41 ACTATATTTCGAAAGGTGCTATTGTGGATCAACTTGGAGGG ACTATATTTCGAAAGGTGTTATTGTGGATCAACTTGGAGGG < 41bp 0.82356923044351 0.572315068197656 0.069266796 0.062426686 prediction 0.502508324491708 Functional Loss - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77202845 chr12:77202843 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_6962 0 0 1 4 77202838 77202860 mRNA hsa-miR-382 ZDHHC17 miRanda miRanda
2192 chr12 13220190 13220190 1 + C T UCEC 13220192 + 13220172 13220212 41 GAGCCAGAATGGGAAAAGCGAAGATCCATCAACCTGTCTGA GAGCCAGAATGGGAAAAGTGAAGATCCATCAACCTGTCTGA < 41bp 0.755197444205324 0.504003387608275 0.2134951 0.2066352 prediction 0.502388113194098 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13220192 chr12:13220190 stopgain 1.000 1 19 hm1A_associated_SNPs_6968 0 0 1 2 13220185 13220208 mRNA hsa-miR-125a-3p KIAA1467 miRanda miRanda
2192 chr12 13220190 13220190 1 + C T UCEC 13220192 + 13220172 13220212 41 GAGCCAGAATGGGAAAAGCGAAGATCCATCAACCTGTCTGA GAGCCAGAATGGGAAAAGTGAAGATCCATCAACCTGTCTGA < 41bp 0.755197444205324 0.504003387608275 0.2134951 0.2066352 prediction 0.502388113194098 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13220192 chr12:13220190 stopgain 1.000 1 19 hm1A_associated_SNPs_6968 0 0 1 2 13220185 13220207 mRNA hsa-miR-154 KIAA1467 miRanda miRanda
2192 chr8 67369374 67369374 1 + C T UCEC 67369376 + 67369356 67369396 41 GCCCAGATGTTTCCAGAGCGACACCTGGAGATGGCAGAAAT GCCCAGATGTTTCCAGAGTGACACCTGGAGATGGCAGAAAT < 41bp 0.753148574201223 0.502692288198175 0.2551666 0.16855651 prediction 0.500912572006098 Functional Loss - ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67369376 chr8:67369374 stopgain 0.825 1 19 hm1A_associated_SNPs_7036 0 0 0 1 67369373 67369395 mRNA hsa-miR-544 ADHFE1 miRanda miRanda
2192 chr21 43522308 43522308 1 - G T UCEC 43522306 - 43522286 43522326 41 CCGTCAGGTTGTGGTTTACAATCTTTATTGTGACTTCAAAT CCGTCAGGTTGTGGTTTAAAATCTTTATTGTGACTTCAAAT < 41bp 0.808429633453276 0.558168913838494 0.13312897 0.14405674 prediction 0.500521439229562 Functional Loss - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43522306 chr21:43522308 nonsynonymous SNV 0.000 0 19 hm1A_associated_SNPs_7062 0 0 0 6 43522307 43522329 mRNA hsa-miR-30a C21orf128 miRanda miRanda
2192 chr21 43522308 43522308 1 - G T UCEC 43522306 - 43522286 43522326 41 CCGTCAGGTTGTGGTTTACAATCTTTATTGTGACTTCAAAT CCGTCAGGTTGTGGTTTAAAATCTTTATTGTGACTTCAAAT < 41bp 0.808429633453276 0.558168913838494 0.13312897 0.14405674 prediction 0.500521439229562 Functional Loss - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43522306 chr21:43522308 nonsynonymous SNV 0.000 0 19 hm1A_associated_SNPs_7062 0 0 0 6 43522307 43522329 mRNA hsa-miR-30c C21orf128 miRanda miRanda
2192 chr21 43522308 43522308 1 - G T UCEC 43522306 - 43522286 43522326 41 CCGTCAGGTTGTGGTTTACAATCTTTATTGTGACTTCAAAT CCGTCAGGTTGTGGTTTAAAATCTTTATTGTGACTTCAAAT < 41bp 0.808429633453276 0.558168913838494 0.13312897 0.14405674 prediction 0.500521439229562 Functional Loss - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43522306 chr21:43522308 nonsynonymous SNV 0.000 0 19 hm1A_associated_SNPs_7062 0 0 0 6 43522307 43522329 mRNA hsa-miR-30d C21orf128 miRanda miRanda
2192 chr21 43522308 43522308 1 - G T UCEC 43522306 - 43522286 43522326 41 CCGTCAGGTTGTGGTTTACAATCTTTATTGTGACTTCAAAT CCGTCAGGTTGTGGTTTAAAATCTTTATTGTGACTTCAAAT < 41bp 0.808429633453276 0.558168913838494 0.13312897 0.14405674 prediction 0.500521439229562 Functional Loss - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43522306 chr21:43522308 nonsynonymous SNV 0.000 0 19 hm1A_associated_SNPs_7062 0 0 0 6 43522290 43522312 mRNA hsa-miR-224 C21orf128 miRanda miRanda
2192 chr21 43522308 43522308 1 - G T UCEC 43522306 - 43522286 43522326 41 CCGTCAGGTTGTGGTTTACAATCTTTATTGTGACTTCAAAT CCGTCAGGTTGTGGTTTAAAATCTTTATTGTGACTTCAAAT < 41bp 0.808429633453276 0.558168913838494 0.13312897 0.14405674 prediction 0.500521439229562 Functional Loss - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43522306 chr21:43522308 nonsynonymous SNV 0.000 0 19 hm1A_associated_SNPs_7062 0 0 0 6 43522307 43522328 mRNA hsa-miR-30b C21orf128 miRanda miRanda
2192 chr21 43522308 43522308 1 - G T UCEC 43522306 - 43522286 43522326 41 CCGTCAGGTTGTGGTTTACAATCTTTATTGTGACTTCAAAT CCGTCAGGTTGTGGTTTAAAATCTTTATTGTGACTTCAAAT < 41bp 0.808429633453276 0.558168913838494 0.13312897 0.14405674 prediction 0.500521439229562 Functional Loss - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43522306 chr21:43522308 nonsynonymous SNV 0.000 0 19 hm1A_associated_SNPs_7062 0 0 0 6 43522307 43522329 mRNA hsa-miR-30e C21orf128 miRanda miRanda
2192 chr8 91054990 91054990 1 + C T COAD 91054992 + 91054972 91055012 41 TGGGGTAAATATGGAATGCGATTCAATGTGATTCAACCAGG TGGGGTAAATATGGAATGTGATTCAATGTGATTCAACCAGG < 41bp 0.750165974793541 0.441700059353945 0.17403245 0.07810742 prediction 0.500331949587081 Functional Loss - DECR1 ENSG00000104325 CDS Human protein_coding chr8:91054992 chr8:91054990 stopgain 0.996 1 19 hm1A_associated_SNPs_7071 0 0 1 2 91054983 91055003 mRNA hsa-miR-23a DECR1 miRanda miRanda
2192 chr8 91054990 91054990 1 + C T COAD 91054992 + 91054972 91055012 41 TGGGGTAAATATGGAATGCGATTCAATGTGATTCAACCAGG TGGGGTAAATATGGAATGTGATTCAATGTGATTCAACCAGG < 41bp 0.750165974793541 0.441700059353945 0.17403245 0.07810742 prediction 0.500331949587081 Functional Loss - DECR1 ENSG00000104325 CDS Human protein_coding chr8:91054992 chr8:91054990 stopgain 0.996 1 19 hm1A_associated_SNPs_7071 0 0 1 2 91054983 91055003 mRNA hsa-miR-23b DECR1 miRanda miRanda
2192 chr8 30361814 30361814 1 + C T SKCM 30361816 + 30361796 30361836 41 TCCAAAGGGCATCCGCTTCGATCCTGAAATTCCGCAAACAC TCCAAAGGGCATCCGCTTTGATCCTGAAATTCCGCAAACAC < 41bp 0.750039138640367 0.459832570177318 0.29398847 0.08810815 prediction 0.500078277280733 Functional Loss - RBPMS ENSG00000157110 CDS Human protein_coding chr8:30361816 chr8:30361814 synonymous SNV . 0 19 hm1A_associated_SNPs_7087 0 0 1 1 30361813 30361834 mRNA hsa-miR-450a RBPMS miRanda miRanda
2192 chr9 107550745 107550745 1 + C T UCEC 107550747 + 107550727 107550767 41 GGACTCCTCTCAAAAGGGCAAAGAACTCCACGTGTTCTCTC GGACTCCTCTCAAAAGGGTAAAGAACTCCACGTGTTCTCTC < 41bp 0.74963035286144 0.469511294161187 0.124747604 0.11976811 prediction 0.49926070572288 Functional Loss - ABCA1 ENSG00000165029 CDS Human protein_coding chr9:107550747 chr9:107550745 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_7135 0 0 0 1 107550745 107550769 mRNA hsa-miR-185 NIPSNAP3B miRanda miRanda
2192 chr11 18231364 18231364 1 + C T HNSC 18231366 + 18231346 18231386 41 TGGCTGCTGTGCAGCCTTCAACAACGTCGCAATCACATTTC TGGCTGCTGTGCAGCCTTTAACAACGTCGCAATCACATTTC < 41bp 0.749243543113111 0.455413525221418 0.14338675 0.16320506 prediction 0.498487086226223 Functional Loss - LOC494141 ENSG00000189332 CDS Human transcribed_unprocessed_pseudogene chr11:18231366 chr11:18231364 synonymous SNV . 0 19 hm1A_associated_SNPs_7177 0 0 0 1 18231349 18231369 mRNA hsa-miR-653 LOC494141 miRanda miRanda
2192 chr7 151704920 151704920 1 + C T UCEC 151704922 + 151704902 151704942 41 CCCTTTCTAGGTCACCTGCAATGTCTGGAGGAATTTTTGCT CCCTTTCTAGGTCACCTGTAATGTCTGGAGGAATTTTTGCT < 41bp 0.788150490571302 0.53905767792625 0.063133806 0.065817654 prediction 0.498185625290103 Functional Loss - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151704922 chr7:151704920 nonsynonymous SNV 0.998 1 19 hm1A_associated_SNPs_7195 0 0 0 1 151704912 151704920 mRNA hsa-miR-125a-3p GALNTL5 miRanda miRanda
2192 chr1 40422876 40422876 1 + C A LGG 40422878 + 40422858 40422898 41 TTCTTCCTTCAGATCTACCTATTGGATGTGGCTCAGGTGAG TTCTTCCTTCAGATCTACATATTGGATGTGGCTCAGGTGAG < 41bp 0.749090720277499 0.499733514392296 0.1222119 0.12915501 prediction 0.498181440554997 Functional Loss - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40422878 chr1:40422876 nonsynonymous SNV 0.991 5 19 hm1A_associated_SNPs_7196 0 0 0 1 40422855 40422877 mRNA hsa-miR-379 MFSD2A miRanda miRanda
2192 chr8 94717170 94717170 1 + C T UCEC 94717172 + 94717152 94717192 41 ACACTCACAGCAAGGAATCGAGAAGCTAAGCAATTAACTCA ACACTCACAGCAAGGAATTGAGAAGCTAAGCAATTAACTCA < 41bp 0.797707358283173 0.548663120539032 0.25169265 0.16179872 prediction 0.498088475488281 Functional Loss - FAM92A ENSG00000188343 CDS Human protein_coding chr8:94717172 chr8:94717170 stopgain 0.999 1 19 hm1A_associated_SNPs_7205 0 0 0 1 94717165 94717187 mRNA hsa-miR-137 FAM92A1 miRanda miRanda
2192 chr15 57910309 57910309 1 + C T SKCM 57910311 + 57910291 57910331 41 GTGGTGCGAAGATCAGATCAAAATCAGCAGAAAGAAATGGT GTGGTGCGAAGATCAGATTAAAATCAGCAGAAAGAAATGGT < 41bp 0.760980215228567 0.512078265993666 0.08136994 0.09052333 prediction 0.497803898469802 Functional Loss - GCOM1;MYZAP ENSG00000137878;ENSG00000263155 CDS Human other chr15:57910311 chr15:57910309 stopgain 0.998 0 19 hm1A_associated_SNPs_7224 0 0 1 1 57910302 57910322 mRNA hsa-miR-370 GCOM1 miRanda miRanda
2192 chr5 86672329 86672329 1 + C T CESC 86672331 + 86672311 86672351 41 TCCCTGCGTGTTCGAGCACGATACTCTATGGAAAAAATCAT TCCCTGCGTGTTCGAGCATGATACTCTATGGAAAAAATCAT < 41bp 0.748754328519518 0.455276970255671 0.4006275 0.16428244 prediction 0.497508657039035 Functional Loss - RASA1 ENSG00000145715 CDS Human protein_coding chr5:86672331 chr5:86672329 stopgain 1.000 1 19 hm1A_associated_SNPs_7242 1 0 1 1 86672323 86672344 mRNA hsa-miR-384 RASA1 miRanda miRanda
2192 chr1 165533075 165533075 1 + C T rs6676948 165533077 + 165533057 165533097 41 TTTAGTTGCCAGAGACCACTATCTTATGTGCCTCCCCCAGG TTTAGTTGCCAGAGACCATTATCTTATGTGCCTCCCCCAGG < 41bp 0.748697379212736 0.486059679127635 0.19453964 0.13824195 prediction 0.497394758425472 Functional Loss - LOC400794 ENSG00000237463 ncRNA_intronic Human antisense chr1:165533077 chr1:165533075 . . 0 19 hm1A_associated_SNPs_7246 0 0 0 1 165533062 165533077 mRNA hsa-miR-140-5p LRRC52 miRanda miRanda
2192 chrX 37642818 37642818 1 + C T CESC 37642820 + 37642800 37642840 41 ATTCTCTTGCCAGTCTGTCGAAATCTGCTGTCCTTCCTCAG ATTCTCTTGCCAGTCTGTTGAAATCTGCTGTCCTTCCTCAG < 41bp 0.804352376942758 0.555722959496722 0.16190308 0.1072028 prediction 0.497258834892071 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37642820 chrX:37642818 stopgain 1.000 1 19 hm1A_associated_SNPs_7259 2 0 0 1 37642814 37642837 mRNA hsa-miR-7 CYBB miRanda miRanda
2192 chr20 44663630 44663630 1 + C T COAD 44663632 + 44663612 44663652 41 TCCCTTCATCAACAGCACCGACACAGAGAAGGGAAAGGAGT TCCCTTCATCAACAGCACTGACACAGAGAAGGGAAAGGAGT < 41bp 0.757555035218702 0.509148990986898 0.31055212 0.19363898 prediction 0.496812088463607 Functional Loss - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44663632 chr20:44663630 synonymous SNV . 0 19 hm1A_associated_SNPs_7283 0 0 0 2 44663626 44663646 mRNA hsa-miR-204 SLC12A5 miRanda miRanda
2192 chr20 44663630 44663630 1 + C T COAD 44663632 + 44663612 44663652 41 TCCCTTCATCAACAGCACCGACACAGAGAAGGGAAAGGAGT TCCCTTCATCAACAGCACTGACACAGAGAAGGGAAAGGAGT < 41bp 0.757555035218702 0.509148990986898 0.31055212 0.19363898 prediction 0.496812088463607 Functional Loss - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44663632 chr20:44663630 synonymous SNV . 0 19 hm1A_associated_SNPs_7283 0 0 0 2 44663627 44663646 mRNA hsa-miR-211 SLC12A5 miRanda miRanda
2192 chr9 5457128 5457128 1 + C T COAD 5457130 + 5457110 5457150 41 TGTGGTAGAGTATGGTAGCAATATGACAATTGAATGCAAAT TGTGGTAGAGTATGGTAGTAATATGACAATTGAATGCAAAT < 41bp 0.80289495671945 0.554503522269794 0.08782992 0.06546199 prediction 0.496782868899312 Functional Loss - CD274 ENSG00000120217 CDS Human protein_coding chr9:5457130 chr9:5457128 synonymous SNV . 0 19 hm1A_associated_SNPs_7285 0 0 0 10 5457126 5457148 mRNA hsa-miR-33a CD274 miRanda miRanda
2192 chr9 5457128 5457128 1 + C T COAD 5457130 + 5457110 5457150 41 TGTGGTAGAGTATGGTAGCAATATGACAATTGAATGCAAAT TGTGGTAGAGTATGGTAGTAATATGACAATTGAATGCAAAT < 41bp 0.80289495671945 0.554503522269794 0.08782992 0.06546199 prediction 0.496782868899312 Functional Loss - CD274 ENSG00000120217 CDS Human protein_coding chr9:5457130 chr9:5457128 synonymous SNV . 0 19 hm1A_associated_SNPs_7285 0 0 0 10 5457127 5457147 mRNA hsa-miR-181a CD274 miRanda miRanda
2192 chr9 5457128 5457128 1 + C T COAD 5457130 + 5457110 5457150 41 TGTGGTAGAGTATGGTAGCAATATGACAATTGAATGCAAAT TGTGGTAGAGTATGGTAGTAATATGACAATTGAATGCAAAT < 41bp 0.80289495671945 0.554503522269794 0.08782992 0.06546199 prediction 0.496782868899312 Functional Loss - CD274 ENSG00000120217 CDS Human protein_coding chr9:5457130 chr9:5457128 synonymous SNV . 0 19 hm1A_associated_SNPs_7285 0 0 0 10 5457127 5457147 mRNA hsa-miR-181b CD274 miRanda miRanda
2192 chr9 5457128 5457128 1 + C T COAD 5457130 + 5457110 5457150 41 TGTGGTAGAGTATGGTAGCAATATGACAATTGAATGCAAAT TGTGGTAGAGTATGGTAGTAATATGACAATTGAATGCAAAT < 41bp 0.80289495671945 0.554503522269794 0.08782992 0.06546199 prediction 0.496782868899312 Functional Loss - CD274 ENSG00000120217 CDS Human protein_coding chr9:5457130 chr9:5457128 synonymous SNV . 0 19 hm1A_associated_SNPs_7285 0 0 0 10 5457127 5457147 mRNA hsa-miR-181c CD274 miRanda miRanda
2192 chr9 5457128 5457128 1 + C T COAD 5457130 + 5457110 5457150 41 TGTGGTAGAGTATGGTAGCAATATGACAATTGAATGCAAAT TGTGGTAGAGTATGGTAGTAATATGACAATTGAATGCAAAT < 41bp 0.80289495671945 0.554503522269794 0.08782992 0.06546199 prediction 0.496782868899312 Functional Loss - CD274 ENSG00000120217 CDS Human protein_coding chr9:5457130 chr9:5457128 synonymous SNV . 0 19 hm1A_associated_SNPs_7285 0 0 0 10 5457121 5457141 mRNA hsa-miR-219-5p CD274 miRanda miRanda
2192 chr9 5457128 5457128 1 + C T COAD 5457130 + 5457110 5457150 41 TGTGGTAGAGTATGGTAGCAATATGACAATTGAATGCAAAT TGTGGTAGAGTATGGTAGTAATATGACAATTGAATGCAAAT < 41bp 0.80289495671945 0.554503522269794 0.08782992 0.06546199 prediction 0.496782868899312 Functional Loss - CD274 ENSG00000120217 CDS Human protein_coding chr9:5457130 chr9:5457128 synonymous SNV . 0 19 hm1A_associated_SNPs_7285 0 0 0 10 5457106 5457129 mRNA hsa-miR-221 CD274 miRanda miRanda
2192 chr9 5457128 5457128 1 + C T COAD 5457130 + 5457110 5457150 41 TGTGGTAGAGTATGGTAGCAATATGACAATTGAATGCAAAT TGTGGTAGAGTATGGTAGTAATATGACAATTGAATGCAAAT < 41bp 0.80289495671945 0.554503522269794 0.08782992 0.06546199 prediction 0.496782868899312 Functional Loss - CD274 ENSG00000120217 CDS Human protein_coding chr9:5457130 chr9:5457128 synonymous SNV . 0 19 hm1A_associated_SNPs_7285 0 0 0 10 5457113 5457133 mRNA hsa-miR-137 CD274 miRanda miRanda
2192 chr9 5457128 5457128 1 + C T COAD 5457130 + 5457110 5457150 41 TGTGGTAGAGTATGGTAGCAATATGACAATTGAATGCAAAT TGTGGTAGAGTATGGTAGTAATATGACAATTGAATGCAAAT < 41bp 0.80289495671945 0.554503522269794 0.08782992 0.06546199 prediction 0.496782868899312 Functional Loss - CD274 ENSG00000120217 CDS Human protein_coding chr9:5457130 chr9:5457128 synonymous SNV . 0 19 hm1A_associated_SNPs_7285 0 0 0 10 5457109 5457132 mRNA hsa-miR-363 CD274 miRanda miRanda
2192 chr9 5457128 5457128 1 + C T COAD 5457130 + 5457110 5457150 41 TGTGGTAGAGTATGGTAGCAATATGACAATTGAATGCAAAT TGTGGTAGAGTATGGTAGTAATATGACAATTGAATGCAAAT < 41bp 0.80289495671945 0.554503522269794 0.08782992 0.06546199 prediction 0.496782868899312 Functional Loss - CD274 ENSG00000120217 CDS Human protein_coding chr9:5457130 chr9:5457128 synonymous SNV . 0 19 hm1A_associated_SNPs_7285 0 0 0 10 5457124 5457147 mRNA hsa-miR-181d CD274 miRanda miRanda
2192 chr9 5457128 5457128 1 + C T COAD 5457130 + 5457110 5457150 41 TGTGGTAGAGTATGGTAGCAATATGACAATTGAATGCAAAT TGTGGTAGAGTATGGTAGTAATATGACAATTGAATGCAAAT < 41bp 0.80289495671945 0.554503522269794 0.08782992 0.06546199 prediction 0.496782868899312 Functional Loss - CD274 ENSG00000120217 CDS Human protein_coding chr9:5457130 chr9:5457128 synonymous SNV . 0 19 hm1A_associated_SNPs_7285 0 0 0 10 5457127 5457148 mRNA hsa-miR-33b CD274 miRanda miRanda
2192 chr16 30199126 30199126 1 + C T rs113875403 30199128 + 30199108 30199148 41 CTTCTTTGACCCTGACACCAACATCGTCTACCTCTGTGGCA CTTCTTTGACCCTGACACTAACATCGTCTACCTCTGTGGCA < 41bp 0.80093199554454 0.552734346211754 0.49146733 0.3646235 prediction 0.496395298665572 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199128 chr16:30199126 synonymous SNV . 0 19 hm1A_associated_SNPs_7305 0 0 0 10 30199122 30199142 mRNA hsa-let-7a CORO1A miRanda miRanda
2192 chr16 30199126 30199126 1 + C T rs113875403 30199128 + 30199108 30199148 41 CTTCTTTGACCCTGACACCAACATCGTCTACCTCTGTGGCA CTTCTTTGACCCTGACACTAACATCGTCTACCTCTGTGGCA < 41bp 0.80093199554454 0.552734346211754 0.49146733 0.3646235 prediction 0.496395298665572 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199128 chr16:30199126 synonymous SNV . 0 19 hm1A_associated_SNPs_7305 0 0 0 10 30199123 30199142 mRNA hsa-let-7b CORO1A miRanda miRanda
2192 chr16 30199126 30199126 1 + C T rs113875403 30199128 + 30199108 30199148 41 CTTCTTTGACCCTGACACCAACATCGTCTACCTCTGTGGCA CTTCTTTGACCCTGACACTAACATCGTCTACCTCTGTGGCA < 41bp 0.80093199554454 0.552734346211754 0.49146733 0.3646235 prediction 0.496395298665572 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199128 chr16:30199126 synonymous SNV . 0 19 hm1A_associated_SNPs_7305 0 0 0 10 30199123 30199142 mRNA hsa-let-7c CORO1A miRanda miRanda
2192 chr16 30199126 30199126 1 + C T rs113875403 30199128 + 30199108 30199148 41 CTTCTTTGACCCTGACACCAACATCGTCTACCTCTGTGGCA CTTCTTTGACCCTGACACTAACATCGTCTACCTCTGTGGCA < 41bp 0.80093199554454 0.552734346211754 0.49146733 0.3646235 prediction 0.496395298665572 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199128 chr16:30199126 synonymous SNV . 0 19 hm1A_associated_SNPs_7305 0 0 0 10 30199119 30199142 mRNA hsa-let-7d CORO1A miRanda miRanda
2192 chr16 30199126 30199126 1 + C T rs113875403 30199128 + 30199108 30199148 41 CTTCTTTGACCCTGACACCAACATCGTCTACCTCTGTGGCA CTTCTTTGACCCTGACACTAACATCGTCTACCTCTGTGGCA < 41bp 0.80093199554454 0.552734346211754 0.49146733 0.3646235 prediction 0.496395298665572 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199128 chr16:30199126 synonymous SNV . 0 19 hm1A_associated_SNPs_7305 0 0 0 10 30199119 30199142 mRNA hsa-let-7e CORO1A miRanda miRanda
2192 chr16 30199126 30199126 1 + C T rs113875403 30199128 + 30199108 30199148 41 CTTCTTTGACCCTGACACCAACATCGTCTACCTCTGTGGCA CTTCTTTGACCCTGACACTAACATCGTCTACCTCTGTGGCA < 41bp 0.80093199554454 0.552734346211754 0.49146733 0.3646235 prediction 0.496395298665572 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199128 chr16:30199126 synonymous SNV . 0 19 hm1A_associated_SNPs_7305 0 0 0 10 30199122 30199142 mRNA hsa-let-7f CORO1A miRanda miRanda
2192 chr16 30199126 30199126 1 + C T rs113875403 30199128 + 30199108 30199148 41 CTTCTTTGACCCTGACACCAACATCGTCTACCTCTGTGGCA CTTCTTTGACCCTGACACTAACATCGTCTACCTCTGTGGCA < 41bp 0.80093199554454 0.552734346211754 0.49146733 0.3646235 prediction 0.496395298665572 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199128 chr16:30199126 synonymous SNV . 0 19 hm1A_associated_SNPs_7305 0 0 0 10 30199122 30199142 mRNA hsa-miR-98 CORO1A miRanda miRanda
2192 chr16 30199126 30199126 1 + C T rs113875403 30199128 + 30199108 30199148 41 CTTCTTTGACCCTGACACCAACATCGTCTACCTCTGTGGCA CTTCTTTGACCCTGACACTAACATCGTCTACCTCTGTGGCA < 41bp 0.80093199554454 0.552734346211754 0.49146733 0.3646235 prediction 0.496395298665572 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199128 chr16:30199126 synonymous SNV . 0 19 hm1A_associated_SNPs_7305 0 0 0 10 30199117 30199142 mRNA hsa-let-7g CORO1A miRanda miRanda
2192 chr16 30199126 30199126 1 + C T rs113875403 30199128 + 30199108 30199148 41 CTTCTTTGACCCTGACACCAACATCGTCTACCTCTGTGGCA CTTCTTTGACCCTGACACTAACATCGTCTACCTCTGTGGCA < 41bp 0.80093199554454 0.552734346211754 0.49146733 0.3646235 prediction 0.496395298665572 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199128 chr16:30199126 synonymous SNV . 0 19 hm1A_associated_SNPs_7305 0 0 0 10 30199121 30199142 mRNA hsa-let-7i CORO1A miRanda miRanda
2192 chr16 30199126 30199126 1 + C T rs113875403 30199128 + 30199108 30199148 41 CTTCTTTGACCCTGACACCAACATCGTCTACCTCTGTGGCA CTTCTTTGACCCTGACACTAACATCGTCTACCTCTGTGGCA < 41bp 0.80093199554454 0.552734346211754 0.49146733 0.3646235 prediction 0.496395298665572 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199128 chr16:30199126 synonymous SNV . 0 19 hm1A_associated_SNPs_7305 0 0 0 10 30199120 30199140 mRNA hsa-miR-379 CORO1A miRanda miRanda
2192 chr16 29124392 29124392 1 + C T COAD 29124394 + 29124374 29124414 41 TTCTGGAGAATCATGTAGCGACAGATGAAGACGAACCTGCT TTCTGGAGAATCATGTAGTGACAGATGAAGACGAACCTGCT < 41bp 0.747348888302544 0.489987405883461 0.1507422 0.09662512 prediction 0.494697776605087 Functional Loss - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29124394 chr16:29124392 . . 0 19 hm1A_associated_SNPs_7425 0 0 0 2 29124371 29124393 mRNA hsa-miR-221 RRN3P2 miRanda miRanda
2192 chr16 29124392 29124392 1 + C T COAD 29124394 + 29124374 29124414 41 TTCTGGAGAATCATGTAGCGACAGATGAAGACGAACCTGCT TTCTGGAGAATCATGTAGTGACAGATGAAGACGAACCTGCT < 41bp 0.747348888302544 0.489987405883461 0.1507422 0.09662512 prediction 0.494697776605087 Functional Loss - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29124394 chr16:29124392 . . 0 19 hm1A_associated_SNPs_7425 0 0 0 2 29124373 29124393 mRNA hsa-miR-222 RRN3P2 miRanda miRanda
2192 chr19 23316947 23316947 1 + C T rs11670477 23316949 + 23316929 23316969 41 GTGGCAATGTCTGGACACCGAACAACAGAATTTATATAGAA GTGGCAATGTCTGGACACTGAACAACAGAATTTATATAGAA < 41bp 0.753566235248545 0.50622819705852 0.13092524 0.07874119 prediction 0.494676076380049 Functional Loss - ZNF730 ENSG00000183850 CDS Human protein_coding chr19:23316949 chr19:23316947 synonymous SNV . 0 19 hm1A_associated_SNPs_7428 0 0 0 1 23316933 23316954 mRNA hsa-miR-375 ZNF730 miRanda miRanda
2192 chrX 74519723 74519723 1 + C T COAD 74519725 + 74519705 74519745 41 AAGTCCTTCTGATGTATCCAATTCTCAGTGAGTGGCTTCCA AAGTCCTTCTGATGTATCTAATTCTCAGTGAGTGGCTTCCA < 41bp 0.746945894779352 0.459526511166759 0.07142678 0.06247863 prediction 0.493891789558704 Functional Loss - UPRT ENSG00000094841 CDS Human protein_coding chrX:74519725 chrX:74519723 nonsynonymous SNV 1.000 5 19 hm1A_associated_SNPs_7482 0 0 0 3 74519717 74519731 mRNA hsa-miR-199a-5p UPRT miRanda miRanda
2192 chrX 74519723 74519723 1 + C T COAD 74519725 + 74519705 74519745 41 AAGTCCTTCTGATGTATCCAATTCTCAGTGAGTGGCTTCCA AAGTCCTTCTGATGTATCTAATTCTCAGTGAGTGGCTTCCA < 41bp 0.746945894779352 0.459526511166759 0.07142678 0.06247863 prediction 0.493891789558704 Functional Loss - UPRT ENSG00000094841 CDS Human protein_coding chrX:74519725 chrX:74519723 nonsynonymous SNV 1.000 5 19 hm1A_associated_SNPs_7482 0 0 0 3 74519717 74519731 mRNA hsa-miR-199b-5p UPRT miRanda miRanda
2192 chrX 74519723 74519723 1 + C T COAD 74519725 + 74519705 74519745 41 AAGTCCTTCTGATGTATCCAATTCTCAGTGAGTGGCTTCCA AAGTCCTTCTGATGTATCTAATTCTCAGTGAGTGGCTTCCA < 41bp 0.746945894779352 0.459526511166759 0.07142678 0.06247863 prediction 0.493891789558704 Functional Loss - UPRT ENSG00000094841 CDS Human protein_coding chrX:74519725 chrX:74519723 nonsynonymous SNV 1.000 5 19 hm1A_associated_SNPs_7482 0 0 0 3 74519718 74519731 mRNA hsa-miR-145 UPRT miRanda miRanda
2192 chr12 3692298 3692298 1 + C T UCEC 3692300 + 3692280 3692320 41 CCTGCAGATACAGCGCAACGACTACGTCCACGCCCTGGTCA CCTGCAGATACAGCGCAATGACTACGTCCACGCCCTGGTCA < 41bp 0.795454620967699 0.548684448925481 0.20256618 0.16254652 prediction 0.493540344084435 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3692300 chr12:3692298 synonymous SNV . 0 19 hm1A_associated_SNPs_7509 0 0 0 1 3692287 3692305 mRNA hsa-miR-142-3p PRMT8 miRanda miRanda
2192 chr14 75361079 75361079 1 + C T HNSC 75361081 + 75361061 75361101 41 AGGCCCAGAATACATGTGCAATGCTGACAACTTTTAATGAG AGGCCCAGAATACATGTGTAATGCTGACAACTTTTAATGAG < 41bp 0.845333038465308 0.59876791704115 0.08442068 0.067439884 prediction 0.493130242848315 Functional Loss - DLST ENSG00000119689 CDS Human protein_coding chr14:75361081 chr14:75361079 nonsynonymous SNV 0.996 3 19 hm1A_associated_SNPs_7538 0 0 1 9 75361066 75361088 mRNA hsa-miR-23a DLST miRanda miRanda
2192 chr14 75361079 75361079 1 + C T HNSC 75361081 + 75361061 75361101 41 AGGCCCAGAATACATGTGCAATGCTGACAACTTTTAATGAG AGGCCCAGAATACATGTGTAATGCTGACAACTTTTAATGAG < 41bp 0.845333038465308 0.59876791704115 0.08442068 0.067439884 prediction 0.493130242848315 Functional Loss - DLST ENSG00000119689 CDS Human protein_coding chr14:75361081 chr14:75361079 nonsynonymous SNV 0.996 3 19 hm1A_associated_SNPs_7538 0 0 1 9 75361059 75361083 mRNA hsa-miR-25 DLST miRanda miRanda
2192 chr14 75361079 75361079 1 + C T HNSC 75361081 + 75361061 75361101 41 AGGCCCAGAATACATGTGCAATGCTGACAACTTTTAATGAG AGGCCCAGAATACATGTGTAATGCTGACAACTTTTAATGAG < 41bp 0.845333038465308 0.59876791704115 0.08442068 0.067439884 prediction 0.493130242848315 Functional Loss - DLST ENSG00000119689 CDS Human protein_coding chr14:75361081 chr14:75361079 nonsynonymous SNV 0.996 3 19 hm1A_associated_SNPs_7538 0 0 1 9 75361061 75361083 mRNA hsa-miR-32 DLST miRanda miRanda
2192 chr14 75361079 75361079 1 + C T HNSC 75361081 + 75361061 75361101 41 AGGCCCAGAATACATGTGCAATGCTGACAACTTTTAATGAG AGGCCCAGAATACATGTGTAATGCTGACAACTTTTAATGAG < 41bp 0.845333038465308 0.59876791704115 0.08442068 0.067439884 prediction 0.493130242848315 Functional Loss - DLST ENSG00000119689 CDS Human protein_coding chr14:75361081 chr14:75361079 nonsynonymous SNV 0.996 3 19 hm1A_associated_SNPs_7538 0 0 1 9 75361059 75361083 mRNA hsa-miR-92a DLST miRanda miRanda
2192 chr14 75361079 75361079 1 + C T HNSC 75361081 + 75361061 75361101 41 AGGCCCAGAATACATGTGCAATGCTGACAACTTTTAATGAG AGGCCCAGAATACATGTGTAATGCTGACAACTTTTAATGAG < 41bp 0.845333038465308 0.59876791704115 0.08442068 0.067439884 prediction 0.493130242848315 Functional Loss - DLST ENSG00000119689 CDS Human protein_coding chr14:75361081 chr14:75361079 nonsynonymous SNV 0.996 3 19 hm1A_associated_SNPs_7538 0 0 1 9 75361066 75361088 mRNA hsa-miR-23b DLST miRanda miRanda
2192 chr14 75361079 75361079 1 + C T HNSC 75361081 + 75361061 75361101 41 AGGCCCAGAATACATGTGCAATGCTGACAACTTTTAATGAG AGGCCCAGAATACATGTGTAATGCTGACAACTTTTAATGAG < 41bp 0.845333038465308 0.59876791704115 0.08442068 0.067439884 prediction 0.493130242848315 Functional Loss - DLST ENSG00000119689 CDS Human protein_coding chr14:75361081 chr14:75361079 nonsynonymous SNV 0.996 3 19 hm1A_associated_SNPs_7538 0 0 1 9 75361064 75361083 mRNA hsa-miR-363 DLST miRanda miRanda
2192 chr14 75361079 75361079 1 + C T HNSC 75361081 + 75361061 75361101 41 AGGCCCAGAATACATGTGCAATGCTGACAACTTTTAATGAG AGGCCCAGAATACATGTGTAATGCTGACAACTTTTAATGAG < 41bp 0.845333038465308 0.59876791704115 0.08442068 0.067439884 prediction 0.493130242848315 Functional Loss - DLST ENSG00000119689 CDS Human protein_coding chr14:75361081 chr14:75361079 nonsynonymous SNV 0.996 3 19 hm1A_associated_SNPs_7538 0 0 1 9 75361062 75361083 mRNA hsa-miR-367 DLST miRanda miRanda
2192 chr14 75361079 75361079 1 + C T HNSC 75361081 + 75361061 75361101 41 AGGCCCAGAATACATGTGCAATGCTGACAACTTTTAATGAG AGGCCCAGAATACATGTGTAATGCTGACAACTTTTAATGAG < 41bp 0.845333038465308 0.59876791704115 0.08442068 0.067439884 prediction 0.493130242848315 Functional Loss - DLST ENSG00000119689 CDS Human protein_coding chr14:75361081 chr14:75361079 nonsynonymous SNV 0.996 3 19 hm1A_associated_SNPs_7538 0 0 1 9 75361073 75361094 mRNA hsa-miR-382 DLST miRanda miRanda
2192 chr14 75361079 75361079 1 + C T HNSC 75361081 + 75361061 75361101 41 AGGCCCAGAATACATGTGCAATGCTGACAACTTTTAATGAG AGGCCCAGAATACATGTGTAATGCTGACAACTTTTAATGAG < 41bp 0.845333038465308 0.59876791704115 0.08442068 0.067439884 prediction 0.493130242848315 Functional Loss - DLST ENSG00000119689 CDS Human protein_coding chr14:75361081 chr14:75361079 nonsynonymous SNV 0.996 3 19 hm1A_associated_SNPs_7538 0 0 1 9 75361059 75361083 mRNA hsa-miR-92b DLST miRanda miRanda
2192 chr1 16101280 16101280 1 + C T COAD 16101282 + 16101262 16101302 41 CGAGGTGTACTGCCTGGACGACTTCTACAGGTACGAGAAGG CGAGGTGTACTGCCTGGATGACTTCTACAGGTACGAGAAGG < 41bp 0.773409564055112 0.52721726447043 0.33487102 0.18840247 prediction 0.492384599169364 Functional Loss - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16101282 chr1:16101280 synonymous SNV . 0 19 hm1A_associated_SNPs_7589 0 0 1 1 16101274 16101291 mRNA hsa-miR-384 FBLIM1 miRanda miRanda
2192 chr2 228754647 228754647 1 + C T UCEC 228754649 + 228754629 228754669 41 TTCACGAACAGAGCAAGTCAAACTTTTGATACAGAGGTTGC TTCACGAACAGAGCAAGTTAAACTTTTGATACAGAGGTTGC < 41bp 0.746174542118059 0.484689522545883 0.22958127 0.2621256 prediction 0.492349084236118 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228754649 chr2:228754647 synonymous SNV . 0 19 hm1A_associated_SNPs_7590 0 0 0 1 228754645 228754667 mRNA hsa-miR-10a WDR69 miRanda miRanda
2192 chr4 3318236 3318236 1 + C T UCS 3318238 + 3318218 3318258 41 TGATGAAGAAGGGGGACTCTATGAAGGAAAAGGCTGGCTGA TGATGAAGAAGGGGGACTTTATGAAGGAAAAGGCTGGCTGA < 41bp 0.745859242050728 0.491393656606488 0.6491678 0.52929443 prediction 0.491718484101456 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3318238 chr4:3318236 synonymous SNV . 0 19 hm1A_associated_SNPs_7636 0 0 0 3 3318220 3318245 mRNA hsa-miR-205 RGS12 miRanda miRanda
2192 chr4 3318236 3318236 1 + C T UCS 3318238 + 3318218 3318258 41 TGATGAAGAAGGGGGACTCTATGAAGGAAAAGGCTGGCTGA TGATGAAGAAGGGGGACTTTATGAAGGAAAAGGCTGGCTGA < 41bp 0.745859242050728 0.491393656606488 0.6491678 0.52929443 prediction 0.491718484101456 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3318238 chr4:3318236 synonymous SNV . 0 19 hm1A_associated_SNPs_7636 0 0 0 3 3318222 3318242 mRNA hsa-miR-376a RGS12 miRanda miRanda
2192 chr4 3318236 3318236 1 + C T UCS 3318238 + 3318218 3318258 41 TGATGAAGAAGGGGGACTCTATGAAGGAAAAGGCTGGCTGA TGATGAAGAAGGGGGACTTTATGAAGGAAAAGGCTGGCTGA < 41bp 0.745859242050728 0.491393656606488 0.6491678 0.52929443 prediction 0.491718484101456 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3318238 chr4:3318236 synonymous SNV . 0 19 hm1A_associated_SNPs_7636 0 0 0 3 3318221 3318242 mRNA hsa-miR-376b RGS12 miRanda miRanda
2192 chrX 101822113 101822113 1 + C A UCEC 101822115 + 101822095 101822135 41 TTTAAGGAAGGTGAGTGTCTATAGATTCTTCTCTCCAGATC TTTAAGGAAGGTGAGTGTATATAGATTCTTCTCTCCAGATC < 41bp 0.745454113922881 0.476482599809789 0.20023632 0.16829932 prediction 0.490908227845761 Functional Loss - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101822115 chrX:101822113 . . 0 19 hm1A_associated_SNPs_7687 0 0 0 1 101822109 101822131 mRNA hsa-miR-185 NXF4 miRanda miRanda
2192 chr6 7593990 7593990 1 + C T rs9502621 7593992 + 7593972 7594012 41 AGTTGTGATATGTCCATACGATTCCAATCATCACATGCCTA AGTTGTGATATGTCCATATGATTCCAATCATCACATGCCTA < 41bp 0.838395524421074 0.593076000571301 0.12516665 0.06844282 prediction 0.490639047699547 Functional Loss - SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7593992 chr6:7593990 synonymous SNV . 0 19 hm1A_associated_SNPs_7707 0 0 1 2 7593975 7593997 mRNA hsa-miR-1 SNRNP48 miRanda miRanda
2192 chr6 7593990 7593990 1 + C T rs9502621 7593992 + 7593972 7594012 41 AGTTGTGATATGTCCATACGATTCCAATCATCACATGCCTA AGTTGTGATATGTCCATATGATTCCAATCATCACATGCCTA < 41bp 0.838395524421074 0.593076000571301 0.12516665 0.06844282 prediction 0.490639047699547 Functional Loss - SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7593992 chr6:7593990 synonymous SNV . 0 19 hm1A_associated_SNPs_7707 0 0 1 2 7593975 7593997 mRNA hsa-miR-206 SNRNP48 miRanda miRanda
2192 chr3 119209503 119209503 1 + C T COAD 119209505 + 119209485 119209525 41 TGAGTGGCTAGAATTCTTCTATCCACAGCTGAAGCCATGGG TGAGTGGCTAGAATTCTTTTATCCACAGCTGAAGCCATGGG < 41bp 0.744936948942143 0.440338799814604 0.11234942 0.12881717 prediction 0.489873897884285 Functional Loss - POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119209505 chr3:119209503 synonymous SNV . 0 19 hm1A_associated_SNPs_7763 0 0 1 2 119209501 119209523 mRNA hsa-miR-135a KTELC1 miRanda miRanda
2192 chr3 119209503 119209503 1 + C T COAD 119209505 + 119209485 119209525 41 TGAGTGGCTAGAATTCTTCTATCCACAGCTGAAGCCATGGG TGAGTGGCTAGAATTCTTTTATCCACAGCTGAAGCCATGGG < 41bp 0.744936948942143 0.440338799814604 0.11234942 0.12881717 prediction 0.489873897884285 Functional Loss - POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119209505 chr3:119209503 synonymous SNV . 0 19 hm1A_associated_SNPs_7763 0 0 1 2 119209501 119209523 mRNA hsa-miR-135b KTELC1 miRanda miRanda
2192 chr14 76241902 76241902 1 + C T STAD 76241904 + 76241884 76241924 41 ATGGTATTACCCAGTCGACGATTGGCACTTCTGGAACGCAG ATGGTATTACCCAGTCGATGATTGGCACTTCTGGAACGCAG < 41bp 0.826203384111498 0.581650116291791 0.23885724 0.1502037 prediction 0.489106535639415 Functional Loss - TTLL5 ENSG00000119685 CDS Human protein_coding chr14:76241904 chr14:76241902 stopgain 0.989 0 19 hm1A_associated_SNPs_7832 0 0 1 3 76241890 76241913 mRNA hsa-miR-130a TTLL5 miRanda miRanda
2192 chr14 76241902 76241902 1 + C T STAD 76241904 + 76241884 76241924 41 ATGGTATTACCCAGTCGACGATTGGCACTTCTGGAACGCAG ATGGTATTACCCAGTCGATGATTGGCACTTCTGGAACGCAG < 41bp 0.826203384111498 0.581650116291791 0.23885724 0.1502037 prediction 0.489106535639415 Functional Loss - TTLL5 ENSG00000119685 CDS Human protein_coding chr14:76241904 chr14:76241902 stopgain 0.989 0 19 hm1A_associated_SNPs_7832 0 0 1 3 76241888 76241913 mRNA hsa-miR-301a TTLL5 miRanda miRanda
2192 chr14 76241902 76241902 1 + C T STAD 76241904 + 76241884 76241924 41 ATGGTATTACCCAGTCGACGATTGGCACTTCTGGAACGCAG ATGGTATTACCCAGTCGATGATTGGCACTTCTGGAACGCAG < 41bp 0.826203384111498 0.581650116291791 0.23885724 0.1502037 prediction 0.489106535639415 Functional Loss - TTLL5 ENSG00000119685 CDS Human protein_coding chr14:76241904 chr14:76241902 stopgain 0.989 0 19 hm1A_associated_SNPs_7832 0 0 1 3 76241890 76241913 mRNA hsa-miR-130b TTLL5 miRanda miRanda
2192 chr4 128625385 128625385 1 + C T UCEC 128625387 + 128625367 128625407 41 TGAATTTTTCCCCCAGTCCGAGGATTACTATGACATGAGGC TGAATTTTTCCCCCAGTCTGAGGATTACTATGACATGAGGC < 41bp 0.744404116044525 0.478962017858599 0.2593631 0.12601268 prediction 0.488808232089051 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128625387 chr4:128625385 synonymous SNV . 0 19 hm1A_associated_SNPs_7858 0 0 0 3 128625383 128625400 mRNA hsa-miR-26a INTU miRanda miRanda
2192 chr4 128625385 128625385 1 + C T UCEC 128625387 + 128625367 128625407 41 TGAATTTTTCCCCCAGTCCGAGGATTACTATGACATGAGGC TGAATTTTTCCCCCAGTCTGAGGATTACTATGACATGAGGC < 41bp 0.744404116044525 0.478962017858599 0.2593631 0.12601268 prediction 0.488808232089051 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128625387 chr4:128625385 synonymous SNV . 0 19 hm1A_associated_SNPs_7858 0 0 0 3 128625383 128625400 mRNA hsa-miR-26b INTU miRanda miRanda
2192 chr4 128625385 128625385 1 + C T UCEC 128625387 + 128625367 128625407 41 TGAATTTTTCCCCCAGTCCGAGGATTACTATGACATGAGGC TGAATTTTTCCCCCAGTCTGAGGATTACTATGACATGAGGC < 41bp 0.744404116044525 0.478962017858599 0.2593631 0.12601268 prediction 0.488808232089051 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128625387 chr4:128625385 synonymous SNV . 0 19 hm1A_associated_SNPs_7858 0 0 0 3 128625383 128625400 mRNA hsa-miR-1297 INTU miRanda miRanda
2192 chr12 112174796 112174796 1 + C T LGG 112174798 + 112174778 112174818 41 CTACAGGGAGTCTACAAGCGATCACTCACAGGTAATGGGAT CTACAGGGAGTCTACAAGTGATCACTCACAGGTAATGGGAT < 41bp 0.744355572356813 0.47063127865592 0.21312886 0.10870448 prediction 0.488711144713627 Functional Loss - ACAD10 ENSG00000111271 CDS Human protein_coding chr12:112174798 chr12:112174796 stopgain 0.724 0 19 hm1A_associated_SNPs_7866 0 0 1 1 112174795 112174808 mRNA hsa-miR-874 ACAD10 miRanda miRanda
2192 chr3 52812421 52812421 1 + C A LUSC 52812423 + 52812403 52812443 41 CACCTCTCGCTTCGCCCACTATGTTGTCACCAGCCAAGTGG CACCTCTCGCTTCGCCCAATATGTTGTCACCAGCCAAGTGG < 41bp 0.797393941390085 0.553103195772829 0.21229094 0.25344563 prediction 0.488581491234514 Functional Loss - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52812423 chr3:52812421 nonsynonymous SNV 0.998 4 19 hm1A_associated_SNPs_7875 0 0 0 1 52812415 52812437 mRNA hsa-miR-138 ITIH1 miRanda miRanda
2192 chr2 242689642 242689642 1 + C T SKCM 242689644 + 242689624 242689664 41 TGAGATCCTGTCTGCATTCGAGTTCATGGATGCTGTGTGCA TGAGATCCTGTCTGCATTTGAGTTCATGGATGCTGTGTGCA < 41bp 0.7431026170773 0.480662523038598 0.20174935 0.14855981 prediction 0.4862052341546 Functional Loss - D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242689644 chr2:242689642 synonymous SNV . 0 19 hm1A_associated_SNPs_8036 0 0 1 3 242689638 242689658 mRNA hsa-miR-29a D2HGDH miRanda miRanda
2192 chr2 242689642 242689642 1 + C T SKCM 242689644 + 242689624 242689664 41 TGAGATCCTGTCTGCATTCGAGTTCATGGATGCTGTGTGCA TGAGATCCTGTCTGCATTTGAGTTCATGGATGCTGTGTGCA < 41bp 0.7431026170773 0.480662523038598 0.20174935 0.14855981 prediction 0.4862052341546 Functional Loss - D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242689644 chr2:242689642 synonymous SNV . 0 19 hm1A_associated_SNPs_8036 0 0 1 3 242689636 242689658 mRNA hsa-miR-29b D2HGDH miRanda miRanda
2192 chr2 242689642 242689642 1 + C T SKCM 242689644 + 242689624 242689664 41 TGAGATCCTGTCTGCATTCGAGTTCATGGATGCTGTGTGCA TGAGATCCTGTCTGCATTTGAGTTCATGGATGCTGTGTGCA < 41bp 0.7431026170773 0.480662523038598 0.20174935 0.14855981 prediction 0.4862052341546 Functional Loss - D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242689644 chr2:242689642 synonymous SNV . 0 19 hm1A_associated_SNPs_8036 0 0 1 3 242689638 242689658 mRNA hsa-miR-29c D2HGDH miRanda miRanda
2192 chr9 93636530 93636530 1 + C A UCEC 93636532 + 93636512 93636552 41 AGAGAGTACTGTGTCATTCAATCCGTATGAGCCAGAACTTG AGAGAGTACTGTGTCATTAAATCCGTATGAGCCAGAACTTG < 41bp 0.752137567465154 0.509482542417497 0.23341748 0.17182156 prediction 0.485310050095314 Functional Loss - SYK ENSG00000165025 CDS Human protein_coding chr9:93636532 chr9:93636530 nonsynonymous SNV 0.094 0 19 hm1A_associated_SNPs_8108 0 0 0 1 93636524 93636547 mRNA hsa-miR-149 SYK miRanda miRanda
2192 chr11 85989562 85989562 1 + C T SKCM 85989564 + 85989544 85989584 41 TGGCGCTGGGATCGACTTCGATAAAATACTTTTGCCTAATC TGGCGCTGGGATCGACTTTGATAAAATACTTTTGCCTAATC < 41bp 0.878053977404963 0.635955012579502 0.45774734 0.12434241 prediction 0.484197929650922 Functional Loss - EED ENSG00000074266 CDS Human protein_coding chr11:85989564 chr11:85989562 stopgain 1.000 1 19 hm1A_associated_SNPs_8184 0 0 1 2 85989559 85989582 mRNA hsa-miR-182 EED miRanda miRanda
2192 chr11 85989562 85989562 1 + C T SKCM 85989564 + 85989544 85989584 41 TGGCGCTGGGATCGACTTCGATAAAATACTTTTGCCTAATC TGGCGCTGGGATCGACTTTGATAAAATACTTTTGCCTAATC < 41bp 0.878053977404963 0.635955012579502 0.45774734 0.12434241 prediction 0.484197929650922 Functional Loss - EED ENSG00000074266 CDS Human protein_coding chr11:85989564 chr11:85989562 stopgain 1.000 1 19 hm1A_associated_SNPs_8184 0 0 1 2 85989552 85989572 mRNA hsa-miR-590-3p EED miRanda miRanda
2192 chr11 134181047 134181047 1 + C A UCEC 134181049 + 134181029 134181069 41 CTCCCGCTGTGGGACGCCCTATCCTACTTAAATGAGGTGCG CTCCCGCTGTGGGACGCCATATCCTACTTAAATGAGGTGCG < 41bp 0.742051695985229 0.498949963151745 0.25050092 0.21955845 prediction 0.484103391970458 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134181049 chr11:134181047 nonsynonymous SNV 0.003 3 19 hm1A_associated_SNPs_8193 0 0 0 1 134181047 134181064 mRNA hsa-miR-149 GLB1L3 miRanda miRanda
2192 chr1 150463934 150463934 1 + C T OV 150463936 + 150463916 150463956 41 GAACTTACAGCTGCTGCTCGACCCTTCCGGAGGCTAGAGGC GAACTTACAGCTGCTGCTTGACCCTTCCGGAGGCTAGAGGC < 41bp 0.741710337131657 0.478085467553226 0.2762549 0.146546 prediction 0.483420674263314 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463936 chr1:150463934 stopgain 0.932 0 19 hm1A_associated_SNPs_8251 0 0 1 6 150463913 150463934 mRNA hsa-miR-15a TARS2 miRanda miRanda
2192 chr1 150463934 150463934 1 + C T OV 150463936 + 150463916 150463956 41 GAACTTACAGCTGCTGCTCGACCCTTCCGGAGGCTAGAGGC GAACTTACAGCTGCTGCTTGACCCTTCCGGAGGCTAGAGGC < 41bp 0.741710337131657 0.478085467553226 0.2762549 0.146546 prediction 0.483420674263314 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463936 chr1:150463934 stopgain 0.932 0 19 hm1A_associated_SNPs_8251 0 0 1 6 150463910 150463934 mRNA hsa-miR-16 TARS2 miRanda miRanda
2192 chr1 150463934 150463934 1 + C T OV 150463936 + 150463916 150463956 41 GAACTTACAGCTGCTGCTCGACCCTTCCGGAGGCTAGAGGC GAACTTACAGCTGCTGCTTGACCCTTCCGGAGGCTAGAGGC < 41bp 0.741710337131657 0.478085467553226 0.2762549 0.146546 prediction 0.483420674263314 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463936 chr1:150463934 stopgain 0.932 0 19 hm1A_associated_SNPs_8251 0 0 1 6 150463913 150463934 mRNA hsa-miR-15b TARS2 miRanda miRanda
2192 chr1 150463934 150463934 1 + C T OV 150463936 + 150463916 150463956 41 GAACTTACAGCTGCTGCTCGACCCTTCCGGAGGCTAGAGGC GAACTTACAGCTGCTGCTTGACCCTTCCGGAGGCTAGAGGC < 41bp 0.741710337131657 0.478085467553226 0.2762549 0.146546 prediction 0.483420674263314 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463936 chr1:150463934 stopgain 0.932 0 19 hm1A_associated_SNPs_8251 0 0 1 6 150463913 150463934 mRNA hsa-miR-195 TARS2 miRanda miRanda
2192 chr1 150463934 150463934 1 + C T OV 150463936 + 150463916 150463956 41 GAACTTACAGCTGCTGCTCGACCCTTCCGGAGGCTAGAGGC GAACTTACAGCTGCTGCTTGACCCTTCCGGAGGCTAGAGGC < 41bp 0.741710337131657 0.478085467553226 0.2762549 0.146546 prediction 0.483420674263314 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463936 chr1:150463934 stopgain 0.932 0 19 hm1A_associated_SNPs_8251 0 0 1 6 150463912 150463934 mRNA hsa-miR-424 TARS2 miRanda miRanda
2192 chr1 150463934 150463934 1 + C T OV 150463936 + 150463916 150463956 41 GAACTTACAGCTGCTGCTCGACCCTTCCGGAGGCTAGAGGC GAACTTACAGCTGCTGCTTGACCCTTCCGGAGGCTAGAGGC < 41bp 0.741710337131657 0.478085467553226 0.2762549 0.146546 prediction 0.483420674263314 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463936 chr1:150463934 stopgain 0.932 0 19 hm1A_associated_SNPs_8251 0 0 1 6 150463915 150463934 mRNA hsa-miR-497 TARS2 miRanda miRanda
2192 chr19 55019341 55019341 1 + C A UCEC 55019343 + 55019323 55019363 41 CGGGCTTTATCGCTGCCTCTATTATAAGCCCCCTGGATGGT CGGGCTTTATCGCTGCCTATATTATAAGCCCCCTGGATGGT < 41bp 0.741178325367534 0.457304578393508 0.35498968 0.15008217 prediction 0.482356650735068 Functional Loss - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019343 chr19:55019341 synonymous SNV . 0 19 hm1A_associated_SNPs_8322 0 0 0 2 55019326 55019349 mRNA hsa-miR-374a LAIR2 miRanda miRanda
2192 chr19 55019341 55019341 1 + C A UCEC 55019343 + 55019323 55019363 41 CGGGCTTTATCGCTGCCTCTATTATAAGCCCCCTGGATGGT CGGGCTTTATCGCTGCCTATATTATAAGCCCCCTGGATGGT < 41bp 0.741178325367534 0.457304578393508 0.35498968 0.15008217 prediction 0.482356650735068 Functional Loss - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019343 chr19:55019341 synonymous SNV . 0 19 hm1A_associated_SNPs_8322 0 0 0 2 55019326 55019349 mRNA hsa-miR-374b LAIR2 miRanda miRanda
2192 chr5 54721148 54721148 1 + C G rs143095107 54721150 + 54721130 54721170 41 TCTTTCTTTGAAGAAATCCGATACATATACAGCCTACAGTG TCTTTCTTTGAAGAAATCGGATACATATACAGCCTACAGTG < 41bp 0.740962257825213 0.463701343604779 0.08615422 0.052277654 prediction 0.481924515650425 Functional Loss - PLPP1 ENSG00000067113 CDS Human protein_coding chr5:54721150 chr5:54721148 synonymous SNV . 0 19 hm1A_associated_SNPs_8358 0 0 0 2 54721143 54721166 mRNA hsa-miR-485-5p SKIV2L2 miRanda miRanda
2192 chr5 54721148 54721148 1 + C G rs143095107 54721150 + 54721130 54721170 41 TCTTTCTTTGAAGAAATCCGATACATATACAGCCTACAGTG TCTTTCTTTGAAGAAATCGGATACATATACAGCCTACAGTG < 41bp 0.740962257825213 0.463701343604779 0.08615422 0.052277654 prediction 0.481924515650425 Functional Loss - PLPP1 ENSG00000067113 CDS Human protein_coding chr5:54721150 chr5:54721148 synonymous SNV . 0 19 hm1A_associated_SNPs_8358 0 0 0 2 54721127 54721149 mRNA hsa-miR-876-5p SKIV2L2 miRanda miRanda
2192 chr1 166974549 166974549 1 + C T SKCM 166974551 + 166974531 166974571 41 CTTGTAGTGGGGATCTACCAACAAAAATTTCTCAAGGAGCC CTTGTAGTGGGGATCTACTAACAAAAATTTCTCAAGGAGCC < 41bp 0.783048492844672 0.542123750068119 0.18223774 0.12752938 prediction 0.481849485553106 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166974551 chr1:166974549 stopgain 1.000 1 19 hm1A_associated_SNPs_8366 0 0 0 1 166974543 166974564 mRNA hsa-miR-539 MAEL miRanda miRanda
2192 chr16 29096560 29096560 1 + C T COAD 29096562 + 29096542 29096582 41 AGTGATCATTAAGGAAGGCGATGTAGATGTTTCAGATTCTG AGTGATCATTAAGGAAGGTGATGTAGATGTTTCAGATTCTG < 41bp 0.788584512371784 0.547688862108607 0.4322084 0.19576082 prediction 0.481791300526355 Functional Loss - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29096562 chr16:29096560 . . 0 19 hm1A_associated_SNPs_8371 0 0 0 1 29096554 29096575 mRNA hsa-miR-494 RRN3P2 miRanda miRanda
2192 chr1 204507384 204507384 1 + C T UCEC 204507386 + 204507366 204507406 41 AAAAAGAACTACAGAAGACGATATCCCCACACTGCCTACCT AAAAAGAACTACAGAAGATGATATCCCCACACTGCCTACCT < 41bp 0.74063091230931 0.479776646627257 0.31590813 0.1404658 prediction 0.48126182461862 Functional Loss - MDM4 ENSG00000198625 CDS Human protein_coding chr1:204507386 chr1:204507384 stopgain 0.001 0 19 hm1A_associated_SNPs_8406 0 0 1 7 204507384 204507408 mRNA hsa-let-7a MDM4 miRanda miRanda
2192 chr1 204507384 204507384 1 + C T UCEC 204507386 + 204507366 204507406 41 AAAAAGAACTACAGAAGACGATATCCCCACACTGCCTACCT AAAAAGAACTACAGAAGATGATATCCCCACACTGCCTACCT < 41bp 0.74063091230931 0.479776646627257 0.31590813 0.1404658 prediction 0.48126182461862 Functional Loss - MDM4 ENSG00000198625 CDS Human protein_coding chr1:204507386 chr1:204507384 stopgain 0.001 0 19 hm1A_associated_SNPs_8406 0 0 1 7 204507384 204507408 mRNA hsa-let-7d MDM4 miRanda miRanda
2192 chr1 204507384 204507384 1 + C T UCEC 204507386 + 204507366 204507406 41 AAAAAGAACTACAGAAGACGATATCCCCACACTGCCTACCT AAAAAGAACTACAGAAGATGATATCCCCACACTGCCTACCT < 41bp 0.74063091230931 0.479776646627257 0.31590813 0.1404658 prediction 0.48126182461862 Functional Loss - MDM4 ENSG00000198625 CDS Human protein_coding chr1:204507386 chr1:204507384 stopgain 0.001 0 19 hm1A_associated_SNPs_8406 0 0 1 7 204507381 204507402 mRNA hsa-miR-34a MDM4 miRanda miRanda
2192 chr1 204507384 204507384 1 + C T UCEC 204507386 + 204507366 204507406 41 AAAAAGAACTACAGAAGACGATATCCCCACACTGCCTACCT AAAAAGAACTACAGAAGATGATATCCCCACACTGCCTACCT < 41bp 0.74063091230931 0.479776646627257 0.31590813 0.1404658 prediction 0.48126182461862 Functional Loss - MDM4 ENSG00000198625 CDS Human protein_coding chr1:204507386 chr1:204507384 stopgain 0.001 0 19 hm1A_associated_SNPs_8406 0 0 1 7 204507380 204507402 mRNA hsa-miR-34c-5p MDM4 miRanda miRanda
2192 chr1 204507384 204507384 1 + C T UCEC 204507386 + 204507366 204507406 41 AAAAAGAACTACAGAAGACGATATCCCCACACTGCCTACCT AAAAAGAACTACAGAAGATGATATCCCCACACTGCCTACCT < 41bp 0.74063091230931 0.479776646627257 0.31590813 0.1404658 prediction 0.48126182461862 Functional Loss - MDM4 ENSG00000198625 CDS Human protein_coding chr1:204507386 chr1:204507384 stopgain 0.001 0 19 hm1A_associated_SNPs_8406 0 0 1 7 204507381 204507402 mRNA hsa-miR-449a MDM4 miRanda miRanda
2192 chr1 204507384 204507384 1 + C T UCEC 204507386 + 204507366 204507406 41 AAAAAGAACTACAGAAGACGATATCCCCACACTGCCTACCT AAAAAGAACTACAGAAGATGATATCCCCACACTGCCTACCT < 41bp 0.74063091230931 0.479776646627257 0.31590813 0.1404658 prediction 0.48126182461862 Functional Loss - MDM4 ENSG00000198625 CDS Human protein_coding chr1:204507386 chr1:204507384 stopgain 0.001 0 19 hm1A_associated_SNPs_8406 0 0 1 7 204507372 204507396 mRNA hsa-miR-491-5p MDM4 miRanda miRanda
2192 chr1 204507384 204507384 1 + C T UCEC 204507386 + 204507366 204507406 41 AAAAAGAACTACAGAAGACGATATCCCCACACTGCCTACCT AAAAAGAACTACAGAAGATGATATCCCCACACTGCCTACCT < 41bp 0.74063091230931 0.479776646627257 0.31590813 0.1404658 prediction 0.48126182461862 Functional Loss - MDM4 ENSG00000198625 CDS Human protein_coding chr1:204507386 chr1:204507384 stopgain 0.001 0 19 hm1A_associated_SNPs_8406 0 0 1 7 204507381 204507402 mRNA hsa-miR-449b MDM4 miRanda miRanda
2192 chr7 31018852 31018852 1 + T C rs2228078 31018851 + 31018831 31018871 41 CGGCAAAGGTGCTGACATCTATGTGCTAGGCTGCCTCATCA CGGCAAAGGTGCTGACATCTACGTGCTAGGCTGCCTCATCA < 41bp 0.784394393396202 0.543821679283247 0.3483678 0.4771979 prediction 0.481145428225909 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31018851 chr7:31018852 nonsynonymous SNV 0.654 0 22 hm1A_associated_SNPs_8418 1 0 0 2 31018840 31018863 mRNA hsa-miR-16 GHRHR miRanda miRanda
2192 chr7 31018852 31018852 1 + T C rs2228078 31018851 + 31018831 31018871 41 CGGCAAAGGTGCTGACATCTATGTGCTAGGCTGCCTCATCA CGGCAAAGGTGCTGACATCTACGTGCTAGGCTGCCTCATCA < 41bp 0.784394393396202 0.543821679283247 0.3483678 0.4771979 prediction 0.481145428225909 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31018851 chr7:31018852 nonsynonymous SNV 0.654 0 22 hm1A_associated_SNPs_8418 1 0 0 2 31018835 31018855 mRNA hsa-miR-376c GHRHR miRanda miRanda
2192 chr4 158282765 158282765 1 + C T UCEC 158282767 + 158282747 158282787 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGAGCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGAGCCA < 41bp 0.759394625155958 0.518849997334683 0.19447148 0.11091721 prediction 0.481089255642549 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158282767 chr4:158282765 synonymous SNV . 0 19 hm1A_associated_SNPs_8423 0 0 1 11 158282762 158282783 mRNA hsa-miR-23a GRIA2 miRanda miRanda
2192 chr4 158282765 158282765 1 + C T UCEC 158282767 + 158282747 158282787 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGAGCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGAGCCA < 41bp 0.759394625155958 0.518849997334683 0.19447148 0.11091721 prediction 0.481089255642549 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158282767 chr4:158282765 synonymous SNV . 0 19 hm1A_associated_SNPs_8423 0 0 1 11 158282759 158282781 mRNA hsa-miR-181a GRIA2 miRanda miRanda
2192 chr4 158282765 158282765 1 + C T UCEC 158282767 + 158282747 158282787 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGAGCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGAGCCA < 41bp 0.759394625155958 0.518849997334683 0.19447148 0.11091721 prediction 0.481089255642549 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158282767 chr4:158282765 synonymous SNV . 0 19 hm1A_associated_SNPs_8423 0 0 1 11 158282759 158282781 mRNA hsa-miR-181b GRIA2 miRanda miRanda
2192 chr4 158282765 158282765 1 + C T UCEC 158282767 + 158282747 158282787 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGAGCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGAGCCA < 41bp 0.759394625155958 0.518849997334683 0.19447148 0.11091721 prediction 0.481089255642549 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158282767 chr4:158282765 synonymous SNV . 0 19 hm1A_associated_SNPs_8423 0 0 1 11 158282759 158282781 mRNA hsa-miR-181c GRIA2 miRanda miRanda
2192 chr4 158282765 158282765 1 + C T UCEC 158282767 + 158282747 158282787 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGAGCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGAGCCA < 41bp 0.759394625155958 0.518849997334683 0.19447148 0.11091721 prediction 0.481089255642549 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158282767 chr4:158282765 synonymous SNV . 0 19 hm1A_associated_SNPs_8423 0 0 1 11 158282755 158282777 mRNA hsa-miR-204 GRIA2 miRanda miRanda
2192 chr4 158282765 158282765 1 + C T UCEC 158282767 + 158282747 158282787 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGAGCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGAGCCA < 41bp 0.759394625155958 0.518849997334683 0.19447148 0.11091721 prediction 0.481089255642549 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158282767 chr4:158282765 synonymous SNV . 0 19 hm1A_associated_SNPs_8423 0 0 1 11 158282755 158282777 mRNA hsa-miR-211 GRIA2 miRanda miRanda
2192 chr4 158282765 158282765 1 + C T UCEC 158282767 + 158282747 158282787 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGAGCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGAGCCA < 41bp 0.759394625155958 0.518849997334683 0.19447148 0.11091721 prediction 0.481089255642549 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158282767 chr4:158282765 synonymous SNV . 0 19 hm1A_associated_SNPs_8423 0 0 1 11 158282762 158282783 mRNA hsa-miR-23b GRIA2 miRanda miRanda
2192 chr4 158282765 158282765 1 + C T UCEC 158282767 + 158282747 158282787 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGAGCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGAGCCA < 41bp 0.759394625155958 0.518849997334683 0.19447148 0.11091721 prediction 0.481089255642549 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158282767 chr4:158282765 synonymous SNV . 0 19 hm1A_associated_SNPs_8423 0 0 1 11 158282746 158282767 mRNA hsa-miR-126 GRIA2 miRanda miRanda
2192 chr4 158282765 158282765 1 + C T UCEC 158282767 + 158282747 158282787 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGAGCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGAGCCA < 41bp 0.759394625155958 0.518849997334683 0.19447148 0.11091721 prediction 0.481089255642549 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158282767 chr4:158282765 synonymous SNV . 0 19 hm1A_associated_SNPs_8423 0 0 1 11 158282759 158282781 mRNA hsa-miR-181d GRIA2 miRanda miRanda
2192 chr4 158282765 158282765 1 + C T UCEC 158282767 + 158282747 158282787 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGAGCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGAGCCA < 41bp 0.759394625155958 0.518849997334683 0.19447148 0.11091721 prediction 0.481089255642549 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158282767 chr4:158282765 synonymous SNV . 0 19 hm1A_associated_SNPs_8423 0 0 1 11 158282750 158282769 mRNA hsa-miR-487b GRIA2 miRanda miRanda
2192 chr4 158282765 158282765 1 + C T UCEC 158282767 + 158282747 158282787 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGAGCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGAGCCA < 41bp 0.759394625155958 0.518849997334683 0.19447148 0.11091721 prediction 0.481089255642549 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158282767 chr4:158282765 synonymous SNV . 0 19 hm1A_associated_SNPs_8423 0 0 1 11 158282761 158282782 mRNA hsa-miR-543 GRIA2 miRanda miRanda
2192 chr2 71187132 71187132 1 + C A UCEC 71187134 + 71187114 71187154 41 TTCAGACGGGCATTTCTCCTATTGACGTCATGAACAGCATT TTCAGACGGGCATTTCTCATATTGACGTCATGAACAGCATT < 41bp 0.819054153417894 0.578700154896293 0.2977072 0.26352194 prediction 0.480707997043202 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71187134 chr2:71187132 nonsynonymous SNV 0.964 2 19 hm1A_associated_SNPs_8452 0 0 1 1 71187111 71187132 mRNA hsa-miR-539 ATP6V1B1 miRanda miRanda
2192 chr2 133402861 133402861 1 - G A COAD 133402859 - 133402839 133402879 41 CACCCGCCGAAACTGCTGCGAGGACACCGTGTACAGGAGCG CACCCGCCGAAACTGCTGTGAGGACACCGTGTACAGGAGCG < 41bp 0.740353479369846 0.459865019249131 0.60618126 0.43010882 prediction 0.480706958739692 Functional Loss - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133402859 chr2:133402861 synonymous SNV . 0 19 hm1A_associated_SNPs_8453 0 0 0 1 133402842 133402863 mRNA hsa-miR-486-5p LYPD1 miRanda miRanda
2192 chr2 219270491 219270491 1 + T C rs150211800 219270490 + 219270470 219270510 41 TAACGGTTAAGGGGACCCACATACCAGTGCCAAGGGGGATG TAACGGTTAAGGGGACCCACACACCAGTGCCAAGGGGGATG < 41bp 0.746870377116869 0.506588948861198 0.15024427 0.18224412 prediction 0.480562856511341 Functional Loss - CTDSP1 ENSG00000144579 UTR3 Human protein_coding chr2:219270490 chr2:219270491 . . 0 22 hm1A_associated_SNPs_8465 0 0 1 3 219270481 219270503 mRNA hsa-miR-96 CTDSP1 miRanda miRanda
2192 chr2 219270491 219270491 1 + T C rs150211800 219270490 + 219270470 219270510 41 TAACGGTTAAGGGGACCCACATACCAGTGCCAAGGGGGATG TAACGGTTAAGGGGACCCACACACCAGTGCCAAGGGGGATG < 41bp 0.746870377116869 0.506588948861198 0.15024427 0.18224412 prediction 0.480562856511341 Functional Loss - CTDSP1 ENSG00000144579 UTR3 Human protein_coding chr2:219270490 chr2:219270491 . . 0 22 hm1A_associated_SNPs_8465 0 0 1 3 219270470 219270492 mRNA hsa-miR-299-3p CTDSP1 miRanda miRanda
2192 chr2 219270491 219270491 1 + T C rs150211800 219270490 + 219270470 219270510 41 TAACGGTTAAGGGGACCCACATACCAGTGCCAAGGGGGATG TAACGGTTAAGGGGACCCACACACCAGTGCCAAGGGGGATG < 41bp 0.746870377116869 0.506588948861198 0.15024427 0.18224412 prediction 0.480562856511341 Functional Loss - CTDSP1 ENSG00000144579 UTR3 Human protein_coding chr2:219270490 chr2:219270491 . . 0 22 hm1A_associated_SNPs_8465 0 0 1 3 219270483 219270503 mRNA hsa-miR-1271 CTDSP1 miRanda miRanda
2192 chr17 62504726 62504726 1 + C A UCEC 62504728 + 62504708 62504748 41 AGAGTGGGTAACCATTGCCAATAACCTTCTTTTTAAGTGTC AGAGTGGGTAACCATTGCAAATAACCTTCTTTTTAAGTGTC < 41bp 0.783190934653906 0.543120560596243 0.052476972 0.04264897 prediction 0.480140748115327 Functional Loss - CEP95 ENSG00000258890 CDS Human protein_coding chr17:62504728 chr17:62504726 synonymous SNV . 0 19 hm1A_associated_SNPs_8496 0 0 1 2 62504710 62504729 mRNA hsa-miR-182 CCDC45 miRanda miRanda
2192 chr17 62504726 62504726 1 + C A UCEC 62504728 + 62504708 62504748 41 AGAGTGGGTAACCATTGCCAATAACCTTCTTTTTAAGTGTC AGAGTGGGTAACCATTGCAAATAACCTTCTTTTTAAGTGTC < 41bp 0.783190934653906 0.543120560596243 0.052476972 0.04264897 prediction 0.480140748115327 Functional Loss - CEP95 ENSG00000258890 CDS Human protein_coding chr17:62504728 chr17:62504726 synonymous SNV . 0 19 hm1A_associated_SNPs_8496 0 0 1 2 62504710 62504735 mRNA hsa-miR-154 CCDC45 miRanda miRanda
2192 chr7 141897286 141897286 1 + C T SARC 141897288 + 141897268 141897308 41 TACCCTGCTTCCTTATCTCTATACTCTGATGCATAAAGCTC TACCCTGCTTCCTTATCTTTATACTCTGATGCATAAAGCTC < 41bp 0.812477731124834 0.572425894868178 0.13985217 0.10807794 prediction 0.480103672513312 Functional Loss - MGAM2 ENSG00000257743 CDS Human protein_coding chr7:141897288 chr7:141897286 synonymous SNV . 0 19 hm1A_associated_SNPs_8500 0 0 0 1 141897286 141897308 mRNA hsa-miR-590-5p LOC100124692 miRanda miRanda
2192 chr5 110407675 110407675 1 + C A LUAD 110407677 + 110407657 110407697 41 AGGGCTGGTGTTAACTTACGACTTCACTAACTGTGACTTTG AGGGCTGGTGTTAACTTAAGACTTCACTAACTGTGACTTTG < 41bp 0.739895688971786 0.498987290047926 0.23028821 0.17540911 prediction 0.479791377943572 Functional Loss - TSLP ENSG00000145777 CDS Human protein_coding chr5:110407677 chr5:110407675 stopgain 0.827 0 19 hm1A_associated_SNPs_8523 0 0 0 3 110407672 110407693 mRNA hsa-miR-27a TSLP miRanda miRanda
2192 chr5 110407675 110407675 1 + C A LUAD 110407677 + 110407657 110407697 41 AGGGCTGGTGTTAACTTACGACTTCACTAACTGTGACTTTG AGGGCTGGTGTTAACTTAAGACTTCACTAACTGTGACTTTG < 41bp 0.739895688971786 0.498987290047926 0.23028821 0.17540911 prediction 0.479791377943572 Functional Loss - TSLP ENSG00000145777 CDS Human protein_coding chr5:110407677 chr5:110407675 stopgain 0.827 0 19 hm1A_associated_SNPs_8523 0 0 0 3 110407673 110407696 mRNA hsa-miR-224 TSLP miRanda miRanda
2192 chr5 110407675 110407675 1 + C A LUAD 110407677 + 110407657 110407697 41 AGGGCTGGTGTTAACTTACGACTTCACTAACTGTGACTTTG AGGGCTGGTGTTAACTTAAGACTTCACTAACTGTGACTTTG < 41bp 0.739895688971786 0.498987290047926 0.23028821 0.17540911 prediction 0.479791377943572 Functional Loss - TSLP ENSG00000145777 CDS Human protein_coding chr5:110407677 chr5:110407675 stopgain 0.827 0 19 hm1A_associated_SNPs_8523 0 0 0 3 110407672 110407693 mRNA hsa-miR-27b TSLP miRanda miRanda
2192 chr1 201975026 201975026 1 + T C rs538318111 201975025 + 201975005 201975045 41 TGGTGGGAACTTACTTCTCTATAGCCCACTGAGCCCCGAGA TGGTGGGAACTTACTTCTCTACAGCCCACTGAGCCCCGAGA < 41bp 0.816732708084572 0.576925916470402 0.32285297 0.25822532 prediction 0.479613583228341 Functional Loss - ELF3-AS1 ENSG00000234678 ncRNA_intronic Human antisense chr1:201975025 chr1:201975026 . . 0 22 hm1A_associated_SNPs_8540 0 0 1 1 201975019 201975040 mRNA hsa-miR-24 RNPEP miRanda miRanda
2192 chr16 67168322 67168322 1 + C T HNSC 67168324 + 67168304 67168344 41 GAGAGTGTAGATGTTCTTCGAGATGGAACTGGACCTGCAGG GAGAGTGTAGATGTTCTTTGAGATGGAACTGGACCTGCAGG < 41bp 0.807616386491422 0.567868968113514 0.16362429 0.09945616 prediction 0.479494836755816 Functional Loss - C16orf70 ENSG00000125149 CDS Human protein_coding chr16:67168324 chr16:67168322 stopgain 1.000 1 19 hm1A_associated_SNPs_8547 0 0 1 1 67168312 67168337 mRNA hsa-miR-145 C16orf70 miRanda miRanda
2192 chr6 146755713 146755713 1 + C T READ 146755715 + 146755695 146755735 41 AGGGAACACGGAAGAAGACGAACTGGAAGAGGAGGAGGAGG AGGGAACACGGAAGAAGATGAACTGGAAGAGGAGGAGGAGG < 41bp 0.784818082804301 0.545517255114082 0.7603614 0.73341835 prediction 0.478601655380439 Functional Loss - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146755715 chr6:146755713 synonymous SNV . 0 19 hm1A_associated_SNPs_8631 0 0 0 1 146755699 146755722 mRNA hsa-miR-145 GRM1 miRanda miRanda
2192 chr6 50696702 50696702 1 + C T LUAD 50696704 + 50696684 50696724 41 CTCCCCACCTGAGTGCCTCAATGCTTCACTCTTGGGAGGCA CTCCCCACCTGAGTGCCTTAATGCTTCACTCTTGGGAGGCA < 41bp 0.830993877142287 0.591889899967459 0.08537099 0.07899317 prediction 0.478207954349656 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50696704 chr6:50696702 synonymous SNV . 0 19 hm1A_associated_SNPs_8660 0 0 0 1 50696702 50696722 mRNA hsa-miR-150 TFAP2D miRanda miRanda
2192 chr17 52991147 52991147 1 + C T COAD 52991149 + 52991129 52991169 41 AGGAGGTGTGGATGTAAGCGAAGTCAAAGAAGTATACCTCG AGGAGGTGTGGATGTAAGTGAAGTCAAAGAAGTATACCTCG < 41bp 0.793307204589109 0.554235664688249 0.31146958 0.18256137 prediction 0.47814307980172 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52991149 chr17:52991147 synonymous SNV . 0 19 hm1A_associated_SNPs_8661 0 0 1 2 52991122 52991148 mRNA hsa-miR-221 TOM1L1 miRanda miRanda
2192 chr17 52991147 52991147 1 + C T COAD 52991149 + 52991129 52991169 41 AGGAGGTGTGGATGTAAGCGAAGTCAAAGAAGTATACCTCG AGGAGGTGTGGATGTAAGTGAAGTCAAAGAAGTATACCTCG < 41bp 0.793307204589109 0.554235664688249 0.31146958 0.18256137 prediction 0.47814307980172 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52991149 chr17:52991147 synonymous SNV . 0 19 hm1A_associated_SNPs_8661 0 0 1 2 52991125 52991148 mRNA hsa-miR-222 TOM1L1 miRanda miRanda
2192 chr3 113321943 113321943 1 + C T CESC 113321945 + 113321925 113321965 41 CAGCTCCGTGGAGGAGAGCGACTTCGACACCATGCCAGACA CAGCTCCGTGGAGGAGAGTGACTTCGACACCATGCCAGACA < 41bp 0.795800999769792 0.55675106204248 0.6043843 0.53743625 prediction 0.478099875454624 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113321945 chr3:113321943 synonymous SNV . 0 19 hm1A_associated_SNPs_8665 0 0 0 5 113321926 113321949 mRNA hsa-miR-520e SIDT1 miRanda miRanda
2192 chr3 113321943 113321943 1 + C T CESC 113321945 + 113321925 113321965 41 CAGCTCCGTGGAGGAGAGCGACTTCGACACCATGCCAGACA CAGCTCCGTGGAGGAGAGTGACTTCGACACCATGCCAGACA < 41bp 0.795800999769792 0.55675106204248 0.6043843 0.53743625 prediction 0.478099875454624 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113321945 chr3:113321943 synonymous SNV . 0 19 hm1A_associated_SNPs_8665 0 0 0 5 113321924 113321949 mRNA hsa-miR-520a-3p SIDT1 miRanda miRanda
2192 chr3 113321943 113321943 1 + C T CESC 113321945 + 113321925 113321965 41 CAGCTCCGTGGAGGAGAGCGACTTCGACACCATGCCAGACA CAGCTCCGTGGAGGAGAGTGACTTCGACACCATGCCAGACA < 41bp 0.795800999769792 0.55675106204248 0.6043843 0.53743625 prediction 0.478099875454624 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113321945 chr3:113321943 synonymous SNV . 0 19 hm1A_associated_SNPs_8665 0 0 0 5 113321926 113321949 mRNA hsa-miR-520b SIDT1 miRanda miRanda
2192 chr3 113321943 113321943 1 + C T CESC 113321945 + 113321925 113321965 41 CAGCTCCGTGGAGGAGAGCGACTTCGACACCATGCCAGACA CAGCTCCGTGGAGGAGAGTGACTTCGACACCATGCCAGACA < 41bp 0.795800999769792 0.55675106204248 0.6043843 0.53743625 prediction 0.478099875454624 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113321945 chr3:113321943 synonymous SNV . 0 19 hm1A_associated_SNPs_8665 0 0 0 5 113321925 113321949 mRNA hsa-miR-520c-3p SIDT1 miRanda miRanda
2192 chr3 113321943 113321943 1 + C T CESC 113321945 + 113321925 113321965 41 CAGCTCCGTGGAGGAGAGCGACTTCGACACCATGCCAGACA CAGCTCCGTGGAGGAGAGTGACTTCGACACCATGCCAGACA < 41bp 0.795800999769792 0.55675106204248 0.6043843 0.53743625 prediction 0.478099875454624 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113321945 chr3:113321943 synonymous SNV . 0 19 hm1A_associated_SNPs_8665 0 0 0 5 113321928 113321949 mRNA hsa-miR-520d-3p SIDT1 miRanda miRanda
2192 chr9 138441749 138441749 1 + C A COAD 138441751 + 138441731 138441771 41 AGCCCGGACCACCTGGACCTACCCTCCAGCCATGACCCTTC AGCCCGGACCACCTGGACATACCCTCCAGCCATGACCCTTC < 41bp 0.766548663128744 0.52750056995395 0.52080864 0.4217625 prediction 0.478096186349589 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138441751 chr9:138441749 nonsynonymous SNV 0.014 0 19 hm1A_associated_SNPs_8667 0 0 0 2 138441732 138441757 mRNA hsa-let-7b OBP2A miRanda miRanda
2192 chr9 138441749 138441749 1 + C A COAD 138441751 + 138441731 138441771 41 AGCCCGGACCACCTGGACCTACCCTCCAGCCATGACCCTTC AGCCCGGACCACCTGGACATACCCTCCAGCCATGACCCTTC < 41bp 0.766548663128744 0.52750056995395 0.52080864 0.4217625 prediction 0.478096186349589 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138441751 chr9:138441749 nonsynonymous SNV 0.014 0 19 hm1A_associated_SNPs_8667 0 0 0 2 138441732 138441757 mRNA hsa-let-7c OBP2A miRanda miRanda
2192 chr17 76399860 76399860 1 + C T SKCM 76399862 + 76399842 76399882 41 GCCCTTCGAGATTCAAATCGATGAGATTGTCACTGAGACCC GCCCTTCGAGATTCAAATTGATGAGATTGTCACTGAGACCC < 41bp 0.828282738700875 0.589684158139416 0.67120385 0.29258835 prediction 0.477197161122918 Functional Loss - PGS1 ENSG00000087157 CDS Human protein_coding chr17:76399862 chr17:76399860 synonymous SNV . 0 19 hm1A_associated_SNPs_8738 0 0 1 3 76399849 76399870 mRNA hsa-miR-216a PGS1 miRanda miRanda
2192 chr17 76399860 76399860 1 + C T SKCM 76399862 + 76399842 76399882 41 GCCCTTCGAGATTCAAATCGATGAGATTGTCACTGAGACCC GCCCTTCGAGATTCAAATTGATGAGATTGTCACTGAGACCC < 41bp 0.828282738700875 0.589684158139416 0.67120385 0.29258835 prediction 0.477197161122918 Functional Loss - PGS1 ENSG00000087157 CDS Human protein_coding chr17:76399862 chr17:76399860 synonymous SNV . 0 19 hm1A_associated_SNPs_8738 0 0 1 3 76399853 76399876 mRNA hsa-miR-301a PGS1 miRanda miRanda
2192 chr17 76399860 76399860 1 + C T SKCM 76399862 + 76399842 76399882 41 GCCCTTCGAGATTCAAATCGATGAGATTGTCACTGAGACCC GCCCTTCGAGATTCAAATTGATGAGATTGTCACTGAGACCC < 41bp 0.828282738700875 0.589684158139416 0.67120385 0.29258835 prediction 0.477197161122918 Functional Loss - PGS1 ENSG00000087157 CDS Human protein_coding chr17:76399862 chr17:76399860 synonymous SNV . 0 19 hm1A_associated_SNPs_8738 0 0 1 3 76399853 76399876 mRNA hsa-miR-301b PGS1 miRanda miRanda
2192 chr16 8941586 8941586 1 + C T STAD 8941588 + 8941568 8941608 41 CGTGTCTTTCCAGGGTGGCAATGACCATGAGATCTTCACAG CGTGTCTTTCCAGGGTGGTAATGACCATGAGATCTTCACAG < 41bp 0.738593477731581 0.431505839637802 0.09422648 0.097495675 prediction 0.477186955463163 Functional Loss - PMM2 ENSG00000140650 CDS Human protein_coding chr16:8941588 chr16:8941586 synonymous SNV . 0 19 hm1A_associated_SNPs_8740 0 0 1 2 8941581 8941590 mRNA hsa-miR-25 PMM2 miRanda miRanda
2192 chr16 8941586 8941586 1 + C T STAD 8941588 + 8941568 8941608 41 CGTGTCTTTCCAGGGTGGCAATGACCATGAGATCTTCACAG CGTGTCTTTCCAGGGTGGTAATGACCATGAGATCTTCACAG < 41bp 0.738593477731581 0.431505839637802 0.09422648 0.097495675 prediction 0.477186955463163 Functional Loss - PMM2 ENSG00000140650 CDS Human protein_coding chr16:8941588 chr16:8941586 synonymous SNV . 0 19 hm1A_associated_SNPs_8740 0 0 1 2 8941581 8941590 mRNA hsa-miR-367 PMM2 miRanda miRanda
2192 chr8 67361109 67361109 1 + C T UCEC 67361111 + 67361091 67361131 41 ATGTTTTAGGCATCACTTCGAGAGCCATCAAACCCACACTG ATGTTTTAGGCATCACTTTGAGAGCCATCAAACCCACACTG < 41bp 0.794504528760083 0.555978977002618 0.15897274 0.07822856 prediction 0.477051103514931 Functional Loss - ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67361111 chr8:67361109 nonsynonymous SNV 0.961 2 19 hm1A_associated_SNPs_8756 0 0 0 1 67361109 67361133 mRNA hsa-miR-199b-5p ADHFE1 miRanda miRanda
2192 chr14 39587279 39587279 1 + C T BLCA 39587281 + 39587261 39587301 41 AACAAGTGGCACAGTTTTCAACTGTTCGACAGGTAAGTGTC AACAAGTGGCACAGTTTTTAACTGTTCGACAGGTAAGTGTC < 41bp 0.738398734844882 0.486298203708033 0.04470381 0.05272481 prediction 0.476797469689764 Functional Loss - GEMIN2 ENSG00000092208 CDS Human protein_coding chr14:39587281 chr14:39587279 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_8770 0 0 1 1 39587278 39587292 mRNA hsa-miR-23a SIP1 miRanda miRanda
2192 chr11 46404276 46404276 1 + C T LUSC 46404278 + 46404258 46404298 41 CACCAAGCCCTGCACCCCCAAGACCAAAGCAAAGGCCAAAG CACCAAGCCCTGCACCCCTAAGACCAAAGCAAAGGCCAAAG < 41bp 0.79528739122567 0.556894352258208 0.4040805 0.44356817 prediction 0.476786077934924 Functional Loss - MDK ENSG00000110492 CDS Human protein_coding chr11:46404278 chr11:46404276 synonymous SNV 0.998 0 19 hm1A_associated_SNPs_8772 0 0 1 1 46404265 46404287 mRNA hsa-miR-9 MDK miRanda miRanda
2192 chr3 190321958 190321958 1 + C T COAD 190321960 + 190321940 190321980 41 GACACCATGAGGCAAATCCAAGTGTTTGAAGATGAGCCAGC GACACCATGAGGCAAATCTAAGTGTTTGAAGATGAGCCAGC < 41bp 0.75814828121548 0.519854011744974 0.1108706 0.11980909 prediction 0.476588538941012 Functional Loss - IL1RAP ENSG00000196083 CDS Human protein_coding chr3:190321960 chr3:190321958 stopgain 1.000 1 19 hm1A_associated_SNPs_8786 0 0 1 1 190321937 190321959 mRNA hsa-miR-876-5p IL1RAP miRanda miRanda
2192 chr16 55539577 55539577 1 + C G rs556071860 55539579 + 55539559 55539599 41 AGGCGCCCCTTCCCCCTCCAATCCCACCAACCCTCAGAGCC AGGCGCCCCTTCCCCCTCGAATCCCACCAACCCTCAGAGCC < 41bp 0.773658516997366 0.535605646518788 0.47593543 0.36766118 prediction 0.476105740957156 Functional Loss - MMP2 ENSG00000087245 UTR3 Human protein_coding chr16:55539579 chr16:55539577 . . 0 19 hm1A_associated_SNPs_8833 0 0 0 1 55539572 55539593 mRNA hsa-miR-296-3p MMP2 miRanda miRanda
2192 chr5 132440144 132440144 1 + C G rs181140417 132440146 + 132440126 132440166 41 TGATTCCAACACTTGTTTCTATTAAAACAGACTATTATAAA TGATTCCAACACTTGTTTGTATTAAAACAGACTATTATAAA < 41bp 0.73785545963159 0.448918740584417 0.081716985 0.04910785 prediction 0.475710919263181 Functional Loss - HSPA4 ENSG00000170606 UTR3 Human protein_coding chr5:132440146 chr5:132440144 . . 0 19 hm1A_associated_SNPs_8865 0 0 1 3 132440144 132440165 mRNA hsa-miR-374a HSPA4 miRanda miRanda
2192 chr5 132440144 132440144 1 + C G rs181140417 132440146 + 132440126 132440166 41 TGATTCCAACACTTGTTTCTATTAAAACAGACTATTATAAA TGATTCCAACACTTGTTTGTATTAAAACAGACTATTATAAA < 41bp 0.73785545963159 0.448918740584417 0.081716985 0.04910785 prediction 0.475710919263181 Functional Loss - HSPA4 ENSG00000170606 UTR3 Human protein_coding chr5:132440146 chr5:132440144 . . 0 19 hm1A_associated_SNPs_8865 0 0 1 3 132440129 132440145 mRNA hsa-miR-494 HSPA4 miRanda miRanda
2192 chr5 132440144 132440144 1 + C G rs181140417 132440146 + 132440126 132440166 41 TGATTCCAACACTTGTTTCTATTAAAACAGACTATTATAAA TGATTCCAACACTTGTTTGTATTAAAACAGACTATTATAAA < 41bp 0.73785545963159 0.448918740584417 0.081716985 0.04910785 prediction 0.475710919263181 Functional Loss - HSPA4 ENSG00000170606 UTR3 Human protein_coding chr5:132440146 chr5:132440144 . . 0 19 hm1A_associated_SNPs_8865 0 0 1 3 132440144 132440165 mRNA hsa-miR-374b HSPA4 miRanda miRanda
2192 chr1 227920197 227920197 1 + C T LUAD 227920199 + 227920179 227920219 41 TCTGGAAGTCGGGGTGCGCAACCAAGGAGGCCAGCACCTCT TCTGGAAGTCGGGGTGCGTAACCAAGGAGGCCAGCACCTCT < 41bp 0.75346384687578 0.515694398319257 0.2835182 0.26578063 prediction 0.475538897113046 Functional Loss - JMJD4 ENSG00000081692 CDS Human protein_coding chr1:227920199 chr1:227920197 nonsynonymous SNV 0.004 0 19 hm1A_associated_SNPs_8885 0 0 0 1 227920188 227920213 mRNA hsa-miR-149 LOC100130093 miRanda miRanda
2192 chr19 12783928 12783928 1 + C T STAD 12783930 + 12783910 12783950 41 CACAGGGGAGCTGCTGGGCGAGTGAGTCCTTGTGGTCGTGG CACAGGGGAGCTGCTGGGTGAGTGAGTCCTTGTGGTCGTGG < 41bp 0.755324395524368 0.517688718353519 0.3924825 0.3351593 prediction 0.475271354341698 Functional Loss - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12783930 chr19:12783928 synonymous SNV . 0 19 hm1A_associated_SNPs_8908 0 0 0 1 12783923 12783930 mRNA hsa-miR-328 WDR83 miRanda miRanda
2192 chr2 220136576 220136576 1 + C A UCEC 220136578 + 220136558 220136598 41 AGGCTTTAAGGTTGATATCAATCACCAGCCTCCCACTGTGG AGGCTTTAAGGTTGATATAAATCACCAGCCTCCCACTGTGG < 41bp 0.842650775106952 0.605015450813368 0.108467996 0.09947428 prediction 0.475270648587168 Functional Loss - TUBA4B ENSG00000243910 ncRNA_exonic Human protein_coding chr2:220136578 chr2:220136576 . . 0 19 hm1A_associated_SNPs_8909 0 0 0 2 220136565 220136587 mRNA hsa-miR-138 TUBA4B miRanda miRanda
2192 chr2 220136576 220136576 1 + C A UCEC 220136578 + 220136558 220136598 41 AGGCTTTAAGGTTGATATCAATCACCAGCCTCCCACTGTGG AGGCTTTAAGGTTGATATAAATCACCAGCCTCCCACTGTGG < 41bp 0.842650775106952 0.605015450813368 0.108467996 0.09947428 prediction 0.475270648587168 Functional Loss - TUBA4B ENSG00000243910 ncRNA_exonic Human protein_coding chr2:220136578 chr2:220136576 . . 0 19 hm1A_associated_SNPs_8909 0 0 0 2 220136568 220136590 mRNA hsa-miR-485-5p TUBA4B miRanda miRanda
2192 chr11 47259480 47259480 1 + C T UCEC 47259482 + 47259462 47259502 41 TTATGAATTGAGGACGATCGACGTGTTCGATGGAAACTCAG TTATGAATTGAGGACGATTGACGTGTTCGATGGAAACTCAG < 41bp 0.830472403328194 0.592944523331237 0.48432684 0.26353613 prediction 0.475055759993914 Functional Loss - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47259482 chr11:47259480 synonymous SNV . 0 19 hm1A_associated_SNPs_8927 0 0 1 2 47259480 47259505 mRNA hsa-miR-125b DDB2 miRanda miRanda
2192 chr11 47259480 47259480 1 + C T UCEC 47259482 + 47259462 47259502 41 TTATGAATTGAGGACGATCGACGTGTTCGATGGAAACTCAG TTATGAATTGAGGACGATTGACGTGTTCGATGGAAACTCAG < 41bp 0.830472403328194 0.592944523331237 0.48432684 0.26353613 prediction 0.475055759993914 Functional Loss - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47259482 chr11:47259480 synonymous SNV . 0 19 hm1A_associated_SNPs_8927 0 0 1 2 47259480 47259505 mRNA hsa-miR-125a-5p DDB2 miRanda miRanda
2192 chr20 3893220 3893220 1 + C T UCEC 3893222 + 3893202 3893242 41 AAAGTGGATAAACTAGTACGAGATATTTATGGAGGGGACTA AAAGTGGATAAACTAGTATGAGATATTTATGGAGGGGACTA < 41bp 0.834678490867062 0.59730125276403 0.15431407 0.13973692 prediction 0.474754476206064 Functional Loss - PANK2 ENSG00000125779 CDS Human protein_coding chr20:3893222 chr20:3893220 stopgain 0.995 1 19 hm1A_associated_SNPs_8955 0 0 1 1 3893203 3893224 mRNA hsa-miR-487b PANK2 miRanda miRanda
2192 chr22 36055294 36055294 1 + C T STAD 36055296 + 36055276 36055316 41 TTGCGGGAACAACACTGGCGATGACCAAAAATGCTCGCGTG TTGCGGGAACAACACTGGTGATGACCAAAAATGCTCGCGTG < 41bp 0.812852112773617 0.57548880449707 0.7384937 0.60116947 prediction 0.474726616553095 Functional Loss - APOL6 ENSG00000221963 CDS Human protein_coding chr22:36055296 chr22:36055294 nonsynonymous SNV 0.010 0 19 hm1A_associated_SNPs_8956 0 0 1 2 36055272 36055294 mRNA hsa-miR-199a-5p APOL6 miRanda miRanda
2192 chr22 36055294 36055294 1 + C T STAD 36055296 + 36055276 36055316 41 TTGCGGGAACAACACTGGCGATGACCAAAAATGCTCGCGTG TTGCGGGAACAACACTGGTGATGACCAAAAATGCTCGCGTG < 41bp 0.812852112773617 0.57548880449707 0.7384937 0.60116947 prediction 0.474726616553095 Functional Loss - APOL6 ENSG00000221963 CDS Human protein_coding chr22:36055296 chr22:36055294 nonsynonymous SNV 0.010 0 19 hm1A_associated_SNPs_8956 0 0 1 2 36055272 36055294 mRNA hsa-miR-199b-5p APOL6 miRanda miRanda
2192 chrX 140985578 140985578 1 + C A ESCA 140985580 + 140985560 140985600 41 CTACTGCCATGGCCAGTGCAAGCCCCAGTGTCATGTCCACC CTACTGCCATGGCCAGTGAAAGCCCCAGTGTCATGTCCACC < 41bp 0.782477854945191 0.545236968907868 0.20267883 0.17613593 prediction 0.474481772074646 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140985580 chrX:140985578 nonsynonymous SNV 0.012 0 19 hm1A_associated_SNPs_8974 0 0 0 1 140985572 140985594 mRNA hsa-miR-425 MAGEC3 miRanda miRanda
2192 chr12 88566449 88566449 1 + C T PAAD 88566451 + 88566431 88566471 41 GGATTTGTTGTTGCCGAGCGAGTATTATATGTTCCCAGCAT GGATTTGTTGTTGCCGAGTGAGTATTATATGTTCCCAGCAT < 41bp 0.737072673444247 0.465991760415063 0.19922242 0.113361865 prediction 0.474145346888494 Functional Loss - TMTC3 ENSG00000139324 CDS Human protein_coding chr12:88566451 chr12:88566449 stopgain 1.000 1 19 hm1A_associated_SNPs_9009 0 0 1 4 88566435 88566457 mRNA hsa-miR-200b TMTC3 miRanda miRanda
2192 chr12 88566449 88566449 1 + C T PAAD 88566451 + 88566431 88566471 41 GGATTTGTTGTTGCCGAGCGAGTATTATATGTTCCCAGCAT GGATTTGTTGTTGCCGAGTGAGTATTATATGTTCCCAGCAT < 41bp 0.737072673444247 0.465991760415063 0.19922242 0.113361865 prediction 0.474145346888494 Functional Loss - TMTC3 ENSG00000139324 CDS Human protein_coding chr12:88566451 chr12:88566449 stopgain 1.000 1 19 hm1A_associated_SNPs_9009 0 0 1 4 88566434 88566457 mRNA hsa-miR-200c TMTC3 miRanda miRanda
2192 chr12 88566449 88566449 1 + C T PAAD 88566451 + 88566431 88566471 41 GGATTTGTTGTTGCCGAGCGAGTATTATATGTTCCCAGCAT GGATTTGTTGTTGCCGAGTGAGTATTATATGTTCCCAGCAT < 41bp 0.737072673444247 0.465991760415063 0.19922242 0.113361865 prediction 0.474145346888494 Functional Loss - TMTC3 ENSG00000139324 CDS Human protein_coding chr12:88566451 chr12:88566449 stopgain 1.000 1 19 hm1A_associated_SNPs_9009 0 0 1 4 88566438 88566460 mRNA hsa-miR-374a TMTC3 miRanda miRanda
2192 chr12 88566449 88566449 1 + C T PAAD 88566451 + 88566431 88566471 41 GGATTTGTTGTTGCCGAGCGAGTATTATATGTTCCCAGCAT GGATTTGTTGTTGCCGAGTGAGTATTATATGTTCCCAGCAT < 41bp 0.737072673444247 0.465991760415063 0.19922242 0.113361865 prediction 0.474145346888494 Functional Loss - TMTC3 ENSG00000139324 CDS Human protein_coding chr12:88566451 chr12:88566449 stopgain 1.000 1 19 hm1A_associated_SNPs_9009 0 0 1 4 88566438 88566460 mRNA hsa-miR-374b TMTC3 miRanda miRanda
2192 chr2 37468844 37468844 1 + C T UCEC 37468846 + 37468826 37468866 41 GAGAAGGTCCCGTTAGAGCGAAATGCTGGATCCCCAGTGTA GAGAAGGTCCCGTTAGAGTGAAATGCTGGATCCCCAGTGTA < 41bp 0.736697618212064 0.484530122224565 0.1817089 0.11067101 prediction 0.473395236424128 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37468846 chr2:37468844 stopgain 0.224 0 19 hm1A_associated_SNPs_9082 0 0 1 1 37468834 37468855 mRNA hsa-miR-338-3p C2orf56 miRanda miRanda
2192 chr20 34560590 34560590 1 + C G SKCM 34560592 + 34560572 34560612 41 GATATCATCATAATGATCCGAGTGTGTAAAATGTTCCGCCA GATATCATCATAATGATCGGAGTGTGTAAAATGTTCCGCCA < 41bp 0.736643772583969 0.497739544299214 0.24429214 0.23402432 prediction 0.473287545167939 Functional Loss - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34560592 chr20:34560590 nonsynonymous SNV 0.975 3 19 hm1A_associated_SNPs_9090 0 0 0 3 34560571 34560592 mRNA hsa-miR-127-3p C20orf152 miRanda miRanda
2192 chr20 34560590 34560590 1 + C G SKCM 34560592 + 34560572 34560612 41 GATATCATCATAATGATCCGAGTGTGTAAAATGTTCCGCCA GATATCATCATAATGATCGGAGTGTGTAAAATGTTCCGCCA < 41bp 0.736643772583969 0.497739544299214 0.24429214 0.23402432 prediction 0.473287545167939 Functional Loss - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34560592 chr20:34560590 nonsynonymous SNV 0.975 3 19 hm1A_associated_SNPs_9090 0 0 0 3 34560578 34560599 mRNA hsa-miR-362-3p C20orf152 miRanda miRanda
2192 chr20 34560590 34560590 1 + C G SKCM 34560592 + 34560572 34560612 41 GATATCATCATAATGATCCGAGTGTGTAAAATGTTCCGCCA GATATCATCATAATGATCGGAGTGTGTAAAATGTTCCGCCA < 41bp 0.736643772583969 0.497739544299214 0.24429214 0.23402432 prediction 0.473287545167939 Functional Loss - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34560592 chr20:34560590 nonsynonymous SNV 0.975 3 19 hm1A_associated_SNPs_9090 0 0 0 3 34560578 34560599 mRNA hsa-miR-329 C20orf152 miRanda miRanda
2192 chr2 109002778 109002778 1 + C T SKCM 109002780 + 109002760 109002800 41 CAATGGCAAACTATTCATCGATTCCTGCTGAAATCATGGAC CAATGGCAAACTATTCATTGATTCCTGCTGAAATCATGGAC < 41bp 0.736444886056191 0.424773589991756 0.43378443 0.11262995 prediction 0.472889772112382 Functional Loss - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:109002780 chr2:109002778 nonsynonymous SNV 0.007 2 19 hm1A_associated_SNPs_9129 0 0 1 1 109002769 109002790 mRNA hsa-miR-214 SULT1C4 miRanda miRanda
2192 chr3 113321949 113321949 1 + C T STAD 113321951 + 113321931 113321971 41 CGTGGAGGAGAGCGACTTCGACACCATGCCAGACATTGAGA CGTGGAGGAGAGCGACTTTGACACCATGCCAGACATTGAGA < 41bp 0.79739769637581 0.560977394060596 0.6228326 0.47324455 prediction 0.472840604630429 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113321951 chr3:113321949 synonymous SNV . 0 19 hm1A_associated_SNPs_9136 0 0 0 5 113321926 113321949 mRNA hsa-miR-520e SIDT1 miRanda miRanda
2192 chr3 113321949 113321949 1 + C T STAD 113321951 + 113321931 113321971 41 CGTGGAGGAGAGCGACTTCGACACCATGCCAGACATTGAGA CGTGGAGGAGAGCGACTTTGACACCATGCCAGACATTGAGA < 41bp 0.79739769637581 0.560977394060596 0.6228326 0.47324455 prediction 0.472840604630429 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113321951 chr3:113321949 synonymous SNV . 0 19 hm1A_associated_SNPs_9136 0 0 0 5 113321924 113321949 mRNA hsa-miR-520a-3p SIDT1 miRanda miRanda
2192 chr3 113321949 113321949 1 + C T STAD 113321951 + 113321931 113321971 41 CGTGGAGGAGAGCGACTTCGACACCATGCCAGACATTGAGA CGTGGAGGAGAGCGACTTTGACACCATGCCAGACATTGAGA < 41bp 0.79739769637581 0.560977394060596 0.6228326 0.47324455 prediction 0.472840604630429 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113321951 chr3:113321949 synonymous SNV . 0 19 hm1A_associated_SNPs_9136 0 0 0 5 113321926 113321949 mRNA hsa-miR-520b SIDT1 miRanda miRanda
2192 chr3 113321949 113321949 1 + C T STAD 113321951 + 113321931 113321971 41 CGTGGAGGAGAGCGACTTCGACACCATGCCAGACATTGAGA CGTGGAGGAGAGCGACTTTGACACCATGCCAGACATTGAGA < 41bp 0.79739769637581 0.560977394060596 0.6228326 0.47324455 prediction 0.472840604630429 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113321951 chr3:113321949 synonymous SNV . 0 19 hm1A_associated_SNPs_9136 0 0 0 5 113321925 113321949 mRNA hsa-miR-520c-3p SIDT1 miRanda miRanda
2192 chr3 113321949 113321949 1 + C T STAD 113321951 + 113321931 113321971 41 CGTGGAGGAGAGCGACTTCGACACCATGCCAGACATTGAGA CGTGGAGGAGAGCGACTTTGACACCATGCCAGACATTGAGA < 41bp 0.79739769637581 0.560977394060596 0.6228326 0.47324455 prediction 0.472840604630429 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113321951 chr3:113321949 synonymous SNV . 0 19 hm1A_associated_SNPs_9136 0 0 0 5 113321928 113321949 mRNA hsa-miR-520d-3p SIDT1 miRanda miRanda
2192 chr9 2647537 2647537 1 + C T READ 2647539 + 2647519 2647559 41 AGCAGGAATGAATGGATTCGATAGACGTCCACTGGTGACAG AGCAGGAATGAATGGATTTGATAGACGTCCACTGGTGACAG < 41bp 0.868856388464696 0.632546202227254 0.21065316 0.10479528 prediction 0.472620372474886 Functional Loss - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2647539 chr9:2647537 synonymous SNV . 0 19 hm1A_associated_SNPs_9158 0 0 0 1 2647537 2647556 mRNA hsa-miR-128 VLDLR miRanda miRanda
2192 chr10 75672025 75672025 1 + C T LIHC 75672027 + 75672007 75672047 41 GTCCAACAAGTACTTCTCCAACATTCACTGGTGCAACTGCC GTCCAACAAGTACTTCTCTAACATTCACTGGTGCAACTGCC < 41bp 0.736266587331406 0.472259159717542 0.18528897 0.17380789 prediction 0.472533174662813 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75672027 chr10:75672025 synonymous SNV . 0 19 hm1A_associated_SNPs_9163 0 0 0 2 75672024 75672046 mRNA hsa-miR-148a PLAU miRanda miRanda
2192 chr10 75672025 75672025 1 + C T LIHC 75672027 + 75672007 75672047 41 GTCCAACAAGTACTTCTCCAACATTCACTGGTGCAACTGCC GTCCAACAAGTACTTCTCTAACATTCACTGGTGCAACTGCC < 41bp 0.736266587331406 0.472259159717542 0.18528897 0.17380789 prediction 0.472533174662813 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75672027 chr10:75672025 synonymous SNV . 0 19 hm1A_associated_SNPs_9163 0 0 0 2 75672024 75672046 mRNA hsa-miR-148b PLAU miRanda miRanda
2192 chr6 24418376 24418376 1 + C T UCEC 24418378 + 24418358 24418398 41 CTGTTGGAAAACTACTACCGATTGGCTGACGATCTCTCCAA CTGTTGGAAAACTACTACTGATTGGCTGACGATCTCTCCAA < 41bp 0.842548881541143 0.606292592576401 0.5461906 0.24256688 prediction 0.472512577929485 Functional Loss - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24418378 chr6:24418376 stopgain 0.631 1 19 hm1A_associated_SNPs_9167 0 0 1 1 24418376 24418397 mRNA hsa-miR-185 MRS2 miRanda miRanda
2192 chr11 67174408 67174408 1 + C T OV 67174410 + 67174390 67174430 41 ACCCCTGCTGTACCTGCCCGAGTGGTTCCTGTGCCTCTTCG ACCCCTGCTGTACCTGCCTGAGTGGTTCCTGTGCCTCTTCG < 41bp 0.774949036505339 0.538730687453968 0.7611052 0.648929 prediction 0.472436698102743 Functional Loss - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67174410 chr11:67174408 synonymous SNV . 0 19 hm1A_associated_SNPs_9172 0 0 0 1 67174401 67174421 mRNA hsa-miR-873 TBC1D10C miRanda miRanda
2192 chr22 35719769 35719769 1 + C T SKCM 35719771 + 35719751 35719791 41 CTCCCACTAGACCGTGTTCAACTCAGAGACACAATCAGGAC CTCCCACTAGACCGTGTTTAACTCAGAGACACAATCAGGAC < 41bp 0.784500285787373 0.54830144766926 0.20367402 0.19656798 prediction 0.472397676236226 Functional Loss - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35719771 chr22:35719769 synonymous SNV 0.742 0 19 hm1A_associated_SNPs_9179 0 0 1 1 35719762 35719785 mRNA hsa-miR-599 TOM1 miRanda miRanda
2192 chrX 23414480 23414480 1 + C A rs751949923 23414482 + 23414462 23414502 41 GTTTGCATAATAGATCTTCGATCAATTCTCTCTCCAAGGGG GTTTGCATAATAGATCTTAGATCAATTCTCTCTCCAAGGGG < 41bp 0.736077038293405 0.446628137138029 0.35540542 0.15457222 prediction 0.472154076586811 Functional Loss - PTCHD1 ENSG00000165186 UTR3 Human protein_coding chrX:23414482 chrX:23414480 . . 0 19 hm1A_associated_SNPs_9198 0 0 0 1 23414476 23414497 mRNA hsa-miR-185 PTCHD1 miRanda miRanda
2192 chr11 118881534 118881534 1 + C T BLCA 118881536 + 118881516 118881556 41 AAAGGAGGATAAAGTGATCAAGGAGGTAAGTTAAAGTAGCA AAAGGAGGATAAAGTGATTAAGGAGGTAAGTTAAAGTAGCA < 41bp 0.735849277679047 0.499497184093641 0.22829327 0.19738737 prediction 0.471698555358094 Functional Loss - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118881536 chr11:118881534 synonymous SNV . 0 19 hm1A_associated_SNPs_9241 0 0 1 1 118881529 118881540 mRNA hsa-miR-22 CCDC84 miRanda miRanda
2192 chr6 126333971 126333971 1 + C T LUAD 126333973 + 126333953 126333993 41 GTTCACAGAAGGAGATACCAAAGGGGATAGAAAAATGGGAA GTTCACAGAAGGAGATACTAAAGGGGATAGAAAAATGGGAA < 41bp 0.735743371765978 0.494700268466062 0.11260527 0.10852283 prediction 0.471486743531955 Functional Loss - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126333973 chr6:126333971 nonsynonymous SNV 1.000 0 19 hm1A_associated_SNPs_9266 0 0 1 3 126333970 126333993 mRNA hsa-miR-204 TRMT11 miRanda miRanda
2192 chr6 126333971 126333971 1 + C T LUAD 126333973 + 126333953 126333993 41 GTTCACAGAAGGAGATACCAAAGGGGATAGAAAAATGGGAA GTTCACAGAAGGAGATACTAAAGGGGATAGAAAAATGGGAA < 41bp 0.735743371765978 0.494700268466062 0.11260527 0.10852283 prediction 0.471486743531955 Functional Loss - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126333973 chr6:126333971 nonsynonymous SNV 1.000 0 19 hm1A_associated_SNPs_9266 0 0 1 3 126333970 126333993 mRNA hsa-miR-211 TRMT11 miRanda miRanda
2192 chr6 126333971 126333971 1 + C T LUAD 126333973 + 126333953 126333993 41 GTTCACAGAAGGAGATACCAAAGGGGATAGAAAAATGGGAA GTTCACAGAAGGAGATACTAAAGGGGATAGAAAAATGGGAA < 41bp 0.735743371765978 0.494700268466062 0.11260527 0.10852283 prediction 0.471486743531955 Functional Loss - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126333973 chr6:126333971 nonsynonymous SNV 1.000 0 19 hm1A_associated_SNPs_9266 0 0 1 3 126333953 126333976 mRNA hsa-miR-9 TRMT11 miRanda miRanda
2192 chr1 231665032 231665032 1 + C T UCEC 231665034 + 231665014 231665054 41 CAGGAAAAGGAAGCATGACAATTTCCCACATAACCAAAGAA CAGGAAAAGGAAGCATGATAATTTCCCACATAACCAAAGAA < 41bp 0.735496225591447 0.459496760875598 0.085231155 0.079191655 prediction 0.470992451182894 Functional Loss - TSNAX ENSG00000116918;ENSG00000270106 CDS Human other chr1:231665034 chr1:231665032 synonymous SNV . 0 19 hm1A_associated_SNPs_9327 0 0 1 2 231665031 231665053 mRNA hsa-miR-9 TSNAX-DISC1 miRanda miRanda
2192 chr1 231665032 231665032 1 + C T UCEC 231665034 + 231665014 231665054 41 CAGGAAAAGGAAGCATGACAATTTCCCACATAACCAAAGAA CAGGAAAAGGAAGCATGATAATTTCCCACATAACCAAAGAA < 41bp 0.735496225591447 0.459496760875598 0.085231155 0.079191655 prediction 0.470992451182894 Functional Loss - TSNAX ENSG00000116918;ENSG00000270106 CDS Human other chr1:231665034 chr1:231665032 synonymous SNV . 0 19 hm1A_associated_SNPs_9327 0 0 1 2 231665022 231665045 mRNA hsa-miR-299-3p TSNAX-DISC1 miRanda miRanda
2192 chr9 2643437 2643437 1 + C T LGG 2643439 + 2643419 2643459 41 CACCAAGTGTCCAGCCAGCGAAATCCAGTGCGGCTCTGGCG CACCAAGTGTCCAGCCAGTGAAATCCAGTGCGGCTCTGGCG < 41bp 0.815017751757737 0.579926047906762 0.14091513 0.07943523 prediction 0.47018340770195 Functional Loss - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2643439 chr9:2643437 synonymous SNV . 0 19 hm1A_associated_SNPs_9403 0 0 0 1 2643423 2643445 mRNA hsa-miR-876-5p VLDLR miRanda miRanda
2192 chr9 127982956 127982956 1 + C T LUAD 127982958 + 127982938 127982978 41 CCCAGCCCGTGCAGGACACGAAGCTGCATGTGTTTGACGCA CCCAGCCCGTGCAGGACATGAAGCTGCATGTGTTTGACGCA < 41bp 0.860486151072161 0.625411076103482 0.54140097 0.46424195 prediction 0.470150149937357 Functional Loss - RABEPK ENSG00000136933 CDS Human protein_coding chr9:127982958 chr9:127982956 nonsynonymous SNV 0.807 0 19 hm1A_associated_SNPs_9409 0 0 0 1 127982955 127982976 mRNA hsa-miR-505 RABEPK miRanda miRanda
2192 chr4 115544702 115544702 1 + C T BLCA 115544704 + 115544684 115544724 41 AAGGATAATGCAGAAGTACAACCTGCTGCCAGAGAAGTCCA AAGGATAATGCAGAAGTATAACCTGCTGCCAGAGAAGTCCA < 41bp 0.73492101450513 0.459228382940132 0.071811676 0.06444028 prediction 0.469842029010261 Functional Loss - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115544704 chr4:115544702 synonymous SNV . 0 19 hm1A_associated_SNPs_9436 0 0 0 1 115544691 115544712 mRNA hsa-miR-214 UGT8 miRanda miRanda
2192 chr3 33425651 33425651 1 + C T UCEC 33425653 + 33425633 33425673 41 GGAGCGCCTCGAGCTGTACGACTGCCAGCAGGTTACCCGTG GGAGCGCCTCGAGCTGTATGACTGCCAGCAGGTTACCCGTG < 41bp 0.796264977051077 0.561809618248068 0.59726995 0.5283614 prediction 0.468910717606018 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33425653 chr3:33425651 synonymous SNV . 0 19 hm1A_associated_SNPs_9524 0 0 0 4 33425637 33425659 mRNA hsa-miR-34c-5p FBXL2 miRanda miRanda
2192 chr3 33425651 33425651 1 + C T UCEC 33425653 + 33425633 33425673 41 GGAGCGCCTCGAGCTGTACGACTGCCAGCAGGTTACCCGTG GGAGCGCCTCGAGCTGTATGACTGCCAGCAGGTTACCCGTG < 41bp 0.796264977051077 0.561809618248068 0.59726995 0.5283614 prediction 0.468910717606018 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33425653 chr3:33425651 synonymous SNV . 0 19 hm1A_associated_SNPs_9524 0 0 0 4 33425643 33425665 mRNA hsa-miR-370 FBXL2 miRanda miRanda
2192 chr3 33425651 33425651 1 + C T UCEC 33425653 + 33425633 33425673 41 GGAGCGCCTCGAGCTGTACGACTGCCAGCAGGTTACCCGTG GGAGCGCCTCGAGCTGTATGACTGCCAGCAGGTTACCCGTG < 41bp 0.796264977051077 0.561809618248068 0.59726995 0.5283614 prediction 0.468910717606018 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33425653 chr3:33425651 synonymous SNV . 0 19 hm1A_associated_SNPs_9524 0 0 0 4 33425637 33425659 mRNA hsa-miR-449a FBXL2 miRanda miRanda
2192 chr3 33425651 33425651 1 + C T UCEC 33425653 + 33425633 33425673 41 GGAGCGCCTCGAGCTGTACGACTGCCAGCAGGTTACCCGTG GGAGCGCCTCGAGCTGTATGACTGCCAGCAGGTTACCCGTG < 41bp 0.796264977051077 0.561809618248068 0.59726995 0.5283614 prediction 0.468910717606018 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33425653 chr3:33425651 synonymous SNV . 0 19 hm1A_associated_SNPs_9524 0 0 0 4 33425637 33425659 mRNA hsa-miR-449b FBXL2 miRanda miRanda
2192 chr19 35557161 35557161 1 + C T CESC 35557163 + 35557143 35557183 41 CTTTCCCCAGACTCACTCCGAAGCCAGCGGCATGGTGACCC CTTTCCCCAGACTCACTCTGAAGCCAGCGGCATGGTGACCC < 41bp 0.816740683184681 0.582632141679735 0.5311789 0.4165942 prediction 0.468217083009893 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35557163 chr19:35557161 synonymous SNV . 0 19 hm1A_associated_SNPs_9593 0 0 1 1 35557151 35557175 mRNA hsa-miR-874 HPN miRanda miRanda
2192 chr10 115661491 115661491 1 + C T COAD 115661493 + 115661473 115661513 41 AGAGAATCGAAACAATGCCTATCCTCACAAGGCAGGTTTTG AGAGAATCGAAACAATGCTTATCCTCACAAGGCAGGTTTTG < 41bp 0.734059201212798 0.449769745300009 0.34394643 0.21869317 prediction 0.468118402425595 Functional Loss - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115661493 chr10:115661491 synonymous SNV . 0 19 hm1A_associated_SNPs_9604 0 0 1 2 115661478 115661499 mRNA hsa-let-7e NHLRC2 miRanda miRanda
2192 chr10 115661491 115661491 1 + C T COAD 115661493 + 115661473 115661513 41 AGAGAATCGAAACAATGCCTATCCTCACAAGGCAGGTTTTG AGAGAATCGAAACAATGCTTATCCTCACAAGGCAGGTTTTG < 41bp 0.734059201212798 0.449769745300009 0.34394643 0.21869317 prediction 0.468118402425595 Functional Loss - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115661493 chr10:115661491 synonymous SNV . 0 19 hm1A_associated_SNPs_9604 0 0 1 2 115661478 115661499 mRNA hsa-miR-98 NHLRC2 miRanda miRanda
2192 chr11 12278511 12278511 1 + C T UCEC 12278513 + 12278493 12278533 41 CGCCTACACCTTTGACTGCGATGAAGGTAACCCCAGGGGCC CGCCTACACCTTTGACTGTGATGAAGGTAACCCCAGGGGCC < 41bp 0.787957438947767 0.55395728779732 0.37473 0.16704345 prediction 0.468000302300893 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12278513 chr11:12278511 synonymous SNV . 0 19 hm1A_associated_SNPs_9618 0 0 1 1 12278498 12278518 mRNA hsa-miR-205 MICAL2 miRanda miRanda
2192 chr4 26432539 26432539 1 + C T UCEC 26432541 + 26432521 26432561 41 AAGCCAGGTGCCCCCTAACGAATCAAACACAAACAGCGAGG AAGCCAGGTGCCCCCTAATGAATCAAACACAAACAGCGAGG < 41bp 0.733920899293267 0.430998126679583 0.22939602 0.120903045 prediction 0.467841798586534 Functional Loss - RBPJ ENSG00000168214 CDS Human protein_coding chr4:26432541 chr4:26432539 synonymous SNV . 0 19 hm1A_associated_SNPs_9633 0 0 1 1 26432525 26432547 mRNA hsa-miR-375 RBPJ miRanda miRanda
2192 chr19 49651448 49651448 1 + C A PAAD 49651450 + 49651430 49651470 41 GAGTCGCTGGTGGACGCTCGAATGTTAGATCACCTTAACAA GAGTCGCTGGTGGACGCTAGAATGTTAGATCACCTTAACAA < 41bp 0.773813520063849 0.539912979893953 0.8015641 0.6080943 prediction 0.467801080339792 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49651450 chr19:49651448 synonymous SNV . 0 19 hm1A_associated_SNPs_9641 0 0 0 2 49651431 49651455 mRNA hsa-miR-181b PPFIA3 miRanda miRanda
2192 chr19 49651448 49651448 1 + C A PAAD 49651450 + 49651430 49651470 41 GAGTCGCTGGTGGACGCTCGAATGTTAGATCACCTTAACAA GAGTCGCTGGTGGACGCTAGAATGTTAGATCACCTTAACAA < 41bp 0.773813520063849 0.539912979893953 0.8015641 0.6080943 prediction 0.467801080339792 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49651450 chr19:49651448 synonymous SNV . 0 19 hm1A_associated_SNPs_9641 0 0 0 2 49651431 49651455 mRNA hsa-miR-181d PPFIA3 miRanda miRanda
2192 chr17 37809961 37809961 1 + C T LUAD 37809963 + 37809943 37809983 41 CTGTCTCTTCGTCACCTTCGACCTGCTCTTCATCTCCCTGC CTGTCTCTTCGTCACCTTTGACCTGCTCTTCATCTCCCTGC < 41bp 0.765505850529384 0.531900684390472 0.64324105 0.43074977 prediction 0.467210332277825 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37809963 chr17:37809961 synonymous SNV . 0 19 hm1A_associated_SNPs_9708 0 0 1 2 37809959 37809979 mRNA hsa-miR-143 STARD3 miRanda miRanda
2192 chr17 37809961 37809961 1 + C T LUAD 37809963 + 37809943 37809983 41 CTGTCTCTTCGTCACCTTCGACCTGCTCTTCATCTCCCTGC CTGTCTCTTCGTCACCTTTGACCTGCTCTTCATCTCCCTGC < 41bp 0.765505850529384 0.531900684390472 0.64324105 0.43074977 prediction 0.467210332277825 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37809963 chr17:37809961 synonymous SNV . 0 19 hm1A_associated_SNPs_9708 0 0 1 2 37809958 37809980 mRNA hsa-miR-185 STARD3 miRanda miRanda
2192 chrX 53114217 53114217 1 + C T COAD 53114219 + 53114199 53114239 41 GTCACGGGAACCAGGATGCGAGCCACAGCTTTTTCAGCTGG GTCACGGGAACCAGGATGTGAGCCACAGCTTTTTCAGCTGG < 41bp 0.808255933037265 0.574708729719886 0.60428584 0.32033607 prediction 0.467094406634758 Functional Loss - TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53114219 chrX:53114217 nonsynonymous SNV 0.022 0 19 hm1A_associated_SNPs_9721 0 0 1 4 53114209 53114231 mRNA hsa-miR-320a TSPYL2 miRanda miRanda
2192 chrX 53114217 53114217 1 + C T COAD 53114219 + 53114199 53114239 41 GTCACGGGAACCAGGATGCGAGCCACAGCTTTTTCAGCTGG GTCACGGGAACCAGGATGTGAGCCACAGCTTTTTCAGCTGG < 41bp 0.808255933037265 0.574708729719886 0.60428584 0.32033607 prediction 0.467094406634758 Functional Loss - TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53114219 chrX:53114217 nonsynonymous SNV 0.022 0 19 hm1A_associated_SNPs_9721 0 0 1 4 53114209 53114231 mRNA hsa-miR-320b TSPYL2 miRanda miRanda
2192 chrX 53114217 53114217 1 + C T COAD 53114219 + 53114199 53114239 41 GTCACGGGAACCAGGATGCGAGCCACAGCTTTTTCAGCTGG GTCACGGGAACCAGGATGTGAGCCACAGCTTTTTCAGCTGG < 41bp 0.808255933037265 0.574708729719886 0.60428584 0.32033607 prediction 0.467094406634758 Functional Loss - TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53114219 chrX:53114217 nonsynonymous SNV 0.022 0 19 hm1A_associated_SNPs_9721 0 0 1 4 53114211 53114231 mRNA hsa-miR-320c TSPYL2 miRanda miRanda
2192 chrX 53114217 53114217 1 + C T COAD 53114219 + 53114199 53114239 41 GTCACGGGAACCAGGATGCGAGCCACAGCTTTTTCAGCTGG GTCACGGGAACCAGGATGTGAGCCACAGCTTTTTCAGCTGG < 41bp 0.808255933037265 0.574708729719886 0.60428584 0.32033607 prediction 0.467094406634758 Functional Loss - TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53114219 chrX:53114217 nonsynonymous SNV 0.022 0 19 hm1A_associated_SNPs_9721 0 0 1 4 53114212 53114231 mRNA hsa-miR-320d TSPYL2 miRanda miRanda
2192 chr6 3137651 3137651 1 + C T SKCM 3137653 + 3137633 3137673 41 AAAGCCTCTAGAAGCCCTCTATGGGTATGACTACTTTGCCA AAAGCCTCTAGAAGCCCTTTATGGGTATGACTACTTTGCCA < 41bp 0.836899997951763 0.603418800096559 0.13753808 0.11763775 prediction 0.466962395710407 Functional Loss - BPHL ENSG00000137274 CDS Human protein_coding chr6:3137653 chr6:3137651 synonymous SNV . 0 19 hm1A_associated_SNPs_9738 0 0 1 1 3137651 3137656 mRNA hsa-miR-125a-3p BPHL miRanda miRanda
2192 chrX 53115251 53115251 1 + C T UCEC 53115253 + 53115233 53115273 41 CAACAACCAGGACAGCAGCGACAGTGACAATGAAGCAGATG CAACAACCAGGACAGCAGTGACAGTGACAATGAAGCAGATG < 41bp 0.786160956965061 0.552705573367992 0.37320423 0.2950567 prediction 0.466910767194137 Functional Loss - TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53115253 chrX:53115251 synonymous SNV . 0 19 hm1A_associated_SNPs_9743 0 0 1 4 53115243 53115264 mRNA hsa-miR-25 TSPYL2 miRanda miRanda
2192 chrX 53115251 53115251 1 + C T UCEC 53115253 + 53115233 53115273 41 CAACAACCAGGACAGCAGCGACAGTGACAATGAAGCAGATG CAACAACCAGGACAGCAGTGACAGTGACAATGAAGCAGATG < 41bp 0.786160956965061 0.552705573367992 0.37320423 0.2950567 prediction 0.466910767194137 Functional Loss - TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53115253 chrX:53115251 synonymous SNV . 0 19 hm1A_associated_SNPs_9743 0 0 1 4 53115243 53115264 mRNA hsa-miR-92a TSPYL2 miRanda miRanda
2192 chrX 53115251 53115251 1 + C T UCEC 53115253 + 53115233 53115273 41 CAACAACCAGGACAGCAGCGACAGTGACAATGAAGCAGATG CAACAACCAGGACAGCAGTGACAGTGACAATGAAGCAGATG < 41bp 0.786160956965061 0.552705573367992 0.37320423 0.2950567 prediction 0.466910767194137 Functional Loss - TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53115253 chrX:53115251 synonymous SNV . 0 19 hm1A_associated_SNPs_9743 0 0 1 4 53115242 53115264 mRNA hsa-miR-367 TSPYL2 miRanda miRanda
2192 chrX 53115251 53115251 1 + C T UCEC 53115253 + 53115233 53115273 41 CAACAACCAGGACAGCAGCGACAGTGACAATGAAGCAGATG CAACAACCAGGACAGCAGTGACAGTGACAATGAAGCAGATG < 41bp 0.786160956965061 0.552705573367992 0.37320423 0.2950567 prediction 0.466910767194137 Functional Loss - TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53115253 chrX:53115251 synonymous SNV . 0 19 hm1A_associated_SNPs_9743 0 0 1 4 53115243 53115264 mRNA hsa-miR-92b TSPYL2 miRanda miRanda
2192 chr6 109616819 109616819 1 + C T UCEC 109616821 + 109616801 109616841 41 CAGTTTTGCTAAGCTTGGCAATTGTCCAGCATGTTTTGAAT CAGTTTTGCTAAGCTTGGTAATTGTCCAGCATGTTTTGAAT < 41bp 0.8105321592602 0.577135113556238 0.041504204 0.057192504 prediction 0.466794091407925 Functional Loss - CCDC162P ENSG00000203799 ncRNA_exonic Human transcribed_unitary_pseudogene chr6:109616821 chr6:109616819 . . 0 19 hm1A_associated_SNPs_9755 0 0 1 2 109616810 109616830 mRNA hsa-miR-378 CCDC162 miRanda miRanda
2192 chr6 109616819 109616819 1 + C T UCEC 109616821 + 109616801 109616841 41 CAGTTTTGCTAAGCTTGGCAATTGTCCAGCATGTTTTGAAT CAGTTTTGCTAAGCTTGGTAATTGTCCAGCATGTTTTGAAT < 41bp 0.8105321592602 0.577135113556238 0.041504204 0.057192504 prediction 0.466794091407925 Functional Loss - CCDC162P ENSG00000203799 ncRNA_exonic Human transcribed_unitary_pseudogene chr6:109616821 chr6:109616819 . . 0 19 hm1A_associated_SNPs_9755 0 0 1 2 109616809 109616830 mRNA hsa-miR-422a CCDC162 miRanda miRanda
2192 chr20 60749691 60749691 1 + C T OV 60749693 + 60749673 60749713 41 GCAGCAGCGGCCCTACGGCTATGAACAGGCAAGCTTTCTGG GCAGCAGCGGCCCTACGGTTATGAACAGGCAAGCTTTCTGG < 41bp 0.799087768483818 0.565949468476805 0.20826009 0.17719993 prediction 0.466276600014027 Functional Loss - SS18L1 ENSG00000184402 CDS Human protein_coding chr20:60749693 chr20:60749691 synonymous SNV . 0 19 hm1A_associated_SNPs_9788 0 0 1 3 60749684 60749700 mRNA hsa-miR-193a-3p SS18L1 miRanda miRanda
2192 chr20 60749691 60749691 1 + C T OV 60749693 + 60749673 60749713 41 GCAGCAGCGGCCCTACGGCTATGAACAGGCAAGCTTTCTGG GCAGCAGCGGCCCTACGGTTATGAACAGGCAAGCTTTCTGG < 41bp 0.799087768483818 0.565949468476805 0.20826009 0.17719993 prediction 0.466276600014027 Functional Loss - SS18L1 ENSG00000184402 CDS Human protein_coding chr20:60749693 chr20:60749691 synonymous SNV . 0 19 hm1A_associated_SNPs_9788 0 0 1 3 60749683 60749700 mRNA hsa-miR-328 SS18L1 miRanda miRanda
2192 chr20 60749691 60749691 1 + C T OV 60749693 + 60749673 60749713 41 GCAGCAGCGGCCCTACGGCTATGAACAGGCAAGCTTTCTGG GCAGCAGCGGCCCTACGGTTATGAACAGGCAAGCTTTCTGG < 41bp 0.799087768483818 0.565949468476805 0.20826009 0.17719993 prediction 0.466276600014027 Functional Loss - SS18L1 ENSG00000184402 CDS Human protein_coding chr20:60749693 chr20:60749691 synonymous SNV . 0 19 hm1A_associated_SNPs_9788 0 0 1 3 60749684 60749700 mRNA hsa-miR-193b SS18L1 miRanda miRanda
2192 chr3 113619972 113619972 1 + C T LUSC 113619974 + 113619954 113619994 41 TGGAAAACTTGTCACTGTCGATTGAGGATGTGCAGCCAAGG TGGAAAACTTGTCACTGTTGATTGAGGATGTGCAGCCAAGG < 41bp 0.782061851892036 0.549009542482077 0.21904057 0.110567 prediction 0.466104618819918 Functional Loss - GRAMD1C ENSG00000178075 CDS Human protein_coding chr3:113619974 chr3:113619972 nonsynonymous SNV 0.723 0 19 hm1A_associated_SNPs_9806 0 0 0 2 113619955 113619975 mRNA hsa-miR-27a GRAMD1C miRanda miRanda
2192 chr3 113619972 113619972 1 + C T LUSC 113619974 + 113619954 113619994 41 TGGAAAACTTGTCACTGTCGATTGAGGATGTGCAGCCAAGG TGGAAAACTTGTCACTGTTGATTGAGGATGTGCAGCCAAGG < 41bp 0.782061851892036 0.549009542482077 0.21904057 0.110567 prediction 0.466104618819918 Functional Loss - GRAMD1C ENSG00000178075 CDS Human protein_coding chr3:113619974 chr3:113619972 nonsynonymous SNV 0.723 0 19 hm1A_associated_SNPs_9806 0 0 0 2 113619955 113619975 mRNA hsa-miR-27b GRAMD1C miRanda miRanda
2192 chr5 40959677 40959677 1 + C T LGG 40959679 + 40959659 40959699 41 GATCCTGCGTTGGAGAAACGACAGAAAGCACACAATGCGAA GATCCTGCGTTGGAGAAATGACAGAAAGCACACAATGCGAA < 41bp 0.732250883762624 0.489778052970847 0.44877532 0.31931856 prediction 0.464501767525247 Functional Loss - C7 ENSG00000112936 CDS Human protein_coding chr5:40959679 chr5:40959677 nonsynonymous SNV 0.120 2 19 hm1A_associated_SNPs_9948 0 0 0 1 40959673 40959691 mRNA hsa-miR-218 C7 miRanda miRanda
2192 chr9 1056689 1056689 1 + C G KIRC 1056691 + 1056671 1056711 41 AATGCCACCACCTCAGTTCAAGCCCTGAAGCCTGGGGCCAG AATGCCACCACCTCAGTTGAAGCCCTGAAGCCTGGGGCCAG < 41bp 0.764675693678187 0.532541757828517 0.7081265 0.32740152 prediction 0.464267871699341 Functional Loss - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056691 chr9:1056689 nonsynonymous SNV 0.988 2 19 hm1A_associated_SNPs_9965 0 0 0 1 1056675 1056697 mRNA hsa-miR-296-3p DMRT2 miRanda miRanda
2192 chr16 57710229 57710229 1 + T C rs56888556 57710228 + 57710208 57710248 41 CAACACTGCAGAAGACTTCTATTTCTCTCTGGAGCCCTCTC CAACACTGCAGAAGACTTCTACTTCTCTCTGGAGCCCTCTC < 41bp 0.732100578738059 0.495829352345327 0.24283072 0.2250224 prediction 0.464201157476117 Functional Loss - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57710228 chr16:57710229 synonymous SNV . 0 22 hm1A_associated_SNPs_9971 0 0 0 1 57710208 57710235 mRNA hsa-miR-539 GPR97 miRanda miRanda
2192 chr10 114925435 114925435 1 + C T UCEC 114925437 + 114925417 114925457 41 CTGCTAGGCTCCCCTCCCCGAGACGCCAAGTCACAGACTGA CTGCTAGGCTCCCCTCCCTGAGACGCCAAGTCACAGACTGA < 41bp 0.740476735111832 0.508408557851454 0.5932047 0.49827448 prediction 0.464136354520756 Functional Loss - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114925437 chr10:114925435 stopgain 0.998 0 19 hm1A_associated_SNPs_9978 0 0 1 2 114925432 114925453 mRNA hsa-miR-378 TCF7L2 miRanda miRanda
2192 chr10 114925435 114925435 1 + C T UCEC 114925437 + 114925417 114925457 41 CTGCTAGGCTCCCCTCCCCGAGACGCCAAGTCACAGACTGA CTGCTAGGCTCCCCTCCCTGAGACGCCAAGTCACAGACTGA < 41bp 0.740476735111832 0.508408557851454 0.5932047 0.49827448 prediction 0.464136354520756 Functional Loss - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114925437 chr10:114925435 stopgain 0.998 0 19 hm1A_associated_SNPs_9978 0 0 1 2 114925431 114925453 mRNA hsa-miR-422a TCF7L2 miRanda miRanda
2192 chr5 68728824 68728824 1 + C T rs61736168 68728826 + 68728806 68728846 41 AGACCAGTTTTCAGAGTACAAAGAGCTGTCTGCAGAAGTTC AGACCAGTTTTCAGAGTATAAAGAGCTGTCTGCAGAAGTTC < 41bp 0.84008418925802 0.608144691548432 0.16934818 0.12725627 prediction 0.463878995419175 Functional Loss - MARVELD2 ENSG00000152939 CDS Human protein_coding chr5:68728826 chr5:68728824 synonymous SNV . 0 19 hm1A_associated_SNPs_9997 2 0 1 1 68728822 68728843 mRNA hsa-miR-544 MARVELD2 miRanda miRanda
2192 chr11 47183130 47183130 1 + C T UCEC 47183132 + 47183112 47183152 41 AGACCTCTCCATCATTCCCGAAAAGTGGATGGAGAGAGTGA AGACCTCTCCATCATTCCTGAAAAGTGGATGGAGAGAGTGA < 41bp 0.731898205560889 0.4416611366455 0.54006493 0.31066668 prediction 0.463796411121777 Functional Loss - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47183132 chr11:47183130 stopgain 0.996 1 19 hm1A_associated_SNPs_10000 0 0 1 1 47183108 47183130 mRNA hsa-miR-1 C11orf49 miRanda miRanda
2192 chr4 57366764 57366764 1 + C T CESC 57366766 + 57366746 57366786 41 GAAAGATGGCTGCCAATGCGAGAACGTTCTTACTACCGGGG GAAAGATGGCTGCCAATGTGAGAACGTTCTTACTACCGGGG < 41bp 0.731895672205402 0.460910077526533 0.43654865 0.3390875 prediction 0.463791344410805 Functional Loss - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57366766 chr4:57366764 stopgain 1.000 1 19 hm1A_associated_SNPs_10001 0 0 1 1 57366748 57366770 mRNA hsa-miR-544 SRP72 miRanda miRanda
2192 chr17 30551678 30551678 1 + C T UCEC 30551680 + 30551660 30551700 41 AGCTCCACGTTTTGGCTTCGAGCAAGTTTTGGTGCTACTGT AGCTCCACGTTTTGGCTTTGAGCAAGTTTTGGTGCTACTGT < 41bp 0.731889225003457 0.476189486850246 0.18178502 0.11845195 prediction 0.463778450006915 Functional Loss - RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30551680 chr17:30551678 stopgain 1.000 1 19 hm1A_associated_SNPs_10004 0 0 0 3 30551675 30551696 mRNA hsa-miR-29a RHOT1 miRanda miRanda
2192 chr17 30551678 30551678 1 + C T UCEC 30551680 + 30551660 30551700 41 AGCTCCACGTTTTGGCTTCGAGCAAGTTTTGGTGCTACTGT AGCTCCACGTTTTGGCTTTGAGCAAGTTTTGGTGCTACTGT < 41bp 0.731889225003457 0.476189486850246 0.18178502 0.11845195 prediction 0.463778450006915 Functional Loss - RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30551680 chr17:30551678 stopgain 1.000 1 19 hm1A_associated_SNPs_10004 0 0 0 3 30551674 30551696 mRNA hsa-miR-29b RHOT1 miRanda miRanda
2192 chr17 30551678 30551678 1 + C T UCEC 30551680 + 30551660 30551700 41 AGCTCCACGTTTTGGCTTCGAGCAAGTTTTGGTGCTACTGT AGCTCCACGTTTTGGCTTTGAGCAAGTTTTGGTGCTACTGT < 41bp 0.731889225003457 0.476189486850246 0.18178502 0.11845195 prediction 0.463778450006915 Functional Loss - RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30551680 chr17:30551678 stopgain 1.000 1 19 hm1A_associated_SNPs_10004 0 0 0 3 30551675 30551696 mRNA hsa-miR-29c RHOT1 miRanda miRanda
2192 chr3 138179482 138179482 1 + C T SKCM 138179484 + 138179464 138179504 41 CAACTGGACTGGCCTGACCAACCTGCTGGATGCGCCGGGAA CAACTGGACTGGCCTGACTAACCTGCTGGATGCGCCGGGAA < 41bp 0.760789544065987 0.528925869455155 0.39474794 0.38665664 prediction 0.463727349221663 Functional Loss - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138179484 chr3:138179482 synonymous SNV . 0 19 hm1A_associated_SNPs_10007 0 0 1 1 138179472 138179492 mRNA hsa-miR-214 ESYT3 miRanda miRanda
2192 chr10 102744376 102744376 1 + T C rs11190780 102744375 + 102744355 102744395 41 GCGTACATTCACATGCACACATGGAAGAATGTTTATCGGCT GCGTACATTCACATGCACACACGGAAGAATGTTTATCGGCT < 41bp 0.731745777181686 0.480763979655741 0.11321226 0.15370968 prediction 0.463491554363373 Functional Loss - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102744375 chr10:102744376 nonsynonymous SNV 0.977 1 22 hm1A_associated_SNPs_10039 0 0 1 1 102744366 102744388 mRNA hsa-miR-543 SEMA4G miRanda miRanda
2192 chr2 203168173 203168173 1 + C A rs1054446 203168175 + 203168155 203168195 41 ATTAACAGAAAGGAATTACGATTATATCACCCGGACACACA ATTAACAGAAAGGAATTAAGATTATATCACCCGGACACACA < 41bp 0.837132996904299 0.605413468156537 0.60493726 0.28039807 prediction 0.463439057495525 Functional Loss - NOP58 ENSG00000055044 UTR3 Human protein_coding chr2:203168175 chr2:203168173 . . 0 19 hm1A_associated_SNPs_10045 0 0 1 1 203168160 203168177 mRNA hsa-miR-487b NOP58 miRanda miRanda
2192 chr12 56334172 56334172 1 + C T BLCA 56334174 + 56334154 56334194 41 TCAGAAAAAGATCCGGATCTACCACAGTCTGACCGGGCTGC TCAGAAAAAGATCCGGATTTACCACAGTCTGACCGGGCTGC < 41bp 0.744600968164878 0.513148497248939 0.47209847 0.33593464 prediction 0.462904941831879 Functional Loss - DGKA ENSG00000065357 CDS Human protein_coding chr12:56334174 chr12:56334172 nonsynonymous SNV . 0 19 hm1A_associated_SNPs_10088 0 0 0 1 56334167 56334188 mRNA hsa-miR-379 DGKA miRanda miRanda
2192 chr3 23996151 23996151 1 + C T SKCM 23996153 + 23996133 23996173 41 CATCTTCTCCAAATAGCTCTAATTCTGATACCAATGGTAAT CATCTTCTCCAAATAGCTTTAATTCTGATACCAATGGTAAT < 41bp 0.730762226356662 0.461848282418374 0.10899088 0.08684453 prediction 0.461524452713323 Functional Loss - NR1D2 ENSG00000174738 CDS Human protein_coding chr3:23996153 chr3:23996151 nonsynonymous SNV 0.970 2 19 hm1A_associated_SNPs_10218 0 0 1 1 23996145 23996163 mRNA hsa-miR-361-5p NR1D2 miRanda miRanda
2192 chr16 66514622 66514622 1 + C T UCEC 66514624 + 66514604 66514644 41 AGCGGCCACAGCCCTGGCCGACACCAGCAGGAGCAGAGGAC AGCGGCCACAGCCCTGGCTGACACCAGCAGGAGCAGAGGAC < 41bp 0.765973342380838 0.535448122308578 0.6796566 0.41446126 prediction 0.46105044014452 Functional Loss - BEAN1 ENSG00000166546 CDS Human protein_coding chr16:66514624 chr16:66514622 stopgain 0.001 0 19 hm1A_associated_SNPs_10267 0 0 0 1 66514613 66514632 mRNA hsa-miR-138 BEAN miRanda miRanda
2192 chr1 166961969 166961969 1 + C T UCEC 166961971 + 166961951 166961991 41 GAACATTTTTAGCCATGGCGAGCTACCTCCTCATTGTGAAC GAACATTTTTAGCCATGGTGAGCTACCTCCTCATTGTGAAC < 41bp 0.801829967948364 0.571377651058146 0.14411938 0.13696519 prediction 0.460904633780436 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166961971 chr1:166961969 synonymous SNV . 0 19 hm1A_associated_SNPs_10279 0 0 0 10 166961959 166961980 mRNA hsa-let-7a MAEL miRanda miRanda
2192 chr1 166961969 166961969 1 + C T UCEC 166961971 + 166961951 166961991 41 GAACATTTTTAGCCATGGCGAGCTACCTCCTCATTGTGAAC GAACATTTTTAGCCATGGTGAGCTACCTCCTCATTGTGAAC < 41bp 0.801829967948364 0.571377651058146 0.14411938 0.13696519 prediction 0.460904633780436 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166961971 chr1:166961969 synonymous SNV . 0 19 hm1A_associated_SNPs_10279 0 0 0 10 166961959 166961980 mRNA hsa-let-7b MAEL miRanda miRanda
2192 chr1 166961969 166961969 1 + C T UCEC 166961971 + 166961951 166961991 41 GAACATTTTTAGCCATGGCGAGCTACCTCCTCATTGTGAAC GAACATTTTTAGCCATGGTGAGCTACCTCCTCATTGTGAAC < 41bp 0.801829967948364 0.571377651058146 0.14411938 0.13696519 prediction 0.460904633780436 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166961971 chr1:166961969 synonymous SNV . 0 19 hm1A_associated_SNPs_10279 0 0 0 10 166961961 166961980 mRNA hsa-let-7c MAEL miRanda miRanda
2192 chr1 166961969 166961969 1 + C T UCEC 166961971 + 166961951 166961991 41 GAACATTTTTAGCCATGGCGAGCTACCTCCTCATTGTGAAC GAACATTTTTAGCCATGGTGAGCTACCTCCTCATTGTGAAC < 41bp 0.801829967948364 0.571377651058146 0.14411938 0.13696519 prediction 0.460904633780436 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166961971 chr1:166961969 synonymous SNV . 0 19 hm1A_associated_SNPs_10279 0 0 0 10 166961961 166961980 mRNA hsa-let-7d MAEL miRanda miRanda
2192 chr1 166961969 166961969 1 + C T UCEC 166961971 + 166961951 166961991 41 GAACATTTTTAGCCATGGCGAGCTACCTCCTCATTGTGAAC GAACATTTTTAGCCATGGTGAGCTACCTCCTCATTGTGAAC < 41bp 0.801829967948364 0.571377651058146 0.14411938 0.13696519 prediction 0.460904633780436 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166961971 chr1:166961969 synonymous SNV . 0 19 hm1A_associated_SNPs_10279 0 0 0 10 166961959 166961980 mRNA hsa-let-7e MAEL miRanda miRanda
2192 chr1 166961969 166961969 1 + C T UCEC 166961971 + 166961951 166961991 41 GAACATTTTTAGCCATGGCGAGCTACCTCCTCATTGTGAAC GAACATTTTTAGCCATGGTGAGCTACCTCCTCATTGTGAAC < 41bp 0.801829967948364 0.571377651058146 0.14411938 0.13696519 prediction 0.460904633780436 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166961971 chr1:166961969 synonymous SNV . 0 19 hm1A_associated_SNPs_10279 0 0 0 10 166961957 166961980 mRNA hsa-let-7f MAEL miRanda miRanda
2192 chr1 166961969 166961969 1 + C T UCEC 166961971 + 166961951 166961991 41 GAACATTTTTAGCCATGGCGAGCTACCTCCTCATTGTGAAC GAACATTTTTAGCCATGGTGAGCTACCTCCTCATTGTGAAC < 41bp 0.801829967948364 0.571377651058146 0.14411938 0.13696519 prediction 0.460904633780436 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166961971 chr1:166961969 synonymous SNV . 0 19 hm1A_associated_SNPs_10279 0 0 0 10 166961951 166961975 mRNA hsa-miR-22 MAEL miRanda miRanda
2192 chr1 166961969 166961969 1 + C T UCEC 166961971 + 166961951 166961991 41 GAACATTTTTAGCCATGGCGAGCTACCTCCTCATTGTGAAC GAACATTTTTAGCCATGGTGAGCTACCTCCTCATTGTGAAC < 41bp 0.801829967948364 0.571377651058146 0.14411938 0.13696519 prediction 0.460904633780436 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166961971 chr1:166961969 synonymous SNV . 0 19 hm1A_associated_SNPs_10279 0 0 0 10 166961959 166961980 mRNA hsa-miR-98 MAEL miRanda miRanda
2192 chr1 166961969 166961969 1 + C T UCEC 166961971 + 166961951 166961991 41 GAACATTTTTAGCCATGGCGAGCTACCTCCTCATTGTGAAC GAACATTTTTAGCCATGGTGAGCTACCTCCTCATTGTGAAC < 41bp 0.801829967948364 0.571377651058146 0.14411938 0.13696519 prediction 0.460904633780436 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166961971 chr1:166961969 synonymous SNV . 0 19 hm1A_associated_SNPs_10279 0 0 0 10 166961959 166961980 mRNA hsa-let-7g MAEL miRanda miRanda
2192 chr1 166961969 166961969 1 + C T UCEC 166961971 + 166961951 166961991 41 GAACATTTTTAGCCATGGCGAGCTACCTCCTCATTGTGAAC GAACATTTTTAGCCATGGTGAGCTACCTCCTCATTGTGAAC < 41bp 0.801829967948364 0.571377651058146 0.14411938 0.13696519 prediction 0.460904633780436 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166961971 chr1:166961969 synonymous SNV . 0 19 hm1A_associated_SNPs_10279 0 0 0 10 166961958 166961980 mRNA hsa-let-7i MAEL miRanda miRanda
2192 chr8 80553702 80553702 1 + C T UCEC 80553704 + 80553684 80553724 41 CCTATCTCAGAAGCCCCACGAACTTTAGCTTCTCCAAAGAA CCTATCTCAGAAGCCCCATGAACTTTAGCTTCTCCAAAGAA < 41bp 0.823312927546928 0.592902671114335 0.1852172 0.18947116 prediction 0.460820512865187 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80553704 chr8:80553702 stopgain 1.000 1 19 hm1A_associated_SNPs_10289 0 0 0 4 80553701 80553723 mRNA hsa-miR-9 STMN2 miRanda miRanda
2192 chr8 80553702 80553702 1 + C T UCEC 80553704 + 80553684 80553724 41 CCTATCTCAGAAGCCCCACGAACTTTAGCTTCTCCAAAGAA CCTATCTCAGAAGCCCCATGAACTTTAGCTTCTCCAAAGAA < 41bp 0.823312927546928 0.592902671114335 0.1852172 0.18947116 prediction 0.460820512865187 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80553704 chr8:80553702 stopgain 1.000 1 19 hm1A_associated_SNPs_10289 0 0 0 4 80553696 80553718 mRNA hsa-miR-146a STMN2 miRanda miRanda
2192 chr8 80553702 80553702 1 + C T UCEC 80553704 + 80553684 80553724 41 CCTATCTCAGAAGCCCCACGAACTTTAGCTTCTCCAAAGAA CCTATCTCAGAAGCCCCATGAACTTTAGCTTCTCCAAAGAA < 41bp 0.823312927546928 0.592902671114335 0.1852172 0.18947116 prediction 0.460820512865187 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80553704 chr8:80553702 stopgain 1.000 1 19 hm1A_associated_SNPs_10289 0 0 0 4 80553682 80553703 mRNA hsa-miR-491-5p STMN2 miRanda miRanda
2192 chr8 80553702 80553702 1 + C T UCEC 80553704 + 80553684 80553724 41 CCTATCTCAGAAGCCCCACGAACTTTAGCTTCTCCAAAGAA CCTATCTCAGAAGCCCCATGAACTTTAGCTTCTCCAAAGAA < 41bp 0.823312927546928 0.592902671114335 0.1852172 0.18947116 prediction 0.460820512865187 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80553704 chr8:80553702 stopgain 1.000 1 19 hm1A_associated_SNPs_10289 0 0 0 4 80553696 80553718 mRNA hsa-miR-146b-5p STMN2 miRanda miRanda
2192 chr6 44114611 44114611 1 + C T rs142029936 44114613 + 44114593 44114633 41 CCCCAACTGCACAGTTCTCGAAGCCCGCCCGTGTTACAACG CCCCAACTGCACAGTTCTTGAAGCCCGCCCGTGTTACAACG < 41bp 0.730113586811266 0.441003572344587 0.40717152 0.19467911 prediction 0.460227173622533 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44114613 chr6:44114611 synonymous SNV . 0 19 hm1A_associated_SNPs_10358 0 0 1 2 44114592 44114612 mRNA hsa-miR-146a TMEM63B miRanda miRanda
2192 chr6 44114611 44114611 1 + C T rs142029936 44114613 + 44114593 44114633 41 CCCCAACTGCACAGTTCTCGAAGCCCGCCCGTGTTACAACG CCCCAACTGCACAGTTCTTGAAGCCCGCCCGTGTTACAACG < 41bp 0.730113586811266 0.441003572344587 0.40717152 0.19467911 prediction 0.460227173622533 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44114613 chr6:44114611 synonymous SNV . 0 19 hm1A_associated_SNPs_10358 0 0 1 2 44114591 44114612 mRNA hsa-miR-146b-5p TMEM63B miRanda miRanda
2192 chr7 65157788 65157788 1 + C T LUAD 65157790 + 65157770 65157810 41 AGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGT AGGCACTATGCCTACCTCTGAGACAGTCTTTCTCATCTTGT < 41bp 0.730059248432808 0.483475051714896 0.13181052 0.060294867 prediction 0.460118496865616 Functional Loss - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65157790 chr7:65157788 . . 0 19 hm1A_associated_SNPs_10369 0 0 0 12 65157766 65157788 mRNA hsa-let-7a INTS4L2 miRanda miRanda
2192 chr7 65157788 65157788 1 + C T LUAD 65157790 + 65157770 65157810 41 AGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGT AGGCACTATGCCTACCTCTGAGACAGTCTTTCTCATCTTGT < 41bp 0.730059248432808 0.483475051714896 0.13181052 0.060294867 prediction 0.460118496865616 Functional Loss - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65157790 chr7:65157788 . . 0 19 hm1A_associated_SNPs_10369 0 0 0 12 65157766 65157788 mRNA hsa-let-7b INTS4L2 miRanda miRanda
2192 chr7 65157788 65157788 1 + C T LUAD 65157790 + 65157770 65157810 41 AGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGT AGGCACTATGCCTACCTCTGAGACAGTCTTTCTCATCTTGT < 41bp 0.730059248432808 0.483475051714896 0.13181052 0.060294867 prediction 0.460118496865616 Functional Loss - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65157790 chr7:65157788 . . 0 19 hm1A_associated_SNPs_10369 0 0 0 12 65157766 65157788 mRNA hsa-let-7c INTS4L2 miRanda miRanda
2192 chr7 65157788 65157788 1 + C T LUAD 65157790 + 65157770 65157810 41 AGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGT AGGCACTATGCCTACCTCTGAGACAGTCTTTCTCATCTTGT < 41bp 0.730059248432808 0.483475051714896 0.13181052 0.060294867 prediction 0.460118496865616 Functional Loss - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65157790 chr7:65157788 . . 0 19 hm1A_associated_SNPs_10369 0 0 0 12 65157766 65157788 mRNA hsa-let-7d INTS4L2 miRanda miRanda
2192 chr7 65157788 65157788 1 + C T LUAD 65157790 + 65157770 65157810 41 AGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGT AGGCACTATGCCTACCTCTGAGACAGTCTTTCTCATCTTGT < 41bp 0.730059248432808 0.483475051714896 0.13181052 0.060294867 prediction 0.460118496865616 Functional Loss - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65157790 chr7:65157788 . . 0 19 hm1A_associated_SNPs_10369 0 0 0 12 65157766 65157788 mRNA hsa-let-7e INTS4L2 miRanda miRanda
2192 chr7 65157788 65157788 1 + C T LUAD 65157790 + 65157770 65157810 41 AGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGT AGGCACTATGCCTACCTCTGAGACAGTCTTTCTCATCTTGT < 41bp 0.730059248432808 0.483475051714896 0.13181052 0.060294867 prediction 0.460118496865616 Functional Loss - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65157790 chr7:65157788 . . 0 19 hm1A_associated_SNPs_10369 0 0 0 12 65157766 65157788 mRNA hsa-let-7f INTS4L2 miRanda miRanda
2192 chr7 65157788 65157788 1 + C T LUAD 65157790 + 65157770 65157810 41 AGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGT AGGCACTATGCCTACCTCTGAGACAGTCTTTCTCATCTTGT < 41bp 0.730059248432808 0.483475051714896 0.13181052 0.060294867 prediction 0.460118496865616 Functional Loss - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65157790 chr7:65157788 . . 0 19 hm1A_associated_SNPs_10369 0 0 0 12 65157766 65157788 mRNA hsa-miR-98 INTS4L2 miRanda miRanda
2192 chr7 65157788 65157788 1 + C T LUAD 65157790 + 65157770 65157810 41 AGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGT AGGCACTATGCCTACCTCTGAGACAGTCTTTCTCATCTTGT < 41bp 0.730059248432808 0.483475051714896 0.13181052 0.060294867 prediction 0.460118496865616 Functional Loss - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65157790 chr7:65157788 . . 0 19 hm1A_associated_SNPs_10369 0 0 0 12 65157763 65157788 mRNA hsa-let-7g INTS4L2 miRanda miRanda
2192 chr7 65157788 65157788 1 + C T LUAD 65157790 + 65157770 65157810 41 AGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGT AGGCACTATGCCTACCTCTGAGACAGTCTTTCTCATCTTGT < 41bp 0.730059248432808 0.483475051714896 0.13181052 0.060294867 prediction 0.460118496865616 Functional Loss - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65157790 chr7:65157788 . . 0 19 hm1A_associated_SNPs_10369 0 0 0 12 65157764 65157788 mRNA hsa-let-7i INTS4L2 miRanda miRanda
2192 chr7 65157788 65157788 1 + C T LUAD 65157790 + 65157770 65157810 41 AGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGT AGGCACTATGCCTACCTCTGAGACAGTCTTTCTCATCTTGT < 41bp 0.730059248432808 0.483475051714896 0.13181052 0.060294867 prediction 0.460118496865616 Functional Loss - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65157790 chr7:65157788 . . 0 19 hm1A_associated_SNPs_10369 0 0 0 12 65157780 65157801 mRNA hsa-miR-320a INTS4L2 miRanda miRanda
2192 chr7 65157788 65157788 1 + C T LUAD 65157790 + 65157770 65157810 41 AGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGT AGGCACTATGCCTACCTCTGAGACAGTCTTTCTCATCTTGT < 41bp 0.730059248432808 0.483475051714896 0.13181052 0.060294867 prediction 0.460118496865616 Functional Loss - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65157790 chr7:65157788 . . 0 19 hm1A_associated_SNPs_10369 0 0 0 12 65157780 65157801 mRNA hsa-miR-320b INTS4L2 miRanda miRanda
2192 chr7 65157788 65157788 1 + C T LUAD 65157790 + 65157770 65157810 41 AGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGT AGGCACTATGCCTACCTCTGAGACAGTCTTTCTCATCTTGT < 41bp 0.730059248432808 0.483475051714896 0.13181052 0.060294867 prediction 0.460118496865616 Functional Loss - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65157790 chr7:65157788 . . 0 19 hm1A_associated_SNPs_10369 0 0 0 12 65157782 65157801 mRNA hsa-miR-320c INTS4L2 miRanda miRanda
2192 chr22 17310021 17310021 1 + C T UCEC 17310023 + 17310003 17310043 41 TGTGGTTGTAAATGACTGCGACAGCTGATACATCAGTTGCC TGTGGTTGTAAATGACTGTGACAGCTGATACATCAGTTGCC < 41bp 0.771423758055427 0.541805553017982 0.07613042 0.06541234 prediction 0.45923641007489 Functional Loss - HSFY1P1 ENSG00000229027 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:17310023 chr22:17310021 . . 0 19 hm1A_associated_SNPs_10461 0 0 0 2 17310000 17310022 mRNA hsa-miR-103 HSFYL1 miRanda miRanda
2192 chr22 17310021 17310021 1 + C T UCEC 17310023 + 17310003 17310043 41 TGTGGTTGTAAATGACTGCGACAGCTGATACATCAGTTGCC TGTGGTTGTAAATGACTGTGACAGCTGATACATCAGTTGCC < 41bp 0.771423758055427 0.541805553017982 0.07613042 0.06541234 prediction 0.45923641007489 Functional Loss - HSFY1P1 ENSG00000229027 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:17310023 chr22:17310021 . . 0 19 hm1A_associated_SNPs_10461 0 0 0 2 17310000 17310022 mRNA hsa-miR-107 HSFYL1 miRanda miRanda
2192 chr3 36524539 36524539 1 + C T UCEC 36524541 + 36524521 36524561 41 TAAGATGAGCATCCACCACAAGTGCACAGATGGCCTGGCAC TAAGATGAGCATCCACCATAAGTGCACAGATGGCCTGGCAC < 41bp 0.78723457949835 0.557978082139776 0.3105992 0.3275078 prediction 0.458512994717149 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36524541 chr3:36524539 synonymous SNV . 0 19 hm1A_associated_SNPs_10533 0 0 0 1 36524536 36524559 mRNA hsa-miR-338-3p STAC miRanda miRanda
2192 chr2 234676526 234676526 1 + C T BLCA 234676528 + 234676508 234676548 41 ACACTGGAACCCGACCATCGAATCTTGCGAACAACACGATA ACACTGGAACCCGACCATTGAATCTTGCGAACAACACGATA < 41bp 0.820856774423159 0.59162955399 0.22782123 0.13298136 prediction 0.458454440866317 Functional Loss - UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 ENSG00000167165;ENSG00000240224;ENSG00000241119;ENSG00000241635;ENSG00000242366;ENSG00000242515;ENSG00000243135;ENSG00000244122;ENSG00000244474 CDS Human other chr2:234676528 chr2:234676526 nonsynonymous SNV 0.380 1 19 hm1A_associated_SNPs_10535 0 0 0 1 234676521 234676542 mRNA hsa-miR-375 UGT1A4 miRanda miRanda
2192 chr11 111431024 111431024 1 + C T rs77694317 111431026 + 111431006 111431046 41 CGATGACATGTCTTGTGACTATGACAACATGGCTGTGAACC CGATGACATGTCTTGTGATTATGACAACATGGCTGTGAACC < 41bp 0.729195449490381 0.430385342994161 0.28745228 0.22618544 prediction 0.458390898980761 Functional Loss - LAYN ENSG00000204381 CDS Human protein_coding chr11:111431026 chr11:111431024 synonymous SNV . 0 19 hm1A_associated_SNPs_10542 0 0 1 1 111431009 111431032 mRNA hsa-miR-153 LAYN miRanda miRanda
2192 chr19 32959681 32959681 1 + C A UCEC 32959683 + 32959663 32959703 41 CTCCGAGTTGAGAGAATTCTATGATCCAGATACAGTGGAGC CTCCGAGTTGAGAGAATTATATGATCCAGATACAGTGGAGC < 41bp 0.789220971657944 0.560135912991848 0.2301803 0.13978335 prediction 0.458170117332192 Functional Loss - DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32959683 chr19:32959681 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_10562 0 0 1 2 32959667 32959687 mRNA hsa-miR-376a DPY19L3 miRanda miRanda
2192 chr19 32959681 32959681 1 + C A UCEC 32959683 + 32959663 32959703 41 CTCCGAGTTGAGAGAATTCTATGATCCAGATACAGTGGAGC CTCCGAGTTGAGAGAATTATATGATCCAGATACAGTGGAGC < 41bp 0.789220971657944 0.560135912991848 0.2301803 0.13978335 prediction 0.458170117332192 Functional Loss - DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32959683 chr19:32959681 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_10562 0 0 1 2 32959666 32959687 mRNA hsa-miR-376b DPY19L3 miRanda miRanda
2192 chr17 73738775 73738775 1 + C T CESC 73738777 + 73738757 73738797 41 GCTGCTGGTGGAGGCCATCGACGTGCCCGCAGGCACTGCCA GCTGCTGGTGGAGGCCATTGACGTGCCCGCAGGCACTGCCA < 41bp 0.779886671126789 0.550815300424074 0.7487856 0.72138643 prediction 0.458142741405431 Functional Loss - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73738777 chr17:73738775 synonymous SNV . 0 19 hm1A_associated_SNPs_10566 0 0 0 1 73738775 73738797 mRNA hsa-miR-34c-5p ITGB4 miRanda miRanda
2192 chr22 35811929 35811929 1 + C T UCEC 35811931 + 35811911 35811951 41 CGGAGCCATGGTCCTGGCCGATGGTGGGGTCGTCTGTATTG CGGAGCCATGGTCCTGGCTGATGGTGGGGTCGTCTGTATTG < 41bp 0.847470682735728 0.618426948906373 0.7952787 0.67115635 prediction 0.458087467658712 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35811931 chr22:35811929 synonymous SNV . 0 19 hm1A_associated_SNPs_10572 0 0 1 1 35811922 35811943 mRNA hsa-miR-551a MCM5 miRanda miRanda
2192 chr16 15501901 15501901 1 + T C LIHC 15501900 + 15501880 15501920 41 CAGCAGAGTGGTGACGGCACATTCAAGTCAGCTTTCACCAT CAGCAGAGTGGTGACGGCACACTCAAGTCAGCTTTCACCAT < 41bp 0.752350375958959 0.523347973871403 0.17760769 0.19404045 prediction 0.458004804175112 Functional Loss - MPV17L ENSG00000156968 CDS Human protein_coding chr16:15501900 chr16:15501901 nonsynonymous SNV 0.067 1 22 hm1A_associated_SNPs_10579 0 0 0 5 15501894 15501915 mRNA hsa-miR-320a MPV17L miRanda miRanda
2192 chr16 15501901 15501901 1 + T C LIHC 15501900 + 15501880 15501920 41 CAGCAGAGTGGTGACGGCACATTCAAGTCAGCTTTCACCAT CAGCAGAGTGGTGACGGCACACTCAAGTCAGCTTTCACCAT < 41bp 0.752350375958959 0.523347973871403 0.17760769 0.19404045 prediction 0.458004804175112 Functional Loss - MPV17L ENSG00000156968 CDS Human protein_coding chr16:15501900 chr16:15501901 nonsynonymous SNV 0.067 1 22 hm1A_associated_SNPs_10579 0 0 0 5 15501894 15501902 mRNA hsa-miR-455-5p MPV17L miRanda miRanda
2192 chr16 15501901 15501901 1 + T C LIHC 15501900 + 15501880 15501920 41 CAGCAGAGTGGTGACGGCACATTCAAGTCAGCTTTCACCAT CAGCAGAGTGGTGACGGCACACTCAAGTCAGCTTTCACCAT < 41bp 0.752350375958959 0.523347973871403 0.17760769 0.19404045 prediction 0.458004804175112 Functional Loss - MPV17L ENSG00000156968 CDS Human protein_coding chr16:15501900 chr16:15501901 nonsynonymous SNV 0.067 1 22 hm1A_associated_SNPs_10579 0 0 0 5 15501894 15501915 mRNA hsa-miR-320b MPV17L miRanda miRanda
2192 chr16 15501901 15501901 1 + T C LIHC 15501900 + 15501880 15501920 41 CAGCAGAGTGGTGACGGCACATTCAAGTCAGCTTTCACCAT CAGCAGAGTGGTGACGGCACACTCAAGTCAGCTTTCACCAT < 41bp 0.752350375958959 0.523347973871403 0.17760769 0.19404045 prediction 0.458004804175112 Functional Loss - MPV17L ENSG00000156968 CDS Human protein_coding chr16:15501900 chr16:15501901 nonsynonymous SNV 0.067 1 22 hm1A_associated_SNPs_10579 0 0 0 5 15501896 15501915 mRNA hsa-miR-320c MPV17L miRanda miRanda
2192 chr16 15501901 15501901 1 + T C LIHC 15501900 + 15501880 15501920 41 CAGCAGAGTGGTGACGGCACATTCAAGTCAGCTTTCACCAT CAGCAGAGTGGTGACGGCACACTCAAGTCAGCTTTCACCAT < 41bp 0.752350375958959 0.523347973871403 0.17760769 0.19404045 prediction 0.458004804175112 Functional Loss - MPV17L ENSG00000156968 CDS Human protein_coding chr16:15501900 chr16:15501901 nonsynonymous SNV 0.067 1 22 hm1A_associated_SNPs_10579 0 0 0 5 15501897 15501915 mRNA hsa-miR-320d MPV17L miRanda miRanda
2192 chr10 99215489 99215489 1 + C T UCEC 99215491 + 99215471 99215511 41 TCGAGGTGAGACTAGCATCGAAAGGCACATCAACAAGAAGG TCGAGGTGAGACTAGCATTGAAAGGCACATCAACAAGAAGG < 41bp 0.83382859000878 0.60485636701972 0.41017795 0.19093934 prediction 0.457944445978121 Functional Loss - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99215491 chr10:99215489 synonymous SNV . 0 19 hm1A_associated_SNPs_10587 0 0 1 1 99215478 99215501 mRNA hsa-miR-455-5p ZDHHC16 miRanda miRanda
2192 chr1 160134055 160134055 1 + C T COAD 160134057 + 160134037 160134077 41 ACCTATCGCTGCTGAGATCGAACACTTCATCCATCTGATCA ACCTATCGCTGCTGAGATTGAACACTTCATCCATCTGATCA < 41bp 0.772285199095375 0.54338641242346 0.32608056 0.18000042 prediction 0.45779757334383 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160134057 chr1:160134055 synonymous SNV . 0 19 hm1A_associated_SNPs_10606 0 0 0 1 160134054 160134077 mRNA hsa-miR-383 ATP1A4 miRanda miRanda
2192 chr9 131004537 131004537 1 + C G LUSC 131004539 + 131004519 131004559 41 CAAGGGCTGGCTGACTATCAATAATATTGGCATCATGAAAG CAAGGGCTGGCTGACTATGAATAATATTGGCATCATGAAAG < 41bp 0.745527971698898 0.516809304659628 0.21832973 0.29250574 prediction 0.45743733407854 Functional Loss - DNM1 ENSG00000106976 CDS Human protein_coding chr9:131004539 chr9:131004537 nonsynonymous SNV 1.000 5 19 hm1A_associated_SNPs_10637 0 0 1 1 131004536 131004557 mRNA hsa-miR-433 DNM1 miRanda miRanda
2192 chr8 22106136 22106136 1 + T C STAD 22106135 + 22106115 22106155 41 CTGGCCCCAAGGAAGAGGACATGGAGGTGGACATACCTGCT CTGGCCCCAAGGAAGAGGACACGGAGGTGGACATACCTGCT < 41bp 0.730873081783989 0.50216024124166 0.2354101 0.30765703 prediction 0.457425681084657 Functional Loss - POLR3D ENSG00000168495 CDS Human protein_coding chr8:22106135 chr8:22106136 nonsynonymous SNV 0.994 1 22 hm1A_associated_SNPs_10638 0 0 1 1 22106136 22106157 mRNA hsa-miR-214 POLR3D miRanda miRanda
2192 chr10 131959074 131959074 1 + C T PAAD 131959076 + 131959056 131959096 41 TTAGAATTCTCAGAAAATCGACCGATTAGATGGTGCACATG TTAGAATTCTCAGAAAATTGACCGATTAGATGGTGCACATG < 41bp 0.728638976722391 0.459279051031281 0.1430116 0.11329332 prediction 0.457277953444782 Functional Loss - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131959076 chr10:131959074 synonymous SNV . 0 19 hm1A_associated_SNPs_10650 0 0 1 1 131959072 131959096 mRNA hsa-miR-25 GLRX3 miRanda miRanda
2192 chr2 239141152 239141152 1 + C A LUAD 239141154 + 239141134 239141174 41 CATATCCAATGCCGAACCCAAGCGCAATAGCAATAGACAGC CATATCCAATGCCGAACCAAAGCGCAATAGCAATAGACAGC < 41bp 0.762614096893901 0.534061169191615 0.5540835 0.55151296 prediction 0.457105855404573 Functional Loss - LOC643387 ENSG00000225057 ncRNA_exonic Human processed_transcript chr2:239141154 chr2:239141152 . . 0 19 hm1A_associated_SNPs_10664 0 0 0 2 239141147 239141169 mRNA hsa-miR-137 LOC643387 miRanda miRanda
2192 chr2 239141152 239141152 1 + C A LUAD 239141154 + 239141134 239141174 41 CATATCCAATGCCGAACCCAAGCGCAATAGCAATAGACAGC CATATCCAATGCCGAACCAAAGCGCAATAGCAATAGACAGC < 41bp 0.762614096893901 0.534061169191615 0.5540835 0.55151296 prediction 0.457105855404573 Functional Loss - LOC643387 ENSG00000225057 ncRNA_exonic Human processed_transcript chr2:239141154 chr2:239141152 . . 0 19 hm1A_associated_SNPs_10664 0 0 0 2 239141146 239141166 mRNA hsa-miR-33b LOC643387 miRanda miRanda
2192 chr8 42176072 42176072 1 + C G BLCA 42176074 + 42176054 42176094 41 GTGTCTCTGTCTCCAGTTCAAGAGCCCAAGAGGAATCTCGC GTGTCTCTGTCTCCAGTTGAAGAGCCCAAGAGGAATCTCGC < 41bp 0.733375058446714 0.5053199753129 0.13893825 0.10561192 prediction 0.456110166267628 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42176074 chr8:42176072 nonsynonymous SNV 0.991 3 19 hm1A_associated_SNPs_10746 0 0 1 1 42176070 42176086 mRNA hsa-miR-326 IKBKB miRanda miRanda
2192 chr11 111784328 111784328 1 + C T LUSC 111784330 + 111784310 111784350 41 GAGCCACTTTACCCCAGACGAGGTGACTGTGAGGACTGTGG GAGCCACTTTACCCCAGATGAGGTGACTGTGAGGACTGTGG < 41bp 0.774410042866265 0.546358367626824 0.22854355 0.19007716 prediction 0.456103350478883 Functional Loss - HSPB2 ENSG00000170276;ENSG00000254445 CDS Human other chr11:111784330 chr11:111784328 synonymous SNV . 0 19 hm1A_associated_SNPs_10750 0 0 0 2 111784322 111784342 mRNA hsa-miR-27a HSPB2 miRanda miRanda
2192 chr11 111784328 111784328 1 + C T LUSC 111784330 + 111784310 111784350 41 GAGCCACTTTACCCCAGACGAGGTGACTGTGAGGACTGTGG GAGCCACTTTACCCCAGATGAGGTGACTGTGAGGACTGTGG < 41bp 0.774410042866265 0.546358367626824 0.22854355 0.19007716 prediction 0.456103350478883 Functional Loss - HSPB2 ENSG00000170276;ENSG00000254445 CDS Human other chr11:111784330 chr11:111784328 synonymous SNV . 0 19 hm1A_associated_SNPs_10750 0 0 0 2 111784322 111784342 mRNA hsa-miR-27b HSPB2 miRanda miRanda
2192 chr10 101507035 101507035 1 + C T SKCM 101507037 + 101507017 101507057 41 TTGACATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTC TTGACATGGTTCATGATCTAATGGCAGCTCTGGAGACCCTC < 41bp 0.858853100128941 0.630846675227542 0.29582363 0.26133907 prediction 0.456012849802798 Functional Loss - CUTC ENSG00000119929 CDS Human protein_coding chr10:101507037 chr10:101507035 nonsynonymous SNV 1.000 1 19 hm1A_associated_SNPs_10758 0 0 1 1 101507022 101507046 mRNA hsa-miR-22 CUTC miRanda miRanda
2192 chr15 39889417 39889417 1 + C T rs575789228 39889419 + 39889399 39889439 41 CCTGTAGAGTTAGTATTTCTATTTTTATATAATGTTTGCAC CCTGTAGAGTTAGTATTTTTATTTTTATATAATGTTTGCAC < 41bp 0.727855013928601 0.425775062633071 0.0316782 0.03518042 prediction 0.455710027857202 Functional Loss - THBS1 ENSG00000137801 UTR3 Human protein_coding chr15:39889419 chr15:39889417 . . 0 19 hm1A_associated_SNPs_10790 0 0 1 5 39889417 39889440 mRNA hsa-miR-19a THBS1 miRanda miRanda
2192 chr15 39889417 39889417 1 + C T rs575789228 39889419 + 39889399 39889439 41 CCTGTAGAGTTAGTATTTCTATTTTTATATAATGTTTGCAC CCTGTAGAGTTAGTATTTTTATTTTTATATAATGTTTGCAC < 41bp 0.727855013928601 0.425775062633071 0.0316782 0.03518042 prediction 0.455710027857202 Functional Loss - THBS1 ENSG00000137801 UTR3 Human protein_coding chr15:39889419 chr15:39889417 . . 0 19 hm1A_associated_SNPs_10790 0 0 1 5 39889417 39889440 mRNA hsa-miR-19b THBS1 miRanda miRanda
2192 chr15 39889417 39889417 1 + C T rs575789228 39889419 + 39889399 39889439 41 CCTGTAGAGTTAGTATTTCTATTTTTATATAATGTTTGCAC CCTGTAGAGTTAGTATTTTTATTTTTATATAATGTTTGCAC < 41bp 0.727855013928601 0.425775062633071 0.0316782 0.03518042 prediction 0.455710027857202 Functional Loss - THBS1 ENSG00000137801 UTR3 Human protein_coding chr15:39889419 chr15:39889417 . . 0 19 hm1A_associated_SNPs_10790 0 0 1 5 39889406 39889428 mRNA hsa-miR-340 THBS1 miRanda miRanda
2192 chr15 39889417 39889417 1 + C T rs575789228 39889419 + 39889399 39889439 41 CCTGTAGAGTTAGTATTTCTATTTTTATATAATGTTTGCAC CCTGTAGAGTTAGTATTTTTATTTTTATATAATGTTTGCAC < 41bp 0.727855013928601 0.425775062633071 0.0316782 0.03518042 prediction 0.455710027857202 Functional Loss - THBS1 ENSG00000137801 UTR3 Human protein_coding chr15:39889419 chr15:39889417 . . 0 19 hm1A_associated_SNPs_10790 0 0 1 5 39889409 39889429 mRNA hsa-miR-410 THBS1 miRanda miRanda
2192 chr15 39889417 39889417 1 + C T rs575789228 39889419 + 39889399 39889439 41 CCTGTAGAGTTAGTATTTCTATTTTTATATAATGTTTGCAC CCTGTAGAGTTAGTATTTTTATTTTTATATAATGTTTGCAC < 41bp 0.727855013928601 0.425775062633071 0.0316782 0.03518042 prediction 0.455710027857202 Functional Loss - THBS1 ENSG00000137801 UTR3 Human protein_coding chr15:39889419 chr15:39889417 . . 0 19 hm1A_associated_SNPs_10790 0 0 1 5 39889415 39889437 mRNA hsa-miR-494 THBS1 miRanda miRanda
2192 chr10 88447004 88447004 1 + C T PRAD 88447006 + 88446986 88447026 41 GCCATCGCTGGGCAGGCCCAAGCCCAAGGCAGTGACTTCAG GCCATCGCTGGGCAGGCCTAAGCCCAAGGCAGTGACTTCAG < 41bp 0.727727282755593 0.491943832478541 0.46576443 0.36495477 prediction 0.455454565511186 Functional Loss - LDB3 ENSG00000122367 CDS Human protein_coding chr10:88447006 chr10:88447004 stopgain 1.000 0 19 hm1A_associated_SNPs_10813 0 0 0 1 88447004 88447024 mRNA hsa-miR-224 LDB3 miRanda miRanda
2192 chr4 44682767 44682767 1 + C T HNSC 44682769 + 44682749 44682789 41 GATAAATTGCAAGTGGAACGAGAAAGAGGAATCACTGTTAA GATAAATTGCAAGTGGAATGAGAAAGAGGAATCACTGTTAA < 41bp 0.817610521424967 0.590133977505797 0.19399664 0.16920048 prediction 0.454953087838341 Functional Loss - GUF1 ENSG00000151806 CDS Human protein_coding chr4:44682769 chr4:44682767 stopgain 1.000 1 19 hm1A_associated_SNPs_10874 0 0 1 3 44682755 44682779 mRNA hsa-miR-204 GUF1 miRanda miRanda
2192 chr4 44682767 44682767 1 + C T HNSC 44682769 + 44682749 44682789 41 GATAAATTGCAAGTGGAACGAGAAAGAGGAATCACTGTTAA GATAAATTGCAAGTGGAATGAGAAAGAGGAATCACTGTTAA < 41bp 0.817610521424967 0.590133977505797 0.19399664 0.16920048 prediction 0.454953087838341 Functional Loss - GUF1 ENSG00000151806 CDS Human protein_coding chr4:44682769 chr4:44682767 stopgain 1.000 1 19 hm1A_associated_SNPs_10874 0 0 1 3 44682767 44682788 mRNA hsa-miR-128 GUF1 miRanda miRanda
2192 chr4 44682767 44682767 1 + C T HNSC 44682769 + 44682749 44682789 41 GATAAATTGCAAGTGGAACGAGAAAGAGGAATCACTGTTAA GATAAATTGCAAGTGGAATGAGAAAGAGGAATCACTGTTAA < 41bp 0.817610521424967 0.590133977505797 0.19399664 0.16920048 prediction 0.454953087838341 Functional Loss - GUF1 ENSG00000151806 CDS Human protein_coding chr4:44682769 chr4:44682767 stopgain 1.000 1 19 hm1A_associated_SNPs_10874 0 0 1 3 44682767 44682788 mRNA hsa-miR-132 GUF1 miRanda miRanda
2192 chr1 149376893 149376893 1 + C T GBM 149376895 + 149376875 149376915 41 CTCTGGGTTATACTGGTGCGAGGCTGCCACAGAGGATGGAA CTCTGGGTTATACTGGTGTGAGGCTGCCACAGAGGATGGAA < 41bp 0.734709387845838 0.507244250318858 0.24004823 0.14251956 prediction 0.45493027505396 Functional Loss - FCGR1CP ENSG00000253193 ncRNA_exonic Human other chr1:149376895 chr1:149376893 . . 0 19 hm1A_associated_SNPs_10877 0 0 0 1 149376887 149376909 mRNA hsa-miR-326 FCGR1C miRanda miRanda
2192 chr6 114240434 114240434 1 + C T UCEC 114240436 + 114240416 114240456 41 CTTACACCAAACTCTGTTCGATTCACGACTTGGAAAAGCAA CTTACACCAAACTCTGTTTGATTCACGACTTGGAAAAGCAA < 41bp 0.764311679465342 0.537536472618557 0.8091586 0.09250292 prediction 0.45355041369357 Functional Loss - FLJ34503 ENSG00000175967 ncRNA_exonic Human antisense chr6:114240436 chr6:114240434 . . 0 19 hm1A_associated_SNPs_11012 0 0 0 1 114240413 114240437 mRNA hsa-miR-421 FLJ34503 miRanda miRanda
2192 chrX 37651246 37651246 1 + C T STAD 37651248 + 37651228 37651268 41 TGCTGCTCAACAAGAGTTCGAAGACAACTGGACAGGAATCT TGCTGCTCAACAAGAGTTTGAAGACAACTGGACAGGAATCT < 41bp 0.828176087671727 0.601450144788622 0.19833249 0.08898935 prediction 0.453451885766209 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37651248 chrX:37651246 stopgain 1.000 1 19 hm1A_associated_SNPs_11024 1 0 0 3 37651235 37651259 mRNA hsa-miR-199a-5p CYBB miRanda miRanda
2192 chrX 37651246 37651246 1 + C T STAD 37651248 + 37651228 37651268 41 TGCTGCTCAACAAGAGTTCGAAGACAACTGGACAGGAATCT TGCTGCTCAACAAGAGTTTGAAGACAACTGGACAGGAATCT < 41bp 0.828176087671727 0.601450144788622 0.19833249 0.08898935 prediction 0.453451885766209 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37651248 chrX:37651246 stopgain 1.000 1 19 hm1A_associated_SNPs_11024 1 0 0 3 37651235 37651259 mRNA hsa-miR-199b-5p CYBB miRanda miRanda
2192 chrX 37651246 37651246 1 + C T STAD 37651248 + 37651228 37651268 41 TGCTGCTCAACAAGAGTTCGAAGACAACTGGACAGGAATCT TGCTGCTCAACAAGAGTTTGAAGACAACTGGACAGGAATCT < 41bp 0.828176087671727 0.601450144788622 0.19833249 0.08898935 prediction 0.453451885766209 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37651248 chrX:37651246 stopgain 1.000 1 19 hm1A_associated_SNPs_11024 1 0 0 3 37651238 37651260 mRNA hsa-miR-145 CYBB miRanda miRanda
2192 chrX 48564769 48564769 1 + C T UCEC 48564771 + 48564751 48564791 41 CACCGTGGATGCCGCCTACTATGGCAACATCTCCCACTTTG CACCGTGGATGCCGCCTATTATGGCAACATCTCCCACTTTG < 41bp 0.845045548031567 0.618413941687286 0.29497504 0.22216529 prediction 0.453263212688561 Functional Loss - SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48564771 chrX:48564769 nonsynonymous SNV . 0 19 hm1A_associated_SNPs_11043 0 0 1 1 48564763 48564785 mRNA hsa-miR-122 SUV39H1 miRanda miRanda
2192 chr11 43940667 43940667 1 + C T UCEC 43940669 + 43940649 43940689 41 TGTTAATCATGGAAGGAGCGACACAAGCTGACTGGCAGGTG TGTTAATCATGGAAGGAGTGACACAAGCTGACTGGCAGGTG < 41bp 0.818031440754278 0.59145519267954 0.18534473 0.12152916 prediction 0.453152496149476 Functional Loss - ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43940669 chr11:43940667 nonsynonymous SNV 0.978 2 19 hm1A_associated_SNPs_11050 0 0 1 1 43940656 43940675 mRNA hsa-miR-599 ALKBH3 miRanda miRanda
2192 chr17 37819126 37819126 1 + C T COAD 37819128 + 37819108 37819148 41 GAATTTGCCTTTCACCTGCGACAGCGCATCAGCGAGCTGGG GAATTTGCCTTTCACCTGTGACAGCGCATCAGCGAGCTGGG < 41bp 0.851893717761819 0.62541386733125 0.31056592 0.20089379 prediction 0.452959700861137 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37819128 chr17:37819126 stopgain 0.984 1 19 hm1A_associated_SNPs_11074 0 0 1 1 37819105 37819126 mRNA hsa-miR-125a-3p STARD3 miRanda miRanda
2192 chr20 17956473 17956473 1 + C T UCEC 17956475 + 17956455 17956495 41 AAAGATGTCAGTGGAGTGCGAGCTCTTGAAAGTGCTGTTCA AAAGATGTCAGTGGAGTGTGAGCTCTTGAAAGTGCTGTTCA < 41bp 0.838449883762502 0.612248616602593 0.09615108 0.07561129 prediction 0.452402534319817 Functional Loss - MGME1 ENSG00000125871 CDS Human protein_coding chr20:17956475 chr20:17956473 stopgain 0.976 0 19 hm1A_associated_SNPs_11140 0 0 1 1 17956461 17956483 mRNA hsa-miR-335 C20orf72 miRanda miRanda
2192 chr19 1009626 1009626 1 + C T rs369364553 1009628 + 1009608 1009648 41 AGCCGGGCCGTTTGGGCTCAAGACACACACACAGCGCAGTG AGCCGGGCCGTTTGGGCTTAAGACACACACACAGCGCAGTG < 41bp 0.725824404353184 0.474608996431774 0.46242577 0.5003637 prediction 0.451648808706367 Functional Loss - GRIN3B ENSG00000116032 UTR3 Human protein_coding chr19:1009628 chr19:1009626 . . 0 19 hm1A_associated_SNPs_11227 0 0 0 1 1009613 1009635 mRNA hsa-miR-218 GRIN3B miRanda miRanda
2192 chrX 37642787 37642787 1 + C T LGG 37642789 + 37642769 37642809 41 TGCAGCCTGCCTGAATTTCAACTGCATGCTGATTCTCTTGC TGCAGCCTGCCTGAATTTTAACTGCATGCTGATTCTCTTGC < 41bp 0.820920534108195 0.595096673098338 0.093343705 0.08043331 prediction 0.451647722019715 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37642789 chrX:37642787 synonymous SNV . 0 19 hm1A_associated_SNPs_11228 0 0 0 1 37642777 37642799 mRNA hsa-miR-424 CYBB miRanda miRanda
2192 chr19 36168906 36168906 1 + C A UCEC 36168908 + 36168888 36168928 41 GCTGATAGCCATGTATTTCTACACCATGCTCTGAGGGACAG GCTGATAGCCATGTATTTATACACCATGCTCTGAGGGACAG < 41bp 0.725657076380517 0.446497693122236 0.14696494 0.1390304 prediction 0.451314152761034 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36168908 chr19:36168906 nonsynonymous SNV 0.997 0 19 hm1A_associated_SNPs_11260 0 0 0 1 36168893 36168917 mRNA hsa-miR-138 UPK1A miRanda miRanda
2192 chr11 65486406 65486406 1 - A C HNSC 65486407 - 65486387 65486427 41 ACCTTGTAGTAGTTGATGAGATTGAGGTACTGCAGAGTGGA ACCTTGTAGTAGTTGATGAGAGTGAGGTACTGCAGAGTGGA < 41bp 0.724963898833278 0.495352426438037 0.17110226 0.16248417 prediction 0.449927797666557 Functional Loss - KAT5 ENSG00000172977 CDS Human protein_coding chr11:65486407 chr11:65486406 nonsynonymous SNV 0.999 3 22 hm1A_associated_SNPs_11380 0 0 1 1 65486404 65486424 mRNA hsa-miR-216a RNASEH2C miRanda miRanda
2192 chr11 94231374 94231374 1 + C T UCEC 94231376 + 94231356 94231396 41 GCTCATTGCACAGGGGGCCGATGTTCATGCAGTGACTGTGG GCTCATTGCACAGGGGGCTGATGTTCATGCAGTGACTGTGG < 41bp 0.865524197038997 0.640731197709006 0.39997643 0.10530087 prediction 0.449585998659982 Functional Loss - ANKRD49 ENSG00000168876 CDS Human protein_coding chr11:94231376 chr11:94231374 synonymous SNV . 0 19 hm1A_associated_SNPs_11419 0 0 1 2 94231374 94231395 mRNA hsa-miR-101 ANKRD49 miRanda miRanda
2192 chr11 94231374 94231374 1 + C T UCEC 94231376 + 94231356 94231396 41 GCTCATTGCACAGGGGGCCGATGTTCATGCAGTGACTGTGG GCTCATTGCACAGGGGGCTGATGTTCATGCAGTGACTGTGG < 41bp 0.865524197038997 0.640731197709006 0.39997643 0.10530087 prediction 0.449585998659982 Functional Loss - ANKRD49 ENSG00000168876 CDS Human protein_coding chr11:94231376 chr11:94231374 synonymous SNV . 0 19 hm1A_associated_SNPs_11419 0 0 1 2 94231367 94231389 mRNA hsa-miR-217 ANKRD49 miRanda miRanda
2192 chr9 1056892 1056892 1 + T G COAD 1056891 + 1056871 1056911 41 GTTCTCCCCACCCCGACGGAATTTCTCTCCCATTGTTGACA GTTCTCCCCACCCCGACGGAAGTTCTCTCCCATTGTTGACA < 41bp 0.724756443462601 0.473780018287722 0.6572144 0.59509546 prediction 0.449512886925201 Functional Loss - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056891 chr9:1056892 nonsynonymous SNV 0.999 1 22 hm1A_associated_SNPs_11427 0 0 0 3 1056880 1056901 mRNA hsa-miR-185 DMRT2 miRanda miRanda
2192 chr9 1056892 1056892 1 + T G COAD 1056891 + 1056871 1056911 41 GTTCTCCCCACCCCGACGGAATTTCTCTCCCATTGTTGACA GTTCTCCCCACCCCGACGGAAGTTCTCTCCCATTGTTGACA < 41bp 0.724756443462601 0.473780018287722 0.6572144 0.59509546 prediction 0.449512886925201 Functional Loss - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056891 chr9:1056892 nonsynonymous SNV 0.999 1 22 hm1A_associated_SNPs_11427 0 0 0 3 1056890 1056911 mRNA hsa-miR-505 DMRT2 miRanda miRanda
2192 chr9 1056892 1056892 1 + T G COAD 1056891 + 1056871 1056911 41 GTTCTCCCCACCCCGACGGAATTTCTCTCCCATTGTTGACA GTTCTCCCCACCCCGACGGAAGTTCTCTCCCATTGTTGACA < 41bp 0.724756443462601 0.473780018287722 0.6572144 0.59509546 prediction 0.449512886925201 Functional Loss - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056891 chr9:1056892 nonsynonymous SNV 0.999 1 22 hm1A_associated_SNPs_11427 0 0 0 3 1056878 1056898 mRNA hsa-miR-539 DMRT2 miRanda miRanda
2192 chr11 66322638 66322638 1 + C T UCEC 66322640 + 66322620 66322660 41 CTCTGTGCCCTCATCCACCGACACCGCCCTGACCTCATCGA CTCTGTGCCCTCATCCACTGACACCGCCCTGACCTCATCGA < 41bp 0.724726886103695 0.487950451523782 0.5556253 0.28188777 prediction 0.449453772207389 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66322640 chr11:66322638 unknown 0.992 0 19 hm1A_associated_SNPs_11435 0 0 0 2 66322636 66322656 mRNA hsa-let-7b ACTN3 miRanda miRanda
2192 chr11 66322638 66322638 1 + C T UCEC 66322640 + 66322620 66322660 41 CTCTGTGCCCTCATCCACCGACACCGCCCTGACCTCATCGA CTCTGTGCCCTCATCCACTGACACCGCCCTGACCTCATCGA < 41bp 0.724726886103695 0.487950451523782 0.5556253 0.28188777 prediction 0.449453772207389 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66322640 chr11:66322638 unknown 0.992 0 19 hm1A_associated_SNPs_11435 0 0 0 2 66322634 66322656 mRNA hsa-let-7e ACTN3 miRanda miRanda
2192 chr15 63353404 63353404 1 + C T SKCM 63353406 + 63353386 63353426 41 TCCACTAACAGCCAAGTCCGACAGCTGGAAGAACAATTAAG TCCACTAACAGCCAAGTCTGACAGCTGGAAGAACAATTAAG < 41bp 0.790510584525871 0.565825152812137 0.3450032 0.18615472 prediction 0.44937086342747 Functional Loss - TPM1 ENSG00000140416 CDS Human protein_coding chr15:63353406 chr15:63353404 stopgain 1.000 0 19 hm1A_associated_SNPs_11443 1 0 1 1 63353401 63353422 mRNA hsa-miR-375 TPM1 miRanda miRanda
2192 chr17 52991168 52991168 1 + C T LUSC 52991170 + 52991150 52991190 41 AGTCAAAGAAGTATACCTCGACCTGGTTAAGAAAGGCGTTC AGTCAAAGAAGTATACCTTGACCTGGTTAAGAAAGGCGTTC < 41bp 0.807109835641042 0.582521826350852 0.27374786 0.18350732 prediction 0.449176018580379 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52991170 chr17:52991168 synonymous SNV . 0 19 hm1A_associated_SNPs_11458 0 0 1 2 52991151 52991175 mRNA hsa-miR-125a-3p TOM1L1 miRanda miRanda
2192 chr17 52991168 52991168 1 + C T LUSC 52991170 + 52991150 52991190 41 AGTCAAAGAAGTATACCTCGACCTGGTTAAGAAAGGCGTTC AGTCAAAGAAGTATACCTTGACCTGGTTAAGAAAGGCGTTC < 41bp 0.807109835641042 0.582521826350852 0.27374786 0.18350732 prediction 0.449176018580379 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52991170 chr17:52991168 synonymous SNV . 0 19 hm1A_associated_SNPs_11458 0 0 1 2 52991150 52991169 mRNA hsa-miR-202 TOM1L1 miRanda miRanda
2192 chrX 129318513 129318513 1 + T C STAD 129318512 + 129318492 129318532 41 CTTAGCCCTGAAATTTGCTGATGCCCACAACATGCTCTTGT CTTAGCCCTGAAATTTGCTGACGCCCACAACATGCTCTTGT < 41bp 0.724917011441174 0.500478698505786 0.17138755 0.2836231 prediction 0.448876625870775 Functional Loss - RAB33A ENSG00000134594 CDS Human protein_coding chrX:129318512 chrX:129318513 synonymous SNV . 0 22 hm1A_associated_SNPs_11494 0 0 0 1 129318510 129318532 mRNA hsa-miR-335 RAB33A miRanda miRanda
2192 chr10 4884622 4884622 1 + C T UCEC 4884624 + 4884604 4884644 41 TCCTTGCAGATTTTGATCCGATTTCAAATCCAGAGGAATGT TCCTTGCAGATTTTGATCTGATTTCAAATCCAGAGGAATGT < 41bp 0.84464084289323 0.620296714139152 0.5159094 0.11940956 prediction 0.448688257508157 Functional Loss - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4884624 chr10:4884622 stopgain 0.949 1 19 hm1A_associated_SNPs_11518 0 0 0 1 4884613 4884624 mRNA hsa-miR-127-3p AKR1E2 miRanda miRanda
2192 chr15 45848048 45848048 1 + C T UCEC 45848050 + 45848030 45848070 41 GGGAAAAGCTGATGCTGGCAAGGAGGGGAATAACCCTGCAG GGGAAAAGCTGATGCTGGTAAGGAGGGGAATAACCCTGCAG < 41bp 0.724227071847438 0.491545083107408 0.30335027 0.2718916 prediction 0.448454143694875 Functional Loss - HMGN2P46 ENSG00000179362 ncRNA_exonic Human transcribed_processed_pseudogene chr15:45848050 chr15:45848048 . . 0 19 hm1A_associated_SNPs_11540 0 0 0 1 45848027 45848048 mRNA hsa-miR-338-3p C15orf21 miRanda miRanda
2192 chr9 107528641 107528641 1 + C T UCEC 107528643 + 107528623 107528663 41 TACGGGCCCTAGACAATACGATGGAACGTTCTATGAATTTC TACGGGCCCTAGACAATATGATGGAACGTTCTATGAATTTC < 41bp 0.843958435994942 0.61983962894447 0.47954753 0.18810204 prediction 0.448237614100944 Functional Loss - NIPSNAP3B ENSG00000165028 CDS Human protein_coding chr9:107528643 chr9:107528641 synonymous SNV . 0 19 hm1A_associated_SNPs_11566 0 0 1 2 107528641 107528659 mRNA hsa-miR-376a NIPSNAP3B miRanda miRanda
2192 chr9 107528641 107528641 1 + C T UCEC 107528643 + 107528623 107528663 41 TACGGGCCCTAGACAATACGATGGAACGTTCTATGAATTTC TACGGGCCCTAGACAATATGATGGAACGTTCTATGAATTTC < 41bp 0.843958435994942 0.61983962894447 0.47954753 0.18810204 prediction 0.448237614100944 Functional Loss - NIPSNAP3B ENSG00000165028 CDS Human protein_coding chr9:107528643 chr9:107528641 synonymous SNV . 0 19 hm1A_associated_SNPs_11566 0 0 1 2 107528640 107528659 mRNA hsa-miR-376b NIPSNAP3B miRanda miRanda
2192 chr11 105842716 105842716 1 + C T COAD 105842718 + 105842698 105842738 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGACCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGACCCA < 41bp 0.741967360389334 0.517974825478458 0.19330701 0.10869834 prediction 0.447985069821753 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105842718 chr11:105842716 synonymous SNV . 0 19 hm1A_associated_SNPs_11595 0 0 0 8 105842710 105842732 mRNA hsa-miR-181a GRIA4 miRanda miRanda
2192 chr11 105842716 105842716 1 + C T COAD 105842718 + 105842698 105842738 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGACCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGACCCA < 41bp 0.741967360389334 0.517974825478458 0.19330701 0.10869834 prediction 0.447985069821753 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105842718 chr11:105842716 synonymous SNV . 0 19 hm1A_associated_SNPs_11595 0 0 0 8 105842710 105842732 mRNA hsa-miR-181b GRIA4 miRanda miRanda
2192 chr11 105842716 105842716 1 + C T COAD 105842718 + 105842698 105842738 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGACCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGACCCA < 41bp 0.741967360389334 0.517974825478458 0.19330701 0.10869834 prediction 0.447985069821753 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105842718 chr11:105842716 synonymous SNV . 0 19 hm1A_associated_SNPs_11595 0 0 0 8 105842710 105842732 mRNA hsa-miR-181c GRIA4 miRanda miRanda
2192 chr11 105842716 105842716 1 + C T COAD 105842718 + 105842698 105842738 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGACCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGACCCA < 41bp 0.741967360389334 0.517974825478458 0.19330701 0.10869834 prediction 0.447985069821753 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105842718 chr11:105842716 synonymous SNV . 0 19 hm1A_associated_SNPs_11595 0 0 0 8 105842706 105842728 mRNA hsa-miR-204 GRIA4 miRanda miRanda
2192 chr11 105842716 105842716 1 + C T COAD 105842718 + 105842698 105842738 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGACCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGACCCA < 41bp 0.741967360389334 0.517974825478458 0.19330701 0.10869834 prediction 0.447985069821753 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105842718 chr11:105842716 synonymous SNV . 0 19 hm1A_associated_SNPs_11595 0 0 0 8 105842706 105842728 mRNA hsa-miR-211 GRIA4 miRanda miRanda
2192 chr11 105842716 105842716 1 + C T COAD 105842718 + 105842698 105842738 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGACCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGACCCA < 41bp 0.741967360389334 0.517974825478458 0.19330701 0.10869834 prediction 0.447985069821753 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105842718 chr11:105842716 synonymous SNV . 0 19 hm1A_associated_SNPs_11595 0 0 0 8 105842697 105842718 mRNA hsa-miR-126 GRIA4 miRanda miRanda
2192 chr11 105842716 105842716 1 + C T COAD 105842718 + 105842698 105842738 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGACCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGACCCA < 41bp 0.741967360389334 0.517974825478458 0.19330701 0.10869834 prediction 0.447985069821753 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105842718 chr11:105842716 synonymous SNV . 0 19 hm1A_associated_SNPs_11595 0 0 0 8 105842710 105842732 mRNA hsa-miR-181d GRIA4 miRanda miRanda
2192 chr11 105842716 105842716 1 + C T COAD 105842718 + 105842698 105842738 41 GAAAAACAAATGGTGGTACGATAAAGGTGAATGTGGACCCA GAAAAACAAATGGTGGTATGATAAAGGTGAATGTGGACCCA < 41bp 0.741967360389334 0.517974825478458 0.19330701 0.10869834 prediction 0.447985069821753 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105842718 chr11:105842716 synonymous SNV . 0 19 hm1A_associated_SNPs_11595 0 0 0 8 105842701 105842720 mRNA hsa-miR-487b GRIA4 miRanda miRanda
2192 chr1 222922886 222922886 1 + C A UCEC 222922888 + 222922868 222922908 41 GTATGTGTTAAACGAGTTCTATAGGATACAAAACAAGGTAT GTATGTGTTAAACGAGTTATATAGGATACAAAACAAGGTAT < 41bp 0.758326651388999 0.534619575836531 0.05837658 0.03599772 prediction 0.447414151104935 Functional Loss - FAM177B ENSG00000197520 CDS Human protein_coding chr1:222922888 chr1:222922886 nonsynonymous SNV 0.322 1 19 hm1A_associated_SNPs_11659 0 0 0 1 222922862 222922886 mRNA hsa-miR-451 FAM177B miRanda miRanda
2192 chr7 141255291 141255291 1 + C T UCEC 141255293 + 141255273 141255313 41 GTGTTCTTTAAAACGCTTCGAAATCACTGGAAGAAAACTAC GTGTTCTTTAAAACGCTTTGAAATCACTGGAAGAAAACTAC < 41bp 0.833683528637426 0.61045701636284 0.15085173 0.1015521 prediction 0.446453024549173 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141255293 chr7:141255291 stopgain 0.998 1 19 hm1A_associated_SNPs_11765 0 0 1 3 141255281 141255303 mRNA hsa-miR-199a-5p AGK miRanda miRanda
2192 chr7 141255291 141255291 1 + C T UCEC 141255293 + 141255273 141255313 41 GTGTTCTTTAAAACGCTTCGAAATCACTGGAAGAAAACTAC GTGTTCTTTAAAACGCTTTGAAATCACTGGAAGAAAACTAC < 41bp 0.833683528637426 0.61045701636284 0.15085173 0.1015521 prediction 0.446453024549173 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141255293 chr7:141255291 stopgain 0.998 1 19 hm1A_associated_SNPs_11765 0 0 1 3 141255280 141255303 mRNA hsa-miR-199b-5p AGK miRanda miRanda
2192 chr7 141255291 141255291 1 + C T UCEC 141255293 + 141255273 141255313 41 GTGTTCTTTAAAACGCTTCGAAATCACTGGAAGAAAACTAC GTGTTCTTTAAAACGCTTTGAAATCACTGGAAGAAAACTAC < 41bp 0.833683528637426 0.61045701636284 0.15085173 0.1015521 prediction 0.446453024549173 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141255293 chr7:141255291 stopgain 0.998 1 19 hm1A_associated_SNPs_11765 0 0 1 3 141255282 141255304 mRNA hsa-miR-145 AGK miRanda miRanda
2192 chr10 74884048 74884048 1 + C A UCEC 74884050 + 74884030 74884070 41 AAAGGCACTCTTTCAACTCAATGCAAGGGATGCCTCCTTGC AAAGGCACTCTTTCAACTAAATGCAAGGGATGCCTCCTTGC < 41bp 0.805899789954027 0.582782982685802 0.11611837 0.106892526 prediction 0.44623361453645 Functional Loss - NUDT13 ENSG00000166321 CDS Human protein_coding chr10:74884050 chr10:74884048 synonymous SNV . 0 19 hm1A_associated_SNPs_11794 0 0 0 3 74884036 74884055 mRNA hsa-miR-33a NUDT13 miRanda miRanda
2192 chr10 74884048 74884048 1 + C A UCEC 74884050 + 74884030 74884070 41 AAAGGCACTCTTTCAACTCAATGCAAGGGATGCCTCCTTGC AAAGGCACTCTTTCAACTAAATGCAAGGGATGCCTCCTTGC < 41bp 0.805899789954027 0.582782982685802 0.11611837 0.106892526 prediction 0.44623361453645 Functional Loss - NUDT13 ENSG00000166321 CDS Human protein_coding chr10:74884050 chr10:74884048 synonymous SNV . 0 19 hm1A_associated_SNPs_11794 0 0 0 3 74884044 74884063 mRNA hsa-miR-324-5p NUDT13 miRanda miRanda
2192 chr10 74884048 74884048 1 + C A UCEC 74884050 + 74884030 74884070 41 AAAGGCACTCTTTCAACTCAATGCAAGGGATGCCTCCTTGC AAAGGCACTCTTTCAACTAAATGCAAGGGATGCCTCCTTGC < 41bp 0.805899789954027 0.582782982685802 0.11611837 0.106892526 prediction 0.44623361453645 Functional Loss - NUDT13 ENSG00000166321 CDS Human protein_coding chr10:74884050 chr10:74884048 synonymous SNV . 0 19 hm1A_associated_SNPs_11794 0 0 0 3 74884037 74884055 mRNA hsa-miR-33b NUDT13 miRanda miRanda
2192 chrX 53115134 53115134 1 + C T UCEC 53115136 + 53115116 53115156 41 CAACGAGAATCCTGAAGACAATAACAAGAACACTGATGACA CAACGAGAATCCTGAAGATAATAACAAGAACACTGATGACA < 41bp 0.791186092799507 0.568092817172225 0.7053654 0.70809203 prediction 0.446186551254564 Functional Loss - TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53115136 chrX:53115134 synonymous SNV . 0 19 hm1A_associated_SNPs_11802 0 0 1 1 53115116 53115139 mRNA hsa-miR-137 TSPYL2 miRanda miRanda
2192 chr8 24181361 24181361 1 + C T CESC 24181363 + 24181343 24181383 41 ACAGCTTTATAAAAAGCTCAATACTCATGTGGCCTTAGTTG ACAGCTTTATAAAAAGCTTAATACTCATGTGGCCTTAGTTG < 41bp 0.722827981902356 0.432710359590981 0.111347824 0.076753974 prediction 0.445655963804711 Functional Loss - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24181363 chr8:24181361 synonymous SNV . 0 19 hm1A_associated_SNPs_11852 0 0 0 1 24181348 24181369 mRNA hsa-miR-496 ADAM28 miRanda miRanda
2192 chr2 113260632 113260632 1 + C A PRAD 113260634 + 113260614 113260654 41 GCATTCAAAAAGAGTATTCAAAGAACTACGGGAAGTATGAA GCATTCAAAAAGAGTATTAAAAGAACTACGGGAAGTATGAA < 41bp 0.722701402069126 0.497941213515131 0.21234286 0.22006485 prediction 0.445402804138252 Functional Loss - TTL ENSG00000114999 CDS Human protein_coding chr2:113260634 chr2:113260632 stopgain 1.000 1 19 hm1A_associated_SNPs_11887 0 0 1 6 113260626 113260647 mRNA hsa-miR-99a TTL miRanda miRanda
2192 chr2 113260632 113260632 1 + C A PRAD 113260634 + 113260614 113260654 41 GCATTCAAAAAGAGTATTCAAAGAACTACGGGAAGTATGAA GCATTCAAAAAGAGTATTAAAAGAACTACGGGAAGTATGAA < 41bp 0.722701402069126 0.497941213515131 0.21234286 0.22006485 prediction 0.445402804138252 Functional Loss - TTL ENSG00000114999 CDS Human protein_coding chr2:113260634 chr2:113260632 stopgain 1.000 1 19 hm1A_associated_SNPs_11887 0 0 1 6 113260626 113260647 mRNA hsa-miR-100 TTL miRanda miRanda
2192 chr2 113260632 113260632 1 + C A PRAD 113260634 + 113260614 113260654 41 GCATTCAAAAAGAGTATTCAAAGAACTACGGGAAGTATGAA GCATTCAAAAAGAGTATTAAAAGAACTACGGGAAGTATGAA < 41bp 0.722701402069126 0.497941213515131 0.21234286 0.22006485 prediction 0.445402804138252 Functional Loss - TTL ENSG00000114999 CDS Human protein_coding chr2:113260634 chr2:113260632 stopgain 1.000 1 19 hm1A_associated_SNPs_11887 0 0 1 6 113260611 113260632 mRNA hsa-miR-200b TTL miRanda miRanda
2192 chr2 113260632 113260632 1 + C A PRAD 113260634 + 113260614 113260654 41 GCATTCAAAAAGAGTATTCAAAGAACTACGGGAAGTATGAA GCATTCAAAAAGAGTATTAAAAGAACTACGGGAAGTATGAA < 41bp 0.722701402069126 0.497941213515131 0.21234286 0.22006485 prediction 0.445402804138252 Functional Loss - TTL ENSG00000114999 CDS Human protein_coding chr2:113260634 chr2:113260632 stopgain 1.000 1 19 hm1A_associated_SNPs_11887 0 0 1 6 113260610 113260632 mRNA hsa-miR-200c TTL miRanda miRanda
2192 chr2 113260632 113260632 1 + C A PRAD 113260634 + 113260614 113260654 41 GCATTCAAAAAGAGTATTCAAAGAACTACGGGAAGTATGAA GCATTCAAAAAGAGTATTAAAAGAACTACGGGAAGTATGAA < 41bp 0.722701402069126 0.497941213515131 0.21234286 0.22006485 prediction 0.445402804138252 Functional Loss - TTL ENSG00000114999 CDS Human protein_coding chr2:113260634 chr2:113260632 stopgain 1.000 1 19 hm1A_associated_SNPs_11887 0 0 1 6 113260626 113260647 mRNA hsa-miR-99b TTL miRanda miRanda
2192 chr2 113260632 113260632 1 + C A PRAD 113260634 + 113260614 113260654 41 GCATTCAAAAAGAGTATTCAAAGAACTACGGGAAGTATGAA GCATTCAAAAAGAGTATTAAAAGAACTACGGGAAGTATGAA < 41bp 0.722701402069126 0.497941213515131 0.21234286 0.22006485 prediction 0.445402804138252 Functional Loss - TTL ENSG00000114999 CDS Human protein_coding chr2:113260634 chr2:113260632 stopgain 1.000 1 19 hm1A_associated_SNPs_11887 0 0 1 6 113260611 113260632 mRNA hsa-miR-429 TTL miRanda miRanda
2192 chr2 220136767 220136767 1 + C T STAD 220136769 + 220136749 220136789 41 GGAGGAGGGTGAGTTCTCCAAGGCCCATGAGGATATGACTG GGAGGAGGGTGAGTTCTCTAAGGCCCATGAGGATATGACTG < 41bp 0.807115051600994 0.584488929643319 0.29088578 0.2641824 prediction 0.445252243915351 Functional Loss - TUBA4B ENSG00000243910 ncRNA_exonic Human protein_coding chr2:220136769 chr2:220136767 . . 0 19 hm1A_associated_SNPs_11908 0 0 0 3 220136742 220136767 mRNA hsa-miR-146a TUBA4B miRanda miRanda
2192 chr2 220136767 220136767 1 + C T STAD 220136769 + 220136749 220136789 41 GGAGGAGGGTGAGTTCTCCAAGGCCCATGAGGATATGACTG GGAGGAGGGTGAGTTCTCTAAGGCCCATGAGGATATGACTG < 41bp 0.807115051600994 0.584488929643319 0.29088578 0.2641824 prediction 0.445252243915351 Functional Loss - TUBA4B ENSG00000243910 ncRNA_exonic Human protein_coding chr2:220136769 chr2:220136767 . . 0 19 hm1A_associated_SNPs_11908 0 0 0 3 220136759 220136780 mRNA hsa-miR-330-5p TUBA4B miRanda miRanda
2192 chr2 220136767 220136767 1 + C T STAD 220136769 + 220136749 220136789 41 GGAGGAGGGTGAGTTCTCCAAGGCCCATGAGGATATGACTG GGAGGAGGGTGAGTTCTCTAAGGCCCATGAGGATATGACTG < 41bp 0.807115051600994 0.584488929643319 0.29088578 0.2641824 prediction 0.445252243915351 Functional Loss - TUBA4B ENSG00000243910 ncRNA_exonic Human protein_coding chr2:220136769 chr2:220136767 . . 0 19 hm1A_associated_SNPs_11908 0 0 0 3 220136745 220136767 mRNA hsa-miR-146b-5p TUBA4B miRanda miRanda
2192 chr20 32354757 32354757 1 + C T GBM 32354759 + 32354739 32354779 41 CAAGCAGGTGGTCCTCATCGACAGCTCCTACCTGTGCCAAT CAAGCAGGTGGTCCTCATTGACAGCTCCTACCTGTGCCAAT < 41bp 0.722600347731045 0.446858172006999 0.5494925 0.3338182 prediction 0.44520069546209 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32354759 chr20:32354757 synonymous SNV . 0 19 hm1A_associated_SNPs_11918 0 0 0 3 32354747 32354768 mRNA hsa-miR-28-5p ZNF341 miRanda miRanda
2192 chr20 32354757 32354757 1 + C T GBM 32354759 + 32354739 32354779 41 CAAGCAGGTGGTCCTCATCGACAGCTCCTACCTGTGCCAAT CAAGCAGGTGGTCCTCATTGACAGCTCCTACCTGTGCCAAT < 41bp 0.722600347731045 0.446858172006999 0.5494925 0.3338182 prediction 0.44520069546209 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32354759 chr20:32354757 synonymous SNV . 0 19 hm1A_associated_SNPs_11918 0 0 0 3 32354754 32354779 mRNA hsa-miR-96 ZNF341 miRanda miRanda
2192 chr20 32354757 32354757 1 + C T GBM 32354759 + 32354739 32354779 41 CAAGCAGGTGGTCCTCATCGACAGCTCCTACCTGTGCCAAT CAAGCAGGTGGTCCTCATTGACAGCTCCTACCTGTGCCAAT < 41bp 0.722600347731045 0.446858172006999 0.5494925 0.3338182 prediction 0.44520069546209 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32354759 chr20:32354757 synonymous SNV . 0 19 hm1A_associated_SNPs_11918 0 0 0 3 32354746 32354768 mRNA hsa-miR-708 ZNF341 miRanda miRanda
2192 chr2 31489453 31489453 1 + C T LGG 31489455 + 31489435 31489475 41 CAAGGATGGCATGCTGGACGACGACGAGTTTGCACTGGCCA CAAGGATGGCATGCTGGATGACGACGAGTTTGCACTGGCCA < 41bp 0.848593306468835 0.626041417132268 0.49277216 0.3768129 prediction 0.445103778673134 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489455 chr2:31489453 synonymous SNV . 0 19 hm1A_associated_SNPs_11927 0 0 0 10 31489448 31489470 mRNA hsa-miR-19a EHD3 miRanda miRanda
2192 chr2 31489453 31489453 1 + C T LGG 31489455 + 31489435 31489475 41 CAAGGATGGCATGCTGGACGACGACGAGTTTGCACTGGCCA CAAGGATGGCATGCTGGATGACGACGAGTTTGCACTGGCCA < 41bp 0.848593306468835 0.626041417132268 0.49277216 0.3768129 prediction 0.445103778673134 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489455 chr2:31489453 synonymous SNV . 0 19 hm1A_associated_SNPs_11927 0 0 0 10 31489448 31489470 mRNA hsa-miR-19b EHD3 miRanda miRanda
2192 chr2 31489453 31489453 1 + C T LGG 31489455 + 31489435 31489475 41 CAAGGATGGCATGCTGGACGACGACGAGTTTGCACTGGCCA CAAGGATGGCATGCTGGATGACGACGAGTTTGCACTGGCCA < 41bp 0.848593306468835 0.626041417132268 0.49277216 0.3768129 prediction 0.445103778673134 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489455 chr2:31489453 synonymous SNV . 0 19 hm1A_associated_SNPs_11927 0 0 0 10 31489451 31489472 mRNA hsa-miR-148a EHD3 miRanda miRanda
2192 chr2 31489453 31489453 1 + C T LGG 31489455 + 31489435 31489475 41 CAAGGATGGCATGCTGGACGACGACGAGTTTGCACTGGCCA CAAGGATGGCATGCTGGATGACGACGAGTTTGCACTGGCCA < 41bp 0.848593306468835 0.626041417132268 0.49277216 0.3768129 prediction 0.445103778673134 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489455 chr2:31489453 synonymous SNV . 0 19 hm1A_associated_SNPs_11927 0 0 0 10 31489450 31489471 mRNA hsa-miR-130a EHD3 miRanda miRanda
2192 chr2 31489453 31489453 1 + C T LGG 31489455 + 31489435 31489475 41 CAAGGATGGCATGCTGGACGACGACGAGTTTGCACTGGCCA CAAGGATGGCATGCTGGATGACGACGAGTTTGCACTGGCCA < 41bp 0.848593306468835 0.626041417132268 0.49277216 0.3768129 prediction 0.445103778673134 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489455 chr2:31489453 synonymous SNV . 0 19 hm1A_associated_SNPs_11927 0 0 0 10 31489453 31489472 mRNA hsa-miR-152 EHD3 miRanda miRanda
2192 chr2 31489453 31489453 1 + C T LGG 31489455 + 31489435 31489475 41 CAAGGATGGCATGCTGGACGACGACGAGTTTGCACTGGCCA CAAGGATGGCATGCTGGATGACGACGAGTTTGCACTGGCCA < 41bp 0.848593306468835 0.626041417132268 0.49277216 0.3768129 prediction 0.445103778673134 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489455 chr2:31489453 synonymous SNV . 0 19 hm1A_associated_SNPs_11927 0 0 0 10 31489449 31489471 mRNA hsa-miR-301a EHD3 miRanda miRanda
2192 chr2 31489453 31489453 1 + C T LGG 31489455 + 31489435 31489475 41 CAAGGATGGCATGCTGGACGACGACGAGTTTGCACTGGCCA CAAGGATGGCATGCTGGATGACGACGAGTTTGCACTGGCCA < 41bp 0.848593306468835 0.626041417132268 0.49277216 0.3768129 prediction 0.445103778673134 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489455 chr2:31489453 synonymous SNV . 0 19 hm1A_associated_SNPs_11927 0 0 0 10 31489450 31489471 mRNA hsa-miR-130b EHD3 miRanda miRanda
2192 chr2 31489453 31489453 1 + C T LGG 31489455 + 31489435 31489475 41 CAAGGATGGCATGCTGGACGACGACGAGTTTGCACTGGCCA CAAGGATGGCATGCTGGATGACGACGAGTTTGCACTGGCCA < 41bp 0.848593306468835 0.626041417132268 0.49277216 0.3768129 prediction 0.445103778673134 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489455 chr2:31489453 synonymous SNV . 0 19 hm1A_associated_SNPs_11927 0 0 0 10 31489451 31489472 mRNA hsa-miR-148b EHD3 miRanda miRanda
2192 chr2 31489453 31489453 1 + C T LGG 31489455 + 31489435 31489475 41 CAAGGATGGCATGCTGGACGACGACGAGTTTGCACTGGCCA CAAGGATGGCATGCTGGATGACGACGAGTTTGCACTGGCCA < 41bp 0.848593306468835 0.626041417132268 0.49277216 0.3768129 prediction 0.445103778673134 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489455 chr2:31489453 synonymous SNV . 0 19 hm1A_associated_SNPs_11927 0 0 0 10 31489450 31489471 mRNA hsa-miR-454 EHD3 miRanda miRanda
2192 chr2 31489453 31489453 1 + C T LGG 31489455 + 31489435 31489475 41 CAAGGATGGCATGCTGGACGACGACGAGTTTGCACTGGCCA CAAGGATGGCATGCTGGATGACGACGAGTTTGCACTGGCCA < 41bp 0.848593306468835 0.626041417132268 0.49277216 0.3768129 prediction 0.445103778673134 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489455 chr2:31489453 synonymous SNV . 0 19 hm1A_associated_SNPs_11927 0 0 0 10 31489449 31489471 mRNA hsa-miR-301b EHD3 miRanda miRanda
2192 chr20 62326251 62326251 1 + C T STAD 62326253 + 62326233 62326273 41 GACAGCCTATAAGCAAGACGACGACCTCGACAAGGTGCTGG GACAGCCTATAAGCAAGATGACGACCTCGACAAGGTGCTGG < 41bp 0.722129413946786 0.473989636343219 0.48602927 0.4276678 prediction 0.444258827893573 Functional Loss - RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62326253 chr20:62326251 synonymous SNV . 0 19 hm1A_associated_SNPs_12009 0 0 0 2 62326235 62326256 mRNA hsa-miR-187 RTEL1 miRanda miRanda
2192 chr20 62326251 62326251 1 + C T STAD 62326253 + 62326233 62326273 41 GACAGCCTATAAGCAAGACGACGACCTCGACAAGGTGCTGG GACAGCCTATAAGCAAGATGACGACCTCGACAAGGTGCTGG < 41bp 0.722129413946786 0.473989636343219 0.48602927 0.4276678 prediction 0.444258827893573 Functional Loss - RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62326253 chr20:62326251 synonymous SNV . 0 19 hm1A_associated_SNPs_12009 0 0 0 2 62326228 62326252 mRNA hsa-miR-431 RTEL1 miRanda miRanda
2192 chr2 108998221 108998221 1 + C A LUAD 108998223 + 108998203 108998243 41 TTACGTGCACGTAAGGAACAACATGGACTCAGGAGATAGTG TTACGTGCACGTAAGGAAAAACATGGACTCAGGAGATAGTG < 41bp 0.756437737412213 0.534372764794324 0.107041955 0.08833793 prediction 0.444129945235777 Functional Loss - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:108998223 chr2:108998221 nonsynonymous SNV 0.956 4 19 hm1A_associated_SNPs_12021 0 0 0 1 108998218 108998224 mRNA hsa-miR-375 SULT1C4 miRanda miRanda
2192 chr19 57005588 57005588 1 + C T rs568096828 57005590 + 57005570 57005610 41 ACAGACTGGACCCTGCTACGATCTCTCTTGGAGTGGATCAG ACAGACTGGACCCTGCTATGATCTCTCTTGGAGTGGATCAG < 41bp 0.853361058568673 0.631407634804957 0.642743 0.2390157 prediction 0.443906847527431 Functional Loss - ZNF667-AS1 ENSG00000166770 ncRNA_exonic Human lincRNA chr19:57005590 chr19:57005588 . . 0 19 hm1A_associated_SNPs_12043 0 0 0 1 57005570 57005592 mRNA hsa-miR-487b MGC9913 miRanda miRanda
2192 chr3 38565704 38565704 1 + C T BLCA 38565706 + 38565686 38565726 41 AGAAAGATTGAAGGAGCCCGATCAGTGCTCAGACTGGAAAA AGAAAGATTGAAGGAGCCTGATCAGTGCTCAGACTGGAAAA < 41bp 0.879137047050223 0.657227736689968 0.45050812 0.15527514 prediction 0.44381862072051 Functional Loss - EXOG ENSG00000157036 CDS Human protein_coding chr3:38565706 chr3:38565704 stopgain 0.972 0 19 hm1A_associated_SNPs_12061 0 0 1 1 38565702 38565724 mRNA hsa-miR-145 EXOG miRanda miRanda
2192 chr11 43918871 43918871 1 + C A UCEC 43918873 + 43918853 43918893 41 CAGCCATTCTGACAAGAACTAGACTTTGGGCTCCTTGAGAA CAGCCATTCTGACAAGAAATAGACTTTGGGCTCCTTGAGAA < 41bp 0.723254990852979 0.501475128567116 0.1682804 0.1422762 prediction 0.443559724571726 Functional Loss - SEC14L1P1 ENSG00000166199 CDS Human protein_coding chr11:43918873 chr11:43918871 nonsynonymous SNV . 0 19 hm1A_associated_SNPs_12092 0 0 1 1 43918852 43918877 mRNA hsa-miR-223 ALKBH3 miRanda miRanda
2192 chr2 9621462 9621462 1 + C T SKCM 9621464 + 9621444 9621484 41 GAGGAGTACGCTGCGAACCTAAAGAGCATGGTGCAGTACCT GAGGAGTACGCTGCGAACTTAAAGAGCATGGTGCAGTACCT < 41bp 0.774072670945063 0.552399303000271 0.39544427 0.39248863 prediction 0.443346735889584 Functional Loss - IAH1 ENSG00000134330 CDS Human protein_coding chr2:9621464 chr2:9621462 synonymous SNV . 0 19 hm1A_associated_SNPs_12117 0 0 1 1 9621447 9621468 mRNA hsa-miR-9 IAH1 miRanda miRanda
2192 chr14 21961216 21961216 1 + C T GBM 21961218 + 21961198 21961238 41 CCTCCACCTCAGAAAGTTCGAATCAATTTACAGCAACAGCC CCTCCACCTCAGAAAGTTTGAATCAATTTACAGCAACAGCC < 41bp 0.856817479565896 0.635222868568509 0.60680366 0.1250332 prediction 0.443189221994774 Functional Loss - TOX4 ENSG00000092203 CDS Human protein_coding chr14:21961218 chr14:21961216 stopgain 0.998 0 19 hm1A_associated_SNPs_12131 0 0 0 1 21961216 21961241 mRNA hsa-miR-485-5p TOX4 miRanda miRanda
2192 chr9 35440406 35440406 1 + C T UCEC 35440408 + 35440388 35440428 41 GAAAAGGCATCAAAGTGACGATCGAGTCAACAACCAGCCTG GAAAAGGCATCAAAGTGATGATCGAGTCAACAACCAGCCTG < 41bp 0.734810126352804 0.513335609983898 0.17145082 0.114839345 prediction 0.442949032737812 Functional Loss - ATP8B5P ENSG00000179766 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:35440408 chr9:35440406 . . 0 19 hm1A_associated_SNPs_12160 0 0 0 1 35440397 35440421 mRNA hsa-miR-758 LOC158381 miRanda miRanda
2192 chr4 155487073 155487073 1 + C T LUAD 155487075 + 155487055 155487095 41 CTATCGGGCTCGTCCAGCCAAAGCAGCTGCCACTCAAAAGA CTATCGGGCTCGTCCAGCTAAAGCAGCTGCCACTCAAAAGA < 41bp 0.796724578642162 0.575274623111955 0.3464343 0.29294604 prediction 0.442899911060415 Functional Loss - FGB ENSG00000171564 CDS Human protein_coding chr4:155487075 chr4:155487073 synonymous SNV . 0 19 hm1A_associated_SNPs_12167 0 0 1 4 155487064 155487086 mRNA hsa-miR-34a FGB miRanda miRanda
2192 chr4 155487073 155487073 1 + C T LUAD 155487075 + 155487055 155487095 41 CTATCGGGCTCGTCCAGCCAAAGCAGCTGCCACTCAAAAGA CTATCGGGCTCGTCCAGCTAAAGCAGCTGCCACTCAAAAGA < 41bp 0.796724578642162 0.575274623111955 0.3464343 0.29294604 prediction 0.442899911060415 Functional Loss - FGB ENSG00000171564 CDS Human protein_coding chr4:155487075 chr4:155487073 synonymous SNV . 0 19 hm1A_associated_SNPs_12167 0 0 1 4 155487064 155487086 mRNA hsa-miR-34c-5p FGB miRanda miRanda
2192 chr4 155487073 155487073 1 + C T LUAD 155487075 + 155487055 155487095 41 CTATCGGGCTCGTCCAGCCAAAGCAGCTGCCACTCAAAAGA CTATCGGGCTCGTCCAGCTAAAGCAGCTGCCACTCAAAAGA < 41bp 0.796724578642162 0.575274623111955 0.3464343 0.29294604 prediction 0.442899911060415 Functional Loss - FGB ENSG00000171564 CDS Human protein_coding chr4:155487075 chr4:155487073 synonymous SNV . 0 19 hm1A_associated_SNPs_12167 0 0 1 4 155487067 155487086 mRNA hsa-miR-449a FGB miRanda miRanda
2192 chr4 155487073 155487073 1 + C T LUAD 155487075 + 155487055 155487095 41 CTATCGGGCTCGTCCAGCCAAAGCAGCTGCCACTCAAAAGA CTATCGGGCTCGTCCAGCTAAAGCAGCTGCCACTCAAAAGA < 41bp 0.796724578642162 0.575274623111955 0.3464343 0.29294604 prediction 0.442899911060415 Functional Loss - FGB ENSG00000171564 CDS Human protein_coding chr4:155487075 chr4:155487073 synonymous SNV . 0 19 hm1A_associated_SNPs_12167 0 0 1 4 155487067 155487086 mRNA hsa-miR-449b FGB miRanda miRanda
2192 chr22 31971228 31971228 1 + C T COAD 31971230 + 31971210 31971250 41 GTTGCAGAGATGGCTGAGCGATTCCATCATGTCACTGTGCT GTTGCAGAGATGGCTGAGTGATTCCATCATGTCACTGTGCT < 41bp 0.721200812095609 0.446475678221264 0.31252 0.14479092 prediction 0.442401624191218 Functional Loss - SFI1 ENSG00000198089 CDS Human protein_coding chr22:31971230 chr22:31971228 stopgain 0.364 0 19 hm1A_associated_SNPs_12217 0 0 1 3 31971226 31971247 mRNA hsa-miR-152 SFI1 miRanda miRanda
2192 chr22 31971228 31971228 1 + C T COAD 31971230 + 31971210 31971250 41 GTTGCAGAGATGGCTGAGCGATTCCATCATGTCACTGTGCT GTTGCAGAGATGGCTGAGTGATTCCATCATGTCACTGTGCT < 41bp 0.721200812095609 0.446475678221264 0.31252 0.14479092 prediction 0.442401624191218 Functional Loss - SFI1 ENSG00000198089 CDS Human protein_coding chr22:31971230 chr22:31971228 stopgain 0.364 0 19 hm1A_associated_SNPs_12217 0 0 1 3 31971225 31971247 mRNA hsa-miR-148b SFI1 miRanda miRanda
2192 chr22 31971228 31971228 1 + C T COAD 31971230 + 31971210 31971250 41 GTTGCAGAGATGGCTGAGCGATTCCATCATGTCACTGTGCT GTTGCAGAGATGGCTGAGTGATTCCATCATGTCACTGTGCT < 41bp 0.721200812095609 0.446475678221264 0.31252 0.14479092 prediction 0.442401624191218 Functional Loss - SFI1 ENSG00000198089 CDS Human protein_coding chr22:31971230 chr22:31971228 stopgain 0.364 0 19 hm1A_associated_SNPs_12217 0 0 1 3 31971222 31971245 mRNA hsa-miR-542-3p SFI1 miRanda miRanda
2192 chr2 109002781 109002781 1 + T C KIRP 109002780 + 109002760 109002800 41 CAATGGCAAACTATTCATCGATTCCTGCTGAAATCATGGAC CAATGGCAAACTATTCATCGACTCCTGCTGAAATCATGGAC < 41bp 0.736444886056191 0.515349616668894 0.43378443 0.21586305 prediction 0.442190538774594 Functional Loss - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:109002780 chr2:109002781 nonsynonymous SNV 0.003 2 22 hm1A_associated_SNPs_12247 0 0 1 1 109002769 109002790 mRNA hsa-miR-214 SULT1C4 miRanda miRanda
2192 chr16 1826323 1826323 1 + T C rs537727255 1826322 + 1826302 1826342 41 GGGGGAGGACCCCCAGCCACATGTGGACCCTCAGCCTGGGT GGGGGAGGACCCCCAGCCACACGTGGACCCTCAGCCTGGGT < 41bp 0.776819319821629 0.555764096129374 0.21637541 0.25874102 prediction 0.442110447384509 Functional Loss - EME2;SPSB3 ENSG00000197774 UTR3 Human protein_coding chr16:1826322 chr16:1826323 . . 0 22 hm1A_associated_SNPs_12253 0 0 1 1 1826318 1826340 mRNA hsa-miR-125a-3p EME2 miRanda miRanda
2192 chr12 7083533 7083533 1 + C T UCEC 7083535 + 7083515 7083555 41 TGAGCTACTCAACTGTGACAAGCACAAGTCTATATTGTTGA TGAGCTACTCAACTGTGATAAGCACAAGTCTATATTGTTGA < 41bp 0.790276938142924 0.569543793760967 0.12896195 0.125877 prediction 0.441466288763915 Functional Loss - EMG1 ENSG00000126749 CDS Human protein_coding chr12:7083535 chr12:7083533 synonymous SNV . 0 19 hm1A_associated_SNPs_12322 0 0 1 3 7083513 7083533 mRNA hsa-miR-27a EMG1 miRanda miRanda
2192 chr12 7083533 7083533 1 + C T UCEC 7083535 + 7083515 7083555 41 TGAGCTACTCAACTGTGACAAGCACAAGTCTATATTGTTGA TGAGCTACTCAACTGTGATAAGCACAAGTCTATATTGTTGA < 41bp 0.790276938142924 0.569543793760967 0.12896195 0.125877 prediction 0.441466288763915 Functional Loss - EMG1 ENSG00000126749 CDS Human protein_coding chr12:7083535 chr12:7083533 synonymous SNV . 0 19 hm1A_associated_SNPs_12322 0 0 1 3 7083521 7083541 mRNA hsa-miR-218 EMG1 miRanda miRanda
2192 chr12 7083533 7083533 1 + C T UCEC 7083535 + 7083515 7083555 41 TGAGCTACTCAACTGTGACAAGCACAAGTCTATATTGTTGA TGAGCTACTCAACTGTGATAAGCACAAGTCTATATTGTTGA < 41bp 0.790276938142924 0.569543793760967 0.12896195 0.125877 prediction 0.441466288763915 Functional Loss - EMG1 ENSG00000126749 CDS Human protein_coding chr12:7083535 chr12:7083533 synonymous SNV . 0 19 hm1A_associated_SNPs_12322 0 0 1 3 7083513 7083533 mRNA hsa-miR-27b EMG1 miRanda miRanda
2192 chr16 85945181 85945181 1 + C A LUAD 85945183 + 85945163 85945203 41 TGGTTTTCTGTAGGCAAACTAGGCGTGGCAACTGCTGGCTG TGGTTTTCTGTAGGCAAAATAGGCGTGGCAACTGCTGGCTG < 41bp 0.73203173528969 0.511418866246511 0.16586357 0.16471612 prediction 0.441225738086359 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85945183 chr16:85945181 nonsynonymous SNV 0.121 1 19 hm1A_associated_SNPs_12351 0 0 0 1 85945179 85945203 mRNA hsa-miR-424 IRF8 miRanda miRanda
2192 chr12 123464279 123464279 1 + T A rs3759115 123464278 + 123464258 123464298 41 GAATAACTTCCCAGACACTTATCTCCAGGGCAGGGTGCCTT GAATAACTTCCCAGACACTTAACTCCAGGGCAGGGTGCCTT < 41bp 0.725969627941277 0.505715488108242 0.1372076 0.15798515 prediction 0.440508279666071 Functional Loss - OGFOD2 ENSG00000256028 ncRNA_exonic Human processed_transcript chr12:123464278 chr12:123464279 . . 0 22 hm1A_associated_SNPs_12434 0 0 1 1 123464269 123464290 mRNA hsa-miR-874 OGFOD2 miRanda miRanda
2192 chr14 76488697 76488697 1 + C T UCEC 76488699 + 76488679 76488719 41 GCTAAATTACCTCGCTGCCGACAGGGAGGCTGGGCAGGTGA GCTAAATTACCTCGCTGCTGACAGGGAGGCTGGGCAGGTGA < 41bp 0.765704535582928 0.54556563591598 0.46363357 0.39144748 prediction 0.440277799333897 Functional Loss - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76488699 chr14:76488697 stopgain 0.004 1 19 hm1A_associated_SNPs_12457 0 0 1 1 76488683 76488705 mRNA hsa-miR-339-5p C14orf179 miRanda miRanda
2192 chr2 234676872 234676872 1 + C G rs34946978 234676874 + 234676854 234676894 41 TTTGCATCTCAGGTCACCCGATGACCCGTGCCTTTATCACC TTTGCATCTCAGGTCACCGGATGACCCGTGCCTTTATCACC < 41bp 0.754382967384233 0.534258692486462 0.15488338 0.122477174 prediction 0.440248549795544 Functional Loss - UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 ENSG00000167165;ENSG00000240224;ENSG00000241119;ENSG00000241635;ENSG00000242366;ENSG00000242515;ENSG00000243135;ENSG00000244122;ENSG00000244474 CDS Human other chr2:234676874 chr2:234676872 nonsynonymous SNV 0.498 4 19 hm1A_associated_SNPs_12461 0 0 0 2 234676870 234676888 mRNA hsa-miR-124 UGT1A4 miRanda miRanda
2192 chr2 234676872 234676872 1 + C G rs34946978 234676874 + 234676854 234676894 41 TTTGCATCTCAGGTCACCCGATGACCCGTGCCTTTATCACC TTTGCATCTCAGGTCACCGGATGACCCGTGCCTTTATCACC < 41bp 0.754382967384233 0.534258692486462 0.15488338 0.122477174 prediction 0.440248549795544 Functional Loss - UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 ENSG00000167165;ENSG00000240224;ENSG00000241119;ENSG00000241635;ENSG00000242366;ENSG00000242515;ENSG00000243135;ENSG00000244122;ENSG00000244474 CDS Human other chr2:234676874 chr2:234676872 nonsynonymous SNV 0.498 4 19 hm1A_associated_SNPs_12461 0 0 0 2 234676868 234676888 mRNA hsa-miR-506 UGT1A4 miRanda miRanda
2192 chr17 26518101 26518101 1 + C T GBM 26518103 + 26518083 26518123 41 CCCTACCTAGATGAAGGGCGACTACGATATCACACATGTAT CCCTACCTAGATGAAGGGTGACTACGATATCACACATGTAT < 41bp 0.720023783986172 0.440147921393649 0.14035481 0.12333545 prediction 0.440047567972344 Functional Loss - NLK ENSG00000087095 CDS Human protein_coding chr17:26518103 chr17:26518101 stopgain 1.000 1 19 hm1A_associated_SNPs_12486 0 0 0 1 26518090 26518111 mRNA hsa-miR-487b NLK miRanda miRanda
2192 chr6 43192269 43192269 1 + T G rs6458328 43192268 + 43192248 43192288 41 CCCCTGTCATAGGGAGGGGGATTCCCAGCGTCTGTAGTGCT CCCCTGTCATAGGGAGGGGGAGTCCCAGCGTCTGTAGTGCT < 41bp 0.803019406341121 0.583080189191686 0.17283699 0.18317828 prediction 0.439878434298868 Functional Loss - CUL9 ENSG00000112659 UTR3 Human protein_coding chr6:43192268 chr6:43192269 . . 0 22 hm1A_associated_SNPs_12505 0 0 0 1 43192269 43192292 mRNA hsa-miR-7 CUL9 miRanda miRanda
2192 chr6 125404057 125404057 1 + C T COAD 125404059 + 125404039 125404079 41 TGTAAAAAACAGAGAAAACGATCACGGACAGGTATGCACTG TGTAAAAAACAGAGAAAATGATCACGGACAGGTATGCACTG < 41bp 0.7198055906132 0.395879285001998 0.18922698 0.09895912 prediction 0.439611181226401 Functional Loss - RNF217 ENSG00000146373 CDS Human protein_coding chr6:125404059 chr6:125404057 stopgain 0.984 0 19 hm1A_associated_SNPs_12542 0 0 1 1 125404053 125404074 mRNA hsa-miR-875-5p RNF217 miRanda miRanda
2192 chrX 115569048 115569048 1 + C T SKCM 115569050 + 115569030 115569070 41 AAAAAATCGGATTATCTTCTATCTATGATTGGATACGCAGT AAAAAATCGGATTATCTTTTATCTATGATTGGATACGCAGT < 41bp 0.719486872044821 0.436284418724521 0.17466116 0.17911527 prediction 0.438973744089643 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115569050 chrX:115569048 synonymous SNV . 0 19 hm1A_associated_SNPs_12626 0 0 0 2 115569034 115569058 mRNA hsa-miR-376a SLC6A14 miRanda miRanda
2192 chrX 115569048 115569048 1 + C T SKCM 115569050 + 115569030 115569070 41 AAAAAATCGGATTATCTTCTATCTATGATTGGATACGCAGT AAAAAATCGGATTATCTTTTATCTATGATTGGATACGCAGT < 41bp 0.719486872044821 0.436284418724521 0.17466116 0.17911527 prediction 0.438973744089643 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115569050 chrX:115569048 synonymous SNV . 0 19 hm1A_associated_SNPs_12626 0 0 0 2 115569032 115569058 mRNA hsa-miR-376b SLC6A14 miRanda miRanda
2192 chr16 58550533 58550533 1 + C T LUSC 58550535 + 58550515 58550555 41 AGCCTCAGGGTTCGCTCCCTAGAACTCTACCACCAGCTGGT AGCCTCAGGGTTCGCTCCTTAGAACTCTACCACCAGCTGGT < 41bp 0.81176478751124 0.592403697580973 0.44254842 0.41540164 prediction 0.438722179860535 Functional Loss - SETD6 ENSG00000103037 CDS Human protein_coding chr16:58550535 chr16:58550533 synonymous SNV . 0 19 hm1A_associated_SNPs_12659 0 0 1 1 58550529 58550552 mRNA hsa-miR-138 SETD6 miRanda miRanda
2192 chr1 54683899 54683899 1 + C G CESC 54683901 + 54683881 54683921 41 TTCAGAAAGTTTTTAGCTCTATATTTGCATGGTGCTGCGTG TTCAGAAAGTTTTTAGCTGTATATTTGCATGGTGCTGCGTG < 41bp 0.838670531419582 0.619451846852207 0.23558089 0.20726362 prediction 0.43843736913475 Functional Loss - MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54683901 chr1:54683899 nonsynonymous SNV 0.883 2 19 hm1A_associated_SNPs_12699 0 0 1 3 54683895 54683917 mRNA hsa-miR-29a MRPL37 miRanda miRanda
2192 chr1 54683899 54683899 1 + C G CESC 54683901 + 54683881 54683921 41 TTCAGAAAGTTTTTAGCTCTATATTTGCATGGTGCTGCGTG TTCAGAAAGTTTTTAGCTGTATATTTGCATGGTGCTGCGTG < 41bp 0.838670531419582 0.619451846852207 0.23558089 0.20726362 prediction 0.43843736913475 Functional Loss - MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54683901 chr1:54683899 nonsynonymous SNV 0.883 2 19 hm1A_associated_SNPs_12699 0 0 1 3 54683895 54683917 mRNA hsa-miR-29b MRPL37 miRanda miRanda
2192 chr1 54683899 54683899 1 + C G CESC 54683901 + 54683881 54683921 41 TTCAGAAAGTTTTTAGCTCTATATTTGCATGGTGCTGCGTG TTCAGAAAGTTTTTAGCTGTATATTTGCATGGTGCTGCGTG < 41bp 0.838670531419582 0.619451846852207 0.23558089 0.20726362 prediction 0.43843736913475 Functional Loss - MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54683901 chr1:54683899 nonsynonymous SNV 0.883 2 19 hm1A_associated_SNPs_12699 0 0 1 3 54683895 54683917 mRNA hsa-miR-29c MRPL37 miRanda miRanda
2192 chr11 134130976 134130976 1 + C T UCEC 134130978 + 134130958 134130998 41 AACACGAGCTGTGATCTTCGAAGACTGTGCTGTCCCTGTGG AACACGAGCTGTGATCTTTGAAGACTGTGCTGTCCCTGTGG < 41bp 0.836886377586799 0.617812444859955 0.25125366 0.2093623 prediction 0.438147865453688 Functional Loss - ACAD8 ENSG00000151498 CDS Human protein_coding chr11:134130978 chr11:134130976 synonymous SNV . 0 19 hm1A_associated_SNPs_12739 0 0 1 1 134130975 134131003 mRNA hsa-miR-96 ACAD8 miRanda miRanda
2192 chr10 106974307 106974307 1 + C T PRAD 106974309 + 106974289 106974329 41 GGGGCCTCCATGTGGTGACGACCGATGGGCGGCTGGTGGCA GGGGCCTCCATGTGGTGATGACCGATGGGCGGCTGGTGGCA < 41bp 0.718806054907674 0.49045645859771 0.65492296 0.46282795 prediction 0.437612109815348 Functional Loss - SORCS3 ENSG00000156395 CDS Human protein_coding chr10:106974309 chr10:106974307 nonsynonymous SNV 0.993 3 19 hm1A_associated_SNPs_12794 0 0 0 1 106974286 106974307 mRNA hsa-miR-197 SORCS3 miRanda miRanda
2192 chr7 64639837 64639837 1 + C T rs573243020 64639839 + 64639819 64639859 41 TCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGT TCTAACAACATCACCCTCTGAGAAGATCAGCTTGACACTGT < 41bp 0.734746741229462 0.516172474104015 0.20571423 0.14397165 prediction 0.437148534250894 Functional Loss - INTS4P1 ENSG00000164669 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64639839 chr7:64639837 . . 0 19 hm1A_associated_SNPs_12842 0 0 0 1 64639833 64639858 mRNA hsa-miR-301b INTS4L1 miRanda miRanda
2192 chr6 112382382 112382382 1 + C T rs112665393 112382384 + 112382364 112382404 41 ATGCTGTAAAATCTGTGCCAAGCAACCAGGGGAAATCTGCA ATGCTGTAAAATCTGTGCTAAGCAACCAGGGGAAATCTGCA < 41bp 0.821012895864491 0.602482859374637 0.20761752 0.22077203 prediction 0.437060072979709 Functional Loss - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112382384 chr6:112382382 synonymous SNV . 0 19 hm1A_associated_SNPs_12853 1 0 0 2 112382367 112382385 mRNA hsa-miR-96 WISP3 miRanda miRanda
2192 chr6 112382382 112382382 1 + C T rs112665393 112382384 + 112382364 112382404 41 ATGCTGTAAAATCTGTGCCAAGCAACCAGGGGAAATCTGCA ATGCTGTAAAATCTGTGCTAAGCAACCAGGGGAAATCTGCA < 41bp 0.821012895864491 0.602482859374637 0.20761752 0.22077203 prediction 0.437060072979709 Functional Loss - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112382384 chr6:112382382 synonymous SNV . 0 19 hm1A_associated_SNPs_12853 1 0 0 2 112382364 112382385 mRNA hsa-miR-1271 WISP3 miRanda miRanda
2192 chr14 54884583 54884583 1 + C A TGCT 54884585 + 54884565 54884605 41 GTAGCTGCTTGTCTCCTACTATACCTGTCTGACACAATATC GTAGCTGCTTGTCTCCTAATATACCTGTCTGACACAATATC < 41bp 0.718494309432456 0.438148700580411 0.10179868 0.08974001 prediction 0.436988618864912 Functional Loss - CDKN3 ENSG00000100526 CDS Human protein_coding chr14:54884585 chr14:54884583 nonsynonymous SNV 0.729 4 19 hm1A_associated_SNPs_12863 0 0 1 2 54884572 54884593 mRNA hsa-miR-144 CDKN3 miRanda miRanda
2192 chr14 54884583 54884583 1 + C A TGCT 54884585 + 54884565 54884605 41 GTAGCTGCTTGTCTCCTACTATACCTGTCTGACACAATATC GTAGCTGCTTGTCTCCTAATATACCTGTCTGACACAATATC < 41bp 0.718494309432456 0.438148700580411 0.10179868 0.08974001 prediction 0.436988618864912 Functional Loss - CDKN3 ENSG00000100526 CDS Human protein_coding chr14:54884585 chr14:54884583 nonsynonymous SNV 0.729 4 19 hm1A_associated_SNPs_12863 0 0 1 2 54884583 54884602 mRNA hsa-miR-599 CDKN3 miRanda miRanda
2192 chr17 72741179 72741179 1 + C A LUAD 72741181 + 72741161 72741201 41 CTTCCTGGAGACCAGCGCCAAGACTGGCATGAATGTGGAGT CTTCCTGGAGACCAGCGCAAAGACTGGCATGAATGTGGAGT < 41bp 0.816047840246566 0.597553806455764 0.34085625 0.31734407 prediction 0.436988067581603 Functional Loss - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72741181 chr17:72741179 synonymous SNV . 0 19 hm1A_associated_SNPs_12864 0 0 0 4 72741173 72741197 mRNA hsa-miR-181a RAB37 miRanda miRanda
2192 chr17 72741179 72741179 1 + C A LUAD 72741181 + 72741161 72741201 41 CTTCCTGGAGACCAGCGCCAAGACTGGCATGAATGTGGAGT CTTCCTGGAGACCAGCGCAAAGACTGGCATGAATGTGGAGT < 41bp 0.816047840246566 0.597553806455764 0.34085625 0.31734407 prediction 0.436988067581603 Functional Loss - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72741181 chr17:72741179 synonymous SNV . 0 19 hm1A_associated_SNPs_12864 0 0 0 4 72741176 72741197 mRNA hsa-miR-181b RAB37 miRanda miRanda
2192 chr17 72741179 72741179 1 + C A LUAD 72741181 + 72741161 72741201 41 CTTCCTGGAGACCAGCGCCAAGACTGGCATGAATGTGGAGT CTTCCTGGAGACCAGCGCAAAGACTGGCATGAATGTGGAGT < 41bp 0.816047840246566 0.597553806455764 0.34085625 0.31734407 prediction 0.436988067581603 Functional Loss - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72741181 chr17:72741179 synonymous SNV . 0 19 hm1A_associated_SNPs_12864 0 0 0 4 72741173 72741197 mRNA hsa-miR-181c RAB37 miRanda miRanda
2192 chr17 72741179 72741179 1 + C A LUAD 72741181 + 72741161 72741201 41 CTTCCTGGAGACCAGCGCCAAGACTGGCATGAATGTGGAGT CTTCCTGGAGACCAGCGCAAAGACTGGCATGAATGTGGAGT < 41bp 0.816047840246566 0.597553806455764 0.34085625 0.31734407 prediction 0.436988067581603 Functional Loss - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72741181 chr17:72741179 synonymous SNV . 0 19 hm1A_associated_SNPs_12864 0 0 0 4 72741170 72741197 mRNA hsa-miR-181d RAB37 miRanda miRanda
2192 chr8 42263157 42263157 1 + T C rs6773 42263156 + 42263136 42263176 41 GCGAATCCCTCCTGAGGGAGATGCTTGAAGGCATGCCTGGA GCGAATCCCTCCTGAGGGAGACGCTTGAAGGCATGCCTGGA < 41bp 0.725868484793311 0.507381618965943 0.09909707 0.11501628 prediction 0.436973731654736 Functional Loss - VDAC3 ENSG00000078668 UTR3 Human protein_coding chr8:42263156 chr8:42263157 . . 0 22 hm1A_associated_SNPs_12867 0 0 1 1 42263134 42263160 mRNA hsa-miR-324-5p VDAC3 miRanda miRanda
2192 chr12 112579928 112579928 1 + C T SKCM 112579930 + 112579910 112579950 41 CAGGAAAGGAATAGAGGCCAACAGCCCCCCAAAGAGGGTGG CAGGAAAGGAATAGAGGCTAACAGCCCCCCAAAGAGGGTGG < 41bp 0.808776752136897 0.590313753649921 0.41332638 0.24532717 prediction 0.436925996973953 Functional Loss - TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112579930 chr12:112579928 stopgain 0.092 0 19 hm1A_associated_SNPs_12873 0 0 1 1 112579910 112579930 mRNA hsa-miR-328 TRAFD1 miRanda miRanda
2192 chr22 35726441 35726441 1 + C T LGG 35726443 + 35726423 35726463 41 GCTGCTCATCGTCAATGACAATCTCAACAATGTGTTCCTGC GCTGCTCATCGTCAATGATAATCTCAACAATGTGTTCCTGC < 41bp 0.850771900733312 0.632318011472271 0.31728727 0.2973128 prediction 0.436907778522081 Functional Loss - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35726443 chr22:35726441 synonymous SNV . 0 19 hm1A_associated_SNPs_12875 0 0 1 2 35726426 35726446 mRNA hsa-miR-219-5p TOM1 miRanda miRanda
2192 chr22 35726441 35726441 1 + C T LGG 35726443 + 35726423 35726463 41 GCTGCTCATCGTCAATGACAATCTCAACAATGTGTTCCTGC GCTGCTCATCGTCAATGATAATCTCAACAATGTGTTCCTGC < 41bp 0.850771900733312 0.632318011472271 0.31728727 0.2973128 prediction 0.436907778522081 Functional Loss - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35726443 chr22:35726441 synonymous SNV . 0 19 hm1A_associated_SNPs_12875 0 0 1 2 35726439 35726463 mRNA hsa-miR-873 TOM1 miRanda miRanda
2192 chr14 60494679 60494679 1 + C A rs368587449 60494681 + 60494661 60494701 41 GTGGACCATAACCGCATCCGATCATTTAATGACAGTGCTTT GTGGACCATAACCGCATCAGATCATTTAATGACAGTGCTTT < 41bp 0.766969244051037 0.548663446096152 0.2280182 0.096830755 prediction 0.436611595909769 Functional Loss - LRRC9 ENSG00000131951 CDS Human protein_coding chr14:60494681 chr14:60494679 synonymous SNV . 0 19 hm1A_associated_SNPs_12913 0 0 0 1 60494677 60494697 mRNA hsa-miR-217 LRRC9 miRanda miRanda
2192 chr20 2688657 2688657 1 + T C CESC 2688656 + 2688636 2688676 41 GAGTGCTGCTCACCCATGAGATCATGTGCAGGTGAGATGGC GAGTGCTGCTCACCCATGAGACCATGTGCAGGTGAGATGGC < 41bp 0.717944960679192 0.485504620640193 0.15101361 0.2167477 prediction 0.435889921358384 Functional Loss - EBF4 ENSG00000088881 CDS Human protein_coding chr20:2688656 chr20:2688657 nonsynonymous SNV 1.000 2 22 hm1A_associated_SNPs_13005 0 0 0 1 2688644 2688666 mRNA hsa-miR-221 EBF4 miRanda miRanda
2192 chr10 75671973 75671973 1 + C T UCEC 75671975 + 75671955 75671995 41 CACCTTTGTTCTCTCCAGCGAACTGTGACTGTCTAAATGGA CACCTTTGTTCTCTCCAGTGAACTGTGACTGTCTAAATGGA < 41bp 0.717806866884993 0.457032802207142 0.24416965 0.14709559 prediction 0.435613733769985 Functional Loss - C10orf55;PLAU ENSG00000122861;ENSG00000222047 CDS Human other chr10:75671975 chr10:75671973 nonsynonymous SNV 0.308 2 19 hm1A_associated_SNPs_13037 0 0 0 2 75671973 75671983 mRNA hsa-miR-27a PLAU miRanda miRanda
2192 chr10 75671973 75671973 1 + C T UCEC 75671975 + 75671955 75671995 41 CACCTTTGTTCTCTCCAGCGAACTGTGACTGTCTAAATGGA CACCTTTGTTCTCTCCAGTGAACTGTGACTGTCTAAATGGA < 41bp 0.717806866884993 0.457032802207142 0.24416965 0.14709559 prediction 0.435613733769985 Functional Loss - C10orf55;PLAU ENSG00000122861;ENSG00000222047 CDS Human other chr10:75671975 chr10:75671973 nonsynonymous SNV 0.308 2 19 hm1A_associated_SNPs_13037 0 0 0 2 75671973 75671983 mRNA hsa-miR-27b PLAU miRanda miRanda
2192 chr8 38704242 38704242 1 + C T COAD 38704244 + 38704224 38704264 41 GAAGAGATTGCTCAGGTTCGAACAAAAGCAAAGGCTGAGAG GAAGAGATTGCTCAGGTTTGAACAAAAGCAAAGGCTGAGAG < 41bp 0.717790592449334 0.472621814013163 0.34821302 0.16239464 prediction 0.435581184898668 Functional Loss - TACC1 ENSG00000147526 CDS Human protein_coding chr8:38704244 chr8:38704242 stopgain 0.986 1 19 hm1A_associated_SNPs_13039 0 0 1 1 38704228 38704249 mRNA hsa-miR-375 TACC1 miRanda miRanda
2192 chr5 134232072 134232072 1 + C T BLCA 134232074 + 134232054 134232094 41 AGATTTAATCATACAGATCGAACACTGGAAACACTGAAAAT AGATTTAATCATACAGATTGAACACTGGAAACACTGAAAAT < 41bp 0.717578054392063 0.416353814146179 0.08427626 0.022242397 prediction 0.435156108784125 Functional Loss - TXNDC15 ENSG00000113621 CDS Human protein_coding chr5:134232074 chr5:134232072 stopgain 0.985 1 19 hm1A_associated_SNPs_13084 0 0 1 3 134232060 134232082 mRNA hsa-miR-199a-5p TXNDC15 miRanda miRanda
2192 chr5 134232072 134232072 1 + C T BLCA 134232074 + 134232054 134232094 41 AGATTTAATCATACAGATCGAACACTGGAAACACTGAAAAT AGATTTAATCATACAGATTGAACACTGGAAACACTGAAAAT < 41bp 0.717578054392063 0.416353814146179 0.08427626 0.022242397 prediction 0.435156108784125 Functional Loss - TXNDC15 ENSG00000113621 CDS Human protein_coding chr5:134232074 chr5:134232072 stopgain 0.985 1 19 hm1A_associated_SNPs_13084 0 0 1 3 134232060 134232082 mRNA hsa-miR-199b-5p TXNDC15 miRanda miRanda
2192 chr5 134232072 134232072 1 + C T BLCA 134232074 + 134232054 134232094 41 AGATTTAATCATACAGATCGAACACTGGAAACACTGAAAAT AGATTTAATCATACAGATTGAACACTGGAAACACTGAAAAT < 41bp 0.717578054392063 0.416353814146179 0.08427626 0.022242397 prediction 0.435156108784125 Functional Loss - TXNDC15 ENSG00000113621 CDS Human protein_coding chr5:134232074 chr5:134232072 stopgain 0.985 1 19 hm1A_associated_SNPs_13084 0 0 1 3 134232061 134232083 mRNA hsa-miR-145 TXNDC15 miRanda miRanda
2192 chr15 20489417 20489417 1 + C T LUAD 20489419 + 20489399 20489439 41 TTCTCTGAGCACAGGACTCAAGTGTCACTGAAGGACCAGAT TTCTCTGAGCACAGGACTTAAGTGTCACTGAAGGACCAGAT < 41bp 0.789699906540926 0.572128336533215 0.15865982 0.13752761 prediction 0.435143140015422 Functional Loss - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20489419 chr15:20489417 . . 0 19 hm1A_associated_SNPs_13085 0 0 0 1 20489408 20489429 mRNA hsa-miR-148a LOC646096 miRanda miRanda
2192 chr5 129037190 129037190 1 + C T SKCM 129037192 + 129037172 129037212 41 GGAACACTGATTAGAGCCCGAGAGAGGGACTGCATTGGGCC GGAACACTGATTAGAGCCTGAGAGAGGGACTGCATTGGGCC < 41bp 0.717446158796402 0.464437508551698 0.42371634 0.26411587 prediction 0.434892317592803 Functional Loss - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:129037192 chr5:129037190 stopgain 0.951 1 19 hm1A_associated_SNPs_13116 0 0 0 1 129037179 129037205 mRNA hsa-miR-324-5p ADAMTS19 miRanda miRanda
2192 chr15 75190031 75190031 1 + C T UCEC 75190033 + 75190013 75190053 41 CACTGAAGCTTACTGAGCCGAAGGACCTGCTGATATTCCGT CACTGAAGCTTACTGAGCTGAAGGACCTGCTGATATTCCGT < 41bp 0.717431497549241 0.419545238791116 0.2534337 0.16186243 prediction 0.434862995098482 Functional Loss - MPI ENSG00000178802 CDS Human protein_coding chr15:75190033 chr15:75190031 nonsynonymous SNV 0.369 1 19 hm1A_associated_SNPs_13119 0 0 1 2 75190012 75190032 mRNA hsa-miR-24 MPI miRanda miRanda
2192 chr15 75190031 75190031 1 + C T UCEC 75190033 + 75190013 75190053 41 CACTGAAGCTTACTGAGCCGAAGGACCTGCTGATATTCCGT CACTGAAGCTTACTGAGCTGAAGGACCTGCTGATATTCCGT < 41bp 0.717431497549241 0.419545238791116 0.2534337 0.16186243 prediction 0.434862995098482 Functional Loss - MPI ENSG00000178802 CDS Human protein_coding chr15:75190033 chr15:75190031 nonsynonymous SNV 0.369 1 19 hm1A_associated_SNPs_13119 0 0 1 2 75190024 75190045 mRNA hsa-miR-214 MPI miRanda miRanda
2192 chr12 122670803 122670803 1 + C A GBM 122670805 + 122670785 122670825 41 TTGGTACTGAGCGCCAATCGAATCAAGGAGGTGGATGCCAC TTGGTACTGAGCGCCAATAGAATCAAGGAGGTGGATGCCAC < 41bp 0.784581355733326 0.567366020713814 0.55841255 0.4640971 prediction 0.434430670039025 Functional Loss - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122670805 chr12:122670803 synonymous SNV . 0 19 hm1A_associated_SNPs_13168 0 0 0 1 122670789 122670811 mRNA hsa-miR-375 LRRC43 miRanda miRanda
2192 chr1 220957309 220957309 1 + C T rs143610936 220957311 + 220957291 220957331 41 TCTTAACAACAGCAGCAACGATACATCAGCAAATCCTTATT TCTTAACAACAGCAGCAATGATACATCAGCAAATCCTTATT < 41bp 0.717188238812165 0.431804685819614 0.17006919 0.051954597 prediction 0.43437647762433 Functional Loss - MARC2 ENSG00000117791 UTR3 Human protein_coding chr1:220957311 chr1:220957309 . . 0 19 hm1A_associated_SNPs_13173 0 0 1 1 220957302 220957324 mRNA hsa-miR-450a MOSC2 miRanda miRanda
2192 chr9 71869251 71869251 1 + C T UCEC 71869253 + 71869233 71869273 41 ACACTCCAAGCGCGGTTACTATGGCCAGTCTGCCCGATACC ACACTCCAAGCGCGGTTATTATGGCCAGTCTGCCCGATACC < 41bp 0.717017254256939 0.39992581625885 0.3841896 0.36897567 prediction 0.434034508513877 Functional Loss - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71869253 chr9:71869251 synonymous SNV . 0 19 hm1A_associated_SNPs_13220 0 0 1 2 71869240 71869262 mRNA hsa-miR-193a-3p TJP2 miRanda miRanda
2192 chr9 71869251 71869251 1 + C T UCEC 71869253 + 71869233 71869273 41 ACACTCCAAGCGCGGTTACTATGGCCAGTCTGCCCGATACC ACACTCCAAGCGCGGTTATTATGGCCAGTCTGCCCGATACC < 41bp 0.717017254256939 0.39992581625885 0.3841896 0.36897567 prediction 0.434034508513877 Functional Loss - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71869253 chr9:71869251 synonymous SNV . 0 19 hm1A_associated_SNPs_13220 0 0 1 2 71869241 71869262 mRNA hsa-miR-193b TJP2 miRanda miRanda
2192 chr2 217285159 217285159 1 + C T STAD 217285161 + 217285141 217285181 41 CTTTCATTTGTCAAAGGGCGATGCATGCTCATCTCCAGGGC CTTTCATTTGTCAAAGGGTGATGCATGCTCATCTCCAGGGC < 41bp 0.871349178445146 0.654376586645065 0.4309165 0.13839045 prediction 0.433945183600161 Functional Loss - SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217285161 chr2:217285159 stopgain 0.945 0 19 hm1A_associated_SNPs_13233 0 0 0 1 217285142 217285165 mRNA hsa-miR-324-5p SMARCAL1 miRanda miRanda
2192 chr7 99160005 99160005 1 + C T UCEC 99160007 + 99159987 99160027 41 TCAGGAGTTTGTGACATTCGAGGATGTGGCTGTGCACCTTA TCAGGAGTTTGTGACATTTGAGGATGTGGCTGTGCACCTTA < 41bp 0.774528512887893 0.557581462211568 0.07783347 0.0764083 prediction 0.43389410135265 Functional Loss - ZNF655 ENSG00000197343 CDS Human protein_coding chr7:99160007 chr7:99160005 stopgain 1.000 0 19 hm1A_associated_SNPs_13240 0 0 1 1 99160005 99160027 mRNA hsa-miR-18b ZNF655 miRanda miRanda
2192 chr9 32425898 32425898 1 + T C rs34319839 32425897 + 32425877 32425917 41 TGACCATAAGACCTTTATCTATGATAACACTGAATTCACCC TGACCATAAGACCTTTATCTACGATAACACTGAATTCACCC < 41bp 0.716877654294241 0.496880163354398 0.10989088 0.21177253 prediction 0.433755308588482 Functional Loss - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32425897 chr9:32425898 synonymous SNV . 0 22 hm1A_associated_SNPs_13255 0 0 0 2 32425881 32425901 mRNA hsa-miR-376a ACO1 miRanda miRanda
2192 chr9 32425898 32425898 1 + T C rs34319839 32425897 + 32425877 32425917 41 TGACCATAAGACCTTTATCTATGATAACACTGAATTCACCC TGACCATAAGACCTTTATCTACGATAACACTGAATTCACCC < 41bp 0.716877654294241 0.496880163354398 0.10989088 0.21177253 prediction 0.433755308588482 Functional Loss - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32425897 chr9:32425898 synonymous SNV . 0 22 hm1A_associated_SNPs_13255 0 0 0 2 32425879 32425901 mRNA hsa-miR-376b ACO1 miRanda miRanda
2192 chr13 37014167 37014167 1 + C T UCEC 37014169 + 37014149 37014189 41 CGAGTTTGTCTATATCACCGATGATACATACACAAAACGAC CGAGTTTGTCTATATCACTGATGATACATACACAAAACGAC < 41bp 0.716334032724829 0.405063850641967 0.11827642 0.031229526 prediction 0.432668065449658 Functional Loss - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37014169 chr13:37014167 synonymous SNV . 0 19 hm1A_associated_SNPs_13384 0 0 0 1 37014164 37014184 mRNA hsa-miR-599 CCNA1 miRanda miRanda
2192 chr1 22929517 22929517 1 + T C rs41266043 22929516 + 22929496 22929536 41 TTTTTTCCTCACTCCTGACAATGCAAAAATGGTCTTCAAAG TTTTTTCCTCACTCCTGACAACGCAAAAATGGTCTTCAAAG < 41bp 0.71626230118472 0.477498905287129 0.052446008 0.11006856 prediction 0.43252460236944 Functional Loss - EPHA8 ENSG00000070886 UTR3 Human protein_coding chr1:22929516 chr1:22929517 . . 0 22 hm1A_associated_SNPs_13399 0 0 0 3 22929500 22929521 mRNA hsa-miR-33a EPHA8 miRanda miRanda
2192 chr1 22929517 22929517 1 + T C rs41266043 22929516 + 22929496 22929536 41 TTTTTTCCTCACTCCTGACAATGCAAAAATGGTCTTCAAAG TTTTTTCCTCACTCCTGACAACGCAAAAATGGTCTTCAAAG < 41bp 0.71626230118472 0.477498905287129 0.052446008 0.11006856 prediction 0.43252460236944 Functional Loss - EPHA8 ENSG00000070886 UTR3 Human protein_coding chr1:22929516 chr1:22929517 . . 0 22 hm1A_associated_SNPs_13399 0 0 0 3 22929503 22929525 mRNA hsa-miR-129-5p EPHA8 miRanda miRanda
2192 chr1 22929517 22929517 1 + T C rs41266043 22929516 + 22929496 22929536 41 TTTTTTCCTCACTCCTGACAATGCAAAAATGGTCTTCAAAG TTTTTTCCTCACTCCTGACAACGCAAAAATGGTCTTCAAAG < 41bp 0.71626230118472 0.477498905287129 0.052446008 0.11006856 prediction 0.43252460236944 Functional Loss - EPHA8 ENSG00000070886 UTR3 Human protein_coding chr1:22929516 chr1:22929517 . . 0 22 hm1A_associated_SNPs_13399 0 0 0 3 22929502 22929521 mRNA hsa-miR-33b EPHA8 miRanda miRanda
2192 chr3 136708404 136708404 1 + C T UCEC 136708406 + 136708386 136708426 41 GAGGAGGGAGCCTGGTGCCGAGGTGAGACTCCAGCCTTGGC GAGGAGGGAGCCTGGTGCTGAGGTGAGACTCCAGCCTTGGC < 41bp 0.716029998695251 0.479235639360656 0.323117 0.2717834 prediction 0.432059997390502 Functional Loss - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136708406 chr3:136708404 synonymous SNV . 0 19 hm1A_associated_SNPs_13453 0 0 0 1 136708394 136708407 mRNA hsa-miR-328 IL20RB miRanda miRanda
2192 chr14 58690527 58690527 1 + C T UCEC 58690529 + 58690509 58690549 41 CCCACCCCCAAATGTTGACTATCCATTAGATGGAGAGAAGA CCCACCCCCAAATGTTGATTATCCATTAGATGGAGAGAAGA < 41bp 0.716024640571213 0.41397933625174 0.13838804 0.13367748 prediction 0.432049281142425 Functional Loss - ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58690529 chr14:58690527 synonymous SNV . 0 19 hm1A_associated_SNPs_13454 0 0 0 1 58690507 58690528 mRNA hsa-miR-505 ACTR10 miRanda miRanda
2192 chr6 50740456 50740456 1 + C T LIHC 50740458 + 50740438 50740478 41 ACTACTTGGAAAAACACACTACTCACAAGAACGGCGGAGCG ACTACTTGGAAAAACACATTACTCACAAGAACGGCGGAGCG < 41bp 0.715886003749691 0.441366966701302 0.2163826 0.17375371 prediction 0.431772007499382 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50740458 chr6:50740456 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_13478 0 0 0 2 50740436 50740458 mRNA hsa-miR-140-5p TFAP2D miRanda miRanda
2192 chr6 50740456 50740456 1 + C T LIHC 50740458 + 50740438 50740478 41 ACTACTTGGAAAAACACACTACTCACAAGAACGGCGGAGCG ACTACTTGGAAAAACACATTACTCACAAGAACGGCGGAGCG < 41bp 0.715886003749691 0.441366966701302 0.2163826 0.17375371 prediction 0.431772007499382 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50740458 chr6:50740456 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_13478 0 0 0 2 50740431 50740460 mRNA hsa-miR-142-3p TFAP2D miRanda miRanda
2192 chr6 41318486 41318486 1 + C G CESC 41318488 + 41318468 41318508 41 AAAGCCACCTGCCACCTTCAACAGGTCACGGACCTTCCCTG AAAGCCACCTGCCACCTTGAACAGGTCACGGACCTTCCCTG < 41bp 0.762845293062972 0.547046928192676 0.2107676 0.19946668 prediction 0.43159672974059 Functional Loss - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41318488 chr6:41318486 nonsynonymous SNV 0.003 1 19 hm1A_associated_SNPs_13500 0 0 0 1 41318471 41318491 mRNA hsa-miR-653 NCR2 miRanda miRanda
2192 chr9 1056774 1056774 1 + C G rs142308383 1056776 + 1056756 1056796 41 AGCAGGACATGATGCCATCGAAATTGGAAGGTTCCCTGGTG AGCAGGACATGATGCCATGGAAATTGGAAGGTTCCCTGGTG < 41bp 0.751112005241893 0.535359581271503 0.2097044 0.16772586 prediction 0.431504847940779 Functional Loss - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056776 chr9:1056774 nonsynonymous SNV 0.419 2 19 hm1A_associated_SNPs_13515 0 0 0 1 1056773 1056794 mRNA hsa-miR-873 DMRT2 miRanda miRanda
2192 chr10 4872929 4872929 1 + C T UCEC 4872931 + 4872911 4872951 41 CGCAGGGTACCGGCACTTCGACTGTGCTTACTTTTACCACA CGCAGGGTACCGGCACTTTGACTGTGCTTACTTTTACCACA < 41bp 0.828696381102983 0.613009942799774 0.48964036 0.2500854 prediction 0.431372876606417 Functional Loss - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4872931 chr10:4872929 synonymous SNV . 0 19 hm1A_associated_SNPs_13530 0 0 1 1 4872912 4872937 mRNA hsa-miR-128 AKR1E2 miRanda miRanda
2192 chr1 156180190 156180190 1 + C T PRAD 156180192 + 156180172 156180212 41 CTCAAGAAACTCAGCCTCCGACCTGAGCTGGTGGACTCGAG CTCAAGAAACTCAGCCTCTGACCTGAGCTGGTGGACTCGAG < 41bp 0.715624409859503 0.413065247639603 0.3932222 0.18986568 prediction 0.431248819719006 Functional Loss - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156180192 chr1:156180190 stopgain 0.999 1 19 hm1A_associated_SNPs_13546 0 0 1 1 156180169 156180190 mRNA hsa-miR-485-5p SLC25A44 miRanda miRanda
2192 chr1 205435909 205435909 1 + C A rs189678430 205435911 + 205435891 205435931 41 TCCTGGCCAGTTGGAGAACGATCTCTGCCTTTCAGTTCTGA TCCTGGCCAGTTGGAGAAAGATCTCTGCCTTTCAGTTCTGA < 41bp 0.715361919468295 0.479940423834797 0.54682 0.19680622 prediction 0.430723838936591 Functional Loss - BLACAT1;CDK18 ENSG00000224717 ncRNA_exonic Human lincRNA chr1:205435911 chr1:205435909 . . 0 19 hm1A_associated_SNPs_13608 0 0 0 1 205435905 205435925 mRNA hsa-miR-488 LOC284577 miRanda miRanda
2192 chr15 28878870 28878870 1 + C T rs528801615 28878872 + 28878852 28878892 41 CACACCGCTGTCTCCTGTCGAGATTGAATGTGCCAGTAAGA CACACCGCTGTCTCCTGTTGAGATTGAATGTGCCAGTAAGA < 41bp 0.738201741162779 0.522927840087443 0.09511238 0.07036516 prediction 0.430547802150672 Functional Loss - HERC2P11;HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28878872 chr15:28878870 . . 0 19 hm1A_associated_SNPs_13626 0 0 0 6 28878867 28878886 mRNA hsa-miR-96 HERC2P2 miRanda miRanda
2192 chr15 28878870 28878870 1 + C T rs528801615 28878872 + 28878852 28878892 41 CACACCGCTGTCTCCTGTCGAGATTGAATGTGCCAGTAAGA CACACCGCTGTCTCCTGTTGAGATTGAATGTGCCAGTAAGA < 41bp 0.738201741162779 0.522927840087443 0.09511238 0.07036516 prediction 0.430547802150672 Functional Loss - HERC2P11;HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28878872 chr15:28878870 . . 0 19 hm1A_associated_SNPs_13626 0 0 0 6 28878860 28878883 mRNA hsa-miR-181a HERC2P2 miRanda miRanda
2192 chr15 28878870 28878870 1 + C T rs528801615 28878872 + 28878852 28878892 41 CACACCGCTGTCTCCTGTCGAGATTGAATGTGCCAGTAAGA CACACCGCTGTCTCCTGTTGAGATTGAATGTGCCAGTAAGA < 41bp 0.738201741162779 0.522927840087443 0.09511238 0.07036516 prediction 0.430547802150672 Functional Loss - HERC2P11;HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28878872 chr15:28878870 . . 0 19 hm1A_associated_SNPs_13626 0 0 0 6 28878861 28878883 mRNA hsa-miR-181b HERC2P2 miRanda miRanda
2192 chr15 28878870 28878870 1 + C T rs528801615 28878872 + 28878852 28878892 41 CACACCGCTGTCTCCTGTCGAGATTGAATGTGCCAGTAAGA CACACCGCTGTCTCCTGTTGAGATTGAATGTGCCAGTAAGA < 41bp 0.738201741162779 0.522927840087443 0.09511238 0.07036516 prediction 0.430547802150672 Functional Loss - HERC2P11;HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28878872 chr15:28878870 . . 0 19 hm1A_associated_SNPs_13626 0 0 0 6 28878860 28878883 mRNA hsa-miR-181c HERC2P2 miRanda miRanda
2192 chr15 28878870 28878870 1 + C T rs528801615 28878872 + 28878852 28878892 41 CACACCGCTGTCTCCTGTCGAGATTGAATGTGCCAGTAAGA CACACCGCTGTCTCCTGTTGAGATTGAATGTGCCAGTAAGA < 41bp 0.738201741162779 0.522927840087443 0.09511238 0.07036516 prediction 0.430547802150672 Functional Loss - HERC2P11;HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28878872 chr15:28878870 . . 0 19 hm1A_associated_SNPs_13626 0 0 0 6 28878861 28878883 mRNA hsa-miR-181d HERC2P2 miRanda miRanda
2192 chr15 28878870 28878870 1 + C T rs528801615 28878872 + 28878852 28878892 41 CACACCGCTGTCTCCTGTCGAGATTGAATGTGCCAGTAAGA CACACCGCTGTCTCCTGTTGAGATTGAATGTGCCAGTAAGA < 41bp 0.738201741162779 0.522927840087443 0.09511238 0.07036516 prediction 0.430547802150672 Functional Loss - HERC2P11;HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28878872 chr15:28878870 . . 0 19 hm1A_associated_SNPs_13626 0 0 0 6 28878868 28878886 mRNA hsa-miR-1271 HERC2P2 miRanda miRanda
2192 chr11 94801400 94801400 1 + C T rs533750831 94801402 + 94801382 94801422 41 AAGCTTTGCATCAGGTGGCAAAATTCATTCTATGTGCCGTT AAGCTTTGCATCAGGTGGTAAAATTCATTCTATGTGCCGTT < 41bp 0.715232654550596 0.467086434418632 0.07201737 0.06936386 prediction 0.430465309101192 Functional Loss - SRSF8 ENSG00000180771 ncRNA_exonic Human other chr11:94801402 chr11:94801400 . . 0 19 hm1A_associated_SNPs_13633 0 0 1 1 94801394 94801417 mRNA hsa-miR-376c SFRS2B miRanda miRanda
2192 chr4 147104096 147104096 1 + C A UCEC 147104098 + 147104078 147104118 41 GTCTTCGGAAGCAAACCCCTAGTGACTTCTTAAAGCAAATC GTCTTCGGAAGCAAACCCATAGTGACTTCTTAAAGCAAATC < 41bp 0.807291197210224 0.592173408335026 0.26600784 0.30512065 prediction 0.430235577750397 Functional Loss - LSM6 ENSG00000164167 CDS Human protein_coding chr4:147104098 chr4:147104096 nonsynonymous SNV 0.978 4 19 hm1A_associated_SNPs_13662 0 0 1 1 147104086 147104106 mRNA hsa-miR-224 LSM6 miRanda miRanda
2192 chr3 38012927 38012927 1 + C T PRAD 38012929 + 38012909 38012949 41 GAAGCGGCCACATGTGGACGAGTTCCTCCAGAGGATGGGGC GAAGCGGCCACATGTGGATGAGTTCCTCCAGAGGATGGGGC < 41bp 0.842203220837342 0.627087850621311 0.12814495 0.06306264 prediction 0.430230740432063 Functional Loss - CTDSPL ENSG00000144677 CDS Human protein_coding chr3:38012929 chr3:38012927 synonymous SNV . 0 19 hm1A_associated_SNPs_13663 0 0 1 1 38012927 38012954 mRNA hsa-miR-22 CTDSPL miRanda miRanda
2192 chr13 25157667 25157667 1 + C T UCEC 25157669 + 25157649 25157689 41 TATTATTTTGGAGAAAGGCGAACAGATAAAACGCACAGCAG TATTATTTTGGAGAAAGGTGAACAGATAAAACGCACAGCAG < 41bp 0.749479275553584 0.534392290209553 0.11618778 0.09337929 prediction 0.430173970688062 Functional Loss - TPTE2P6 ENSG00000205822;ENSG00000243008 ncRNA_exonic Human other chr13:25157669 chr13:25157667 . . 0 19 hm1A_associated_SNPs_13670 0 0 0 1 25157662 25157686 mRNA hsa-miR-210 LOC374491 miRanda miRanda
2192 chr13 42803268 42803268 1 + C T UCEC 42803270 + 42803250 42803290 41 AAAGTGGGTCATGTGAAGCGAATTCTCCAGGGAATTAAAGA AAAGTGGGTCATGTGAAGTGAATTCTCCAGGGAATTAAAGA < 41bp 0.823347985026527 0.608350698155904 0.1970205 0.16372967 prediction 0.429994573741247 Functional Loss - DGKH ENSG00000102780 CDS Human protein_coding chr13:42803270 chr13:42803268 stopgain 1.000 0 19 hm1A_associated_SNPs_13687 0 0 0 1 42803256 42803282 mRNA hsa-miR-125a-5p DGKH miRanda miRanda
2192 chr17 48633003 48633003 1 + C T UCEC 48633005 + 48632985 48633025 41 ACTGATCCCTGCGAATTACGAAAACTACTACATCCATGACT ACTGATCCCTGCGAATTATGAAAACTACTACATCCATGACT < 41bp 0.71495458998158 0.429416893144074 0.19912857 0.17230785 prediction 0.429909179963161 Functional Loss - SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48633005 chr17:48633003 stopgain 0.918 1 19 hm1A_associated_SNPs_13694 0 0 0 1 48632992 48633016 mRNA hsa-miR-142-3p SPATA20 miRanda miRanda
2192 chr17 31322436 31322436 1 + C T PAAD 31322438 + 31322418 31322458 41 CTTTCCCAGGGGTGCACTCAAGCCCTGTTTCTTCTCCTTCT CTTTCCCAGGGGTGCACTTAAGCCCTGTTTCTTCTCCTTCT < 41bp 0.784193439663781 0.569774605361629 0.13840625 0.11782622 prediction 0.428837668604304 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31322438 chr17:31322436 nonsynonymous SNV 0.010 1 19 hm1A_associated_SNPs_13811 0 0 0 1 31322427 31322444 mRNA hsa-miR-296-3p SPACA3 miRanda miRanda
2192 chr15 90286666 90286666 1 + C T rs55740646 90286668 + 90286648 90286688 41 AAAAGGAGGTTTCAGCCACGAGGCAGCTGCTCCCAGGACAC AAAAGGAGGTTTCAGCCATGAGGCAGCTGCTCCCAGGACAC < 41bp 0.76882585883581 0.554623232762688 0.2525859 0.27304667 prediction 0.428405252146244 Functional Loss - WDR93 ENSG00000140527 UTR3 Human protein_coding chr15:90286668 chr15:90286666 . . 0 19 hm1A_associated_SNPs_13837 0 0 0 1 90286654 90286676 mRNA hsa-miR-22 WDR93 miRanda miRanda
2192 chr4 995305 995305 1 + T C rs6815946 995304 + 995284 995324 41 GTGGAACTTCGAGACGTGGAATGAGCCAGACCACCACGACT GTGGAACTTCGAGACGTGGAACGAGCCAGACCACCACGACT < 41bp 0.713947037315332 0.496541997737835 0.6636101 0.7018565 prediction 0.427894074630664 Functional Loss - IDUA ENSG00000127415 CDS Human protein_coding chr4:995304 chr4:995305 synonymous SNV . 0 22 hm1A_associated_SNPs_13899 2 0 1 1 995287 995313 mRNA hsa-miR-149 IDUA miRanda miRanda
2192 chr17 42267965 42267965 1 + C T UCEC 42267967 + 42267947 42267987 41 GCGTTCTCTGAACATTACCGACAACTGTGTGATTCACTGCC GCGTTCTCTGAACATTACTGACAACTGTGTGATTCACTGCC < 41bp 0.713844715922896 0.4176223750248 0.25397614 0.23861039 prediction 0.427689431845792 Functional Loss - TMUB2 ENSG00000168591 CDS Human protein_coding chr17:42267967 chr17:42267965 stopgain 0.982 0 19 hm1A_associated_SNPs_13912 0 0 1 1 42267958 42267979 mRNA hsa-miR-377 TMUB2 miRanda miRanda
2192 chr19 41523821 41523821 1 + C G rs145450819 41523823 + 41523803 41523843 41 GGCTGGAGTGCTATGGTGCAATTTTTGTTCACTGCAACCTC GGCTGGAGTGCTATGGTGGAATTTTTGTTCACTGCAACCTC < 41bp 0.713840272992398 0.464033200616733 0.12809956 0.10812995 prediction 0.427680545984797 Functional Loss - CYP2B6 ENSG00000197408 UTR3 Human protein_coding chr19:41523823 chr19:41523821 . . 0 19 hm1A_associated_SNPs_13916 0 0 0 6 41523800 41523825 mRNA hsa-miR-25 CYP2B6 miRanda miRanda
2192 chr19 41523821 41523821 1 + C G rs145450819 41523823 + 41523803 41523843 41 GGCTGGAGTGCTATGGTGCAATTTTTGTTCACTGCAACCTC GGCTGGAGTGCTATGGTGGAATTTTTGTTCACTGCAACCTC < 41bp 0.713840272992398 0.464033200616733 0.12809956 0.10812995 prediction 0.427680545984797 Functional Loss - CYP2B6 ENSG00000197408 UTR3 Human protein_coding chr19:41523823 chr19:41523821 . . 0 19 hm1A_associated_SNPs_13916 0 0 0 6 41523804 41523825 mRNA hsa-miR-32 CYP2B6 miRanda miRanda
2192 chr19 41523821 41523821 1 + C G rs145450819 41523823 + 41523803 41523843 41 GGCTGGAGTGCTATGGTGCAATTTTTGTTCACTGCAACCTC GGCTGGAGTGCTATGGTGGAATTTTTGTTCACTGCAACCTC < 41bp 0.713840272992398 0.464033200616733 0.12809956 0.10812995 prediction 0.427680545984797 Functional Loss - CYP2B6 ENSG00000197408 UTR3 Human protein_coding chr19:41523823 chr19:41523821 . . 0 19 hm1A_associated_SNPs_13916 0 0 0 6 41523800 41523825 mRNA hsa-miR-92a CYP2B6 miRanda miRanda
2192 chr19 41523821 41523821 1 + C G rs145450819 41523823 + 41523803 41523843 41 GGCTGGAGTGCTATGGTGCAATTTTTGTTCACTGCAACCTC GGCTGGAGTGCTATGGTGGAATTTTTGTTCACTGCAACCTC < 41bp 0.713840272992398 0.464033200616733 0.12809956 0.10812995 prediction 0.427680545984797 Functional Loss - CYP2B6 ENSG00000197408 UTR3 Human protein_coding chr19:41523823 chr19:41523821 . . 0 19 hm1A_associated_SNPs_13916 0 0 0 6 41523804 41523825 mRNA hsa-miR-363 CYP2B6 miRanda miRanda
2192 chr19 41523821 41523821 1 + C G rs145450819 41523823 + 41523803 41523843 41 GGCTGGAGTGCTATGGTGCAATTTTTGTTCACTGCAACCTC GGCTGGAGTGCTATGGTGGAATTTTTGTTCACTGCAACCTC < 41bp 0.713840272992398 0.464033200616733 0.12809956 0.10812995 prediction 0.427680545984797 Functional Loss - CYP2B6 ENSG00000197408 UTR3 Human protein_coding chr19:41523823 chr19:41523821 . . 0 19 hm1A_associated_SNPs_13916 0 0 0 6 41523804 41523825 mRNA hsa-miR-367 CYP2B6 miRanda miRanda
2192 chr19 41523821 41523821 1 + C G rs145450819 41523823 + 41523803 41523843 41 GGCTGGAGTGCTATGGTGCAATTTTTGTTCACTGCAACCTC GGCTGGAGTGCTATGGTGGAATTTTTGTTCACTGCAACCTC < 41bp 0.713840272992398 0.464033200616733 0.12809956 0.10812995 prediction 0.427680545984797 Functional Loss - CYP2B6 ENSG00000197408 UTR3 Human protein_coding chr19:41523823 chr19:41523821 . . 0 19 hm1A_associated_SNPs_13916 0 0 0 6 41523800 41523825 mRNA hsa-miR-92b CYP2B6 miRanda miRanda
2192 chr2 158115899 158115899 1 + C T SKCM 158115901 + 158115881 158115921 41 ACTTTCTCCAAGGGACCCCAAAGCTCCAGGGCAGTTTGGGC ACTTTCTCCAAGGGACCCTAAAGCTCCAGGGCAGTTTGGGC < 41bp 0.71355034389176 0.487883470198853 0.25009197 0.22198468 prediction 0.42710068778352 Functional Loss - GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158115901 chr2:158115899 synonymous SNV . 0 19 hm1A_associated_SNPs_13977 0 0 1 3 158115888 158115910 mRNA hsa-miR-378 GALNT5 miRanda miRanda
2192 chr2 158115899 158115899 1 + C T SKCM 158115901 + 158115881 158115921 41 ACTTTCTCCAAGGGACCCCAAAGCTCCAGGGCAGTTTGGGC ACTTTCTCCAAGGGACCCTAAAGCTCCAGGGCAGTTTGGGC < 41bp 0.71355034389176 0.487883470198853 0.25009197 0.22198468 prediction 0.42710068778352 Functional Loss - GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158115901 chr2:158115899 synonymous SNV . 0 19 hm1A_associated_SNPs_13977 0 0 1 3 158115887 158115910 mRNA hsa-miR-422a GALNT5 miRanda miRanda
2192 chr2 158115899 158115899 1 + C T SKCM 158115901 + 158115881 158115921 41 ACTTTCTCCAAGGGACCCCAAAGCTCCAGGGCAGTTTGGGC ACTTTCTCCAAGGGACCCTAAAGCTCCAGGGCAGTTTGGGC < 41bp 0.71355034389176 0.487883470198853 0.25009197 0.22198468 prediction 0.42710068778352 Functional Loss - GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158115901 chr2:158115899 synonymous SNV . 0 19 hm1A_associated_SNPs_13977 0 0 1 3 158115891 158115914 mRNA hsa-miR-874 GALNT5 miRanda miRanda
2192 chr14 77294703 77294703 1 + C T rs148747129 77294705 + 77294685 77294725 41 GTGAGGCCGAATCCCCGCCGACTGTTGAAAAAGTGAAACCA GTGAGGCCGAATCCCCGCTGACTGTTGAAAAAGTGAAACCA < 41bp 0.79647490116053 0.583033817236799 0.69838935 0.65195996 prediction 0.42688216784746 Functional Loss - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77294705 chr14:77294703 nonsynonymous SNV 0.000 0 19 hm1A_associated_SNPs_14000 0 0 0 3 77294689 77294711 mRNA hsa-miR-212 C14orf166B miRanda miRanda
2192 chr14 77294703 77294703 1 + C T rs148747129 77294705 + 77294685 77294725 41 GTGAGGCCGAATCCCCGCCGACTGTTGAAAAAGTGAAACCA GTGAGGCCGAATCCCCGCTGACTGTTGAAAAAGTGAAACCA < 41bp 0.79647490116053 0.583033817236799 0.69838935 0.65195996 prediction 0.42688216784746 Functional Loss - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77294705 chr14:77294703 nonsynonymous SNV 0.000 0 19 hm1A_associated_SNPs_14000 0 0 0 3 77294690 77294711 mRNA hsa-miR-132 C14orf166B miRanda miRanda
2192 chr14 77294703 77294703 1 + C T rs148747129 77294705 + 77294685 77294725 41 GTGAGGCCGAATCCCCGCCGACTGTTGAAAAAGTGAAACCA GTGAGGCCGAATCCCCGCTGACTGTTGAAAAAGTGAAACCA < 41bp 0.79647490116053 0.583033817236799 0.69838935 0.65195996 prediction 0.42688216784746 Functional Loss - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77294705 chr14:77294703 nonsynonymous SNV 0.000 0 19 hm1A_associated_SNPs_14000 0 0 0 3 77294688 77294713 mRNA hsa-miR-421 C14orf166B miRanda miRanda
2192 chr1 89889956 89889956 1 + C T UCEC 89889958 + 89889938 89889978 41 GACTGAGAAGATGGAGAGCGACAGGGTCCAGTTGCTGGAAG GACTGAGAAGATGGAGAGTGACAGGGTCCAGTTGCTGGAAG < 41bp 0.743637845765797 0.530403351753385 0.27268025 0.23145476 prediction 0.426468988024824 Functional Loss - GBP1P1 ENSG00000225492 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:89889958 chr1:89889956 . . 0 19 hm1A_associated_SNPs_14050 0 0 1 2 89889939 89889964 mRNA hsa-miR-339-5p LOC400759 miRanda miRanda
2192 chr1 89889956 89889956 1 + C T UCEC 89889958 + 89889938 89889978 41 GACTGAGAAGATGGAGAGCGACAGGGTCCAGTTGCTGGAAG GACTGAGAAGATGGAGAGTGACAGGGTCCAGTTGCTGGAAG < 41bp 0.743637845765797 0.530403351753385 0.27268025 0.23145476 prediction 0.426468988024824 Functional Loss - GBP1P1 ENSG00000225492 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:89889958 chr1:89889956 . . 0 19 hm1A_associated_SNPs_14050 0 0 1 2 89889947 89889966 mRNA hsa-miR-504 LOC400759 miRanda miRanda
2192 chr7 98991736 98991736 1 + T C BRCA 98991735 + 98991715 98991755 41 TGGCGGCATGAGTATCTGGGATGTGAAGGTGAGGCTTGCCC TGGCGGCATGAGTATCTGGGACGTGAAGGTGAGGCTTGCCC < 41bp 0.736717584230121 0.523506626975488 0.18668267 0.22715375 prediction 0.426421914509266 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98991735 chr7:98991736 synonymous SNV . 0 22 hm1A_associated_SNPs_14057 0 0 1 2 98991726 98991741 mRNA hsa-miR-23a ARPC1B miRanda miRanda
2192 chr7 98991736 98991736 1 + T C BRCA 98991735 + 98991715 98991755 41 TGGCGGCATGAGTATCTGGGATGTGAAGGTGAGGCTTGCCC TGGCGGCATGAGTATCTGGGACGTGAAGGTGAGGCTTGCCC < 41bp 0.736717584230121 0.523506626975488 0.18668267 0.22715375 prediction 0.426421914509266 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98991735 chr7:98991736 synonymous SNV . 0 22 hm1A_associated_SNPs_14057 0 0 1 2 98991726 98991741 mRNA hsa-miR-23b ARPC1B miRanda miRanda
2192 chr15 20495390 20495390 1 + C T SKCM 20495392 + 20495372 20495412 41 GACATGAAGAGAAAGTTTCAAGATCTTCTGTGTGAGGAAAA GACATGAAGAGAAAGTTTTAAGATCTTCTGTGTGAGGAAAA < 41bp 0.758427655879898 0.545264268092969 0.13207334 0.13970417 prediction 0.426326775573857 Functional Loss - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20495392 chr15:20495390 . . 0 19 hm1A_associated_SNPs_14066 0 0 0 2 20495387 20495407 mRNA hsa-miR-377 LOC646096 miRanda miRanda
2192 chr15 20495390 20495390 1 + C T SKCM 20495392 + 20495372 20495412 41 GACATGAAGAGAAAGTTTCAAGATCTTCTGTGTGAGGAAAA GACATGAAGAGAAAGTTTTAAGATCTTCTGTGTGAGGAAAA < 41bp 0.758427655879898 0.545264268092969 0.13207334 0.13970417 prediction 0.426326775573857 Functional Loss - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20495392 chr15:20495390 . . 0 19 hm1A_associated_SNPs_14066 0 0 0 2 20495385 20495408 mRNA hsa-miR-342-3p LOC646096 miRanda miRanda
2192 chr7 6786706 6786706 1 + C T COAD 6786708 + 6786688 6786728 41 AACTGATTTCCTTGCCAACTAGTAAAAGCTGGACCTTCGGA AACTGATTTCCTTGCCAATTAGTAAAAGCTGGACCTTCGGA < 41bp 0.713155697190705 0.462951619463673 0.109577864 0.08160198 prediction 0.426311394381409 Functional Loss - PMS2CL ENSG00000187953 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:6786708 chr7:6786706 . . 0 19 hm1A_associated_SNPs_14068 0 0 0 1 6786683 6786706 mRNA hsa-miR-182 PMS2CL miRanda miRanda
2192 chr9 2643347 2643347 1 + C T ACC 2643349 + 2643329 2643369 41 CCCCATCAGCTGGGTATGCGACGATGATGCAGACTGCTCCG CCCCATCAGCTGGGTATGTGACGATGATGCAGACTGCTCCG < 41bp 0.828969740118642 0.615897640391923 0.32253507 0.32208967 prediction 0.426144199453438 Functional Loss - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2643349 chr9:2643347 synonymous SNV . 0 19 hm1A_associated_SNPs_14085 0 0 0 1 2643337 2643360 mRNA hsa-miR-448 VLDLR miRanda miRanda
2192 chr12 123285812 123285812 1 + C A rs545336133 123285814 + 123285794 123285834 41 GTCAGACAAGAGCTCTTGCGATGAATGCAAAGAGAAGAAAC GTCAGACAAGAGCTCTTGAGATGAATGCAAAGAGAAGAAAC < 41bp 0.829210793058315 0.616209528608867 0.28011638 0.17742747 prediction 0.426002528898897 Functional Loss - CCDC62 ENSG00000130783 CDS Human protein_coding chr12:123285814 chr12:123285812 stopgain 0.008 0 19 hm1A_associated_SNPs_14102 0 0 1 1 123285790 123285812 mRNA hsa-miR-335 CCDC62 miRanda miRanda
2192 chr19 10203171 10203171 1 - A G rs15723 10203172 - 10203152 10203192 41 TTCTTTGTGGCTCAGTGCCAATGTGTCCCACAGAACTTCCC TTCTTTGTGGCTCAGTGCCAACGTGTCCCACAGAACTTCCC < 41bp 0.712948420535554 0.489883824441231 0.13289735 0.122966796 prediction 0.425896841071107 Functional Loss - ANGPTL6;C19orf66 ENSG00000130812;ENSG00000130813 UTR3 Human other chr19:10203172 chr19:10203171 . . 0 22 hm1A_associated_SNPs_14113 0 0 0 2 10203171 10203195 mRNA hsa-miR-96 ANGPTL6 miRanda miRanda
2192 chr19 10203171 10203171 1 - A G rs15723 10203172 - 10203152 10203192 41 TTCTTTGTGGCTCAGTGCCAATGTGTCCCACAGAACTTCCC TTCTTTGTGGCTCAGTGCCAACGTGTCCCACAGAACTTCCC < 41bp 0.712948420535554 0.489883824441231 0.13289735 0.122966796 prediction 0.425896841071107 Functional Loss - ANGPTL6;C19orf66 ENSG00000130812;ENSG00000130813 UTR3 Human other chr19:10203172 chr19:10203171 . . 0 22 hm1A_associated_SNPs_14113 0 0 0 2 10203171 10203191 mRNA hsa-miR-1271 ANGPTL6 miRanda miRanda
2192 chr10 129866449 129866449 1 + C A rs7100666 129866451 + 129866431 129866471 41 GCACTTCACCAGCTGGCCCGACTTCGGAGTGCCTTTTACCC GCACTTCACCAGCTGGCCAGACTTCGGAGTGCCTTTTACCC < 41bp 0.816907631634203 0.604212516915638 0.26409113 0.13768107 prediction 0.42539022943713 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866451 chr10:129866449 synonymous SNV . 0 19 hm1A_associated_SNPs_14187 0 0 0 2 129866449 129866466 mRNA hsa-miR-124 PTPRE miRanda miRanda
2192 chr10 129866449 129866449 1 + C A rs7100666 129866451 + 129866431 129866471 41 GCACTTCACCAGCTGGCCCGACTTCGGAGTGCCTTTTACCC GCACTTCACCAGCTGGCCAGACTTCGGAGTGCCTTTTACCC < 41bp 0.816907631634203 0.604212516915638 0.26409113 0.13768107 prediction 0.42539022943713 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866451 chr10:129866449 synonymous SNV . 0 19 hm1A_associated_SNPs_14187 0 0 0 2 129866448 129866466 mRNA hsa-miR-506 PTPRE miRanda miRanda
2192 chr19 58991763 58991763 1 + C T UCEC 58991765 + 58991745 58991785 41 GCAGTGTGGCCGCGGCTTCGACTGGAAGTCAGTGTTCGTCA GCAGTGTGGCCGCGGCTTTGACTGGAAGTCAGTGTTCGTCA < 41bp 0.85895958094779 0.646276344718585 0.7088672 0.46098375 prediction 0.425366472458411 Functional Loss - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58991765 chr19:58991763 nonsynonymous SNV 0.053 0 19 hm1A_associated_SNPs_14192 0 0 1 2 58991756 58991781 mRNA hsa-miR-141 ZNF446 miRanda miRanda
2192 chr19 58991763 58991763 1 + C T UCEC 58991765 + 58991745 58991785 41 GCAGTGTGGCCGCGGCTTCGACTGGAAGTCAGTGTTCGTCA GCAGTGTGGCCGCGGCTTTGACTGGAAGTCAGTGTTCGTCA < 41bp 0.85895958094779 0.646276344718585 0.7088672 0.46098375 prediction 0.425366472458411 Functional Loss - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58991765 chr19:58991763 nonsynonymous SNV 0.053 0 19 hm1A_associated_SNPs_14192 0 0 1 2 58991759 58991781 mRNA hsa-miR-200a ZNF446 miRanda miRanda
2192 chr4 8239286 8239286 1 + C G CESC 8239288 + 8239268 8239308 41 CGAGCTGGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCT CGAGCTGGCAGAGCACTTGTACCTCAAGGCCCTGTCGCTCT < 41bp 0.712590567169859 0.498956811823261 0.44662982 0.44056013 prediction 0.425181134339719 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239288 chr4:8239286 nonsynonymous SNV 0.998 1 19 hm1A_associated_SNPs_14220 0 0 1 9 8239271 8239293 mRNA hsa-let-7a SH3TC1 miRanda miRanda
2192 chr4 8239286 8239286 1 + C G CESC 8239288 + 8239268 8239308 41 CGAGCTGGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCT CGAGCTGGCAGAGCACTTGTACCTCAAGGCCCTGTCGCTCT < 41bp 0.712590567169859 0.498956811823261 0.44662982 0.44056013 prediction 0.425181134339719 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239288 chr4:8239286 nonsynonymous SNV 0.998 1 19 hm1A_associated_SNPs_14220 0 0 1 9 8239271 8239293 mRNA hsa-let-7b SH3TC1 miRanda miRanda
2192 chr4 8239286 8239286 1 + C G CESC 8239288 + 8239268 8239308 41 CGAGCTGGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCT CGAGCTGGCAGAGCACTTGTACCTCAAGGCCCTGTCGCTCT < 41bp 0.712590567169859 0.498956811823261 0.44662982 0.44056013 prediction 0.425181134339719 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239288 chr4:8239286 nonsynonymous SNV 0.998 1 19 hm1A_associated_SNPs_14220 0 0 1 9 8239273 8239293 mRNA hsa-let-7c SH3TC1 miRanda miRanda
2192 chr4 8239286 8239286 1 + C G CESC 8239288 + 8239268 8239308 41 CGAGCTGGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCT CGAGCTGGCAGAGCACTTGTACCTCAAGGCCCTGTCGCTCT < 41bp 0.712590567169859 0.498956811823261 0.44662982 0.44056013 prediction 0.425181134339719 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239288 chr4:8239286 nonsynonymous SNV 0.998 1 19 hm1A_associated_SNPs_14220 0 0 1 9 8239271 8239293 mRNA hsa-let-7d SH3TC1 miRanda miRanda
2192 chr4 8239286 8239286 1 + C G CESC 8239288 + 8239268 8239308 41 CGAGCTGGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCT CGAGCTGGCAGAGCACTTGTACCTCAAGGCCCTGTCGCTCT < 41bp 0.712590567169859 0.498956811823261 0.44662982 0.44056013 prediction 0.425181134339719 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239288 chr4:8239286 nonsynonymous SNV 0.998 1 19 hm1A_associated_SNPs_14220 0 0 1 9 8239271 8239293 mRNA hsa-let-7e SH3TC1 miRanda miRanda
2192 chr4 8239286 8239286 1 + C G CESC 8239288 + 8239268 8239308 41 CGAGCTGGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCT CGAGCTGGCAGAGCACTTGTACCTCAAGGCCCTGTCGCTCT < 41bp 0.712590567169859 0.498956811823261 0.44662982 0.44056013 prediction 0.425181134339719 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239288 chr4:8239286 nonsynonymous SNV 0.998 1 19 hm1A_associated_SNPs_14220 0 0 1 9 8239272 8239293 mRNA hsa-let-7f SH3TC1 miRanda miRanda
2192 chr4 8239286 8239286 1 + C G CESC 8239288 + 8239268 8239308 41 CGAGCTGGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCT CGAGCTGGCAGAGCACTTGTACCTCAAGGCCCTGTCGCTCT < 41bp 0.712590567169859 0.498956811823261 0.44662982 0.44056013 prediction 0.425181134339719 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239288 chr4:8239286 nonsynonymous SNV 0.998 1 19 hm1A_associated_SNPs_14220 0 0 1 9 8239274 8239293 mRNA hsa-miR-98 SH3TC1 miRanda miRanda
2192 chr4 8239286 8239286 1 + C G CESC 8239288 + 8239268 8239308 41 CGAGCTGGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCT CGAGCTGGCAGAGCACTTGTACCTCAAGGCCCTGTCGCTCT < 41bp 0.712590567169859 0.498956811823261 0.44662982 0.44056013 prediction 0.425181134339719 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239288 chr4:8239286 nonsynonymous SNV 0.998 1 19 hm1A_associated_SNPs_14220 0 0 1 9 8239270 8239293 mRNA hsa-let-7g SH3TC1 miRanda miRanda
2192 chr4 8239286 8239286 1 + C G CESC 8239288 + 8239268 8239308 41 CGAGCTGGCAGAGCACTTCTACCTCAAGGCCCTGTCGCTCT CGAGCTGGCAGAGCACTTGTACCTCAAGGCCCTGTCGCTCT < 41bp 0.712590567169859 0.498956811823261 0.44662982 0.44056013 prediction 0.425181134339719 Functional Loss - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239288 chr4:8239286 nonsynonymous SNV 0.998 1 19 hm1A_associated_SNPs_14220 0 0 1 9 8239271 8239293 mRNA hsa-let-7i SH3TC1 miRanda miRanda
2192 chr22 19707664 19707664 1 + C A GBM 19707666 + 19707646 19707686 41 AGCCAGACGGTAGAGATTCTAAAACACACGGTGGACATTGA AGCCAGACGGTAGAGATTATAAAACACACGGTGGACATTGA < 41bp 0.768766367533241 0.556325241403958 0.19600269 0.24217397 prediction 0.424882252258565 Functional Loss - SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19707666 chr22:19707664 nonsynonymous SNV 0.962 0 19 hm1A_associated_SNPs_14253 0 0 1 1 19707643 19707664 mRNA hsa-miR-216b SEPT5 miRanda miRanda
2192 chr22 21363670 21363670 1 + C T UCEC 21363672 + 21363652 21363692 41 GCTTCATGAGCAGAGACACGAACCCAGAGCCAGTGCCGCCC GCTTCATGAGCAGAGACATGAACCCAGAGCCAGTGCCGCCC < 41bp 0.712281975049388 0.464543363321258 0.68866885 0.6245325 prediction 0.424563950098775 Functional Loss - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363672 chr22:21363670 . . 0 19 hm1A_associated_SNPs_14289 0 0 0 4 21363649 21363672 mRNA hsa-miR-187 FLJ39582 miRanda miRanda
2192 chr22 21363670 21363670 1 + C T UCEC 21363672 + 21363652 21363692 41 GCTTCATGAGCAGAGACACGAACCCAGAGCCAGTGCCGCCC GCTTCATGAGCAGAGACATGAACCCAGAGCCAGTGCCGCCC < 41bp 0.712281975049388 0.464543363321258 0.68866885 0.6245325 prediction 0.424563950098775 Functional Loss - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363672 chr22:21363670 . . 0 19 hm1A_associated_SNPs_14289 0 0 0 4 21363662 21363685 mRNA hsa-miR-149 FLJ39582 miRanda miRanda
2192 chr22 21363670 21363670 1 + C T UCEC 21363672 + 21363652 21363692 41 GCTTCATGAGCAGAGACACGAACCCAGAGCCAGTGCCGCCC GCTTCATGAGCAGAGACATGAACCCAGAGCCAGTGCCGCCC < 41bp 0.712281975049388 0.464543363321258 0.68866885 0.6245325 prediction 0.424563950098775 Functional Loss - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363672 chr22:21363670 . . 0 19 hm1A_associated_SNPs_14289 0 0 0 4 21363660 21363681 mRNA hsa-miR-330-5p FLJ39582 miRanda miRanda
2192 chr22 21363670 21363670 1 + C T UCEC 21363672 + 21363652 21363692 41 GCTTCATGAGCAGAGACACGAACCCAGAGCCAGTGCCGCCC GCTTCATGAGCAGAGACATGAACCCAGAGCCAGTGCCGCCC < 41bp 0.712281975049388 0.464543363321258 0.68866885 0.6245325 prediction 0.424563950098775 Functional Loss - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363672 chr22:21363670 . . 0 19 hm1A_associated_SNPs_14289 0 0 0 4 21363661 21363681 mRNA hsa-miR-326 FLJ39582 miRanda miRanda
2192 chr7 99441808 99441808 1 + C T ACC 99441810 + 99441790 99441830 41 GCTGGTCATCATGGATCCCGACATGATCAAAACAGTGTTAG GCTGGTCATCATGGATCCTGACATGATCAAAACAGTGTTAG < 41bp 0.767536929458644 0.555341823068946 0.22618034 0.1436696 prediction 0.424390212779396 Functional Loss - CYP3A43 ENSG00000021461 CDS Human protein_coding chr7:99441810 chr7:99441808 synonymous SNV . 0 19 hm1A_associated_SNPs_14316 0 0 0 2 99441807 99441829 mRNA hsa-miR-141 CYP3A43 miRanda miRanda
2192 chr7 99441808 99441808 1 + C T ACC 99441810 + 99441790 99441830 41 GCTGGTCATCATGGATCCCGACATGATCAAAACAGTGTTAG GCTGGTCATCATGGATCCTGACATGATCAAAACAGTGTTAG < 41bp 0.767536929458644 0.555341823068946 0.22618034 0.1436696 prediction 0.424390212779396 Functional Loss - CYP3A43 ENSG00000021461 CDS Human protein_coding chr7:99441810 chr7:99441808 synonymous SNV . 0 19 hm1A_associated_SNPs_14316 0 0 0 2 99441807 99441829 mRNA hsa-miR-200a CYP3A43 miRanda miRanda
2192 chrX 134483107 134483107 1 + C T SKCM 134483109 + 134483089 134483129 41 ATACCACCAACCATGCACCTAGAGTCACCTGCACTCCAGGT ATACCACCAACCATGCACTTAGAGTCACCTGCACTCCAGGT < 41bp 0.712163270358262 0.486933556584264 0.17951655 0.1504938 prediction 0.424326540716525 Functional Loss - ZNF449 ENSG00000173275 CDS Human protein_coding chrX:134483109 chrX:134483107 synonymous SNV . 0 19 hm1A_associated_SNPs_14326 0 0 0 1 134483101 134483120 mRNA hsa-miR-125a-3p ZNF449 miRanda miRanda
2192 chr3 113594372 113594372 1 + C T UCEC 113594374 + 113594354 113594394 41 GACATTTTGCTTCAGGGACGACTATACCTTTCAGAAAACTG GACATTTTGCTTCAGGGATGACTATACCTTTCAGAAAACTG < 41bp 0.712123438100129 0.45307252556328 0.108368725 0.0754002 prediction 0.424246876200259 Functional Loss - GRAMD1C ENSG00000178075 CDS Human protein_coding chr3:113594374 chr3:113594372 stopgain 0.958 1 19 hm1A_associated_SNPs_14337 0 0 0 1 113594368 113594387 mRNA hsa-miR-488 GRAMD1C miRanda miRanda
2192 chr7 39821436 39821436 1 + C T rs182652740 39821438 + 39821418 39821458 41 GCATGGGATGGATCCTTTCGAATGCACTTGAGCAGCGGTCT GCATGGGATGGATCCTTTTGAATGCACTTGAGCAGCGGTCT < 41bp 0.712099498820049 0.488606485789281 0.4870745 0.24557039 prediction 0.424198997640099 Functional Loss - LINC00265 ENSG00000188185 ncRNA_exonic Human lincRNA chr7:39821438 chr7:39821436 . . 0 19 hm1A_associated_SNPs_14343 0 0 0 3 39821426 39821447 lncRNA hsa-miR-519a-3p LINC00265 miRanda starBase2
2192 chr7 39821436 39821436 1 + C T rs182652740 39821438 + 39821418 39821458 41 GCATGGGATGGATCCTTTCGAATGCACTTGAGCAGCGGTCT GCATGGGATGGATCCTTTTGAATGCACTTGAGCAGCGGTCT < 41bp 0.712099498820049 0.488606485789281 0.4870745 0.24557039 prediction 0.424198997640099 Functional Loss - LINC00265 ENSG00000188185 ncRNA_exonic Human lincRNA chr7:39821438 chr7:39821436 . . 0 19 hm1A_associated_SNPs_14343 0 0 0 3 39821429 39821447 lncRNA hsa-miR-519b-3p LINC00265 miRanda starBase2
2192 chr7 39821436 39821436 1 + C T rs182652740 39821438 + 39821418 39821458 41 GCATGGGATGGATCCTTTCGAATGCACTTGAGCAGCGGTCT GCATGGGATGGATCCTTTTGAATGCACTTGAGCAGCGGTCT < 41bp 0.712099498820049 0.488606485789281 0.4870745 0.24557039 prediction 0.424198997640099 Functional Loss - LINC00265 ENSG00000188185 ncRNA_exonic Human lincRNA chr7:39821438 chr7:39821436 . . 0 19 hm1A_associated_SNPs_14343 0 0 0 3 39821429 39821447 lncRNA hsa-miR-519c-3p LINC00265 miRanda starBase2
2192 chr11 4159525 4159525 1 + C G CESC 4159527 + 4159507 4159547 41 AAGATAAAGAAAAGGTATCAAAAGAGGAAGAAGAGAAGGAG AAGATAAAGAAAAGGTATGAAAAGAGGAAGAAGAGAAGGAG < 41bp 0.785854497950905 0.573893515417729 0.36706144 0.46954057 prediction 0.423921965066352 Functional Loss - RRM1 ENSG00000167325 CDS Human protein_coding chr11:4159527 chr11:4159525 stopgain 0.301 0 19 hm1A_associated_SNPs_14376 0 0 1 1 4159504 4159525 mRNA hsa-miR-875-5p RRM1 miRanda miRanda
2192 chr1 20940378 20940378 1 + C A LGG 20940380 + 20940360 20940400 41 CCATGTGGGGCCTGCAGGCAAGTCATGAGAGAGGTAAGCAG CCATGTGGGGCCTGCAGGAAAGTCATGAGAGAGGTAAGCAG < 41bp 0.711827174114465 0.496625698479578 0.1001752 0.1170834 prediction 0.42365434822893 Functional Loss - CDA ENSG00000158825 CDS Human protein_coding chr1:20940380 chr1:20940378 nonsynonymous SNV 0.999 4 19 hm1A_associated_SNPs_14401 0 0 0 1 20940378 20940392 mRNA hsa-miR-19b CDA miRanda miRanda
2192 chr4 175224908 175224908 1 + C T SKCM 175224910 + 175224890 175224930 41 ACAAAAAAGCAGTTTATCCAATGTGGGTTTGCAGAATGGAA ACAAAAAAGCAGTTTATCTAATGTGGGTTTGCAGAATGGAA < 41bp 0.71180077033117 0.430050981477216 0.05040276 0.042247176 prediction 0.42360154066234 Functional Loss - CEP44 ENSG00000164118 CDS Human protein_coding chr4:175224910 chr4:175224908 stopgain 0.996 1 19 hm1A_associated_SNPs_14407 0 0 1 1 175224906 175224926 mRNA hsa-miR-544 KIAA1712 miRanda miRanda
2192 chr4 52928476 52928476 1 + C T UCEC 52928478 + 52928458 52928498 41 TTGAACTCAACCCGGAGTCAATGCAACCAGGTTCAAGACGA TTGAACTCAACCCGGAGTTAATGCAACCAGGTTCAAGACGA < 41bp 0.71168437394761 0.415511826353728 0.27572554 0.19718716 prediction 0.42336874789522 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52928478 chr4:52928476 stopgain 0.204 1 19 hm1A_associated_SNPs_14434 0 0 0 3 52928463 52928483 mRNA hsa-miR-33a SPATA18 miRanda miRanda
2192 chr4 52928476 52928476 1 + C T UCEC 52928478 + 52928458 52928498 41 TTGAACTCAACCCGGAGTCAATGCAACCAGGTTCAAGACGA TTGAACTCAACCCGGAGTTAATGCAACCAGGTTCAAGACGA < 41bp 0.71168437394761 0.415511826353728 0.27572554 0.19718716 prediction 0.42336874789522 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52928478 chr4:52928476 stopgain 0.204 1 19 hm1A_associated_SNPs_14434 0 0 0 3 52928465 52928491 mRNA hsa-miR-490-3p SPATA18 miRanda miRanda
2192 chr4 52928476 52928476 1 + C T UCEC 52928478 + 52928458 52928498 41 TTGAACTCAACCCGGAGTCAATGCAACCAGGTTCAAGACGA TTGAACTCAACCCGGAGTTAATGCAACCAGGTTCAAGACGA < 41bp 0.71168437394761 0.415511826353728 0.27572554 0.19718716 prediction 0.42336874789522 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52928478 chr4:52928476 stopgain 0.204 1 19 hm1A_associated_SNPs_14434 0 0 0 3 52928464 52928483 mRNA hsa-miR-33b SPATA18 miRanda miRanda
2192 chrX 69652259 69652259 1 + C T BLCA 69652261 + 69652241 69652281 41 GGATTCGGTCACCACCAACGACTGCCAGCTGCTGCAGCAGA GGATTCGGTCACCACCAATGACTGCCAGCTGCTGCAGCAGA < 41bp 0.711574203067355 0.44044477032883 0.24698904 0.19730052 prediction 0.42314840613471 Functional Loss - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69652261 chrX:69652259 synonymous SNV . 0 19 hm1A_associated_SNPs_14475 0 0 0 1 69652245 69652267 mRNA hsa-miR-34c-5p GDPD2 miRanda miRanda
2192 chr14 95081168 95081168 1 + C T UCEC 95081170 + 95081150 95081190 41 CACCCTCAATCAGTCCAGCGATGAGCTGCAGCTGAGTATGG CACCCTCAATCAGTCCAGTGATGAGCTGCAGCTGAGTATGG < 41bp 0.711460054957132 0.45741096726084 0.2759593 0.14975184 prediction 0.422920109914264 Functional Loss - SERPINA3 ENSG00000196136 CDS Human protein_coding chr14:95081170 chr14:95081168 synonymous SNV . 0 19 hm1A_associated_SNPs_14511 0 0 1 2 95081150 95081168 mRNA hsa-miR-378 SERPINA3 miRanda miRanda
2192 chr14 95081168 95081168 1 + C T UCEC 95081170 + 95081150 95081190 41 CACCCTCAATCAGTCCAGCGATGAGCTGCAGCTGAGTATGG CACCCTCAATCAGTCCAGTGATGAGCTGCAGCTGAGTATGG < 41bp 0.711460054957132 0.45741096726084 0.2759593 0.14975184 prediction 0.422920109914264 Functional Loss - SERPINA3 ENSG00000196136 CDS Human protein_coding chr14:95081170 chr14:95081168 synonymous SNV . 0 19 hm1A_associated_SNPs_14511 0 0 1 2 95081143 95081168 mRNA hsa-miR-422a SERPINA3 miRanda miRanda
2192 chr16 72055123 72055123 1 + C T UCEC 72055125 + 72055105 72055145 41 ACTGGGCCCCCTGGCCGACTACCTGGTGGTGAATGTGTCCA ACTGGGCCCCCTGGCCGATTACCTGGTGGTGAATGTGTCCA < 41bp 0.806995698715511 0.595582164958377 0.7200051 0.68347466 prediction 0.422827067514269 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72055125 chr16:72055123 synonymous SNV . 0 19 hm1A_associated_SNPs_14520 0 0 1 5 72055116 72055137 mRNA hsa-miR-197 DHODH miRanda miRanda
2192 chr16 72055123 72055123 1 + C T UCEC 72055125 + 72055105 72055145 41 ACTGGGCCCCCTGGCCGACTACCTGGTGGTGAATGTGTCCA ACTGGGCCCCCTGGCCGATTACCTGGTGGTGAATGTGTCCA < 41bp 0.806995698715511 0.595582164958377 0.7200051 0.68347466 prediction 0.422827067514269 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72055125 chr16:72055123 synonymous SNV . 0 19 hm1A_associated_SNPs_14520 0 0 1 5 72055121 72055141 mRNA hsa-miR-181a DHODH miRanda miRanda
2192 chr16 72055123 72055123 1 + C T UCEC 72055125 + 72055105 72055145 41 ACTGGGCCCCCTGGCCGACTACCTGGTGGTGAATGTGTCCA ACTGGGCCCCCTGGCCGATTACCTGGTGGTGAATGTGTCCA < 41bp 0.806995698715511 0.595582164958377 0.7200051 0.68347466 prediction 0.422827067514269 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72055125 chr16:72055123 synonymous SNV . 0 19 hm1A_associated_SNPs_14520 0 0 1 5 72055121 72055141 mRNA hsa-miR-181b DHODH miRanda miRanda
2192 chr16 72055123 72055123 1 + C T UCEC 72055125 + 72055105 72055145 41 ACTGGGCCCCCTGGCCGACTACCTGGTGGTGAATGTGTCCA ACTGGGCCCCCTGGCCGATTACCTGGTGGTGAATGTGTCCA < 41bp 0.806995698715511 0.595582164958377 0.7200051 0.68347466 prediction 0.422827067514269 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72055125 chr16:72055123 synonymous SNV . 0 19 hm1A_associated_SNPs_14520 0 0 1 5 72055118 72055141 mRNA hsa-miR-181c DHODH miRanda miRanda
2192 chr16 72055123 72055123 1 + C T UCEC 72055125 + 72055105 72055145 41 ACTGGGCCCCCTGGCCGACTACCTGGTGGTGAATGTGTCCA ACTGGGCCCCCTGGCCGATTACCTGGTGGTGAATGTGTCCA < 41bp 0.806995698715511 0.595582164958377 0.7200051 0.68347466 prediction 0.422827067514269 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72055125 chr16:72055123 synonymous SNV . 0 19 hm1A_associated_SNPs_14520 0 0 1 5 72055121 72055141 mRNA hsa-miR-181d DHODH miRanda miRanda
2192 chr6 117594365 117594365 1 + T C rs185168694 117594364 + 117594344 117594384 41 TCTCAGTATTTGGCAGAACAATTGCAATTGCACTGGGTATA TCTCAGTATTTGGCAGAACAACTGCAATTGCACTGGGTATA < 41bp 0.781980452899096 0.570683474692777 0.018948674 0.016362011 prediction 0.422593956412638 Functional Loss - VGLL2 ENSG00000170162 UTR3 Human protein_coding chr6:117594364 chr6:117594365 . . 0 22 hm1A_associated_SNPs_14550 0 0 0 12 117594355 117594376 mRNA hsa-miR-33a VGLL2 miRanda miRanda
2192 chr6 117594365 117594365 1 + T C rs185168694 117594364 + 117594344 117594384 41 TCTCAGTATTTGGCAGAACAATTGCAATTGCACTGGGTATA TCTCAGTATTTGGCAGAACAACTGCAATTGCACTGGGTATA < 41bp 0.781980452899096 0.570683474692777 0.018948674 0.016362011 prediction 0.422593956412638 Functional Loss - VGLL2 ENSG00000170162 UTR3 Human protein_coding chr6:117594364 chr6:117594365 . . 0 22 hm1A_associated_SNPs_14550 0 0 0 12 117594358 117594380 mRNA hsa-miR-199a-5p VGLL2 miRanda miRanda
2192 chr6 117594365 117594365 1 + T C rs185168694 117594364 + 117594344 117594384 41 TCTCAGTATTTGGCAGAACAATTGCAATTGCACTGGGTATA TCTCAGTATTTGGCAGAACAACTGCAATTGCACTGGGTATA < 41bp 0.781980452899096 0.570683474692777 0.018948674 0.016362011 prediction 0.422593956412638 Functional Loss - VGLL2 ENSG00000170162 UTR3 Human protein_coding chr6:117594364 chr6:117594365 . . 0 22 hm1A_associated_SNPs_14550 0 0 0 12 117594357 117594379 mRNA hsa-miR-148a VGLL2 miRanda miRanda
2192 chr6 117594365 117594365 1 + T C rs185168694 117594364 + 117594344 117594384 41 TCTCAGTATTTGGCAGAACAATTGCAATTGCACTGGGTATA TCTCAGTATTTGGCAGAACAACTGCAATTGCACTGGGTATA < 41bp 0.781980452899096 0.570683474692777 0.018948674 0.016362011 prediction 0.422593956412638 Functional Loss - VGLL2 ENSG00000170162 UTR3 Human protein_coding chr6:117594364 chr6:117594365 . . 0 22 hm1A_associated_SNPs_14550 0 0 0 12 117594359 117594380 mRNA hsa-miR-199b-5p VGLL2 miRanda miRanda
2192 chr6 117594365 117594365 1 + T C rs185168694 117594364 + 117594344 117594384 41 TCTCAGTATTTGGCAGAACAATTGCAATTGCACTGGGTATA TCTCAGTATTTGGCAGAACAACTGCAATTGCACTGGGTATA < 41bp 0.781980452899096 0.570683474692777 0.018948674 0.016362011 prediction 0.422593956412638 Functional Loss - VGLL2 ENSG00000170162 UTR3 Human protein_coding chr6:117594364 chr6:117594365 . . 0 22 hm1A_associated_SNPs_14550 0 0 0 12 117594357 117594378 mRNA hsa-miR-130a VGLL2 miRanda miRanda
2192 chr6 117594365 117594365 1 + T C rs185168694 117594364 + 117594344 117594384 41 TCTCAGTATTTGGCAGAACAATTGCAATTGCACTGGGTATA TCTCAGTATTTGGCAGAACAACTGCAATTGCACTGGGTATA < 41bp 0.781980452899096 0.570683474692777 0.018948674 0.016362011 prediction 0.422593956412638 Functional Loss - VGLL2 ENSG00000170162 UTR3 Human protein_coding chr6:117594364 chr6:117594365 . . 0 22 hm1A_associated_SNPs_14550 0 0 0 12 117594358 117594379 mRNA hsa-miR-152 VGLL2 miRanda miRanda
2192 chr6 117594365 117594365 1 + T C rs185168694 117594364 + 117594344 117594384 41 TCTCAGTATTTGGCAGAACAATTGCAATTGCACTGGGTATA TCTCAGTATTTGGCAGAACAACTGCAATTGCACTGGGTATA < 41bp 0.781980452899096 0.570683474692777 0.018948674 0.016362011 prediction 0.422593956412638 Functional Loss - VGLL2 ENSG00000170162 UTR3 Human protein_coding chr6:117594364 chr6:117594365 . . 0 22 hm1A_associated_SNPs_14550 0 0 0 12 117594355 117594378 mRNA hsa-miR-301a VGLL2 miRanda miRanda
2192 chr6 117594365 117594365 1 + T C rs185168694 117594364 + 117594344 117594384 41 TCTCAGTATTTGGCAGAACAATTGCAATTGCACTGGGTATA TCTCAGTATTTGGCAGAACAACTGCAATTGCACTGGGTATA < 41bp 0.781980452899096 0.570683474692777 0.018948674 0.016362011 prediction 0.422593956412638 Functional Loss - VGLL2 ENSG00000170162 UTR3 Human protein_coding chr6:117594364 chr6:117594365 . . 0 22 hm1A_associated_SNPs_14550 0 0 0 12 117594359 117594378 mRNA hsa-miR-130b VGLL2 miRanda miRanda
2192 chr6 117594365 117594365 1 + T C rs185168694 117594364 + 117594344 117594384 41 TCTCAGTATTTGGCAGAACAATTGCAATTGCACTGGGTATA TCTCAGTATTTGGCAGAACAACTGCAATTGCACTGGGTATA < 41bp 0.781980452899096 0.570683474692777 0.018948674 0.016362011 prediction 0.422593956412638 Functional Loss - VGLL2 ENSG00000170162 UTR3 Human protein_coding chr6:117594364 chr6:117594365 . . 0 22 hm1A_associated_SNPs_14550 0 0 0 12 117594357 117594379 mRNA hsa-miR-148b VGLL2 miRanda miRanda
2192 chr6 117594365 117594365 1 + T C rs185168694 117594364 + 117594344 117594384 41 TCTCAGTATTTGGCAGAACAATTGCAATTGCACTGGGTATA TCTCAGTATTTGGCAGAACAACTGCAATTGCACTGGGTATA < 41bp 0.781980452899096 0.570683474692777 0.018948674 0.016362011 prediction 0.422593956412638 Functional Loss - VGLL2 ENSG00000170162 UTR3 Human protein_coding chr6:117594364 chr6:117594365 . . 0 22 hm1A_associated_SNPs_14550 0 0 0 12 117594356 117594376 mRNA hsa-miR-33b VGLL2 miRanda miRanda
2192 chr6 117594365 117594365 1 + T C rs185168694 117594364 + 117594344 117594384 41 TCTCAGTATTTGGCAGAACAATTGCAATTGCACTGGGTATA TCTCAGTATTTGGCAGAACAACTGCAATTGCACTGGGTATA < 41bp 0.781980452899096 0.570683474692777 0.018948674 0.016362011 prediction 0.422593956412638 Functional Loss - VGLL2 ENSG00000170162 UTR3 Human protein_coding chr6:117594364 chr6:117594365 . . 0 22 hm1A_associated_SNPs_14550 0 0 0 12 117594356 117594378 mRNA hsa-miR-454 VGLL2 miRanda miRanda
2192 chr6 117594365 117594365 1 + T C rs185168694 117594364 + 117594344 117594384 41 TCTCAGTATTTGGCAGAACAATTGCAATTGCACTGGGTATA TCTCAGTATTTGGCAGAACAACTGCAATTGCACTGGGTATA < 41bp 0.781980452899096 0.570683474692777 0.018948674 0.016362011 prediction 0.422593956412638 Functional Loss - VGLL2 ENSG00000170162 UTR3 Human protein_coding chr6:117594364 chr6:117594365 . . 0 22 hm1A_associated_SNPs_14550 0 0 0 12 117594355 117594378 mRNA hsa-miR-301b VGLL2 miRanda miRanda
2192 chr1 4834565 4834565 1 + C T rs117864953 4834567 + 4834547 4834587 41 AATCTCCTGCTGACTGGCCGAAGTCTTTTTTACCTCCTGGG AATCTCCTGCTGACTGGCTGAAGTCTTTTTTACCTCCTGGG < 41bp 0.844146765422163 0.632911305669318 0.4099048 0.17910945 prediction 0.422470919505689 Functional Loss - AJAP1 ENSG00000196581 UTR3 Human protein_coding chr1:4834567 chr1:4834565 . . 0 19 hm1A_associated_SNPs_14566 0 0 0 1 4834560 4834575 mRNA hsa-miR-499-5p AJAP1 miRanda miRanda
2192 chr11 66288771 66288771 1 - G T STAD 66288769 - 66288749 66288789 41 CAAACTGGCCAGAAACCTCTAGGAAGACGGGGACGCTGGGA CAAACTGGCCAGAAACCTATAGGAAGACGGGGACGCTGGGA < 41bp 0.819071042906094 0.607914904701685 0.4553613 0.33894962 prediction 0.422312276408817 Functional Loss - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66288769 chr11:66288771 stopgain 0.990 0 19 hm1A_associated_SNPs_14589 0 0 0 1 66288764 66288783 mRNA hsa-miR-384 ZDHHC24 miRanda miRanda
2192 chr17 32598725 32598725 1 + C A COAD 32598727 + 32598707 32598747 41 GCTCCACAGCTTCAAGACCAAACTGGACAAGGAGATCTGTG GCTCCACAGCTTCAAGACAAAACTGGACAAGGAGATCTGTG < 41bp 0.71113545451285 0.491139889102926 0.23992556 0.19443607 prediction 0.422270909025699 Functional Loss - CCL7 ENSG00000108688 CDS Human protein_coding chr17:32598727 chr17:32598725 nonsynonymous SNV 0.341 0 19 hm1A_associated_SNPs_14595 0 0 0 1 32598716 32598734 mRNA hsa-miR-145 CCL7 miRanda miRanda
2192 chr7 73107983 73107983 1 + C T BRCA 73107985 + 73107965 73108005 41 GCTTGTTTTCTGGGCCTTCGACCTTTATACCAGAGGTGAGG GCTTGTTTTCTGGGCCTTTGACCTTTATACCAGAGGTGAGG < 41bp 0.710994128882327 0.441036382333305 0.20449394 0.113542706 prediction 0.421988257764654 Functional Loss - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73107985 chr7:73107983 nonsynonymous SNV 0.746 0 19 hm1A_associated_SNPs_14622 0 0 1 1 73107973 73107994 mRNA hsa-miR-340 WBSCR22 miRanda miRanda
2192 chr8 135612768 135612768 1 + T C DLBC 135612767 + 135612747 135612787 41 CGGTGGGACACTTCAGCAAGATGTTACTGTGTTTCTGAATT CGGTGGGACACTTCAGCAAGACGTTACTGTGTTTCTGAATT < 41bp 0.71095258012101 0.497951856389986 0.07466903 0.07952893 prediction 0.421905160242019 Functional Loss - ZFAT ENSG00000066827 CDS Human protein_coding chr8:135612767 chr8:135612768 nonsynonymous SNV 1.000 0 22 hm1A_associated_SNPs_14632 0 0 0 2 135612760 135612779 mRNA hsa-miR-27a ZFATAS miRanda miRanda
2192 chr8 135612768 135612768 1 + T C DLBC 135612767 + 135612747 135612787 41 CGGTGGGACACTTCAGCAAGATGTTACTGTGTTTCTGAATT CGGTGGGACACTTCAGCAAGACGTTACTGTGTTTCTGAATT < 41bp 0.71095258012101 0.497951856389986 0.07466903 0.07952893 prediction 0.421905160242019 Functional Loss - ZFAT ENSG00000066827 CDS Human protein_coding chr8:135612767 chr8:135612768 nonsynonymous SNV 1.000 0 22 hm1A_associated_SNPs_14632 0 0 0 2 135612759 135612779 mRNA hsa-miR-27b ZFATAS miRanda miRanda
2192 chr1 202245515 202245515 1 + C T CESC 202245517 + 202245497 202245537 41 CCGCCACCTCTGGCTGGACGACAATGCACTCACGGAGATCC CCGCCACCTCTGGCTGGATGACAATGCACTCACGGAGATCC < 41bp 0.804144565455996 0.593199075707656 0.24916437 0.2249457 prediction 0.42189097949668 Functional Loss - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202245517 chr1:202245515 synonymous SNV . 0 19 hm1A_associated_SNPs_14639 0 0 0 2 202245506 202245525 mRNA hsa-miR-33a LGR6 miRanda miRanda
2192 chr1 202245515 202245515 1 + C T CESC 202245517 + 202245497 202245537 41 CCGCCACCTCTGGCTGGACGACAATGCACTCACGGAGATCC CCGCCACCTCTGGCTGGATGACAATGCACTCACGGAGATCC < 41bp 0.804144565455996 0.593199075707656 0.24916437 0.2249457 prediction 0.42189097949668 Functional Loss - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202245517 chr1:202245515 synonymous SNV . 0 19 hm1A_associated_SNPs_14639 0 0 0 2 202245507 202245525 mRNA hsa-miR-33b LGR6 miRanda miRanda
2192 chr12 120428098 120428098 1 + C T KIRP 120428100 + 120428080 120428120 41 GGAGCTGACAGACAAGCTCGAGGTGAGGACCTCCCTCCAGG GGAGCTGACAGACAAGCTTGAGGTGAGGACCTCCCTCCAGG < 41bp 0.717899703836504 0.506969876489001 0.54747665 0.3384471 prediction 0.421859654695006 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120428100 chr12:120428098 synonymous SNV . 0 19 hm1A_associated_SNPs_14644 0 0 1 12 120428083 120428101 mRNA hsa-miR-302a CCDC64 miRanda miRanda
2192 chr12 120428098 120428098 1 + C T KIRP 120428100 + 120428080 120428120 41 GGAGCTGACAGACAAGCTCGAGGTGAGGACCTCCCTCCAGG GGAGCTGACAGACAAGCTTGAGGTGAGGACCTCCCTCCAGG < 41bp 0.717899703836504 0.506969876489001 0.54747665 0.3384471 prediction 0.421859654695006 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120428100 chr12:120428098 synonymous SNV . 0 19 hm1A_associated_SNPs_14644 0 0 1 12 120428083 120428101 mRNA hsa-miR-302b CCDC64 miRanda miRanda
2192 chr12 120428098 120428098 1 + C T KIRP 120428100 + 120428080 120428120 41 GGAGCTGACAGACAAGCTCGAGGTGAGGACCTCCCTCCAGG GGAGCTGACAGACAAGCTTGAGGTGAGGACCTCCCTCCAGG < 41bp 0.717899703836504 0.506969876489001 0.54747665 0.3384471 prediction 0.421859654695006 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120428100 chr12:120428098 synonymous SNV . 0 19 hm1A_associated_SNPs_14644 0 0 1 12 120428081 120428101 mRNA hsa-miR-302c CCDC64 miRanda miRanda
2192 chr12 120428098 120428098 1 + C T KIRP 120428100 + 120428080 120428120 41 GGAGCTGACAGACAAGCTCGAGGTGAGGACCTCCCTCCAGG GGAGCTGACAGACAAGCTTGAGGTGAGGACCTCCCTCCAGG < 41bp 0.717899703836504 0.506969876489001 0.54747665 0.3384471 prediction 0.421859654695006 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120428100 chr12:120428098 synonymous SNV . 0 19 hm1A_associated_SNPs_14644 0 0 1 12 120428083 120428101 mRNA hsa-miR-302d CCDC64 miRanda miRanda
2192 chr12 120428098 120428098 1 + C T KIRP 120428100 + 120428080 120428120 41 GGAGCTGACAGACAAGCTCGAGGTGAGGACCTCCCTCCAGG GGAGCTGACAGACAAGCTTGAGGTGAGGACCTCCCTCCAGG < 41bp 0.717899703836504 0.506969876489001 0.54747665 0.3384471 prediction 0.421859654695006 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120428100 chr12:120428098 synonymous SNV . 0 19 hm1A_associated_SNPs_14644 0 0 1 12 120428086 120428101 mRNA hsa-miR-372 CCDC64 miRanda miRanda
2192 chr12 120428098 120428098 1 + C T KIRP 120428100 + 120428080 120428120 41 GGAGCTGACAGACAAGCTCGAGGTGAGGACCTCCCTCCAGG GGAGCTGACAGACAAGCTTGAGGTGAGGACCTCCCTCCAGG < 41bp 0.717899703836504 0.506969876489001 0.54747665 0.3384471 prediction 0.421859654695006 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120428100 chr12:120428098 synonymous SNV . 0 19 hm1A_associated_SNPs_14644 0 0 1 12 120428086 120428101 mRNA hsa-miR-373 CCDC64 miRanda miRanda
2192 chr12 120428098 120428098 1 + C T KIRP 120428100 + 120428080 120428120 41 GGAGCTGACAGACAAGCTCGAGGTGAGGACCTCCCTCCAGG GGAGCTGACAGACAAGCTTGAGGTGAGGACCTCCCTCCAGG < 41bp 0.717899703836504 0.506969876489001 0.54747665 0.3384471 prediction 0.421859654695006 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120428100 chr12:120428098 synonymous SNV . 0 19 hm1A_associated_SNPs_14644 0 0 1 12 120428084 120428101 mRNA hsa-miR-520e CCDC64 miRanda miRanda
2192 chr12 120428098 120428098 1 + C T KIRP 120428100 + 120428080 120428120 41 GGAGCTGACAGACAAGCTCGAGGTGAGGACCTCCCTCCAGG GGAGCTGACAGACAAGCTTGAGGTGAGGACCTCCCTCCAGG < 41bp 0.717899703836504 0.506969876489001 0.54747665 0.3384471 prediction 0.421859654695006 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120428100 chr12:120428098 synonymous SNV . 0 19 hm1A_associated_SNPs_14644 0 0 1 12 120428086 120428101 mRNA hsa-miR-520a-3p CCDC64 miRanda miRanda
2192 chr12 120428098 120428098 1 + C T KIRP 120428100 + 120428080 120428120 41 GGAGCTGACAGACAAGCTCGAGGTGAGGACCTCCCTCCAGG GGAGCTGACAGACAAGCTTGAGGTGAGGACCTCCCTCCAGG < 41bp 0.717899703836504 0.506969876489001 0.54747665 0.3384471 prediction 0.421859654695006 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120428100 chr12:120428098 synonymous SNV . 0 19 hm1A_associated_SNPs_14644 0 0 1 12 120428087 120428101 mRNA hsa-miR-520b CCDC64 miRanda miRanda
2192 chr12 120428098 120428098 1 + C T KIRP 120428100 + 120428080 120428120 41 GGAGCTGACAGACAAGCTCGAGGTGAGGACCTCCCTCCAGG GGAGCTGACAGACAAGCTTGAGGTGAGGACCTCCCTCCAGG < 41bp 0.717899703836504 0.506969876489001 0.54747665 0.3384471 prediction 0.421859654695006 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120428100 chr12:120428098 synonymous SNV . 0 19 hm1A_associated_SNPs_14644 0 0 1 12 120428086 120428101 mRNA hsa-miR-520c-3p CCDC64 miRanda miRanda
2192 chr12 120428098 120428098 1 + C T KIRP 120428100 + 120428080 120428120 41 GGAGCTGACAGACAAGCTCGAGGTGAGGACCTCCCTCCAGG GGAGCTGACAGACAAGCTTGAGGTGAGGACCTCCCTCCAGG < 41bp 0.717899703836504 0.506969876489001 0.54747665 0.3384471 prediction 0.421859654695006 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120428100 chr12:120428098 synonymous SNV . 0 19 hm1A_associated_SNPs_14644 0 0 1 12 120428086 120428101 mRNA hsa-miR-520d-3p CCDC64 miRanda miRanda
2192 chr12 120428098 120428098 1 + C T KIRP 120428100 + 120428080 120428120 41 GGAGCTGACAGACAAGCTCGAGGTGAGGACCTCCCTCCAGG GGAGCTGACAGACAAGCTTGAGGTGAGGACCTCCCTCCAGG < 41bp 0.717899703836504 0.506969876489001 0.54747665 0.3384471 prediction 0.421859654695006 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120428100 chr12:120428098 synonymous SNV . 0 19 hm1A_associated_SNPs_14644 0 0 1 12 120428091 120428101 mRNA hsa-miR-302e CCDC64 miRanda miRanda
2192 chr9 32436370 32436370 1 + C T LGG 32436372 + 32436352 32436392 41 ACAAGCAGGCACCACAGACTATCCATCTGCCTTCTGGGGAA ACAAGCAGGCACCACAGATTATCCATCTGCCTTCTGGGGAA < 41bp 0.710805360837443 0.442693259537454 0.09768033 0.10044995 prediction 0.421610721674886 Functional Loss - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32436372 chr9:32436370 nonsynonymous SNV 0.996 4 19 hm1A_associated_SNPs_14671 0 0 1 2 32436362 32436383 mRNA hsa-miR-449a ACO1 miRanda miRanda
2192 chr9 32436370 32436370 1 + C T LGG 32436372 + 32436352 32436392 41 ACAAGCAGGCACCACAGACTATCCATCTGCCTTCTGGGGAA ACAAGCAGGCACCACAGATTATCCATCTGCCTTCTGGGGAA < 41bp 0.710805360837443 0.442693259537454 0.09768033 0.10044995 prediction 0.421610721674886 Functional Loss - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32436372 chr9:32436370 nonsynonymous SNV 0.996 4 19 hm1A_associated_SNPs_14671 0 0 1 2 32436362 32436383 mRNA hsa-miR-449b ACO1 miRanda miRanda
2192 chr16 31717302 31717302 1 + C T rs186274949 31717304 + 31717284 31717324 41 CCTGTTTGTGATCACAGCCGAGGACCAGCGAGGTAGCATTA CCTGTTTGTGATCACAGCTGAGGACCAGCGAGGTAGCATTA < 41bp 0.794838367180031 0.584261978020637 0.104159296 0.09605119 prediction 0.421152778318788 Functional Loss - CLUHP3 ENSG00000131797 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:31717304 chr16:31717302 . . 0 19 hm1A_associated_SNPs_14732 0 0 1 1 31717301 31717325 mRNA hsa-miR-155 KIAA0664P3 miRanda miRanda
2192 chr7 5330411 5330411 1 + C T UCEC 5330413 + 5330393 5330433 41 ATCACGCCATCTACTTTGCGATGCTGCTGGCTGGCGTGGGC ATCACGCCATCTACTTTGTGATGCTGCTGGCTGGCGTGGGC < 41bp 0.875084524732134 0.664617244283301 0.30001032 0.19897318 prediction 0.420934560897666 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5330413 chr7:5330411 nonsynonymous SNV 0.976 3 19 hm1A_associated_SNPs_14762 0 0 0 8 5330397 5330421 mRNA hsa-miR-15a SLC29A4 miRanda miRanda
2192 chr7 5330411 5330411 1 + C T UCEC 5330413 + 5330393 5330433 41 ATCACGCCATCTACTTTGCGATGCTGCTGGCTGGCGTGGGC ATCACGCCATCTACTTTGTGATGCTGCTGGCTGGCGTGGGC < 41bp 0.875084524732134 0.664617244283301 0.30001032 0.19897318 prediction 0.420934560897666 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5330413 chr7:5330411 nonsynonymous SNV 0.976 3 19 hm1A_associated_SNPs_14762 0 0 0 8 5330397 5330421 mRNA hsa-miR-16 SLC29A4 miRanda miRanda
2192 chr7 5330411 5330411 1 + C T UCEC 5330413 + 5330393 5330433 41 ATCACGCCATCTACTTTGCGATGCTGCTGGCTGGCGTGGGC ATCACGCCATCTACTTTGTGATGCTGCTGGCTGGCGTGGGC < 41bp 0.875084524732134 0.664617244283301 0.30001032 0.19897318 prediction 0.420934560897666 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5330413 chr7:5330411 nonsynonymous SNV 0.976 3 19 hm1A_associated_SNPs_14762 0 0 0 8 5330398 5330420 mRNA hsa-miR-103 SLC29A4 miRanda miRanda
2192 chr7 5330411 5330411 1 + C T UCEC 5330413 + 5330393 5330433 41 ATCACGCCATCTACTTTGCGATGCTGCTGGCTGGCGTGGGC ATCACGCCATCTACTTTGTGATGCTGCTGGCTGGCGTGGGC < 41bp 0.875084524732134 0.664617244283301 0.30001032 0.19897318 prediction 0.420934560897666 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5330413 chr7:5330411 nonsynonymous SNV 0.976 3 19 hm1A_associated_SNPs_14762 0 0 0 8 5330398 5330420 mRNA hsa-miR-107 SLC29A4 miRanda miRanda
2192 chr7 5330411 5330411 1 + C T UCEC 5330413 + 5330393 5330433 41 ATCACGCCATCTACTTTGCGATGCTGCTGGCTGGCGTGGGC ATCACGCCATCTACTTTGTGATGCTGCTGGCTGGCGTGGGC < 41bp 0.875084524732134 0.664617244283301 0.30001032 0.19897318 prediction 0.420934560897666 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5330413 chr7:5330411 nonsynonymous SNV 0.976 3 19 hm1A_associated_SNPs_14762 0 0 0 8 5330400 5330421 mRNA hsa-miR-15b SLC29A4 miRanda miRanda
2192 chr7 5330411 5330411 1 + C T UCEC 5330413 + 5330393 5330433 41 ATCACGCCATCTACTTTGCGATGCTGCTGGCTGGCGTGGGC ATCACGCCATCTACTTTGTGATGCTGCTGGCTGGCGTGGGC < 41bp 0.875084524732134 0.664617244283301 0.30001032 0.19897318 prediction 0.420934560897666 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5330413 chr7:5330411 nonsynonymous SNV 0.976 3 19 hm1A_associated_SNPs_14762 0 0 0 8 5330401 5330421 mRNA hsa-miR-195 SLC29A4 miRanda miRanda
2192 chr7 5330411 5330411 1 + C T UCEC 5330413 + 5330393 5330433 41 ATCACGCCATCTACTTTGCGATGCTGCTGGCTGGCGTGGGC ATCACGCCATCTACTTTGTGATGCTGCTGGCTGGCGTGGGC < 41bp 0.875084524732134 0.664617244283301 0.30001032 0.19897318 prediction 0.420934560897666 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5330413 chr7:5330411 nonsynonymous SNV 0.976 3 19 hm1A_associated_SNPs_14762 0 0 0 8 5330400 5330421 mRNA hsa-miR-424 SLC29A4 miRanda miRanda
2192 chr7 5330411 5330411 1 + C T UCEC 5330413 + 5330393 5330433 41 ATCACGCCATCTACTTTGCGATGCTGCTGGCTGGCGTGGGC ATCACGCCATCTACTTTGTGATGCTGCTGGCTGGCGTGGGC < 41bp 0.875084524732134 0.664617244283301 0.30001032 0.19897318 prediction 0.420934560897666 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5330413 chr7:5330411 nonsynonymous SNV 0.976 3 19 hm1A_associated_SNPs_14762 0 0 0 8 5330398 5330421 mRNA hsa-miR-497 SLC29A4 miRanda miRanda
2192 chr13 113803495 113803495 1 + C T SKCM 113803497 + 113803477 113803517 41 CCGGCAGTCCACCAGGCTCAAGATGCTGGAGGTGCCCTACG CCGGCAGTCCACCAGGCTTAAGATGCTGGAGGTGCCCTACG < 41bp 0.848631500797654 0.638254722407255 0.68717694 0.67277807 prediction 0.420753556780798 Functional Loss - F10 ENSG00000126218 CDS Human protein_coding chr13:113803497 chr13:113803495 synonymous SNV . 0 19 hm1A_associated_SNPs_14783 0 0 1 1 113803486 113803506 mRNA hsa-miR-338-3p F10 miRanda miRanda
2192 chr15 45713342 45713342 1 + C T LGG 45713344 + 45713324 45713364 41 AAAACCGTCGTTAAGTTGCAAGGACTTGGCTTTATATGAAA AAAACCGTCGTTAAGTTGTAAGGACTTGGCTTTATATGAAA < 41bp 0.710246780310237 0.413022664451676 0.06051576 0.05085069 prediction 0.420493560620473 Functional Loss - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45713344 chr15:45713342 synonymous SNV . 0 19 hm1A_associated_SNPs_14821 0 0 1 1 45713339 45713360 mRNA hsa-miR-340 SPATA5L1 miRanda miRanda
2192 chr9 1056731 1056731 1 + C G ESCA 1056733 + 1056713 1056753 41 TGGGACTTGAAGGGAGCACGAGTCCAGGATGGACTCAGTGC TGGGACTTGAAGGGAGCAGGAGTCCAGGATGGACTCAGTGC < 41bp 0.763562065298313 0.553371878306903 0.40167594 0.3025623 prediction 0.42038037398282 Functional Loss - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056733 chr9:1056731 nonsynonymous SNV 0.068 0 19 hm1A_associated_SNPs_14836 0 0 0 3 1056719 1056740 mRNA hsa-miR-149 DMRT2 miRanda miRanda
2192 chr9 1056731 1056731 1 + C G ESCA 1056733 + 1056713 1056753 41 TGGGACTTGAAGGGAGCACGAGTCCAGGATGGACTCAGTGC TGGGACTTGAAGGGAGCAGGAGTCCAGGATGGACTCAGTGC < 41bp 0.763562065298313 0.553371878306903 0.40167594 0.3025623 prediction 0.42038037398282 Functional Loss - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056733 chr9:1056731 nonsynonymous SNV 0.068 0 19 hm1A_associated_SNPs_14836 0 0 0 3 1056720 1056740 mRNA hsa-miR-378 DMRT2 miRanda miRanda
2192 chr9 1056731 1056731 1 + C G ESCA 1056733 + 1056713 1056753 41 TGGGACTTGAAGGGAGCACGAGTCCAGGATGGACTCAGTGC TGGGACTTGAAGGGAGCAGGAGTCCAGGATGGACTCAGTGC < 41bp 0.763562065298313 0.553371878306903 0.40167594 0.3025623 prediction 0.42038037398282 Functional Loss - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056733 chr9:1056731 nonsynonymous SNV 0.068 0 19 hm1A_associated_SNPs_14836 0 0 0 3 1056719 1056740 mRNA hsa-miR-422a DMRT2 miRanda miRanda
2192 chr1 77510188 77510188 1 + C A LUSC 77510190 + 77510170 77510210 41 CAAGGGCCAGGTCTACAACAACCTGCATCTCCTGAGCCAGG CAAGGGCCAGGTCTACAAAAACCTGCATCTCCTGAGCCAGG < 41bp 0.766266962756917 0.556127820370128 0.16398463 0.16967666 prediction 0.420278284773577 Functional Loss - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77510190 chr1:77510188 nonsynonymous SNV 1.000 1 19 hm1A_associated_SNPs_14849 0 0 0 2 77510186 77510208 mRNA hsa-miR-24 ST6GALNAC5 miRanda miRanda
2192 chr1 77510188 77510188 1 + C A LUSC 77510190 + 77510170 77510210 41 CAAGGGCCAGGTCTACAACAACCTGCATCTCCTGAGCCAGG CAAGGGCCAGGTCTACAAAAACCTGCATCTCCTGAGCCAGG < 41bp 0.766266962756917 0.556127820370128 0.16398463 0.16967666 prediction 0.420278284773577 Functional Loss - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77510190 chr1:77510188 nonsynonymous SNV 1.000 1 19 hm1A_associated_SNPs_14849 0 0 0 2 77510188 77510210 mRNA hsa-miR-149 ST6GALNAC5 miRanda miRanda
2192 chr13 113783802 113783802 1 + C T COAD 113783804 + 113783784 113783824 41 AGGCCAACAACATCCTGGCGAGGGTCACGAGGGCCAATTCC AGGCCAACAACATCCTGGTGAGGGTCACGAGGGCCAATTCC < 41bp 0.801115413471759 0.591097727661789 0.19860986 0.14905882 prediction 0.420035371619939 Functional Loss - F10 ENSG00000126218 CDS Human protein_coding chr13:113783804 chr13:113783802 nonsynonymous SNV 0.006 1 19 hm1A_associated_SNPs_14878 0 0 1 1 113783800 113783820 mRNA hsa-miR-328 F10 miRanda miRanda
2192 chrX 35969413 35969413 1 + T C DLBC 35969412 + 35969392 35969432 41 TAAACATGCACGTGTATACAATAATAGCCCAGAGCCCATAA TAAACATGCACGTGTATACAACAATAGCCCAGAGCCCATAA < 41bp 0.712948603321691 0.503043917029596 0.050082475 0.052785426 prediction 0.419809372584189 Functional Loss - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35969412 chrX:35969413 synonymous SNV . 0 22 hm1A_associated_SNPs_14904 0 0 0 2 35969405 35969426 mRNA hsa-miR-330-5p CXorf22 miRanda miRanda
2192 chrX 35969413 35969413 1 + T C DLBC 35969412 + 35969392 35969432 41 TAAACATGCACGTGTATACAATAATAGCCCAGAGCCCATAA TAAACATGCACGTGTATACAACAATAGCCCAGAGCCCATAA < 41bp 0.712948603321691 0.503043917029596 0.050082475 0.052785426 prediction 0.419809372584189 Functional Loss - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35969412 chrX:35969413 synonymous SNV . 0 22 hm1A_associated_SNPs_14904 0 0 0 2 35969407 35969426 mRNA hsa-miR-326 CXorf22 miRanda miRanda
2192 chr10 1118121 1118121 1 + C T UCEC 1118123 + 1118103 1118143 41 CAGAAAGCGCAAGTTGTTCGACTGCTCGCCAAACAAAACAG CAGAAAGCGCAAGTTGTTTGACTGCTCGCCAAACAAAACAG < 41bp 0.808064276773066 0.598159951233294 0.77523875 0.2649842 prediction 0.419808651079543 Functional Loss - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1118123 chr10:1118121 nonsynonymous SNV 0.938 1 19 hm1A_associated_SNPs_14905 0 0 1 1 1118109 1118129 mRNA hsa-miR-503 WDR37 miRanda miRanda
2192 chr17 58740467 58740467 1 + C T HNSC 58740469 + 58740449 58740489 41 GTTTCAGCTGAGATAGCTCGAGAGAATGTCCAAGGTGTAGT GTTTCAGCTGAGATAGCTTGAGAGAATGTCCAAGGTGTAGT < 41bp 0.709849153512569 0.411649564820205 0.1928089 0.13111031 prediction 0.419698307025139 Functional Loss - PPM1D ENSG00000170836 CDS Human protein_coding chr17:58740469 chr17:58740467 stopgain 0.965 0 19 hm1A_associated_SNPs_14925 0 0 1 1 58740467 58740490 mRNA hsa-miR-329 PPM1D miRanda miRanda
2192 chr11 117023230 117023230 1 + C T UCEC 117023232 + 117023212 117023252 41 GATATTCAAGGAGATGACCGATGGATGTCTCAGGTAAAAGG GATATTCAAGGAGATGACTGATGGATGTCTCAGGTAAAAGG < 41bp 0.847939649328898 0.6381799111559 0.19059142 0.09818038 prediction 0.419519476345995 Functional Loss - PAFAH1B2 ENSG00000168092 CDS Human protein_coding chr11:117023232 chr11:117023230 stopgain 0.999 1 19 hm1A_associated_SNPs_14942 0 0 1 1 117023230 117023244 mRNA hsa-miR-218 PAFAH1B2 miRanda miRanda
2192 chr3 51743392 51743392 1 + T G SKCM 51743391 + 51743371 51743411 41 CTCTTATGCGACCCATGGTGATGCTCCCACTGCCATCACTG CTCTTATGCGACCCATGGTGAGGCTCCCACTGCCATCACTG < 41bp 0.734390445322258 0.524663990789029 0.37053198 0.37422758 prediction 0.419452909066457 Functional Loss - GRM2 ENSG00000164082 CDS Human protein_coding chr3:51743391 chr3:51743392 nonsynonymous SNV 1.000 2 22 hm1A_associated_SNPs_14955 0 0 1 4 51743384 51743405 mRNA hsa-miR-34a GRM2 miRanda miRanda
2192 chr3 51743392 51743392 1 + T G SKCM 51743391 + 51743371 51743411 41 CTCTTATGCGACCCATGGTGATGCTCCCACTGCCATCACTG CTCTTATGCGACCCATGGTGAGGCTCCCACTGCCATCACTG < 41bp 0.734390445322258 0.524663990789029 0.37053198 0.37422758 prediction 0.419452909066457 Functional Loss - GRM2 ENSG00000164082 CDS Human protein_coding chr3:51743391 chr3:51743392 nonsynonymous SNV 1.000 2 22 hm1A_associated_SNPs_14955 0 0 1 4 51743383 51743405 mRNA hsa-miR-34c-5p GRM2 miRanda miRanda
2192 chr3 51743392 51743392 1 + T G SKCM 51743391 + 51743371 51743411 41 CTCTTATGCGACCCATGGTGATGCTCCCACTGCCATCACTG CTCTTATGCGACCCATGGTGAGGCTCCCACTGCCATCACTG < 41bp 0.734390445322258 0.524663990789029 0.37053198 0.37422758 prediction 0.419452909066457 Functional Loss - GRM2 ENSG00000164082 CDS Human protein_coding chr3:51743391 chr3:51743392 nonsynonymous SNV 1.000 2 22 hm1A_associated_SNPs_14955 0 0 1 4 51743382 51743405 mRNA hsa-miR-449a GRM2 miRanda miRanda
2192 chr3 51743392 51743392 1 + T G SKCM 51743391 + 51743371 51743411 41 CTCTTATGCGACCCATGGTGATGCTCCCACTGCCATCACTG CTCTTATGCGACCCATGGTGAGGCTCCCACTGCCATCACTG < 41bp 0.734390445322258 0.524663990789029 0.37053198 0.37422758 prediction 0.419452909066457 Functional Loss - GRM2 ENSG00000164082 CDS Human protein_coding chr3:51743391 chr3:51743392 nonsynonymous SNV 1.000 2 22 hm1A_associated_SNPs_14955 0 0 1 4 51743382 51743405 mRNA hsa-miR-449b GRM2 miRanda miRanda
2192 chr7 123516864 123516864 1 + C A LUAD 123516866 + 123516846 123516886 41 TTTAGGGAGCTACATAGCCAATGTGACCAGAGCTGCTGAGG TTTAGGGAGCTACATAGCAAATGTGACCAGAGCTGCTGAGG < 41bp 0.709638682392059 0.419092843990362 0.18307006 0.16380644 prediction 0.419277364784118 Functional Loss - HYAL4 ENSG00000106302 CDS Human protein_coding chr7:123516866 chr7:123516864 synonymous SNV . 0 19 hm1A_associated_SNPs_14971 0 0 0 2 123516851 123516872 mRNA hsa-miR-23a HYAL4 miRanda miRanda
2192 chr7 123516864 123516864 1 + C A LUAD 123516866 + 123516846 123516886 41 TTTAGGGAGCTACATAGCCAATGTGACCAGAGCTGCTGAGG TTTAGGGAGCTACATAGCAAATGTGACCAGAGCTGCTGAGG < 41bp 0.709638682392059 0.419092843990362 0.18307006 0.16380644 prediction 0.419277364784118 Functional Loss - HYAL4 ENSG00000106302 CDS Human protein_coding chr7:123516866 chr7:123516864 synonymous SNV . 0 19 hm1A_associated_SNPs_14971 0 0 0 2 123516852 123516872 mRNA hsa-miR-23b HYAL4 miRanda miRanda
2192 chr2 37468805 37468805 1 + C T ESCA 37468807 + 37468787 37468827 41 CAAAAATTAAGTGAGATTCAAGCATTGACACTGACTAAAGA CAAAAATTAAGTGAGATTTAAGCATTGACACTGACTAAAGA < 41bp 0.855047118281726 0.645442070524322 0.080950946 0.07072717 prediction 0.419210095514808 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37468807 chr2:37468805 stopgain 0.985 1 19 hm1A_associated_SNPs_14980 0 0 1 5 37468784 37468805 mRNA hsa-miR-216a C2orf56 miRanda miRanda
2192 chr2 37468805 37468805 1 + C T ESCA 37468807 + 37468787 37468827 41 CAAAAATTAAGTGAGATTCAAGCATTGACACTGACTAAAGA CAAAAATTAAGTGAGATTTAAGCATTGACACTGACTAAAGA < 41bp 0.855047118281726 0.645442070524322 0.080950946 0.07072717 prediction 0.419210095514808 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37468807 chr2:37468805 stopgain 0.985 1 19 hm1A_associated_SNPs_14980 0 0 1 5 37468797 37468819 mRNA hsa-miR-130a C2orf56 miRanda miRanda
2192 chr2 37468805 37468805 1 + C T ESCA 37468807 + 37468787 37468827 41 CAAAAATTAAGTGAGATTCAAGCATTGACACTGACTAAAGA CAAAAATTAAGTGAGATTTAAGCATTGACACTGACTAAAGA < 41bp 0.855047118281726 0.645442070524322 0.080950946 0.07072717 prediction 0.419210095514808 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37468807 chr2:37468805 stopgain 0.985 1 19 hm1A_associated_SNPs_14980 0 0 1 5 37468796 37468819 mRNA hsa-miR-130b C2orf56 miRanda miRanda
2192 chr2 37468805 37468805 1 + C T ESCA 37468807 + 37468787 37468827 41 CAAAAATTAAGTGAGATTCAAGCATTGACACTGACTAAAGA CAAAAATTAAGTGAGATTTAAGCATTGACACTGACTAAAGA < 41bp 0.855047118281726 0.645442070524322 0.080950946 0.07072717 prediction 0.419210095514808 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37468807 chr2:37468805 stopgain 0.985 1 19 hm1A_associated_SNPs_14980 0 0 1 5 37468794 37468819 mRNA hsa-miR-301b C2orf56 miRanda miRanda
2192 chr2 37468805 37468805 1 + C T ESCA 37468807 + 37468787 37468827 41 CAAAAATTAAGTGAGATTCAAGCATTGACACTGACTAAAGA CAAAAATTAAGTGAGATTTAAGCATTGACACTGACTAAAGA < 41bp 0.855047118281726 0.645442070524322 0.080950946 0.07072717 prediction 0.419210095514808 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37468807 chr2:37468805 stopgain 0.985 1 19 hm1A_associated_SNPs_14980 0 0 1 5 37468784 37468805 mRNA hsa-miR-216b C2orf56 miRanda miRanda
2192 chr4 175237327 175237327 1 + C T UCEC 175237329 + 175237309 175237349 41 CTTCACAGACAGAAAAAGCGAAGTAGAGAGGCCAGCAAGTA CTTCACAGACAGAAAAAGTGAAGTAGAGAGGCCAGCAAGTA < 41bp 0.774415815389914 0.564852670346933 0.14962044 0.1253998 prediction 0.419126290085964 Functional Loss - CEP44 ENSG00000164118 CDS Human protein_coding chr4:175237329 chr4:175237327 synonymous SNV . 0 19 hm1A_associated_SNPs_14989 0 0 0 1 175237320 175237343 mRNA hsa-miR-328 KIAA1712 miRanda miRanda
2192 chr11 113848626 113848626 1 + C G LUSC 113848628 + 113848608 113848648 41 ATCCATTGACGTCATTGTCTATGCCATCCTCAACGTGGTGA ATCCATTGACGTCATTGTGTATGCCATCCTCAACGTGGTGA < 41bp 0.744208954814308 0.534688768282016 0.2859794 0.24165216 prediction 0.419040373064585 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113848628 chr11:113848626 synonymous SNV . 0 19 hm1A_associated_SNPs_14997 0 0 0 1 113848612 113848633 mRNA hsa-miR-31 HTR3A miRanda miRanda
2192 chr8 48586428 48586428 1 + C T COAD 48586430 + 48586410 48586450 41 ACTTGGAGTTCACCATGTCGAAGGCAAGACAGTTGGAAGGG ACTTGGAGTTCACCATGTTGAAGGCAAGACAGTTGGAAGGG < 41bp 0.709497768189655 0.488282217672966 0.31941158 0.24320382 prediction 0.418995536379311 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48586430 chr8:48586428 nonsynonymous SNV 0.004 0 19 hm1A_associated_SNPs_15002 0 0 1 1 48586421 48586440 mRNA hsa-miR-431 KIAA0146 miRanda miRanda
2192 chr1 227076667 227076667 1 + T G STAD 227076666 + 227076646 227076686 41 AGCAGGCCTACCTCATCATGATCAGTGCGCTCATGGCCCTA AGCAGGCCTACCTCATCATGAGCAGTGCGCTCATGGCCCTA < 41bp 0.709460963730099 0.497200529411707 0.16942328 0.15900946 prediction 0.418921927460199 Functional Loss - PSEN2 ENSG00000143801 CDS Human protein_coding chr1:227076666 chr1:227076667 nonsynonymous SNV 0.944 5 22 hm1A_associated_SNPs_15008 0 0 1 1 227076646 227076667 mRNA hsa-miR-433 PSEN2 miRanda miRanda
2192 chr1 52135135 52135135 1 + C T COAD 52135137 + 52135117 52135157 41 TGGTATAGACGATGAGGACGACAGCACCTTCACAATAACTG TGGTATAGACGATGAGGATGACAGCACCTTCACAATAACTG < 41bp 0.800464909114838 0.591069971849 0.30099547 0.16085559 prediction 0.418789874531677 Functional Loss - OSBPL9 ENSG00000117859 CDS Human protein_coding chr1:52135137 chr1:52135135 synonymous SNV . 0 19 hm1A_associated_SNPs_15026 0 0 1 2 52135126 52135147 mRNA hsa-miR-18a OSBPL9 miRanda miRanda
2192 chr1 52135135 52135135 1 + C T COAD 52135137 + 52135117 52135157 41 TGGTATAGACGATGAGGACGACAGCACCTTCACAATAACTG TGGTATAGACGATGAGGATGACAGCACCTTCACAATAACTG < 41bp 0.800464909114838 0.591069971849 0.30099547 0.16085559 prediction 0.418789874531677 Functional Loss - OSBPL9 ENSG00000117859 CDS Human protein_coding chr1:52135137 chr1:52135135 synonymous SNV . 0 19 hm1A_associated_SNPs_15026 0 0 1 2 52135126 52135147 mRNA hsa-miR-18b OSBPL9 miRanda miRanda
2192 chr4 128608910 128608910 1 + C T CESC 128608912 + 128608892 128608932 41 AAAGAGCACTTCAGCCTGCGAAACTGCATTCCAGCGCCAGT AAAGAGCACTTCAGCCTGTGAAACTGCATTCCAGCGCCAGT < 41bp 0.825970393937128 0.616581084219525 0.14662978 0.07733059 prediction 0.418778619435206 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128608912 chr4:128608910 nonsynonymous SNV 0.039 0 19 hm1A_associated_SNPs_15029 0 0 0 1 128608896 128608910 mRNA hsa-miR-125a-3p INTU miRanda miRanda
2192 chr12 10167883 10167883 1 + C T HNSC 10167885 + 10167865 10167905 41 CCATGTCCTAAGATGTGGCAATGGTACCAAAATAGTTGCTA CCATGTCCTAAGATGTGGTAATGGTACCAAAATAGTTGCTA < 41bp 0.709231615390565 0.427375064163533 0.07268733 0.0704492 prediction 0.41846323078113 Functional Loss - CLEC12B ENSG00000256660 CDS Human protein_coding chr12:10167885 chr12:10167883 stopgain 0.919 0 19 hm1A_associated_SNPs_15061 0 0 0 1 10167862 10167887 mRNA hsa-miR-367 CLEC12B miRanda miRanda
2192 chr8 32621590 32621590 1 + C T LIHC 32621592 + 32621572 32621612 41 TGAAACGACCCAAGAGTACGAGCCAGCCCAAGAGCCTGTTA TGAAACGACCCAAGAGTATGAGCCAGCCCAAGAGCCTGTTA < 41bp 0.761265252229917 0.552165123317664 0.66438115 0.48636198 prediction 0.418200257824506 Functional Loss - NRG1 ENSG00000157168 CDS Human protein_coding chr8:32621592 chr8:32621590 synonymous SNV . 0 19 hm1A_associated_SNPs_15093 0 0 0 1 32621576 32621598 mRNA hsa-miR-149 NRG1 miRanda miRanda
2192 chr11 13393792 13393792 1 + C T UCS 13393794 + 13393774 13393814 41 GATGGGGCTGGATGAAGACAACGAACCAGACAATGAGGGGT GATGGGGCTGGATGAAGATAACGAACCAGACAATGAGGGGT < 41bp 0.805163585694122 0.596084434095939 0.30525258 0.29183754 prediction 0.418158303196366 Functional Loss - ARNTL ENSG00000133794 CDS Human protein_coding chr11:13393794 chr11:13393792 synonymous SNV . 0 19 hm1A_associated_SNPs_15101 0 0 0 1 13393777 13393797 mRNA hsa-miR-187 ARNTL miRanda miRanda
2192 chr9 34657072 34657072 1 + C T UCEC 34657074 + 34657054 34657094 41 CTCCTGCCAAGCAGCCGACTATGAGAACTTCTCTTGCACTT CTCCTGCCAAGCAGCCGATTATGAGAACTTCTCTTGCACTT < 41bp 0.860095443208854 0.651196779169833 0.48959786 0.3837972 prediction 0.417797328078042 Functional Loss - IL11RA ENSG00000137070;ENSG00000258728 CDS Human other chr9:34657074 chr9:34657072 synonymous SNV . 0 19 hm1A_associated_SNPs_15136 0 0 1 3 34657071 34657094 mRNA hsa-miR-301a IL11RA miRanda miRanda
2192 chr9 34657072 34657072 1 + C T UCEC 34657074 + 34657054 34657094 41 CTCCTGCCAAGCAGCCGACTATGAGAACTTCTCTTGCACTT CTCCTGCCAAGCAGCCGATTATGAGAACTTCTCTTGCACTT < 41bp 0.860095443208854 0.651196779169833 0.48959786 0.3837972 prediction 0.417797328078042 Functional Loss - IL11RA ENSG00000137070;ENSG00000258728 CDS Human other chr9:34657074 chr9:34657072 synonymous SNV . 0 19 hm1A_associated_SNPs_15136 0 0 1 3 34657069 34657094 mRNA hsa-miR-454 IL11RA miRanda miRanda
2192 chr9 34657072 34657072 1 + C T UCEC 34657074 + 34657054 34657094 41 CTCCTGCCAAGCAGCCGACTATGAGAACTTCTCTTGCACTT CTCCTGCCAAGCAGCCGATTATGAGAACTTCTCTTGCACTT < 41bp 0.860095443208854 0.651196779169833 0.48959786 0.3837972 prediction 0.417797328078042 Functional Loss - IL11RA ENSG00000137070;ENSG00000258728 CDS Human other chr9:34657074 chr9:34657072 synonymous SNV . 0 19 hm1A_associated_SNPs_15136 0 0 1 3 34657071 34657094 mRNA hsa-miR-301b IL11RA miRanda miRanda
2192 chr4 3257983 3257983 1 + C G rs362286 3257985 + 3257965 3258005 41 CACTCTCCAGTGTCGTTACTATCAATGATACTTGACGTGGC CACTCTCCAGTGTCGTTAGTATCAATGATACTTGACGTGGC < 41bp 0.708768371054348 0.452996389549898 0.16200134 0.11598614 prediction 0.417536742108696 Functional Loss - MSANTD1 ENSG00000188981 UTR3 Human protein_coding chr4:3257985 chr4:3257983 . . 0 19 hm1A_associated_SNPs_15169 0 0 1 3 3257980 3258000 mRNA hsa-miR-26a C4orf44 miRanda miRanda
2192 chr4 3257983 3257983 1 + C G rs362286 3257985 + 3257965 3258005 41 CACTCTCCAGTGTCGTTACTATCAATGATACTTGACGTGGC CACTCTCCAGTGTCGTTAGTATCAATGATACTTGACGTGGC < 41bp 0.708768371054348 0.452996389549898 0.16200134 0.11598614 prediction 0.417536742108696 Functional Loss - MSANTD1 ENSG00000188981 UTR3 Human protein_coding chr4:3257985 chr4:3257983 . . 0 19 hm1A_associated_SNPs_15169 0 0 1 3 3257981 3258000 mRNA hsa-miR-26b C4orf44 miRanda miRanda
2192 chr4 3257983 3257983 1 + C G rs362286 3257985 + 3257965 3258005 41 CACTCTCCAGTGTCGTTACTATCAATGATACTTGACGTGGC CACTCTCCAGTGTCGTTAGTATCAATGATACTTGACGTGGC < 41bp 0.708768371054348 0.452996389549898 0.16200134 0.11598614 prediction 0.417536742108696 Functional Loss - MSANTD1 ENSG00000188981 UTR3 Human protein_coding chr4:3257985 chr4:3257983 . . 0 19 hm1A_associated_SNPs_15169 0 0 1 3 3257982 3258000 mRNA hsa-miR-1297 C4orf44 miRanda miRanda
2192 chr14 91655360 91655360 1 + T G STAD 91655359 + 91655339 91655379 41 CACCACTGGGTTCCCCACACATTTCAATCATGAGCCTCCAG CACCACTGGGTTCCCCACACAGTTCAATCATGAGCCTCCAG < 41bp 0.727282935508282 0.51860723746083 0.22474879 0.24035585 prediction 0.417351396094904 Functional Loss - C14orf159 ENSG00000133943 CDS Human protein_coding chr14:91655359 chr14:91655360 nonsynonymous SNV 0.026 3 22 hm1A_associated_SNPs_15185 0 0 1 2 91655342 91655365 mRNA hsa-miR-203 C14orf159 miRanda miRanda
2192 chr14 91655360 91655360 1 + T G STAD 91655359 + 91655339 91655379 41 CACCACTGGGTTCCCCACACATTTCAATCATGAGCCTCCAG CACCACTGGGTTCCCCACACAGTTCAATCATGAGCCTCCAG < 41bp 0.727282935508282 0.51860723746083 0.22474879 0.24035585 prediction 0.417351396094904 Functional Loss - C14orf159 ENSG00000133943 CDS Human protein_coding chr14:91655359 chr14:91655360 nonsynonymous SNV 0.026 3 22 hm1A_associated_SNPs_15185 0 0 1 2 91655351 91655372 mRNA hsa-miR-433 C14orf159 miRanda miRanda
2192 chr12 72179507 72179507 1 + C G rs186680035 72179509 + 72179489 72179529 41 ACTGTGGATCATTGCCCTCAACATGAAGACTGCCATATTCC ACTGTGGATCATTGCCCTGAACATGAAGACTGCCATATTCC < 41bp 0.763892714933301 0.55528670939208 0.053682506 0.04103604 prediction 0.417212011082442 Functional Loss - RAB21 ENSG00000080371 UTR3 Human protein_coding chr12:72179509 chr12:72179507 . . 0 19 hm1A_associated_SNPs_15203 0 0 1 5 72179502 72179523 mRNA hsa-miR-34a RAB21 miRanda miRanda
2192 chr12 72179507 72179507 1 + C G rs186680035 72179509 + 72179489 72179529 41 ACTGTGGATCATTGCCCTCAACATGAAGACTGCCATATTCC ACTGTGGATCATTGCCCTGAACATGAAGACTGCCATATTCC < 41bp 0.763892714933301 0.55528670939208 0.053682506 0.04103604 prediction 0.417212011082442 Functional Loss - RAB21 ENSG00000080371 UTR3 Human protein_coding chr12:72179509 chr12:72179507 . . 0 19 hm1A_associated_SNPs_15203 0 0 1 5 72179504 72179525 mRNA hsa-miR-183 RAB21 miRanda miRanda
2192 chr12 72179507 72179507 1 + C G rs186680035 72179509 + 72179489 72179529 41 ACTGTGGATCATTGCCCTCAACATGAAGACTGCCATATTCC ACTGTGGATCATTGCCCTGAACATGAAGACTGCCATATTCC < 41bp 0.763892714933301 0.55528670939208 0.053682506 0.04103604 prediction 0.417212011082442 Functional Loss - RAB21 ENSG00000080371 UTR3 Human protein_coding chr12:72179509 chr12:72179507 . . 0 19 hm1A_associated_SNPs_15203 0 0 1 5 72179501 72179523 mRNA hsa-miR-34c-5p RAB21 miRanda miRanda
2192 chr12 72179507 72179507 1 + C G rs186680035 72179509 + 72179489 72179529 41 ACTGTGGATCATTGCCCTCAACATGAAGACTGCCATATTCC ACTGTGGATCATTGCCCTGAACATGAAGACTGCCATATTCC < 41bp 0.763892714933301 0.55528670939208 0.053682506 0.04103604 prediction 0.417212011082442 Functional Loss - RAB21 ENSG00000080371 UTR3 Human protein_coding chr12:72179509 chr12:72179507 . . 0 19 hm1A_associated_SNPs_15203 0 0 1 5 72179500 72179523 mRNA hsa-miR-449a RAB21 miRanda miRanda
2192 chr12 72179507 72179507 1 + C G rs186680035 72179509 + 72179489 72179529 41 ACTGTGGATCATTGCCCTCAACATGAAGACTGCCATATTCC ACTGTGGATCATTGCCCTGAACATGAAGACTGCCATATTCC < 41bp 0.763892714933301 0.55528670939208 0.053682506 0.04103604 prediction 0.417212011082442 Functional Loss - RAB21 ENSG00000080371 UTR3 Human protein_coding chr12:72179509 chr12:72179507 . . 0 19 hm1A_associated_SNPs_15203 0 0 1 5 72179500 72179523 mRNA hsa-miR-449b RAB21 miRanda miRanda
2192 chr8 96047721 96047721 1 + C T PRAD 96047723 + 96047703 96047743 41 AAAACAATTGGACTGATGCGAATGCAGTTTTGGAAAAAAAC AAAACAATTGGACTGATGTGAATGCAGTTTTGGAAAAAAAC < 41bp 0.85466627935053 0.646208457444781 0.13352749 0.084199995 prediction 0.416915643811497 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96047723 chr8:96047721 stopgain 0.998 1 19 hm1A_associated_SNPs_15247 0 0 1 1 96047705 96047731 mRNA hsa-miR-217 C8orf38 miRanda miRanda
2192 chr4 39482578 39482578 1 + C T UCEC 39482580 + 39482560 39482600 41 GAAAACAGGGAAGTGCCACAAGACTGCTAGCTCACTCCGAT GAAAACAGGGAAGTGCCATAAGACTGCTAGCTCACTCCGAT < 41bp 0.708294207742549 0.472387489025422 0.2175766 0.27789134 prediction 0.416588415485097 Functional Loss - LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482580 chr4:39482578 . . 0 19 hm1A_associated_SNPs_15291 0 0 0 3 39482574 39482596 mRNA hsa-miR-28-5p LOC401127 miRanda miRanda
2192 chr4 39482578 39482578 1 + C T UCEC 39482580 + 39482560 39482600 41 GAAAACAGGGAAGTGCCACAAGACTGCTAGCTCACTCCGAT GAAAACAGGGAAGTGCCATAAGACTGCTAGCTCACTCCGAT < 41bp 0.708294207742549 0.472387489025422 0.2175766 0.27789134 prediction 0.416588415485097 Functional Loss - LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482580 chr4:39482578 . . 0 19 hm1A_associated_SNPs_15291 0 0 0 3 39482570 39482592 mRNA hsa-miR-497 LOC401127 miRanda miRanda
2192 chr4 39482578 39482578 1 + C T UCEC 39482580 + 39482560 39482600 41 GAAAACAGGGAAGTGCCACAAGACTGCTAGCTCACTCCGAT GAAAACAGGGAAGTGCCATAAGACTGCTAGCTCACTCCGAT < 41bp 0.708294207742549 0.472387489025422 0.2175766 0.27789134 prediction 0.416588415485097 Functional Loss - LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482580 chr4:39482578 . . 0 19 hm1A_associated_SNPs_15291 0 0 0 3 39482574 39482596 mRNA hsa-miR-708 LOC401127 miRanda miRanda
2192 chrX 80457737 80457737 1 + C T BRCA 80457739 + 80457719 80457759 41 TTGCATCTTCCTCTGGCTCTACAGCGGTAAGGAGAGTGGGG TTGCATCTTCCTCTGGCTTTACAGCGGTAAGGAGAGTGGGG < 41bp 0.773963657302558 0.565717381260921 0.11130512 0.08492577 prediction 0.416492552083274 Functional Loss - SH3BGRL ENSG00000131171 CDS Human protein_coding chrX:80457739 chrX:80457737 nonsynonymous SNV 0.998 2 19 hm1A_associated_SNPs_15302 0 0 1 3 80457732 80457744 mRNA hsa-miR-320a SH3BGRL miRanda miRanda
2192 chrX 80457737 80457737 1 + C T BRCA 80457739 + 80457719 80457759 41 TTGCATCTTCCTCTGGCTCTACAGCGGTAAGGAGAGTGGGG TTGCATCTTCCTCTGGCTTTACAGCGGTAAGGAGAGTGGGG < 41bp 0.773963657302558 0.565717381260921 0.11130512 0.08492577 prediction 0.416492552083274 Functional Loss - SH3BGRL ENSG00000131171 CDS Human protein_coding chrX:80457739 chrX:80457737 nonsynonymous SNV 0.998 2 19 hm1A_associated_SNPs_15302 0 0 1 3 80457732 80457744 mRNA hsa-miR-320b SH3BGRL miRanda miRanda
2192 chrX 80457737 80457737 1 + C T BRCA 80457739 + 80457719 80457759 41 TTGCATCTTCCTCTGGCTCTACAGCGGTAAGGAGAGTGGGG TTGCATCTTCCTCTGGCTTTACAGCGGTAAGGAGAGTGGGG < 41bp 0.773963657302558 0.565717381260921 0.11130512 0.08492577 prediction 0.416492552083274 Functional Loss - SH3BGRL ENSG00000131171 CDS Human protein_coding chrX:80457739 chrX:80457737 nonsynonymous SNV 0.998 2 19 hm1A_associated_SNPs_15302 0 0 1 3 80457737 80457744 mRNA hsa-miR-320c SH3BGRL miRanda miRanda
2192 chr19 3293399 3293399 1 + C T SKCM 3293401 + 3293381 3293421 41 GATCGGCATGAAGAGGCTCAAAGTCCAGCTGAAGCGGCCCA GATCGGCATGAAGAGGCTTAAAGTCCAGCTGAAGCGGCCCA < 41bp 0.864642024839255 0.656419295238143 0.5682015 0.43694636 prediction 0.416445459202223 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3293401 chr19:3293399 synonymous SNV . 0 19 hm1A_associated_SNPs_15312 0 0 0 2 3293389 3293409 mRNA hsa-miR-378 CELF5 miRanda miRanda
2192 chr19 3293399 3293399 1 + C T SKCM 3293401 + 3293381 3293421 41 GATCGGCATGAAGAGGCTCAAAGTCCAGCTGAAGCGGCCCA GATCGGCATGAAGAGGCTTAAAGTCCAGCTGAAGCGGCCCA < 41bp 0.864642024839255 0.656419295238143 0.5682015 0.43694636 prediction 0.416445459202223 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3293401 chr19:3293399 synonymous SNV . 0 19 hm1A_associated_SNPs_15312 0 0 0 2 3293388 3293409 mRNA hsa-miR-422a CELF5 miRanda miRanda
2192 chr22 31530031 31530031 1 + C T UCEC 31530033 + 31530013 31530053 41 AGTCCTGGCAAGTCCAAGCGACACCGCAGCCGCAGCCCGGG AGTCCTGGCAAGTCCAAGTGACACCGCAGCCGCAGCCCGGG < 41bp 0.845859631998152 0.637872325544805 0.36395884 0.25751567 prediction 0.415974612906693 Functional Loss - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31530033 chr22:31530031 stopgain 0.992 0 19 hm1A_associated_SNPs_15377 0 0 0 1 31530015 31530036 mRNA hsa-miR-218 INPP5J miRanda miRanda
2192 chr10 129839226 129839226 1 + C T ACC 129839228 + 129839208 129839248 41 GGGCAACGAGACCACTGCCGACAGCAACGAGACAACCACGA GGGCAACGAGACCACTGCTGACAGCAACGAGACAACCACGA < 41bp 0.70795908201825 0.490928245519082 0.5396452 0.41762063 prediction 0.415918164036499 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129839228 chr10:129839226 synonymous SNV . 0 19 hm1A_associated_SNPs_15387 0 0 0 5 129839206 129839227 mRNA hsa-miR-34a PTPRE miRanda miRanda
2192 chr10 129839226 129839226 1 + C T ACC 129839228 + 129839208 129839248 41 GGGCAACGAGACCACTGCCGACAGCAACGAGACAACCACGA GGGCAACGAGACCACTGCTGACAGCAACGAGACAACCACGA < 41bp 0.70795908201825 0.490928245519082 0.5396452 0.41762063 prediction 0.415918164036499 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129839228 chr10:129839226 synonymous SNV . 0 19 hm1A_associated_SNPs_15387 0 0 0 5 129839203 129839227 mRNA hsa-miR-34c-5p PTPRE miRanda miRanda
2192 chr10 129839226 129839226 1 + C T ACC 129839228 + 129839208 129839248 41 GGGCAACGAGACCACTGCCGACAGCAACGAGACAACCACGA GGGCAACGAGACCACTGCTGACAGCAACGAGACAACCACGA < 41bp 0.70795908201825 0.490928245519082 0.5396452 0.41762063 prediction 0.415918164036499 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129839228 chr10:129839226 synonymous SNV . 0 19 hm1A_associated_SNPs_15387 0 0 0 5 129839223 129839243 mRNA hsa-miR-375 PTPRE miRanda miRanda
2192 chr10 129839226 129839226 1 + C T ACC 129839228 + 129839208 129839248 41 GGGCAACGAGACCACTGCCGACAGCAACGAGACAACCACGA GGGCAACGAGACCACTGCTGACAGCAACGAGACAACCACGA < 41bp 0.70795908201825 0.490928245519082 0.5396452 0.41762063 prediction 0.415918164036499 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129839228 chr10:129839226 synonymous SNV . 0 19 hm1A_associated_SNPs_15387 0 0 0 5 129839206 129839227 mRNA hsa-miR-449a PTPRE miRanda miRanda
2192 chr10 129839226 129839226 1 + C T ACC 129839228 + 129839208 129839248 41 GGGCAACGAGACCACTGCCGACAGCAACGAGACAACCACGA GGGCAACGAGACCACTGCTGACAGCAACGAGACAACCACGA < 41bp 0.70795908201825 0.490928245519082 0.5396452 0.41762063 prediction 0.415918164036499 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129839228 chr10:129839226 synonymous SNV . 0 19 hm1A_associated_SNPs_15387 0 0 0 5 129839206 129839227 mRNA hsa-miR-449b PTPRE miRanda miRanda
2192 chr1 79002163 79002163 1 + C T GBM 79002165 + 79002145 79002185 41 ACAACACTTTTTGCTCTCCGAATGGCAACATGGAATCAAAT ACAACACTTTTTGCTCTCTGAATGGCAACATGGAATCAAAT < 41bp 0.707878682124049 0.400847114575207 0.092742056 0.04452154 prediction 0.415757364248098 Functional Loss - PTGFR ENSG00000122420 CDS Human protein_coding chr1:79002165 chr1:79002163 stopgain 0.982 1 19 hm1A_associated_SNPs_15407 0 0 0 1 79002153 79002176 mRNA hsa-miR-455-5p PTGFR miRanda miRanda
2192 chr15 80473430 80473430 1 + C T UCEC 80473432 + 80473412 80473452 41 AACTGTCGTGGAAGGGAACGAAGCCCATAGACCTGGGGAAT AACTGTCGTGGAAGGGAATGAAGCCCATAGACCTGGGGAAT < 41bp 0.860036637577473 0.652174070986741 0.5772787 0.21332118 prediction 0.415725133181464 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80473432 chr15:80473430 nonsynonymous SNV 0.132 5 19 hm1A_associated_SNPs_15411 0 0 1 1 80473415 80473440 mRNA hsa-miR-135b FAH miRanda miRanda
2192 chr17 76399727 76399727 1 + T C UCEC 76399726 + 76399706 76399746 41 CAGCCAGGACCCGCCAGCAGATGCTGCATGCCCAGACCTTC CAGCCAGGACCCGCCAGCAGACGCTGCATGCCCAGACCTTC < 41bp 0.754188952599756 0.546356468689067 0.14664692 0.1955106 prediction 0.415664967821379 Functional Loss - PGS1 ENSG00000087157 CDS Human protein_coding chr17:76399726 chr17:76399727 nonsynonymous SNV 0.808 0 22 hm1A_associated_SNPs_15416 0 0 1 2 76399712 76399733 mRNA hsa-miR-103 PGS1 miRanda miRanda
2192 chr17 76399727 76399727 1 + T C UCEC 76399726 + 76399706 76399746 41 CAGCCAGGACCCGCCAGCAGATGCTGCATGCCCAGACCTTC CAGCCAGGACCCGCCAGCAGACGCTGCATGCCCAGACCTTC < 41bp 0.754188952599756 0.546356468689067 0.14664692 0.1955106 prediction 0.415664967821379 Functional Loss - PGS1 ENSG00000087157 CDS Human protein_coding chr17:76399726 chr17:76399727 nonsynonymous SNV 0.808 0 22 hm1A_associated_SNPs_15416 0 0 1 2 76399712 76399733 mRNA hsa-miR-107 PGS1 miRanda miRanda
2192 chr8 95862232 95862232 1 + C T UCEC 95862234 + 95862214 95862254 41 TTGTTGAAAGATGAAGAACGAAAGCTACTTGTTGATCAGAT TTGTTGAAAGATGAAGAATGAAAGCTACTTGTTGATCAGAT < 41bp 0.707812328761278 0.422634287779422 0.23328671 0.14686406 prediction 0.415624657522557 Functional Loss - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95862234 chr8:95862232 stopgain 0.999 1 19 hm1A_associated_SNPs_15420 0 0 1 6 95862221 95862244 mRNA hsa-miR-302a INTS8 miRanda miRanda
2192 chr8 95862232 95862232 1 + C T UCEC 95862234 + 95862214 95862254 41 TTGTTGAAAGATGAAGAACGAAAGCTACTTGTTGATCAGAT TTGTTGAAAGATGAAGAATGAAAGCTACTTGTTGATCAGAT < 41bp 0.707812328761278 0.422634287779422 0.23328671 0.14686406 prediction 0.415624657522557 Functional Loss - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95862234 chr8:95862232 stopgain 0.999 1 19 hm1A_associated_SNPs_15420 0 0 1 6 95862221 95862244 mRNA hsa-miR-302b INTS8 miRanda miRanda
2192 chr8 95862232 95862232 1 + C T UCEC 95862234 + 95862214 95862254 41 TTGTTGAAAGATGAAGAACGAAAGCTACTTGTTGATCAGAT TTGTTGAAAGATGAAGAATGAAAGCTACTTGTTGATCAGAT < 41bp 0.707812328761278 0.422634287779422 0.23328671 0.14686406 prediction 0.415624657522557 Functional Loss - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95862234 chr8:95862232 stopgain 0.999 1 19 hm1A_associated_SNPs_15420 0 0 1 6 95862221 95862244 mRNA hsa-miR-302c INTS8 miRanda miRanda
2192 chr8 95862232 95862232 1 + C T UCEC 95862234 + 95862214 95862254 41 TTGTTGAAAGATGAAGAACGAAAGCTACTTGTTGATCAGAT TTGTTGAAAGATGAAGAATGAAAGCTACTTGTTGATCAGAT < 41bp 0.707812328761278 0.422634287779422 0.23328671 0.14686406 prediction 0.415624657522557 Functional Loss - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95862234 chr8:95862232 stopgain 0.999 1 19 hm1A_associated_SNPs_15420 0 0 1 6 95862221 95862244 mRNA hsa-miR-302d INTS8 miRanda miRanda
2192 chr8 95862232 95862232 1 + C T UCEC 95862234 + 95862214 95862254 41 TTGTTGAAAGATGAAGAACGAAAGCTACTTGTTGATCAGAT TTGTTGAAAGATGAAGAATGAAAGCTACTTGTTGATCAGAT < 41bp 0.707812328761278 0.422634287779422 0.23328671 0.14686406 prediction 0.415624657522557 Functional Loss - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95862234 chr8:95862232 stopgain 0.999 1 19 hm1A_associated_SNPs_15420 0 0 1 6 95862220 95862244 mRNA hsa-miR-373 INTS8 miRanda miRanda
2192 chr8 95862232 95862232 1 + C T UCEC 95862234 + 95862214 95862254 41 TTGTTGAAAGATGAAGAACGAAAGCTACTTGTTGATCAGAT TTGTTGAAAGATGAAGAATGAAAGCTACTTGTTGATCAGAT < 41bp 0.707812328761278 0.422634287779422 0.23328671 0.14686406 prediction 0.415624657522557 Functional Loss - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95862234 chr8:95862232 stopgain 0.999 1 19 hm1A_associated_SNPs_15420 0 0 1 6 95862222 95862244 mRNA hsa-miR-520e INTS8 miRanda miRanda
2192 chr19 54657565 54657565 1 + C G LUSC 54657567 + 54657547 54657587 41 GCCCAAGACCATCACTGACGAGTTTGAGCAGGTGAGGGCCC GCCCAAGACCATCACTGAGGAGTTTGAGCAGGTGAGGGCCC < 41bp 0.777056771313616 0.569399008466206 0.34600005 0.33573312 prediction 0.41531552569482 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54657567 chr19:54657565 nonsynonymous SNV 0.993 1 19 hm1A_associated_SNPs_15460 0 0 1 4 54657545 54657566 mRNA hsa-miR-223 CNOT3 miRanda miRanda
2192 chr19 54657565 54657565 1 + C G LUSC 54657567 + 54657547 54657587 41 GCCCAAGACCATCACTGACGAGTTTGAGCAGGTGAGGGCCC GCCCAAGACCATCACTGAGGAGTTTGAGCAGGTGAGGGCCC < 41bp 0.777056771313616 0.569399008466206 0.34600005 0.33573312 prediction 0.41531552569482 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54657567 chr19:54657565 nonsynonymous SNV 0.993 1 19 hm1A_associated_SNPs_15460 0 0 1 4 54657555 54657575 mRNA hsa-miR-371-5p CNOT3 miRanda miRanda
2192 chr19 54657565 54657565 1 + C G LUSC 54657567 + 54657547 54657587 41 GCCCAAGACCATCACTGACGAGTTTGAGCAGGTGAGGGCCC GCCCAAGACCATCACTGAGGAGTTTGAGCAGGTGAGGGCCC < 41bp 0.777056771313616 0.569399008466206 0.34600005 0.33573312 prediction 0.41531552569482 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54657567 chr19:54657565 nonsynonymous SNV 0.993 1 19 hm1A_associated_SNPs_15460 0 0 1 4 54657537 54657565 mRNA hsa-miR-433 CNOT3 miRanda miRanda
2192 chr19 54657565 54657565 1 + C G LUSC 54657567 + 54657547 54657587 41 GCCCAAGACCATCACTGACGAGTTTGAGCAGGTGAGGGCCC GCCCAAGACCATCACTGAGGAGTTTGAGCAGGTGAGGGCCC < 41bp 0.777056771313616 0.569399008466206 0.34600005 0.33573312 prediction 0.41531552569482 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54657567 chr19:54657565 nonsynonymous SNV 0.993 1 19 hm1A_associated_SNPs_15460 0 0 1 4 54657562 54657577 mRNA hsa-miR-874 CNOT3 miRanda miRanda
2192 chr21 34635349 34635349 1 + C T rs117810077 34635351 + 34635331 34635371 41 GTTGATAGACCCGGAGTCCGAGGAGGAGCCTGACCTGCCTG GTTGATAGACCCGGAGTCTGAGGAGGAGCCTGACCTGCCTG < 41bp 0.707408642800384 0.455198679466923 0.49380147 0.26071322 prediction 0.414817285600767 Functional Loss - IFNAR2 ENSG00000159110 CDS Human protein_coding chr21:34635351 chr21:34635349 synonymous SNV . 0 19 hm1A_associated_SNPs_15514 0 0 0 1 34635325 34635351 mRNA hsa-miR-127-3p IFNAR2 miRanda miRanda
2192 chr15 43689494 43689494 1 + C T rs186788196 43689496 + 43689476 43689516 41 TCTGTTGCACTTGACAATCGAGTATCACGGAAAGGAGCACA TCTGTTGCACTTGACAATTGAGTATCACGGAAAGGAGCACA < 41bp 0.707266302727881 0.422982615304475 0.11229518 0.086491555 prediction 0.414532605455762 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43689496 chr15:43689494 synonymous SNV . 0 19 hm1A_associated_SNPs_15547 0 0 1 1 43689476 43689495 mRNA hsa-miR-219-5p TUBGCP4 miRanda miRanda
2192 chr21 30733905 30733905 1 + C T rs147500589 30733907 + 30733887 30733927 41 ACACCACTACCTACGATCCGATCACCAGCCTGGGTTTGTAA ACACCACTACCTACGATCTGATCACCAGCCTGGGTTTGTAA < 41bp 0.769107991917444 0.56191691882917 0.76329434 0.25502717 prediction 0.414382146176548 Functional Loss - BACH1;BACH1-IT2 ENSG00000248476 ncRNA_exonic Human sense_intronic chr21:30733907 chr21:30733905 . . 0 19 hm1A_associated_SNPs_15563 0 0 0 1 30733893 30733916 mRNA hsa-miR-138 BACH1 miRanda miRanda
2192 chr1 15886050 15886050 1 + C T STAD 15886052 + 15886032 15886072 41 GAAGAAGCAAATCATTGACGACTTCATCACCCGAAACAAAT GAAGAAGCAAATCATTGATGACTTCATCACCCGAAACAAAT < 41bp 0.706949083881949 0.432726828324904 0.5178025 0.328426 prediction 0.413898167763898 Functional Loss - DNAJC16 ENSG00000116138 CDS Human protein_coding chr1:15886052 chr1:15886050 synonymous SNV . 0 19 hm1A_associated_SNPs_15616 0 0 1 1 15886028 15886050 mRNA hsa-miR-433 DNAJC16 miRanda miRanda
2192 chr19 54947035 54947035 1 + C T UCEC 54947037 + 54947017 54947057 41 CGATGACACAGACGATGACGACCCTTTCAACCCTCAGGTAC CGATGACACAGACGATGATGACCCTTTCAACCCTCAGGTAC < 41bp 0.802870027946745 0.595928790450837 0.5278503 0.39470443 prediction 0.413882474991816 Functional Loss - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54947037 chr19:54947035 synonymous SNV . 0 19 hm1A_associated_SNPs_15623 0 0 0 2 54947030 54947051 mRNA hsa-miR-296-3p TTYH1 miRanda miRanda
2192 chr19 54947035 54947035 1 + C T UCEC 54947037 + 54947017 54947057 41 CGATGACACAGACGATGACGACCCTTTCAACCCTCAGGTAC CGATGACACAGACGATGATGACCCTTTCAACCCTCAGGTAC < 41bp 0.802870027946745 0.595928790450837 0.5278503 0.39470443 prediction 0.413882474991816 Functional Loss - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54947037 chr19:54947035 synonymous SNV . 0 19 hm1A_associated_SNPs_15623 0 0 0 2 54947026 54947046 mRNA hsa-miR-488 TTYH1 miRanda miRanda
2192 chr19 50027840 50027840 1 + C G BLCA 50027842 + 50027822 50027862 41 CTGCAGCGCCTTCTCCTTCTACCCTCCGGAGCTGCAACTTC CTGCAGCGCCTTCTCCTTGTACCCTCCGGAGCTGCAACTTC < 41bp 0.706915141273323 0.463878391827484 0.45099056 0.33905548 prediction 0.413830282546645 Functional Loss - FCGRT ENSG00000104870 CDS Human protein_coding chr19:50027842 chr19:50027840 nonsynonymous SNV 0.999 4 19 hm1A_associated_SNPs_15632 0 0 1 1 50027826 50027848 mRNA hsa-let-7e FCGRT miRanda miRanda
2192 chr14 78365541 78365541 1 + C A UCEC 78365543 + 78365523 78365563 41 TTTGGAGCTGGATTTCCTCAATGAAGGGAGGAATGCTGAGA TTTGGAGCTGGATTTCCTAAATGAAGGGAGGAATGCTGAGA < 41bp 0.815844599802995 0.608999379067483 0.17106211 0.18992606 prediction 0.413690441471024 Functional Loss - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78365543 chr14:78365541 synonymous SNV . 0 19 hm1A_associated_SNPs_15647 0 0 1 1 78365531 78365550 mRNA hsa-miR-205 ADCK1 miRanda miRanda
2192 chr7 75608862 75608862 1 + C T STAD 75608864 + 75608844 75608884 41 GCCCACCGCTACGGGATGCGAGGCATGTCAGCGGACCCTGA GCCCACCGCTACGGGATGTGAGGCATGTCAGCGGACCCTGA < 41bp 0.824314755658908 0.617641142434052 0.5235026 0.3995687 prediction 0.413347226449713 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75608864 chr7:75608862 stopgain 0.998 1 19 hm1A_associated_SNPs_15686 0 0 1 1 75608842 75608863 mRNA hsa-miR-324-5p POR miRanda miRanda
2192 chr10 89473908 89473908 1 + C A SKCM 89473910 + 89473890 89473930 41 CAGAGACGTAAAAGGCCTCTATAAAAGGGCCAGAGCTGGGG CAGAGACGTAAAAGGCCTATATAAAAGGGCCAGAGCTGGGG < 41bp 0.819770427285278 0.613161048921157 0.19773847 0.15800041 prediction 0.413218756728241 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89473910 chr10:89473908 synonymous SNV . 0 19 hm1A_associated_SNPs_15694 0 0 0 1 89473901 89473922 mRNA hsa-miR-328 PAPSS2 miRanda miRanda
2192 chr9 100079355 100079355 1 + C T rs970857 100079357 + 100079337 100079377 41 GTGACCACAGGTCATGAACTATGCCCTGCTGGGCAACCGGA GTGACCACAGGTCATGAATTATGCCCTGCTGGGCAACCGGA < 41bp 0.706581321689907 0.429695764966569 0.18717694 0.17449918 prediction 0.413162643379813 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100079357 chr9:100079355 synonymous SNV . 0 19 hm1A_associated_SNPs_15700 0 0 1 2 100079347 100079366 mRNA hsa-miR-103 KIAA1529 miRanda miRanda
2192 chr9 100079355 100079355 1 + C T rs970857 100079357 + 100079337 100079377 41 GTGACCACAGGTCATGAACTATGCCCTGCTGGGCAACCGGA GTGACCACAGGTCATGAATTATGCCCTGCTGGGCAACCGGA < 41bp 0.706581321689907 0.429695764966569 0.18717694 0.17449918 prediction 0.413162643379813 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100079357 chr9:100079355 synonymous SNV . 0 19 hm1A_associated_SNPs_15700 0 0 1 2 100079347 100079366 mRNA hsa-miR-107 KIAA1529 miRanda miRanda
2192 chr3 197503839 197503839 1 + C G BLCA 197503841 + 197503821 197503861 41 GAGGGATTTTGACTGTATCTATTGACAATCCTGGAGCAGTG GAGGGATTTTGACTGTATGTATTGACAATCCTGGAGCAGTG < 41bp 0.706533868465476 0.454238350524526 0.110251516 0.109617114 prediction 0.413067736930951 Functional Loss - FYTTD1 ENSG00000122068 CDS Human protein_coding chr3:197503841 chr3:197503839 nonsynonymous SNV 0.996 4 19 hm1A_associated_SNPs_15713 0 0 1 1 197503829 197503851 mRNA hsa-miR-219-5p FYTTD1 miRanda miRanda
2192 chr17 27935979 27935979 1 + C T UCEC 27935981 + 27935961 27936001 41 GACCACATGACCTGGCAGCGAGGGAACCGCAGCTTTGTCTT GACCACATGACCTGGCAGTGAGGGAACCGCAGCTTTGTCTT < 41bp 0.831005233104265 0.624515537361184 0.38100833 0.3427263 prediction 0.412979391486162 Functional Loss - ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27935981 chr17:27935979 stopgain 0.999 1 19 hm1A_associated_SNPs_15724 0 0 0 1 27935968 27935997 mRNA hsa-miR-93 ANKRD13B miRanda miRanda
2192 chr20 58562571 58562571 1 + C G rs11086690 58562573 + 58562553 58562593 41 CGTCTCCTGGTTCAAGATCGAGATTCTCCATTTACATCAGC CGTCTCCTGGTTCAAGATGGAGATTCTCCATTTACATCAGC < 41bp 0.733551769360569 0.527164126385187 0.34580582 0.21028313 prediction 0.412775285950765 Functional Loss - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58562573 chr20:58562571 nonsynonymous SNV 0.005 0 19 hm1A_associated_SNPs_15753 0 0 0 1 58562557 58562578 mRNA hsa-miR-216a CDH26 miRanda miRanda
2192 chr6 44116545 44116545 1 + C T UCEC 44116547 + 44116527 44116567 41 AGGGAGCACCTCTCCATCCGAGGCTTCATCTGGTGGCTGCG AGGGAGCACCTCTCCATCTGAGGCTTCATCTGGTGGCTGCG < 41bp 0.845280501323618 0.639079839703217 0.58467424 0.421479 prediction 0.412401323240801 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116547 chr6:44116545 stopgain 1.000 1 19 hm1A_associated_SNPs_15795 0 0 1 3 44116541 44116565 mRNA hsa-miR-29a TMEM63B miRanda miRanda
2192 chr6 44116545 44116545 1 + C T UCEC 44116547 + 44116527 44116567 41 AGGGAGCACCTCTCCATCCGAGGCTTCATCTGGTGGCTGCG AGGGAGCACCTCTCCATCTGAGGCTTCATCTGGTGGCTGCG < 41bp 0.845280501323618 0.639079839703217 0.58467424 0.421479 prediction 0.412401323240801 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116547 chr6:44116545 stopgain 1.000 1 19 hm1A_associated_SNPs_15795 0 0 1 3 44116542 44116565 mRNA hsa-miR-29b TMEM63B miRanda miRanda
2192 chr6 44116545 44116545 1 + C T UCEC 44116547 + 44116527 44116567 41 AGGGAGCACCTCTCCATCCGAGGCTTCATCTGGTGGCTGCG AGGGAGCACCTCTCCATCTGAGGCTTCATCTGGTGGCTGCG < 41bp 0.845280501323618 0.639079839703217 0.58467424 0.421479 prediction 0.412401323240801 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116547 chr6:44116545 stopgain 1.000 1 19 hm1A_associated_SNPs_15795 0 0 1 3 44116541 44116565 mRNA hsa-miR-29c TMEM63B miRanda miRanda
2192 chr11 67200454 67200454 1 + C T STAD 67200456 + 67200436 67200476 41 GACCGACTTTGGACTCTGCAAGGAGTCTATCCATGAGGGCG GACCGACTTTGGACTCTGTAAGGAGTCTATCCATGAGGGCG < 41bp 0.836789817455144 0.630592555246673 0.24902853 0.24069482 prediction 0.412394524416942 Functional Loss - RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67200456 chr11:67200454 stopgain . 0 19 hm1A_associated_SNPs_15798 0 0 1 1 67200450 67200472 mRNA hsa-miR-433 RPS6KB2 miRanda miRanda
2192 chr1 87109563 87109563 1 + C T UCEC 87109565 + 87109545 87109585 41 CAGGAAGACCGTCTCTTTCGAATGAATCAAGCAGCAGAATT CAGGAAGACCGTCTCTTTTGAATGAATCAAGCAGCAGAATT < 41bp 0.706162682332826 0.488178997809327 0.044045627 0.046420336 prediction 0.412325364665653 Functional Loss - CLCA3P ENSG00000153923 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:87109565 chr1:87109563 . . 0 19 hm1A_associated_SNPs_15807 0 0 0 1 87109560 87109581 mRNA hsa-miR-218 CLCA3P miRanda miRanda
2192 chr10 95552569 95552569 1 + C A HNSC 95552571 + 95552551 95552591 41 GGAATGGCTTGGCCACACCAATGCAACTGTTGAAGACATCT GGAATGGCTTGGCCACACAAATGCAACTGTTGAAGACATCT < 41bp 0.850142008208755 0.644016275356603 0.25550058 0.12958238 prediction 0.412251465704304 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95552571 chr10:95552569 synonymous SNV . 0 19 hm1A_associated_SNPs_15816 0 0 0 3 95552556 95552576 mRNA hsa-miR-33a LGI1 miRanda miRanda
2192 chr10 95552569 95552569 1 + C A HNSC 95552571 + 95552551 95552591 41 GGAATGGCTTGGCCACACCAATGCAACTGTTGAAGACATCT GGAATGGCTTGGCCACACAAATGCAACTGTTGAAGACATCT < 41bp 0.850142008208755 0.644016275356603 0.25550058 0.12958238 prediction 0.412251465704304 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95552571 chr10:95552569 synonymous SNV . 0 19 hm1A_associated_SNPs_15816 0 0 0 3 95552557 95552576 mRNA hsa-miR-33b LGI1 miRanda miRanda
2192 chr10 95552569 95552569 1 + C A HNSC 95552571 + 95552551 95552591 41 GGAATGGCTTGGCCACACCAATGCAACTGTTGAAGACATCT GGAATGGCTTGGCCACACAAATGCAACTGTTGAAGACATCT < 41bp 0.850142008208755 0.644016275356603 0.25550058 0.12958238 prediction 0.412251465704304 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95552571 chr10:95552569 synonymous SNV . 0 19 hm1A_associated_SNPs_15816 0 0 0 3 95552560 95552584 mRNA hsa-miR-421 LGI1 miRanda miRanda
2192 chr9 93650108 93650108 1 + C T SARC 93650110 + 93650090 93650130 41 CAAGTTCTCCAGCAAAAGCGATGTCTGGAGCTTTGGAGTGT CAAGTTCTCCAGCAAAAGTGATGTCTGGAGCTTTGGAGTGT < 41bp 0.871734205614699 0.665842060279815 0.61775345 0.24845967 prediction 0.411784290669768 Functional Loss - SYK ENSG00000165025 CDS Human protein_coding chr9:93650110 chr9:93650108 synonymous SNV . 0 19 hm1A_associated_SNPs_15880 0 0 0 1 93650099 93650118 mRNA hsa-miR-338-3p SYK miRanda miRanda
2192 chr1 215259819 215259819 1 + C T BLCA 215259821 + 215259801 215259841 41 CCCGGGTGGAGAGTGACACGACCATTAATGTTATGAAATGG CCCGGGTGGAGAGTGACATGACCATTAATGTTATGAAATGG < 41bp 0.705843754235885 0.446289254943 0.2826503 0.27904192 prediction 0.411687508471769 Functional Loss - KCNK2 ENSG00000082482 CDS Human protein_coding chr1:215259821 chr1:215259819 nonsynonymous SNV 0.988 1 19 hm1A_associated_SNPs_15889 0 0 0 1 215259812 215259833 mRNA hsa-miR-543 KCNK2 miRanda miRanda
2192 chr6 39046944 39046944 1 + C A LUAD 39046946 + 39046926 39046966 41 GGTATCCAAACTGAAGGCCAATCTCATGTGCAAGACAGACA GGTATCCAAACTGAAGGCAAATCTCATGTGCAAGACAGACA < 41bp 0.842925339220522 0.637112057122924 0.08317 0.09305766 prediction 0.411626564195195 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39046946 chr6:39046944 synonymous SNV . 0 19 hm1A_associated_SNPs_15899 0 0 0 1 39046942 39046962 mRNA hsa-miR-431 GLP1R miRanda miRanda
2192 chr13 28006937 28006937 1 + C T UCEC 28006939 + 28006919 28006959 41 ACGACATGCCAAGGCCCACGAGGGTGTGTACGGATAGCCTG ACGACATGCCAAGGCCCATGAGGGTGTGTACGGATAGCCTG < 41bp 0.739449712386278 0.533681090849757 0.27084866 0.25476378 prediction 0.411537243073043 Functional Loss - GTF3A ENSG00000122034 CDS Human protein_coding chr13:28006939 chr13:28006937 synonymous SNV . 0 19 hm1A_associated_SNPs_15908 0 0 1 1 28006920 28006941 mRNA hsa-miR-330-5p GTF3A miRanda miRanda
2192 chr2 183993024 183993024 1 + C T LUAD 183993026 + 183993006 183993046 41 TTCATGTAGGATCTGAACCAATGATGCTGGGTTCACCCACA TTCATGTAGGATCTGAACTAATGATGCTGGGTTCACCCACA < 41bp 0.83574821326882 0.630060601331119 0.09916878 0.12550652 prediction 0.411375223875402 Functional Loss - NUP35 ENSG00000163002 CDS Human protein_coding chr2:183993026 chr2:183993024 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_15928 0 0 1 1 183993015 183993036 mRNA hsa-miR-338-3p NUP35 miRanda miRanda
2192 chr4 74279174 74279174 1 + C T COAD 74279176 + 74279156 74279196 41 TCTGTGAAAATCAAGATTCGATCTCCAGTAAACTGAAGGAA TCTGTGAAAATCAAGATTTGATCTCCAGTAAACTGAAGGAA < 41bp 0.878774450613376 0.673098061448062 0.16660345 0.039583564 prediction 0.411352778330629 Functional Loss - ALB ENSG00000163631 CDS Human protein_coding chr4:74279176 chr4:74279174 nonsynonymous SNV 0.029 0 19 hm1A_associated_SNPs_15929 0 0 1 1 74279173 74279195 mRNA hsa-miR-205 ALB miRanda miRanda
2192 chr1 160143945 160143945 1 + T C rs199962758 160143944 + 160143924 160143964 41 ATGGTGCAGAACTGAAGGACATACAGTCCAAGCAGCTTGAT ATGGTGCAGAACTGAAGGACACACAGTCCAAGCAGCTTGAT < 41bp 0.705564596247417 0.47702992461627 0.15435237 0.15847808 prediction 0.411129192494833 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160143944 chr1:160143945 nonsynonymous SNV 0.001 3 22 hm1A_associated_SNPs_15960 0 0 0 2 160143938 160143962 mRNA hsa-miR-302d ATP1A4 miRanda miRanda
2192 chr1 160143945 160143945 1 + T C rs199962758 160143944 + 160143924 160143964 41 ATGGTGCAGAACTGAAGGACATACAGTCCAAGCAGCTTGAT ATGGTGCAGAACTGAAGGACACACAGTCCAAGCAGCTTGAT < 41bp 0.705564596247417 0.47702992461627 0.15435237 0.15847808 prediction 0.411129192494833 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160143944 chr1:160143945 nonsynonymous SNV 0.001 3 22 hm1A_associated_SNPs_15960 0 0 0 2 160143939 160143962 mRNA hsa-miR-373 ATP1A4 miRanda miRanda
2192 chr19 36205667 36205667 1 + C T LUAD 36205669 + 36205649 36205689 41 CCCGCCCACAGCCTGGTGCTAGCAGGTGTCAGCCAGCAGCT CCCGCCCACAGCCTGGTGTTAGCAGGTGTCAGCCAGCAGCT < 41bp 0.824349655634187 0.618947941528518 0.1958212 0.14337286 prediction 0.410803428211339 Functional Loss - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205669 chr19:36205667 synonymous SNV . 0 19 hm1A_associated_SNPs_16001 0 0 0 3 36205647 36205669 mRNA hsa-miR-29a ZBTB32 miRanda miRanda
2192 chr19 36205667 36205667 1 + C T LUAD 36205669 + 36205649 36205689 41 CCCGCCCACAGCCTGGTGCTAGCAGGTGTCAGCCAGCAGCT CCCGCCCACAGCCTGGTGTTAGCAGGTGTCAGCCAGCAGCT < 41bp 0.824349655634187 0.618947941528518 0.1958212 0.14337286 prediction 0.410803428211339 Functional Loss - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205669 chr19:36205667 synonymous SNV . 0 19 hm1A_associated_SNPs_16001 0 0 0 3 36205647 36205669 mRNA hsa-miR-29b ZBTB32 miRanda miRanda
2192 chr19 36205667 36205667 1 + C T LUAD 36205669 + 36205649 36205689 41 CCCGCCCACAGCCTGGTGCTAGCAGGTGTCAGCCAGCAGCT CCCGCCCACAGCCTGGTGTTAGCAGGTGTCAGCCAGCAGCT < 41bp 0.824349655634187 0.618947941528518 0.1958212 0.14337286 prediction 0.410803428211339 Functional Loss - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205669 chr19:36205667 synonymous SNV . 0 19 hm1A_associated_SNPs_16001 0 0 0 3 36205647 36205669 mRNA hsa-miR-29c ZBTB32 miRanda miRanda
2192 chr8 95866080 95866080 1 + C G COAD 95866082 + 95866062 95866102 41 TATCCTGGGAATTAAAGACAATTTAACAAGAGATTTGGTTT TATCCTGGGAATTAAAGAGAATTTAACAAGAGATTTGGTTT < 41bp 0.764280328935272 0.558899806893809 0.042040408 0.055455685 prediction 0.410761044082926 Functional Loss - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95866082 chr8:95866080 nonsynonymous SNV 0.994 3 19 hm1A_associated_SNPs_16007 0 0 0 1 95866077 95866097 mRNA hsa-miR-216b INTS8 miRanda miRanda
2192 chr17 38152506 38152506 1 + T C rs111511592 38152505 + 38152485 38152525 41 ATGTCCAATCCAAGGAGATGATTGACATCTATTCCACCCGA ATGTCCAATCCAAGGAGATGACTGACATCTATTCCACCCGA < 41bp 0.786896549944213 0.581610539700751 0.18607536 0.25058064 prediction 0.410572020486925 Functional Loss - PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38152505 chr17:38152506 nonsynonymous SNV 1.000 0 22 hm1A_associated_SNPs_16034 0 0 1 1 38152488 38152511 mRNA hsa-miR-505 PSMD3 miRanda miRanda
2192 chr4 158496077 158496077 1 + T C rs73857649 158496076 + 158496056 158496096 41 CCATGGCTGCCCATGGACCAATTGGCATGTGCTTCCTTCCC CCATGGCTGCCCATGGACCAACTGGCATGTGCTTCCTTCCC < 41bp 0.705228470156658 0.471925086644496 0.47809067 0.37504575 prediction 0.410456940313315 Functional Loss - LINC02433 ENSG00000234111 ncRNA_exonic Human lincRNA chr4:158496076 chr4:158496077 . . 0 22 hm1A_associated_SNPs_16052 0 0 0 3 158496069 158496092 mRNA hsa-miR-7 LOC340017 miRanda miRanda
2192 chr4 158496077 158496077 1 + T C rs73857649 158496076 + 158496056 158496096 41 CCATGGCTGCCCATGGACCAATTGGCATGTGCTTCCTTCCC CCATGGCTGCCCATGGACCAACTGGCATGTGCTTCCTTCCC < 41bp 0.705228470156658 0.471925086644496 0.47809067 0.37504575 prediction 0.410456940313315 Functional Loss - LINC02433 ENSG00000234111 ncRNA_exonic Human lincRNA chr4:158496076 chr4:158496077 . . 0 22 hm1A_associated_SNPs_16052 0 0 0 3 158496055 158496077 mRNA hsa-miR-133a LOC340017 miRanda miRanda
2192 chr4 158496077 158496077 1 + T C rs73857649 158496076 + 158496056 158496096 41 CCATGGCTGCCCATGGACCAATTGGCATGTGCTTCCTTCCC CCATGGCTGCCCATGGACCAACTGGCATGTGCTTCCTTCCC < 41bp 0.705228470156658 0.471925086644496 0.47809067 0.37504575 prediction 0.410456940313315 Functional Loss - LINC02433 ENSG00000234111 ncRNA_exonic Human lincRNA chr4:158496076 chr4:158496077 . . 0 22 hm1A_associated_SNPs_16052 0 0 0 3 158496055 158496077 mRNA hsa-miR-133b LOC340017 miRanda miRanda
2192 chr21 47986480 47986480 1 + C T COAD 47986482 + 47986462 47986502 41 ACTGTTCACAGGGCGGCACGATGCACTGTATGTGGTTGGGT ACTGTTCACAGGGCGGCATGATGCACTGTATGTGGTTGGGT < 41bp 0.705163247458323 0.415362662805436 0.30343252 0.19111362 prediction 0.410326494916646 Functional Loss - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47986482 chr21:47986480 synonymous SNV . 0 19 hm1A_associated_SNPs_16072 0 0 1 3 47986473 47986490 mRNA hsa-miR-148a DIP2A miRanda miRanda
2192 chr21 47986480 47986480 1 + C T COAD 47986482 + 47986462 47986502 41 ACTGTTCACAGGGCGGCACGATGCACTGTATGTGGTTGGGT ACTGTTCACAGGGCGGCATGATGCACTGTATGTGGTTGGGT < 41bp 0.705163247458323 0.415362662805436 0.30343252 0.19111362 prediction 0.410326494916646 Functional Loss - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47986482 chr21:47986480 synonymous SNV . 0 19 hm1A_associated_SNPs_16072 0 0 1 3 47986473 47986490 mRNA hsa-miR-152 DIP2A miRanda miRanda
2192 chr21 47986480 47986480 1 + C T COAD 47986482 + 47986462 47986502 41 ACTGTTCACAGGGCGGCACGATGCACTGTATGTGGTTGGGT ACTGTTCACAGGGCGGCATGATGCACTGTATGTGGTTGGGT < 41bp 0.705163247458323 0.415362662805436 0.30343252 0.19111362 prediction 0.410326494916646 Functional Loss - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47986482 chr21:47986480 synonymous SNV . 0 19 hm1A_associated_SNPs_16072 0 0 1 3 47986473 47986490 mRNA hsa-miR-148b DIP2A miRanda miRanda
2192 chr1 185069018 185069018 1 + C G ACC 185069020 + 185069000 185069040 41 TTCGAAGCAAAGGTGAATCAAACCAGATGAACCTTGATACA TTCGAAGCAAAGGTGAATGAAACCAGATGAACCTTGATACA < 41bp 0.719816939833388 0.514802782405279 0.19029176 0.20286116 prediction 0.410028314856218 Functional Loss - RNF2 ENSG00000121481 CDS Human protein_coding chr1:185069020 chr1:185069018 stopgain 1.000 1 19 hm1A_associated_SNPs_16119 0 0 1 1 185069012 185069034 mRNA hsa-miR-154 RNF2 miRanda miRanda
2192 chr6 112382472 112382472 1 + C A rs145747429 112382474 + 112382454 112382494 41 AGTAGACAGGCCTAGGTACGAGACTGGAGTGTGTGCATGTA AGTAGACAGGCCTAGGTAAGAGACTGGAGTGTGTGCATGTA < 41bp 0.782099261220401 0.577223116525725 0.11422163 0.07369277 prediction 0.409752289389352 Functional Loss - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112382474 chr6:112382472 stopgain 0.258 1 19 hm1A_associated_SNPs_16156 0 0 0 1 112382468 112382491 mRNA hsa-miR-425 WISP3 miRanda miRanda
2192 chr6 26423226 26423226 1 + C T UCEC 26423228 + 26423208 26423248 41 GGAGAAAACACTACGTTACGATGCTGTCTGTCACCCGAGGA GGAGAAAACACTACGTTATGATGCTGTCTGTCACCCGAGGA < 41bp 0.814647467916327 0.60984344444322 0.78263927 0.33046532 prediction 0.409608046946213 Functional Loss - BTN2A3P ENSG00000124549 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:26423228 chr6:26423226 . . 0 19 hm1A_associated_SNPs_16182 0 0 0 1 26423220 26423242 mRNA hsa-miR-542-3p BTN2A3 miRanda miRanda
2192 chr1 93306144 93306144 1 + C T UCEC 93306146 + 93306126 93306166 41 AAAGCTCATGCTGCTATACGAGAGAATCCAGTCTATGAAAA AAAGCTCATGCTGCTATATGAGAGAATCCAGTCTATGAAAA < 41bp 0.704627395240791 0.413056498986444 0.18238631 0.15167513 prediction 0.409254790481582 Functional Loss - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93306146 chr1:93306144 stopgain 0.998 1 19 hm1A_associated_SNPs_16216 0 0 1 4 93306144 93306164 mRNA hsa-miR-376c RPL5 miRanda miRanda
2192 chr1 93306144 93306144 1 + C T UCEC 93306146 + 93306126 93306166 41 AAAGCTCATGCTGCTATACGAGAGAATCCAGTCTATGAAAA AAAGCTCATGCTGCTATATGAGAGAATCCAGTCTATGAAAA < 41bp 0.704627395240791 0.413056498986444 0.18238631 0.15167513 prediction 0.409254790481582 Functional Loss - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93306146 chr1:93306144 stopgain 0.998 1 19 hm1A_associated_SNPs_16216 0 0 1 4 93306142 93306164 mRNA hsa-miR-376a RPL5 miRanda miRanda
2192 chr1 93306144 93306144 1 + C T UCEC 93306146 + 93306126 93306166 41 AAAGCTCATGCTGCTATACGAGAGAATCCAGTCTATGAAAA AAAGCTCATGCTGCTATATGAGAGAATCCAGTCTATGAAAA < 41bp 0.704627395240791 0.413056498986444 0.18238631 0.15167513 prediction 0.409254790481582 Functional Loss - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93306146 chr1:93306144 stopgain 0.998 1 19 hm1A_associated_SNPs_16216 0 0 1 4 93306141 93306164 mRNA hsa-miR-376b RPL5 miRanda miRanda
2192 chr1 93306144 93306144 1 + C T UCEC 93306146 + 93306126 93306166 41 AAAGCTCATGCTGCTATACGAGAGAATCCAGTCTATGAAAA AAAGCTCATGCTGCTATATGAGAGAATCCAGTCTATGAAAA < 41bp 0.704627395240791 0.413056498986444 0.18238631 0.15167513 prediction 0.409254790481582 Functional Loss - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93306146 chr1:93306144 stopgain 0.998 1 19 hm1A_associated_SNPs_16216 0 0 1 4 93306134 93306155 mRNA hsa-miR-876-5p RPL5 miRanda miRanda
2192 chr22 51237496 51237496 1 + C T CESC 51237498 + 51237478 51237518 41 GAGAACAAGGCATATGTTCGACTTGCTCCTGATTATGATGC GAGAACAAGGCATATGTTTGACTTGCTCCTGATTATGATGC < 41bp 0.834741322460901 0.630120862859831 0.28800392 0.12723312 prediction 0.40924091920214 Functional Loss - RPL23AP82 ENSG00000184319 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:51237498 chr22:51237496 . . 0 19 hm1A_associated_SNPs_16219 0 0 0 1 51237476 51237500 mRNA hsa-miR-505 RPL23AP82 miRanda miRanda
2192 chrY 7678414 7678414 1 + T C rs754240175 7678413 + 7678393 7678433 41 GTGAGAATGGGCAGGCAGGAATGTAATGTCACTTGCATTCT GTGAGAATGGGCAGGCAGGAACGTAATGTCACTTGCATTCT < 41bp 0.716012767842473 0.511510611715235 0.11471003 0.15670869 prediction 0.409004312254477 Functional Loss - TTTY12 ENSG00000237048 ncRNA_exonic Human lincRNA chrY:7678413 chrY:7678414 . . 0 22 hm1A_associated_SNPs_16252 0 0 0 5 7678395 7678417 mRNA hsa-miR-181a TTTY12 miRanda miRanda
2192 chrY 7678414 7678414 1 + T C rs754240175 7678413 + 7678393 7678433 41 GTGAGAATGGGCAGGCAGGAATGTAATGTCACTTGCATTCT GTGAGAATGGGCAGGCAGGAACGTAATGTCACTTGCATTCT < 41bp 0.716012767842473 0.511510611715235 0.11471003 0.15670869 prediction 0.409004312254477 Functional Loss - TTTY12 ENSG00000237048 ncRNA_exonic Human lincRNA chrY:7678413 chrY:7678414 . . 0 22 hm1A_associated_SNPs_16252 0 0 0 5 7678399 7678422 mRNA hsa-miR-181b TTTY12 miRanda miRanda
2192 chrY 7678414 7678414 1 + T C rs754240175 7678413 + 7678393 7678433 41 GTGAGAATGGGCAGGCAGGAATGTAATGTCACTTGCATTCT GTGAGAATGGGCAGGCAGGAACGTAATGTCACTTGCATTCT < 41bp 0.716012767842473 0.511510611715235 0.11471003 0.15670869 prediction 0.409004312254477 Functional Loss - TTTY12 ENSG00000237048 ncRNA_exonic Human lincRNA chrY:7678413 chrY:7678414 . . 0 22 hm1A_associated_SNPs_16252 0 0 0 5 7678395 7678417 mRNA hsa-miR-181c TTTY12 miRanda miRanda
2192 chrY 7678414 7678414 1 + T C rs754240175 7678413 + 7678393 7678433 41 GTGAGAATGGGCAGGCAGGAATGTAATGTCACTTGCATTCT GTGAGAATGGGCAGGCAGGAACGTAATGTCACTTGCATTCT < 41bp 0.716012767842473 0.511510611715235 0.11471003 0.15670869 prediction 0.409004312254477 Functional Loss - TTTY12 ENSG00000237048 ncRNA_exonic Human lincRNA chrY:7678413 chrY:7678414 . . 0 22 hm1A_associated_SNPs_16252 0 0 0 5 7678399 7678422 mRNA hsa-miR-181d TTTY12 miRanda miRanda
2192 chrY 7678414 7678414 1 + T C rs754240175 7678413 + 7678393 7678433 41 GTGAGAATGGGCAGGCAGGAATGTAATGTCACTTGCATTCT GTGAGAATGGGCAGGCAGGAACGTAATGTCACTTGCATTCT < 41bp 0.716012767842473 0.511510611715235 0.11471003 0.15670869 prediction 0.409004312254477 Functional Loss - TTTY12 ENSG00000237048 ncRNA_exonic Human lincRNA chrY:7678413 chrY:7678414 . . 0 22 hm1A_associated_SNPs_16252 0 0 0 5 7678404 7678425 mRNA hsa-miR-542-3p TTTY12 miRanda miRanda
2192 chr10 75552442 75552442 1 + C G SKCM 75552444 + 75552424 75552464 41 CAATGGGCTTCCCAAAACCAAAGAGGCAGCCCCTGCAGTTG CAATGGGCTTCCCAAAACGAAAGAGGCAGCCCCTGCAGTTG < 41bp 0.718029974053387 0.513530736884187 0.30366722 0.3843752 prediction 0.4089984743384 Functional Loss - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75552444 chr10:75552442 synonymous SNV . 0 19 hm1A_associated_SNPs_16255 0 0 0 1 75552425 75552447 mRNA hsa-miR-9 KIAA0913 miRanda miRanda
2192 chr13 37583365 37583365 1 + C T COAD 37583367 + 37583347 37583387 41 CTTCAGGACTGTATGAGCCGAGCAGTTACAAGACACAAAGA CTTCAGGACTGTATGAGCTGAGCAGTTACAAGACACAAAGA < 41bp 0.704489305257283 0.398555871927667 0.2851037 0.24910003 prediction 0.408978610514567 Functional Loss - EXOSC8 ENSG00000120699 CDS Human protein_coding chr13:37583367 chr13:37583365 stopgain 0.995 1 19 hm1A_associated_SNPs_16260 0 0 1 3 37583362 37583384 mRNA hsa-miR-187 EXOSC8 miRanda miRanda
2192 chr13 37583365 37583365 1 + C T COAD 37583367 + 37583347 37583387 41 CTTCAGGACTGTATGAGCCGAGCAGTTACAAGACACAAAGA CTTCAGGACTGTATGAGCTGAGCAGTTACAAGACACAAAGA < 41bp 0.704489305257283 0.398555871927667 0.2851037 0.24910003 prediction 0.408978610514567 Functional Loss - EXOSC8 ENSG00000120699 CDS Human protein_coding chr13:37583367 chr13:37583365 stopgain 0.995 1 19 hm1A_associated_SNPs_16260 0 0 1 3 37583364 37583387 mRNA hsa-miR-9 EXOSC8 miRanda miRanda
2192 chr13 37583365 37583365 1 + C T COAD 37583367 + 37583347 37583387 41 CTTCAGGACTGTATGAGCCGAGCAGTTACAAGACACAAAGA CTTCAGGACTGTATGAGCTGAGCAGTTACAAGACACAAAGA < 41bp 0.704489305257283 0.398555871927667 0.2851037 0.24910003 prediction 0.408978610514567 Functional Loss - EXOSC8 ENSG00000120699 CDS Human protein_coding chr13:37583367 chr13:37583365 stopgain 0.995 1 19 hm1A_associated_SNPs_16260 0 0 1 3 37583361 37583381 mRNA hsa-miR-431 EXOSC8 miRanda miRanda
2192 chrX 56756014 56756014 1 + C T UCEC 56756016 + 56755996 56756036 41 AAATAAATTTCTCCCACCCTAAACCAGGTCAGATTCTTTCT AAATAAATTTCTCCCACCTTAAACCAGGTCAGATTCTTTCT < 41bp 0.780750762406361 0.576342214217101 0.20530656 0.16912884 prediction 0.40881709637852 Functional Loss - NBDY ENSG00000204272 ncRNA_exonic Human protein_coding chrX:56756016 chrX:56756014 . . 0 19 hm1A_associated_SNPs_16280 0 0 1 3 56756005 56756022 mRNA hsa-miR-320a LOC550643 miRanda miRanda
2192 chrX 56756014 56756014 1 + C T UCEC 56756016 + 56755996 56756036 41 AAATAAATTTCTCCCACCCTAAACCAGGTCAGATTCTTTCT AAATAAATTTCTCCCACCTTAAACCAGGTCAGATTCTTTCT < 41bp 0.780750762406361 0.576342214217101 0.20530656 0.16912884 prediction 0.40881709637852 Functional Loss - NBDY ENSG00000204272 ncRNA_exonic Human protein_coding chrX:56756016 chrX:56756014 . . 0 19 hm1A_associated_SNPs_16280 0 0 1 3 56756005 56756022 mRNA hsa-miR-320b LOC550643 miRanda miRanda
2192 chrX 56756014 56756014 1 + C T UCEC 56756016 + 56755996 56756036 41 AAATAAATTTCTCCCACCCTAAACCAGGTCAGATTCTTTCT AAATAAATTTCTCCCACCTTAAACCAGGTCAGATTCTTTCT < 41bp 0.780750762406361 0.576342214217101 0.20530656 0.16912884 prediction 0.40881709637852 Functional Loss - NBDY ENSG00000204272 ncRNA_exonic Human protein_coding chrX:56756016 chrX:56756014 . . 0 19 hm1A_associated_SNPs_16280 0 0 1 3 56756007 56756022 mRNA hsa-miR-320c LOC550643 miRanda miRanda
2192 chr4 158284072 158284072 1 + C T UCEC 158284074 + 158284054 158284094 41 ACAAGTCAAGGGCCGAGGCGAAACGAATGAAGGTGGCAAAG ACAAGTCAAGGGCCGAGGTGAAACGAATGAAGGTGGCAAAG < 41bp 0.827800721865954 0.623658816079212 0.52667946 0.3760451 prediction 0.408283811573485 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158284074 chr4:158284072 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_16358 0 0 0 1 158284066 158284087 mRNA hsa-miR-205 GRIA2 miRanda miRanda
2192 chr11 134131015 134131015 1 + C T UCEC 134131017 + 134130997 134131037 41 GGCCAACAGAATTGGGAGCGAGGGGCAGGGCTTCCTCATTG GGCCAACAGAATTGGGAGTGAGGGGCAGGGCTTCCTCATTG < 41bp 0.842178295133659 0.638058406353174 0.39206865 0.26325983 prediction 0.408239777560971 Functional Loss - ACAD8 ENSG00000151498 CDS Human protein_coding chr11:134131017 chr11:134131015 synonymous SNV . 0 19 hm1A_associated_SNPs_16368 0 0 1 1 134130993 134131015 mRNA hsa-miR-150 ACAD8 miRanda miRanda
2192 chr3 52283764 52283764 1 + C T SKCM 52283766 + 52283746 52283786 41 AGAGGAAGGGCAGGTGTCCTACGATGACGTCTCTGTGTTCG AGAGGAAGGGCAGGTGTCTTACGATGACGTCTCTGTGTTCG < 41bp 0.703918047648767 0.403903316680684 0.1680679 0.13239574 prediction 0.407836095297534 Functional Loss - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52283766 chr3:52283764 synonymous SNV . 0 19 hm1A_associated_SNPs_16426 0 0 1 1 52283743 52283764 mRNA hsa-miR-504 PPM1M miRanda miRanda
2192 chr19 36206026 36206026 1 + C T COAD 36206028 + 36206008 36206048 41 AGAACAGGAGATGTTGCACAAGCACTCGCCACCAAGAGGCA AGAACAGGAGATGTTGCATAAGCACTCGCCACCAAGAGGCA < 41bp 0.703816787755809 0.478547835480924 0.28427392 0.27589762 prediction 0.407633575511617 Functional Loss - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36206028 chr19:36206026 synonymous SNV . 0 19 hm1A_associated_SNPs_16445 0 0 0 1 36206005 36206027 mRNA hsa-miR-505 ZBTB32 miRanda miRanda
2192 chr10 82112258 82112258 1 + C A CESC 82112260 + 82112240 82112280 41 ACTTGTAAATCCACAATGCTAAATATTCTATCGGATCCACT ACTTGTAAATCCACAATGATAAATATTCTATCGGATCCACT < 41bp 0.703804846088606 0.491895062627007 0.06929025 0.068324566 prediction 0.407609692177212 Functional Loss - DYDC1 ENSG00000170788 CDS Human protein_coding chr10:82112260 chr10:82112258 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_16451 0 0 0 2 82112238 82112260 mRNA hsa-miR-33a DYDC2 miRanda miRanda
2192 chr10 82112258 82112258 1 + C A CESC 82112260 + 82112240 82112280 41 ACTTGTAAATCCACAATGCTAAATATTCTATCGGATCCACT ACTTGTAAATCCACAATGATAAATATTCTATCGGATCCACT < 41bp 0.703804846088606 0.491895062627007 0.06929025 0.068324566 prediction 0.407609692177212 Functional Loss - DYDC1 ENSG00000170788 CDS Human protein_coding chr10:82112260 chr10:82112258 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_16451 0 0 0 2 82112239 82112260 mRNA hsa-miR-33b DYDC2 miRanda miRanda
2192 chr6 154412275 154412275 1 + C T COAD 154412277 + 154412257 154412297 41 GAAAAGGACAGGAATCTTCGAAGGATCACCAGGATGGTGCT GAAAAGGACAGGAATCTTTGAAGGATCACCAGGATGGTGCT < 41bp 0.750347588519143 0.546746966623006 0.48817843 0.4000019 prediction 0.407201243792274 Functional Loss - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154412277 chr6:154412275 stopgain 0.889 1 19 hm1A_associated_SNPs_16501 0 0 0 3 154412275 154412298 mRNA hsa-miR-29a OPRM1 miRanda miRanda
2192 chr6 154412275 154412275 1 + C T COAD 154412277 + 154412257 154412297 41 GAAAAGGACAGGAATCTTCGAAGGATCACCAGGATGGTGCT GAAAAGGACAGGAATCTTTGAAGGATCACCAGGATGGTGCT < 41bp 0.750347588519143 0.546746966623006 0.48817843 0.4000019 prediction 0.407201243792274 Functional Loss - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154412277 chr6:154412275 stopgain 0.889 1 19 hm1A_associated_SNPs_16501 0 0 0 3 154412274 154412298 mRNA hsa-miR-29b OPRM1 miRanda miRanda
2192 chr6 154412275 154412275 1 + C T COAD 154412277 + 154412257 154412297 41 GAAAAGGACAGGAATCTTCGAAGGATCACCAGGATGGTGCT GAAAAGGACAGGAATCTTTGAAGGATCACCAGGATGGTGCT < 41bp 0.750347588519143 0.546746966623006 0.48817843 0.4000019 prediction 0.407201243792274 Functional Loss - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154412277 chr6:154412275 stopgain 0.889 1 19 hm1A_associated_SNPs_16501 0 0 0 3 154412275 154412298 mRNA hsa-miR-29c OPRM1 miRanda miRanda
2192 chr3 158363529 158363529 1 + C T UCEC 158363531 + 158363511 158363551 41 AAAACTACATTAACAGAACGAGTCCTTTACTACACTGGCAG AAAACTACATTAACAGAATGAGTCCTTTACTACACTGGCAG < 41bp 0.703571154907662 0.442645435499259 0.08522946 0.04825273 prediction 0.407142309815324 Functional Loss - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158363531 chr3:158363529 stopgain 0.997 1 19 hm1A_associated_SNPs_16511 0 0 1 2 158363526 158363549 mRNA hsa-miR-199a-5p GFM1 miRanda miRanda
2192 chr3 158363529 158363529 1 + C T UCEC 158363531 + 158363511 158363551 41 AAAACTACATTAACAGAACGAGTCCTTTACTACACTGGCAG AAAACTACATTAACAGAATGAGTCCTTTACTACACTGGCAG < 41bp 0.703571154907662 0.442645435499259 0.08522946 0.04825273 prediction 0.407142309815324 Functional Loss - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158363531 chr3:158363529 stopgain 0.997 1 19 hm1A_associated_SNPs_16511 0 0 1 2 158363526 158363549 mRNA hsa-miR-199b-5p GFM1 miRanda miRanda
2192 chr22 46725347 46725347 1 + C T BLCA 46725349 + 46725329 46725369 41 TCCTCTCATCGACTTCTGCGATACCCCAGAAGCACACGTGG TCCTCTCATCGACTTCTGTGATACCCCAGAAGCACACGTGG < 41bp 0.867626483209664 0.664063049103786 0.47575203 0.2318745 prediction 0.407126868211757 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46725349 chr22:46725347 synonymous SNV . 0 19 hm1A_associated_SNPs_16517 0 0 1 2 46725340 46725367 mRNA hsa-miR-187 GTSE1 miRanda miRanda
2192 chr22 46725347 46725347 1 + C T BLCA 46725349 + 46725329 46725369 41 TCCTCTCATCGACTTCTGCGATACCCCAGAAGCACACGTGG TCCTCTCATCGACTTCTGTGATACCCCAGAAGCACACGTGG < 41bp 0.867626483209664 0.664063049103786 0.47575203 0.2318745 prediction 0.407126868211757 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46725349 chr22:46725347 synonymous SNV . 0 19 hm1A_associated_SNPs_16517 0 0 1 2 46725345 46725365 mRNA hsa-miR-218 GTSE1 miRanda miRanda
2192 chrX 122387197 122387197 1 + C A COAD 122387199 + 122387179 122387219 41 GTATGCCATCTTTGGATTCTATGACCAGATGTCAATGAACA GTATGCCATCTTTGGATTATATGACCAGATGTCAATGAACA < 41bp 0.819167482492241 0.615609556172512 0.12629646 0.11101329 prediction 0.407115852639458 Functional Loss - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122387199 chrX:122387197 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_16521 0 0 0 2 122387183 122387203 mRNA hsa-miR-376a GRIA3 miRanda miRanda
2192 chrX 122387197 122387197 1 + C A COAD 122387199 + 122387179 122387219 41 GTATGCCATCTTTGGATTCTATGACCAGATGTCAATGAACA GTATGCCATCTTTGGATTATATGACCAGATGTCAATGAACA < 41bp 0.819167482492241 0.615609556172512 0.12629646 0.11101329 prediction 0.407115852639458 Functional Loss - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122387199 chrX:122387197 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_16521 0 0 0 2 122387178 122387203 mRNA hsa-miR-376b GRIA3 miRanda miRanda
2192 chr20 44049251 44049251 1 + C A UCEC 44049253 + 44049233 44049273 41 TCGGAAGACCTATGCCATCTATGACTTGCTTGACACCGCCA TCGGAAGACCTATGCCATATATGACTTGCTTGACACCGCCA < 41bp 0.799879325502102 0.596364633057345 0.16695276 0.15934482 prediction 0.407029384889514 Functional Loss - PIGT ENSG00000124155 CDS Human protein_coding chr20:44049253 chr20:44049251 synonymous SNV . 0 19 hm1A_associated_SNPs_16536 0 0 1 2 44049236 44049257 mRNA hsa-miR-376a PIGT miRanda miRanda
2192 chr20 44049251 44049251 1 + C A UCEC 44049253 + 44049233 44049273 41 TCGGAAGACCTATGCCATCTATGACTTGCTTGACACCGCCA TCGGAAGACCTATGCCATATATGACTTGCTTGACACCGCCA < 41bp 0.799879325502102 0.596364633057345 0.16695276 0.15934482 prediction 0.407029384889514 Functional Loss - PIGT ENSG00000124155 CDS Human protein_coding chr20:44049253 chr20:44049251 synonymous SNV . 0 19 hm1A_associated_SNPs_16536 0 0 1 2 44049235 44049257 mRNA hsa-miR-376b PIGT miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193340 84193364 mRNA hsa-miR-17 LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193340 84193364 mRNA hsa-miR-20a LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193340 84193364 mRNA hsa-miR-93 LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193340 84193364 mRNA hsa-miR-106a LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193340 84193364 mRNA hsa-miR-155 LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193342 84193364 mRNA hsa-miR-106b LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193341 84193363 mRNA hsa-miR-302a LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193341 84193363 mRNA hsa-miR-302b LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193341 84193363 mRNA hsa-miR-302c LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193341 84193363 mRNA hsa-miR-302d LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193341 84193363 mRNA hsa-miR-372 LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193341 84193363 mRNA hsa-miR-373 LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193340 84193364 mRNA hsa-miR-20b LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193342 84193363 mRNA hsa-miR-520e LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193342 84193363 mRNA hsa-miR-520a-3p LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193342 84193363 mRNA hsa-miR-520b LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193341 84193363 mRNA hsa-miR-520c-3p LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193342 84193364 mRNA hsa-miR-519d LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193339 84193363 mRNA hsa-miR-520d-3p LRRC50 miRanda miRanda
2192 chr16 84193349 84193349 1 + C T LUSC 84193351 + 84193331 84193371 41 AGAAGGACAGTCACTGTACGACTAAAGCACTTAACATACCT AGAAGGACAGTCACTGTATGACTAAAGCACTTAACATACCT < 41bp 0.703292171803362 0.428926522670671 0.084611386 0.06900549 prediction 0.406584343606724 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84193351 chr16:84193349 stopgain 0.651 1 19 hm1A_associated_SNPs_16586 1 0 0 20 84193347 84193363 mRNA hsa-miR-302e LRRC50 miRanda miRanda
2192 chr11 65715209 65715209 1 + C T STAD 65715211 + 65715191 65715231 41 TTCAACAACCTCCGAAGGCGACAATGGAGGAAGACAAGGGC TTCAACAACCTCCGAAGGTGACAATGGAGGAAGACAAGGGC < 41bp 0.728118328137197 0.524899782539743 0.58792186 0.53441805 prediction 0.406437091194909 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65715211 chr11:65715209 unknown 0.002 0 19 hm1A_associated_SNPs_16600 0 0 0 1 65715194 65715220 mRNA hsa-miR-136 TSGA10IP miRanda miRanda
2192 chrX 48559040 48559040 1 + C T UCEC 48559042 + 48559022 48559062 41 GTGGTACAGAAGGGTATCCGATATGACCTCTGCATCTTCCG GTGGTACAGAAGGGTATCTGATATGACCTCTGCATCTTCCG < 41bp 0.864510372505167 0.661306069737274 0.457561 0.16768762 prediction 0.406408605535786 Functional Loss - SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48559042 chrX:48559040 stopgain 0.988 0 19 hm1A_associated_SNPs_16606 0 0 0 1 48559037 48559058 mRNA hsa-miR-383 SUV39H1 miRanda miRanda
2192 chr20 31787203 31787203 1 + C T UCEC 31787205 + 31787185 31787225 41 ACCATTGAGTAGTGCCTTCGATGGTGTATCAGGCCTCCTGG ACCATTGAGTAGTGCCTTTGATGGTGTATCAGGCCTCCTGG < 41bp 0.772155574616697 0.569008689478334 0.3574801 0.13694394 prediction 0.406293770276726 Functional Loss - BPIFA4P ENSG00000183566 ncRNA_exonic Human transcribed_unitary_pseudogene chr20:31787205 chr20:31787203 . . 0 19 hm1A_associated_SNPs_16618 0 0 0 2 31787185 31787203 mRNA hsa-miR-124 BASE miRanda miRanda
2192 chr20 31787203 31787203 1 + C T UCEC 31787205 + 31787185 31787225 41 ACCATTGAGTAGTGCCTTCGATGGTGTATCAGGCCTCCTGG ACCATTGAGTAGTGCCTTTGATGGTGTATCAGGCCTCCTGG < 41bp 0.772155574616697 0.569008689478334 0.3574801 0.13694394 prediction 0.406293770276726 Functional Loss - BPIFA4P ENSG00000183566 ncRNA_exonic Human transcribed_unitary_pseudogene chr20:31787205 chr20:31787203 . . 0 19 hm1A_associated_SNPs_16618 0 0 0 2 31787185 31787203 mRNA hsa-miR-506 BASE miRanda miRanda
2192 chr10 12204267 12204267 1 + C A COAD 12204269 + 12204249 12204289 41 GGGGCCACCGAGATACCTCTATGGTTCATGAGCTTAATAGG GGGGCCACCGAGATACCTATATGGTTCATGAGCTTAATAGG < 41bp 0.703125222921639 0.423381904190266 0.21427205 0.18388802 prediction 0.406250445843279 Functional Loss - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12204269 chr10:12204267 nonsynonymous SNV 0.992 4 19 hm1A_associated_SNPs_16625 0 0 1 1 12204249 12204268 mRNA hsa-miR-202 SEC61A2 miRanda miRanda
2192 chr3 119347623 119347623 1 + C A rs115172544 119347625 + 119347605 119347645 41 GATAAACCAAGTGAAATTCAAGTTTCAGTCTTCCAACCGAG GATAAACCAAGTGAAATTAAAGTTTCAGTCTTCCAACCGAG < 41bp 0.702997056886831 0.463229109284658 0.17730272 0.18348926 prediction 0.405994113773662 Functional Loss - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119347625 chr3:119347623 nonsynonymous SNV 0.157 1 19 hm1A_associated_SNPs_16658 0 0 0 1 119347618 119347639 mRNA hsa-miR-7 PLA1A miRanda miRanda
2192 chr17 29253886 29253886 1 + C T UCEC 29253888 + 29253868 29253908 41 CCGTGTGAAGGCCAAGTTCGAAGCCAGAGTCCCAGCTTTCT CCGTGTGAAGGCCAAGTTTGAAGCCAGAGTCCCAGCTTTCT < 41bp 0.856276569812337 0.653388090023282 0.7282431 0.3967447 prediction 0.405776959578109 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29253888 chr17:29253886 synonymous SNV . 0 19 hm1A_associated_SNPs_16686 0 0 0 2 29253882 29253903 mRNA hsa-miR-378 ADAP2 miRanda miRanda
2192 chr17 29253886 29253886 1 + C T UCEC 29253888 + 29253868 29253908 41 CCGTGTGAAGGCCAAGTTCGAAGCCAGAGTCCCAGCTTTCT CCGTGTGAAGGCCAAGTTTGAAGCCAGAGTCCCAGCTTTCT < 41bp 0.856276569812337 0.653388090023282 0.7282431 0.3967447 prediction 0.405776959578109 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29253888 chr17:29253886 synonymous SNV . 0 19 hm1A_associated_SNPs_16686 0 0 0 2 29253881 29253903 mRNA hsa-miR-422a ADAP2 miRanda miRanda
2192 chr7 73107733 73107733 1 + C T rs79257360 73107735 + 73107715 73107755 41 AGACTACCCTAACAGTGCCAAAGCAAAGAAGTGAGCGCTGG AGACTACCCTAACAGTGCTAAAGCAAAGAAGTGAGCGCTGG < 41bp 0.702861290083117 0.449322053886508 0.42685056 0.4635188 prediction 0.405722580166233 Functional Loss - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73107735 chr7:73107733 synonymous SNV . 0 19 hm1A_associated_SNPs_16694 0 0 1 3 73107714 73107736 mRNA hsa-miR-96 WBSCR22 miRanda miRanda
2192 chr7 73107733 73107733 1 + C T rs79257360 73107735 + 73107715 73107755 41 AGACTACCCTAACAGTGCCAAAGCAAAGAAGTGAGCGCTGG AGACTACCCTAACAGTGCTAAAGCAAAGAAGTGAGCGCTGG < 41bp 0.702861290083117 0.449322053886508 0.42685056 0.4635188 prediction 0.405722580166233 Functional Loss - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73107735 chr7:73107733 synonymous SNV . 0 19 hm1A_associated_SNPs_16694 0 0 1 3 73107733 73107744 mRNA hsa-let-7i WBSCR22 miRanda miRanda
2192 chr7 73107733 73107733 1 + C T rs79257360 73107735 + 73107715 73107755 41 AGACTACCCTAACAGTGCCAAAGCAAAGAAGTGAGCGCTGG AGACTACCCTAACAGTGCTAAAGCAAAGAAGTGAGCGCTGG < 41bp 0.702861290083117 0.449322053886508 0.42685056 0.4635188 prediction 0.405722580166233 Functional Loss - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73107735 chr7:73107733 synonymous SNV . 0 19 hm1A_associated_SNPs_16694 0 0 1 3 73107715 73107736 mRNA hsa-miR-1271 WBSCR22 miRanda miRanda
2192 chr4 737371 737371 1 + T C UCEC 737370 + 737350 737390 41 GCACTTAGATTCCCATCGGAATGGTGAGTGCCCTGCGTGCC GCACTTAGATTCCCATCGGAACGGTGAGTGCCCTGCGTGCC < 41bp 0.765832779092777 0.562997227327462 0.10914534 0.12259564 prediction 0.40567110353063 Functional Loss - PCGF3 ENSG00000185619 CDS Human protein_coding chr4:737370 chr4:737371 synonymous SNV . 0 22 hm1A_associated_SNPs_16698 0 0 0 3 737355 737372 mRNA hsa-miR-23a PCGF3 miRanda miRanda
2192 chr4 737371 737371 1 + T C UCEC 737370 + 737350 737390 41 GCACTTAGATTCCCATCGGAATGGTGAGTGCCCTGCGTGCC GCACTTAGATTCCCATCGGAACGGTGAGTGCCCTGCGTGCC < 41bp 0.765832779092777 0.562997227327462 0.10914534 0.12259564 prediction 0.40567110353063 Functional Loss - PCGF3 ENSG00000185619 CDS Human protein_coding chr4:737370 chr4:737371 synonymous SNV . 0 22 hm1A_associated_SNPs_16698 0 0 0 3 737355 737372 mRNA hsa-miR-23b PCGF3 miRanda miRanda
2192 chr4 737371 737371 1 + T C UCEC 737370 + 737350 737390 41 GCACTTAGATTCCCATCGGAATGGTGAGTGCCCTGCGTGCC GCACTTAGATTCCCATCGGAACGGTGAGTGCCCTGCGTGCC < 41bp 0.765832779092777 0.562997227327462 0.10914534 0.12259564 prediction 0.40567110353063 Functional Loss - PCGF3 ENSG00000185619 CDS Human protein_coding chr4:737370 chr4:737371 synonymous SNV . 0 22 hm1A_associated_SNPs_16698 0 0 0 3 737362 737372 mRNA hsa-miR-9 PCGF3 miRanda miRanda
2192 chr9 100092746 100092746 1 + C T UCEC 100092748 + 100092728 100092768 41 AGAGGTGGAAGAAGAAAACGATCAAGAAATGGAGTCCTTCA AGAGGTGGAAGAAGAAAATGATCAAGAAATGGAGTCCTTCA < 41bp 0.702815362662657 0.423659701506721 0.70809233 0.35058588 prediction 0.405630725325314 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100092748 chr9:100092746 synonymous SNV . 0 19 hm1A_associated_SNPs_16705 0 0 1 1 100092742 100092762 mRNA hsa-miR-136 KIAA1529 miRanda miRanda
2192 chr10 24762236 24762236 1 + C T COAD 24762238 + 24762218 24762258 41 CTGCTCATCCACCCCATGCGATTCCAAATTCCCCACCGTCT CTGCTCATCCACCCCATGTGATTCCAAATTCCCCACCGTCT < 41bp 0.827314248623881 0.624661158775148 0.7178482 0.4533406 prediction 0.405306179697467 Functional Loss - KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24762238 chr10:24762236 nonsynonymous SNV 0.001 0 19 hm1A_associated_SNPs_16745 0 0 1 1 24762233 24762254 mRNA hsa-miR-491-5p KIAA1217 miRanda miRanda
2192 chr17 63223456 63223456 1 + T C LUSC 63223455 + 63223435 63223475 41 CTGCTTGATGGACTCGGAGGATGCTGGAACAGGAGAGTCGG CTGCTTGATGGACTCGGAGGACGCTGGAACAGGAGAGTCGG < 41bp 0.772095699888056 0.56955473327844 0.62943757 0.74236435 prediction 0.405081933219231 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63223455 chr17:63223456 synonymous SNV . 0 22 hm1A_associated_SNPs_16772 0 0 0 1 63223440 63223462 mRNA hsa-miR-338-3p RGS9 miRanda miRanda
2192 chr1 93301854 93301854 1 + C T UCEC 93301856 + 93301836 93301876 41 GCCAGGTGCCTTCACCTGCTATTTGGATGCAGGCCTTGCCA GCCAGGTGCCTTCACCTGTTATTTGGATGCAGGCCTTGCCA < 41bp 0.873123019423399 0.671049260258206 0.0788756 0.0659889 prediction 0.404147518330385 Functional Loss - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93301856 chr1:93301854 synonymous SNV . 0 19 hm1A_associated_SNPs_16879 0 0 1 1 93301832 93301854 mRNA hsa-miR-125a-3p RPL5 miRanda miRanda
2192 chr3 9712787 9712787 1 + C T UCEC 9712789 + 9712769 9712809 41 TATGACATCAAGCTGCTTCGATACCTGTCAGTCAAATACAT TATGACATCAAGCTGCTTTGATACCTGTCAGTCAAATACAT < 41bp 0.886980192255954 0.685212190584406 0.61747116 0.090112805 prediction 0.403536003343097 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9712789 chr3:9712787 stopgain 0.999 1 19 hm1A_associated_SNPs_16955 0 0 1 1 9712781 9712804 mRNA hsa-miR-134 MTMR14 miRanda miRanda
2192 chr3 122821308 122821308 1 + C G rs377598783 122821310 + 122821290 122821330 41 TGAAAGTTGACCTGAGCCCGAAGGACAAAAAGGTTGAATTA TGAAAGTTGACCTGAGCCGGAAGGACAAAAAGGTTGAATTA < 41bp 0.749793001969383 0.548029329863067 0.32898104 0.37772775 prediction 0.403527344212632 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122821310 chr3:122821308 nonsynonymous SNV 0.994 1 19 hm1A_associated_SNPs_16956 0 0 1 1 122821287 122821308 mRNA hsa-miR-24 PDIA5 miRanda miRanda
2192 chr12 110924413 110924413 1 + C T UCEC 110924415 + 110924395 110924435 41 TACCCTTGCACTACATGGCGACATCAACTGGAGAGAGAGGA TACCCTTGCACTACATGGTGACATCAACTGGAGAGAGAGGA < 41bp 0.701644727563005 0.390484017348994 0.1963368 0.13709807 prediction 0.403289455126009 Functional Loss - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110924415 chr12:110924413 stopgain 0.998 0 19 hm1A_associated_SNPs_16986 0 0 1 1 110924401 110924427 mRNA hsa-miR-145 C12orf24 miRanda miRanda
2192 chr20 42275617 42275617 1 + T C BRCA 42275616 + 42275596 42275636 41 TGAAACAGCATTCCAGAACAATTTCTGAAGACCATGCCTCT TGAAACAGCATTCCAGAACAACTTCTGAAGACCATGCCTCT < 41bp 0.803554302081773 0.602036801612565 0.102481306 0.11475086 prediction 0.403035000938418 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42275616 chr20:42275617 synonymous SNV . 0 22 hm1A_associated_SNPs_17025 0 0 1 1 42275614 42275636 mRNA hsa-miR-485-5p IFT52 miRanda miRanda
2192 chr9 127230383 127230383 1 + C A rs545086542 127230385 + 127230365 127230405 41 AGGGTCCCCAAGTCAGAGCGAACCACAGTCCACAAGAACCT AGGGTCCCCAAGTCAGAGAGAACCACAGTCCACAAGAACCT < 41bp 0.701513842709432 0.460228920455542 0.3550247 0.21068814 prediction 0.403027685418863 Functional Loss - PSMB7;NR5A1 ENSG00000180264 CDS Human protein_coding chr9:127230385 chr9:127230383 synonymous SNV . 0 19 hm1A_associated_SNPs_17027 0 0 0 1 127230377 127230400 mRNA hsa-miR-758 GPR144 miRanda miRanda
2192 chr1 93303108 93303108 1 + T C STAD 93303107 + 93303087 93303127 41 GCCAGAATGTTGCAGATTACATGCGCTACTTAATGGAAGAA GCCAGAATGTTGCAGATTACACGCGCTACTTAATGGAAGAA < 41bp 0.737400589480659 0.535976252346964 0.12528819 0.17010713 prediction 0.402848674267391 Functional Loss - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93303107 chr1:93303108 nonsynonymous SNV 0.982 2 22 hm1A_associated_SNPs_17048 0 0 1 1 93303101 93303125 mRNA hsa-miR-136 RPL5 miRanda miRanda
2192 chr21 46021934 46021934 1 + C T rs398680 46021936 + 46021916 46021956 41 GCCCGGTGTGGGGAGAAACGAGGGTAGACACGTACCAACTG GCCCGGTGTGGGGAGAAATGAGGGTAGACACGTACCAACTG < 41bp 0.715574664587137 0.514190235618656 0.46647963 0.37347338 prediction 0.402768857936962 Functional Loss - KRTAP10-7 ENSG00000205441 UTR3 Human other chr21:46021936 chr21:46021934 . . 0 19 hm1A_associated_SNPs_17063 0 0 0 2 46021927 46021948 mRNA hsa-miR-187 KRTAP10-7 miRanda miRanda
2192 chr21 46021934 46021934 1 + C T rs398680 46021936 + 46021916 46021956 41 GCCCGGTGTGGGGAGAAACGAGGGTAGACACGTACCAACTG GCCCGGTGTGGGGAGAAATGAGGGTAGACACGTACCAACTG < 41bp 0.715574664587137 0.514190235618656 0.46647963 0.37347338 prediction 0.402768857936962 Functional Loss - KRTAP10-7 ENSG00000205441 UTR3 Human other chr21:46021936 chr21:46021934 . . 0 19 hm1A_associated_SNPs_17063 0 0 0 2 46021926 46021951 mRNA hsa-miR-142-3p KRTAP10-7 miRanda miRanda
2192 chr8 24187604 24187604 1 + T C LGG 24187603 + 24187583 24187623 41 CTTGCAAGTGTCCTTCTACAATATGTGTGATGGACAAAGCA CTTGCAAGTGTCCTTCTACAACATGTGTGATGGACAAAGCA < 41bp 0.76909355422426 0.567766234027631 0.12419212 0.14930063 prediction 0.402654640393257 Functional Loss - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24187603 chr8:24187604 nonsynonymous SNV 0.105 0 22 hm1A_associated_SNPs_17077 0 0 0 1 24187592 24187613 mRNA hsa-miR-377 ADAM28 miRanda miRanda
2192 chr19 56694547 56694547 1 + T C UCEC 56694546 + 56694526 56694566 41 TCCACAGCCCTCCAAGAGGAATGTGATGGAGACGTTTGCCA TCCACAGCCCTCCAAGAGGAACGTGATGGAGACGTTTGCCA < 41bp 0.723609201967145 0.522338107146518 0.22452918 0.23632118 prediction 0.402542189641254 Functional Loss - GALP ENSG00000197487 CDS Human protein_coding chr19:56694546 chr19:56694547 synonymous SNV . 0 22 hm1A_associated_SNPs_17095 0 0 0 1 56694545 56694568 mRNA hsa-miR-182 GALP miRanda miRanda
2192 chr20 9511062 9511062 1 + T A rs112685122 9511061 + 9511041 9511081 41 AGAAAACGACTAATGTAACTATGCAGAGTTGTTTGGACTTC AGAAAACGACTAATGTAACTAAGCAGAGTTGTTTGGACTTC < 41bp 0.774391186049508 0.573127624345915 0.2565925 0.1884138 prediction 0.402527123407185 Functional Loss - LAMP5 ENSG00000125869 UTR3 Human protein_coding chr20:9511061 chr20:9511062 . . 0 22 hm1A_associated_SNPs_17097 0 0 0 1 9511045 9511066 mRNA hsa-miR-153 C20orf103 miRanda miRanda
2192 chr6 55128552 55128552 1 + T C PAAD 55128551 + 55128531 55128571 41 ATCTGTTTCTTTCTGGTGACATACATGGCACCACTGTGTCT ATCTGTTTCTTTCTGGTGACACACATGGCACCACTGTGTCT < 41bp 0.761734861069072 0.56073247832239 0.09870911 0.09401178 prediction 0.402004765493365 Functional Loss - HCRTR2 ENSG00000137252 CDS Human protein_coding chr6:55128551 chr6:55128552 nonsynonymous SNV 1.000 4 22 hm1A_associated_SNPs_17156 0 0 0 1 55128549 55128569 mRNA hsa-miR-128 HCRTR2 miRanda miRanda
2192 chr1 35223874 35223874 1 + T C rs542727908 35223873 + 35223853 35223893 41 AGGGGCAGGCAAGAGAGAGGATTCAGACGCTCTGGGAGCCA AGGGGCAGGCAAGAGAGAGGACTCAGACGCTCTGGGAGCCA < 41bp 0.720201264269384 0.519333682711663 0.19601443 0.23249051 prediction 0.401735163115442 Functional Loss - GJB5 ENSG00000189280 UTR3 Human protein_coding chr1:35223873 chr1:35223874 . . 0 22 hm1A_associated_SNPs_17193 0 0 0 1 35223869 35223895 mRNA hsa-miR-149 GJB5 miRanda miRanda
2192 chr17 55123141 55123141 1 + C T UCEC 55123143 + 55123123 55123163 41 TGCTTTCGGCATCTTTGACGACAGCTTCGAGATCCCCACGT TGCTTTCGGCATCTTTGATGACAGCTTCGAGATCCCCACGT < 41bp 0.778796832626902 0.577972173358488 0.6696469 0.5821999 prediction 0.401649318536827 Functional Loss - RNF126P1 ENSG00000261192 ncRNA_exonic Human transcribed_processed_pseudogene chr17:55123143 chr17:55123141 . . 0 19 hm1A_associated_SNPs_17206 0 0 0 1 55123141 55123162 mRNA hsa-miR-491-5p RNF126P1 miRanda miRanda
2192 chr2 89100645 89100645 1 + C A LUAD 89100647 + 89100627 89100667 41 TGCTCGCAACAAAGCTGACAATCAAGAAAAGGCAATACTTA TGCTCGCAACAAAGCTGAAAATCAAGAAAAGGCAATACTTA < 41bp 0.81947056133814 0.618721687874482 0.0827699 0.05974123 prediction 0.401497746927315 Functional Loss - ANKRD36BP2 ENSG00000230006 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:89100647 chr2:89100645 . . 0 19 hm1A_associated_SNPs_17235 0 0 0 1 89100630 89100650 mRNA hsa-miR-219-5p FLJ40330 miRanda miRanda
2192 chr2 190660525 190660525 1 + C T GBM 190660527 + 190660507 190660547 41 TTTGATAAAATTGAGGTGCGAGATAACGGGGAGGGTATCAA TTTGATAAAATTGAGGTGTGAGATAACGGGGAGGGTATCAA < 41bp 0.700665354067505 0.459881774731525 0.20185506 0.1507104 prediction 0.401330708135009 Functional Loss - PMS1 ENSG00000064933 CDS Human protein_coding chr2:190660527 chr2:190660525 stopgain 0.923 1 19 hm1A_associated_SNPs_17257 0 0 1 1 190660523 190660545 mRNA hsa-miR-875-5p PMS1 miRanda miRanda
2192 chr7 5334507 5334507 1 + C A UCEC 5334509 + 5334489 5334529 41 AGTGCAGCAATCCAGCTTCTACGGGTACACGGGGATGCTGC AGTGCAGCAATCCAGCTTATACGGGTACACGGGGATGCTGC < 41bp 0.818023008459708 0.61742883172967 0.26457188 0.12068161 prediction 0.401188353460075 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5334509 chr7:5334507 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_17278 0 0 0 4 5334494 5334515 mRNA hsa-miR-99a SLC29A4 miRanda miRanda
2192 chr7 5334507 5334507 1 + C A UCEC 5334509 + 5334489 5334529 41 AGTGCAGCAATCCAGCTTCTACGGGTACACGGGGATGCTGC AGTGCAGCAATCCAGCTTATACGGGTACACGGGGATGCTGC < 41bp 0.818023008459708 0.61742883172967 0.26457188 0.12068161 prediction 0.401188353460075 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5334509 chr7:5334507 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_17278 0 0 0 4 5334494 5334515 mRNA hsa-miR-100 SLC29A4 miRanda miRanda
2192 chr7 5334507 5334507 1 + C A UCEC 5334509 + 5334489 5334529 41 AGTGCAGCAATCCAGCTTCTACGGGTACACGGGGATGCTGC AGTGCAGCAATCCAGCTTATACGGGTACACGGGGATGCTGC < 41bp 0.818023008459708 0.61742883172967 0.26457188 0.12068161 prediction 0.401188353460075 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5334509 chr7:5334507 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_17278 0 0 0 4 5334494 5334515 mRNA hsa-miR-99b SLC29A4 miRanda miRanda
2192 chr7 5334507 5334507 1 + C A UCEC 5334509 + 5334489 5334529 41 AGTGCAGCAATCCAGCTTCTACGGGTACACGGGGATGCTGC AGTGCAGCAATCCAGCTTATACGGGTACACGGGGATGCTGC < 41bp 0.818023008459708 0.61742883172967 0.26457188 0.12068161 prediction 0.401188353460075 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5334509 chr7:5334507 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_17278 0 0 0 4 5334507 5334527 mRNA hsa-miR-324-5p SLC29A4 miRanda miRanda
2192 chr10 131959078 131959078 1 + C T SKCM 131959080 + 131959060 131959100 41 AATTCTCAGAAAATCGACCGATTAGATGGTGCACATGCCCC AATTCTCAGAAAATCGACTGATTAGATGGTGCACATGCCCC < 41bp 0.875087446293671 0.674602578764348 0.38480902 0.11217794 prediction 0.400969735058646 Functional Loss - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131959080 chr10:131959078 stopgain 1.000 1 19 hm1A_associated_SNPs_17309 0 0 1 5 131959072 131959096 mRNA hsa-miR-25 GLRX3 miRanda miRanda
2192 chr10 131959078 131959078 1 + C T SKCM 131959080 + 131959060 131959100 41 AATTCTCAGAAAATCGACCGATTAGATGGTGCACATGCCCC AATTCTCAGAAAATCGACTGATTAGATGGTGCACATGCCCC < 41bp 0.875087446293671 0.674602578764348 0.38480902 0.11217794 prediction 0.400969735058646 Functional Loss - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131959080 chr10:131959078 stopgain 1.000 1 19 hm1A_associated_SNPs_17309 0 0 1 5 131959077 131959099 mRNA hsa-miR-34a GLRX3 miRanda miRanda
2192 chr10 131959078 131959078 1 + C T SKCM 131959080 + 131959060 131959100 41 AATTCTCAGAAAATCGACCGATTAGATGGTGCACATGCCCC AATTCTCAGAAAATCGACTGATTAGATGGTGCACATGCCCC < 41bp 0.875087446293671 0.674602578764348 0.38480902 0.11217794 prediction 0.400969735058646 Functional Loss - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131959080 chr10:131959078 stopgain 1.000 1 19 hm1A_associated_SNPs_17309 0 0 1 5 131959077 131959099 mRNA hsa-miR-34c-5p GLRX3 miRanda miRanda
2192 chr10 131959078 131959078 1 + C T SKCM 131959080 + 131959060 131959100 41 AATTCTCAGAAAATCGACCGATTAGATGGTGCACATGCCCC AATTCTCAGAAAATCGACTGATTAGATGGTGCACATGCCCC < 41bp 0.875087446293671 0.674602578764348 0.38480902 0.11217794 prediction 0.400969735058646 Functional Loss - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131959080 chr10:131959078 stopgain 1.000 1 19 hm1A_associated_SNPs_17309 0 0 1 5 131959076 131959099 mRNA hsa-miR-449a GLRX3 miRanda miRanda
2192 chr10 131959078 131959078 1 + C T SKCM 131959080 + 131959060 131959100 41 AATTCTCAGAAAATCGACCGATTAGATGGTGCACATGCCCC AATTCTCAGAAAATCGACTGATTAGATGGTGCACATGCCCC < 41bp 0.875087446293671 0.674602578764348 0.38480902 0.11217794 prediction 0.400969735058646 Functional Loss - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131959080 chr10:131959078 stopgain 1.000 1 19 hm1A_associated_SNPs_17309 0 0 1 5 131959076 131959099 mRNA hsa-miR-449b GLRX3 miRanda miRanda
2192 chr6 31692833 31692833 1 + C T UCEC 31692835 + 31692815 31692855 41 TGCTGATGCCTCCACCATCTATGCAGTTGTAGTTTGAAGGG TGCTGATGCCTCCACCATTTATGCAGTTGTAGTTTGAAGGG < 41bp 0.703387678518136 0.502972567644938 0.27079856 0.22457418 prediction 0.400830221746396 Functional Loss - MPIG6B ENSG00000204420 CDS Human protein_coding chr6:31692835 chr6:31692833 synonymous SNV . 0 19 hm1A_associated_SNPs_17327 0 0 0 11 31692821 31692842 mRNA hsa-miR-217 C6orf25 miRanda miRanda
2192 chr6 31692833 31692833 1 + C T UCEC 31692835 + 31692815 31692855 41 TGCTGATGCCTCCACCATCTATGCAGTTGTAGTTTGAAGGG TGCTGATGCCTCCACCATTTATGCAGTTGTAGTTTGAAGGG < 41bp 0.703387678518136 0.502972567644938 0.27079856 0.22457418 prediction 0.400830221746396 Functional Loss - MPIG6B ENSG00000204420 CDS Human protein_coding chr6:31692835 chr6:31692833 synonymous SNV . 0 19 hm1A_associated_SNPs_17327 0 0 0 11 31692819 31692840 mRNA hsa-miR-153 C6orf25 miRanda miRanda
2192 chr6 31692833 31692833 1 + C T UCEC 31692835 + 31692815 31692855 41 TGCTGATGCCTCCACCATCTATGCAGTTGTAGTTTGAAGGG TGCTGATGCCTCCACCATTTATGCAGTTGTAGTTTGAAGGG < 41bp 0.703387678518136 0.502972567644938 0.27079856 0.22457418 prediction 0.400830221746396 Functional Loss - MPIG6B ENSG00000204420 CDS Human protein_coding chr6:31692835 chr6:31692833 synonymous SNV . 0 19 hm1A_associated_SNPs_17327 0 0 0 11 31692821 31692840 mRNA hsa-miR-153 C6orf25 miRanda miRanda
2192 chr6 31692833 31692833 1 + C T UCEC 31692835 + 31692815 31692855 41 TGCTGATGCCTCCACCATCTATGCAGTTGTAGTTTGAAGGG TGCTGATGCCTCCACCATTTATGCAGTTGTAGTTTGAAGGG < 41bp 0.703387678518136 0.502972567644938 0.27079856 0.22457418 prediction 0.400830221746396 Functional Loss - MPIG6B ENSG00000204420 CDS Human protein_coding chr6:31692835 chr6:31692833 synonymous SNV . 0 19 hm1A_associated_SNPs_17327 0 0 0 11 31692819 31692839 mRNA hsa-miR-376c C6orf25 miRanda miRanda
2192 chr6 31692833 31692833 1 + C T UCEC 31692835 + 31692815 31692855 41 TGCTGATGCCTCCACCATCTATGCAGTTGTAGTTTGAAGGG TGCTGATGCCTCCACCATTTATGCAGTTGTAGTTTGAAGGG < 41bp 0.703387678518136 0.502972567644938 0.27079856 0.22457418 prediction 0.400830221746396 Functional Loss - MPIG6B ENSG00000204420 CDS Human protein_coding chr6:31692835 chr6:31692833 synonymous SNV . 0 19 hm1A_associated_SNPs_17327 0 0 0 11 31692821 31692839 mRNA hsa-miR-376c C6orf25 miRanda miRanda
2192 chr6 31692833 31692833 1 + C T UCEC 31692835 + 31692815 31692855 41 TGCTGATGCCTCCACCATCTATGCAGTTGTAGTTTGAAGGG TGCTGATGCCTCCACCATTTATGCAGTTGTAGTTTGAAGGG < 41bp 0.703387678518136 0.502972567644938 0.27079856 0.22457418 prediction 0.400830221746396 Functional Loss - MPIG6B ENSG00000204420 CDS Human protein_coding chr6:31692835 chr6:31692833 synonymous SNV . 0 19 hm1A_associated_SNPs_17327 0 0 0 11 31692819 31692839 mRNA hsa-miR-376a C6orf25 miRanda miRanda
2192 chr6 31692833 31692833 1 + C T UCEC 31692835 + 31692815 31692855 41 TGCTGATGCCTCCACCATCTATGCAGTTGTAGTTTGAAGGG TGCTGATGCCTCCACCATTTATGCAGTTGTAGTTTGAAGGG < 41bp 0.703387678518136 0.502972567644938 0.27079856 0.22457418 prediction 0.400830221746396 Functional Loss - MPIG6B ENSG00000204420 CDS Human protein_coding chr6:31692835 chr6:31692833 synonymous SNV . 0 19 hm1A_associated_SNPs_17327 0 0 0 11 31692821 31692839 mRNA hsa-miR-376a C6orf25 miRanda miRanda
2192 chr6 31692833 31692833 1 + C T UCEC 31692835 + 31692815 31692855 41 TGCTGATGCCTCCACCATCTATGCAGTTGTAGTTTGAAGGG TGCTGATGCCTCCACCATTTATGCAGTTGTAGTTTGAAGGG < 41bp 0.703387678518136 0.502972567644938 0.27079856 0.22457418 prediction 0.400830221746396 Functional Loss - MPIG6B ENSG00000204420 CDS Human protein_coding chr6:31692835 chr6:31692833 synonymous SNV . 0 19 hm1A_associated_SNPs_17327 0 0 0 11 31692819 31692840 mRNA hsa-miR-448 C6orf25 miRanda miRanda
2192 chr6 31692833 31692833 1 + C T UCEC 31692835 + 31692815 31692855 41 TGCTGATGCCTCCACCATCTATGCAGTTGTAGTTTGAAGGG TGCTGATGCCTCCACCATTTATGCAGTTGTAGTTTGAAGGG < 41bp 0.703387678518136 0.502972567644938 0.27079856 0.22457418 prediction 0.400830221746396 Functional Loss - MPIG6B ENSG00000204420 CDS Human protein_coding chr6:31692835 chr6:31692833 synonymous SNV . 0 19 hm1A_associated_SNPs_17327 0 0 0 11 31692821 31692840 mRNA hsa-miR-448 C6orf25 miRanda miRanda
2192 chr6 31692833 31692833 1 + C T UCEC 31692835 + 31692815 31692855 41 TGCTGATGCCTCCACCATCTATGCAGTTGTAGTTTGAAGGG TGCTGATGCCTCCACCATTTATGCAGTTGTAGTTTGAAGGG < 41bp 0.703387678518136 0.502972567644938 0.27079856 0.22457418 prediction 0.400830221746396 Functional Loss - MPIG6B ENSG00000204420 CDS Human protein_coding chr6:31692835 chr6:31692833 synonymous SNV . 0 19 hm1A_associated_SNPs_17327 0 0 0 11 31692817 31692839 mRNA hsa-miR-376b C6orf25 miRanda miRanda
2192 chr6 31692833 31692833 1 + C T UCEC 31692835 + 31692815 31692855 41 TGCTGATGCCTCCACCATCTATGCAGTTGTAGTTTGAAGGG TGCTGATGCCTCCACCATTTATGCAGTTGTAGTTTGAAGGG < 41bp 0.703387678518136 0.502972567644938 0.27079856 0.22457418 prediction 0.400830221746396 Functional Loss - MPIG6B ENSG00000204420 CDS Human protein_coding chr6:31692835 chr6:31692833 synonymous SNV . 0 19 hm1A_associated_SNPs_17327 0 0 0 11 31692821 31692839 mRNA hsa-miR-376b C6orf25 miRanda miRanda
2192 chrX 151908922 151908922 1 + C A rs112731911 151908924 + 151908904 151908944 41 ACAACCACCCATCAACACCAAAGAGGCGAGGAAGGGGAAAG ACAACCACCCATCAACACAAAAGAGGCGAGGAAGGGGAAAG < 41bp 0.700334930132624 0.449190828678097 0.24930015 0.2569153 prediction 0.400669860265248 Functional Loss - CSAG1 ENSG00000198930 CDS Human protein_coding chrX:151908924 chrX:151908922 nonsynonymous SNV . 0 19 hm1A_associated_SNPs_17346 0 0 1 1 151908904 151908927 mRNA hsa-miR-9 CSAG1 miRanda miRanda
2192 chr3 9712777 9712777 1 + C G BLCA 9712779 + 9712759 9712799 41 GGTCAGAGGCTATGACATCAAGCTGCTTCGATACCTGTCAG GGTCAGAGGCTATGACATGAAGCTGCTTCGATACCTGTCAG < 41bp 0.700318524854267 0.495136107841909 0.12091851 0.13225919 prediction 0.400637049708534 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9712779 chr3:9712777 stopgain 0.999 5 19 hm1A_associated_SNPs_17349 0 0 1 1 9712760 9712783 mRNA hsa-miR-590-5p MTMR14 miRanda miRanda
2192 chr6 17539604 17539604 1 + C T SKCM 17539606 + 17539586 17539626 41 AGGGCCACCTCCACTTTTCGAGAATGAAGGCAAAAAAGAGG AGGGCCACCTCCACTTTTTGAGAATGAAGGCAAAAAAGAGG < 41bp 0.700302725750928 0.426438748943106 0.31228718 0.20514521 prediction 0.400605451501855 Functional Loss - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17539606 chr6:17539604 synonymous SNV . 0 19 hm1A_associated_SNPs_17358 0 0 0 2 17539602 17539622 mRNA hsa-miR-129-5p CAP2 miRanda miRanda
2192 chr6 17539604 17539604 1 + C T SKCM 17539606 + 17539586 17539626 41 AGGGCCACCTCCACTTTTCGAGAATGAAGGCAAAAAAGAGG AGGGCCACCTCCACTTTTTGAGAATGAAGGCAAAAAAGAGG < 41bp 0.700302725750928 0.426438748943106 0.31228718 0.20514521 prediction 0.400605451501855 Functional Loss - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17539606 chr6:17539604 synonymous SNV . 0 19 hm1A_associated_SNPs_17358 0 0 0 2 17539595 17539616 mRNA hsa-miR-205 CAP2 miRanda miRanda
2192 chr20 2840953 2840953 1 + T C UCEC 2840952 + 2840932 2840972 41 GCTGCTCTGTGTGCAGGAAGATGGTGCTGTACTGGTTTATG GCTGCTCTGTGTGCAGGAAGACGGTGCTGTACTGGTTTATG < 41bp 0.754916496003819 0.554625225286132 0.2699439 0.3382513 prediction 0.400582541435375 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840952 chr20:2840953 synonymous SNV . 0 22 hm1A_associated_SNPs_17361 0 0 1 3 2840939 2840960 mRNA hsa-miR-29a VPS16 miRanda miRanda
2192 chr20 2840953 2840953 1 + T C UCEC 2840952 + 2840932 2840972 41 GCTGCTCTGTGTGCAGGAAGATGGTGCTGTACTGGTTTATG GCTGCTCTGTGTGCAGGAAGACGGTGCTGTACTGGTTTATG < 41bp 0.754916496003819 0.554625225286132 0.2699439 0.3382513 prediction 0.400582541435375 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840952 chr20:2840953 synonymous SNV . 0 22 hm1A_associated_SNPs_17361 0 0 1 3 2840938 2840960 mRNA hsa-miR-29b VPS16 miRanda miRanda
2192 chr20 2840953 2840953 1 + T C UCEC 2840952 + 2840932 2840972 41 GCTGCTCTGTGTGCAGGAAGATGGTGCTGTACTGGTTTATG GCTGCTCTGTGTGCAGGAAGACGGTGCTGTACTGGTTTATG < 41bp 0.754916496003819 0.554625225286132 0.2699439 0.3382513 prediction 0.400582541435375 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840952 chr20:2840953 synonymous SNV . 0 22 hm1A_associated_SNPs_17361 0 0 1 3 2840939 2840960 mRNA hsa-miR-29c VPS16 miRanda miRanda
2192 chr16 4700454 4700454 1 + T C STAD 4700453 + 4700433 4700473 41 CCTCTTTGGAGAGAACATGGATCTGAACTTCCTGGGCAGCC CCTCTTTGGAGAGAACATGGACCTGAACTTCCTGGGCAGCC < 41bp 0.700288336326196 0.484199902840686 0.27469152 0.25659132 prediction 0.400576672652392 Functional Loss - MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4700453 chr16:4700454 synonymous SNV . 0 22 hm1A_associated_SNPs_17364 0 0 1 1 4700430 4700454 mRNA hsa-miR-145 MGRN1 miRanda miRanda
2192 chr11 46342570 46342570 1 + C G rs541011953 46342572 + 46342552 46342592 41 TCTCTCATATGCCCAACACGACCACTGCCTCCCTGCCCCCA TCTCTCATATGCCCAACAGGACCACTGCCTCCCTGCCCCCA < 41bp 0.700281844254806 0.456105116351296 0.24336645 0.15514365 prediction 0.400563688509612 Functional Loss - CREB3L1 ENSG00000157613 UTR3 Human protein_coding chr11:46342572 chr11:46342570 . . 0 19 hm1A_associated_SNPs_17366 0 0 0 4 46342560 46342581 mRNA hsa-miR-34a CREB3L1 miRanda miRanda
2192 chr11 46342570 46342570 1 + C G rs541011953 46342572 + 46342552 46342592 41 TCTCTCATATGCCCAACACGACCACTGCCTCCCTGCCCCCA TCTCTCATATGCCCAACAGGACCACTGCCTCCCTGCCCCCA < 41bp 0.700281844254806 0.456105116351296 0.24336645 0.15514365 prediction 0.400563688509612 Functional Loss - CREB3L1 ENSG00000157613 UTR3 Human protein_coding chr11:46342572 chr11:46342570 . . 0 19 hm1A_associated_SNPs_17366 0 0 0 4 46342558 46342581 mRNA hsa-miR-34c-5p CREB3L1 miRanda miRanda
2192 chr11 46342570 46342570 1 + C G rs541011953 46342572 + 46342552 46342592 41 TCTCTCATATGCCCAACACGACCACTGCCTCCCTGCCCCCA TCTCTCATATGCCCAACAGGACCACTGCCTCCCTGCCCCCA < 41bp 0.700281844254806 0.456105116351296 0.24336645 0.15514365 prediction 0.400563688509612 Functional Loss - CREB3L1 ENSG00000157613 UTR3 Human protein_coding chr11:46342572 chr11:46342570 . . 0 19 hm1A_associated_SNPs_17366 0 0 0 4 46342559 46342581 mRNA hsa-miR-449a CREB3L1 miRanda miRanda
2192 chr11 46342570 46342570 1 + C G rs541011953 46342572 + 46342552 46342592 41 TCTCTCATATGCCCAACACGACCACTGCCTCCCTGCCCCCA TCTCTCATATGCCCAACAGGACCACTGCCTCCCTGCCCCCA < 41bp 0.700281844254806 0.456105116351296 0.24336645 0.15514365 prediction 0.400563688509612 Functional Loss - CREB3L1 ENSG00000157613 UTR3 Human protein_coding chr11:46342572 chr11:46342570 . . 0 19 hm1A_associated_SNPs_17366 0 0 0 4 46342559 46342581 mRNA hsa-miR-449b CREB3L1 miRanda miRanda
2192 chr7 65751534 65751534 1 + C G CESC 65751536 + 65751516 65751556 41 CCAAGTAATCAAGCCAGTCAATGTAGGAGCTCTATCAAAAT CCAAGTAATCAAGCCAGTGAATGTAGGAGCTCTATCAAAAT < 41bp 0.793567015434172 0.593317112833782 0.11648396 0.17138481 prediction 0.400499805200779 Functional Loss - TPST1 ENSG00000169902 CDS Human protein_coding chr7:65751536 chr7:65751534 synonymous SNV . 0 19 hm1A_associated_SNPs_17374 0 0 1 2 65751513 65751534 mRNA hsa-miR-193a-3p TPST1 miRanda miRanda
2192 chr7 65751534 65751534 1 + C G CESC 65751536 + 65751516 65751556 41 CCAAGTAATCAAGCCAGTCAATGTAGGAGCTCTATCAAAAT CCAAGTAATCAAGCCAGTGAATGTAGGAGCTCTATCAAAAT < 41bp 0.793567015434172 0.593317112833782 0.11648396 0.17138481 prediction 0.400499805200779 Functional Loss - TPST1 ENSG00000169902 CDS Human protein_coding chr7:65751536 chr7:65751534 synonymous SNV . 0 19 hm1A_associated_SNPs_17374 0 0 1 2 65751513 65751534 mRNA hsa-miR-193b TPST1 miRanda miRanda
2192 chr11 3426096 3426096 1 + C T GBM 3426098 + 3426078 3426118 41 GTGAAGGCAAAGGGCCTCCGAGGGAGTATTACAGCCGCCTC GTGAAGGCAAAGGGCCTCTGAGGGAGTATTACAGCCGCCTC < 41bp 0.754030185225306 0.553828115214146 0.25197548 0.15859073 prediction 0.400404140022321 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3426098 chr11:3426096 . . 0 19 hm1A_associated_SNPs_17390 0 0 0 1 3426084 3426102 mRNA hsa-miR-125a-5p LOC650368 miRanda miRanda
2192 chr1 163044208 163044208 1 + T C UCEC 163044210 + 163044190 163044230 41 AGAAGAAGATTTTCAACCTGATGGAGAAGGATTCCTACCGC AGAAGAAGATTTTCAACCCGATGGAGAAGGATTCCTACCGC < 41bp 0.523759312495582 0.815123157121343 0.19510582 0.47818837 prediction 0.582727689251521 Functional Gain - RGS4 ENSG00000117152 CDS Human protein_coding chr1:163044210 chr1:163044208 nonsynonymous SNV 0.996 4 19 hm1A_associated_SNPs_17455 0 0 0 1 163044188 163044210 mRNA hsa-miR-125a-3p RGS4 miRanda miRanda
2192 chr7 66548473 66548473 1 + T C STAD 66548475 + 66548455 66548495 41 AGATGGACCAGCCTGAAATGATCTTGAAGGAAGCCATTGAA AGATGGACCAGCCTGAAACGATCTTGAAGGAAGCCATTGAA < 41bp 0.495542754169165 0.785757334877364 0.3819031 0.67776406 prediction 0.571514669754729 Functional Gain - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66548475 chr7:66548473 nonsynonymous SNV 1.000 0 19 hm1A_associated_SNPs_17471 0 0 0 2 66548470 66548492 mRNA hsa-miR-135a TYW1 miRanda miRanda
2192 chr7 66548473 66548473 1 + T C STAD 66548475 + 66548455 66548495 41 AGATGGACCAGCCTGAAATGATCTTGAAGGAAGCCATTGAA AGATGGACCAGCCTGAAACGATCTTGAAGGAAGCCATTGAA < 41bp 0.495542754169165 0.785757334877364 0.3819031 0.67776406 prediction 0.571514669754729 Functional Gain - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66548475 chr7:66548473 nonsynonymous SNV 1.000 0 19 hm1A_associated_SNPs_17471 0 0 0 2 66548468 66548492 mRNA hsa-miR-135b TYW1 miRanda miRanda
2192 chr1 36411405 36411405 1 + T C UCEC 36411407 + 36411387 36411427 41 AGTTGAAATCCCAAAGATTGATGTCTACCTCTATGAGGTAG AGTTGAAATCCCAAAGATCGATGTCTACCTCTATGAGGTAG < 41bp 0.509814552981588 0.792453978676269 0.037254333 0.17068774 prediction 0.565278851389362 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36411407 chr1:36411405 synonymous SNV . 0 19 hm1A_associated_SNPs_17484 0 0 1 15 36411399 36411418 mRNA hsa-let-7a EIF2C3 miRanda miRanda
2192 chr1 36411405 36411405 1 + T C UCEC 36411407 + 36411387 36411427 41 AGTTGAAATCCCAAAGATTGATGTCTACCTCTATGAGGTAG AGTTGAAATCCCAAAGATCGATGTCTACCTCTATGAGGTAG < 41bp 0.509814552981588 0.792453978676269 0.037254333 0.17068774 prediction 0.565278851389362 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36411407 chr1:36411405 synonymous SNV . 0 19 hm1A_associated_SNPs_17484 0 0 1 15 36411395 36411418 mRNA hsa-let-7b EIF2C3 miRanda miRanda
2192 chr1 36411405 36411405 1 + T C UCEC 36411407 + 36411387 36411427 41 AGTTGAAATCCCAAAGATTGATGTCTACCTCTATGAGGTAG AGTTGAAATCCCAAAGATCGATGTCTACCTCTATGAGGTAG < 41bp 0.509814552981588 0.792453978676269 0.037254333 0.17068774 prediction 0.565278851389362 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36411407 chr1:36411405 synonymous SNV . 0 19 hm1A_associated_SNPs_17484 0 0 1 15 36411395 36411418 mRNA hsa-let-7c EIF2C3 miRanda miRanda
2192 chr1 36411405 36411405 1 + T C UCEC 36411407 + 36411387 36411427 41 AGTTGAAATCCCAAAGATTGATGTCTACCTCTATGAGGTAG AGTTGAAATCCCAAAGATCGATGTCTACCTCTATGAGGTAG < 41bp 0.509814552981588 0.792453978676269 0.037254333 0.17068774 prediction 0.565278851389362 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36411407 chr1:36411405 synonymous SNV . 0 19 hm1A_associated_SNPs_17484 0 0 1 15 36411399 36411418 mRNA hsa-let-7d EIF2C3 miRanda miRanda
2192 chr1 36411405 36411405 1 + T C UCEC 36411407 + 36411387 36411427 41 AGTTGAAATCCCAAAGATTGATGTCTACCTCTATGAGGTAG AGTTGAAATCCCAAAGATCGATGTCTACCTCTATGAGGTAG < 41bp 0.509814552981588 0.792453978676269 0.037254333 0.17068774 prediction 0.565278851389362 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36411407 chr1:36411405 synonymous SNV . 0 19 hm1A_associated_SNPs_17484 0 0 1 15 36411397 36411418 mRNA hsa-let-7e EIF2C3 miRanda miRanda
2192 chr1 36411405 36411405 1 + T C UCEC 36411407 + 36411387 36411427 41 AGTTGAAATCCCAAAGATTGATGTCTACCTCTATGAGGTAG AGTTGAAATCCCAAAGATCGATGTCTACCTCTATGAGGTAG < 41bp 0.509814552981588 0.792453978676269 0.037254333 0.17068774 prediction 0.565278851389362 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36411407 chr1:36411405 synonymous SNV . 0 19 hm1A_associated_SNPs_17484 0 0 1 15 36411399 36411418 mRNA hsa-let-7f EIF2C3 miRanda miRanda
2192 chr1 36411405 36411405 1 + T C UCEC 36411407 + 36411387 36411427 41 AGTTGAAATCCCAAAGATTGATGTCTACCTCTATGAGGTAG AGTTGAAATCCCAAAGATCGATGTCTACCTCTATGAGGTAG < 41bp 0.509814552981588 0.792453978676269 0.037254333 0.17068774 prediction 0.565278851389362 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36411407 chr1:36411405 synonymous SNV . 0 19 hm1A_associated_SNPs_17484 0 0 1 15 36411397 36411418 mRNA hsa-miR-98 EIF2C3 miRanda miRanda
2192 chr1 36411405 36411405 1 + T C UCEC 36411407 + 36411387 36411427 41 AGTTGAAATCCCAAAGATTGATGTCTACCTCTATGAGGTAG AGTTGAAATCCCAAAGATCGATGTCTACCTCTATGAGGTAG < 41bp 0.509814552981588 0.792453978676269 0.037254333 0.17068774 prediction 0.565278851389362 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36411407 chr1:36411405 synonymous SNV . 0 19 hm1A_associated_SNPs_17484 0 0 1 15 36411396 36411417 mRNA hsa-miR-196a EIF2C3 miRanda miRanda
2192 chr1 36411405 36411405 1 + T C UCEC 36411407 + 36411387 36411427 41 AGTTGAAATCCCAAAGATTGATGTCTACCTCTATGAGGTAG AGTTGAAATCCCAAAGATCGATGTCTACCTCTATGAGGTAG < 41bp 0.509814552981588 0.792453978676269 0.037254333 0.17068774 prediction 0.565278851389362 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36411407 chr1:36411405 synonymous SNV . 0 19 hm1A_associated_SNPs_17484 0 0 1 15 36411397 36411418 mRNA hsa-let-7g EIF2C3 miRanda miRanda
2192 chr1 36411405 36411405 1 + T C UCEC 36411407 + 36411387 36411427 41 AGTTGAAATCCCAAAGATTGATGTCTACCTCTATGAGGTAG AGTTGAAATCCCAAAGATCGATGTCTACCTCTATGAGGTAG < 41bp 0.509814552981588 0.792453978676269 0.037254333 0.17068774 prediction 0.565278851389362 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36411407 chr1:36411405 synonymous SNV . 0 19 hm1A_associated_SNPs_17484 0 0 1 15 36411398 36411418 mRNA hsa-let-7i EIF2C3 miRanda miRanda
2192 chr1 36411405 36411405 1 + T C UCEC 36411407 + 36411387 36411427 41 AGTTGAAATCCCAAAGATTGATGTCTACCTCTATGAGGTAG AGTTGAAATCCCAAAGATCGATGTCTACCTCTATGAGGTAG < 41bp 0.509814552981588 0.792453978676269 0.037254333 0.17068774 prediction 0.565278851389362 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36411407 chr1:36411405 synonymous SNV . 0 19 hm1A_associated_SNPs_17484 0 0 1 15 36411401 36411423 mRNA hsa-miR-376a EIF2C3 miRanda miRanda
2192 chr1 36411405 36411405 1 + T C UCEC 36411407 + 36411387 36411427 41 AGTTGAAATCCCAAAGATTGATGTCTACCTCTATGAGGTAG AGTTGAAATCCCAAAGATCGATGTCTACCTCTATGAGGTAG < 41bp 0.509814552981588 0.792453978676269 0.037254333 0.17068774 prediction 0.565278851389362 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36411407 chr1:36411405 synonymous SNV . 0 19 hm1A_associated_SNPs_17484 0 0 1 15 36411397 36411416 mRNA hsa-miR-379 EIF2C3 miRanda miRanda
2192 chr1 36411405 36411405 1 + T C UCEC 36411407 + 36411387 36411427 41 AGTTGAAATCCCAAAGATTGATGTCTACCTCTATGAGGTAG AGTTGAAATCCCAAAGATCGATGTCTACCTCTATGAGGTAG < 41bp 0.509814552981588 0.792453978676269 0.037254333 0.17068774 prediction 0.565278851389362 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36411407 chr1:36411405 synonymous SNV . 0 19 hm1A_associated_SNPs_17484 0 0 1 15 36411396 36411417 mRNA hsa-miR-196b EIF2C3 miRanda miRanda
2192 chr1 36411405 36411405 1 + T C UCEC 36411407 + 36411387 36411427 41 AGTTGAAATCCCAAAGATTGATGTCTACCTCTATGAGGTAG AGTTGAAATCCCAAAGATCGATGTCTACCTCTATGAGGTAG < 41bp 0.509814552981588 0.792453978676269 0.037254333 0.17068774 prediction 0.565278851389362 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36411407 chr1:36411405 synonymous SNV . 0 19 hm1A_associated_SNPs_17484 0 0 1 15 36411400 36411423 mRNA hsa-miR-376b EIF2C3 miRanda miRanda
2192 chr1 36411405 36411405 1 + T C UCEC 36411407 + 36411387 36411427 41 AGTTGAAATCCCAAAGATTGATGTCTACCTCTATGAGGTAG AGTTGAAATCCCAAAGATCGATGTCTACCTCTATGAGGTAG < 41bp 0.509814552981588 0.792453978676269 0.037254333 0.17068774 prediction 0.565278851389362 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36411407 chr1:36411405 synonymous SNV . 0 19 hm1A_associated_SNPs_17484 0 0 1 15 36411399 36411418 mRNA hsa-miR-202 EIF2C3 miRanda miRanda
2192 chr9 1056580 1056580 1 + T C STAD 1056582 + 1056562 1056602 41 TGTCAGCGTGGCCACAACTTATAGACAGTATCCCTTGTCCT TGTCAGCGTGGCCACAACCTATAGACAGTATCCCTTGTCCT < 41bp 0.476491284958517 0.779430686121025 0.051017314 0.070174485 prediction 0.55886137224205 Functional Gain - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056582 chr9:1056580 synonymous SNV . 0 19 hm1A_associated_SNPs_17498 0 0 0 3 1056573 1056594 mRNA hsa-miR-190 DMRT2 miRanda miRanda
2192 chr9 1056580 1056580 1 + T C STAD 1056582 + 1056562 1056602 41 TGTCAGCGTGGCCACAACTTATAGACAGTATCCCTTGTCCT TGTCAGCGTGGCCACAACCTATAGACAGTATCCCTTGTCCT < 41bp 0.476491284958517 0.779430686121025 0.051017314 0.070174485 prediction 0.55886137224205 Functional Gain - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056582 chr9:1056580 synonymous SNV . 0 19 hm1A_associated_SNPs_17498 0 0 0 3 1056558 1056582 mRNA hsa-miR-382 DMRT2 miRanda miRanda
2192 chr9 1056580 1056580 1 + T C STAD 1056582 + 1056562 1056602 41 TGTCAGCGTGGCCACAACTTATAGACAGTATCCCTTGTCCT TGTCAGCGTGGCCACAACCTATAGACAGTATCCCTTGTCCT < 41bp 0.476491284958517 0.779430686121025 0.051017314 0.070174485 prediction 0.55886137224205 Functional Gain - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056582 chr9:1056580 synonymous SNV . 0 19 hm1A_associated_SNPs_17498 0 0 0 3 1056572 1056594 mRNA hsa-miR-190b DMRT2 miRanda miRanda
2192 chr14 93306119 93306119 1 + T C rs142297799 93306121 + 93306101 93306141 41 GACATTGATTATGGGTTATAATCAGGGAAACTAATTGTATT GACATTGATTATGGGTTACAATCAGGGAAACTAATTGTATT < 41bp 0.47245862544688 0.778452385383239 0.016864419 0.019578159 prediction 0.556904770766478 Functional Gain - GOLGA5 ENSG00000066455 UTR3 Human protein_coding chr14:93306121 chr14:93306119 . . 0 19 hm1A_associated_SNPs_17506 0 0 1 2 93306107 93306128 mRNA hsa-miR-125b GOLGA5 miRanda miRanda
2192 chr14 93306119 93306119 1 + T C rs142297799 93306121 + 93306101 93306141 41 GACATTGATTATGGGTTATAATCAGGGAAACTAATTGTATT GACATTGATTATGGGTTACAATCAGGGAAACTAATTGTATT < 41bp 0.47245862544688 0.778452385383239 0.016864419 0.019578159 prediction 0.556904770766478 Functional Gain - GOLGA5 ENSG00000066455 UTR3 Human protein_coding chr14:93306121 chr14:93306119 . . 0 19 hm1A_associated_SNPs_17506 0 0 1 2 93306102 93306128 mRNA hsa-miR-125a-5p GOLGA5 miRanda miRanda
2192 chr5 172461893 172461893 1 + A C rs60728179 172461895 + 172461875 172461915 41 TTTTCCTCCTTTCTATGGAAATCTGGGCTCGGTGTTTGTAA TTTTCCTCCTTTCTATGGCAATCTGGGCTCGGTGTTTGTAA < 41bp 0.532718355189596 0.807424355052108 0.089176446 0.09032914 prediction 0.549411999725024 Functional Gain - ATP6V0E1 ENSG00000113732 UTR3 Human protein_coding chr5:172461895 chr5:172461893 . . 0 19 hm1A_associated_SNPs_17529 0 0 1 3 172461873 172461893 mRNA hsa-miR-376c ATP6V0E1 miRanda miRanda
2192 chr5 172461893 172461893 1 + A C rs60728179 172461895 + 172461875 172461915 41 TTTTCCTCCTTTCTATGGAAATCTGGGCTCGGTGTTTGTAA TTTTCCTCCTTTCTATGGCAATCTGGGCTCGGTGTTTGTAA < 41bp 0.532718355189596 0.807424355052108 0.089176446 0.09032914 prediction 0.549411999725024 Functional Gain - ATP6V0E1 ENSG00000113732 UTR3 Human protein_coding chr5:172461895 chr5:172461893 . . 0 19 hm1A_associated_SNPs_17529 0 0 1 3 172461868 172461893 mRNA hsa-miR-376a ATP6V0E1 miRanda miRanda
2192 chr5 172461893 172461893 1 + A C rs60728179 172461895 + 172461875 172461915 41 TTTTCCTCCTTTCTATGGAAATCTGGGCTCGGTGTTTGTAA TTTTCCTCCTTTCTATGGCAATCTGGGCTCGGTGTTTGTAA < 41bp 0.532718355189596 0.807424355052108 0.089176446 0.09032914 prediction 0.549411999725024 Functional Gain - ATP6V0E1 ENSG00000113732 UTR3 Human protein_coding chr5:172461895 chr5:172461893 . . 0 19 hm1A_associated_SNPs_17529 0 0 1 3 172461867 172461893 mRNA hsa-miR-376b ATP6V0E1 miRanda miRanda
2192 chr18 43422098 43422098 1 + A C UCEC 43422100 + 43422080 43422120 41 CCAGGAGTCCAATTATGAAAATTTGAGCCAGATGAACCCCC CCAGGAGTCCAATTATGACAATTTGAGCCAGATGAACCCCC < 41bp 0.50828087503454 0.78219816812828 0.28266957 0.3939456 prediction 0.547834586187481 Functional Gain - SIGLEC15 ENSG00000197046 CDS Human protein_coding chr18:43422100 chr18:43422098 nonsynonymous SNV 0.995 4 19 hm1A_associated_SNPs_17533 0 0 0 1 43422090 43422111 mRNA hsa-miR-149 SIGLEC15 miRanda miRanda
2192 chr14 65390788 65390788 1 + T C HNSC 65390790 + 65390770 65390810 41 GTAAGCGGGATTTTATGCTGATCACAAACAAATCCTTGAAA GTAAGCGGGATTTTATGCCGATCACAAACAAATCCTTGAAA < 41bp 0.54202582242501 0.815001421083264 0.15963256 0.5780386 prediction 0.545951197316508 Functional Gain - CHURC1;CHURC1-FNTB ENSG00000125954;ENSG00000257365;ENSG00000258289 CDS Human other chr14:65390790 chr14:65390788 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_17539 0 0 1 4 65390772 65390793 mRNA hsa-miR-383 LOC100289314 miRanda miRanda
2192 chr14 65390788 65390788 1 + T C HNSC 65390790 + 65390770 65390810 41 GTAAGCGGGATTTTATGCTGATCACAAACAAATCCTTGAAA GTAAGCGGGATTTTATGCCGATCACAAACAAATCCTTGAAA < 41bp 0.54202582242501 0.815001421083264 0.15963256 0.5780386 prediction 0.545951197316508 Functional Gain - CHURC1;CHURC1-FNTB ENSG00000125954;ENSG00000257365;ENSG00000258289 CDS Human other chr14:65390790 chr14:65390788 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_17539 0 0 1 4 65390777 65390797 mRNA hsa-miR-599 LOC100289314 miRanda miRanda
2192 chr14 65390788 65390788 1 + T C HNSC 65390790 + 65390770 65390810 41 GTAAGCGGGATTTTATGCTGATCACAAACAAATCCTTGAAA GTAAGCGGGATTTTATGCCGATCACAAACAAATCCTTGAAA < 41bp 0.54202582242501 0.815001421083264 0.15963256 0.5780386 prediction 0.545951197316508 Functional Gain - CHURC1;CHURC1-FNTB ENSG00000125954;ENSG00000257365;ENSG00000258289 CDS Human other chr14:65390790 chr14:65390788 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_17539 0 0 1 4 65390776 65390797 mRNA hsa-miR-758 LOC100289314 miRanda miRanda
2192 chr14 65390788 65390788 1 + T C HNSC 65390790 + 65390770 65390810 41 GTAAGCGGGATTTTATGCTGATCACAAACAAATCCTTGAAA GTAAGCGGGATTTTATGCCGATCACAAACAAATCCTTGAAA < 41bp 0.54202582242501 0.815001421083264 0.15963256 0.5780386 prediction 0.545951197316508 Functional Gain - CHURC1;CHURC1-FNTB ENSG00000125954;ENSG00000257365;ENSG00000258289 CDS Human other chr14:65390790 chr14:65390788 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_17539 0 0 1 4 65390785 65390805 mRNA hsa-miR-876-5p LOC100289314 miRanda miRanda
2192 chr7 54636842 54636842 1 + T C BRCA 54636844 + 54636824 54636864 41 CAAAGAGCAAATCGCCTGTAAAATCTACGGAGCGGACAGCA CAAAGAGCAAATCGCCTGCAAAATCTACGGAGCGGACAGCA < 41bp 0.529427667012006 0.801898224454051 0.40017915 0.41272062 prediction 0.54494111488409 Functional Gain - VSTM2A ENSG00000170419 CDS Human protein_coding chr7:54636844 chr7:54636842 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_17545 0 0 0 1 54636819 54636842 mRNA hsa-miR-125a-3p VSTM2A miRanda miRanda
2192 chr7 151716844 151716844 1 + T C rs139649361 151716846 + 151716826 151716866 41 ATTTCAGTGGTATTTGGATAATGTCTTCCCAGAGTTGGAGG ATTTCAGTGGTATTTGGACAATGTCTTCCCAGAGTTGGAGG < 41bp 0.546280003195871 0.816342428082341 0.10469431 0.13951051 prediction 0.540124849772939 Functional Gain - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151716846 chr7:151716844 synonymous SNV . 0 19 hm1A_associated_SNPs_17571 0 0 0 3 151716835 151716855 mRNA hsa-miR-7 GALNTL5 miRanda miRanda
2192 chr7 151716844 151716844 1 + T C rs139649361 151716846 + 151716826 151716866 41 ATTTCAGTGGTATTTGGATAATGTCTTCCCAGAGTTGGAGG ATTTCAGTGGTATTTGGACAATGTCTTCCCAGAGTTGGAGG < 41bp 0.546280003195871 0.816342428082341 0.10469431 0.13951051 prediction 0.540124849772939 Functional Gain - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151716846 chr7:151716844 synonymous SNV . 0 19 hm1A_associated_SNPs_17571 0 0 0 3 151716839 151716860 mRNA hsa-miR-330-5p GALNTL5 miRanda miRanda
2192 chr7 151716844 151716844 1 + T C rs139649361 151716846 + 151716826 151716866 41 ATTTCAGTGGTATTTGGATAATGTCTTCCCAGAGTTGGAGG ATTTCAGTGGTATTTGGACAATGTCTTCCCAGAGTTGGAGG < 41bp 0.546280003195871 0.816342428082341 0.10469431 0.13951051 prediction 0.540124849772939 Functional Gain - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151716846 chr7:151716844 synonymous SNV . 0 19 hm1A_associated_SNPs_17571 0 0 0 3 151716841 151716860 mRNA hsa-miR-326 GALNTL5 miRanda miRanda
2192 chr1 150936860 150936860 1 + C T SKCM 150936859 + 150936839 150936879 41 AGAGGACAGCCTTCTTCCCAACCCTTCTTGAACTGTCGTTT AGAGGACAGCCTTCTTCCCAATCCTTCTTGAACTGTCGTTT < 41bp 0.508391019468514 0.77684275353276 0.06603697 0.06338373 prediction 0.536903468128491 Functional Gain - SETDB1 ENSG00000143418 CDS Human protein_coding chr1:150936859 chr1:150936860 nonsynonymous SNV 0.002 0 22 hm1A_associated_SNPs_17591 0 0 1 1 150936842 150936864 mRNA hsa-miR-296-3p SETDB1 miRanda miRanda
2192 chr9 32425898 32425898 1 + T C rs34319839 32425900 + 32425880 32425920 41 CCATAAGACCTTTATCTATGATAACACTGAATTCACCCTTG CCATAAGACCTTTATCTACGATAACACTGAATTCACCCTTG < 41bp 0.490126098857561 0.76808243072564 0.07362282 0.16378549 prediction 0.53616486145128 Functional Gain - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32425900 chr9:32425898 synonymous SNV . 0 19 hm1A_associated_SNPs_17598 0 0 0 2 32425881 32425901 mRNA hsa-miR-376a ACO1 miRanda miRanda
2192 chr9 32425898 32425898 1 + T C rs34319839 32425900 + 32425880 32425920 41 CCATAAGACCTTTATCTATGATAACACTGAATTCACCCTTG CCATAAGACCTTTATCTACGATAACACTGAATTCACCCTTG < 41bp 0.490126098857561 0.76808243072564 0.07362282 0.16378549 prediction 0.53616486145128 Functional Gain - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32425900 chr9:32425898 synonymous SNV . 0 19 hm1A_associated_SNPs_17598 0 0 0 2 32425879 32425901 mRNA hsa-miR-376b ACO1 miRanda miRanda
2192 chr5 70927998 70927998 1 + T C HNSC 70928000 + 70927980 70928020 41 TGAGGATCTTGGAGGTGCTGATCTTCATTGCAGGTGAAACA TGAGGATCTTGGAGGTGCCGATCTTCATTGCAGGTGAAACA < 41bp 0.477520069808628 0.76628150942669 0.12859362 0.43835196 prediction 0.532563018853379 Functional Gain - MCCC2 ENSG00000131844 CDS Human protein_coding chr5:70928000 chr5:70927998 synonymous SNV . 0 19 hm1A_associated_SNPs_17621 0 0 1 1 70927990 70928012 mRNA hsa-miR-544 MCCC2 miRanda miRanda
2192 chr2 71662097 71662097 1 + T C rs561348057 71662099 + 71662079 71662119 41 AGACTGATGGGGAAAGTATGATGGGTTTGATTTTTATATCA AGACTGATGGGGAAAGTACGATGGGTTTGATTTTTATATCA < 41bp 0.560005839783751 0.825834212870849 0.10223749 0.23093113 prediction 0.531656746174197 Functional Gain - ZNF638 ENSG00000075292 UTR3 Human protein_coding chr2:71662099 chr2:71662097 . . 0 19 hm1A_associated_SNPs_17628 0 0 0 1 71662091 71662110 mRNA hsa-miR-371-5p ZNF638 miRanda miRanda
2192 chr4 39482627 39482627 1 + T C rs2276893 39482629 + 39482609 39482649 41 GGCCATTCATTTTAATCGTGATGGATTCTTGATAGTTTCAA GGCCATTCATTTTAATCGCGATGGATTCTTGATAGTTTCAA < 41bp 0.517488751765167 0.780222707858921 0.13327152 0.18438146 prediction 0.525467912187508 Functional Gain - LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482629 chr4:39482627 . . 0 19 hm1A_associated_SNPs_17675 0 0 0 1 39482620 39482643 mRNA hsa-miR-361-5p LOC401127 miRanda miRanda
2192 chrX 119513629 119513629 1 + A C rs2227305 119513631 + 119513611 119513651 41 CATCTTTCCTTGCCTATGACATGTGTATAAAATGACATTGT CATCTTTCCTTGCCTATGCCATGTGTATAAAATGACATTGT < 41bp 0.454114937831795 0.759879439897413 0.09409863 0.8416119 prediction 0.519758879794825 Functional Gain - ATP1B4 ENSG00000101892 UTR3 Human protein_coding chrX:119513631 chrX:119513629 . . 0 19 hm1A_associated_SNPs_17724 0 0 0 1 119513608 119513632 mRNA hsa-miR-153 ATP1B4 miRanda miRanda
2192 chr7 65228339 65228339 1 + T C KICH 65228341 + 65228321 65228361 41 TTCTCTGAAAGGTTGAATTGAAGCTTCCTCTGTATCTGAGT TTCTCTGAAAGGTTGAATCGAAGCTTCCTCTGTATCTGAGT < 41bp 0.492824469464778 0.759553777796166 0.17306796 0.28434733 prediction 0.519107555592331 Functional Gain - CCT6P1 ENSG00000228409 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:65228341 chr7:65228339 . . 0 19 hm1A_associated_SNPs_17733 0 0 0 1 65228337 65228356 mRNA hsa-miR-381 CCT6P1 miRanda miRanda
2192 chrX 35969413 35969413 1 + T C DLBC 35969415 + 35969395 35969435 41 ACATGCACGTGTATACAATAATAGCCCAGAGCCCATAAATT ACATGCACGTGTATACAACAATAGCCCAGAGCCCATAAATT < 41bp 0.534930177343294 0.79364012443155 0.05110523 0.05709809 prediction 0.517419894176511 Functional Gain - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35969415 chrX:35969413 synonymous SNV . 0 19 hm1A_associated_SNPs_17745 0 0 0 2 35969405 35969426 mRNA hsa-miR-330-5p CXorf22 miRanda miRanda
2192 chrX 35969413 35969413 1 + T C DLBC 35969415 + 35969395 35969435 41 ACATGCACGTGTATACAATAATAGCCCAGAGCCCATAAATT ACATGCACGTGTATACAACAATAGCCCAGAGCCCATAAATT < 41bp 0.534930177343294 0.79364012443155 0.05110523 0.05709809 prediction 0.517419894176511 Functional Gain - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35969415 chrX:35969413 synonymous SNV . 0 19 hm1A_associated_SNPs_17745 0 0 0 2 35969407 35969426 mRNA hsa-miR-326 CXorf22 miRanda miRanda
2192 chr10 74631259 74631259 1 + A C UCEC 74631261 + 74631241 74631281 41 GGTGGGAATATTCCTGGGACATCATGGAGCCAGTAACATAC GGTGGGAATATTCCTGGGCCATCATGGAGCCAGTAACATAC < 41bp 0.511956439441446 0.770288687454159 0.11527449 0.78918827 prediction 0.516664496025425 Functional Gain - MCU ENSG00000156026 CDS Human protein_coding chr10:74631261 chr10:74631259 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_17751 0 0 1 3 74631251 74631274 mRNA hsa-miR-149 CCDC109A miRanda miRanda
2192 chr10 74631259 74631259 1 + A C UCEC 74631261 + 74631241 74631281 41 GGTGGGAATATTCCTGGGACATCATGGAGCCAGTAACATAC GGTGGGAATATTCCTGGGCCATCATGGAGCCAGTAACATAC < 41bp 0.511956439441446 0.770288687454159 0.11527449 0.78918827 prediction 0.516664496025425 Functional Gain - MCU ENSG00000156026 CDS Human protein_coding chr10:74631261 chr10:74631259 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_17751 0 0 1 3 74631253 74631275 mRNA hsa-miR-193a-3p CCDC109A miRanda miRanda
2192 chr10 74631259 74631259 1 + A C UCEC 74631261 + 74631241 74631281 41 GGTGGGAATATTCCTGGGACATCATGGAGCCAGTAACATAC GGTGGGAATATTCCTGGGCCATCATGGAGCCAGTAACATAC < 41bp 0.511956439441446 0.770288687454159 0.11527449 0.78918827 prediction 0.516664496025425 Functional Gain - MCU ENSG00000156026 CDS Human protein_coding chr10:74631261 chr10:74631259 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_17751 0 0 1 3 74631253 74631275 mRNA hsa-miR-193b CCDC109A miRanda miRanda
2192 chr16 3459042 3459042 1 + T C rs371213525 3459044 + 3459024 3459064 41 GAGGCCCTTGAGGAATGATGATGCACATTCTGCTGTGAGGA GAGGCCCTTGAGGAATGACGATGCACATTCTGCTGTGAGGA < 41bp 0.468823492709966 0.757840531245495 0.36749983 0.58810407 prediction 0.515681062490991 Functional Gain - ZNF174 ENSG00000103343 UTR3 Human protein_coding chr16:3459044 chr16:3459042 . . 0 19 hm1A_associated_SNPs_17765 0 0 1 1 3459023 3459045 mRNA hsa-miR-23a ZNF174 miRanda miRanda
2192 chr18 21739761 21739761 1 + A C COAD 21739763 + 21739743 21739783 41 ACAGTCAGATGTCTTGAGATATGTTGCAATGCAAGTGCCCA ACAGTCAGATGTCTTGAGCTATGTTGCAATGCAAGTGCCCA < 41bp 0.498015403317366 0.75634981871856 0.09376454 0.10542306 prediction 0.512699637437121 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739763 chr18:21739761 nonsynonymous SNV 0.996 3 19 hm1A_associated_SNPs_17797 0 0 1 5 21739751 21739773 mRNA hsa-miR-25 CABYR miRanda miRanda
2192 chr18 21739761 21739761 1 + A C COAD 21739763 + 21739743 21739783 41 ACAGTCAGATGTCTTGAGATATGTTGCAATGCAAGTGCCCA ACAGTCAGATGTCTTGAGCTATGTTGCAATGCAAGTGCCCA < 41bp 0.498015403317366 0.75634981871856 0.09376454 0.10542306 prediction 0.512699637437121 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739763 chr18:21739761 nonsynonymous SNV 0.996 3 19 hm1A_associated_SNPs_17797 0 0 1 5 21739750 21739773 mRNA hsa-miR-32 CABYR miRanda miRanda
2192 chr18 21739761 21739761 1 + A C COAD 21739763 + 21739743 21739783 41 ACAGTCAGATGTCTTGAGATATGTTGCAATGCAAGTGCCCA ACAGTCAGATGTCTTGAGCTATGTTGCAATGCAAGTGCCCA < 41bp 0.498015403317366 0.75634981871856 0.09376454 0.10542306 prediction 0.512699637437121 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739763 chr18:21739761 nonsynonymous SNV 0.996 3 19 hm1A_associated_SNPs_17797 0 0 1 5 21739756 21739776 mRNA hsa-miR-33a CABYR miRanda miRanda
2192 chr18 21739761 21739761 1 + A C COAD 21739763 + 21739743 21739783 41 ACAGTCAGATGTCTTGAGATATGTTGCAATGCAAGTGCCCA ACAGTCAGATGTCTTGAGCTATGTTGCAATGCAAGTGCCCA < 41bp 0.498015403317366 0.75634981871856 0.09376454 0.10542306 prediction 0.512699637437121 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739763 chr18:21739761 nonsynonymous SNV 0.996 3 19 hm1A_associated_SNPs_17797 0 0 1 5 21739751 21739773 mRNA hsa-miR-92a CABYR miRanda miRanda
2192 chr18 21739761 21739761 1 + A C COAD 21739763 + 21739743 21739783 41 ACAGTCAGATGTCTTGAGATATGTTGCAATGCAAGTGCCCA ACAGTCAGATGTCTTGAGCTATGTTGCAATGCAAGTGCCCA < 41bp 0.498015403317366 0.75634981871856 0.09376454 0.10542306 prediction 0.512699637437121 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739763 chr18:21739761 nonsynonymous SNV 0.996 3 19 hm1A_associated_SNPs_17797 0 0 1 5 21739757 21739776 mRNA hsa-miR-33b CABYR miRanda miRanda
2192 chr12 54383936 54383936 1 + A C rs554252317 54383938 + 54383918 54383958 41 CAGAATGCCCCCCCCCCCAAATATTGTCCTGTCCCTGTCTG CAGAATGCCCCCCCCCCCCAATATTGTCCTGTCCCTGTCTG < 41bp 0.469788888934689 0.756332265077359 0.07379797 0.09958276 prediction 0.512664530154719 Functional Gain - HOXC10 ENSG00000180818 UTR3 Human protein_coding chr12:54383938 chr12:54383936 . . 0 19 hm1A_associated_SNPs_17798 0 0 1 1 54383936 54383959 mRNA hsa-miR-214 HOXC10 miRanda miRanda
2192 chr19 50387731 50387731 1 + T C COAD 50387733 + 50387713 50387753 41 CAGGCTACGTCCAGGGCATGAGTGATCTTCTCTCCCCGATC CAGGCTACGTCCAGGGCACGAGTGATCTTCTCTCCCCGATC < 41bp 0.53126217936928 0.787018128610691 0.20424268 0.2267456 prediction 0.511511898482822 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50387733 chr19:50387731 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_17812 0 0 1 3 50387728 50387748 mRNA hsa-miR-185 TBC1D17 miRanda miRanda
2192 chr19 50387731 50387731 1 + T C COAD 50387733 + 50387713 50387753 41 CAGGCTACGTCCAGGGCATGAGTGATCTTCTCTCCCCGATC CAGGCTACGTCCAGGGCACGAGTGATCTTCTCTCCCCGATC < 41bp 0.53126217936928 0.787018128610691 0.20424268 0.2267456 prediction 0.511511898482822 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50387733 chr19:50387731 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_17812 0 0 1 3 50387723 50387745 mRNA hsa-miR-539 TBC1D17 miRanda miRanda
2192 chr19 50387731 50387731 1 + T C COAD 50387733 + 50387713 50387753 41 CAGGCTACGTCCAGGGCATGAGTGATCTTCTCTCCCCGATC CAGGCTACGTCCAGGGCACGAGTGATCTTCTCTCCCCGATC < 41bp 0.53126217936928 0.787018128610691 0.20424268 0.2267456 prediction 0.511511898482822 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50387733 chr19:50387731 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_17812 0 0 1 3 50387716 50387731 mRNA hsa-miR-874 TBC1D17 miRanda miRanda
2192 chr8 70515435 70515435 1 + A C UCS 70515437 + 70515417 70515457 41 CCCTTTACAGAGTCCCACAGATCGTTCTCAACATTGACTTG CCCTTTACAGAGTCCCACCGATCGTTCTCAACATTGACTTG < 41bp 0.529221169606972 0.783267450403037 0.13734293 0.3448872 prediction 0.508092561592132 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70515437 chr8:70515435 nonsynonymous SNV 0.997 3 19 hm1A_associated_SNPs_17848 0 0 0 1 70515429 70515450 mRNA hsa-miR-653 SULF1 miRanda miRanda
2192 chr10 74666402 74666402 1 + T C GBM 74666404 + 74666384 74666424 41 GCTGCAGTGAGATCTGTGTGAACCTCAAAAACTCCTACCGC GCTGCAGTGAGATCTGTGCGAACCTCAAAAACTCCTACCGC < 41bp 0.541401144045297 0.795006519079962 0.14891124 0.3180879 prediction 0.507210750069331 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74666404 chr10:74666402 nonsynonymous SNV 0.997 1 19 hm1A_associated_SNPs_17869 0 0 0 2 74666384 74666405 mRNA hsa-miR-377 OIT3 miRanda miRanda
2192 chr10 74666402 74666402 1 + T C GBM 74666404 + 74666384 74666424 41 GCTGCAGTGAGATCTGTGTGAACCTCAAAAACTCCTACCGC GCTGCAGTGAGATCTGTGCGAACCTCAAAAACTCCTACCGC < 41bp 0.541401144045297 0.795006519079962 0.14891124 0.3180879 prediction 0.507210750069331 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74666404 chr10:74666402 nonsynonymous SNV 0.997 1 19 hm1A_associated_SNPs_17869 0 0 0 2 74666382 74666405 mRNA hsa-miR-421 OIT3 miRanda miRanda
2192 chr15 75190002 75190002 1 + T C PAAD 75190004 + 75189984 75190024 41 GCTCTTCATTGGGGCCAATGAGAGTGTCTCACTGAAGCTTA GCTCTTCATTGGGGCCAACGAGAGTGTCTCACTGAAGCTTA < 41bp 0.460648006829417 0.753234759570562 0.1864653 0.25946832 prediction 0.506469519141124 Functional Gain - MPI ENSG00000178802 CDS Human protein_coding chr15:75190004 chr15:75190002 synonymous SNV . 0 19 hm1A_associated_SNPs_17879 0 0 1 1 75189985 75190008 mRNA hsa-miR-136 MPI miRanda miRanda
2192 chr2 190670407 190670407 1 + T C rs2066457 190670409 + 190670389 190670429 41 AACAAGAACGGCTGCTGATAATTTTAGCACCCAGTATGTTT AACAAGAACGGCTGCTGACAATTTTAGCACCCAGTATGTTT < 41bp 0.530241545362292 0.782863435596014 0.11771038 0.12913516 prediction 0.505243780467443 Functional Gain - PMS1 ENSG00000064933 CDS Human protein_coding chr2:190670409 chr2:190670407 synonymous SNV . 0 19 hm1A_associated_SNPs_17906 1 0 1 1 190670388 190670409 mRNA hsa-miR-361-5p PMS1 miRanda miRanda
2192 chr16 50251523 50251523 1 + T C UCEC 50251525 + 50251505 50251545 41 GAAAGTTGATATCAGCTTTAATGTACAGAATGGCGTGAGAG GAAAGTTGATATCAGCTTCAATGTACAGAATGGCGTGAGAG < 41bp 0.460357599986316 0.752008948101202 0.08370224 0.106832236 prediction 0.504017896202404 Functional Gain - PAPD5 ENSG00000121274 CDS Human protein_coding chr16:50251525 chr16:50251523 synonymous SNV . 0 19 hm1A_associated_SNPs_17921 0 0 0 4 50251502 50251524 mRNA hsa-miR-320a PAPD5 miRanda miRanda
2192 chr16 50251523 50251523 1 + T C UCEC 50251525 + 50251505 50251545 41 GAAAGTTGATATCAGCTTTAATGTACAGAATGGCGTGAGAG GAAAGTTGATATCAGCTTCAATGTACAGAATGGCGTGAGAG < 41bp 0.460357599986316 0.752008948101202 0.08370224 0.106832236 prediction 0.504017896202404 Functional Gain - PAPD5 ENSG00000121274 CDS Human protein_coding chr16:50251525 chr16:50251523 synonymous SNV . 0 19 hm1A_associated_SNPs_17921 0 0 0 4 50251502 50251524 mRNA hsa-miR-320b PAPD5 miRanda miRanda
2192 chr16 50251523 50251523 1 + T C UCEC 50251525 + 50251505 50251545 41 GAAAGTTGATATCAGCTTTAATGTACAGAATGGCGTGAGAG GAAAGTTGATATCAGCTTCAATGTACAGAATGGCGTGAGAG < 41bp 0.460357599986316 0.752008948101202 0.08370224 0.106832236 prediction 0.504017896202404 Functional Gain - PAPD5 ENSG00000121274 CDS Human protein_coding chr16:50251525 chr16:50251523 synonymous SNV . 0 19 hm1A_associated_SNPs_17921 0 0 0 4 50251504 50251524 mRNA hsa-miR-320c PAPD5 miRanda miRanda
2192 chr16 50251523 50251523 1 + T C UCEC 50251525 + 50251505 50251545 41 GAAAGTTGATATCAGCTTTAATGTACAGAATGGCGTGAGAG GAAAGTTGATATCAGCTTCAATGTACAGAATGGCGTGAGAG < 41bp 0.460357599986316 0.752008948101202 0.08370224 0.106832236 prediction 0.504017896202404 Functional Gain - PAPD5 ENSG00000121274 CDS Human protein_coding chr16:50251525 chr16:50251523 synonymous SNV . 0 19 hm1A_associated_SNPs_17921 0 0 0 4 50251505 50251524 mRNA hsa-miR-320d PAPD5 miRanda miRanda
2192 chr1 76255665 76255665 1 + T C COAD 76255667 + 76255647 76255687 41 TGTATGACAGTATTAATGTTATTGACGTAAATAAAGTTGTG TGTATGACAGTATTAATGCTATTGACGTAAATAAAGTTGTG < 41bp 0.562646627051399 0.814594094821735 0.05236852 0.053499818 prediction 0.503894935540671 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255667 chr1:76255665 nonsynonymous SNV 0.993 0 19 hm1A_associated_SNPs_17925 0 0 1 1 76255646 76255667 mRNA hsa-miR-543 RABGGTB miRanda miRanda
2192 chr14 90450938 90450938 1 + T C UCEC 90450940 + 90450920 90450960 41 GCCAACACATTTTAAAGCTGATCTCATCAGTTACTTGATGG GCCAACACATTTTAAAGCCGATCTCATCAGTTACTTGATGG < 41bp 0.557233811217892 0.809075103103378 0.13404542 0.3481286 prediction 0.503682583770972 Functional Gain - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90450940 chr14:90450938 synonymous SNV . 0 19 hm1A_associated_SNPs_17930 0 0 0 2 90450937 90450958 mRNA hsa-miR-26a TDP1 miRanda miRanda
2192 chr14 90450938 90450938 1 + T C UCEC 90450940 + 90450920 90450960 41 GCCAACACATTTTAAAGCTGATCTCATCAGTTACTTGATGG GCCAACACATTTTAAAGCCGATCTCATCAGTTACTTGATGG < 41bp 0.557233811217892 0.809075103103378 0.13404542 0.3481286 prediction 0.503682583770972 Functional Gain - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90450940 chr14:90450938 synonymous SNV . 0 19 hm1A_associated_SNPs_17930 0 0 0 2 90450938 90450958 mRNA hsa-miR-26b TDP1 miRanda miRanda
2192 chr6 36106756 36106756 1 + T C LUAD 36106758 + 36106738 36106778 41 TGAACCCTTCCGGGACCCTGAGGAAGAGACGGAGGCCCAGC TGAACCCTTCCGGGACCCCGAGGAAGAGACGGAGGCCCAGC < 41bp 0.497425221936175 0.751425179757344 0.47377342 0.7691903 prediction 0.502850359514688 Functional Gain - MAPK13 ENSG00000156711 CDS Human protein_coding chr6:36106758 chr6:36106756 synonymous SNV . 0 19 hm1A_associated_SNPs_17941 0 0 1 1 36106755 36106778 mRNA hsa-miR-149 MAPK13 miRanda miRanda
2192 chr3 9739457 9739457 1 + T C UCEC 9739459 + 9739439 9739479 41 ATGGCAGCTGGCAGATGGTAACGGGCTGTGGCAGTATTCAG ATGGCAGCTGGCAGATGGCAACGGGCTGTGGCAGTATTCAG < 41bp 0.520050604629866 0.77045954715187 0.2287944 0.21356463 prediction 0.500817885044008 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9739459 chr3:9739457 nonsynonymous SNV 0.776 2 19 hm1A_associated_SNPs_17975 0 0 1 3 9739456 9739477 mRNA hsa-miR-200b MTMR14 miRanda miRanda
2192 chr3 9739457 9739457 1 + T C UCEC 9739459 + 9739439 9739479 41 ATGGCAGCTGGCAGATGGTAACGGGCTGTGGCAGTATTCAG ATGGCAGCTGGCAGATGGCAACGGGCTGTGGCAGTATTCAG < 41bp 0.520050604629866 0.77045954715187 0.2287944 0.21356463 prediction 0.500817885044008 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9739459 chr3:9739457 nonsynonymous SNV 0.776 2 19 hm1A_associated_SNPs_17975 0 0 1 3 9739455 9739477 mRNA hsa-miR-200c MTMR14 miRanda miRanda
2192 chr3 9739457 9739457 1 + T C UCEC 9739459 + 9739439 9739479 41 ATGGCAGCTGGCAGATGGTAACGGGCTGTGGCAGTATTCAG ATGGCAGCTGGCAGATGGCAACGGGCTGTGGCAGTATTCAG < 41bp 0.520050604629866 0.77045954715187 0.2287944 0.21356463 prediction 0.500817885044008 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9739459 chr3:9739457 nonsynonymous SNV 0.776 2 19 hm1A_associated_SNPs_17975 0 0 1 3 9739456 9739477 mRNA hsa-miR-429 MTMR14 miRanda miRanda
2192 chr1 235590506 235590506 1 + T C DLBC 235590508 + 235590488 235590528 41 TGTCATCATGGGATGAAGTGATACACATTGCTGATCAGCTC TGTCATCATGGGATGAAGCGATACACATTGCTGATCAGCTC < 41bp 0.454318418636816 0.749310107359329 0.07479572 0.17714229 prediction 0.498620214718657 Functional Gain - TBCE ENSG00000116957 CDS Human protein_coding chr1:235590508 chr1:235590506 nonsynonymous SNV 0.697 4 19 hm1A_associated_SNPs_18022 0 0 1 1 235590501 235590524 mRNA hsa-miR-383 TBCE miRanda miRanda
2192 chr20 3893176 3893176 1 + A C UCEC 3893178 + 3893158 3893198 41 CTTTTGAAGAAGCTCTTGAAATGGCATCTCGTGGAGATAGC CTTTTGAAGAAGCTCTTGCAATGGCATCTCGTGGAGATAGC < 41bp 0.55948627821412 0.808403875064099 0.07424295 0.07324284 prediction 0.497835193699956 Functional Gain - PANK2 ENSG00000125779 CDS Human protein_coding chr20:3893178 chr20:3893176 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_18033 0 0 1 1 3893154 3893176 mRNA hsa-miR-335 PANK2 miRanda miRanda
2192 chrX 125955635 125955635 1 + C T rs775371525 125955634 + 125955614 125955654 41 GTTTAGCACTAATGTGCCCTACTTGAAACCACGTACCCTCC GTTTAGCACTAATGTGCCCTATTTGAAACCACGTACCCTCC < 41bp 0.552911587759085 0.801578899741646 0.110075295 0.1383158 prediction 0.497334623965121 Functional Gain - PRR32 ENSG00000183631 UTR3 Human protein_coding chrX:125955634 chrX:125955635 . . 0 22 hm1A_associated_SNPs_18038 0 0 0 3 125955619 125955640 mRNA hsa-miR-26a CXorf64 miRanda miRanda
2192 chrX 125955635 125955635 1 + C T rs775371525 125955634 + 125955614 125955654 41 GTTTAGCACTAATGTGCCCTACTTGAAACCACGTACCCTCC GTTTAGCACTAATGTGCCCTATTTGAAACCACGTACCCTCC < 41bp 0.552911587759085 0.801578899741646 0.110075295 0.1383158 prediction 0.497334623965121 Functional Gain - PRR32 ENSG00000183631 UTR3 Human protein_coding chrX:125955634 chrX:125955635 . . 0 22 hm1A_associated_SNPs_18038 0 0 0 3 125955620 125955640 mRNA hsa-miR-26b CXorf64 miRanda miRanda
2192 chrX 125955635 125955635 1 + C T rs775371525 125955634 + 125955614 125955654 41 GTTTAGCACTAATGTGCCCTACTTGAAACCACGTACCCTCC GTTTAGCACTAATGTGCCCTATTTGAAACCACGTACCCTCC < 41bp 0.552911587759085 0.801578899741646 0.110075295 0.1383158 prediction 0.497334623965121 Functional Gain - PRR32 ENSG00000183631 UTR3 Human protein_coding chrX:125955634 chrX:125955635 . . 0 22 hm1A_associated_SNPs_18038 0 0 0 3 125955624 125955640 mRNA hsa-miR-1297 CXorf64 miRanda miRanda
2192 chr3 119347670 119347670 1 + T C LUAD 119347672 + 119347652 119347692 41 AAAAAGACCGGACTACCATTATTGGGAAGTTCTGCACTGCC AAAAAGACCGGACTACCACTATTGGGAAGTTCTGCACTGCC < 41bp 0.49213795792054 0.748482785342473 0.24703947 0.21350834 prediction 0.496965570684947 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119347672 chr3:119347670 nonsynonymous SNV 0.035 2 19 hm1A_associated_SNPs_18049 0 0 0 1 119347669 119347693 mRNA hsa-miR-34c-5p PLA1A miRanda miRanda
2192 chr4 151153541 151153541 1 + A C STAD 151153543 + 151153523 151153563 41 GCCGAGTGAAACATCCCAATATCATTATGCTGGTCGAGGAG GCCGAGTGAAACATCCCACTATCATTATGCTGGTCGAGGAG < 41bp 0.512853192818105 0.761223854996898 0.30649135 0.6369255 prediction 0.496741324357585 Functional Gain - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151153543 chr4:151153541 nonsynonymous SNV 0.998 3 19 hm1A_associated_SNPs_18058 0 0 1 1 151153536 151153556 mRNA hsa-miR-338-3p DCLK2 miRanda miRanda
2192 chr2 133402856 133402856 1 - T G HNSC 133402854 - 133402834 133402874 41 GCCGAAACTGCTGCGAGGACACCGTGTACAGGAGCGGGTTG GCCGAAACTGCTGCGAGGCCACCGTGTACAGGAGCGGGTTG < 41bp 0.526692308141333 0.775040809074558 0.5813918 0.5918999 prediction 0.49669700186645 Functional Gain - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133402854 chr2:133402856 nonsynonymous SNV 0.997 3 19 hm1A_associated_SNPs_18059 0 0 0 1 133402842 133402863 mRNA hsa-miR-486-5p LYPD1 miRanda miRanda
2192 chr1 152976124 152976124 1 + G T rs28989174 152976123 + 152976103 152976143 41 ATCAGCACATTGTCACCCCAAGCCATAGTCTCTCTCTTATT ATCAGCACATTGTCACCCCAATCCATAGTCTCTCTCTTATT < 41bp 0.488852018535863 0.747849053590033 0.058870852 0.058122635 prediction 0.495698107180066 Functional Gain - SPRR3 ENSG00000163209 UTR3 Human protein_coding chr1:152976123 chr1:152976124 . . 0 22 hm1A_associated_SNPs_18081 0 0 0 2 152976107 152976129 mRNA hsa-miR-135a SPRR3 miRanda miRanda
2192 chr1 152976124 152976124 1 + G T rs28989174 152976123 + 152976103 152976143 41 ATCAGCACATTGTCACCCCAAGCCATAGTCTCTCTCTTATT ATCAGCACATTGTCACCCCAATCCATAGTCTCTCTCTTATT < 41bp 0.488852018535863 0.747849053590033 0.058870852 0.058122635 prediction 0.495698107180066 Functional Gain - SPRR3 ENSG00000163209 UTR3 Human protein_coding chr1:152976123 chr1:152976124 . . 0 22 hm1A_associated_SNPs_18081 0 0 0 2 152976107 152976129 mRNA hsa-miR-135b SPRR3 miRanda miRanda
2192 chr18 48500908 48500908 1 + T C SKCM 48500910 + 48500890 48500930 41 AGGGAACACAGACACAGCTTATGAAAAGCCAACTTAAAGCA AGGGAACACAGACACAGCCTATGAAAAGCCAACTTAAAGCA < 41bp 0.545828371390571 0.79293431964809 0.09768984 0.13369313 prediction 0.494211896515038 Functional Gain - ELAC1 ENSG00000141642;ENSG00000267699 CDS Human other chr18:48500910 chr18:48500908 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_18106 0 0 0 3 48500899 48500922 mRNA hsa-miR-135a SMAD4 miRanda miRanda
2192 chr18 48500908 48500908 1 + T C SKCM 48500910 + 48500890 48500930 41 AGGGAACACAGACACAGCTTATGAAAAGCCAACTTAAAGCA AGGGAACACAGACACAGCCTATGAAAAGCCAACTTAAAGCA < 41bp 0.545828371390571 0.79293431964809 0.09768984 0.13369313 prediction 0.494211896515038 Functional Gain - ELAC1 ENSG00000141642;ENSG00000267699 CDS Human other chr18:48500910 chr18:48500908 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_18106 0 0 0 3 48500904 48500925 mRNA hsa-miR-382 SMAD4 miRanda miRanda
2192 chr18 48500908 48500908 1 + T C SKCM 48500910 + 48500890 48500930 41 AGGGAACACAGACACAGCTTATGAAAAGCCAACTTAAAGCA AGGGAACACAGACACAGCCTATGAAAAGCCAACTTAAAGCA < 41bp 0.545828371390571 0.79293431964809 0.09768984 0.13369313 prediction 0.494211896515038 Functional Gain - ELAC1 ENSG00000141642;ENSG00000267699 CDS Human other chr18:48500910 chr18:48500908 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_18106 0 0 0 3 48500899 48500922 mRNA hsa-miR-135b SMAD4 miRanda miRanda
2192 chr12 93863087 93863087 1 + T C UCEC 93863089 + 93863069 93863109 41 TAGCTGCAGTAAAATGGGTGATGTCAAAGAGAACTATCTTG TAGCTGCAGTAAAATGGGCGATGTCAAAGAGAACTATCTTG < 41bp 0.520712571465416 0.767666053800636 0.113966286 0.17731285 prediction 0.493906964670439 Functional Gain - MRPL42 ENSG00000198015 CDS Human protein_coding chr12:93863089 chr12:93863087 nonsynonymous SNV 0.108 0 19 hm1A_associated_SNPs_18113 0 0 1 2 93863071 93863093 mRNA hsa-miR-362-3p MRPL42 miRanda miRanda
2192 chr12 93863087 93863087 1 + T C UCEC 93863089 + 93863069 93863109 41 TAGCTGCAGTAAAATGGGTGATGTCAAAGAGAACTATCTTG TAGCTGCAGTAAAATGGGCGATGTCAAAGAGAACTATCTTG < 41bp 0.520712571465416 0.767666053800636 0.113966286 0.17731285 prediction 0.493906964670439 Functional Gain - MRPL42 ENSG00000198015 CDS Human protein_coding chr12:93863089 chr12:93863087 nonsynonymous SNV 0.108 0 19 hm1A_associated_SNPs_18113 0 0 1 2 93863071 93863093 mRNA hsa-miR-329 MRPL42 miRanda miRanda
2192 chr12 28458615 28458615 1 + A C UCEC 28458617 + 28458597 28458637 41 TTTCACCATCTTCTCCTGAGATTGTACTGGACCGTGACCAC TTTCACCATCTTCTCCTGCGATTGTACTGGACCGTGACCAC < 41bp 0.512708433060259 0.759277529303603 0.18126008 0.28456226 prediction 0.493138192486688 Functional Gain - CCDC91 ENSG00000123106 CDS Human protein_coding chr12:28458617 chr12:28458615 nonsynonymous SNV 0.982 0 19 hm1A_associated_SNPs_18134 0 0 1 1 28458599 28458620 mRNA hsa-miR-216a CCDC91 miRanda miRanda
2192 chr4 74280824 74280824 1 + T C LUSC 74280826 + 74280806 74280846 41 GAGACTTGCCAAGACATATGAAACCACTCTAGAGAAGTGCT GAGACTTGCCAAGACATACGAAACCACTCTAGAGAAGTGCT < 41bp 0.541834065655833 0.788267418277548 0.12472975 0.20470873 prediction 0.492866705243431 Functional Gain - ALB ENSG00000163631 CDS Human protein_coding chr4:74280826 chr4:74280824 synonymous SNV . 0 19 hm1A_associated_SNPs_18139 0 0 1 1 74280816 74280834 mRNA hsa-miR-140-5p ALB miRanda miRanda
2192 chr5 150228068 150228068 1 + T C UCEC 150228070 + 150228050 150228090 41 AATTCAGCATGAATCATGTGATGCTTGCCAAAACCGCTGAG AATTCAGCATGAATCATGCGATGCTTGCCAAAACCGCTGAG < 41bp 0.58261372655127 0.82716378099045 0.09786418 0.22068653 prediction 0.48910010887836 Functional Gain - IRGM ENSG00000237693 CDS Human protein_coding chr5:150228070 chr5:150228068 nonsynonymous SNV 0.021 0 19 hm1A_associated_SNPs_18227 0 0 0 1 150228059 150228081 mRNA hsa-miR-182 IRGM miRanda miRanda
2192 chr6 39040638 39040638 1 + A C CESC 39040640 + 39040620 39040660 41 CCCTGCTTTCTCCCTCAGACACCTGCACTGCACCAGGAACT CCCTGCTTTCTCCCTCAGCCACCTGCACTGCACCAGGAACT < 41bp 0.512497049969696 0.756947708999859 0.08816752 0.09302834 prediction 0.488901318060325 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39040640 chr6:39040638 nonsynonymous SNV 1.000 0 19 hm1A_associated_SNPs_18232 0 0 0 3 39040638 39040650 mRNA hsa-miR-148a GLP1R miRanda miRanda
2192 chr6 39040638 39040638 1 + A C CESC 39040640 + 39040620 39040660 41 CCCTGCTTTCTCCCTCAGACACCTGCACTGCACCAGGAACT CCCTGCTTTCTCCCTCAGCCACCTGCACTGCACCAGGAACT < 41bp 0.512497049969696 0.756947708999859 0.08816752 0.09302834 prediction 0.488901318060325 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39040640 chr6:39040638 nonsynonymous SNV 1.000 0 19 hm1A_associated_SNPs_18232 0 0 0 3 39040638 39040650 mRNA hsa-miR-152 GLP1R miRanda miRanda
2192 chr6 39040638 39040638 1 + A C CESC 39040640 + 39040620 39040660 41 CCCTGCTTTCTCCCTCAGACACCTGCACTGCACCAGGAACT CCCTGCTTTCTCCCTCAGCCACCTGCACTGCACCAGGAACT < 41bp 0.512497049969696 0.756947708999859 0.08816752 0.09302834 prediction 0.488901318060325 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39040640 chr6:39040638 nonsynonymous SNV 1.000 0 19 hm1A_associated_SNPs_18232 0 0 0 3 39040638 39040650 mRNA hsa-miR-148b GLP1R miRanda miRanda
2192 chr5 72144276 72144276 1 + T C UCEC 72144278 + 72144258 72144298 41 AGCAAATCCTGCAGCTGTTGAAGGAGTCCCAGTCCCCAGAC AGCAAATCCTGCAGCTGTCGAAGGAGTCCCAGTCCCCAGAC < 41bp 0.543094241973689 0.786688833385458 0.31152657 0.3818381 prediction 0.487189182823538 Functional Gain - TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72144278 chr5:72144276 nonsynonymous SNV 0.991 5 19 hm1A_associated_SNPs_18273 0 0 1 1 72144255 72144279 mRNA hsa-miR-421 TNPO1 miRanda miRanda
2192 chrX 48126840 48126840 1 + G C rs190151430 48126842 + 48126822 48126862 41 CCCTCATCCGATTCCCCTGTATCAGTCACTGACAGTTAATA CCCTCATCCGATTCCCCTCTATCAGTCACTGACAGTTAATA < 41bp 0.521143466344503 0.764584843953128 0.06496805 0.11336514 prediction 0.486882755217249 Functional Gain - SSX1 ENSG00000126752 UTR3 Human protein_coding chrX:48126842 chrX:48126840 . . 0 19 hm1A_associated_SNPs_18278 0 0 1 1 48126833 48126851 mRNA hsa-miR-134 SSX1 miRanda miRanda
2192 chr3 111564708 111564708 1 + A C COAD 111564710 + 111564690 111564730 41 CCTTTGAGATTCAGCAGAAGATCCTGATGGAGGAGGAGGAT CCTTTGAGATTCAGCAGACGATCCTGATGGAGGAGGAGGAT < 41bp 0.458660026652025 0.743151884931312 0.27719295 0.5697952 prediction 0.486303769862625 Functional Gain - PLCXD2 ENSG00000240891 CDS Human protein_coding chr3:111564710 chr3:111564708 synonymous SNV . 0 19 hm1A_associated_SNPs_18290 0 0 1 1 111564693 111564714 mRNA hsa-miR-876-5p PLCXD2 miRanda miRanda
2192 chr8 74893607 74893607 1 + T C rs139864454 74893609 + 74893589 74893629 41 TGAGGCCACAACAGACACTTATAAAGCCATTACCTACAATG TGAGGCCACAACAGACACCTATAAAGCCATTACCTACAATG < 41bp 0.615358904166928 0.858087108382552 0.18180645 0.21668047 prediction 0.485456408431248 Functional Gain - TMEM70 ENSG00000175606 CDS Human protein_coding chr8:74893609 chr8:74893607 synonymous SNV . 0 19 hm1A_associated_SNPs_18309 1 0 1 2 74893597 74893619 mRNA hsa-miR-135a TMEM70 miRanda miRanda
2192 chr8 74893607 74893607 1 + T C rs139864454 74893609 + 74893589 74893629 41 TGAGGCCACAACAGACACTTATAAAGCCATTACCTACAATG TGAGGCCACAACAGACACCTATAAAGCCATTACCTACAATG < 41bp 0.615358904166928 0.858087108382552 0.18180645 0.21668047 prediction 0.485456408431248 Functional Gain - TMEM70 ENSG00000175606 CDS Human protein_coding chr8:74893609 chr8:74893607 synonymous SNV . 0 19 hm1A_associated_SNPs_18309 1 0 1 2 74893597 74893619 mRNA hsa-miR-135b TMEM70 miRanda miRanda
2192 chr12 109696872 109696872 1 + T C UCEC 109696874 + 109696854 109696894 41 GGGAGAAGTTGCCCCTGATGATCTTTGCCAACTGGAGGGGG GGGAGAAGTTGCCCCTGACGATCTTTGCCAACTGGAGGGGG < 41bp 0.455675576076124 0.742663241040434 0.29886806 0.59954304 prediction 0.485326482080868 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109696874 chr12:109696872 nonsynonymous SNV 0.943 3 19 hm1A_associated_SNPs_18314 0 0 1 1 109696862 109696885 mRNA hsa-miR-182 ACACB miRanda miRanda
2192 chr11 94353172 94353172 1 + T C rs16920720 94353174 + 94353154 94353194 41 CCCCCTCAGGTATGACTTTTATCTGATCAGCCAGGTGGCCT CCCCCTCAGGTATGACTTCTATCTGATCAGCCAGGTGGCCT < 41bp 0.473726138859415 0.741945124493932 0.06212032 0.09544724 prediction 0.483890248987863 Functional Gain - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94353174 chr11:94353172 synonymous SNV . 0 19 hm1A_associated_SNPs_18359 0 0 0 1 94353163 94353182 mRNA hsa-miR-383 PIWIL4 miRanda miRanda
2192 chr5 102515744 102515744 1 + A C UCEC 102515746 + 102515726 102515766 41 AAGGCAGGAGACCTTTTAAAATTGATAATGATGATGAACCA AAGGCAGGAGACCTTTTACAATTGATAATGATGATGAACCA < 41bp 0.505274564322702 0.746961377054409 0.13814852 0.12513602 prediction 0.483373625463416 Functional Gain - PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102515746 chr5:102515744 nonsynonymous SNV 0.991 0 19 hm1A_associated_SNPs_18370 0 0 1 1 102515729 102515749 mRNA hsa-miR-590-3p PPIP5K2 miRanda miRanda
2192 chr2 29072759 29072759 1 - C A UCEC 29072760 - 29072740 29072780 41 CATAGATTTGTCTTTCTTCAAGAAATTAGTTTTCTTTCCTT CATAGATTTGTCTTTCTTCAATAAATTAGTTTTCTTTCCTT < 41bp 0.518253878582594 0.759577475255646 0.04095477 0.030098379 prediction 0.482647193346105 Functional Gain - SPDYA ENSG00000163806 CDS Human protein_coding chr2:29072760 chr2:29072759 nonsynonymous SNV 0.967 0 22 hm1A_associated_SNPs_18394 0 0 1 2 29072741 29072762 mRNA hsa-miR-185 TRMT61B miRanda miRanda
2192 chr2 29072759 29072759 1 - C A UCEC 29072760 - 29072740 29072780 41 CATAGATTTGTCTTTCTTCAAGAAATTAGTTTTCTTTCCTT CATAGATTTGTCTTTCTTCAATAAATTAGTTTTCTTTCCTT < 41bp 0.518253878582594 0.759577475255646 0.04095477 0.030098379 prediction 0.482647193346105 Functional Gain - SPDYA ENSG00000163806 CDS Human protein_coding chr2:29072760 chr2:29072759 nonsynonymous SNV 0.967 0 22 hm1A_associated_SNPs_18394 0 0 1 2 29072743 29072764 mRNA hsa-miR-186 TRMT61B miRanda miRanda
2192 chr11 62435118 62435118 1 + G T READ 62435117 + 62435097 62435137 41 CCAGACATGCTGTGTCCTCAAGAATCCAACAAGCATCTTCT CCAGACATGCTGTGTCCTCAATAATCCAACAAGCATCTTCT < 41bp 0.494546135389831 0.741322143248269 0.11518499 0.11626294 prediction 0.482644286496537 Functional Gain - LBHD1 ENSG00000162194 CDS Human protein_coding chr11:62435117 chr11:62435118 nonsynonymous SNV 0.780 0 22 hm1A_associated_SNPs_18395 0 0 0 1 62435109 62435136 mRNA hsa-miR-373 METTL12 miRanda miRanda
2192 chr2 74652856 74652856 1 + G C rs199822193 74652858 + 74652838 74652878 41 CCTTCCTTTGTCCCTGTGGTATTCATAAAGTACCCGCTCCA CCTTCCTTTGTCCCTGTGCTATTCATAAAGTACCCGCTCCA < 41bp 0.555938512058565 0.797091331443047 0.099657744 0.069919705 prediction 0.482305638768965 Functional Gain - WDR54 ENSG00000005448 UTR3 Human protein_coding chr2:74652858 chr2:74652856 . . 0 19 hm1A_associated_SNPs_18408 0 0 1 1 74652842 74652865 mRNA hsa-miR-374a WDR54 miRanda miRanda
2192 chr16 80583453 80583453 1 + T C LUAD 80583455 + 80583435 80583475 41 TTCTTCATCACCTGACAATGAAAGCCAAAAGCACAGTTCGT TTCTTCATCACCTGACAACGAAAGCCAAAAGCACAGTTCGT < 41bp 0.48758184152379 0.740591142847436 0.15151075 0.17893115 prediction 0.481182285694872 Functional Gain - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80583455 chr16:80583453 nonsynonymous SNV 0.797 1 19 hm1A_associated_SNPs_18441 0 0 0 4 80583450 80583470 mRNA hsa-miR-218 DYNLRB2 miRanda miRanda
2192 chr16 80583453 80583453 1 + T C LUAD 80583455 + 80583435 80583475 41 TTCTTCATCACCTGACAATGAAAGCCAAAAGCACAGTTCGT TTCTTCATCACCTGACAACGAAAGCCAAAAGCACAGTTCGT < 41bp 0.48758184152379 0.740591142847436 0.15151075 0.17893115 prediction 0.481182285694872 Functional Gain - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80583455 chr16:80583453 nonsynonymous SNV 0.797 1 19 hm1A_associated_SNPs_18441 0 0 0 4 80583435 80583455 mRNA hsa-miR-219-5p DYNLRB2 miRanda miRanda
2192 chr16 80583453 80583453 1 + T C LUAD 80583455 + 80583435 80583475 41 TTCTTCATCACCTGACAATGAAAGCCAAAAGCACAGTTCGT TTCTTCATCACCTGACAACGAAAGCCAAAAGCACAGTTCGT < 41bp 0.48758184152379 0.740591142847436 0.15151075 0.17893115 prediction 0.481182285694872 Functional Gain - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80583455 chr16:80583453 nonsynonymous SNV 0.797 1 19 hm1A_associated_SNPs_18441 0 0 0 4 80583442 80583463 mRNA hsa-miR-135a DYNLRB2 miRanda miRanda
2192 chr16 80583453 80583453 1 + T C LUAD 80583455 + 80583435 80583475 41 TTCTTCATCACCTGACAATGAAAGCCAAAAGCACAGTTCGT TTCTTCATCACCTGACAACGAAAGCCAAAAGCACAGTTCGT < 41bp 0.48758184152379 0.740591142847436 0.15151075 0.17893115 prediction 0.481182285694872 Functional Gain - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80583455 chr16:80583453 nonsynonymous SNV 0.797 1 19 hm1A_associated_SNPs_18441 0 0 0 4 80583442 80583463 mRNA hsa-miR-135b DYNLRB2 miRanda miRanda
2192 chr10 75552298 75552298 1 + T C rs200674189 75552300 + 75552280 75552320 41 TGAGCCCCCAGATACTTATGAAGAAGATGGTGGTGTGTACT TGAGCCCCCAGATACTTACGAAGAAGATGGTGGTGTGTACT < 41bp 0.552650361546463 0.793148076750687 0.101246744 0.16769761 prediction 0.480995430408447 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75552300 chr10:75552298 synonymous SNV . 0 19 hm1A_associated_SNPs_18448 0 0 1 1 75552297 75552318 mRNA hsa-miR-362-3p KIAA0913 miRanda miRanda
2192 chr17 47329946 47329946 1 + A C LUSC 47329948 + 47329928 47329968 41 AACTGTCACCTTCTGGTGAGATTTACAATTGCACTGCTACA AACTGTCACCTTCTGGTGCGATTTACAATTGCACTGCTACA < 41bp 0.555677971362759 0.794864181824337 0.07705063 0.2316356 prediction 0.478372420923156 Functional Gain - FLJ40194 ENSG00000177369 ncRNA_exonic Human processed_transcript chr17:47329948 chr17:47329946 . . 0 19 hm1A_associated_SNPs_18529 0 0 0 10 47329939 47329961 mRNA hsa-miR-33a FLJ40194 miRanda miRanda
2192 chr17 47329946 47329946 1 + A C LUSC 47329948 + 47329928 47329968 41 AACTGTCACCTTCTGGTGAGATTTACAATTGCACTGCTACA AACTGTCACCTTCTGGTGCGATTTACAATTGCACTGCTACA < 41bp 0.555677971362759 0.794864181824337 0.07705063 0.2316356 prediction 0.478372420923156 Functional Gain - FLJ40194 ENSG00000177369 ncRNA_exonic Human processed_transcript chr17:47329948 chr17:47329946 . . 0 19 hm1A_associated_SNPs_18529 0 0 0 10 47329943 47329964 mRNA hsa-miR-148a FLJ40194 miRanda miRanda
2192 chr17 47329946 47329946 1 + A C LUSC 47329948 + 47329928 47329968 41 AACTGTCACCTTCTGGTGAGATTTACAATTGCACTGCTACA AACTGTCACCTTCTGGTGCGATTTACAATTGCACTGCTACA < 41bp 0.555677971362759 0.794864181824337 0.07705063 0.2316356 prediction 0.478372420923156 Functional Gain - FLJ40194 ENSG00000177369 ncRNA_exonic Human processed_transcript chr17:47329948 chr17:47329946 . . 0 19 hm1A_associated_SNPs_18529 0 0 0 10 47329931 47329951 mRNA hsa-miR-216a FLJ40194 miRanda miRanda
2192 chr17 47329946 47329946 1 + A C LUSC 47329948 + 47329928 47329968 41 AACTGTCACCTTCTGGTGAGATTTACAATTGCACTGCTACA AACTGTCACCTTCTGGTGCGATTTACAATTGCACTGCTACA < 41bp 0.555677971362759 0.794864181824337 0.07705063 0.2316356 prediction 0.478372420923156 Functional Gain - FLJ40194 ENSG00000177369 ncRNA_exonic Human processed_transcript chr17:47329948 chr17:47329946 . . 0 19 hm1A_associated_SNPs_18529 0 0 0 10 47329942 47329963 mRNA hsa-miR-130a FLJ40194 miRanda miRanda
2192 chr17 47329946 47329946 1 + A C LUSC 47329948 + 47329928 47329968 41 AACTGTCACCTTCTGGTGAGATTTACAATTGCACTGCTACA AACTGTCACCTTCTGGTGCGATTTACAATTGCACTGCTACA < 41bp 0.555677971362759 0.794864181824337 0.07705063 0.2316356 prediction 0.478372420923156 Functional Gain - FLJ40194 ENSG00000177369 ncRNA_exonic Human processed_transcript chr17:47329948 chr17:47329946 . . 0 19 hm1A_associated_SNPs_18529 0 0 0 10 47329943 47329964 mRNA hsa-miR-152 FLJ40194 miRanda miRanda
2192 chr17 47329946 47329946 1 + A C LUSC 47329948 + 47329928 47329968 41 AACTGTCACCTTCTGGTGAGATTTACAATTGCACTGCTACA AACTGTCACCTTCTGGTGCGATTTACAATTGCACTGCTACA < 41bp 0.555677971362759 0.794864181824337 0.07705063 0.2316356 prediction 0.478372420923156 Functional Gain - FLJ40194 ENSG00000177369 ncRNA_exonic Human processed_transcript chr17:47329948 chr17:47329946 . . 0 19 hm1A_associated_SNPs_18529 0 0 0 10 47329940 47329963 mRNA hsa-miR-301a FLJ40194 miRanda miRanda
2192 chr17 47329946 47329946 1 + A C LUSC 47329948 + 47329928 47329968 41 AACTGTCACCTTCTGGTGAGATTTACAATTGCACTGCTACA AACTGTCACCTTCTGGTGCGATTTACAATTGCACTGCTACA < 41bp 0.555677971362759 0.794864181824337 0.07705063 0.2316356 prediction 0.478372420923156 Functional Gain - FLJ40194 ENSG00000177369 ncRNA_exonic Human processed_transcript chr17:47329948 chr17:47329946 . . 0 19 hm1A_associated_SNPs_18529 0 0 0 10 47329942 47329963 mRNA hsa-miR-130b FLJ40194 miRanda miRanda
2192 chr17 47329946 47329946 1 + A C LUSC 47329948 + 47329928 47329968 41 AACTGTCACCTTCTGGTGAGATTTACAATTGCACTGCTACA AACTGTCACCTTCTGGTGCGATTTACAATTGCACTGCTACA < 41bp 0.555677971362759 0.794864181824337 0.07705063 0.2316356 prediction 0.478372420923156 Functional Gain - FLJ40194 ENSG00000177369 ncRNA_exonic Human processed_transcript chr17:47329948 chr17:47329946 . . 0 19 hm1A_associated_SNPs_18529 0 0 0 10 47329942 47329964 mRNA hsa-miR-148b FLJ40194 miRanda miRanda
2192 chr17 47329946 47329946 1 + A C LUSC 47329948 + 47329928 47329968 41 AACTGTCACCTTCTGGTGAGATTTACAATTGCACTGCTACA AACTGTCACCTTCTGGTGCGATTTACAATTGCACTGCTACA < 41bp 0.555677971362759 0.794864181824337 0.07705063 0.2316356 prediction 0.478372420923156 Functional Gain - FLJ40194 ENSG00000177369 ncRNA_exonic Human processed_transcript chr17:47329948 chr17:47329946 . . 0 19 hm1A_associated_SNPs_18529 0 0 0 10 47329938 47329963 mRNA hsa-miR-454 FLJ40194 miRanda miRanda
2192 chr17 47329946 47329946 1 + A C LUSC 47329948 + 47329928 47329968 41 AACTGTCACCTTCTGGTGAGATTTACAATTGCACTGCTACA AACTGTCACCTTCTGGTGCGATTTACAATTGCACTGCTACA < 41bp 0.555677971362759 0.794864181824337 0.07705063 0.2316356 prediction 0.478372420923156 Functional Gain - FLJ40194 ENSG00000177369 ncRNA_exonic Human processed_transcript chr17:47329948 chr17:47329946 . . 0 19 hm1A_associated_SNPs_18529 0 0 0 10 47329940 47329963 mRNA hsa-miR-301b FLJ40194 miRanda miRanda
2192 chr12 53346505 53346505 1 + G T GBM 53346504 + 53346484 53346524 41 TGGGCTTGGTCTTCTGTTACAGTCTTGGTGATGCCTTGGAC TGGGCTTGGTCTTCTGTTACATTCTTGGTGATGCCTTGGAC < 41bp 0.470165004747774 0.739182541780026 0.16338757 0.15125737 prediction 0.478365083560053 Functional Gain - KRT18 ENSG00000225410;ENSG00000111057 ncRNA_exonic;splicing Human other chr12:53346504 chr12:53346505 . 0.902 0 22 hm1A_associated_SNPs_18530 0 0 1 1 53346501 53346521 mRNA hsa-miR-124 KRT18 miRanda miRanda
2192 chr20 29632665 29632665 1 + T C UCEC 29632667 + 29632647 29632687 41 AATAAGTAAAGAAGAGAGTAAAATTCTTAAAAAGGCTCAGA AATAAGTAAAGAAGAGAGCAAAATTCTTAAAAAGGCTCAGA < 41bp 0.55385421336565 0.792769397109161 0.051970363 0.075428784 prediction 0.477830367487022 Functional Gain - FRG1BP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29632667 chr20:29632665 synonymous SNV . 0 19 hm1A_associated_SNPs_18551 0 0 1 2 29632655 29632676 mRNA hsa-miR-186 FRG1B miRanda miRanda
2192 chr20 29632665 29632665 1 + T C UCEC 29632667 + 29632647 29632687 41 AATAAGTAAAGAAGAGAGTAAAATTCTTAAAAAGGCTCAGA AATAAGTAAAGAAGAGAGCAAAATTCTTAAAAAGGCTCAGA < 41bp 0.55385421336565 0.792769397109161 0.051970363 0.075428784 prediction 0.477830367487022 Functional Gain - FRG1BP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29632667 chr20:29632665 synonymous SNV . 0 19 hm1A_associated_SNPs_18551 0 0 1 2 29632652 29632672 mRNA hsa-miR-590-3p FRG1B miRanda miRanda
2192 chr16 73127590 73127590 1 + T C UCEC 73127592 + 73127572 73127612 41 CTGATTAAATACAGGACATTATCTCACCATAATGCCCTCCT CTGATTAAATACAGGACACTATCTCACCATAATGCCCTCCT < 41bp 0.581311917216655 0.820100054787613 0.1977402 0.18540841 prediction 0.477576275141917 Functional Gain - HCCAT5 ENSG00000260880 ncRNA_exonic Human lincRNA chr16:73127592 chr16:73127590 . . 0 19 hm1A_associated_SNPs_18562 0 0 0 2 73127574 73127595 mRNA hsa-miR-190 HTA miRanda miRanda
2192 chr16 73127590 73127590 1 + T C UCEC 73127592 + 73127572 73127612 41 CTGATTAAATACAGGACATTATCTCACCATAATGCCCTCCT CTGATTAAATACAGGACACTATCTCACCATAATGCCCTCCT < 41bp 0.581311917216655 0.820100054787613 0.1977402 0.18540841 prediction 0.477576275141917 Functional Gain - HCCAT5 ENSG00000260880 ncRNA_exonic Human lincRNA chr16:73127592 chr16:73127590 . . 0 19 hm1A_associated_SNPs_18562 0 0 0 2 73127574 73127595 mRNA hsa-miR-190b HTA miRanda miRanda
2192 chr22 42908289 42908289 1 + C T rs5758776 42908288 + 42908268 42908308 41 CTAGTGCTCCCAGACTCAACACTGGGACTCTGAGTTCCTGA CTAGTGCTCCCAGACTCAACATTGGGACTCTGAGTTCCTGA < 41bp 0.514695629933219 0.753371100197216 0.30952036 0.30842447 prediction 0.477350940527994 Functional Gain - SERHL ENSG00000172250 ncRNA_exonic Human processed_transcript chr22:42908288 chr22:42908289 . . 0 22 hm1A_associated_SNPs_18568 0 0 0 1 42908289 42908308 mRNA hsa-miR-873 SERHL miRanda miRanda
2192 chr5 86637124 86637124 1 + A C UCEC 86637126 + 86637106 86637146 41 GGGCCGGGAAGAAGATCCACATGAAGGAAAAATGTGAGTTT GGGCCGGGAAGAAGATCCCCATGAAGGAAAAATGTGAGTTT < 41bp 0.530379036617475 0.768026135812644 0.06270334 0.2915507 prediction 0.475294198390337 Functional Gain - RASA1 ENSG00000145715 CDS Human protein_coding chr5:86637126 chr5:86637124 synonymous SNV . 0 19 hm1A_associated_SNPs_18616 0 0 1 2 86637112 86637133 mRNA hsa-miR-205 RASA1 miRanda miRanda
2192 chr5 86637124 86637124 1 + A C UCEC 86637126 + 86637106 86637146 41 GGGCCGGGAAGAAGATCCACATGAAGGAAAAATGTGAGTTT GGGCCGGGAAGAAGATCCCCATGAAGGAAAAATGTGAGTTT < 41bp 0.530379036617475 0.768026135812644 0.06270334 0.2915507 prediction 0.475294198390337 Functional Gain - RASA1 ENSG00000145715 CDS Human protein_coding chr5:86637126 chr5:86637124 synonymous SNV . 0 19 hm1A_associated_SNPs_18616 0 0 1 2 86637107 86637124 mRNA hsa-miR-876-5p RASA1 miRanda miRanda
2192 chr1 160137181 160137181 1 + T C UCEC 160137183 + 160137163 160137203 41 GGTGGCAGAGATTCCCTTTAATTCTACCAACAAGTACCAGG GGTGGCAGAGATTCCCTTCAATTCTACCAACAAGTACCAGG < 41bp 0.554617920523297 0.792181038859455 0.10959977 0.28570744 prediction 0.475126236672318 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160137183 chr1:160137181 synonymous SNV . 0 19 hm1A_associated_SNPs_18621 0 0 0 1 160137181 160137203 mRNA hsa-miR-422a ATP1A4 miRanda miRanda
2192 chr20 36965617 36965617 1 + A C rs1131847 36965619 + 36965599 36965639 41 TGCCGGGGGCTGTCAGCCACACCTGTTCCTGATGGGCTGTG TGCCGGGGGCTGTCAGCCCCACCTGTTCCTGATGGGCTGTG < 41bp 0.561359720039767 0.798782949885314 0.10531536 0.16617951 prediction 0.474846459691094 Functional Gain - BPI ENSG00000101425 UTR3 Human protein_coding chr20:36965619 chr20:36965617 . . 0 19 hm1A_associated_SNPs_18638 0 0 0 1 36965610 36965630 mRNA hsa-miR-873 BPI miRanda miRanda
2192 chr1 151139669 151139669 1 + T C UCEC 151139671 + 151139651 151139691 41 CAAAACATCAGAATGAATTGAGAAGGGAAGAAACCAAAGCT CAAAACATCAGAATGAATCGAGAAGGGAAGAAACCAAAGCT < 41bp 0.487158936743224 0.737281900785095 0.4641189 0.5386552 prediction 0.474563801570189 Functional Gain - SCNM1;TNFAIP8L2-SCNM1 ENSG00000163156 CDS Human protein_coding chr1:151139671 chr1:151139669 nonsynonymous SNV 0.727 1 19 hm1A_associated_SNPs_18652 0 0 1 1 151139669 151139690 mRNA hsa-miR-9 SCNM1 miRanda miRanda
2192 chr1 212988450 212988450 1 + G C LUSC 212988452 + 212988432 212988472 41 TATAGAAGTGACGACACAGAATGCATTAAAACTGTTTCCTA TATAGAAGTGACGACACACAATGCATTAAAACTGTTTCCTA < 41bp 0.482753041772675 0.737108421986915 0.16376203 0.16198367 prediction 0.47421684397383 Functional Gain - TATDN3 ENSG00000203705 CDS Human protein_coding chr1:212988452 chr1:212988450 nonsynonymous SNV 0.989 1 19 hm1A_associated_SNPs_18658 0 0 0 1 212988438 212988460 mRNA hsa-miR-155 TATDN3 miRanda miRanda
2192 chr15 43675579 43675579 1 + T C STAD 43675581 + 43675561 43675601 41 ACTCCTCTTGGACCAGCATGAAGAATTCTTTATCAAACAGG ACTCCTCTTGGACCAGCACGAAGAATTCTTTATCAAACAGG < 41bp 0.447435767678112 0.736903036891115 0.09681651 0.14428598 prediction 0.47380607378223 Functional Gain - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43675581 chr15:43675579 synonymous SNV . 0 19 hm1A_associated_SNPs_18669 0 0 1 1 43675570 43675592 mRNA hsa-miR-186 TUBGCP4 miRanda miRanda
2192 chr10 1126020 1126020 1 + T C STAD 1126022 + 1126002 1126042 41 CGATTGATGGAGCAGAGCTGAGTAAGGGCCAACTCAAAACA CGATTGATGGAGCAGAGCCGAGTAAGGGCCAACTCAAAACA < 41bp 0.534540815929137 0.770720228624682 0.52390754 0.55815095 prediction 0.472358825391089 Functional Gain - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1126022 chr10:1126020 nonsynonymous SNV 0.994 1 19 hm1A_associated_SNPs_18716 0 0 1 1 1126010 1126033 mRNA hsa-miR-328 WDR37 miRanda miRanda
2192 chr3 158371188 158371188 1 + A C UCEC 158371190 + 158371170 158371210 41 AGGAGTTCAGCCTCTTTTAGATGCTGTTTTAGAATACCTCC AGGAGTTCAGCCTCTTTTCGATGCTGTTTTAGAATACCTCC < 41bp 0.44855225458613 0.736071297707873 0.071106285 0.22060665 prediction 0.472142595415746 Functional Gain - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158371190 chr3:158371188 nonsynonymous SNV 0.999 5 19 hm1A_associated_SNPs_18720 0 0 1 1 158371188 158371210 mRNA hsa-miR-202 GFM1 miRanda miRanda
2192 chr3 58303636 58303636 1 + A C rs79991831 58303638 + 58303618 58303658 41 CAGCTCTCCTAGGAACTAAAATGCCAGGGCCAGGCTGTGTA CAGCTCTCCTAGGAACTACAATGCCAGGGCCAGGCTGTGTA < 41bp 0.627025794968552 0.862740457505321 0.104310006 0.115837485 prediction 0.471429325073538 Functional Gain - HTD2 ENSG00000255154 CDS Human protein_coding chr3:58303638 chr3:58303636 nonsynonymous SNV 1.000 0 19 hm1A_associated_SNPs_18757 0 0 1 2 58303629 58303650 mRNA hsa-miR-328 RPP14 miRanda miRanda
2192 chr3 58303636 58303636 1 + A C rs79991831 58303638 + 58303618 58303658 41 CAGCTCTCCTAGGAACTAAAATGCCAGGGCCAGGCTGTGTA CAGCTCTCCTAGGAACTACAATGCCAGGGCCAGGCTGTGTA < 41bp 0.627025794968552 0.862740457505321 0.104310006 0.115837485 prediction 0.471429325073538 Functional Gain - HTD2 ENSG00000255154 CDS Human protein_coding chr3:58303638 chr3:58303636 nonsynonymous SNV 1.000 0 19 hm1A_associated_SNPs_18757 0 0 1 2 58303636 58303658 mRNA hsa-miR-329 RPP14 miRanda miRanda
2192 chr10 102824622 102824622 1 + T C STAD 102824624 + 102824604 102824644 41 TCCCCCAGCTGCGATCACTAAACCTGGTTCCTGAGGAGGAG TCCCCCAGCTGCGATCACCAAACCTGGTTCCTGAGGAGGAG < 41bp 0.52749831498017 0.762719282478355 0.37147468 0.5246669 prediction 0.470441934996371 Functional Gain - KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824624 chr10:102824622 nonsynonymous SNV 0.049 0 19 hm1A_associated_SNPs_18783 0 0 1 1 102824615 102824637 mRNA hsa-miR-873 KAZALD1 miRanda miRanda
2192 chr16 74339784 74339784 1 + C T rs534194805 74339783 + 74339763 74339803 41 GTCACTCTTGCTGTGGTGCTACGTGGAAGTGAATGGAGACT GTCACTCTTGCTGTGGTGCTATGTGGAAGTGAATGGAGACT < 41bp 0.477666461489738 0.73521744551534 0.27745938 0.20332494 prediction 0.47043489103068 Functional Gain - PSMD7 ENSG00000259972 ncRNA_intronic Human processed_transcript chr16:74339783 chr16:74339784 . . 0 22 hm1A_associated_SNPs_18784 0 0 1 1 74339779 74339801 mRNA hsa-miR-136 PSMD7 miRanda miRanda
2192 chr1 151743735 151743735 1 + A C rs146266963 151743737 + 151743717 151743757 41 GAGGGGCTGGAAGCCTTGACACATGGAATCAGGGGCCCGGG GAGGGGCTGGAAGCCTTGCCACATGGAATCAGGGGCCCGGG < 41bp 0.587051108901799 0.822100420531931 0.10807985 0.11096877 prediction 0.470098623260263 Functional Gain - OAZ3 ENSG00000143450 CDS Human protein_coding chr1:151743737 chr1:151743735 stoploss 0.232 0 19 hm1A_associated_SNPs_18793 0 0 0 2 151743720 151743743 mRNA hsa-miR-199a-5p OAZ3 miRanda miRanda
2192 chr1 151743735 151743735 1 + A C rs146266963 151743737 + 151743717 151743757 41 GAGGGGCTGGAAGCCTTGACACATGGAATCAGGGGCCCGGG GAGGGGCTGGAAGCCTTGCCACATGGAATCAGGGGCCCGGG < 41bp 0.587051108901799 0.822100420531931 0.10807985 0.11096877 prediction 0.470098623260263 Functional Gain - OAZ3 ENSG00000143450 CDS Human protein_coding chr1:151743737 chr1:151743735 stoploss 0.232 0 19 hm1A_associated_SNPs_18793 0 0 0 2 151743720 151743743 mRNA hsa-miR-199b-5p OAZ3 miRanda miRanda
2192 chr7 102584731 102584731 1 + G C SKCM 102584733 + 102584713 102584753 41 CAAAACTTTGACTATGGCGTATTAGAAGACTTGTATTTTTT CAAAACTTTGACTATGGCCTATTAGAAGACTTGTATTTTTT < 41bp 0.477947987599494 0.734829688025208 0.10601103 0.070224255 prediction 0.469659376050415 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584733 chr7:102584731 nonsynonymous SNV 0.732 4 19 hm1A_associated_SNPs_18807 0 0 0 2 102584728 102584749 mRNA hsa-miR-381 LRRC17 miRanda miRanda
2192 chr7 102584731 102584731 1 + G C SKCM 102584733 + 102584713 102584753 41 CAAAACTTTGACTATGGCGTATTAGAAGACTTGTATTTTTT CAAAACTTTGACTATGGCCTATTAGAAGACTTGTATTTTTT < 41bp 0.477947987599494 0.734829688025208 0.10601103 0.070224255 prediction 0.469659376050415 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584733 chr7:102584731 nonsynonymous SNV 0.732 4 19 hm1A_associated_SNPs_18807 0 0 0 2 102584728 102584749 mRNA hsa-miR-300 LRRC17 miRanda miRanda
2192 chr9 74561986 74561986 1 + T C GBM 74561988 + 74561968 74562008 41 AAGTTCTTGAGTGGCGTGTAAAATACAGCAAATACAAACCA AAGTTCTTGAGTGGCGTGCAAAATACAGCAAATACAAACCA < 41bp 0.568289654779361 0.802636914386773 0.056859434 0.07956284 prediction 0.468694519214823 Functional Gain - C9orf85 ENSG00000155621 CDS Human protein_coding chr9:74561988 chr9:74561986 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_18843 0 0 1 1 74561979 74562002 mRNA hsa-miR-137 C9orf85 miRanda miRanda
2192 chr15 49575851 49575851 1 + A C GBM 49575853 + 49575833 49575873 41 TTGCCAACAGTTGTGTGGAGATGAATAAGGCAGCAACTTCC TTGCCAACAGTTGTGTGGCGATGAATAAGGCAGCAACTTCC < 41bp 0.541196532022161 0.775326022187887 0.068586946 0.09912941 prediction 0.468258980331452 Functional Gain - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49575853 chr15:49575851 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_18869 0 0 1 8 49575849 49575872 mRNA hsa-miR-302a GALK2 miRanda miRanda
2192 chr15 49575851 49575851 1 + A C GBM 49575853 + 49575833 49575873 41 TTGCCAACAGTTGTGTGGAGATGAATAAGGCAGCAACTTCC TTGCCAACAGTTGTGTGGCGATGAATAAGGCAGCAACTTCC < 41bp 0.541196532022161 0.775326022187887 0.068586946 0.09912941 prediction 0.468258980331452 Functional Gain - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49575853 chr15:49575851 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_18869 0 0 1 8 49575849 49575872 mRNA hsa-miR-302b GALK2 miRanda miRanda
2192 chr15 49575851 49575851 1 + A C GBM 49575853 + 49575833 49575873 41 TTGCCAACAGTTGTGTGGAGATGAATAAGGCAGCAACTTCC TTGCCAACAGTTGTGTGGCGATGAATAAGGCAGCAACTTCC < 41bp 0.541196532022161 0.775326022187887 0.068586946 0.09912941 prediction 0.468258980331452 Functional Gain - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49575853 chr15:49575851 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_18869 0 0 1 8 49575849 49575872 mRNA hsa-miR-302c GALK2 miRanda miRanda
2192 chr15 49575851 49575851 1 + A C GBM 49575853 + 49575833 49575873 41 TTGCCAACAGTTGTGTGGAGATGAATAAGGCAGCAACTTCC TTGCCAACAGTTGTGTGGCGATGAATAAGGCAGCAACTTCC < 41bp 0.541196532022161 0.775326022187887 0.068586946 0.09912941 prediction 0.468258980331452 Functional Gain - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49575853 chr15:49575851 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_18869 0 0 1 8 49575849 49575872 mRNA hsa-miR-302d GALK2 miRanda miRanda
2192 chr15 49575851 49575851 1 + A C GBM 49575853 + 49575833 49575873 41 TTGCCAACAGTTGTGTGGAGATGAATAAGGCAGCAACTTCC TTGCCAACAGTTGTGTGGCGATGAATAAGGCAGCAACTTCC < 41bp 0.541196532022161 0.775326022187887 0.068586946 0.09912941 prediction 0.468258980331452 Functional Gain - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49575853 chr15:49575851 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_18869 0 0 1 8 49575849 49575872 mRNA hsa-miR-372 GALK2 miRanda miRanda
2192 chr15 49575851 49575851 1 + A C GBM 49575853 + 49575833 49575873 41 TTGCCAACAGTTGTGTGGAGATGAATAAGGCAGCAACTTCC TTGCCAACAGTTGTGTGGCGATGAATAAGGCAGCAACTTCC < 41bp 0.541196532022161 0.775326022187887 0.068586946 0.09912941 prediction 0.468258980331452 Functional Gain - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49575853 chr15:49575851 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_18869 0 0 1 8 49575851 49575872 mRNA hsa-miR-520e GALK2 miRanda miRanda
2192 chr15 49575851 49575851 1 + A C GBM 49575853 + 49575833 49575873 41 TTGCCAACAGTTGTGTGGAGATGAATAAGGCAGCAACTTCC TTGCCAACAGTTGTGTGGCGATGAATAAGGCAGCAACTTCC < 41bp 0.541196532022161 0.775326022187887 0.068586946 0.09912941 prediction 0.468258980331452 Functional Gain - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49575853 chr15:49575851 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_18869 0 0 1 8 49575851 49575872 mRNA hsa-miR-520b GALK2 miRanda miRanda
2192 chr15 49575851 49575851 1 + A C GBM 49575853 + 49575833 49575873 41 TTGCCAACAGTTGTGTGGAGATGAATAAGGCAGCAACTTCC TTGCCAACAGTTGTGTGGCGATGAATAAGGCAGCAACTTCC < 41bp 0.541196532022161 0.775326022187887 0.068586946 0.09912941 prediction 0.468258980331452 Functional Gain - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49575853 chr15:49575851 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_18869 0 0 1 8 49575850 49575872 mRNA hsa-miR-520c-3p GALK2 miRanda miRanda
2192 chr11 60454522 60454522 1 + T C rs556565591 60454524 + 60454504 60454544 41 TGAATTAGCGAAGAACTCTAATTTTTTCAAGCAGCCACATG TGAATTAGCGAAGAACTCCAATTTTTTCAAGCAGCCACATG < 41bp 0.464798368812902 0.733676847200131 0.088891834 0.07008082 prediction 0.467353694400261 Functional Gain - LINC00301 ENSG00000181995 ncRNA_exonic Human lincRNA chr11:60454524 chr11:60454522 . . 0 19 hm1A_associated_SNPs_18910 0 0 0 1 60454516 60454537 mRNA hsa-miR-653 C11orf64 miRanda miRanda
2192 chr8 22460793 22460793 1 + C T COAD 22460792 + 22460772 22460812 41 TCATTAGTGGTTAAGAAGCAACGAGCAAAAAACCTTTCTGT TCATTAGTGGTTAAGAAGCAATGAGCAAAAAACCTTTCTGT < 41bp 0.473868688114935 0.733485534088933 0.3488774 0.27838013 prediction 0.466971068177866 Functional Gain - C8orf58 ENSG00000241852 CDS Human protein_coding chr8:22460792 chr8:22460793 stopgain 0.968 0 22 hm1A_associated_SNPs_18926 0 0 0 1 22460785 22460803 mRNA hsa-miR-129-5p C8orf58 miRanda miRanda
2192 chr16 71417314 71417314 1 + T C rs114651335 71417316 + 71417296 71417336 41 GGCGAACCGGCCGTACGATGAGCCCAAGCTCCAGGAATACA GGCGAACCGGCCGTACGACGAGCCCAAGCTCCAGGAATACA < 41bp 0.581987008359922 0.815429698616032 0.5320377 0.5428646 prediction 0.466885380512219 Functional Gain - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71417316 chr16:71417314 synonymous SNV . 0 19 hm1A_associated_SNPs_18930 0 0 0 3 71417309 71417330 mRNA hsa-miR-378 CALB2 miRanda miRanda
2192 chr16 71417314 71417314 1 + T C rs114651335 71417316 + 71417296 71417336 41 GGCGAACCGGCCGTACGATGAGCCCAAGCTCCAGGAATACA GGCGAACCGGCCGTACGACGAGCCCAAGCTCCAGGAATACA < 41bp 0.581987008359922 0.815429698616032 0.5320377 0.5428646 prediction 0.466885380512219 Functional Gain - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71417316 chr16:71417314 synonymous SNV . 0 19 hm1A_associated_SNPs_18930 0 0 0 3 71417308 71417330 mRNA hsa-miR-422a CALB2 miRanda miRanda
2192 chr16 71417314 71417314 1 + T C rs114651335 71417316 + 71417296 71417336 41 GGCGAACCGGCCGTACGATGAGCCCAAGCTCCAGGAATACA GGCGAACCGGCCGTACGACGAGCCCAAGCTCCAGGAATACA < 41bp 0.581987008359922 0.815429698616032 0.5320377 0.5428646 prediction 0.466885380512219 Functional Gain - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71417316 chr16:71417314 synonymous SNV . 0 19 hm1A_associated_SNPs_18930 0 0 0 3 71417292 71417315 mRNA hsa-miR-487b CALB2 miRanda miRanda
2192 chr5 93966295 93966295 1 + A C READ 93966297 + 93966277 93966317 41 CTTATGAATGGGGATATAAAATTGAAAAAGATTCCCGTTAT CTTATGAATGGGGATATACAATTGAAAAAGATTCCCGTTAT < 41bp 0.535107522618438 0.768440627471895 0.10005084 0.091496974 prediction 0.466666209706915 Functional Gain - SLF1 ENSG00000133302 CDS Human protein_coding chr5:93966297 chr5:93966295 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_18940 0 0 1 1 93966280 93966300 mRNA hsa-miR-590-3p ANKRD32 miRanda miRanda
2192 chr7 64643402 64643402 1 + T C UCEC 64643404 + 64643384 64643424 41 TGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGA TGAACTCTTATGCTGTACCAATGTTTCAACCAAAGAAGGGA < 41bp 0.556601941944871 0.789861207223332 0.04712087 0.04440826 prediction 0.466518530556922 Functional Gain - INTS4P1 ENSG00000164669 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64643404 chr7:64643402 . . 0 19 hm1A_associated_SNPs_18945 0 0 0 2 64643396 64643419 mRNA hsa-miR-9 INTS4L1 miRanda miRanda
2192 chr7 64643402 64643402 1 + T C UCEC 64643404 + 64643384 64643424 41 TGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGA TGAACTCTTATGCTGTACCAATGTTTCAACCAAAGAAGGGA < 41bp 0.556601941944871 0.789861207223332 0.04712087 0.04440826 prediction 0.466518530556922 Functional Gain - INTS4P1 ENSG00000164669 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64643404 chr7:64643402 . . 0 19 hm1A_associated_SNPs_18945 0 0 0 2 64643388 64643411 mRNA hsa-miR-494 INTS4L1 miRanda miRanda
2192 chr3 14489246 14489246 1 + A C COAD 14489248 + 14489228 14489268 41 CACCTCACTGCATGGAGGACACCATGCGCAAGAACAAGAGT CACCTCACTGCATGGAGGCCACCATGCGCAAGAACAAGAGT < 41bp 0.504304300827637 0.737287335677378 0.166626 0.16086552 prediction 0.465966069699482 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14489248 chr3:14489246 nonsynonymous SNV 0.999 1 19 hm1A_associated_SNPs_18965 0 0 1 1 14489231 14489255 mRNA hsa-miR-138 SLC6A6 miRanda miRanda
2192 chr19 54648045 54648045 1 + C T UCEC 54648044 + 54648024 54648064 41 GAGTCACTGTCAGTGCAGACACGCAAGAAGAAGGGCGACAA GAGTCACTGTCAGTGCAGACATGCAAGAAGAAGGGCGACAA < 41bp 0.496196693381207 0.732743308777579 0.4338699 0.307517 prediction 0.465486617555158 Functional Gain - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54648044 chr19:54648045 nonsynonymous SNV 0.996 4 22 hm1A_associated_SNPs_18979 0 0 1 1 54648026 54648047 mRNA hsa-miR-187 CNOT3 miRanda miRanda
2192 chr4 995305 995305 1 + T C rs6815946 995307 + 995287 995327 41 GAACTTCGAGACGTGGAATGAGCCAGACCACCACGACTTTG GAACTTCGAGACGTGGAACGAGCCAGACCACCACGACTTTG < 41bp 0.477546460435565 0.732618327665715 0.5772749 0.6797917 prediction 0.46523665533143 Functional Gain - IDUA ENSG00000127415 CDS Human protein_coding chr4:995307 chr4:995305 synonymous SNV . 0 19 hm1A_associated_SNPs_18992 2 0 1 1 995287 995313 mRNA hsa-miR-149 IDUA miRanda miRanda
2192 chr17 6799649 6799649 1 + T C UCEC 6799651 + 6799631 6799671 41 GTAGGCTGGATCTCTGTTTGAAGTGGATTTCTCCTTGCTGG GTAGGCTGGATCTCTGTTCGAAGTGGATTTCTCCTTGCTGG < 41bp 0.502051050634375 0.734588989142507 0.12376696 0.272093 prediction 0.465075877016264 Functional Gain - ALOX12P2 ENSG00000262943 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:6799651 chr17:6799649 . . 0 19 hm1A_associated_SNPs_19003 0 0 1 2 6799643 6799664 mRNA hsa-miR-539 ALOX12P2 miRanda miRanda
2192 chr17 6799649 6799649 1 + T C UCEC 6799651 + 6799631 6799671 41 GTAGGCTGGATCTCTGTTTGAAGTGGATTTCTCCTTGCTGG GTAGGCTGGATCTCTGTTCGAAGTGGATTTCTCCTTGCTGG < 41bp 0.502051050634375 0.734588989142507 0.12376696 0.272093 prediction 0.465075877016264 Functional Gain - ALOX12P2 ENSG00000262943 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:6799651 chr17:6799649 . . 0 19 hm1A_associated_SNPs_19003 0 0 1 2 6799635 6799652 mRNA hsa-miR-421 ALOX12P2 miRanda miRanda
2192 chr12 9020917 9020917 1 + C T rs753841404 9020916 + 9020896 9020936 41 AAGCTAGATGTGAGCAACCGACTTCACCTCGATCCTTGACT AAGCTAGATGTGAGCAACCGATTTCACCTCGATCCTTGACT < 41bp 0.524720849922388 0.756481265436637 0.13391775 0.22707334 prediction 0.4635208310285 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9020916 chr12:9020917 nonsynonymous SNV 0.005 0 22 hm1A_associated_SNPs_19066 0 0 0 1 9020903 9020926 mRNA hsa-let-7d A2ML1 miRanda miRanda
2192 chr3 38350542 38350542 1 + C T rs115112284 38350541 + 38350521 38350561 41 GTTGCTGACAGGGATCGCCTACAGTCTTCCCCACTGGCAGC GTTGCTGACAGGGATCGCCTATAGTCTTCCCCACTGGCAGC < 41bp 0.539459758695537 0.771155599033397 0.24414751 0.2737706 prediction 0.46339168067572 Functional Gain - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38350541 chr3:38350542 synonymous SNV . 0 22 hm1A_associated_SNPs_19070 0 0 0 3 38350541 38350563 mRNA hsa-miR-22 SLC22A14 miRanda miRanda
2192 chr3 38350542 38350542 1 + C T rs115112284 38350541 + 38350521 38350561 41 GTTGCTGACAGGGATCGCCTACAGTCTTCCCCACTGGCAGC GTTGCTGACAGGGATCGCCTATAGTCTTCCCCACTGGCAGC < 41bp 0.539459758695537 0.771155599033397 0.24414751 0.2737706 prediction 0.46339168067572 Functional Gain - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38350541 chr3:38350542 synonymous SNV . 0 22 hm1A_associated_SNPs_19070 0 0 0 3 38350525 38350551 mRNA hsa-miR-7 SLC22A14 miRanda miRanda
2192 chr3 38350542 38350542 1 + C T rs115112284 38350541 + 38350521 38350561 41 GTTGCTGACAGGGATCGCCTACAGTCTTCCCCACTGGCAGC GTTGCTGACAGGGATCGCCTATAGTCTTCCCCACTGGCAGC < 41bp 0.539459758695537 0.771155599033397 0.24414751 0.2737706 prediction 0.46339168067572 Functional Gain - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38350541 chr3:38350542 synonymous SNV . 0 22 hm1A_associated_SNPs_19070 0 0 0 3 38350534 38350555 mRNA hsa-miR-491-5p SLC22A14 miRanda miRanda
2192 chrX 47248075 47248075 1 + A C rs748264007 47248077 + 47248057 47248097 41 TCAGAGCAGGGGGCCTGAAGAATGCTTCTTCTGTTTACAAC TCAGAGCAGGGGGCCTGACGAATGCTTCTTCTGTTTACAAC < 41bp 0.501333875255299 0.732722825307096 0.10199851 0.11235589 prediction 0.462777900103593 Functional Gain - SNORA11C ENSG00000221459 ncRNA_exonic Human snoRNA chrX:47248077 chrX:47248075 . . 0 19 hm1A_associated_SNPs_19097 0 0 0 5 47248074 47248095 mRNA hsa-miR-30a SNORA11C miRanda miRanda
2192 chrX 47248075 47248075 1 + A C rs748264007 47248077 + 47248057 47248097 41 TCAGAGCAGGGGGCCTGAAGAATGCTTCTTCTGTTTACAAC TCAGAGCAGGGGGCCTGACGAATGCTTCTTCTGTTTACAAC < 41bp 0.501333875255299 0.732722825307096 0.10199851 0.11235589 prediction 0.462777900103593 Functional Gain - SNORA11C ENSG00000221459 ncRNA_exonic Human snoRNA chrX:47248077 chrX:47248075 . . 0 19 hm1A_associated_SNPs_19097 0 0 0 5 47248070 47248095 mRNA hsa-miR-30c SNORA11C miRanda miRanda
2192 chrX 47248075 47248075 1 + A C rs748264007 47248077 + 47248057 47248097 41 TCAGAGCAGGGGGCCTGAAGAATGCTTCTTCTGTTTACAAC TCAGAGCAGGGGGCCTGACGAATGCTTCTTCTGTTTACAAC < 41bp 0.501333875255299 0.732722825307096 0.10199851 0.11235589 prediction 0.462777900103593 Functional Gain - SNORA11C ENSG00000221459 ncRNA_exonic Human snoRNA chrX:47248077 chrX:47248075 . . 0 19 hm1A_associated_SNPs_19097 0 0 0 5 47248074 47248095 mRNA hsa-miR-30d SNORA11C miRanda miRanda
2192 chrX 47248075 47248075 1 + A C rs748264007 47248077 + 47248057 47248097 41 TCAGAGCAGGGGGCCTGAAGAATGCTTCTTCTGTTTACAAC TCAGAGCAGGGGGCCTGACGAATGCTTCTTCTGTTTACAAC < 41bp 0.501333875255299 0.732722825307096 0.10199851 0.11235589 prediction 0.462777900103593 Functional Gain - SNORA11C ENSG00000221459 ncRNA_exonic Human snoRNA chrX:47248077 chrX:47248075 . . 0 19 hm1A_associated_SNPs_19097 0 0 0 5 47248074 47248095 mRNA hsa-miR-30b SNORA11C miRanda miRanda
2192 chrX 47248075 47248075 1 + A C rs748264007 47248077 + 47248057 47248097 41 TCAGAGCAGGGGGCCTGAAGAATGCTTCTTCTGTTTACAAC TCAGAGCAGGGGGCCTGACGAATGCTTCTTCTGTTTACAAC < 41bp 0.501333875255299 0.732722825307096 0.10199851 0.11235589 prediction 0.462777900103593 Functional Gain - SNORA11C ENSG00000221459 ncRNA_exonic Human snoRNA chrX:47248077 chrX:47248075 . . 0 19 hm1A_associated_SNPs_19097 0 0 0 5 47248074 47248095 mRNA hsa-miR-30e SNORA11C miRanda miRanda
2192 chr5 134117705 134117705 1 + A C UCEC 134117707 + 134117687 134117727 41 AACCAGTTGATCATGGAAAAATTGAGTATGAGCCATTTAGG AACCAGTTGATCATGGAACAATTGAGTATGAGCCATTTAGG < 41bp 0.482978797255178 0.731164172903906 0.0785785 0.12449366 prediction 0.462328345807812 Functional Gain - DDX46 ENSG00000145833 CDS Human protein_coding chr5:134117707 chr5:134117705 nonsynonymous SNV 1.000 1 19 hm1A_associated_SNPs_19120 0 0 1 1 134117700 134117721 mRNA hsa-miR-24 DDX46 miRanda miRanda
2192 chr19 16268097 16268097 1 + G T UCEC 16268096 + 16268076 16268116 41 GATGAACAGAATAACCACCAAGGAAGCCACTTCCTCCTGCC GATGAACAGAATAACCACCAATGAAGCCACTTCCTCCTGCC < 41bp 0.529762425018985 0.760669621124305 0.41329488 0.55509573 prediction 0.46181439221064 Functional Gain - HSH2D ENSG00000196684 CDS Human protein_coding chr19:16268096 chr19:16268097 nonsynonymous SNV 0.001 0 22 hm1A_associated_SNPs_19153 0 0 0 11 16268087 16268108 mRNA hsa-miR-302a HSH2D miRanda miRanda
2192 chr19 16268097 16268097 1 + G T UCEC 16268096 + 16268076 16268116 41 GATGAACAGAATAACCACCAAGGAAGCCACTTCCTCCTGCC GATGAACAGAATAACCACCAATGAAGCCACTTCCTCCTGCC < 41bp 0.529762425018985 0.760669621124305 0.41329488 0.55509573 prediction 0.46181439221064 Functional Gain - HSH2D ENSG00000196684 CDS Human protein_coding chr19:16268096 chr19:16268097 nonsynonymous SNV 0.001 0 22 hm1A_associated_SNPs_19153 0 0 0 11 16268083 16268108 mRNA hsa-miR-302b HSH2D miRanda miRanda
2192 chr19 16268097 16268097 1 + G T UCEC 16268096 + 16268076 16268116 41 GATGAACAGAATAACCACCAAGGAAGCCACTTCCTCCTGCC GATGAACAGAATAACCACCAATGAAGCCACTTCCTCCTGCC < 41bp 0.529762425018985 0.760669621124305 0.41329488 0.55509573 prediction 0.46181439221064 Functional Gain - HSH2D ENSG00000196684 CDS Human protein_coding chr19:16268096 chr19:16268097 nonsynonymous SNV 0.001 0 22 hm1A_associated_SNPs_19153 0 0 0 11 16268085 16268108 mRNA hsa-miR-302c HSH2D miRanda miRanda
2192 chr19 16268097 16268097 1 + G T UCEC 16268096 + 16268076 16268116 41 GATGAACAGAATAACCACCAAGGAAGCCACTTCCTCCTGCC GATGAACAGAATAACCACCAATGAAGCCACTTCCTCCTGCC < 41bp 0.529762425018985 0.760669621124305 0.41329488 0.55509573 prediction 0.46181439221064 Functional Gain - HSH2D ENSG00000196684 CDS Human protein_coding chr19:16268096 chr19:16268097 nonsynonymous SNV 0.001 0 22 hm1A_associated_SNPs_19153 0 0 0 11 16268085 16268108 mRNA hsa-miR-302d HSH2D miRanda miRanda
2192 chr19 16268097 16268097 1 + G T UCEC 16268096 + 16268076 16268116 41 GATGAACAGAATAACCACCAAGGAAGCCACTTCCTCCTGCC GATGAACAGAATAACCACCAATGAAGCCACTTCCTCCTGCC < 41bp 0.529762425018985 0.760669621124305 0.41329488 0.55509573 prediction 0.46181439221064 Functional Gain - HSH2D ENSG00000196684 CDS Human protein_coding chr19:16268096 chr19:16268097 nonsynonymous SNV 0.001 0 22 hm1A_associated_SNPs_19153 0 0 0 11 16268087 16268108 mRNA hsa-miR-373 HSH2D miRanda miRanda
2192 chr19 16268097 16268097 1 + G T UCEC 16268096 + 16268076 16268116 41 GATGAACAGAATAACCACCAAGGAAGCCACTTCCTCCTGCC GATGAACAGAATAACCACCAATGAAGCCACTTCCTCCTGCC < 41bp 0.529762425018985 0.760669621124305 0.41329488 0.55509573 prediction 0.46181439221064 Functional Gain - HSH2D ENSG00000196684 CDS Human protein_coding chr19:16268096 chr19:16268097 nonsynonymous SNV 0.001 0 22 hm1A_associated_SNPs_19153 0 0 0 11 16268087 16268108 mRNA hsa-miR-520e HSH2D miRanda miRanda
2192 chr19 16268097 16268097 1 + G T UCEC 16268096 + 16268076 16268116 41 GATGAACAGAATAACCACCAAGGAAGCCACTTCCTCCTGCC GATGAACAGAATAACCACCAATGAAGCCACTTCCTCCTGCC < 41bp 0.529762425018985 0.760669621124305 0.41329488 0.55509573 prediction 0.46181439221064 Functional Gain - HSH2D ENSG00000196684 CDS Human protein_coding chr19:16268096 chr19:16268097 nonsynonymous SNV 0.001 0 22 hm1A_associated_SNPs_19153 0 0 0 11 16268088 16268108 mRNA hsa-miR-520a-3p HSH2D miRanda miRanda
2192 chr19 16268097 16268097 1 + G T UCEC 16268096 + 16268076 16268116 41 GATGAACAGAATAACCACCAAGGAAGCCACTTCCTCCTGCC GATGAACAGAATAACCACCAATGAAGCCACTTCCTCCTGCC < 41bp 0.529762425018985 0.760669621124305 0.41329488 0.55509573 prediction 0.46181439221064 Functional Gain - HSH2D ENSG00000196684 CDS Human protein_coding chr19:16268096 chr19:16268097 nonsynonymous SNV 0.001 0 22 hm1A_associated_SNPs_19153 0 0 0 11 16268087 16268108 mRNA hsa-miR-520b HSH2D miRanda miRanda
2192 chr19 16268097 16268097 1 + G T UCEC 16268096 + 16268076 16268116 41 GATGAACAGAATAACCACCAAGGAAGCCACTTCCTCCTGCC GATGAACAGAATAACCACCAATGAAGCCACTTCCTCCTGCC < 41bp 0.529762425018985 0.760669621124305 0.41329488 0.55509573 prediction 0.46181439221064 Functional Gain - HSH2D ENSG00000196684 CDS Human protein_coding chr19:16268096 chr19:16268097 nonsynonymous SNV 0.001 0 22 hm1A_associated_SNPs_19153 0 0 0 11 16268086 16268108 mRNA hsa-miR-520c-3p HSH2D miRanda miRanda
2192 chr19 16268097 16268097 1 + G T UCEC 16268096 + 16268076 16268116 41 GATGAACAGAATAACCACCAAGGAAGCCACTTCCTCCTGCC GATGAACAGAATAACCACCAATGAAGCCACTTCCTCCTGCC < 41bp 0.529762425018985 0.760669621124305 0.41329488 0.55509573 prediction 0.46181439221064 Functional Gain - HSH2D ENSG00000196684 CDS Human protein_coding chr19:16268096 chr19:16268097 nonsynonymous SNV 0.001 0 22 hm1A_associated_SNPs_19153 0 0 0 11 16268088 16268108 mRNA hsa-miR-520d-3p HSH2D miRanda miRanda
2192 chr19 16268097 16268097 1 + G T UCEC 16268096 + 16268076 16268116 41 GATGAACAGAATAACCACCAAGGAAGCCACTTCCTCCTGCC GATGAACAGAATAACCACCAATGAAGCCACTTCCTCCTGCC < 41bp 0.529762425018985 0.760669621124305 0.41329488 0.55509573 prediction 0.46181439221064 Functional Gain - HSH2D ENSG00000196684 CDS Human protein_coding chr19:16268096 chr19:16268097 nonsynonymous SNV 0.001 0 22 hm1A_associated_SNPs_19153 0 0 0 11 16268091 16268108 mRNA hsa-miR-302e HSH2D miRanda miRanda
2192 chr9 36198991 36198991 1 + A C CESC 36198993 + 36198973 36199013 41 AAGGAAAGTAATGGTCCAACAGACAGTTATGCAGCTATTTC AAGGAAAGTAATGGTCCACCAGACAGTTATGCAGCTATTTC < 41bp 0.520844028262947 0.751569481284658 0.10433513 0.101302415 prediction 0.461450906043422 Functional Gain - CLTA ENSG00000122705 CDS Human protein_coding chr9:36198993 chr9:36198991 nonsynonymous SNV 1.000 1 19 hm1A_associated_SNPs_19169 0 0 1 1 36198988 36199009 mRNA hsa-miR-22 CLTA miRanda miRanda
2192 chr10 74666367 74666367 1 + T C LUSC 74666369 + 74666349 74666389 41 TGCAGATGAAAATGAATGTGAGCAAAACAACGGTGGCTGCA TGCAGATGAAAATGAATGCGAGCAAAACAACGGTGGCTGCA < 41bp 0.560635372472468 0.791243822231644 0.09326702 0.13264793 prediction 0.461216899518352 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74666369 chr10:74666367 synonymous SNV . 0 19 hm1A_associated_SNPs_19176 0 0 0 7 74666354 74666370 mRNA hsa-miR-23a OIT3 miRanda miRanda
2192 chr10 74666367 74666367 1 + T C LUSC 74666369 + 74666349 74666389 41 TGCAGATGAAAATGAATGTGAGCAAAACAACGGTGGCTGCA TGCAGATGAAAATGAATGCGAGCAAAACAACGGTGGCTGCA < 41bp 0.560635372472468 0.791243822231644 0.09326702 0.13264793 prediction 0.461216899518352 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74666369 chr10:74666367 synonymous SNV . 0 19 hm1A_associated_SNPs_19176 0 0 0 7 74666354 74666368 mRNA hsa-miR-181a OIT3 miRanda miRanda
2192 chr10 74666367 74666367 1 + T C LUSC 74666369 + 74666349 74666389 41 TGCAGATGAAAATGAATGTGAGCAAAACAACGGTGGCTGCA TGCAGATGAAAATGAATGCGAGCAAAACAACGGTGGCTGCA < 41bp 0.560635372472468 0.791243822231644 0.09326702 0.13264793 prediction 0.461216899518352 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74666369 chr10:74666367 synonymous SNV . 0 19 hm1A_associated_SNPs_19176 0 0 0 7 74666354 74666368 mRNA hsa-miR-181b OIT3 miRanda miRanda
2192 chr10 74666367 74666367 1 + T C LUSC 74666369 + 74666349 74666389 41 TGCAGATGAAAATGAATGTGAGCAAAACAACGGTGGCTGCA TGCAGATGAAAATGAATGCGAGCAAAACAACGGTGGCTGCA < 41bp 0.560635372472468 0.791243822231644 0.09326702 0.13264793 prediction 0.461216899518352 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74666369 chr10:74666367 synonymous SNV . 0 19 hm1A_associated_SNPs_19176 0 0 0 7 74666354 74666368 mRNA hsa-miR-181c OIT3 miRanda miRanda
2192 chr10 74666367 74666367 1 + T C LUSC 74666369 + 74666349 74666389 41 TGCAGATGAAAATGAATGTGAGCAAAACAACGGTGGCTGCA TGCAGATGAAAATGAATGCGAGCAAAACAACGGTGGCTGCA < 41bp 0.560635372472468 0.791243822231644 0.09326702 0.13264793 prediction 0.461216899518352 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74666369 chr10:74666367 synonymous SNV . 0 19 hm1A_associated_SNPs_19176 0 0 0 7 74666354 74666370 mRNA hsa-miR-23b OIT3 miRanda miRanda
2192 chr10 74666367 74666367 1 + T C LUSC 74666369 + 74666349 74666389 41 TGCAGATGAAAATGAATGTGAGCAAAACAACGGTGGCTGCA TGCAGATGAAAATGAATGCGAGCAAAACAACGGTGGCTGCA < 41bp 0.560635372472468 0.791243822231644 0.09326702 0.13264793 prediction 0.461216899518352 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74666369 chr10:74666367 synonymous SNV . 0 19 hm1A_associated_SNPs_19176 0 0 0 7 74666354 74666371 mRNA hsa-miR-136 OIT3 miRanda miRanda
2192 chr10 74666367 74666367 1 + T C LUSC 74666369 + 74666349 74666389 41 TGCAGATGAAAATGAATGTGAGCAAAACAACGGTGGCTGCA TGCAGATGAAAATGAATGCGAGCAAAACAACGGTGGCTGCA < 41bp 0.560635372472468 0.791243822231644 0.09326702 0.13264793 prediction 0.461216899518352 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74666369 chr10:74666367 synonymous SNV . 0 19 hm1A_associated_SNPs_19176 0 0 0 7 74666354 74666368 mRNA hsa-miR-181d OIT3 miRanda miRanda
2192 chr5 68715934 68715934 1 + G C SKCM 68715936 + 68715916 68715956 41 GCGTTGGTGGATTGGGCAGTATGTATGGGGGCTATTACTAC GCGTTGGTGGATTGGGCACTATGTATGGGGGCTATTACTAC < 41bp 0.49092761738223 0.730312966609522 0.2545035 0.23323882 prediction 0.460625933219045 Functional Gain - MARVELD2 ENSG00000152939 CDS Human protein_coding chr5:68715936 chr5:68715934 nonsynonymous SNV 0.025 0 19 hm1A_associated_SNPs_19205 0 0 1 3 68715918 68715937 mRNA hsa-miR-200b MARVELD2 miRanda miRanda
2192 chr5 68715934 68715934 1 + G C SKCM 68715936 + 68715916 68715956 41 GCGTTGGTGGATTGGGCAGTATGTATGGGGGCTATTACTAC GCGTTGGTGGATTGGGCACTATGTATGGGGGCTATTACTAC < 41bp 0.49092761738223 0.730312966609522 0.2545035 0.23323882 prediction 0.460625933219045 Functional Gain - MARVELD2 ENSG00000152939 CDS Human protein_coding chr5:68715936 chr5:68715934 nonsynonymous SNV 0.025 0 19 hm1A_associated_SNPs_19205 0 0 1 3 68715915 68715937 mRNA hsa-miR-200c MARVELD2 miRanda miRanda
2192 chr5 68715934 68715934 1 + G C SKCM 68715936 + 68715916 68715956 41 GCGTTGGTGGATTGGGCAGTATGTATGGGGGCTATTACTAC GCGTTGGTGGATTGGGCACTATGTATGGGGGCTATTACTAC < 41bp 0.49092761738223 0.730312966609522 0.2545035 0.23323882 prediction 0.460625933219045 Functional Gain - MARVELD2 ENSG00000152939 CDS Human protein_coding chr5:68715936 chr5:68715934 nonsynonymous SNV 0.025 0 19 hm1A_associated_SNPs_19205 0 0 1 3 68715918 68715937 mRNA hsa-miR-429 MARVELD2 miRanda miRanda
2192 chr3 52574522 52574522 1 + T C UCEC 52574524 + 52574504 52574544 41 CTGAACTTCAGCAGTCAATAAAGTCAATATGAATTTTTACT CTGAACTTCAGCAGTCAACAAAGTCAATATGAATTTTTACT < 41bp 0.418376505252496 0.730242414365422 0.057059556 0.07800302 prediction 0.460484828730845 Functional Gain - SMIM4 ENSG00000168273 CDS Human protein_coding chr3:52574524 chr3:52574522 nonsynonymous SNV 0.995 0 19 hm1A_associated_SNPs_19212 0 0 1 1 52574502 52574522 mRNA hsa-miR-134 LOC440957 miRanda miRanda
2192 chr14 74364814 74364814 1 + T C COAD 74364816 + 74364796 74364836 41 CTTAGTGTTTGTACAGGATGAGGCAGAAGATTCAGGGAATG CTTAGTGTTTGTACAGGACGAGGCAGAAGATTCAGGGAATG < 41bp 0.468641058261365 0.730234596511691 0.12804398 0.22648013 prediction 0.460469193023383 Functional Gain - ZNF410 ENSG00000119725 CDS Human protein_coding chr14:74364816 chr14:74364814 synonymous SNV . 0 19 hm1A_associated_SNPs_19213 0 0 1 4 74364811 74364833 mRNA hsa-miR-125b ZNF410 miRanda miRanda
2192 chr14 74364814 74364814 1 + T C COAD 74364816 + 74364796 74364836 41 CTTAGTGTTTGTACAGGATGAGGCAGAAGATTCAGGGAATG CTTAGTGTTTGTACAGGACGAGGCAGAAGATTCAGGGAATG < 41bp 0.468641058261365 0.730234596511691 0.12804398 0.22648013 prediction 0.460469193023383 Functional Gain - ZNF410 ENSG00000119725 CDS Human protein_coding chr14:74364816 chr14:74364814 synonymous SNV . 0 19 hm1A_associated_SNPs_19213 0 0 1 4 74364806 74364833 mRNA hsa-miR-125a-5p ZNF410 miRanda miRanda
2192 chr14 74364814 74364814 1 + T C COAD 74364816 + 74364796 74364836 41 CTTAGTGTTTGTACAGGATGAGGCAGAAGATTCAGGGAATG CTTAGTGTTTGTACAGGACGAGGCAGAAGATTCAGGGAATG < 41bp 0.468641058261365 0.730234596511691 0.12804398 0.22648013 prediction 0.460469193023383 Functional Gain - ZNF410 ENSG00000119725 CDS Human protein_coding chr14:74364816 chr14:74364814 synonymous SNV . 0 19 hm1A_associated_SNPs_19213 0 0 1 4 74364804 74364824 mRNA hsa-miR-346 ZNF410 miRanda miRanda
2192 chr14 74364814 74364814 1 + T C COAD 74364816 + 74364796 74364836 41 CTTAGTGTTTGTACAGGATGAGGCAGAAGATTCAGGGAATG CTTAGTGTTTGTACAGGACGAGGCAGAAGATTCAGGGAATG < 41bp 0.468641058261365 0.730234596511691 0.12804398 0.22648013 prediction 0.460469193023383 Functional Gain - ZNF410 ENSG00000119725 CDS Human protein_coding chr14:74364816 chr14:74364814 synonymous SNV . 0 19 hm1A_associated_SNPs_19213 0 0 1 4 74364803 74364824 mRNA hsa-miR-544 ZNF410 miRanda miRanda
2192 chr19 55044960 55044960 1 + A C UCEC 55044962 + 55044942 55044982 41 CTCTTCCAGGTGCTCAGGACAAGTTCTCCCTGTCAGCCTGG CTCTTCCAGGTGCTCAGGCCAAGTTCTCCCTGTCAGCCTGG < 41bp 0.503932279918257 0.734157119140751 0.3443048 0.35401013 prediction 0.460449678444988 Functional Gain - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55044962 chr19:55044960 nonsynonymous SNV 0.000 0 19 hm1A_associated_SNPs_19216 0 0 0 2 55044952 55044970 mRNA hsa-miR-146a KIR3DX1 miRanda miRanda
2192 chr19 55044960 55044960 1 + A C UCEC 55044962 + 55044942 55044982 41 CTCTTCCAGGTGCTCAGGACAAGTTCTCCCTGTCAGCCTGG CTCTTCCAGGTGCTCAGGCCAAGTTCTCCCTGTCAGCCTGG < 41bp 0.503932279918257 0.734157119140751 0.3443048 0.35401013 prediction 0.460449678444988 Functional Gain - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55044962 chr19:55044960 nonsynonymous SNV 0.000 0 19 hm1A_associated_SNPs_19216 0 0 0 2 55044951 55044970 mRNA hsa-miR-146b-5p KIR3DX1 miRanda miRanda
2192 chr1 110775546 110775546 1 + C T OV 110775545 + 110775525 110775565 41 AAACACAGAGACCTGCCAAGACGCCCTCTCGTCCAACTATG AAACACAGAGACCTGCCAAGATGCCCTCTCGTCCAACTATG < 41bp 0.539843322291689 0.769924951793853 0.17919683 0.14980605 prediction 0.460163259004329 Functional Gain - KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110775545 chr1:110775546 synonymous SNV . 0 22 hm1A_associated_SNPs_19227 0 0 0 1 110775526 110775547 mRNA hsa-miR-431 KCNC4 miRanda miRanda
2192 chr1 22356917 22356917 1 + C T rs141233007 22356916 + 22356896 22356936 41 GAGCCAGAAGTTGTCCTACTACCTGCTTTCCAGGTCCAGAT GAGCCAGAAGTTGTCCTACTATCTGCTTTCCAGGTCCAGAT < 41bp 0.498057971716642 0.729776117812994 0.34381062 0.32176977 prediction 0.459552235625988 Functional Gain - LINC00339 ENSG00000218510 ncRNA_exonic Human lincRNA chr1:22356916 chr1:22356917 . . 0 22 hm1A_associated_SNPs_19256 0 0 1 2 22356898 22356920 mRNA hsa-miR-196a HSPC157 miRanda miRanda
2192 chr1 22356917 22356917 1 + C T rs141233007 22356916 + 22356896 22356936 41 GAGCCAGAAGTTGTCCTACTACCTGCTTTCCAGGTCCAGAT GAGCCAGAAGTTGTCCTACTATCTGCTTTCCAGGTCCAGAT < 41bp 0.498057971716642 0.729776117812994 0.34381062 0.32176977 prediction 0.459552235625988 Functional Gain - LINC00339 ENSG00000218510 ncRNA_exonic Human lincRNA chr1:22356916 chr1:22356917 . . 0 22 hm1A_associated_SNPs_19256 0 0 1 2 22356899 22356920 mRNA hsa-miR-196b HSPC157 miRanda miRanda
2192 chr1 38483358 38483358 1 + A C PAAD 38483360 + 38483340 38483380 41 TGACTACCGTAAAAAACAAGAATACCTCAAAGCTCTTCGGA TGACTACCGTAAAAAACACGAATACCTCAAAGCTCTTCGGA < 41bp 0.539138716657403 0.76880931192634 0.15996149 0.116553426 prediction 0.459341190537875 Functional Gain - UTP11 ENSG00000183520 CDS Human protein_coding chr1:38483360 chr1:38483358 nonsynonymous SNV 0.966 3 19 hm1A_associated_SNPs_19263 0 0 1 1 38483349 38483368 mRNA hsa-miR-202 UTP11L miRanda miRanda
2192 chr18 21740003 21740003 1 + A C rs149439567 21740005 + 21739985 21740025 41 TAACCGTGACTACTGCTCACAAACGTCGCAAAGCAGAAACT TAACCGTGACTACTGCTCCCAAACGTCGCAAAGCAGAAACT < 41bp 0.512983191609726 0.742629640180446 0.22572902 0.4594674 prediction 0.45929289714144 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21740005 chr18:21740003 nonsynonymous SNV 0.950 1 19 hm1A_associated_SNPs_19264 0 0 1 1 21739996 21740017 mRNA hsa-miR-450a CABYR miRanda miRanda
2192 chr1 150470061 150470061 1 + C T rs115720584 150470060 + 150470040 150470080 41 AAACTCCCACACTGTTTTCTACGAAGCTCTGGGAACAGTCA AAACTCCCACACTGTTTTCTATGAAGCTCTGGGAACAGTCA < 41bp 0.493416958079353 0.729303018699493 0.27569482 0.25798374 prediction 0.458606037398987 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150470060 chr1:150470061 nonsynonymous SNV 0.934 2 22 hm1A_associated_SNPs_19298 1 0 1 1 150470061 150470086 mRNA hsa-miR-874 TARS2 miRanda miRanda
2192 chr3 184063777 184063777 1 + C T rs568264374 184063776 + 184063756 184063796 41 CTGAATGAAAGGCCAAGGCTACAGTACAGGGCCCCACCCCA CTGAATGAAAGGCCAAGGCTATAGTACAGGGCCCCACCCCA < 41bp 0.475776864127026 0.728997136973457 0.25329518 0.25870293 prediction 0.457994273946913 Functional Gain - FAM131A ENSG00000175182 UTR3 Human protein_coding chr3:184063776 chr3:184063777 . . 0 22 hm1A_associated_SNPs_19331 0 0 0 1 184063762 184063786 mRNA hsa-miR-486-5p FAM131A miRanda miRanda
2192 chr5 76332480 76332480 1 + G C HNSC 76332482 + 76332462 76332502 41 GCGGCTGTATCACAGACTGGATTTAGTTATGATGAAAATAC GCGGCTGTATCACAGACTCGATTTAGTTATGATGAAAATAC < 41bp 0.567076216604836 0.795772873106256 0.07655743 0.27547944 prediction 0.45739331300284 Functional Gain - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76332482 chr5:76332480 nonsynonymous SNV 0.999 4 19 hm1A_associated_SNPs_19359 0 0 1 1 76332461 76332483 mRNA hsa-miR-145 AGGF1 miRanda miRanda
2192 chr19 14518973 14518973 1 + A C rs375635650 14518975 + 14518955 14518995 41 CCAGCAGCTCCTGTGGCCACAGCAGCTTTGTACACGAAGAC CCAGCAGCTCCTGTGGCCCCAGCAGCTTTGTACACGAAGAC < 41bp 0.551666500694246 0.780061709187028 0.4846682 0.5458046 prediction 0.456790416985565 Functional Gain - ADGRE5 ENSG00000267379 ncRNA_intronic Human antisense chr19:14518975 chr19:14518973 . . 0 19 hm1A_associated_SNPs_19379 0 0 1 2 14518961 14518984 mRNA hsa-miR-93 CD97 miRanda miRanda
2192 chr19 14518973 14518973 1 + A C rs375635650 14518975 + 14518955 14518995 41 CCAGCAGCTCCTGTGGCCACAGCAGCTTTGTACACGAAGAC CCAGCAGCTCCTGTGGCCCCAGCAGCTTTGTACACGAAGAC < 41bp 0.551666500694246 0.780061709187028 0.4846682 0.5458046 prediction 0.456790416985565 Functional Gain - ADGRE5 ENSG00000267379 ncRNA_intronic Human antisense chr19:14518975 chr19:14518973 . . 0 19 hm1A_associated_SNPs_19379 0 0 1 2 14518959 14518983 mRNA hsa-miR-372 CD97 miRanda miRanda
2192 chr8 22107968 22107968 1 + C T BRCA 22107967 + 22107947 22107987 41 GGAGATGACAGTCCTGGGACACGTGAAGCACAAACTTGTAT GGAGATGACAGTCCTGGGACATGTGAAGCACAAACTTGTAT < 41bp 0.538001901347752 0.766362549319716 0.09192279 0.09918815 prediction 0.456721295943928 Functional Gain - POLR3D ENSG00000168495 CDS Human protein_coding chr8:22107967 chr8:22107968 synonymous SNV . 0 22 hm1A_associated_SNPs_19383 0 0 1 3 22107959 22107979 mRNA hsa-miR-218 POLR3D miRanda miRanda
2192 chr8 22107968 22107968 1 + C T BRCA 22107967 + 22107947 22107987 41 GGAGATGACAGTCCTGGGACACGTGAAGCACAAACTTGTAT GGAGATGACAGTCCTGGGACATGTGAAGCACAAACTTGTAT < 41bp 0.538001901347752 0.766362549319716 0.09192279 0.09918815 prediction 0.456721295943928 Functional Gain - POLR3D ENSG00000168495 CDS Human protein_coding chr8:22107967 chr8:22107968 synonymous SNV . 0 22 hm1A_associated_SNPs_19383 0 0 1 3 22107968 22107988 mRNA hsa-miR-381 POLR3D miRanda miRanda
2192 chr8 22107968 22107968 1 + C T BRCA 22107967 + 22107947 22107987 41 GGAGATGACAGTCCTGGGACACGTGAAGCACAAACTTGTAT GGAGATGACAGTCCTGGGACATGTGAAGCACAAACTTGTAT < 41bp 0.538001901347752 0.766362549319716 0.09192279 0.09918815 prediction 0.456721295943928 Functional Gain - POLR3D ENSG00000168495 CDS Human protein_coding chr8:22107967 chr8:22107968 synonymous SNV . 0 22 hm1A_associated_SNPs_19383 0 0 1 3 22107967 22107988 mRNA hsa-miR-300 POLR3D miRanda miRanda
2192 chr1 179347841 179347841 1 + A C UCEC 179347843 + 179347823 179347863 41 GAAGGCAGTTTGTCCCCCACATTTGGCCCGTTCATTACAGT GAAGGCAGTTTGTCCCCCCCATTTGGCCCGTTCATTACAGT < 41bp 0.464783864022837 0.728330015444706 0.16827855 0.8063284 prediction 0.456660030889412 Functional Gain - AXDND1 ENSG00000162779 CDS Human protein_coding chr1:179347843 chr1:179347841 synonymous SNV . 0 19 hm1A_associated_SNPs_19388 0 0 0 1 179347825 179347845 mRNA hsa-miR-299-3p C1orf125 miRanda miRanda
2192 chr10 89474515 89474515 1 + T C UCEC 89474517 + 89474497 89474537 41 TGCAGGATTTACAGGTATTGATTCTGATTATGAGAAACCTG TGCAGGATTTACAGGTATCGATTCTGATTATGAGAAACCTG < 41bp 0.410528240768523 0.728307041606307 0.0646953 0.25357223 prediction 0.456614083212613 Functional Gain - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89474517 chr10:89474515 synonymous SNV . 0 19 hm1A_associated_SNPs_19392 0 0 1 3 89474505 89474526 mRNA hsa-miR-361-5p PAPSS2 miRanda miRanda
2192 chr10 89474515 89474515 1 + T C UCEC 89474517 + 89474497 89474537 41 TGCAGGATTTACAGGTATTGATTCTGATTATGAGAAACCTG TGCAGGATTTACAGGTATCGATTCTGATTATGAGAAACCTG < 41bp 0.410528240768523 0.728307041606307 0.0646953 0.25357223 prediction 0.456614083212613 Functional Gain - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89474517 chr10:89474515 synonymous SNV . 0 19 hm1A_associated_SNPs_19392 0 0 1 3 89474503 89474526 mRNA hsa-miR-383 PAPSS2 miRanda miRanda
2192 chr10 89474515 89474515 1 + T C UCEC 89474517 + 89474497 89474537 41 TGCAGGATTTACAGGTATTGATTCTGATTATGAGAAACCTG TGCAGGATTTACAGGTATCGATTCTGATTATGAGAAACCTG < 41bp 0.410528240768523 0.728307041606307 0.0646953 0.25357223 prediction 0.456614083212613 Functional Gain - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89474517 chr10:89474515 synonymous SNV . 0 19 hm1A_associated_SNPs_19392 0 0 1 3 89474502 89474515 mRNA hsa-miR-875-5p PAPSS2 miRanda miRanda
2192 chr1 205561299 205561299 1 + T C SKCM 205561301 + 205561281 205561321 41 TGACGTTCCTGGTGCTGCTTATTTTCTCCTACAACGTCGTC TGACGTTCCTGGTGCTGCCTATTTTCTCCTACAACGTCGTC < 41bp 0.61934132498077 0.847499994955565 0.48174953 0.53179437 prediction 0.456317339949589 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561301 chr1:205561299 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_19409 0 0 0 6 205561279 205561300 mRNA hsa-miR-15a MFSD4 miRanda miRanda
2192 chr1 205561299 205561299 1 + T C SKCM 205561301 + 205561281 205561321 41 TGACGTTCCTGGTGCTGCTTATTTTCTCCTACAACGTCGTC TGACGTTCCTGGTGCTGCCTATTTTCTCCTACAACGTCGTC < 41bp 0.61934132498077 0.847499994955565 0.48174953 0.53179437 prediction 0.456317339949589 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561301 chr1:205561299 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_19409 0 0 0 6 205561278 205561300 mRNA hsa-miR-16 MFSD4 miRanda miRanda
2192 chr1 205561299 205561299 1 + T C SKCM 205561301 + 205561281 205561321 41 TGACGTTCCTGGTGCTGCTTATTTTCTCCTACAACGTCGTC TGACGTTCCTGGTGCTGCCTATTTTCTCCTACAACGTCGTC < 41bp 0.61934132498077 0.847499994955565 0.48174953 0.53179437 prediction 0.456317339949589 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561301 chr1:205561299 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_19409 0 0 0 6 205561279 205561300 mRNA hsa-miR-15b MFSD4 miRanda miRanda
2192 chr1 205561299 205561299 1 + T C SKCM 205561301 + 205561281 205561321 41 TGACGTTCCTGGTGCTGCTTATTTTCTCCTACAACGTCGTC TGACGTTCCTGGTGCTGCCTATTTTCTCCTACAACGTCGTC < 41bp 0.61934132498077 0.847499994955565 0.48174953 0.53179437 prediction 0.456317339949589 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561301 chr1:205561299 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_19409 0 0 0 6 205561279 205561300 mRNA hsa-miR-195 MFSD4 miRanda miRanda
2192 chr1 205561299 205561299 1 + T C SKCM 205561301 + 205561281 205561321 41 TGACGTTCCTGGTGCTGCTTATTTTCTCCTACAACGTCGTC TGACGTTCCTGGTGCTGCCTATTTTCTCCTACAACGTCGTC < 41bp 0.61934132498077 0.847499994955565 0.48174953 0.53179437 prediction 0.456317339949589 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561301 chr1:205561299 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_19409 0 0 0 6 205561279 205561300 mRNA hsa-miR-424 MFSD4 miRanda miRanda
2192 chr1 205561299 205561299 1 + T C SKCM 205561301 + 205561281 205561321 41 TGACGTTCCTGGTGCTGCTTATTTTCTCCTACAACGTCGTC TGACGTTCCTGGTGCTGCCTATTTTCTCCTACAACGTCGTC < 41bp 0.61934132498077 0.847499994955565 0.48174953 0.53179437 prediction 0.456317339949589 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561301 chr1:205561299 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_19409 0 0 0 6 205561280 205561300 mRNA hsa-miR-497 MFSD4 miRanda miRanda
2192 chr4 128564711 128564711 1 + A C UCEC 128564713 + 128564693 128564733 41 GGCTGGACAGTGTGCAGAAAAATGGAGAGCTGTTTTATTTG GGCTGGACAGTGTGCAGACAAATGGAGAGCTGTTTTATTTG < 41bp 0.486450481625306 0.727948588030554 0.20401374 0.19516686 prediction 0.455897176061107 Functional Gain - INTU ENSG00000164066 CDS Human protein_coding chr4:128564713 chr4:128564711 nonsynonymous SNV 0.987 3 19 hm1A_associated_SNPs_19432 0 0 1 3 128564706 128564727 mRNA hsa-miR-212 INTU miRanda miRanda
2192 chr4 128564711 128564711 1 + A C UCEC 128564713 + 128564693 128564733 41 GGCTGGACAGTGTGCAGAAAAATGGAGAGCTGTTTTATTTG GGCTGGACAGTGTGCAGACAAATGGAGAGCTGTTTTATTTG < 41bp 0.486450481625306 0.727948588030554 0.20401374 0.19516686 prediction 0.455897176061107 Functional Gain - INTU ENSG00000164066 CDS Human protein_coding chr4:128564713 chr4:128564711 nonsynonymous SNV 0.987 3 19 hm1A_associated_SNPs_19432 0 0 1 3 128564698 128564720 mRNA hsa-miR-136 INTU miRanda miRanda
2192 chr4 128564711 128564711 1 + A C UCEC 128564713 + 128564693 128564733 41 GGCTGGACAGTGTGCAGAAAAATGGAGAGCTGTTTTATTTG GGCTGGACAGTGTGCAGACAAATGGAGAGCTGTTTTATTTG < 41bp 0.486450481625306 0.727948588030554 0.20401374 0.19516686 prediction 0.455897176061107 Functional Gain - INTU ENSG00000164066 CDS Human protein_coding chr4:128564713 chr4:128564711 nonsynonymous SNV 0.987 3 19 hm1A_associated_SNPs_19432 0 0 1 3 128564688 128564712 mRNA hsa-miR-544 INTU miRanda miRanda
2192 chr22 21975895 21975895 1 + A C UCEC 21975897 + 21975877 21975917 41 ATACTCTAAGGACCGTAAAAAATTCTGTAAGAATGCTGAAG ATACTCTAAGGACCGTAACAAATTCTGTAAGAATGCTGAAG < 41bp 0.438878112709771 0.72780652829558 0.66734153 0.6388993 prediction 0.455613056591161 Functional Gain - UBE2L3 ENSG00000185651 CDS Human protein_coding chr22:21975897 chr22:21975895 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_19442 0 0 0 5 21975893 21975916 mRNA hsa-miR-103 UBE2L3 miRanda miRanda
2192 chr22 21975895 21975895 1 + A C UCEC 21975897 + 21975877 21975917 41 ATACTCTAAGGACCGTAAAAAATTCTGTAAGAATGCTGAAG ATACTCTAAGGACCGTAACAAATTCTGTAAGAATGCTGAAG < 41bp 0.438878112709771 0.72780652829558 0.66734153 0.6388993 prediction 0.455613056591161 Functional Gain - UBE2L3 ENSG00000185651 CDS Human protein_coding chr22:21975897 chr22:21975895 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_19442 0 0 0 5 21975893 21975916 mRNA hsa-miR-107 UBE2L3 miRanda miRanda
2192 chr22 21975895 21975895 1 + A C UCEC 21975897 + 21975877 21975917 41 ATACTCTAAGGACCGTAAAAAATTCTGTAAGAATGCTGAAG ATACTCTAAGGACCGTAACAAATTCTGTAAGAATGCTGAAG < 41bp 0.438878112709771 0.72780652829558 0.66734153 0.6388993 prediction 0.455613056591161 Functional Gain - UBE2L3 ENSG00000185651 CDS Human protein_coding chr22:21975897 chr22:21975895 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_19442 0 0 0 5 21975886 21975905 mRNA hsa-miR-186 UBE2L3 miRanda miRanda
2192 chr22 21975895 21975895 1 + A C UCEC 21975897 + 21975877 21975917 41 ATACTCTAAGGACCGTAAAAAATTCTGTAAGAATGCTGAAG ATACTCTAAGGACCGTAACAAATTCTGTAAGAATGCTGAAG < 41bp 0.438878112709771 0.72780652829558 0.66734153 0.6388993 prediction 0.455613056591161 Functional Gain - UBE2L3 ENSG00000185651 CDS Human protein_coding chr22:21975897 chr22:21975895 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_19442 0 0 0 5 21975891 21975916 mRNA hsa-miR-338-3p UBE2L3 miRanda miRanda
2192 chr22 21975895 21975895 1 + A C UCEC 21975897 + 21975877 21975917 41 ATACTCTAAGGACCGTAAAAAATTCTGTAAGAATGCTGAAG ATACTCTAAGGACCGTAACAAATTCTGTAAGAATGCTGAAG < 41bp 0.438878112709771 0.72780652829558 0.66734153 0.6388993 prediction 0.455613056591161 Functional Gain - UBE2L3 ENSG00000185651 CDS Human protein_coding chr22:21975897 chr22:21975895 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_19442 0 0 0 5 21975881 21975901 mRNA hsa-miR-590-3p UBE2L3 miRanda miRanda
2192 chr4 115585160 115585160 1 + A C UCEC 115585162 + 115585142 115585182 41 GATTTACAGGATCTCCAAAGATGGGTAAATGGTGCTAATGA GATTTACAGGATCTCCAACGATGGGTAAATGGTGCTAATGA < 41bp 0.484461905082041 0.727670537358735 0.12680373 0.25039485 prediction 0.45534107471747 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115585162 chr4:115585160 synonymous SNV . 0 19 hm1A_associated_SNPs_19455 0 0 1 5 115585157 115585178 mRNA hsa-miR-29a UGT8 miRanda miRanda
2192 chr4 115585160 115585160 1 + A C UCEC 115585162 + 115585142 115585182 41 GATTTACAGGATCTCCAAAGATGGGTAAATGGTGCTAATGA GATTTACAGGATCTCCAACGATGGGTAAATGGTGCTAATGA < 41bp 0.484461905082041 0.727670537358735 0.12680373 0.25039485 prediction 0.45534107471747 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115585162 chr4:115585160 synonymous SNV . 0 19 hm1A_associated_SNPs_19455 0 0 1 5 115585155 115585178 mRNA hsa-miR-29b UGT8 miRanda miRanda
2192 chr4 115585160 115585160 1 + A C UCEC 115585162 + 115585142 115585182 41 GATTTACAGGATCTCCAAAGATGGGTAAATGGTGCTAATGA GATTTACAGGATCTCCAACGATGGGTAAATGGTGCTAATGA < 41bp 0.484461905082041 0.727670537358735 0.12680373 0.25039485 prediction 0.45534107471747 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115585162 chr4:115585160 synonymous SNV . 0 19 hm1A_associated_SNPs_19455 0 0 1 5 115585157 115585178 mRNA hsa-miR-29c UGT8 miRanda miRanda
2192 chr4 115585160 115585160 1 + A C UCEC 115585162 + 115585142 115585182 41 GATTTACAGGATCTCCAAAGATGGGTAAATGGTGCTAATGA GATTTACAGGATCTCCAACGATGGGTAAATGGTGCTAATGA < 41bp 0.484461905082041 0.727670537358735 0.12680373 0.25039485 prediction 0.45534107471747 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115585162 chr4:115585160 synonymous SNV . 0 19 hm1A_associated_SNPs_19455 0 0 1 5 115585157 115585181 mRNA hsa-miR-363 UGT8 miRanda miRanda
2192 chr4 115585160 115585160 1 + A C UCEC 115585162 + 115585142 115585182 41 GATTTACAGGATCTCCAAAGATGGGTAAATGGTGCTAATGA GATTTACAGGATCTCCAACGATGGGTAAATGGTGCTAATGA < 41bp 0.484461905082041 0.727670537358735 0.12680373 0.25039485 prediction 0.45534107471747 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115585162 chr4:115585160 synonymous SNV . 0 19 hm1A_associated_SNPs_19455 0 0 1 5 115585157 115585181 mRNA hsa-miR-367 UGT8 miRanda miRanda
2192 chr1 86048778 86048778 1 + A C rs538855206 86048780 + 86048760 86048800 41 ACAAGGGAGAAGAGTGTCAGAATCAGAATCATGGAGAAAAT ACAAGGGAGAAGAGTGTCCGAATCAGAATCATGGAGAAAAT < 41bp 0.471443499511696 0.726891160758472 0.36692715 0.58860797 prediction 0.453782321516944 Functional Gain - CYR61 ENSG00000142871 UTR3 Human protein_coding chr1:86048780 chr1:86048778 . . 0 19 hm1A_associated_SNPs_19535 0 0 1 1 86048760 86048782 mRNA hsa-miR-544 CYR61 miRanda miRanda
2192 chr15 43822472 43822472 1 + G T PAAD 43822471 + 43822451 43822491 41 CACTCCCCCAGCTCCTTTAGAGAATGGCTACTGCTGAGTCC CACTCCCCCAGCTCCTTTAGATAATGGCTACTGCTGAGTCC < 41bp 0.529205942988092 0.755465497683864 0.33426195 0.286729 prediction 0.452519109391544 Functional Gain - MAP1A ENSG00000166963 UTR3 Human protein_coding chr15:43822471 chr15:43822472 . . 0 22 hm1A_associated_SNPs_19600 0 0 0 2 43822467 43822488 mRNA hsa-miR-27a MAP1A miRanda miRanda
2192 chr15 43822472 43822472 1 + G T PAAD 43822471 + 43822451 43822491 41 CACTCCCCCAGCTCCTTTAGAGAATGGCTACTGCTGAGTCC CACTCCCCCAGCTCCTTTAGATAATGGCTACTGCTGAGTCC < 41bp 0.529205942988092 0.755465497683864 0.33426195 0.286729 prediction 0.452519109391544 Functional Gain - MAP1A ENSG00000166963 UTR3 Human protein_coding chr15:43822471 chr15:43822472 . . 0 22 hm1A_associated_SNPs_19600 0 0 0 2 43822467 43822488 mRNA hsa-miR-27b MAP1A miRanda miRanda
2192 chr8 27660882 27660882 1 + C T UCEC 27660881 + 27660861 27660901 41 AAATAGCATTTTCTGACCCAACACCAGATGGCAAGTTATTT AAATAGCATTTTCTGACCCAATACCAGATGGCAAGTTATTT < 41bp 0.491899697507768 0.72620623264324 0.084527254 0.07948989 prediction 0.45241246528648 Functional Gain - ESCO2 ENSG00000171320 CDS Human protein_coding chr8:27660881 chr8:27660882 nonsynonymous SNV 1.000 5 22 hm1A_associated_SNPs_19608 0 0 1 1 27660882 27660890 mRNA hsa-miR-216b ESCO2 miRanda miRanda
2192 chr3 48302394 48302394 1 + T C UCEC 48302396 + 48302376 48302416 41 GGAACCTATACAAAGAAGTGATGCTGGAAAATCTCAGGAAT GGAACCTATACAAAGAAGCGATGCTGGAAAATCTCAGGAAT < 41bp 0.608840360490955 0.834973517624123 0.10223055 0.37737438 prediction 0.452266314266336 Functional Gain - ZNF589 ENSG00000164048 CDS Human protein_coding chr3:48302396 chr3:48302394 nonsynonymous SNV 0.858 3 19 hm1A_associated_SNPs_19614 0 0 1 1 48302383 48302403 mRNA hsa-miR-338-3p ZNF589 miRanda miRanda
2192 chr2 172952956 172952956 1 + G C LUAD 172952958 + 172952938 172952978 41 TACCCTTCAGCGCACCAAGAAGCTATGCAGCAACCCCAACT TACCCTTCAGCGCACCAACAAGCTATGCAGCAACCCCAACT < 41bp 0.527936012260211 0.753673103966832 0.13752711 0.10339829 prediction 0.451474183413241 Functional Gain - DLX1 ENSG00000144355 CDS Human protein_coding chr2:172952958 chr2:172952956 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_19661 0 0 0 1 172952946 172952967 mRNA hsa-miR-153 DLX1 miRanda miRanda
2192 chr11 10521749 10521749 1 + C T rs114718879 10521748 + 10521728 10521768 41 GAACCCACCCTACAGCTACTACCTGTACTACATGTATGCCA GAACCCACCCTACAGCTACTATCTGTACTACATGTATGCCA < 41bp 0.48083841822764 0.725535335560954 0.15922213 0.16268384 prediction 0.451070671121907 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10521748 chr11:10521749 synonymous SNV . 0 22 hm1A_associated_SNPs_19691 0 0 0 4 10521732 10521752 mRNA hsa-miR-196a AMPD3 miRanda miRanda
2192 chr11 10521749 10521749 1 + C T rs114718879 10521748 + 10521728 10521768 41 GAACCCACCCTACAGCTACTACCTGTACTACATGTATGCCA GAACCCACCCTACAGCTACTATCTGTACTACATGTATGCCA < 41bp 0.48083841822764 0.725535335560954 0.15922213 0.16268384 prediction 0.451070671121907 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10521748 chr11:10521749 synonymous SNV . 0 22 hm1A_associated_SNPs_19691 0 0 0 4 10521745 10521770 mRNA hsa-miR-182 AMPD3 miRanda miRanda
2192 chr11 10521749 10521749 1 + C T rs114718879 10521748 + 10521728 10521768 41 GAACCCACCCTACAGCTACTACCTGTACTACATGTATGCCA GAACCCACCCTACAGCTACTATCTGTACTACATGTATGCCA < 41bp 0.48083841822764 0.725535335560954 0.15922213 0.16268384 prediction 0.451070671121907 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10521748 chr11:10521749 synonymous SNV . 0 22 hm1A_associated_SNPs_19691 0 0 0 4 10521747 10521767 mRNA hsa-miR-222 AMPD3 miRanda miRanda
2192 chr11 10521749 10521749 1 + C T rs114718879 10521748 + 10521728 10521768 41 GAACCCACCCTACAGCTACTACCTGTACTACATGTATGCCA GAACCCACCCTACAGCTACTATCTGTACTACATGTATGCCA < 41bp 0.48083841822764 0.725535335560954 0.15922213 0.16268384 prediction 0.451070671121907 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10521748 chr11:10521749 synonymous SNV . 0 22 hm1A_associated_SNPs_19691 0 0 0 4 10521732 10521752 mRNA hsa-miR-196b AMPD3 miRanda miRanda
2192 chr3 136667405 136667405 1 + T C rs1048145 136667406 + 136667386 136667426 41 AAATTGTTGTTTCTAAATCTATATGAGAATTGACAATAAGT AAATTGTTGTTTCTAAATCCATATGAGAATTGACAATAAGT < 41bp 0.508112294361498 0.733250397731011 0.031111658 0.6844277 prediction 0.450276206739026 Functional Gain - NCK1 ENSG00000158092 UTR3 Human protein_coding chr3:136667406 chr3:136667405 . . 0 20 hm1A_associated_SNPs_19743 0 0 1 2 136667403 136667424 mRNA hsa-miR-219-5p NCK1 miRanda miRanda
2192 chr3 136667405 136667405 1 + T C rs1048145 136667406 + 136667386 136667426 41 AAATTGTTGTTTCTAAATCTATATGAGAATTGACAATAAGT AAATTGTTGTTTCTAAATCCATATGAGAATTGACAATAAGT < 41bp 0.508112294361498 0.733250397731011 0.031111658 0.6844277 prediction 0.450276206739026 Functional Gain - NCK1 ENSG00000158092 UTR3 Human protein_coding chr3:136667406 chr3:136667405 . . 0 20 hm1A_associated_SNPs_19743 0 0 1 2 136667400 136667420 mRNA hsa-miR-223 NCK1 miRanda miRanda
2192 chr6 28501830 28501830 1 + A C COAD 28501832 + 28501812 28501852 41 CATCCGTTGGAACTTTGAAAAGTTCCTGGTGGGGCCTGATG CATCCGTTGGAACTTTGACAAGTTCCTGGTGGGGCCTGATG < 41bp 0.473014319048904 0.725001860874576 0.14113268 0.15014258 prediction 0.450003721749152 Functional Gain - GPX5 ENSG00000224586 CDS Human protein_coding chr6:28501832 chr6:28501830 nonsynonymous SNV 0.998 4 19 hm1A_associated_SNPs_19764 0 0 0 1 28501818 28501840 mRNA hsa-miR-873 GPX5 miRanda miRanda
2192 chr11 3424874 3424874 1 + T C UCEC 3424876 + 3424856 3424896 41 TTCCTTCTCTCGTCTGTGTGATAACAGGTACCGCCTAGGAC TTCCTTCTCTCGTCTGTGCGATAACAGGTACCGCCTAGGAC < 41bp 0.464084463242563 0.724993747786279 0.28979832 0.5310779 prediction 0.449987495572558 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3424876 chr11:3424874 . . 0 19 hm1A_associated_SNPs_19767 0 0 0 1 3424856 3424877 mRNA hsa-miR-377 LOC650368 miRanda miRanda
2192 chr13 42803263 42803263 1 + T C rs17646069 42803265 + 42803245 42803285 41 TACCGAAAGTGGGTCATGTGAAGCGAATTCTCCAGGGAATT TACCGAAAGTGGGTCATGCGAAGCGAATTCTCCAGGGAATT < 41bp 0.559959881712077 0.784450408566833 0.17590123 0.23899698 prediction 0.448981053709512 Functional Gain - DGKH ENSG00000102780 CDS Human protein_coding chr13:42803265 chr13:42803263 nonsynonymous SNV 0.996 2 19 hm1A_associated_SNPs_19816 0 0 1 1 42803256 42803282 mRNA hsa-miR-125a-5p DGKH miRanda miRanda
2192 chr5 53839102 53839102 1 + C T UCEC 53839101 + 53839081 53839121 41 GCATTCAGGATCGCTGTAACACTATTTCTTTTGCCACTTTG GCATTCAGGATCGCTGTAACATTATTTCTTTTGCCACTTTG < 41bp 0.587728147742639 0.811886429199306 0.3718663 0.3434825 prediction 0.448316562913334 Functional Gain - SNX18 ENSG00000178996 CDS Human protein_coding chr5:53839101 chr5:53839102 nonsynonymous SNV 1.000 0 22 hm1A_associated_SNPs_19854 0 0 1 1 53839093 53839119 mRNA hsa-miR-301a SNX18 miRanda miRanda
2192 chr16 84182715 84182715 1 + C T rs61743547 84182714 + 84182694 84182734 41 GTCAGGTGGTCACTTCGCACACCCAAGAGAAGACAGGGAAG GTCAGGTGGTCACTTCGCACATCCAAGAGAAGACAGGGAAG < 41bp 0.532219508143205 0.756371778921529 0.18381983 0.17829055 prediction 0.448304541556648 Functional Gain - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84182714 chr16:84182715 synonymous SNV . 0 22 hm1A_associated_SNPs_19856 2 0 0 1 84182710 84182732 mRNA hsa-miR-339-5p LRRC50 miRanda miRanda
2192 chr9 100056271 100056271 1 + C T STAD 100056270 + 100056250 100056290 41 CTACTTTCTGTTCTTCTACAACGTGCTGCTGGGCCTGGGTG CTACTTTCTGTTCTTCTACAATGTGCTGCTGGGCCTGGGTG < 41bp 0.517369939511446 0.741389584809039 0.14813429 0.11280739 prediction 0.448039290595186 Functional Gain - LOC100499484;LOC100499484-C9ORF174 ENSG00000197816 CDS Human protein_coding chr9:100056270 chr9:100056271 synonymous SNV . 0 22 hm1A_associated_SNPs_19875 0 0 0 6 100056259 100056280 mRNA hsa-miR-15a KIAA1529 miRanda miRanda
2192 chr9 100056271 100056271 1 + C T STAD 100056270 + 100056250 100056290 41 CTACTTTCTGTTCTTCTACAACGTGCTGCTGGGCCTGGGTG CTACTTTCTGTTCTTCTACAATGTGCTGCTGGGCCTGGGTG < 41bp 0.517369939511446 0.741389584809039 0.14813429 0.11280739 prediction 0.448039290595186 Functional Gain - LOC100499484;LOC100499484-C9ORF174 ENSG00000197816 CDS Human protein_coding chr9:100056270 chr9:100056271 synonymous SNV . 0 22 hm1A_associated_SNPs_19875 0 0 0 6 100056259 100056280 mRNA hsa-miR-16 KIAA1529 miRanda miRanda
2192 chr9 100056271 100056271 1 + C T STAD 100056270 + 100056250 100056290 41 CTACTTTCTGTTCTTCTACAACGTGCTGCTGGGCCTGGGTG CTACTTTCTGTTCTTCTACAATGTGCTGCTGGGCCTGGGTG < 41bp 0.517369939511446 0.741389584809039 0.14813429 0.11280739 prediction 0.448039290595186 Functional Gain - LOC100499484;LOC100499484-C9ORF174 ENSG00000197816 CDS Human protein_coding chr9:100056270 chr9:100056271 synonymous SNV . 0 22 hm1A_associated_SNPs_19875 0 0 0 6 100056259 100056280 mRNA hsa-miR-15b KIAA1529 miRanda miRanda
2192 chr9 100056271 100056271 1 + C T STAD 100056270 + 100056250 100056290 41 CTACTTTCTGTTCTTCTACAACGTGCTGCTGGGCCTGGGTG CTACTTTCTGTTCTTCTACAATGTGCTGCTGGGCCTGGGTG < 41bp 0.517369939511446 0.741389584809039 0.14813429 0.11280739 prediction 0.448039290595186 Functional Gain - LOC100499484;LOC100499484-C9ORF174 ENSG00000197816 CDS Human protein_coding chr9:100056270 chr9:100056271 synonymous SNV . 0 22 hm1A_associated_SNPs_19875 0 0 0 6 100056260 100056280 mRNA hsa-miR-195 KIAA1529 miRanda miRanda
2192 chr9 100056271 100056271 1 + C T STAD 100056270 + 100056250 100056290 41 CTACTTTCTGTTCTTCTACAACGTGCTGCTGGGCCTGGGTG CTACTTTCTGTTCTTCTACAATGTGCTGCTGGGCCTGGGTG < 41bp 0.517369939511446 0.741389584809039 0.14813429 0.11280739 prediction 0.448039290595186 Functional Gain - LOC100499484;LOC100499484-C9ORF174 ENSG00000197816 CDS Human protein_coding chr9:100056270 chr9:100056271 synonymous SNV . 0 22 hm1A_associated_SNPs_19875 0 0 0 6 100056261 100056280 mRNA hsa-miR-424 KIAA1529 miRanda miRanda
2192 chr9 100056271 100056271 1 + C T STAD 100056270 + 100056250 100056290 41 CTACTTTCTGTTCTTCTACAACGTGCTGCTGGGCCTGGGTG CTACTTTCTGTTCTTCTACAATGTGCTGCTGGGCCTGGGTG < 41bp 0.517369939511446 0.741389584809039 0.14813429 0.11280739 prediction 0.448039290595186 Functional Gain - LOC100499484;LOC100499484-C9ORF174 ENSG00000197816 CDS Human protein_coding chr9:100056270 chr9:100056271 synonymous SNV . 0 22 hm1A_associated_SNPs_19875 0 0 0 6 100056260 100056280 mRNA hsa-miR-497 KIAA1529 miRanda miRanda
2192 chr7 23240278 23240278 1 + G C LUSC 23240280 + 23240260 23240300 41 AGAGATAAACTAACAGTAGAAGAACTGGAACAATTTCAATC AGAGATAAACTAACAGTACAAGAACTGGAACAATTTCAATC < 41bp 0.504405664335645 0.728292609731962 0.08521727 0.055666804 prediction 0.447773890792635 Functional Gain - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23240280 chr7:23240278 nonsynonymous SNV 0.602 2 19 hm1A_associated_SNPs_19892 0 0 1 3 23240277 23240298 mRNA hsa-miR-203 NUPL2 miRanda miRanda
2192 chr7 23240278 23240278 1 + G C LUSC 23240280 + 23240260 23240300 41 AGAGATAAACTAACAGTAGAAGAACTGGAACAATTTCAATC AGAGATAAACTAACAGTACAAGAACTGGAACAATTTCAATC < 41bp 0.504405664335645 0.728292609731962 0.08521727 0.055666804 prediction 0.447773890792635 Functional Gain - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23240280 chr7:23240278 nonsynonymous SNV 0.602 2 19 hm1A_associated_SNPs_19892 0 0 1 3 23240267 23240289 mRNA hsa-miR-145 NUPL2 miRanda miRanda
2192 chr7 23240278 23240278 1 + G C LUSC 23240280 + 23240260 23240300 41 AGAGATAAACTAACAGTAGAAGAACTGGAACAATTTCAATC AGAGATAAACTAACAGTACAAGAACTGGAACAATTTCAATC < 41bp 0.504405664335645 0.728292609731962 0.08521727 0.055666804 prediction 0.447773890792635 Functional Gain - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23240280 chr7:23240278 nonsynonymous SNV 0.602 2 19 hm1A_associated_SNPs_19892 0 0 1 3 23240272 23240293 mRNA hsa-miR-375 NUPL2 miRanda miRanda
2192 chr20 29632656 29632656 1 + A C LUAD 29632658 + 29632638 29632678 41 CAAACTTAAAATAAGTAAAGAAGAGAGTAAAATTCTTAAAA CAAACTTAAAATAAGTAACGAAGAGAGTAAAATTCTTAAAA < 41bp 0.503781736894793 0.727501255968308 0.050038576 0.073474854 prediction 0.447439038147031 Functional Gain - FRG1BP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29632658 chr20:29632656 nonsynonymous SNV 0.998 1 19 hm1A_associated_SNPs_19913 0 0 1 2 29632655 29632676 mRNA hsa-miR-186 FRG1B miRanda miRanda
2192 chr20 29632656 29632656 1 + A C LUAD 29632658 + 29632638 29632678 41 CAAACTTAAAATAAGTAAAGAAGAGAGTAAAATTCTTAAAA CAAACTTAAAATAAGTAACGAAGAGAGTAAAATTCTTAAAA < 41bp 0.503781736894793 0.727501255968308 0.050038576 0.073474854 prediction 0.447439038147031 Functional Gain - FRG1BP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29632658 chr20:29632656 nonsynonymous SNV 0.998 1 19 hm1A_associated_SNPs_19913 0 0 1 2 29632652 29632672 mRNA hsa-miR-590-3p FRG1B miRanda miRanda
2192 chr11 67200122 67200122 1 + C T STAD 67200121 + 67200101 67200141 41 AGGGCATCTTCCTGGAAGATACGGCCTGGTGGGTGTTAATC AGGGCATCTTCCTGGAAGATATGGCCTGGTGGGTGTTAATC < 41bp 0.506802835616179 0.730260344436502 0.17457312 0.11256054 prediction 0.446915017640646 Functional Gain - RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67200121 chr11:67200122 nonsynonymous SNV 0.908 2 22 hm1A_associated_SNPs_19948 0 0 1 1 67200121 67200128 mRNA hsa-miR-214 RPS6KB2 miRanda miRanda
2192 chr6 55145154 55145154 1 + A C UCEC 55145156 + 55145136 55145176 41 TGCCCATACTGAAGACAGAGAGACTGTGTATGCCTGGTTTA TGCCCATACTGAAGACAGCGAGACTGTGTATGCCTGGTTTA < 41bp 0.518794511898674 0.742208303974757 0.09510961 0.102280945 prediction 0.446827584152167 Functional Gain - HCRTR2 ENSG00000137252 CDS Human protein_coding chr6:55145156 chr6:55145154 nonsynonymous SNV 1.000 1 19 hm1A_associated_SNPs_19950 0 0 0 1 55145148 55145173 mRNA hsa-miR-338-3p HCRTR2 miRanda miRanda
2192 chr1 79002173 79002173 1 + C T UCEC 79002172 + 79002152 79002192 41 TTTTTGCTCTCCGAATGGCAACATGGAATCAAATCTTAGAT TTTTTGCTCTCCGAATGGCAATATGGAATCAAATCTTAGAT < 41bp 0.519874196189388 0.743223106075553 0.09842062 0.090641886 prediction 0.446697819772329 Functional Gain - PTGFR ENSG00000122420 CDS Human protein_coding chr1:79002172 chr1:79002173 nonsynonymous SNV 0.996 4 22 hm1A_associated_SNPs_19964 0 0 0 1 79002153 79002176 mRNA hsa-miR-455-5p PTGFR miRanda miRanda
2192 chrX 117819773 117819773 1 + A C rs2379118 117819775 + 117819755 117819795 41 ATACGCTGAAGTGTGAGGAAATGCAGATGTACGTGACAATG ATACGCTGAAGTGTGAGGCAATGCAGATGTACGTGACAATG < 41bp 0.626539366080439 0.849546406872582 0.109748244 0.10022572 prediction 0.446014081584285 Functional Gain - DOCK11 ENSG00000147251 UTR3 Human protein_coding chrX:117819775 chrX:117819773 . . 0 19 hm1A_associated_SNPs_20006 0 0 1 1 117819773 117819795 mRNA hsa-miR-25 DOCK11 miRanda miRanda
2192 chr8 135612606 135612606 1 + C T rs540227530 135612605 + 135612585 135612625 41 GACCTGCAGCAGAGACACCTACATATAAGCATAAACTTGAG GACCTGCAGCAGAGACACCTATATATAAGCATAAACTTGAG < 41bp 0.526647638833106 0.749652264169003 0.05603546 0.06316191 prediction 0.446009250671793 Functional Gain - ZFAT-AS1 ENSG00000248492 ncRNA_exonic Human antisense chr8:135612605 chr8:135612606 . . 0 22 hm1A_associated_SNPs_20008 0 0 0 1 135612585 135612607 mRNA hsa-miR-142-3p ZFATAS miRanda miRanda
2192 chr8 134239806 134239806 1 + C T STAD 134239805 + 134239785 134239825 41 CTACAAGTCTAAGACTATCGACGTGTCCTTCCAGTGTCCTG CTACAAGTCTAAGACTATCGATGTGTCCTTCCAGTGTCCTG < 41bp 0.560084048659792 0.782917947516377 0.19281232 0.23532084 prediction 0.445667797713171 Functional Gain - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134239805 chr8:134239806 synonymous SNV . 0 22 hm1A_associated_SNPs_20030 0 0 0 1 134239793 134239817 mRNA hsa-miR-7 WISP1 miRanda miRanda
2192 chr11 125792871 125792871 1 + C T rs115245107 125792870 + 125792850 125792890 41 TTTATGTTGAGGCTTTTTCGACGTGAAACTGTCACAGATGG TTTATGTTGAGGCTTTTTCGATGTGAAACTGTCACAGATGG < 41bp 0.551170580691787 0.773887535400781 0.0994128 0.18673661 prediction 0.445433909417987 Functional Gain - DDX25 ENSG00000255027 ncRNA_intronic Human antisense chr11:125792870 chr11:125792871 . . 0 22 hm1A_associated_SNPs_20049 0 0 0 1 125792864 125792885 mRNA hsa-miR-542-3p DDX25 miRanda miRanda
2192 chr1 111827445 111827445 1 + T C UCEC 111827447 + 111827427 111827467 41 CTATGCCTACAAAGGAAATGAGTGGCTTGGATACGATAACA CTATGCCTACAAAGGAAACGAGTGGCTTGGATACGATAACA < 41bp 0.505962929153313 0.728429111535275 0.12675723 0.13769057 prediction 0.444932364763924 Functional Gain - CHIAP2 ENSG00000203878 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:111827447 chr1:111827445 . . 0 19 hm1A_associated_SNPs_20094 0 0 0 1 111827442 111827464 mRNA hsa-miR-487b LOC149620 miRanda miRanda
2192 chr1 24121077 24121077 1 + G T UCEC 24121076 + 24121056 24121096 41 CATACCCGGGTGTCATGCACAGCTCCTGTCCTCAGGTCAGT CATACCCGGGTGTCATGCACATCTCCTGTCCTCAGGTCAGT < 41bp 0.48892620798365 0.722450650748025 0.16139832 0.15020454 prediction 0.444901301496051 Functional Gain - LYPLA2 ENSG00000011009 CDS Human protein_coding chr1:24121076 chr1:24121077 nonsynonymous SNV 1.000 4 22 hm1A_associated_SNPs_20098 0 0 1 2 24121062 24121083 mRNA hsa-miR-28-5p LYPLA2 miRanda miRanda
2192 chr1 24121077 24121077 1 + G T UCEC 24121076 + 24121056 24121096 41 CATACCCGGGTGTCATGCACAGCTCCTGTCCTCAGGTCAGT CATACCCGGGTGTCATGCACATCTCCTGTCCTCAGGTCAGT < 41bp 0.48892620798365 0.722450650748025 0.16139832 0.15020454 prediction 0.444901301496051 Functional Gain - LYPLA2 ENSG00000011009 CDS Human protein_coding chr1:24121076 chr1:24121077 nonsynonymous SNV 1.000 4 22 hm1A_associated_SNPs_20098 0 0 1 2 24121060 24121083 mRNA hsa-miR-708 LYPLA2 miRanda miRanda
2192 chr11 986922 986922 1 + C T COAD 986921 + 986901 986941 41 TCTCCCATGAGGCTGTCAAGACGCACATCGAGACGGTCATC TCTCCCATGAGGCTGTCAAGATGCACATCGAGACGGTCATC < 41bp 0.51947085071546 0.741858929320877 0.3620245 0.2741925 prediction 0.444776157210834 Functional Gain - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:986921 chr11:986922 nonsynonymous SNV 0.696 4 22 hm1A_associated_SNPs_20109 0 0 1 1 986906 986928 mRNA hsa-miR-210 AP2A2 miRanda miRanda
2192 chr22 45258273 45258273 1 + A C COAD 45258275 + 45258255 45258295 41 GTGCCCTTGTGCCCCTGAACATGTTCACTGAACTGCTGATC GTGCCCTTGTGCCCCTGACCATGTTCACTGAACTGCTGATC < 41bp 0.666258808449533 0.888440222411208 0.15363476 0.79390466 prediction 0.44436282792335 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45258275 chr22:45258273 nonsynonymous SNV 0.997 4 19 hm1A_associated_SNPs_20135 0 0 1 1 45258260 45258282 mRNA hsa-miR-203 ARHGAP8 miRanda miRanda
2192 chr6 71571627 71571627 1 + C T STAD 71571626 + 71571606 71571646 41 ATCCCTGGCTGGGATCCACGACGCTTAAATACAGCTTTTGG ATCCCTGGCTGGGATCCACGATGCTTAAATACAGCTTTTGG < 41bp 0.488948299522773 0.721999916603501 0.18855959 0.3265881 prediction 0.443999833207002 Functional Gain - B3GAT2 ENSG00000112309 CDS Human protein_coding chr6:71571626 chr6:71571627 nonsynonymous SNV 0.997 3 22 hm1A_associated_SNPs_20150 0 0 1 4 71571624 71571644 mRNA hsa-miR-320a SMAP1 miRanda miRanda
2192 chr6 71571627 71571627 1 + C T STAD 71571626 + 71571606 71571646 41 ATCCCTGGCTGGGATCCACGACGCTTAAATACAGCTTTTGG ATCCCTGGCTGGGATCCACGATGCTTAAATACAGCTTTTGG < 41bp 0.488948299522773 0.721999916603501 0.18855959 0.3265881 prediction 0.443999833207002 Functional Gain - B3GAT2 ENSG00000112309 CDS Human protein_coding chr6:71571626 chr6:71571627 nonsynonymous SNV 0.997 3 22 hm1A_associated_SNPs_20150 0 0 1 4 71571624 71571644 mRNA hsa-miR-320b SMAP1 miRanda miRanda
2192 chr6 71571627 71571627 1 + C T STAD 71571626 + 71571606 71571646 41 ATCCCTGGCTGGGATCCACGACGCTTAAATACAGCTTTTGG ATCCCTGGCTGGGATCCACGATGCTTAAATACAGCTTTTGG < 41bp 0.488948299522773 0.721999916603501 0.18855959 0.3265881 prediction 0.443999833207002 Functional Gain - B3GAT2 ENSG00000112309 CDS Human protein_coding chr6:71571626 chr6:71571627 nonsynonymous SNV 0.997 3 22 hm1A_associated_SNPs_20150 0 0 1 4 71571624 71571644 mRNA hsa-miR-320c SMAP1 miRanda miRanda
2192 chr6 71571627 71571627 1 + C T STAD 71571626 + 71571606 71571646 41 ATCCCTGGCTGGGATCCACGACGCTTAAATACAGCTTTTGG ATCCCTGGCTGGGATCCACGATGCTTAAATACAGCTTTTGG < 41bp 0.488948299522773 0.721999916603501 0.18855959 0.3265881 prediction 0.443999833207002 Functional Gain - B3GAT2 ENSG00000112309 CDS Human protein_coding chr6:71571626 chr6:71571627 nonsynonymous SNV 0.997 3 22 hm1A_associated_SNPs_20150 0 0 1 4 71571625 71571644 mRNA hsa-miR-320d SMAP1 miRanda miRanda
2192 chr6 28497290 28497290 1 + G C LIHC 28497292 + 28497272 28497312 41 GGCCATCGCACTTAATAAGAATGAATATGTTTCCTTCAAGC GGCCATCGCACTTAATAACAATGAATATGTTTCCTTCAAGC < 41bp 0.496555021369217 0.721976043204978 0.0761399 0.089610726 prediction 0.443952086409957 Functional Gain - GPX5 ENSG00000224586 CDS Human protein_coding chr6:28497292 chr6:28497290 nonsynonymous SNV 0.000 2 19 hm1A_associated_SNPs_20153 0 0 0 1 28497284 28497305 mRNA hsa-miR-494 GPX5 miRanda miRanda
2192 chr11 46405023 46405023 1 + G T GBM 46405022 + 46405002 46405042 41 TCTTTCTTGTTTTACAGCCAAGAAAGGGAAGGGAAAGGACT TCTTTCTTGTTTTACAGCCAATAAAGGGAAGGGAAAGGACT < 41bp 0.5800858524551 0.801787322643413 0.15661862 0.16529313 prediction 0.443402940376624 Functional Gain - MDK ENSG00000110492 CDS Human protein_coding chr11:46405022 chr11:46405023 nonsynonymous SNV 1.000 1 22 hm1A_associated_SNPs_20190 0 0 1 4 46405019 46405031 mRNA hsa-miR-204 MDK miRanda miRanda
2192 chr11 46405023 46405023 1 + G T GBM 46405022 + 46405002 46405042 41 TCTTTCTTGTTTTACAGCCAAGAAAGGGAAGGGAAAGGACT TCTTTCTTGTTTTACAGCCAATAAAGGGAAGGGAAAGGACT < 41bp 0.5800858524551 0.801787322643413 0.15661862 0.16529313 prediction 0.443402940376624 Functional Gain - MDK ENSG00000110492 CDS Human protein_coding chr11:46405022 chr11:46405023 nonsynonymous SNV 1.000 1 22 hm1A_associated_SNPs_20190 0 0 1 4 46405010 46405031 mRNA hsa-miR-204 MDK miRanda miRanda
2192 chr11 46405023 46405023 1 + G T GBM 46405022 + 46405002 46405042 41 TCTTTCTTGTTTTACAGCCAAGAAAGGGAAGGGAAAGGACT TCTTTCTTGTTTTACAGCCAATAAAGGGAAGGGAAAGGACT < 41bp 0.5800858524551 0.801787322643413 0.15661862 0.16529313 prediction 0.443402940376624 Functional Gain - MDK ENSG00000110492 CDS Human protein_coding chr11:46405022 chr11:46405023 nonsynonymous SNV 1.000 1 22 hm1A_associated_SNPs_20190 0 0 1 4 46405019 46405031 mRNA hsa-miR-211 MDK miRanda miRanda
2192 chr11 46405023 46405023 1 + G T GBM 46405022 + 46405002 46405042 41 TCTTTCTTGTTTTACAGCCAAGAAAGGGAAGGGAAAGGACT TCTTTCTTGTTTTACAGCCAATAAAGGGAAGGGAAAGGACT < 41bp 0.5800858524551 0.801787322643413 0.15661862 0.16529313 prediction 0.443402940376624 Functional Gain - MDK ENSG00000110492 CDS Human protein_coding chr11:46405022 chr11:46405023 nonsynonymous SNV 1.000 1 22 hm1A_associated_SNPs_20190 0 0 1 4 46405010 46405031 mRNA hsa-miR-211 MDK miRanda miRanda
2192 chr19 44681437 44681437 1 + T C STAD 44681439 + 44681419 44681459 41 TAAGCCATACAAATGTGATGAGTGTGGGAAGGGCTTCAAGT TAAGCCATACAAATGTGACGAGTGTGGGAAGGGCTTCAAGT < 41bp 0.478100312436644 0.721597131236471 0.04056412 0.054117918 prediction 0.443194262472942 Functional Gain - ZNF226 ENSG00000167380 CDS Human protein_coding chr19:44681439 chr19:44681437 synonymous SNV . 0 19 hm1A_associated_SNPs_20211 0 0 1 2 44681417 44681437 mRNA hsa-miR-23a ZNF226 miRanda miRanda
2192 chr19 44681437 44681437 1 + T C STAD 44681439 + 44681419 44681459 41 TAAGCCATACAAATGTGATGAGTGTGGGAAGGGCTTCAAGT TAAGCCATACAAATGTGACGAGTGTGGGAAGGGCTTCAAGT < 41bp 0.478100312436644 0.721597131236471 0.04056412 0.054117918 prediction 0.443194262472942 Functional Gain - ZNF226 ENSG00000167380 CDS Human protein_coding chr19:44681439 chr19:44681437 synonymous SNV . 0 19 hm1A_associated_SNPs_20211 0 0 1 2 44681417 44681437 mRNA hsa-miR-23b ZNF226 miRanda miRanda
2192 chr12 121660838 121660838 1 + C T COAD 121660837 + 121660817 121660857 41 CCCGGTGGAGGATGACACACACGTGCCACAGTGAGTCCAGC CCCGGTGGAGGATGACACACATGTGCCACAGTGAGTCCAGC < 41bp 0.517125862636204 0.738710666355885 0.2894075 0.15573445 prediction 0.443169607439361 Functional Gain - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660837 chr12:121660838 synonymous SNV . 0 22 hm1A_associated_SNPs_20214 0 0 0 2 121660823 121660844 mRNA hsa-miR-449a P2RX4 miRanda miRanda
2192 chr12 121660838 121660838 1 + C T COAD 121660837 + 121660817 121660857 41 CCCGGTGGAGGATGACACACACGTGCCACAGTGAGTCCAGC CCCGGTGGAGGATGACACACATGTGCCACAGTGAGTCCAGC < 41bp 0.517125862636204 0.738710666355885 0.2894075 0.15573445 prediction 0.443169607439361 Functional Gain - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660837 chr12:121660838 synonymous SNV . 0 22 hm1A_associated_SNPs_20214 0 0 0 2 121660823 121660844 mRNA hsa-miR-449b P2RX4 miRanda miRanda
2192 chr11 134179596 134179596 1 + C T LGG 134179595 + 134179575 134179615 41 TATGTTCCATGGTGGAACCAACTTTGGTTTCATGAACGGGG TATGTTCCATGGTGGAACCAATTTTGGTTTCATGAACGGGG < 41bp 0.519991480405462 0.741469833041155 0.12957263 0.1338807 prediction 0.442956705271385 Functional Gain - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134179595 chr11:134179596 synonymous SNV . 0 22 hm1A_associated_SNPs_20229 0 0 1 1 134179578 134179598 mRNA hsa-miR-140-5p GLB1L3 miRanda miRanda
2192 chr12 97924528 97924528 1 + T C rs140797850 97924530 + 97924510 97924550 41 AAAAATTTGCCAGTGATATGATGGCCTTGTCACAGAGATCA AAAAATTTGCCAGTGATACGATGGCCTTGTCACAGAGATCA < 41bp 0.604969924522426 0.826438680134105 0.047852933 0.13907525 prediction 0.442937511223356 Functional Gain - RMST ENSG00000255794 ncRNA_exonic Human processed_transcript chr12:97924530 chr12:97924528 . . 0 19 hm1A_associated_SNPs_20233 0 0 0 1 97924521 97924542 mRNA hsa-miR-488 RMST miRanda miRanda
2192 chr3 50314324 50314324 1 + A T rs149189946 50314323 + 50314303 50314343 41 TATTAACAGGATAACCCTTGAATGTAGCAGCCCCGGGAGGG TATTAACAGGATAACCCTTGATTGTAGCAGCCCCGGGAGGG < 41bp 0.530616912077737 0.752064789326621 0.40438914 0.3159082 prediction 0.442895754497768 Functional Gain - SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50314323 chr3:50314324 . . 0 22 hm1A_associated_SNPs_20234 0 0 1 6 50314305 50314328 mRNA hsa-miR-181a SEMA3B miRanda miRanda
2192 chr3 50314324 50314324 1 + A T rs149189946 50314323 + 50314303 50314343 41 TATTAACAGGATAACCCTTGAATGTAGCAGCCCCGGGAGGG TATTAACAGGATAACCCTTGATTGTAGCAGCCCCGGGAGGG < 41bp 0.530616912077737 0.752064789326621 0.40438914 0.3159082 prediction 0.442895754497768 Functional Gain - SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50314323 chr3:50314324 . . 0 22 hm1A_associated_SNPs_20234 0 0 1 6 50314305 50314328 mRNA hsa-miR-181b SEMA3B miRanda miRanda
2192 chr3 50314324 50314324 1 + A T rs149189946 50314323 + 50314303 50314343 41 TATTAACAGGATAACCCTTGAATGTAGCAGCCCCGGGAGGG TATTAACAGGATAACCCTTGATTGTAGCAGCCCCGGGAGGG < 41bp 0.530616912077737 0.752064789326621 0.40438914 0.3159082 prediction 0.442895754497768 Functional Gain - SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50314323 chr3:50314324 . . 0 22 hm1A_associated_SNPs_20234 0 0 1 6 50314300 50314328 mRNA hsa-miR-181c SEMA3B miRanda miRanda
2192 chr3 50314324 50314324 1 + A T rs149189946 50314323 + 50314303 50314343 41 TATTAACAGGATAACCCTTGAATGTAGCAGCCCCGGGAGGG TATTAACAGGATAACCCTTGATTGTAGCAGCCCCGGGAGGG < 41bp 0.530616912077737 0.752064789326621 0.40438914 0.3159082 prediction 0.442895754497768 Functional Gain - SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50314323 chr3:50314324 . . 0 22 hm1A_associated_SNPs_20234 0 0 1 6 50314313 50314331 mRNA hsa-miR-221 SEMA3B miRanda miRanda
2192 chr3 50314324 50314324 1 + A T rs149189946 50314323 + 50314303 50314343 41 TATTAACAGGATAACCCTTGAATGTAGCAGCCCCGGGAGGG TATTAACAGGATAACCCTTGATTGTAGCAGCCCCGGGAGGG < 41bp 0.530616912077737 0.752064789326621 0.40438914 0.3159082 prediction 0.442895754497768 Functional Gain - SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50314323 chr3:50314324 . . 0 22 hm1A_associated_SNPs_20234 0 0 1 6 50314311 50314331 mRNA hsa-miR-222 SEMA3B miRanda miRanda
2192 chr3 50314324 50314324 1 + A T rs149189946 50314323 + 50314303 50314343 41 TATTAACAGGATAACCCTTGAATGTAGCAGCCCCGGGAGGG TATTAACAGGATAACCCTTGATTGTAGCAGCCCCGGGAGGG < 41bp 0.530616912077737 0.752064789326621 0.40438914 0.3159082 prediction 0.442895754497768 Functional Gain - SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50314323 chr3:50314324 . . 0 22 hm1A_associated_SNPs_20234 0 0 1 6 50314305 50314328 mRNA hsa-miR-181d SEMA3B miRanda miRanda
2192 chr4 2939833 2939833 1 - C G rs150710427 2939831 - 2939811 2939851 41 TCCTGAAATGCACCTCTGGGATCGGGAATGGTCTGTGTGTT TCCTGAAATGCACCTCTGCGATCGGGAATGGTCTGTGTGTT < 41bp 0.456954804150513 0.721138477909232 0.21783066 0.3550585 prediction 0.442276955818465 Functional Gain - NOP14-AS1 ENSG00000249673 ncRNA_exonic Human antisense chr4:2939831 chr4:2939833 . . 0 19 hm1A_associated_SNPs_20271 0 0 1 1 2939827 2939849 mRNA hsa-miR-551b NOP14 miRanda miRanda
2192 chrX 619985 619985 1 + T C rs142367088 619987 + 619967 620007 41 CCCACCACCACACCCAGCTAATTTTTTTGATTTTTACTAGA CCCACCACCACACCCAGCCAATTTTTTTGATTTTTACTAGA < 41bp 0.475038554031629 0.720533859116132 0.114120156 0.13715741 prediction 0.441067718232263 Functional Gain - SHOX ENSG00000185960 UTR3 Human protein_coding chrX:619987 chrX:619985 . . 0 19 hm1A_associated_SNPs_20360 0 0 0 1 619962 619985 mRNA hsa-miR-138 SHOX miRanda miRanda
2192 chr3 128622968 128622968 1 + T C rs141874052 128622970 + 128622950 128622990 41 GGCTCAGTGAATTTGGATTGATTCAGGTACCAATGGTTGAG GGCTCAGTGAATTTGGATCGATTCAGGTACCAATGGTTGAG < 41bp 0.408268920420377 0.720291230757432 0.07046911 0.6147465 prediction 0.440582461514863 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128622970 chr3:128622968 nonsynonymous SNV 0.236 3 19 hm1A_associated_SNPs_20393 1 0 1 4 128622967 128622975 mRNA hsa-miR-19a ACAD9 miRanda miRanda
2192 chr3 128622968 128622968 1 + T C rs141874052 128622970 + 128622950 128622990 41 GGCTCAGTGAATTTGGATTGATTCAGGTACCAATGGTTGAG GGCTCAGTGAATTTGGATCGATTCAGGTACCAATGGTTGAG < 41bp 0.408268920420377 0.720291230757432 0.07046911 0.6147465 prediction 0.440582461514863 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128622970 chr3:128622968 nonsynonymous SNV 0.236 3 19 hm1A_associated_SNPs_20393 1 0 1 4 128622967 128622975 mRNA hsa-miR-19b ACAD9 miRanda miRanda
2192 chr3 128622968 128622968 1 + T C rs141874052 128622970 + 128622950 128622990 41 GGCTCAGTGAATTTGGATTGATTCAGGTACCAATGGTTGAG GGCTCAGTGAATTTGGATCGATTCAGGTACCAATGGTTGAG < 41bp 0.408268920420377 0.720291230757432 0.07046911 0.6147465 prediction 0.440582461514863 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128622970 chr3:128622968 nonsynonymous SNV 0.236 3 19 hm1A_associated_SNPs_20393 1 0 1 4 128622968 128622975 mRNA hsa-miR-301a ACAD9 miRanda miRanda
2192 chr3 128622968 128622968 1 + T C rs141874052 128622970 + 128622950 128622990 41 GGCTCAGTGAATTTGGATTGATTCAGGTACCAATGGTTGAG GGCTCAGTGAATTTGGATCGATTCAGGTACCAATGGTTGAG < 41bp 0.408268920420377 0.720291230757432 0.07046911 0.6147465 prediction 0.440582461514863 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128622970 chr3:128622968 nonsynonymous SNV 0.236 3 19 hm1A_associated_SNPs_20393 1 0 1 4 128622968 128622975 mRNA hsa-miR-301b ACAD9 miRanda miRanda
2192 chr17 25636254 25636254 1 + A C OV 25636256 + 25636236 25636276 41 ATCTTATGATACTCGAGTATATATCTGGGATCCACATAATG ATCTTATGATACTCGAGTCTATATCTGGGATCCACATAATG < 41bp 0.474463472127538 0.720198840251793 0.05329293 0.0857583 prediction 0.440397680503586 Functional Gain - WSB1 ENSG00000109046 CDS Human protein_coding chr17:25636256 chr17:25636254 synonymous SNV . 0 19 hm1A_associated_SNPs_20406 0 0 1 1 25636252 25636273 mRNA hsa-miR-299-3p WSB1 miRanda miRanda
2192 chr1 6639591 6639591 1 + G T UCEC 6639590 + 6639570 6639610 41 CGCCCAGACCTCAACAGCACAGAGCACTTCCAGGCCTCCAT CGCCCAGACCTCAACAGCACATAGCACTTCCAGGCCTCCAT < 41bp 0.468081894339212 0.720050185485702 0.2870425 0.22125793 prediction 0.440100370971403 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6639590 chr1:6639591 stopgain 0.993 0 22 hm1A_associated_SNPs_20420 0 0 0 13 6639577 6639599 mRNA hsa-miR-302a TAS1R1 miRanda miRanda
2192 chr1 6639591 6639591 1 + G T UCEC 6639590 + 6639570 6639610 41 CGCCCAGACCTCAACAGCACAGAGCACTTCCAGGCCTCCAT CGCCCAGACCTCAACAGCACATAGCACTTCCAGGCCTCCAT < 41bp 0.468081894339212 0.720050185485702 0.2870425 0.22125793 prediction 0.440100370971403 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6639590 chr1:6639591 stopgain 0.993 0 22 hm1A_associated_SNPs_20420 0 0 0 13 6639578 6639599 mRNA hsa-miR-302b TAS1R1 miRanda miRanda
2192 chr1 6639591 6639591 1 + G T UCEC 6639590 + 6639570 6639610 41 CGCCCAGACCTCAACAGCACAGAGCACTTCCAGGCCTCCAT CGCCCAGACCTCAACAGCACATAGCACTTCCAGGCCTCCAT < 41bp 0.468081894339212 0.720050185485702 0.2870425 0.22125793 prediction 0.440100370971403 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6639590 chr1:6639591 stopgain 0.993 0 22 hm1A_associated_SNPs_20420 0 0 0 13 6639578 6639599 mRNA hsa-miR-302c TAS1R1 miRanda miRanda
2192 chr1 6639591 6639591 1 + G T UCEC 6639590 + 6639570 6639610 41 CGCCCAGACCTCAACAGCACAGAGCACTTCCAGGCCTCCAT CGCCCAGACCTCAACAGCACATAGCACTTCCAGGCCTCCAT < 41bp 0.468081894339212 0.720050185485702 0.2870425 0.22125793 prediction 0.440100370971403 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6639590 chr1:6639591 stopgain 0.993 0 22 hm1A_associated_SNPs_20420 0 0 0 13 6639576 6639599 mRNA hsa-miR-302d TAS1R1 miRanda miRanda
2192 chr1 6639591 6639591 1 + G T UCEC 6639590 + 6639570 6639610 41 CGCCCAGACCTCAACAGCACAGAGCACTTCCAGGCCTCCAT CGCCCAGACCTCAACAGCACATAGCACTTCCAGGCCTCCAT < 41bp 0.468081894339212 0.720050185485702 0.2870425 0.22125793 prediction 0.440100370971403 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6639590 chr1:6639591 stopgain 0.993 0 22 hm1A_associated_SNPs_20420 0 0 0 13 6639576 6639599 mRNA hsa-miR-372 TAS1R1 miRanda miRanda
2192 chr1 6639591 6639591 1 + G T UCEC 6639590 + 6639570 6639610 41 CGCCCAGACCTCAACAGCACAGAGCACTTCCAGGCCTCCAT CGCCCAGACCTCAACAGCACATAGCACTTCCAGGCCTCCAT < 41bp 0.468081894339212 0.720050185485702 0.2870425 0.22125793 prediction 0.440100370971403 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6639590 chr1:6639591 stopgain 0.993 0 22 hm1A_associated_SNPs_20420 0 0 0 13 6639575 6639599 mRNA hsa-miR-373 TAS1R1 miRanda miRanda
2192 chr1 6639591 6639591 1 + G T UCEC 6639590 + 6639570 6639610 41 CGCCCAGACCTCAACAGCACAGAGCACTTCCAGGCCTCCAT CGCCCAGACCTCAACAGCACATAGCACTTCCAGGCCTCCAT < 41bp 0.468081894339212 0.720050185485702 0.2870425 0.22125793 prediction 0.440100370971403 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6639590 chr1:6639591 stopgain 0.993 0 22 hm1A_associated_SNPs_20420 0 0 0 13 6639586 6639608 mRNA hsa-miR-485-5p TAS1R1 miRanda miRanda
2192 chr1 6639591 6639591 1 + G T UCEC 6639590 + 6639570 6639610 41 CGCCCAGACCTCAACAGCACAGAGCACTTCCAGGCCTCCAT CGCCCAGACCTCAACAGCACATAGCACTTCCAGGCCTCCAT < 41bp 0.468081894339212 0.720050185485702 0.2870425 0.22125793 prediction 0.440100370971403 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6639590 chr1:6639591 stopgain 0.993 0 22 hm1A_associated_SNPs_20420 0 0 0 13 6639577 6639599 mRNA hsa-miR-520e TAS1R1 miRanda miRanda
2192 chr1 6639591 6639591 1 + G T UCEC 6639590 + 6639570 6639610 41 CGCCCAGACCTCAACAGCACAGAGCACTTCCAGGCCTCCAT CGCCCAGACCTCAACAGCACATAGCACTTCCAGGCCTCCAT < 41bp 0.468081894339212 0.720050185485702 0.2870425 0.22125793 prediction 0.440100370971403 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6639590 chr1:6639591 stopgain 0.993 0 22 hm1A_associated_SNPs_20420 0 0 0 13 6639578 6639599 mRNA hsa-miR-520a-3p TAS1R1 miRanda miRanda
2192 chr1 6639591 6639591 1 + G T UCEC 6639590 + 6639570 6639610 41 CGCCCAGACCTCAACAGCACAGAGCACTTCCAGGCCTCCAT CGCCCAGACCTCAACAGCACATAGCACTTCCAGGCCTCCAT < 41bp 0.468081894339212 0.720050185485702 0.2870425 0.22125793 prediction 0.440100370971403 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6639590 chr1:6639591 stopgain 0.993 0 22 hm1A_associated_SNPs_20420 0 0 0 13 6639577 6639599 mRNA hsa-miR-520b TAS1R1 miRanda miRanda
2192 chr1 6639591 6639591 1 + G T UCEC 6639590 + 6639570 6639610 41 CGCCCAGACCTCAACAGCACAGAGCACTTCCAGGCCTCCAT CGCCCAGACCTCAACAGCACATAGCACTTCCAGGCCTCCAT < 41bp 0.468081894339212 0.720050185485702 0.2870425 0.22125793 prediction 0.440100370971403 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6639590 chr1:6639591 stopgain 0.993 0 22 hm1A_associated_SNPs_20420 0 0 0 13 6639576 6639599 mRNA hsa-miR-520c-3p TAS1R1 miRanda miRanda
2192 chr1 6639591 6639591 1 + G T UCEC 6639590 + 6639570 6639610 41 CGCCCAGACCTCAACAGCACAGAGCACTTCCAGGCCTCCAT CGCCCAGACCTCAACAGCACATAGCACTTCCAGGCCTCCAT < 41bp 0.468081894339212 0.720050185485702 0.2870425 0.22125793 prediction 0.440100370971403 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6639590 chr1:6639591 stopgain 0.993 0 22 hm1A_associated_SNPs_20420 0 0 0 13 6639578 6639599 mRNA hsa-miR-520d-3p TAS1R1 miRanda miRanda
2192 chr1 6639591 6639591 1 + G T UCEC 6639590 + 6639570 6639610 41 CGCCCAGACCTCAACAGCACAGAGCACTTCCAGGCCTCCAT CGCCCAGACCTCAACAGCACATAGCACTTCCAGGCCTCCAT < 41bp 0.468081894339212 0.720050185485702 0.2870425 0.22125793 prediction 0.440100370971403 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6639590 chr1:6639591 stopgain 0.993 0 22 hm1A_associated_SNPs_20420 0 0 0 13 6639584 6639599 mRNA hsa-miR-302e TAS1R1 miRanda miRanda
2192 chr11 113857744 113857744 1 + G T UCEC 113857743 + 113857723 113857763 41 AGGCCCCCAGCCACCTCCCAAGCCACCAAGACTGATGACTG AGGCCCCCAGCCACCTCCCAATCCACCAAGACTGATGACTG < 41bp 0.562516308229 0.78224501749853 0.2765224 0.31537575 prediction 0.43945741853906 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113857743 chr11:113857744 nonsynonymous SNV 0.953 0 22 hm1A_associated_SNPs_20466 0 0 0 2 113857742 113857766 mRNA hsa-miR-15b HTR3A miRanda miRanda
2192 chr11 113857744 113857744 1 + G T UCEC 113857743 + 113857723 113857763 41 AGGCCCCCAGCCACCTCCCAAGCCACCAAGACTGATGACTG AGGCCCCCAGCCACCTCCCAATCCACCAAGACTGATGACTG < 41bp 0.562516308229 0.78224501749853 0.2765224 0.31537575 prediction 0.43945741853906 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113857743 chr11:113857744 nonsynonymous SNV 0.953 0 22 hm1A_associated_SNPs_20466 0 0 0 2 113857740 113857766 mRNA hsa-miR-497 HTR3A miRanda miRanda
2192 chr15 41023301 41023301 1 + C T rs139810756 41023300 + 41023280 41023320 41 AACCAGAATCTGCAAAATCTACGACTCTCCCTGTCTTCCTG AACCAGAATCTGCAAAATCTATGACTCTCCCTGTCTTCCTG < 41bp 0.464895320723033 0.719637454966878 0.24854183 0.21252018 prediction 0.439274909933756 Functional Gain - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41023300 chr15:41023301 stopgain 0.998 0 22 hm1A_associated_SNPs_20476 0 0 1 1 41023297 41023319 mRNA hsa-miR-7 RAD51 miRanda miRanda
2192 chr15 69709792 69709792 1 + C T rs61751119 69709791 + 69709771 69709811 41 TAGAAGTGATCAATAATACAACTGTTCAGCTTCATACTCCT TAGAAGTGATCAATAATACAATTGTTCAGCTTCATACTCCT < 41bp 0.508508622269807 0.727676525959659 0.09541929 0.087585896 prediction 0.438335807379703 Functional Gain - KIF23 ENSG00000137807 CDS Human protein_coding chr15:69709791 chr15:69709792 nonsynonymous SNV 0.868 3 22 hm1A_associated_SNPs_20558 0 0 1 1 69709789 69709810 mRNA hsa-miR-143 KIF23 miRanda miRanda
2192 chr8 42179924 42179924 1 + T C UCEC 42179926 + 42179906 42179946 41 CCAAGGTGGAAGAGGTGGTGAGCTTAATGAATGAGGATGAG CCAAGGTGGAAGAGGTGGCGAGCTTAATGAATGAGGATGAG < 41bp 0.603931619576339 0.823077768840893 0.55048776 0.61936796 prediction 0.438292298529108 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42179926 chr8:42179924 nonsynonymous SNV 0.568 1 19 hm1A_associated_SNPs_20562 0 0 1 2 42179906 42179927 mRNA hsa-miR-197 IKBKB miRanda miRanda
2192 chr8 42179924 42179924 1 + T C UCEC 42179926 + 42179906 42179946 41 CCAAGGTGGAAGAGGTGGTGAGCTTAATGAATGAGGATGAG CCAAGGTGGAAGAGGTGGCGAGCTTAATGAATGAGGATGAG < 41bp 0.603931619576339 0.823077768840893 0.55048776 0.61936796 prediction 0.438292298529108 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42179926 chr8:42179924 nonsynonymous SNV 0.568 1 19 hm1A_associated_SNPs_20562 0 0 1 2 42179910 42179931 mRNA hsa-miR-224 IKBKB miRanda miRanda
2192 chr6 37284922 37284922 1 + C T COAD 37284921 + 37284901 37284941 41 GTTCTCCCACTTTCATCTCTACGTGTGTGCAGCCTTCTTGA GTTCTCCCACTTTCATCTCTATGTGTGTGCAGCCTTCTTGA < 41bp 0.482442528332244 0.718860897817755 0.18191484 0.1589025 prediction 0.43772179563551 Functional Gain - TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37284921 chr6:37284922 synonymous SNV . 0 22 hm1A_associated_SNPs_20614 0 0 1 3 37284913 37284937 mRNA hsa-miR-18a TBC1D22B miRanda miRanda
2192 chr6 37284922 37284922 1 + C T COAD 37284921 + 37284901 37284941 41 GTTCTCCCACTTTCATCTCTACGTGTGTGCAGCCTTCTTGA GTTCTCCCACTTTCATCTCTATGTGTGTGCAGCCTTCTTGA < 41bp 0.482442528332244 0.718860897817755 0.18191484 0.1589025 prediction 0.43772179563551 Functional Gain - TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37284921 chr6:37284922 synonymous SNV . 0 22 hm1A_associated_SNPs_20614 0 0 1 3 37284922 37284944 mRNA hsa-miR-383 TBC1D22B miRanda miRanda
2192 chr6 37284922 37284922 1 + C T COAD 37284921 + 37284901 37284941 41 GTTCTCCCACTTTCATCTCTACGTGTGTGCAGCCTTCTTGA GTTCTCCCACTTTCATCTCTATGTGTGTGCAGCCTTCTTGA < 41bp 0.482442528332244 0.718860897817755 0.18191484 0.1589025 prediction 0.43772179563551 Functional Gain - TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37284921 chr6:37284922 synonymous SNV . 0 22 hm1A_associated_SNPs_20614 0 0 1 3 37284913 37284937 mRNA hsa-miR-18b TBC1D22B miRanda miRanda
2192 chr2 69040461 69040461 1 + C T rs147739260 69040460 + 69040440 69040480 41 GGCTTCCCTGTTAAAGCTCTACCTCCGAGACCTCCCAGAGC GGCTTCCCTGTTAAAGCTCTATCTCCGAGACCTCCCAGAGC < 41bp 0.557925324407102 0.776663028734839 0.45180377 0.31832197 prediction 0.437475408655473 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69040460 chr2:69040461 synonymous SNV . 0 22 hm1A_associated_SNPs_20631 0 0 0 11 69040445 69040465 mRNA hsa-let-7a ARHGAP25 miRanda miRanda
2192 chr2 69040461 69040461 1 + C T rs147739260 69040460 + 69040440 69040480 41 GGCTTCCCTGTTAAAGCTCTACCTCCGAGACCTCCCAGAGC GGCTTCCCTGTTAAAGCTCTATCTCCGAGACCTCCCAGAGC < 41bp 0.557925324407102 0.776663028734839 0.45180377 0.31832197 prediction 0.437475408655473 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69040460 chr2:69040461 synonymous SNV . 0 22 hm1A_associated_SNPs_20631 0 0 0 11 69040445 69040465 mRNA hsa-let-7b ARHGAP25 miRanda miRanda
2192 chr2 69040461 69040461 1 + C T rs147739260 69040460 + 69040440 69040480 41 GGCTTCCCTGTTAAAGCTCTACCTCCGAGACCTCCCAGAGC GGCTTCCCTGTTAAAGCTCTATCTCCGAGACCTCCCAGAGC < 41bp 0.557925324407102 0.776663028734839 0.45180377 0.31832197 prediction 0.437475408655473 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69040460 chr2:69040461 synonymous SNV . 0 22 hm1A_associated_SNPs_20631 0 0 0 11 69040445 69040465 mRNA hsa-let-7c ARHGAP25 miRanda miRanda
2192 chr2 69040461 69040461 1 + C T rs147739260 69040460 + 69040440 69040480 41 GGCTTCCCTGTTAAAGCTCTACCTCCGAGACCTCCCAGAGC GGCTTCCCTGTTAAAGCTCTATCTCCGAGACCTCCCAGAGC < 41bp 0.557925324407102 0.776663028734839 0.45180377 0.31832197 prediction 0.437475408655473 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69040460 chr2:69040461 synonymous SNV . 0 22 hm1A_associated_SNPs_20631 0 0 0 11 69040445 69040465 mRNA hsa-let-7d ARHGAP25 miRanda miRanda
2192 chr2 69040461 69040461 1 + C T rs147739260 69040460 + 69040440 69040480 41 GGCTTCCCTGTTAAAGCTCTACCTCCGAGACCTCCCAGAGC GGCTTCCCTGTTAAAGCTCTATCTCCGAGACCTCCCAGAGC < 41bp 0.557925324407102 0.776663028734839 0.45180377 0.31832197 prediction 0.437475408655473 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69040460 chr2:69040461 synonymous SNV . 0 22 hm1A_associated_SNPs_20631 0 0 0 11 69040445 69040465 mRNA hsa-let-7e ARHGAP25 miRanda miRanda
2192 chr2 69040461 69040461 1 + C T rs147739260 69040460 + 69040440 69040480 41 GGCTTCCCTGTTAAAGCTCTACCTCCGAGACCTCCCAGAGC GGCTTCCCTGTTAAAGCTCTATCTCCGAGACCTCCCAGAGC < 41bp 0.557925324407102 0.776663028734839 0.45180377 0.31832197 prediction 0.437475408655473 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69040460 chr2:69040461 synonymous SNV . 0 22 hm1A_associated_SNPs_20631 0 0 0 11 69040445 69040465 mRNA hsa-let-7f ARHGAP25 miRanda miRanda
2192 chr2 69040461 69040461 1 + C T rs147739260 69040460 + 69040440 69040480 41 GGCTTCCCTGTTAAAGCTCTACCTCCGAGACCTCCCAGAGC GGCTTCCCTGTTAAAGCTCTATCTCCGAGACCTCCCAGAGC < 41bp 0.557925324407102 0.776663028734839 0.45180377 0.31832197 prediction 0.437475408655473 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69040460 chr2:69040461 synonymous SNV . 0 22 hm1A_associated_SNPs_20631 0 0 0 11 69040446 69040465 mRNA hsa-miR-98 ARHGAP25 miRanda miRanda
2192 chr2 69040461 69040461 1 + C T rs147739260 69040460 + 69040440 69040480 41 GGCTTCCCTGTTAAAGCTCTACCTCCGAGACCTCCCAGAGC GGCTTCCCTGTTAAAGCTCTATCTCCGAGACCTCCCAGAGC < 41bp 0.557925324407102 0.776663028734839 0.45180377 0.31832197 prediction 0.437475408655473 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69040460 chr2:69040461 synonymous SNV . 0 22 hm1A_associated_SNPs_20631 0 0 0 11 69040445 69040465 mRNA hsa-let-7g ARHGAP25 miRanda miRanda
2192 chr2 69040461 69040461 1 + C T rs147739260 69040460 + 69040440 69040480 41 GGCTTCCCTGTTAAAGCTCTACCTCCGAGACCTCCCAGAGC GGCTTCCCTGTTAAAGCTCTATCTCCGAGACCTCCCAGAGC < 41bp 0.557925324407102 0.776663028734839 0.45180377 0.31832197 prediction 0.437475408655473 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69040460 chr2:69040461 synonymous SNV . 0 22 hm1A_associated_SNPs_20631 0 0 0 11 69040445 69040465 mRNA hsa-let-7i ARHGAP25 miRanda miRanda
2192 chr2 69040461 69040461 1 + C T rs147739260 69040460 + 69040440 69040480 41 GGCTTCCCTGTTAAAGCTCTACCTCCGAGACCTCCCAGAGC GGCTTCCCTGTTAAAGCTCTATCTCCGAGACCTCCCAGAGC < 41bp 0.557925324407102 0.776663028734839 0.45180377 0.31832197 prediction 0.437475408655473 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69040460 chr2:69040461 synonymous SNV . 0 22 hm1A_associated_SNPs_20631 0 0 0 11 69040460 69040480 mRNA hsa-miR-330-5p ARHGAP25 miRanda miRanda
2192 chr2 69040461 69040461 1 + C T rs147739260 69040460 + 69040440 69040480 41 GGCTTCCCTGTTAAAGCTCTACCTCCGAGACCTCCCAGAGC GGCTTCCCTGTTAAAGCTCTATCTCCGAGACCTCCCAGAGC < 41bp 0.557925324407102 0.776663028734839 0.45180377 0.31832197 prediction 0.437475408655473 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69040460 chr2:69040461 synonymous SNV . 0 22 hm1A_associated_SNPs_20631 0 0 0 11 69040461 69040480 mRNA hsa-miR-326 ARHGAP25 miRanda miRanda
2192 chr7 143027921 143027921 1 + A C UCEC 143027923 + 143027903 143027943 41 GCTGTTCGGAACTACTGGAGAGGATTCTTTGCAGCCACGTT GCTGTTCGGAACTACTGGCGAGGATTCTTTGCAGCCACGTT < 41bp 0.470152998386562 0.718611178150398 0.29442826 0.37502533 prediction 0.437222356300796 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143027923 chr7:143027921 synonymous SNV . 0 19 hm1A_associated_SNPs_20654 0 0 0 3 143027898 143027921 mRNA hsa-miR-199a-5p CLCN1 miRanda miRanda
2192 chr7 143027921 143027921 1 + A C UCEC 143027923 + 143027903 143027943 41 GCTGTTCGGAACTACTGGAGAGGATTCTTTGCAGCCACGTT GCTGTTCGGAACTACTGGCGAGGATTCTTTGCAGCCACGTT < 41bp 0.470152998386562 0.718611178150398 0.29442826 0.37502533 prediction 0.437222356300796 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143027923 chr7:143027921 synonymous SNV . 0 19 hm1A_associated_SNPs_20654 0 0 0 3 143027898 143027921 mRNA hsa-miR-199b-5p CLCN1 miRanda miRanda
2192 chr7 143027921 143027921 1 + A C UCEC 143027923 + 143027903 143027943 41 GCTGTTCGGAACTACTGGAGAGGATTCTTTGCAGCCACGTT GCTGTTCGGAACTACTGGCGAGGATTCTTTGCAGCCACGTT < 41bp 0.470152998386562 0.718611178150398 0.29442826 0.37502533 prediction 0.437222356300796 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143027923 chr7:143027921 synonymous SNV . 0 19 hm1A_associated_SNPs_20654 0 0 0 3 143027911 143027933 mRNA hsa-miR-186 CLCN1 miRanda miRanda
2192 chr9 138454738 138454738 1 + C T CESC 138454737 + 138454717 138454757 41 TCCAAAGAAGTTCAAGATCAACTGTGAGTGTCCCCAGGCCC TCCAAAGAAGTTCAAGATCAATTGTGAGTGTCCCCAGGCCC < 41bp 0.526637093644249 0.745185259394472 0.27453554 0.29044622 prediction 0.437096331500445 Functional Gain - PAEP ENSG00000122133 CDS Human protein_coding chr9:138454737 chr9:138454738 synonymous SNV . 0 22 hm1A_associated_SNPs_20662 0 0 0 1 138454722 138454739 mRNA hsa-miR-223 PAEP miRanda miRanda
2192 chr16 22926312 22926312 1 + C T UCEC 22926311 + 22926291 22926331 41 GCCAGATCACGCTGGAGAAGACGCCCAGCTACTTTGTCACT GCCAGATCACGCTGGAGAAGATGCCCAGCTACTTTGTCACT < 41bp 0.559117970654195 0.777640479654777 0.5823909 0.33407658 prediction 0.437045018001163 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926311 chr16:22926312 nonsynonymous SNV 0.995 4 22 hm1A_associated_SNPs_20665 0 0 0 1 22926303 22926326 mRNA hsa-miR-93 HS3ST2 miRanda miRanda
2192 chr21 34169661 34169661 1 + C T rs144095477 34169660 + 34169640 34169680 41 GCTCTGCCTCCCAGGTTCCAACGATTGTCTTGTCTCAGCCT GCTCTGCCTCCCAGGTTCCAATGATTGTCTTGTCTCAGCCT < 41bp 0.482434278382204 0.718466939266498 0.18367115 0.09874037 prediction 0.436933878532995 Functional Gain - C21orf62-AS1 ENSG00000205930 UTR3 Human antisense chr21:34169660 chr21:34169661 . . 0 22 hm1A_associated_SNPs_20672 0 0 0 1 34169660 34169682 mRNA hsa-miR-485-5p C21orf49 miRanda miRanda
2192 chr16 31498891 31498891 1 + A C UCEC 31498893 + 31498873 31498913 41 TTCGGGTCTCTTCGACAAATACCTGGGAGCAGCGACTTCGC TTCGGGTCTCTTCGACAACTACCTGGGAGCAGCGACTTCGC < 41bp 0.479257300874293 0.718202721958673 0.46286768 0.60267633 prediction 0.436405443917345 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31498893 chr16:31498891 nonsynonymous SNV 1.000 5 19 hm1A_associated_SNPs_20715 0 0 0 4 31498885 31498911 mRNA hsa-miR-302a SLC5A2 miRanda miRanda
2192 chr16 31498891 31498891 1 + A C UCEC 31498893 + 31498873 31498913 41 TTCGGGTCTCTTCGACAAATACCTGGGAGCAGCGACTTCGC TTCGGGTCTCTTCGACAACTACCTGGGAGCAGCGACTTCGC < 41bp 0.479257300874293 0.718202721958673 0.46286768 0.60267633 prediction 0.436405443917345 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31498893 chr16:31498891 nonsynonymous SNV 1.000 5 19 hm1A_associated_SNPs_20715 0 0 0 4 31498885 31498911 mRNA hsa-miR-302b SLC5A2 miRanda miRanda
2192 chr16 31498891 31498891 1 + A C UCEC 31498893 + 31498873 31498913 41 TTCGGGTCTCTTCGACAAATACCTGGGAGCAGCGACTTCGC TTCGGGTCTCTTCGACAACTACCTGGGAGCAGCGACTTCGC < 41bp 0.479257300874293 0.718202721958673 0.46286768 0.60267633 prediction 0.436405443917345 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31498893 chr16:31498891 nonsynonymous SNV 1.000 5 19 hm1A_associated_SNPs_20715 0 0 0 4 31498870 31498892 mRNA hsa-miR-450a SLC5A2 miRanda miRanda
2192 chr16 31498891 31498891 1 + A C UCEC 31498893 + 31498873 31498913 41 TTCGGGTCTCTTCGACAAATACCTGGGAGCAGCGACTTCGC TTCGGGTCTCTTCGACAACTACCTGGGAGCAGCGACTTCGC < 41bp 0.479257300874293 0.718202721958673 0.46286768 0.60267633 prediction 0.436405443917345 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31498893 chr16:31498891 nonsynonymous SNV 1.000 5 19 hm1A_associated_SNPs_20715 0 0 0 4 31498889 31498911 mRNA hsa-miR-520d-3p SLC5A2 miRanda miRanda
2192 chr14 104038089 104038089 1 + A C UCEC 104038091 + 104038071 104038111 41 TTGGAACAAAAGCTTAGAAAATTAAGACAAGAAACACAAGA TTGGAACAAAAGCTTAGACAATTAAGACAAGAAACACAAGA < 41bp 0.546985905323611 0.765177753806856 0.111631006 0.11506361 prediction 0.436383696966491 Functional Gain - APOPT1 ENSG00000256053;ENSG00000256500 CDS Human other chr14:104038091 chr14:104038089 nonsynonymous SNV 0.978 0 19 hm1A_associated_SNPs_20717 0 0 1 2 104038079 104038102 mRNA hsa-miR-187 C14orf153 miRanda miRanda
2192 chr14 104038089 104038089 1 + A C UCEC 104038091 + 104038071 104038111 41 TTGGAACAAAAGCTTAGAAAATTAAGACAAGAAACACAAGA TTGGAACAAAAGCTTAGACAATTAAGACAAGAAACACAAGA < 41bp 0.546985905323611 0.765177753806856 0.111631006 0.11506361 prediction 0.436383696966491 Functional Gain - APOPT1 ENSG00000256053;ENSG00000256500 CDS Human other chr14:104038091 chr14:104038089 nonsynonymous SNV 0.978 0 19 hm1A_associated_SNPs_20717 0 0 1 2 104038074 104038094 mRNA hsa-miR-590-3p C14orf153 miRanda miRanda
2192 chr11 4147959 4147959 1 + A C UCEC 4147961 + 4147941 4147981 41 GCCCTGAATATGTATGTCACATCAGAACACACATACGACTT GCCCTGAATATGTATGTCCCATCAGAACACACATACGACTT < 41bp 0.638509822959317 0.856532093611253 0.062449396 0.759084 prediction 0.436044541303871 Functional Gain - RRM1 ENSG00000167325 CDS Human protein_coding chr11:4147961 chr11:4147959 nonsynonymous SNV 0.999 1 19 hm1A_associated_SNPs_20749 0 0 1 1 4147940 4147961 mRNA hsa-miR-542-3p RRM1 miRanda miRanda
2192 chr19 41448074 41448074 1 + C T GBM 41448073 + 41448053 41448093 41 CACCAGCACCACTCTCCGCTACGGCTTCCTGCTCATGCTCA CACCAGCACCACTCTCCGCTATGGCTTCCTGCTCATGCTCA < 41bp 0.483040981620737 0.717979878050954 0.19668189 0.17447257 prediction 0.435959756101909 Functional Gain - CYP2B7P ENSG00000256612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:41448073 chr19:41448074 . . 0 22 hm1A_associated_SNPs_20756 0 0 0 1 41448068 41448093 mRNA hsa-miR-143 CYP2B7P1 miRanda miRanda
2192 chr1 166990920 166990920 1 + G T LUAD 166990919 + 166990899 166990939 41 TCCTAGGTGACTACCCATCTAGGGCAAAAATTTCTGGCCAA TCCTAGGTGACTACCCATCTATGGCAAAAATTTCTGGCCAA < 41bp 0.52027488831122 0.738095196607611 0.14593655 0.1423097 prediction 0.435640616592781 Functional Gain - MAEL ENSG00000143194 CDS Human protein_coding chr1:166990919 chr1:166990920 nonsynonymous SNV 0.998 0 22 hm1A_associated_SNPs_20780 0 0 0 1 166990911 166990929 mRNA hsa-miR-129-5p MAEL miRanda miRanda
2192 chr4 99982412 99982412 1 + G C BLCA 99982414 + 99982394 99982434 41 GTCACAGACACTGGCTGTGAAATCCTAACCCGGCGACTTGA GTCACAGACACTGGCTGTCAAATCCTAACCCGGCGACTTGA < 41bp 0.555856209696688 0.773661746811788 0.18430299 0.21566463 prediction 0.4356110742302 Functional Gain - METAP1 ENSG00000164024 CDS Human protein_coding chr4:99982414 chr4:99982412 nonsynonymous SNV 0.211 3 19 hm1A_associated_SNPs_20781 0 0 1 1 99982398 99982419 mRNA hsa-miR-876-5p METAP1 miRanda miRanda
2192 chr13 32527102 32527102 1 + A C UCEC 32527104 + 32527084 32527124 41 CCGGCCAAGAAGCTAGCCACACCAGCAGAGGATGACGAGGA CCGGCCAAGAAGCTAGCCCCACCAGCAGAGGATGACGAGGA < 41bp 0.462446590484083 0.717721588212806 0.62904537 0.6304066 prediction 0.435443176425612 Functional Gain - EEF1DP3 ENSG00000229715 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr13:32527104 chr13:32527102 . . 0 19 hm1A_associated_SNPs_20796 0 0 0 1 32527088 32527110 mRNA hsa-miR-138 EEF1DP3 miRanda miRanda
2192 chr19 10753977 10753977 1 + C T rs568662478 10753976 + 10753956 10753996 41 GGAGGACCTGGAGAGGAATGACGGCTCGGCCGAGAGGCCTT GGAGGACCTGGAGAGGAATGATGGCTCGGCCGAGAGGCCTT < 41bp 0.519486873852143 0.737182646512447 0.6372411 0.5798081 prediction 0.435391545320607 Functional Gain - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10753976 chr19:10753977 synonymous SNV . 0 22 hm1A_associated_SNPs_20800 0 0 0 1 10753964 10753985 mRNA hsa-miR-615-3p SLC44A2 miRanda miRanda
2192 chr3 195453261 195453261 1 + C T SKCM 195453260 + 195453240 195453280 41 CACCGACCATGGACATCGCAACCAAGGGGCCCTTCCCCACC CACCGACCATGGACATCGCAATCAAGGGGCCCTTCCCCACC < 41bp 0.572515336584372 0.790183334641425 0.2765156 0.24623403 prediction 0.435335996114106 Functional Gain - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195453260 chr3:195453261 nonsynonymous SNV 0.008 1 22 hm1A_associated_SNPs_20805 0 0 0 1 195453259 195453280 mRNA hsa-miR-491-5p MUC20 miRanda miRanda
2192 chr2 37475354 37475354 1 + A C COAD 37475356 + 37475336 37475376 41 ATATGTTAATGAATCCAAAGAAGATGGGAGAGAGATTTAAC ATATGTTAATGAATCCAACGAAGATGGGAGAGAGATTTAAC < 41bp 0.436206151922168 0.71726593515526 0.095041096 0.08498445 prediction 0.43453187031052 Functional Gain - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475356 chr2:37475354 nonsynonymous SNV 0.997 0 19 hm1A_associated_SNPs_20852 0 0 1 3 37475334 37475356 mRNA hsa-miR-9 C2orf56 miRanda miRanda
2192 chr2 37475354 37475354 1 + A C COAD 37475356 + 37475336 37475376 41 ATATGTTAATGAATCCAAAGAAGATGGGAGAGAGATTTAAC ATATGTTAATGAATCCAACGAAGATGGGAGAGAGATTTAAC < 41bp 0.436206151922168 0.71726593515526 0.095041096 0.08498445 prediction 0.43453187031052 Functional Gain - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475356 chr2:37475354 nonsynonymous SNV 0.997 0 19 hm1A_associated_SNPs_20852 0 0 1 3 37475345 37475366 mRNA hsa-miR-150 C2orf56 miRanda miRanda
2192 chr2 37475354 37475354 1 + A C COAD 37475356 + 37475336 37475376 41 ATATGTTAATGAATCCAAAGAAGATGGGAGAGAGATTTAAC ATATGTTAATGAATCCAACGAAGATGGGAGAGAGATTTAAC < 41bp 0.436206151922168 0.71726593515526 0.095041096 0.08498445 prediction 0.43453187031052 Functional Gain - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475356 chr2:37475354 nonsynonymous SNV 0.997 0 19 hm1A_associated_SNPs_20852 0 0 1 3 37475352 37475373 mRNA hsa-miR-216b C2orf56 miRanda miRanda
2192 chr5 76332437 76332437 1 + T C LIHC 76332439 + 76332419 76332459 41 AGAAGGCTCATCATTAGCTGAAAGTTTGAGAGCTGCAGCAG AGAAGGCTCATCATTAGCCGAAAGTTTGAGAGCTGCAGCAG < 41bp 0.435248089196818 0.716910232092088 0.05994454 0.096600115 prediction 0.433820464184176 Functional Gain - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76332439 chr5:76332437 synonymous SNV . 0 19 hm1A_associated_SNPs_20915 0 0 1 1 76332430 76332449 mRNA hsa-miR-371-5p AGGF1 miRanda miRanda
2192 chr2 88485535 88485535 1 + C T UCEC 88485534 + 88485514 88485554 41 GCCCTGGAGCACAAGGAGACACGCTGCACCCTGATGCGGAG GCCCTGGAGCACAAGGAGACATGCTGCACCCTGATGCGGAG < 41bp 0.574131272766463 0.791016933810161 0.6290827 0.60911095 prediction 0.433771322087396 Functional Gain - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88485534 chr2:88485535 nonsynonymous SNV 0.948 3 22 hm1A_associated_SNPs_20917 0 0 0 1 88485513 88485537 mRNA hsa-miR-187 THNSL2 miRanda miRanda
2192 chr12 52282939 52282939 1 + A C STAD 52282941 + 52282921 52282961 41 TTGATGTGAACCAGCAGGACAAAGGAGGGGACACGGCCCTC TTGATGTGAACCAGCAGGCCAAAGGAGGGGACACGGCCCTC < 41bp 0.603880073597248 0.820361423451989 0.15614152 0.1460937 prediction 0.432962699709483 Functional Gain - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52282941 chr12:52282939 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_20989 0 0 0 1 52282918 52282939 mRNA hsa-miR-370 ANKRD33 miRanda miRanda
2192 chr6 53787638 53787638 1 + G T rs41273890 53787637 + 53787617 53787657 41 TGTGTCTTCCTCTGCTGTCGAGACGTTCCTGTCTGCTTCCC TGTGTCTTCCTCTGCTGTCGATACGTTCCTGTCTGCTTCCC < 41bp 0.462935342987641 0.716451409144396 0.31886 0.62225735 prediction 0.432902818288793 Functional Gain - LRRC1 ENSG00000137269 UTR3 Human protein_coding chr6:53787637 chr6:53787638 . . 0 22 hm1A_associated_SNPs_20993 0 0 1 1 53787627 53787648 mRNA hsa-miR-873 LRRC1 miRanda miRanda
2192 chr1 16101280 16101280 1 + C T COAD 16101279 + 16101259 16101299 41 GAACGAGGTGTACTGCCTGGACGACTTCTACAGGTACGAGA GAACGAGGTGTACTGCCTGGATGACTTCTACAGGTACGAGA < 41bp 0.503646921193073 0.72003113532375 0.33577716 0.21975437 prediction 0.432768428261353 Functional Gain - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16101279 chr1:16101280 synonymous SNV . 0 22 hm1A_associated_SNPs_21003 0 0 1 1 16101274 16101291 mRNA hsa-miR-384 FBLIM1 miRanda miRanda
2192 chr8 10555178 10555178 1 + C T SKCM 10555177 + 10555157 10555197 41 ATTACCGGGGCCATTTCAACACCACCCACCTGCTGGCCCTC ATTACCGGGGCCATTTCAACATCACCCACCTGCTGGCCCTC < 41bp 0.578386780980748 0.794732812434927 0.17604092 0.180891 prediction 0.432692062908357 Functional Gain - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10555177 chr8:10555178 nonsynonymous SNV 0.409 0 22 hm1A_associated_SNPs_21008 0 0 0 2 10555171 10555192 mRNA hsa-miR-214 C8orf74 miRanda miRanda
2192 chr8 10555178 10555178 1 + C T SKCM 10555177 + 10555157 10555197 41 ATTACCGGGGCCATTTCAACACCACCCACCTGCTGGCCCTC ATTACCGGGGCCATTTCAACATCACCCACCTGCTGGCCCTC < 41bp 0.578386780980748 0.794732812434927 0.17604092 0.180891 prediction 0.432692062908357 Functional Gain - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10555177 chr8:10555178 nonsynonymous SNV 0.409 0 22 hm1A_associated_SNPs_21008 0 0 0 2 10555158 10555178 mRNA hsa-miR-653 C8orf74 miRanda miRanda
2192 chr14 74729425 74729425 1 + A C rs11848458 74729427 + 74729407 74729447 41 AAGATACAAGTAAGAATAAAATTGACTTAAAAATAGTAGGG AAGATACAAGTAAGAATACAATTGACTTAAAAATAGTAGGG < 41bp 0.467243308494197 0.716211642963333 0.07713482 0.10326803 prediction 0.432423285926667 Functional Gain - VSX2 ENSG00000119614 UTR3 Human protein_coding chr14:74729427 chr14:74729425 . . 0 19 hm1A_associated_SNPs_21025 2 0 0 3 74729412 74729433 mRNA hsa-miR-223 VSX2 miRanda miRanda
2192 chr14 74729425 74729425 1 + A C rs11848458 74729427 + 74729407 74729447 41 AAGATACAAGTAAGAATAAAATTGACTTAAAAATAGTAGGG AAGATACAAGTAAGAATACAATTGACTTAAAAATAGTAGGG < 41bp 0.467243308494197 0.716211642963333 0.07713482 0.10326803 prediction 0.432423285926667 Functional Gain - VSX2 ENSG00000119614 UTR3 Human protein_coding chr14:74729427 chr14:74729425 . . 0 19 hm1A_associated_SNPs_21025 2 0 0 3 74729415 74729434 mRNA hsa-miR-224 VSX2 miRanda miRanda
2192 chr14 74729425 74729425 1 + A C rs11848458 74729427 + 74729407 74729447 41 AAGATACAAGTAAGAATAAAATTGACTTAAAAATAGTAGGG AAGATACAAGTAAGAATACAATTGACTTAAAAATAGTAGGG < 41bp 0.467243308494197 0.716211642963333 0.07713482 0.10326803 prediction 0.432423285926667 Functional Gain - VSX2 ENSG00000119614 UTR3 Human protein_coding chr14:74729427 chr14:74729425 . . 0 19 hm1A_associated_SNPs_21025 2 0 0 3 74729410 74729430 mRNA hsa-miR-590-3p VSX2 miRanda miRanda
2192 chr15 20495404 20495404 1 + T C SKCM 20495406 + 20495386 20495426 41 GTTTCAAGATCTTCTGTGTGAGGAAAATGAATCCACAGCTC GTTTCAAGATCTTCTGTGCGAGGAAAATGAATCCACAGCTC < 41bp 0.540045735438307 0.756247200177742 0.12509239 0.16453493 prediction 0.432402929478871 Functional Gain - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20495406 chr15:20495404 . . 0 19 hm1A_associated_SNPs_21026 0 0 0 2 20495387 20495407 mRNA hsa-miR-377 LOC646096 miRanda miRanda
2192 chr15 20495404 20495404 1 + T C SKCM 20495406 + 20495386 20495426 41 GTTTCAAGATCTTCTGTGTGAGGAAAATGAATCCACAGCTC GTTTCAAGATCTTCTGTGCGAGGAAAATGAATCCACAGCTC < 41bp 0.540045735438307 0.756247200177742 0.12509239 0.16453493 prediction 0.432402929478871 Functional Gain - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20495406 chr15:20495404 . . 0 19 hm1A_associated_SNPs_21026 0 0 0 2 20495385 20495408 mRNA hsa-miR-342-3p LOC646096 miRanda miRanda
2192 chr5 153833002 153833002 1 + A C OV 153833004 + 153832984 153833024 41 TGAACACCCTACGACGTTATAAACGACACTACAAGTTGCAG TGAACACCCTACGACGTTCTAAACGACACTACAAGTTGCAG < 41bp 0.588361059742149 0.804513536734564 0.3345902 0.53203434 prediction 0.432304953984829 Functional Gain - SAP30L ENSG00000164576 CDS Human protein_coding chr5:153833004 chr5:153833002 nonsynonymous SNV 0.399 4 19 hm1A_associated_SNPs_21030 0 0 1 1 153832991 153833016 mRNA hsa-miR-142-3p SAP30L miRanda miRanda
2192 chr3 141644447 141644447 1 + T C UCEC 141644449 + 141644429 141644469 41 TGGGAAAGAAGTAACAGTTGAGTGCAAGATTGATGGATCAG TGGGAAAGAAGTAACAGTCGAGTGCAAGATTGATGGATCAG < 41bp 0.632291397982426 0.84837042806201 0.18381429 0.33930922 prediction 0.432158060159168 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644449 chr3:141644447 synonymous SNV . 0 19 hm1A_associated_SNPs_21036 0 0 1 6 141644436 141644457 mRNA hsa-miR-25 ATP1B3 miRanda miRanda
2192 chr3 141644447 141644447 1 + T C UCEC 141644449 + 141644429 141644469 41 TGGGAAAGAAGTAACAGTTGAGTGCAAGATTGATGGATCAG TGGGAAAGAAGTAACAGTCGAGTGCAAGATTGATGGATCAG < 41bp 0.632291397982426 0.84837042806201 0.18381429 0.33930922 prediction 0.432158060159168 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644449 chr3:141644447 synonymous SNV . 0 19 hm1A_associated_SNPs_21036 0 0 1 6 141644438 141644457 mRNA hsa-miR-32 ATP1B3 miRanda miRanda
2192 chr3 141644447 141644447 1 + T C UCEC 141644449 + 141644429 141644469 41 TGGGAAAGAAGTAACAGTTGAGTGCAAGATTGATGGATCAG TGGGAAAGAAGTAACAGTCGAGTGCAAGATTGATGGATCAG < 41bp 0.632291397982426 0.84837042806201 0.18381429 0.33930922 prediction 0.432158060159168 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644449 chr3:141644447 synonymous SNV . 0 19 hm1A_associated_SNPs_21036 0 0 1 6 141644436 141644457 mRNA hsa-miR-92a ATP1B3 miRanda miRanda
2192 chr3 141644447 141644447 1 + T C UCEC 141644449 + 141644429 141644469 41 TGGGAAAGAAGTAACAGTTGAGTGCAAGATTGATGGATCAG TGGGAAAGAAGTAACAGTCGAGTGCAAGATTGATGGATCAG < 41bp 0.632291397982426 0.84837042806201 0.18381429 0.33930922 prediction 0.432158060159168 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644449 chr3:141644447 synonymous SNV . 0 19 hm1A_associated_SNPs_21036 0 0 1 6 141644436 141644457 mRNA hsa-miR-363 ATP1B3 miRanda miRanda
2192 chr3 141644447 141644447 1 + T C UCEC 141644449 + 141644429 141644469 41 TGGGAAAGAAGTAACAGTTGAGTGCAAGATTGATGGATCAG TGGGAAAGAAGTAACAGTCGAGTGCAAGATTGATGGATCAG < 41bp 0.632291397982426 0.84837042806201 0.18381429 0.33930922 prediction 0.432158060159168 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644449 chr3:141644447 synonymous SNV . 0 19 hm1A_associated_SNPs_21036 0 0 1 6 141644436 141644457 mRNA hsa-miR-367 ATP1B3 miRanda miRanda
2192 chr3 141644447 141644447 1 + T C UCEC 141644449 + 141644429 141644469 41 TGGGAAAGAAGTAACAGTTGAGTGCAAGATTGATGGATCAG TGGGAAAGAAGTAACAGTCGAGTGCAAGATTGATGGATCAG < 41bp 0.632291397982426 0.84837042806201 0.18381429 0.33930922 prediction 0.432158060159168 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644449 chr3:141644447 synonymous SNV . 0 19 hm1A_associated_SNPs_21036 0 0 1 6 141644436 141644457 mRNA hsa-miR-92b ATP1B3 miRanda miRanda
2192 chr17 38144965 38144965 1 + G C CESC 38144967 + 38144947 38144987 41 CTCTGATGATCTGATGCAGAAGATCAGTACTCAGAACCGCC CTCTGATGATCTGATGCACAAGATCAGTACTCAGAACCGCC < 41bp 0.542436437603939 0.758494204879784 0.483487 0.3327776 prediction 0.432115534551691 Functional Gain - PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38144967 chr17:38144965 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_21039 0 0 1 1 38144944 38144968 mRNA hsa-miR-544 PSMD3 miRanda miRanda
2192 chr16 22163841 22163841 1 + T C UCEC 22163843 + 22163823 22163863 41 TCCTTCCAGAGCGGCGGTTGAGTTCCTGAGAAAGCTGGCTT TCCTTCCAGAGCGGCGGTCGAGTTCCTGAGAAAGCTGGCTT < 41bp 0.594840498093298 0.810855183119552 0.44526157 0.7683587 prediction 0.432029370052508 Functional Gain - VWA3A ENSG00000175267 CDS Human protein_coding chr16:22163843 chr16:22163841 synonymous SNV . 0 19 hm1A_associated_SNPs_21047 0 0 0 1 22163832 22163851 mRNA hsa-miR-873 VWA3A miRanda miRanda
2192 chr22 36661600 36661600 1 + G T UCEC 36661599 + 36661579 36661619 41 AAGTGGTGGACACAAGCCCAAGCCCACGACCTGGTCATCAA AAGTGGTGGACACAAGCCCAATCCCACGACCTGGTCATCAA < 41bp 0.531535438849704 0.747387426010497 0.46939364 0.45340726 prediction 0.431703974321586 Functional Gain - APOL1 ENSG00000100342 CDS Human protein_coding chr22:36661599 chr22:36661600 nonsynonymous SNV 0.001 3 22 hm1A_associated_SNPs_21078 0 0 1 1 36661598 36661620 mRNA hsa-miR-758 APOL1 miRanda miRanda
2192 chr1 77510112 77510112 1 + T C UCEC 77510114 + 77510094 77510134 41 GCCATGACCTGCTCAACGTGAGCCAGGGCACCGTGTTCATC GCCATGACCTGCTCAACGCGAGCCAGGGCACCGTGTTCATC < 41bp 0.446570685822357 0.715800831277797 0.30122572 0.41436937 prediction 0.431601662555595 Functional Gain - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77510114 chr1:77510112 nonsynonymous SNV 0.993 0 19 hm1A_associated_SNPs_21086 0 0 0 2 77510096 77510118 mRNA hsa-miR-24 ST6GALNAC5 miRanda miRanda
2192 chr1 77510112 77510112 1 + T C UCEC 77510114 + 77510094 77510134 41 GCCATGACCTGCTCAACGTGAGCCAGGGCACCGTGTTCATC GCCATGACCTGCTCAACGCGAGCCAGGGCACCGTGTTCATC < 41bp 0.446570685822357 0.715800831277797 0.30122572 0.41436937 prediction 0.431601662555595 Functional Gain - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77510114 chr1:77510112 nonsynonymous SNV 0.993 0 19 hm1A_associated_SNPs_21086 0 0 0 2 77510103 77510124 mRNA hsa-miR-874 ST6GALNAC5 miRanda miRanda
2192 chr5 153835472 153835472 1 + C T STAD 153835471 + 153835451 153835491 41 CCCACATAGACTGTGAGTCGACACTTCAGGAACATACCTGT CCCACATAGACTGTGAGTCGATACTTCAGGAACATACCTGT < 41bp 0.548332171193833 0.764001984953143 0.27675837 0.5929597 prediction 0.431339627518619 Functional Gain - SAP30L ENSG00000164576 CDS Human protein_coding chr5:153835471 chr5:153835472 nonsynonymous SNV 1.000 4 22 hm1A_associated_SNPs_21103 0 0 1 2 153835467 153835490 mRNA hsa-miR-196a SAP30L miRanda miRanda
2192 chr5 153835472 153835472 1 + C T STAD 153835471 + 153835451 153835491 41 CCCACATAGACTGTGAGTCGACACTTCAGGAACATACCTGT CCCACATAGACTGTGAGTCGATACTTCAGGAACATACCTGT < 41bp 0.548332171193833 0.764001984953143 0.27675837 0.5929597 prediction 0.431339627518619 Functional Gain - SAP30L ENSG00000164576 CDS Human protein_coding chr5:153835471 chr5:153835472 nonsynonymous SNV 1.000 4 22 hm1A_associated_SNPs_21103 0 0 1 2 153835467 153835490 mRNA hsa-miR-196b SAP30L miRanda miRanda
2192 chr14 75369402 75369402 1 + T C rs536604684 75369403 + 75369383 75369423 41 GACCATGTGATTAAGTTCCTATCTTTTGAAAGTTTGTTCTG GACCATGTGATTAAGTTCCCATCTTTTGAAAGTTTGTTCTG < 41bp 0.532457666082753 0.748095496133904 0.12735245 0.76286113 prediction 0.431275660102301 Functional Gain - DLST ENSG00000119689 UTR3 Human protein_coding chr14:75369403 chr14:75369402 . . 0 20 hm1A_associated_SNPs_21110 0 0 1 1 75369400 75369421 mRNA hsa-miR-495 DLST miRanda miRanda
2192 chr1 1227288 1227288 1 + C T rs549619477 1227287 + 1227267 1227307 41 GTCTGTGTCTGCATGTCCACACGTCTGATGCACCTGTGTAC GTCTGTGTCTGCATGTCCACATGTCTGATGCACCTGTGTAC < 41bp 0.455332395209832 0.715543297736542 0.09090993 0.080168694 prediction 0.431086595473085 Functional Gain - SCNN1D ENSG00000162572 UTR3 Human protein_coding chr1:1227287 chr1:1227288 . . 0 22 hm1A_associated_SNPs_21131 0 0 1 1 1227281 1227303 mRNA hsa-miR-148b SCNN1D miRanda miRanda
2192 chr12 110924408 110924408 1 + C T PRAD 110924407 + 110924387 110924427 41 AACAGCATTACCCTTGCACTACATGGCGACATCAACTGGAG AACAGCATTACCCTTGCACTATATGGCGACATCAACTGGAG < 41bp 0.599994043747811 0.815159530938975 0.17890209 0.2032117 prediction 0.430330974382328 Functional Gain - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110924407 chr12:110924408 nonsynonymous SNV 0.995 3 22 hm1A_associated_SNPs_21193 0 0 1 1 110924401 110924427 mRNA hsa-miR-145 C12orf24 miRanda miRanda
2192 chr1 26142253 26142253 1 + G T rs116931343 26142252 + 26142232 26142272 41 CACAGGCCCCCACGCCTCAGAGCCAGAGTGGTCCTCAGCCC CACAGGCCCCCACGCCTCAGATCCAGAGTGGTCCTCAGCCC < 41bp 0.474000443845012 0.71504211534952 0.23860678 0.23834354 prediction 0.43008423069904 Functional Gain - SELENON ENSG00000162430 UTR3 Human protein_coding chr1:26142252 chr1:26142253 . . 0 22 hm1A_associated_SNPs_21211 1 0 1 1 26142236 26142258 mRNA hsa-miR-149 SEPN1 miRanda miRanda
2192 chr16 72821170 72821170 1 + T C OV 72821172 + 72821152 72821192 41 GTCCGTCGGACTTTTGGCTGAGATCCGTGTCAGACTCCTCC GTCCGTCGGACTTTTGGCCGAGATCCGTGTCAGACTCCTCC < 41bp 0.560455393472211 0.775491880870906 0.81859374 0.8530941 prediction 0.43007297479739 Functional Gain - ZFHX3 ENSG00000140836 CDS Human protein_coding chr16:72821172 chr16:72821170 nonsynonymous SNV 1.000 5 19 hm1A_associated_SNPs_21212 0 0 0 1 72821164 72821191 mRNA hsa-miR-708 HMGN3 miRanda miRanda
2192 chrX 1407766 1407766 1 + A C PRAD 1407768 + 1407748 1407788 41 ACGTCCAGTATTTTTTGTACATACGAAACTCAAAGTAAGTG ACGTCCAGTATTTTTTGTCCATACGAAACTCAAAGTAAGTG < 41bp 0.541352945522435 0.756190786244217 0.20039618 0.85710704 prediction 0.429675681443564 Functional Gain - CSF2RA ENSG00000198223 CDS Human protein_coding chrX:1407768 chrX:1407766 nonsynonymous SNV 0.030 2 19 hm1A_associated_SNPs_21252 0 0 0 1 1407762 1407781 mRNA hsa-miR-9 CSF2RA miRanda miRanda
2192 chr5 162945286 162945286 1 + C T COAD 162945285 + 162945265 162945305 41 GAGACCTTGGGCATTGGCCAACGAACACCATTTCGAATTGG GAGACCTTGGGCATTGGCCAATGAACACCATTTCGAATTGG < 41bp 0.552858871477777 0.767464503028708 0.33713377 0.22515729 prediction 0.429211263101861 Functional Gain - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162945285 chr5:162945286 stopgain 0.994 0 22 hm1A_associated_SNPs_21275 0 0 1 1 162945262 162945286 mRNA hsa-miR-182 MAT2B miRanda miRanda
2192 chr13 48621017 48621017 1 + C T rs542027616 48621016 + 48620996 48621036 41 GATTACAGGTATGAGCCACAACGCCCAGCCATCATTTATCT GATTACAGGTATGAGCCACAATGCCCAGCCATCATTTATCT < 41bp 0.586848298055718 0.801185648930412 0.03522998 0.0316045 prediction 0.428674701749389 Functional Gain - NUDT15 ENSG00000136159 UTR3 Human protein_coding chr13:48621016 chr13:48621017 . . 0 22 hm1A_associated_SNPs_21333 0 0 1 1 48621007 48621029 mRNA hsa-miR-485-5p NUDT15 miRanda miRanda
2192 chrX 48564769 48564769 1 + C T UCEC 48564768 + 48564748 48564788 41 GTACACCGTGGATGCCGCCTACTATGGCAACATCTCCCACT GTACACCGTGGATGCCGCCTATTATGGCAACATCTCCCACT < 41bp 0.594107601729342 0.808311377629604 0.29010978 0.22497448 prediction 0.428407551800525 Functional Gain - SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48564768 chrX:48564769 nonsynonymous SNV . 0 22 hm1A_associated_SNPs_21360 0 0 1 1 48564763 48564785 mRNA hsa-miR-122 SUV39H1 miRanda miRanda
2192 chr22 35812650 35812650 1 + T C LIHC 35812652 + 35812632 35812672 41 CTGGGATCACCACCACCCTGAACTCCCGCTGCTCCGTCCTG CTGGGATCACCACCACCCCGAACTCCCGCTGCTCCGTCCTG < 41bp 0.617886395494439 0.832058207738696 0.5689658 0.6728134 prediction 0.428343624488515 Functional Gain - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35812652 chr22:35812650 nonsynonymous SNV 0.997 4 19 hm1A_associated_SNPs_21365 0 0 1 2 35812650 35812671 mRNA hsa-miR-184 MCM5 miRanda miRanda
2192 chr22 35812650 35812650 1 + T C LIHC 35812652 + 35812632 35812672 41 CTGGGATCACCACCACCCTGAACTCCCGCTGCTCCGTCCTG CTGGGATCACCACCACCCCGAACTCCCGCTGCTCCGTCCTG < 41bp 0.617886395494439 0.832058207738696 0.5689658 0.6728134 prediction 0.428343624488515 Functional Gain - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35812652 chr22:35812650 nonsynonymous SNV 0.997 4 19 hm1A_associated_SNPs_21365 0 0 1 2 35812646 35812665 mRNA hsa-miR-503 MCM5 miRanda miRanda
2192 chr3 179069731 179069731 1 + T C LIHC 179069733 + 179069713 179069753 41 TCGAATAGCCACTGAAGATGATCTGGTAGAAATGCAAGGAT TCGAATAGCCACTGAAGACGATCTGGTAGAAATGCAAGGAT < 41bp 0.644142137543818 0.85829304823271 0.1213412 0.2819394 prediction 0.428301821377784 Functional Gain - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179069733 chr3:179069731 synonymous SNV . 0 19 hm1A_associated_SNPs_21368 0 0 1 1 179069730 179069752 mRNA hsa-miR-205 MFN1 miRanda miRanda
2192 chrX 152772381 152772381 1 + G T COAD 152772380 + 152772360 152772400 41 TTCGCTACTCCAAGCTGTACAGGTGAGGCCAGCAGGGCACC TTCGCTACTCCAAGCTGTACATGTGAGGCCAGCAGGGCACC < 41bp 0.519038240672462 0.733023728216761 0.18077171 0.14754915 prediction 0.427970975088597 Functional Gain - BGN ENSG00000182492 CDS Human protein_coding chrX:152772380 chrX:152772381 nonsynonymous SNV 0.951 3 22 hm1A_associated_SNPs_21391 0 0 0 1 152772364 152772381 mRNA hsa-miR-486-5p BGN miRanda miRanda
2192 chr13 30524474 30524474 1 + G T SARC 30524473 + 30524453 30524493 41 GAAAATGAACATCTGTTTACAGCTTCAATTTTCTAATGATT GAAAATGAACATCTGTTTACATCTTCAATTTTCTAATGATT < 41bp 0.491139906725663 0.713958684010656 0.034310192 0.032387078 prediction 0.427917368021311 Functional Gain - LINC00544 ENSG00000122043 ncRNA_exonic Human lincRNA chr13:30524473 chr13:30524474 . . 0 22 hm1A_associated_SNPs_21395 0 0 0 4 30524458 30524479 mRNA hsa-miR-320a LOC440131 miRanda miRanda
2192 chr13 30524474 30524474 1 + G T SARC 30524473 + 30524453 30524493 41 GAAAATGAACATCTGTTTACAGCTTCAATTTTCTAATGATT GAAAATGAACATCTGTTTACATCTTCAATTTTCTAATGATT < 41bp 0.491139906725663 0.713958684010656 0.034310192 0.032387078 prediction 0.427917368021311 Functional Gain - LINC00544 ENSG00000122043 ncRNA_exonic Human lincRNA chr13:30524473 chr13:30524474 . . 0 22 hm1A_associated_SNPs_21395 0 0 0 4 30524458 30524479 mRNA hsa-miR-320b LOC440131 miRanda miRanda
2192 chr13 30524474 30524474 1 + G T SARC 30524473 + 30524453 30524493 41 GAAAATGAACATCTGTTTACAGCTTCAATTTTCTAATGATT GAAAATGAACATCTGTTTACATCTTCAATTTTCTAATGATT < 41bp 0.491139906725663 0.713958684010656 0.034310192 0.032387078 prediction 0.427917368021311 Functional Gain - LINC00544 ENSG00000122043 ncRNA_exonic Human lincRNA chr13:30524473 chr13:30524474 . . 0 22 hm1A_associated_SNPs_21395 0 0 0 4 30524460 30524479 mRNA hsa-miR-320c LOC440131 miRanda miRanda
2192 chr13 30524474 30524474 1 + G T SARC 30524473 + 30524453 30524493 41 GAAAATGAACATCTGTTTACAGCTTCAATTTTCTAATGATT GAAAATGAACATCTGTTTACATCTTCAATTTTCTAATGATT < 41bp 0.491139906725663 0.713958684010656 0.034310192 0.032387078 prediction 0.427917368021311 Functional Gain - LINC00544 ENSG00000122043 ncRNA_exonic Human lincRNA chr13:30524473 chr13:30524474 . . 0 22 hm1A_associated_SNPs_21395 0 0 0 4 30524461 30524479 mRNA hsa-miR-320d LOC440131 miRanda miRanda
2192 chr8 86352059 86352059 1 + T C LUAD 86352061 + 86352041 86352081 41 GCCATGGTCTGTGTCTTATGATGGTGGCTCTGCCAAGACCA GCCATGGTCTGTGTCTTACGATGGTGGCTCTGCCAAGACCA < 41bp 0.644347556151096 0.857978294811878 0.13798475 0.23987508 prediction 0.427261477321563 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86352061 chr8:86352059 synonymous SNV . 0 19 hm1A_associated_SNPs_21462 0 0 0 4 86352046 86352070 mRNA hsa-miR-29a CA3 miRanda miRanda
2192 chr8 86352059 86352059 1 + T C LUAD 86352061 + 86352041 86352081 41 GCCATGGTCTGTGTCTTATGATGGTGGCTCTGCCAAGACCA GCCATGGTCTGTGTCTTACGATGGTGGCTCTGCCAAGACCA < 41bp 0.644347556151096 0.857978294811878 0.13798475 0.23987508 prediction 0.427261477321563 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86352061 chr8:86352059 synonymous SNV . 0 19 hm1A_associated_SNPs_21462 0 0 0 4 86352045 86352070 mRNA hsa-miR-29b CA3 miRanda miRanda
2192 chr8 86352059 86352059 1 + T C LUAD 86352061 + 86352041 86352081 41 GCCATGGTCTGTGTCTTATGATGGTGGCTCTGCCAAGACCA GCCATGGTCTGTGTCTTACGATGGTGGCTCTGCCAAGACCA < 41bp 0.644347556151096 0.857978294811878 0.13798475 0.23987508 prediction 0.427261477321563 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86352061 chr8:86352059 synonymous SNV . 0 19 hm1A_associated_SNPs_21462 0 0 0 4 86352058 86352080 mRNA hsa-miR-431 CA3 miRanda miRanda
2192 chr8 86352059 86352059 1 + T C LUAD 86352061 + 86352041 86352081 41 GCCATGGTCTGTGTCTTATGATGGTGGCTCTGCCAAGACCA GCCATGGTCTGTGTCTTACGATGGTGGCTCTGCCAAGACCA < 41bp 0.644347556151096 0.857978294811878 0.13798475 0.23987508 prediction 0.427261477321563 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86352061 chr8:86352059 synonymous SNV . 0 19 hm1A_associated_SNPs_21462 0 0 0 4 86352041 86352062 mRNA hsa-miR-376b CA3 miRanda miRanda
2192 chr20 61598777 61598777 1 + C T GBM 61598776 + 61598756 61598796 41 CCTTGTGGCCATCATCAGCAACCTGGGGCTGTGCACCTTCC CCTTGTGGCCATCATCAGCAATCTGGGGCTGTGCACCTTCC < 41bp 0.640785186221141 0.85433501268099 0.10876691 0.09675965 prediction 0.427099652919698 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61598776 chr20:61598777 synonymous SNV . 0 22 hm1A_associated_SNPs_21480 0 0 1 2 61598767 61598795 mRNA hsa-miR-18a SLC17A9 miRanda miRanda
2192 chr20 61598777 61598777 1 + C T GBM 61598776 + 61598756 61598796 41 CCTTGTGGCCATCATCAGCAACCTGGGGCTGTGCACCTTCC CCTTGTGGCCATCATCAGCAATCTGGGGCTGTGCACCTTCC < 41bp 0.640785186221141 0.85433501268099 0.10876691 0.09675965 prediction 0.427099652919698 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61598776 chr20:61598777 synonymous SNV . 0 22 hm1A_associated_SNPs_21480 0 0 1 2 61598774 61598795 mRNA hsa-miR-18b SLC17A9 miRanda miRanda
2192 chr5 176732970 176732970 1 - C A UCEC 176732971 - 176732951 176732991 41 GCTCACCTGGACAGCTCTGGAGACACCAAATAAGCTAGAGG GCTCACCTGGACAGCTCTGGATACACCAAATAAGCTAGAGG < 41bp 0.535801906487542 0.749274302811547 0.28658003 0.19124454 prediction 0.426944792648011 Functional Gain - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176732971 chr5:176732970 synonymous SNV . 0 22 hm1A_associated_SNPs_21498 0 0 1 2 176732955 176732976 mRNA hsa-miR-21 MXD3 miRanda miRanda
2192 chr5 176732970 176732970 1 - C A UCEC 176732971 - 176732951 176732991 41 GCTCACCTGGACAGCTCTGGAGACACCAAATAAGCTAGAGG GCTCACCTGGACAGCTCTGGATACACCAAATAAGCTAGAGG < 41bp 0.535801906487542 0.749274302811547 0.28658003 0.19124454 prediction 0.426944792648011 Functional Gain - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176732971 chr5:176732970 synonymous SNV . 0 22 hm1A_associated_SNPs_21498 0 0 1 2 176732955 176732976 mRNA hsa-miR-590-5p MXD3 miRanda miRanda
2192 chr10 89268224 89268224 1 + G C BLCA 89268226 + 89268206 89268246 41 GCCTTCAAAACTGGACCAGAAATGCAGAACATTTTAAAAAA GCCTTCAAAACTGGACCACAAATGCAGAACATTTTAAAAAA < 41bp 0.501190966331599 0.714621198004646 0.054784417 0.05225879 prediction 0.426860463346094 Functional Gain - MINPP1 ENSG00000107789 CDS Human protein_coding chr10:89268226 chr10:89268224 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_21504 0 0 1 1 89268213 89268235 mRNA hsa-miR-544 MINPP1 miRanda miRanda
2192 chr4 151119234 151119234 1 + C T UCEC 151119233 + 151119213 151119253 41 AAAAGCCCTGGGCCCTCTCGACGCAGCAAATCACCAGCTTC AAAAGCCCTGGGCCCTCTCGATGCAGCAAATCACCAGCTTC < 41bp 0.574003866138241 0.787169011794511 0.16386676 0.17690676 prediction 0.42633029131254 Functional Gain - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151119233 chr4:151119234 nonsynonymous SNV 0.999 4 22 hm1A_associated_SNPs_21555 0 0 0 2 151119221 151119241 mRNA hsa-miR-210 DCLK2 miRanda miRanda
2192 chr4 151119234 151119234 1 + C T UCEC 151119233 + 151119213 151119253 41 AAAAGCCCTGGGCCCTCTCGACGCAGCAAATCACCAGCTTC AAAAGCCCTGGGCCCTCTCGATGCAGCAAATCACCAGCTTC < 41bp 0.574003866138241 0.787169011794511 0.16386676 0.17690676 prediction 0.42633029131254 Functional Gain - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151119233 chr4:151119234 nonsynonymous SNV 0.999 4 22 hm1A_associated_SNPs_21555 0 0 0 2 151119226 151119251 mRNA hsa-miR-138 DCLK2 miRanda miRanda
2192 chr19 14827010 14827010 1 + A C rs201611145 14827012 + 14826992 14827032 41 TCAGAGGAGCCTGTATAGAGATGTGATGCTGGAGAACTACA TCAGAGGAGCCTGTATAGCGATGTGATGCTGGAGAACTACA < 41bp 0.585831212394165 0.798956049302138 0.130447 0.22401905 prediction 0.426249673815946 Functional Gain - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14827012 chr19:14827010 nonsynonymous SNV 0.984 1 19 hm1A_associated_SNPs_21562 0 0 1 1 14827004 14827024 mRNA hsa-miR-338-3p ZNF333 miRanda miRanda
2192 chr19 15740220 15740220 1 + C T rs4239614 15740219 + 15740199 15740239 41 CATCACCTACCTTTGCACCAACTACCTTTTCAGATTTCCGG CATCACCTACCTTTGCACCAATTACCTTTTCAGATTTCCGG < 41bp 0.519590529553203 0.732686892460839 0.09424716 0.08938578 prediction 0.426192725815272 Functional Gain - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15740219 chr19:15740220 . . 0 22 hm1A_associated_SNPs_21569 0 0 0 2 15740205 15740226 mRNA hsa-miR-196a CYP4F8 miRanda miRanda
2192 chr19 15740220 15740220 1 + C T rs4239614 15740219 + 15740199 15740239 41 CATCACCTACCTTTGCACCAACTACCTTTTCAGATTTCCGG CATCACCTACCTTTGCACCAATTACCTTTTCAGATTTCCGG < 41bp 0.519590529553203 0.732686892460839 0.09424716 0.08938578 prediction 0.426192725815272 Functional Gain - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15740219 chr19:15740220 . . 0 22 hm1A_associated_SNPs_21569 0 0 0 2 15740205 15740226 mRNA hsa-miR-196b CYP4F8 miRanda miRanda
2192 chr19 41622101 41622101 1 + G T UCEC 41622100 + 41622080 41622120 41 CAGCTGCCTTCACCATGGACAGCATAAGCACAGCCATCTTA CAGCTGCCTTCACCATGGACATCATAAGCACAGCCATCTTA < 41bp 0.540334003401475 0.75333590859213 0.27303788 0.28043854 prediction 0.426003810381309 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622100 chr19:41622101 nonsynonymous SNV 0.036 0 22 hm1A_associated_SNPs_21587 0 0 0 1 41622092 41622112 mRNA hsa-miR-218 CYP2F1 miRanda miRanda
2192 chr8 136659260 136659260 1 + G T UCEC 136659259 + 136659239 136659279 41 AAGAAGAGTGGACTAACTCAAGACACAAGGCACCTTCAGCG AAGAAGAGTGGACTAACTCAATACACAAGGCACCTTCAGCG < 41bp 0.538134840319424 0.751099227677704 0.43992788 0.3129525 prediction 0.425928774716561 Functional Gain - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136659259 chr8:136659260 nonsynonymous SNV 0.996 3 22 hm1A_associated_SNPs_21592 0 0 0 4 136659255 136659275 mRNA hsa-miR-18a KHDRBS3 miRanda miRanda
2192 chr8 136659260 136659260 1 + G T UCEC 136659259 + 136659239 136659279 41 AAGAAGAGTGGACTAACTCAAGACACAAGGCACCTTCAGCG AAGAAGAGTGGACTAACTCAATACACAAGGCACCTTCAGCG < 41bp 0.538134840319424 0.751099227677704 0.43992788 0.3129525 prediction 0.425928774716561 Functional Gain - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136659259 chr8:136659260 nonsynonymous SNV 0.996 3 22 hm1A_associated_SNPs_21592 0 0 0 4 136659244 136659266 mRNA hsa-miR-218 KHDRBS3 miRanda miRanda
2192 chr8 136659260 136659260 1 + G T UCEC 136659259 + 136659239 136659279 41 AAGAAGAGTGGACTAACTCAAGACACAAGGCACCTTCAGCG AAGAAGAGTGGACTAACTCAATACACAAGGCACCTTCAGCG < 41bp 0.538134840319424 0.751099227677704 0.43992788 0.3129525 prediction 0.425928774716561 Functional Gain - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136659259 chr8:136659260 nonsynonymous SNV 0.996 3 22 hm1A_associated_SNPs_21592 0 0 0 4 136659255 136659275 mRNA hsa-miR-18b KHDRBS3 miRanda miRanda
2192 chr8 136659260 136659260 1 + G T UCEC 136659259 + 136659239 136659279 41 AAGAAGAGTGGACTAACTCAAGACACAAGGCACCTTCAGCG AAGAAGAGTGGACTAACTCAATACACAAGGCACCTTCAGCG < 41bp 0.538134840319424 0.751099227677704 0.43992788 0.3129525 prediction 0.425928774716561 Functional Gain - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136659259 chr8:136659260 nonsynonymous SNV 0.996 3 22 hm1A_associated_SNPs_21592 0 0 0 4 136659245 136659267 mRNA hsa-miR-599 KHDRBS3 miRanda miRanda
2192 chr19 41627408 41627408 1 + A C rs140643766 41627410 + 41627390 41627430 41 TGAGTCGCTCAGTGTCCAACATTATCTGTTCCGTGCTCTTC TGAGTCGCTCAGTGTCCACCATTATCTGTTCCGTGCTCTTC < 41bp 0.653681262757873 0.866494056642791 0.2419731 0.7799149 prediction 0.425625587769837 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41627410 chr19:41627408 nonsynonymous SNV 0.963 3 19 hm1A_associated_SNPs_21621 0 0 0 2 41627395 41627416 mRNA hsa-miR-190 CYP2F1 miRanda miRanda
2192 chr19 41627408 41627408 1 + A C rs140643766 41627410 + 41627390 41627430 41 TGAGTCGCTCAGTGTCCAACATTATCTGTTCCGTGCTCTTC TGAGTCGCTCAGTGTCCACCATTATCTGTTCCGTGCTCTTC < 41bp 0.653681262757873 0.866494056642791 0.2419731 0.7799149 prediction 0.425625587769837 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41627410 chr19:41627408 nonsynonymous SNV 0.963 3 19 hm1A_associated_SNPs_21621 0 0 0 2 41627395 41627416 mRNA hsa-miR-190b CYP2F1 miRanda miRanda
2192 chrX 70679518 70679518 1 + A C UCEC 70679520 + 70679500 70679540 41 AGGAGAAGATGATGAGGAAGATGCTGGGAGTGATGAAGAAG AGGAGAAGATGATGAGGACGATGCTGGGAGTGATGAAGAAG < 41bp 0.580674811973682 0.793439779928072 0.2401804 0.3625594 prediction 0.425529935908779 Functional Gain - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70679520 chrX:70679518 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_21624 0 0 1 1 70679506 70679527 mRNA hsa-miR-338-3p DYT3 miRanda miRanda
2192 chr5 80369245 80369245 1 + C T UCEC 80369244 + 80369224 80369264 41 GAAGCCCCCCATCAGCCACGACGACGTCAGCAGTATTTTTC GAAGCCCCCCATCAGCCACGATGACGTCAGCAGTATTTTTC < 41bp 0.479281949021535 0.712738561082195 0.16387257 0.23289394 prediction 0.425477122164391 Functional Gain - RASGRF2 ENSG00000113319 CDS Human protein_coding chr5:80369244 chr5:80369245 synonymous SNV . 0 22 hm1A_associated_SNPs_21627 0 0 0 3 80369241 80369261 mRNA hsa-miR-200b RASGRF2 miRanda miRanda
2192 chr5 80369245 80369245 1 + C T UCEC 80369244 + 80369224 80369264 41 GAAGCCCCCCATCAGCCACGACGACGTCAGCAGTATTTTTC GAAGCCCCCCATCAGCCACGATGACGTCAGCAGTATTTTTC < 41bp 0.479281949021535 0.712738561082195 0.16387257 0.23289394 prediction 0.425477122164391 Functional Gain - RASGRF2 ENSG00000113319 CDS Human protein_coding chr5:80369244 chr5:80369245 synonymous SNV . 0 22 hm1A_associated_SNPs_21627 0 0 0 3 80369238 80369261 mRNA hsa-miR-200c RASGRF2 miRanda miRanda
2192 chr5 80369245 80369245 1 + C T UCEC 80369244 + 80369224 80369264 41 GAAGCCCCCCATCAGCCACGACGACGTCAGCAGTATTTTTC GAAGCCCCCCATCAGCCACGATGACGTCAGCAGTATTTTTC < 41bp 0.479281949021535 0.712738561082195 0.16387257 0.23289394 prediction 0.425477122164391 Functional Gain - RASGRF2 ENSG00000113319 CDS Human protein_coding chr5:80369244 chr5:80369245 synonymous SNV . 0 22 hm1A_associated_SNPs_21627 0 0 0 3 80369241 80369261 mRNA hsa-miR-429 RASGRF2 miRanda miRanda
2192 chr8 24200629 24200629 1 + G C STAD 24200631 + 24200611 24200651 41 CAGGTTTGCATTAATGCAGAATGTGTGGATATTGAGAAAGC CAGGTTTGCATTAATGCACAATGTGTGGATATTGAGAAAGC < 41bp 0.555960687132072 0.768515571927985 0.06398019 0.04757774 prediction 0.425109769591827 Functional Gain - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24200631 chr8:24200629 nonsynonymous SNV 0.997 1 19 hm1A_associated_SNPs_21663 0 0 0 1 24200614 24200632 mRNA hsa-miR-544 ADAM28 miRanda miRanda
2192 chr20 62326237 62326237 1 + G T ESCA 62326236 + 62326216 62326256 41 CAACTCTTGGCAGCGCTGACAGCCTATAAGCAAGACGACGA CAACTCTTGGCAGCGCTGACATCCTATAAGCAAGACGACGA < 41bp 0.493052929905025 0.712546492775798 0.53169715 0.44488928 prediction 0.425092985551595 Functional Gain - RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62326236 chr20:62326237 nonsynonymous SNV 0.017 0 22 hm1A_associated_SNPs_21664 0 0 1 2 62326235 62326256 mRNA hsa-miR-187 RTEL1 miRanda miRanda
2192 chr20 62326237 62326237 1 + G T ESCA 62326236 + 62326216 62326256 41 CAACTCTTGGCAGCGCTGACAGCCTATAAGCAAGACGACGA CAACTCTTGGCAGCGCTGACATCCTATAAGCAAGACGACGA < 41bp 0.493052929905025 0.712546492775798 0.53169715 0.44488928 prediction 0.425092985551595 Functional Gain - RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62326236 chr20:62326237 nonsynonymous SNV 0.017 0 22 hm1A_associated_SNPs_21664 0 0 1 2 62326228 62326252 mRNA hsa-miR-431 RTEL1 miRanda miRanda
2192 chr13 50080790 50080790 1 + A C UCEC 50080792 + 50080772 50080812 41 TGTCTTTCAGGTTGCAGAAAAGATGGAAAAAAGGACATGTG TGTCTTTCAGGTTGCAGACAAGATGGAAAAAAGGACATGTG < 41bp 0.540327102568762 0.752674544510642 0.14394853 0.15114465 prediction 0.42469488388376 Functional Gain - PHF11;SETDB2-PHF11 ENSG00000136147 CDS Human protein_coding chr13:50080792 chr13:50080790 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_21705 0 0 0 1 50080772 50080791 mRNA hsa-miR-544 PHF11 miRanda miRanda
2192 chr22 21822654 21822654 1 + C T UCEC 21822653 + 21822633 21822673 41 CCGCCCCTAGCTCTTCTACTACGGAGGGGAACTGCAGAGCC CCGCCCCTAGCTCTTCTACTATGGAGGGGAACTGCAGAGCC < 41bp 0.584319987127035 0.796623254927552 0.5692593 0.4930771 prediction 0.424606535601033 Functional Gain - TMEM191C ENSG00000206140 ncRNA_exonic Human protein_coding chr22:21822653 chr22:21822654 . . 0 22 hm1A_associated_SNPs_21711 0 0 0 1 21822654 21822676 mRNA hsa-miR-149 TMEM191C miRanda miRanda
2192 chr16 57060249 57060249 1 + T C STAD 57060251 + 57060231 57060271 41 ACCTGGGGGAGGTGGCCCTGAGGGGCCTGGAGACAGGGAAG ACCTGGGGGAGGTGGCCCCGAGGGGCCTGGAGACAGGGAAG < 41bp 0.570594559488452 0.782845887767752 0.20404783 0.26196516 prediction 0.424502656558599 Functional Gain - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57060251 chr16:57060249 nonsynonymous SNV 0.875 4 19 hm1A_associated_SNPs_21717 0 0 0 1 57060247 57060269 mRNA hsa-miR-339-5p NLRC5 miRanda miRanda
2192 chr14 91642315 91642315 1 + C T COAD 91642314 + 91642294 91642334 41 AGAGCTTTCCAAACCTGCCTACGGGGATGCCATGGTGTGTC AGAGCTTTCCAAACCTGCCTATGGGGATGCCATGGTGTGTC < 41bp 0.564963695308682 0.777015505889319 0.13342482 0.12309593 prediction 0.424103621161274 Functional Gain - C14orf159 ENSG00000133943 CDS Human protein_coding chr14:91642314 chr14:91642315 synonymous SNV . 0 22 hm1A_associated_SNPs_21745 0 0 1 3 91642314 91642334 mRNA hsa-miR-362-3p C14orf159 miRanda miRanda
2192 chr14 91642315 91642315 1 + C T COAD 91642314 + 91642294 91642334 41 AGAGCTTTCCAAACCTGCCTACGGGGATGCCATGGTGTGTC AGAGCTTTCCAAACCTGCCTATGGGGATGCCATGGTGTGTC < 41bp 0.564963695308682 0.777015505889319 0.13342482 0.12309593 prediction 0.424103621161274 Functional Gain - C14orf159 ENSG00000133943 CDS Human protein_coding chr14:91642314 chr14:91642315 synonymous SNV . 0 22 hm1A_associated_SNPs_21745 0 0 1 3 91642299 91642324 mRNA hsa-miR-324-5p C14orf159 miRanda miRanda
2192 chr14 91642315 91642315 1 + C T COAD 91642314 + 91642294 91642334 41 AGAGCTTTCCAAACCTGCCTACGGGGATGCCATGGTGTGTC AGAGCTTTCCAAACCTGCCTATGGGGATGCCATGGTGTGTC < 41bp 0.564963695308682 0.777015505889319 0.13342482 0.12309593 prediction 0.424103621161274 Functional Gain - C14orf159 ENSG00000133943 CDS Human protein_coding chr14:91642314 chr14:91642315 synonymous SNV . 0 22 hm1A_associated_SNPs_21745 0 0 1 3 91642313 91642334 mRNA hsa-miR-329 C14orf159 miRanda miRanda
2192 chr21 35562152 35562152 1 + T C rs62213694 35562154 + 35562134 35562174 41 CCCCTTTGCCCTCCTCCATGATTGTAAGTTTCCTGAGGCCT CCCCTTTGCCCTCCTCCACGATTGTAAGTTTCCTGAGGCCT < 41bp 0.476373386760913 0.711933255110318 0.17793381 0.4288717 prediction 0.423866510220635 Functional Gain - LINC00310 ENSG00000227456 ncRNA_exonic Human lincRNA chr21:35562154 chr21:35562152 . . 0 19 hm1A_associated_SNPs_21771 0 0 0 1 35562149 35562169 mRNA hsa-miR-873 C21orf82 miRanda miRanda
2192 chr1 235599908 235599908 1 + C T UCEC 235599907 + 235599887 235599927 41 GAAGTACCTGGTAGTAAACGACAATCAGATATCACAAGTAA GAAGTACCTGGTAGTAAACGATAATCAGATATCACAAGTAA < 41bp 0.542198496888419 0.75409723970723 0.20356533 0.35339665 prediction 0.42379748563762 Functional Gain - TBCE ENSG00000116957 CDS Human protein_coding chr1:235599907 chr1:235599908 synonymous SNV . 0 22 hm1A_associated_SNPs_21775 0 0 1 1 235599893 235599913 mRNA hsa-miR-219-5p TBCE miRanda miRanda
2192 chr15 81517774 81517774 1 + A C UCEC 81517776 + 81517756 81517796 41 CGCGCTGGAAAGAGCAGAAAATCTGCAAAATTTCGGTCCAT CGCGCTGGAAAGAGCAGACAATCTGCAAAATTTCGGTCCAT < 41bp 0.465561649942154 0.71164415829814 0.14237237 0.19298953 prediction 0.42328831659628 Functional Gain - IL16 ENSG00000172349 CDS Human protein_coding chr15:81517776 chr15:81517774 nonsynonymous SNV 0.404 3 19 hm1A_associated_SNPs_21827 0 0 0 1 81517763 81517785 mRNA hsa-miR-450a IL16 miRanda miRanda
2192 chr10 50901855 50901855 1 + G T UCS 50901854 + 50901834 50901874 41 GATGGACATGAGGTCATCCTAGAGAAGATAGAAGACTGGAA GATGGACATGAGGTCATCCTATAGAAGATAGAAGACTGGAA < 41bp 0.495445343450771 0.71160566167449 0.24227735 0.2267201 prediction 0.423211323348981 Functional Gain - C10orf53 ENSG00000178645 CDS Human protein_coding chr10:50901854 chr10:50901855 stopgain 0.969 0 22 hm1A_associated_SNPs_21837 0 0 0 1 50901852 50901874 mRNA hsa-miR-145 CHAT miRanda miRanda
2192 chr5 153149816 153149816 1 + T C LIHC 153149818 + 153149798 153149838 41 GGACCACAGAGGAGGGGATGATTCGAGTGAGGAAATCCAAA GGACCACAGAGGAGGGGACGATTCGAGTGAGGAAATCCAAA < 41bp 0.649530313868307 0.860931735166725 0.17448089 0.32156867 prediction 0.422802842596838 Functional Gain - GRIA1 ENSG00000155511 CDS Human protein_coding chr5:153149818 chr5:153149816 nonsynonymous SNV 0.996 2 19 hm1A_associated_SNPs_21870 0 0 0 2 153149816 153149840 mRNA hsa-miR-9 GRIA1 miRanda miRanda
2192 chr5 153149816 153149816 1 + T C LIHC 153149818 + 153149798 153149838 41 GGACCACAGAGGAGGGGATGATTCGAGTGAGGAAATCCAAA GGACCACAGAGGAGGGGACGATTCGAGTGAGGAAATCCAAA < 41bp 0.649530313868307 0.860931735166725 0.17448089 0.32156867 prediction 0.422802842596838 Functional Gain - GRIA1 ENSG00000155511 CDS Human protein_coding chr5:153149818 chr5:153149816 nonsynonymous SNV 0.996 2 19 hm1A_associated_SNPs_21870 0 0 0 2 153149813 153149836 mRNA hsa-miR-876-5p GRIA1 miRanda miRanda
2192 chr22 21363670 21363670 1 + C T UCEC 21363669 + 21363649 21363689 41 GCCGCTTCATGAGCAGAGACACGAACCCAGAGCCAGTGCCG GCCGCTTCATGAGCAGAGACATGAACCCAGAGCCAGTGCCG < 41bp 0.553730502498521 0.765125602203141 0.69822836 0.65397584 prediction 0.422790199409241 Functional Gain - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363669 chr22:21363670 . . 0 22 hm1A_associated_SNPs_21872 0 0 0 4 21363649 21363672 mRNA hsa-miR-187 FLJ39582 miRanda miRanda
2192 chr22 21363670 21363670 1 + C T UCEC 21363669 + 21363649 21363689 41 GCCGCTTCATGAGCAGAGACACGAACCCAGAGCCAGTGCCG GCCGCTTCATGAGCAGAGACATGAACCCAGAGCCAGTGCCG < 41bp 0.553730502498521 0.765125602203141 0.69822836 0.65397584 prediction 0.422790199409241 Functional Gain - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363669 chr22:21363670 . . 0 22 hm1A_associated_SNPs_21872 0 0 0 4 21363662 21363685 mRNA hsa-miR-149 FLJ39582 miRanda miRanda
2192 chr22 21363670 21363670 1 + C T UCEC 21363669 + 21363649 21363689 41 GCCGCTTCATGAGCAGAGACACGAACCCAGAGCCAGTGCCG GCCGCTTCATGAGCAGAGACATGAACCCAGAGCCAGTGCCG < 41bp 0.553730502498521 0.765125602203141 0.69822836 0.65397584 prediction 0.422790199409241 Functional Gain - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363669 chr22:21363670 . . 0 22 hm1A_associated_SNPs_21872 0 0 0 4 21363660 21363681 mRNA hsa-miR-330-5p FLJ39582 miRanda miRanda
2192 chr22 21363670 21363670 1 + C T UCEC 21363669 + 21363649 21363689 41 GCCGCTTCATGAGCAGAGACACGAACCCAGAGCCAGTGCCG GCCGCTTCATGAGCAGAGACATGAACCCAGAGCCAGTGCCG < 41bp 0.553730502498521 0.765125602203141 0.69822836 0.65397584 prediction 0.422790199409241 Functional Gain - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363669 chr22:21363670 . . 0 22 hm1A_associated_SNPs_21872 0 0 0 4 21363661 21363681 mRNA hsa-miR-326 FLJ39582 miRanda miRanda
2192 chr10 32745187 32745187 1 + T C UCEC 32745189 + 32745169 32745209 41 TTTTCAAAAGGTTGGGGATGATATGAATTCATTCTTGACAT TTTTCAAAAGGTTGGGGACGATATGAATTCATTCTTGACAT < 41bp 0.429915037046753 0.711256531135139 0.07120606 0.14767286 prediction 0.422513062270279 Functional Gain - CCDC7 ENSG00000216937 CDS Human protein_coding chr10:32745189 chr10:32745187 synonymous SNV . 0 19 hm1A_associated_SNPs_21902 0 0 0 1 32745185 32745206 mRNA hsa-miR-186 CCDC7 miRanda miRanda
2192 chr20 17968837 17968837 1 + A C UCEC 17968839 + 17968819 17968859 41 TGTGTGATTGATTGGAAGACATCAGAGAAACCAAAGCCTTT TGTGTGATTGATTGGAAGCCATCAGAGAAACCAAAGCCTTT < 41bp 0.636966214255377 0.848108786018896 0.080123395 0.6883841 prediction 0.422285143527038 Functional Gain - MGME1 ENSG00000125871 CDS Human protein_coding chr20:17968839 chr20:17968837 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_21937 0 0 1 1 17968833 17968855 mRNA hsa-miR-9 C20orf72 miRanda miRanda
2192 chr10 38652451 38652451 1 + T C ESCA 38652453 + 38652433 38652473 41 TCATATGTTCTCCACAGCTGAAGGCCTGCTGACCCAGGGTG TCATATGTTCTCCACAGCCGAAGGCCTGCTGACCCAGGGTG < 41bp 0.478762927936199 0.711138214045922 0.13433921 0.18110469 prediction 0.422276428091843 Functional Gain - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38652453 chr10:38652451 . . 0 19 hm1A_associated_SNPs_21938 0 0 0 1 38652443 38652464 mRNA hsa-miR-214 HSD17B7P2 miRanda miRanda
2192 chr11 117040724 117040724 1 + T C rs11540101 117040725 + 117040705 117040745 41 ATTTTATATCTACCAGAGCTATTCAAGCAATAGTATTTGAA ATTTTATATCTACCAGAGCCATTCAAGCAATAGTATTTGAA < 41bp 0.503840818902333 0.714953771479407 0.03412819 0.3760853 prediction 0.422225905154149 Functional Gain - PAFAH1B2 ENSG00000168092 UTR3 Human protein_coding chr11:117040725 chr11:117040724 . . 0 20 hm1A_associated_SNPs_21942 0 0 1 1 117040718 117040737 mRNA hsa-miR-137 PAFAH1B2 miRanda miRanda
2192 chr12 53512168 53512168 1 + C T PRAD 53512167 + 53512147 53512187 41 GGCCCCCAGTTTCTCCAGCTACCTCTACTTCCTCTTCTGCC GGCCCCCAGTTTCTCCAGCTATCTCTACTTCCTCTTCTGCC < 41bp 0.632223396079552 0.843278135654457 0.16194147 0.14721003 prediction 0.422109479149809 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53512167 chr12:53512168 synonymous SNV . 0 22 hm1A_associated_SNPs_21959 0 0 1 9 53512151 53512172 mRNA hsa-let-7a SOAT2 miRanda miRanda
2192 chr12 53512168 53512168 1 + C T PRAD 53512167 + 53512147 53512187 41 GGCCCCCAGTTTCTCCAGCTACCTCTACTTCCTCTTCTGCC GGCCCCCAGTTTCTCCAGCTATCTCTACTTCCTCTTCTGCC < 41bp 0.632223396079552 0.843278135654457 0.16194147 0.14721003 prediction 0.422109479149809 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53512167 chr12:53512168 synonymous SNV . 0 22 hm1A_associated_SNPs_21959 0 0 1 9 53512151 53512172 mRNA hsa-let-7b SOAT2 miRanda miRanda
2192 chr12 53512168 53512168 1 + C T PRAD 53512167 + 53512147 53512187 41 GGCCCCCAGTTTCTCCAGCTACCTCTACTTCCTCTTCTGCC GGCCCCCAGTTTCTCCAGCTATCTCTACTTCCTCTTCTGCC < 41bp 0.632223396079552 0.843278135654457 0.16194147 0.14721003 prediction 0.422109479149809 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53512167 chr12:53512168 synonymous SNV . 0 22 hm1A_associated_SNPs_21959 0 0 1 9 53512150 53512172 mRNA hsa-let-7c SOAT2 miRanda miRanda
2192 chr12 53512168 53512168 1 + C T PRAD 53512167 + 53512147 53512187 41 GGCCCCCAGTTTCTCCAGCTACCTCTACTTCCTCTTCTGCC GGCCCCCAGTTTCTCCAGCTATCTCTACTTCCTCTTCTGCC < 41bp 0.632223396079552 0.843278135654457 0.16194147 0.14721003 prediction 0.422109479149809 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53512167 chr12:53512168 synonymous SNV . 0 22 hm1A_associated_SNPs_21959 0 0 1 9 53512151 53512172 mRNA hsa-let-7d SOAT2 miRanda miRanda
2192 chr12 53512168 53512168 1 + C T PRAD 53512167 + 53512147 53512187 41 GGCCCCCAGTTTCTCCAGCTACCTCTACTTCCTCTTCTGCC GGCCCCCAGTTTCTCCAGCTATCTCTACTTCCTCTTCTGCC < 41bp 0.632223396079552 0.843278135654457 0.16194147 0.14721003 prediction 0.422109479149809 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53512167 chr12:53512168 synonymous SNV . 0 22 hm1A_associated_SNPs_21959 0 0 1 9 53512151 53512172 mRNA hsa-let-7e SOAT2 miRanda miRanda
2192 chr12 53512168 53512168 1 + C T PRAD 53512167 + 53512147 53512187 41 GGCCCCCAGTTTCTCCAGCTACCTCTACTTCCTCTTCTGCC GGCCCCCAGTTTCTCCAGCTATCTCTACTTCCTCTTCTGCC < 41bp 0.632223396079552 0.843278135654457 0.16194147 0.14721003 prediction 0.422109479149809 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53512167 chr12:53512168 synonymous SNV . 0 22 hm1A_associated_SNPs_21959 0 0 1 9 53512151 53512172 mRNA hsa-let-7f SOAT2 miRanda miRanda
2192 chr12 53512168 53512168 1 + C T PRAD 53512167 + 53512147 53512187 41 GGCCCCCAGTTTCTCCAGCTACCTCTACTTCCTCTTCTGCC GGCCCCCAGTTTCTCCAGCTATCTCTACTTCCTCTTCTGCC < 41bp 0.632223396079552 0.843278135654457 0.16194147 0.14721003 prediction 0.422109479149809 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53512167 chr12:53512168 synonymous SNV . 0 22 hm1A_associated_SNPs_21959 0 0 1 9 53512151 53512172 mRNA hsa-miR-98 SOAT2 miRanda miRanda
2192 chr12 53512168 53512168 1 + C T PRAD 53512167 + 53512147 53512187 41 GGCCCCCAGTTTCTCCAGCTACCTCTACTTCCTCTTCTGCC GGCCCCCAGTTTCTCCAGCTATCTCTACTTCCTCTTCTGCC < 41bp 0.632223396079552 0.843278135654457 0.16194147 0.14721003 prediction 0.422109479149809 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53512167 chr12:53512168 synonymous SNV . 0 22 hm1A_associated_SNPs_21959 0 0 1 9 53512151 53512172 mRNA hsa-let-7g SOAT2 miRanda miRanda
2192 chr12 53512168 53512168 1 + C T PRAD 53512167 + 53512147 53512187 41 GGCCCCCAGTTTCTCCAGCTACCTCTACTTCCTCTTCTGCC GGCCCCCAGTTTCTCCAGCTATCTCTACTTCCTCTTCTGCC < 41bp 0.632223396079552 0.843278135654457 0.16194147 0.14721003 prediction 0.422109479149809 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53512167 chr12:53512168 synonymous SNV . 0 22 hm1A_associated_SNPs_21959 0 0 1 9 53512151 53512172 mRNA hsa-let-7i SOAT2 miRanda miRanda
2192 chr3 195438480 195438480 1 + A C rs2641761 195438482 + 195438462 195438502 41 TCCCAGGAATGCCATTCAACATGGCTGTGAGGAGAATAAAG TCCCAGGAATGCCATTCACCATGGCTGTGAGGAGAATAAAG < 41bp 0.566426835376585 0.777460919785637 0.2849639 0.8133669 prediction 0.422068168818104 Functional Gain - LINC00969 ENSG00000242086 ncRNA_exonic Human lincRNA chr3:195438482 chr3:195438480 . . 0 19 hm1A_associated_SNPs_21965 0 0 1 1 195438461 195438483 mRNA hsa-miR-653 LOC440993 miRanda miRanda
2192 chr1 207073696 207073696 1 + C T UCEC 207073695 + 207073675 207073715 41 GCAGCAGGAGGTTCTGCAGAACGTCTCGGTAATCAGACCTC GCAGCAGGAGGTTCTGCAGAATGTCTCGGTAATCAGACCTC < 41bp 0.504533613260338 0.715352284562386 0.26604405 0.2754389 prediction 0.421637342604096 Functional Gain - IL24 ENSG00000162892 CDS Human protein_coding chr1:207073695 chr1:207073696 nonsynonymous SNV 0.727 0 22 hm1A_associated_SNPs_21997 0 0 0 2 207073696 207073702 mRNA hsa-miR-181d IL24 miRanda miRanda
2192 chr1 207073696 207073696 1 + C T UCEC 207073695 + 207073675 207073715 41 GCAGCAGGAGGTTCTGCAGAACGTCTCGGTAATCAGACCTC GCAGCAGGAGGTTCTGCAGAATGTCTCGGTAATCAGACCTC < 41bp 0.504533613260338 0.715352284562386 0.26604405 0.2754389 prediction 0.421637342604096 Functional Gain - IL24 ENSG00000162892 CDS Human protein_coding chr1:207073695 chr1:207073696 nonsynonymous SNV 0.727 0 22 hm1A_associated_SNPs_21997 0 0 0 2 207073675 207073696 mRNA hsa-miR-544 IL24 miRanda miRanda
2192 chr2 121050787 121050787 1 + A C UCEC 121050789 + 121050769 121050809 41 AAGACAAGAATGGCAAGAAAAGCAGCAAGAACAAGAAAAGT AAGACAAGAATGGCAAGACAAGCAGCAAGAACAAGAAAAGT < 41bp 0.576048201432101 0.786860190796944 0.23927367 0.18265414 prediction 0.421623978729686 Functional Gain - RALB ENSG00000144118 CDS Human protein_coding chr2:121050789 chr2:121050787 nonsynonymous SNV 1.000 0 19 hm1A_associated_SNPs_22000 0 0 0 4 121050776 121050796 mRNA hsa-miR-218 RALB miRanda miRanda
2192 chr2 121050787 121050787 1 + A C UCEC 121050789 + 121050769 121050809 41 AAGACAAGAATGGCAAGAAAAGCAGCAAGAACAAGAAAAGT AAGACAAGAATGGCAAGACAAGCAGCAAGAACAAGAAAAGT < 41bp 0.576048201432101 0.786860190796944 0.23927367 0.18265414 prediction 0.421623978729686 Functional Gain - RALB ENSG00000144118 CDS Human protein_coding chr2:121050789 chr2:121050787 nonsynonymous SNV 1.000 0 19 hm1A_associated_SNPs_22000 0 0 0 4 121050782 121050803 mRNA hsa-miR-375 RALB miRanda miRanda
2192 chr2 121050787 121050787 1 + A C UCEC 121050789 + 121050769 121050809 41 AAGACAAGAATGGCAAGAAAAGCAGCAAGAACAAGAAAAGT AAGACAAGAATGGCAAGACAAGCAGCAAGAACAAGAAAAGT < 41bp 0.576048201432101 0.786860190796944 0.23927367 0.18265414 prediction 0.421623978729686 Functional Gain - RALB ENSG00000144118 CDS Human protein_coding chr2:121050789 chr2:121050787 nonsynonymous SNV 1.000 0 19 hm1A_associated_SNPs_22000 0 0 0 4 121050780 121050800 mRNA hsa-miR-431 RALB miRanda miRanda
2192 chr2 121050787 121050787 1 + A C UCEC 121050789 + 121050769 121050809 41 AAGACAAGAATGGCAAGAAAAGCAGCAAGAACAAGAAAAGT AAGACAAGAATGGCAAGACAAGCAGCAAGAACAAGAAAAGT < 41bp 0.576048201432101 0.786860190796944 0.23927367 0.18265414 prediction 0.421623978729686 Functional Gain - RALB ENSG00000144118 CDS Human protein_coding chr2:121050789 chr2:121050787 nonsynonymous SNV 1.000 0 19 hm1A_associated_SNPs_22000 0 0 0 4 121050766 121050788 mRNA hsa-miR-431 RALB miRanda miRanda
2192 chr8 86044067 86044067 1 + A C rs6985225 86044069 + 86044049 86044089 41 AGCTAAAGAAATAGCCAAAGAAGAGAAAAAGCATGAGCAAA AGCTAAAGAAATAGCCAACGAAGAGAAAAAGCATGAGCAAA < 41bp 0.518101722074568 0.728847217796226 0.20996982 0.338049 prediction 0.421490991443315 Functional Gain - LRRCC1 ENSG00000133739 CDS Human protein_coding chr8:86044069 chr8:86044067 nonsynonymous SNV 0.991 3 19 hm1A_associated_SNPs_22011 0 0 1 1 86044049 86044069 mRNA hsa-miR-9 LRRCC1 miRanda miRanda
2192 chr1 76254939 76254939 1 + A C UCEC 76254941 + 76254921 76254961 41 TCATCGCATGAATAGAGAAGAGATTCTGGCATTTATTAAGT TCATCGCATGAATAGAGACGAGATTCTGGCATTTATTAAGT < 41bp 0.578569186646943 0.789228633395369 0.104379475 0.12748566 prediction 0.421318893496851 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76254941 chr1:76254939 nonsynonymous SNV 0.997 1 19 hm1A_associated_SNPs_22030 0 0 1 1 76254925 76254946 mRNA hsa-miR-216b RABGGTB miRanda miRanda
2192 chr5 93966281 93966281 1 + T C rs137881277 93966283 + 93966263 93966303 41 GCTTGATGAAACAACTTATGAATGGGGATATAAAATTGAAA GCTTGATGAAACAACTTACGAATGGGGATATAAAATTGAAA < 41bp 0.44182902008795 0.710470455558547 0.090932846 0.12652254 prediction 0.420940911117094 Functional Gain - SLF1 ENSG00000133302 CDS Human protein_coding chr5:93966283 chr5:93966281 synonymous SNV . 0 19 hm1A_associated_SNPs_22072 0 0 1 6 93966265 93966288 mRNA hsa-miR-181a ANKRD32 miRanda miRanda
2192 chr5 93966281 93966281 1 + T C rs137881277 93966283 + 93966263 93966303 41 GCTTGATGAAACAACTTATGAATGGGGATATAAAATTGAAA GCTTGATGAAACAACTTACGAATGGGGATATAAAATTGAAA < 41bp 0.44182902008795 0.710470455558547 0.090932846 0.12652254 prediction 0.420940911117094 Functional Gain - SLF1 ENSG00000133302 CDS Human protein_coding chr5:93966283 chr5:93966281 synonymous SNV . 0 19 hm1A_associated_SNPs_22072 0 0 1 6 93966265 93966288 mRNA hsa-miR-181b ANKRD32 miRanda miRanda
2192 chr5 93966281 93966281 1 + T C rs137881277 93966283 + 93966263 93966303 41 GCTTGATGAAACAACTTATGAATGGGGATATAAAATTGAAA GCTTGATGAAACAACTTACGAATGGGGATATAAAATTGAAA < 41bp 0.44182902008795 0.710470455558547 0.090932846 0.12652254 prediction 0.420940911117094 Functional Gain - SLF1 ENSG00000133302 CDS Human protein_coding chr5:93966283 chr5:93966281 synonymous SNV . 0 19 hm1A_associated_SNPs_22072 0 0 1 6 93966265 93966288 mRNA hsa-miR-181c ANKRD32 miRanda miRanda
2192 chr5 93966281 93966281 1 + T C rs137881277 93966283 + 93966263 93966303 41 GCTTGATGAAACAACTTATGAATGGGGATATAAAATTGAAA GCTTGATGAAACAACTTACGAATGGGGATATAAAATTGAAA < 41bp 0.44182902008795 0.710470455558547 0.090932846 0.12652254 prediction 0.420940911117094 Functional Gain - SLF1 ENSG00000133302 CDS Human protein_coding chr5:93966283 chr5:93966281 synonymous SNV . 0 19 hm1A_associated_SNPs_22072 0 0 1 6 93966266 93966290 mRNA hsa-miR-136 ANKRD32 miRanda miRanda
2192 chr5 93966281 93966281 1 + T C rs137881277 93966283 + 93966263 93966303 41 GCTTGATGAAACAACTTATGAATGGGGATATAAAATTGAAA GCTTGATGAAACAACTTACGAATGGGGATATAAAATTGAAA < 41bp 0.44182902008795 0.710470455558547 0.090932846 0.12652254 prediction 0.420940911117094 Functional Gain - SLF1 ENSG00000133302 CDS Human protein_coding chr5:93966283 chr5:93966281 synonymous SNV . 0 19 hm1A_associated_SNPs_22072 0 0 1 6 93966265 93966288 mRNA hsa-miR-181d ANKRD32 miRanda miRanda
2192 chr5 93966281 93966281 1 + T C rs137881277 93966283 + 93966263 93966303 41 GCTTGATGAAACAACTTATGAATGGGGATATAAAATTGAAA GCTTGATGAAACAACTTACGAATGGGGATATAAAATTGAAA < 41bp 0.44182902008795 0.710470455558547 0.090932846 0.12652254 prediction 0.420940911117094 Functional Gain - SLF1 ENSG00000133302 CDS Human protein_coding chr5:93966283 chr5:93966281 synonymous SNV . 0 19 hm1A_associated_SNPs_22072 0 0 1 6 93966280 93966300 mRNA hsa-miR-590-3p ANKRD32 miRanda miRanda
2192 chr22 45255678 45255678 1 + C T UCEC 45255677 + 45255657 45255697 41 GAGCCTCCCAGAGCACAACTACGTCGTCCTCCGCTACCTCA GAGCCTCCCAGAGCACAACTATGTCGTCCTCCGCTACCTCA < 41bp 0.589195368603474 0.799571557763782 0.43734187 0.31908792 prediction 0.420752378320616 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45255677 chr22:45255678 synonymous SNV . 0 22 hm1A_associated_SNPs_22093 0 0 1 9 45255673 45255697 mRNA hsa-let-7a ARHGAP8 miRanda miRanda
2192 chr22 45255678 45255678 1 + C T UCEC 45255677 + 45255657 45255697 41 GAGCCTCCCAGAGCACAACTACGTCGTCCTCCGCTACCTCA GAGCCTCCCAGAGCACAACTATGTCGTCCTCCGCTACCTCA < 41bp 0.589195368603474 0.799571557763782 0.43734187 0.31908792 prediction 0.420752378320616 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45255677 chr22:45255678 synonymous SNV . 0 22 hm1A_associated_SNPs_22093 0 0 1 9 45255673 45255697 mRNA hsa-let-7b ARHGAP8 miRanda miRanda
2192 chr22 45255678 45255678 1 + C T UCEC 45255677 + 45255657 45255697 41 GAGCCTCCCAGAGCACAACTACGTCGTCCTCCGCTACCTCA GAGCCTCCCAGAGCACAACTATGTCGTCCTCCGCTACCTCA < 41bp 0.589195368603474 0.799571557763782 0.43734187 0.31908792 prediction 0.420752378320616 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45255677 chr22:45255678 synonymous SNV . 0 22 hm1A_associated_SNPs_22093 0 0 1 9 45255675 45255697 mRNA hsa-let-7c ARHGAP8 miRanda miRanda
2192 chr22 45255678 45255678 1 + C T UCEC 45255677 + 45255657 45255697 41 GAGCCTCCCAGAGCACAACTACGTCGTCCTCCGCTACCTCA GAGCCTCCCAGAGCACAACTATGTCGTCCTCCGCTACCTCA < 41bp 0.589195368603474 0.799571557763782 0.43734187 0.31908792 prediction 0.420752378320616 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45255677 chr22:45255678 synonymous SNV . 0 22 hm1A_associated_SNPs_22093 0 0 1 9 45255673 45255697 mRNA hsa-let-7d ARHGAP8 miRanda miRanda
2192 chr22 45255678 45255678 1 + C T UCEC 45255677 + 45255657 45255697 41 GAGCCTCCCAGAGCACAACTACGTCGTCCTCCGCTACCTCA GAGCCTCCCAGAGCACAACTATGTCGTCCTCCGCTACCTCA < 41bp 0.589195368603474 0.799571557763782 0.43734187 0.31908792 prediction 0.420752378320616 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45255677 chr22:45255678 synonymous SNV . 0 22 hm1A_associated_SNPs_22093 0 0 1 9 45255673 45255697 mRNA hsa-let-7e ARHGAP8 miRanda miRanda
2192 chr22 45255678 45255678 1 + C T UCEC 45255677 + 45255657 45255697 41 GAGCCTCCCAGAGCACAACTACGTCGTCCTCCGCTACCTCA GAGCCTCCCAGAGCACAACTATGTCGTCCTCCGCTACCTCA < 41bp 0.589195368603474 0.799571557763782 0.43734187 0.31908792 prediction 0.420752378320616 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45255677 chr22:45255678 synonymous SNV . 0 22 hm1A_associated_SNPs_22093 0 0 1 9 45255676 45255697 mRNA hsa-let-7f ARHGAP8 miRanda miRanda
2192 chr22 45255678 45255678 1 + C T UCEC 45255677 + 45255657 45255697 41 GAGCCTCCCAGAGCACAACTACGTCGTCCTCCGCTACCTCA GAGCCTCCCAGAGCACAACTATGTCGTCCTCCGCTACCTCA < 41bp 0.589195368603474 0.799571557763782 0.43734187 0.31908792 prediction 0.420752378320616 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45255677 chr22:45255678 synonymous SNV . 0 22 hm1A_associated_SNPs_22093 0 0 1 9 45255670 45255697 mRNA hsa-miR-98 ARHGAP8 miRanda miRanda
2192 chr22 45255678 45255678 1 + C T UCEC 45255677 + 45255657 45255697 41 GAGCCTCCCAGAGCACAACTACGTCGTCCTCCGCTACCTCA GAGCCTCCCAGAGCACAACTATGTCGTCCTCCGCTACCTCA < 41bp 0.589195368603474 0.799571557763782 0.43734187 0.31908792 prediction 0.420752378320616 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45255677 chr22:45255678 synonymous SNV . 0 22 hm1A_associated_SNPs_22093 0 0 1 9 45255676 45255697 mRNA hsa-let-7g ARHGAP8 miRanda miRanda
2192 chr22 45255678 45255678 1 + C T UCEC 45255677 + 45255657 45255697 41 GAGCCTCCCAGAGCACAACTACGTCGTCCTCCGCTACCTCA GAGCCTCCCAGAGCACAACTATGTCGTCCTCCGCTACCTCA < 41bp 0.589195368603474 0.799571557763782 0.43734187 0.31908792 prediction 0.420752378320616 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45255677 chr22:45255678 synonymous SNV . 0 22 hm1A_associated_SNPs_22093 0 0 1 9 45255676 45255697 mRNA hsa-let-7i ARHGAP8 miRanda miRanda
2192 chr12 54396557 54396557 1 + A C rs572802950 54396559 + 54396539 54396579 41 GACGAAAAAGAAAAGGAAAGAGCAAGATAGACAAAAGCCAA GACGAAAAAGAAAAGGAACGAGCAAGATAGACAAAAGCCAA < 41bp 0.445926525440391 0.709936355071906 0.30505145 0.4148957 prediction 0.419872710143811 Functional Gain - HOXC9 ENSG00000180806 UTR3 Human protein_coding chr12:54396559 chr12:54396557 . . 0 19 hm1A_associated_SNPs_22193 0 0 0 1 54396547 54396567 mRNA hsa-miR-431 HOXC9 miRanda miRanda
2192 chr12 3692298 3692298 1 + C T UCEC 3692297 + 3692277 3692317 41 CTGCCTGCAGATACAGCGCAACGACTACGTCCACGCCCTGG CTGCCTGCAGATACAGCGCAATGACTACGTCCACGCCCTGG < 41bp 0.592685132248984 0.802425585781504 0.21661043 0.18800005 prediction 0.41948090706504 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3692297 chr12:3692298 synonymous SNV . 0 22 hm1A_associated_SNPs_22237 0 0 0 1 3692287 3692305 mRNA hsa-miR-142-3p PRMT8 miRanda miRanda
2192 chr22 25160988 25160988 1 + A C rs16978940 25160990 + 25160970 25161010 41 GAGATAATAACATAAGGGAGAGCTGAGCCAGTTGTCCTGTG GAGATAATAACATAAGGGCGAGCTGAGCCAGTTGTCCTGTG < 41bp 0.492553186770645 0.709558135998377 0.097209126 0.124183804 prediction 0.419116271996754 Functional Gain - TOP1P2 ENSG00000184571 intronic Human protein_coding chr22:25160990 chr22:25160988 . . 0 19 hm1A_associated_SNPs_22277 0 0 0 4 25160978 25160999 mRNA hsa-miR-24 TOP1P2 miRanda miRanda
2192 chr22 25160988 25160988 1 + A C rs16978940 25160990 + 25160970 25161010 41 GAGATAATAACATAAGGGAGAGCTGAGCCAGTTGTCCTGTG GAGATAATAACATAAGGGCGAGCTGAGCCAGTTGTCCTGTG < 41bp 0.492553186770645 0.709558135998377 0.097209126 0.124183804 prediction 0.419116271996754 Functional Gain - TOP1P2 ENSG00000184571 intronic Human protein_coding chr22:25160990 chr22:25160988 . . 0 19 hm1A_associated_SNPs_22277 0 0 0 4 25160967 25160989 mRNA hsa-miR-204 TOP1P2 miRanda miRanda
2192 chr22 25160988 25160988 1 + A C rs16978940 25160990 + 25160970 25161010 41 GAGATAATAACATAAGGGAGAGCTGAGCCAGTTGTCCTGTG GAGATAATAACATAAGGGCGAGCTGAGCCAGTTGTCCTGTG < 41bp 0.492553186770645 0.709558135998377 0.097209126 0.124183804 prediction 0.419116271996754 Functional Gain - TOP1P2 ENSG00000184571 intronic Human protein_coding chr22:25160990 chr22:25160988 . . 0 19 hm1A_associated_SNPs_22277 0 0 0 4 25160965 25160989 mRNA hsa-miR-211 TOP1P2 miRanda miRanda
2192 chr22 25160988 25160988 1 + A C rs16978940 25160990 + 25160970 25161010 41 GAGATAATAACATAAGGGAGAGCTGAGCCAGTTGTCCTGTG GAGATAATAACATAAGGGCGAGCTGAGCCAGTTGTCCTGTG < 41bp 0.492553186770645 0.709558135998377 0.097209126 0.124183804 prediction 0.419116271996754 Functional Gain - TOP1P2 ENSG00000184571 intronic Human protein_coding chr22:25160990 chr22:25160988 . . 0 19 hm1A_associated_SNPs_22277 0 0 0 4 25160981 25161001 mRNA hsa-miR-149 TOP1P2 miRanda miRanda
2192 chr8 22974315 22974315 1 + A C CESC 22974317 + 22974297 22974337 41 CTGCTGAAGAGACAATGAACACCAGCCCGGGGACTCCTGCC CTGCTGAAGAGACAATGACCACCAGCCCGGGGACTCCTGCC < 41bp 0.525423254715415 0.734752678836978 0.321261 0.37446436 prediction 0.418658848243127 Functional Gain - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22974317 chr8:22974315 nonsynonymous SNV 0.008 1 19 hm1A_associated_SNPs_22323 0 0 0 1 22974301 22974323 mRNA hsa-miR-138 TNFRSF10C miRanda miRanda
2192 chr3 51991072 51991072 1 + G T rs188008816 51991071 + 51991051 51991091 41 CACAGGTGGTCCCCAGGCCAAGATGGGCAGGTGTCACAAAG CACAGGTGGTCCCCAGGCCAATATGGGCAGGTGTCACAAAG < 41bp 0.469635031169275 0.709310618561359 0.26485157 0.35821572 prediction 0.418621237122717 Functional Gain - GPR62 ENSG00000180929 UTR3 Human protein_coding chr3:51991071 chr3:51991072 . . 0 22 hm1A_associated_SNPs_22328 0 0 0 1 51991067 51991090 mRNA hsa-miR-758 GPR62 miRanda miRanda
2192 chr2 231867432 231867432 1 + C T UCEC 231867431 + 231867411 231867451 41 AAAACCCTCCAGTCATCGTAACGCGTGTCCTCCAAGCCCTC AAAACCCTCCAGTCATCGTAATGCGTGTCCTCCAAGCCCTC < 41bp 0.522767036779184 0.731865247812623 0.34618685 0.304876 prediction 0.418196422066878 Functional Gain - SPATA3 ENSG00000173699 CDS Human protein_coding chr2:231867431 chr2:231867432 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_22377 0 0 0 1 231867430 231867451 mRNA hsa-miR-296-3p SPATA3 miRanda miRanda
2192 chr14 88491777 88491777 1 + T C rs115101692 88491779 + 88491759 88491799 41 GAAGGAAATGATTTCCTATGATTCTGCTTACTGCTTAAAAA GAAGGAAATGATTTCCTACGATTCTGCTTACTGCTTAAAAA < 41bp 0.61377487103162 0.822835593397664 0.043555737 0.1302729 prediction 0.418121444732088 Functional Gain - LINC01146 ENSG00000258867 ncRNA_exonic Human lincRNA chr14:88491779 chr14:88491777 . . 0 19 hm1A_associated_SNPs_22385 0 0 0 2 88491760 88491780 mRNA hsa-miR-376a LOC283587 miRanda miRanda
2192 chr14 88491777 88491777 1 + T C rs115101692 88491779 + 88491759 88491799 41 GAAGGAAATGATTTCCTATGATTCTGCTTACTGCTTAAAAA GAAGGAAATGATTTCCTACGATTCTGCTTACTGCTTAAAAA < 41bp 0.61377487103162 0.822835593397664 0.043555737 0.1302729 prediction 0.418121444732088 Functional Gain - LINC01146 ENSG00000258867 ncRNA_exonic Human lincRNA chr14:88491779 chr14:88491777 . . 0 19 hm1A_associated_SNPs_22385 0 0 0 2 88491759 88491780 mRNA hsa-miR-376b LOC283587 miRanda miRanda
2192 chr6 24418342 24418342 1 + A C KIRC 24418344 + 24418324 24418364 41 TGCTGGGATTGACCATGCAGAAGAGATGGAGTTGCTGTTGG TGCTGGGATTGACCATGCCGAAGAGATGGAGTTGCTGTTGG < 41bp 0.46043140923561 0.708962531007203 0.20936522 0.25900096 prediction 0.417925062014406 Functional Gain - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24418344 chr6:24418342 synonymous SNV . 0 19 hm1A_associated_SNPs_22402 0 0 1 1 24418325 24418346 mRNA hsa-miR-544 MRS2 miRanda miRanda
2192 chr7 123517095 123517095 1 + T C UCEC 123517097 + 123517077 123517117 41 TCAGGGATATGAAGGAGCTGATTGCAGAGAAATAAAGACGG TCAGGGATATGAAGGAGCCGATTGCAGAGAAATAAAGACGG < 41bp 0.67202555475137 0.880954080429184 0.24121311 0.45528322 prediction 0.417857051355628 Functional Gain - HYAL4 ENSG00000106302 CDS Human protein_coding chr7:123517097 chr7:123517095 synonymous SNV . 0 19 hm1A_associated_SNPs_22410 0 0 0 1 123517087 123517106 mRNA hsa-miR-544 HYAL4 miRanda miRanda
2192 chr11 43923243 43923243 1 + C T UCEC 43923242 + 43923222 43923262 41 TCACTAAGTTTTGGTGCCACACGCACATTTGAGATGAGAAA TCACTAAGTTTTGGTGCCACATGCACATTTGAGATGAGAAA < 41bp 0.569414496331105 0.778261878276398 0.12464744 0.14158785 prediction 0.417694763890585 Functional Gain - ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43923242 chr11:43923243 nonsynonymous SNV 0.991 4 22 hm1A_associated_SNPs_22423 0 0 0 2 43923228 43923249 mRNA hsa-miR-210 ALKBH3 miRanda miRanda
2192 chr11 43923243 43923243 1 + C T UCEC 43923242 + 43923222 43923262 41 TCACTAAGTTTTGGTGCCACACGCACATTTGAGATGAGAAA TCACTAAGTTTTGGTGCCACATGCACATTTGAGATGAGAAA < 41bp 0.569414496331105 0.778261878276398 0.12464744 0.14158785 prediction 0.417694763890585 Functional Gain - ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43923242 chr11:43923243 nonsynonymous SNV 0.991 4 22 hm1A_associated_SNPs_22423 0 0 0 2 43923236 43923258 mRNA hsa-miR-216a ALKBH3 miRanda miRanda
2192 chr5 102309956 102309956 1 + G C LUAD 102309958 + 102309938 102309978 41 AAATGTAGTCCAAAAAAAGGATCTTGGTCGATCTGATGCCA AAATGTAGTCCAAAAAAACGATCTTGGTCGATCTGATGCCA < 41bp 0.564982314039144 0.773637362398556 0.17332697 0.3062371 prediction 0.417310096718823 Functional Gain - PAM ENSG00000145730 CDS Human protein_coding chr5:102309958 chr5:102309956 nonsynonymous SNV 0.995 4 19 hm1A_associated_SNPs_22472 0 0 1 1 102309955 102309978 mRNA hsa-miR-24 PAM miRanda miRanda
2192 chr11 66288771 66288771 1 + G T STAD 66288770 + 66288750 66288790 41 CCCAGCGTCCCCGTCTTCCTAGAGGTTTCTGGCCAGTTTGA CCCAGCGTCCCCGTCTTCCTATAGGTTTCTGGCCAGTTTGA < 41bp 0.562935774266955 0.771569801413203 0.19825795 0.23489192 prediction 0.417268054292496 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66288770 chr11:66288771 stopgain 0.990 0 22 hm1A_associated_SNPs_22474 0 0 1 2 66288767 66288787 mRNA hsa-miR-193a-3p BBS1 miRanda miRanda
2192 chr11 66288771 66288771 1 + G T STAD 66288770 + 66288750 66288790 41 CCCAGCGTCCCCGTCTTCCTAGAGGTTTCTGGCCAGTTTGA CCCAGCGTCCCCGTCTTCCTATAGGTTTCTGGCCAGTTTGA < 41bp 0.562935774266955 0.771569801413203 0.19825795 0.23489192 prediction 0.417268054292496 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66288770 chr11:66288771 stopgain 0.990 0 22 hm1A_associated_SNPs_22474 0 0 1 2 66288766 66288787 mRNA hsa-miR-193b BBS1 miRanda miRanda
2192 chr7 94167084 94167084 1 + T C OV 94167085 + 94167065 94167105 41 CCTGATTATGGCATATTTCTATATGTGTGACCGTGCAAATC CCTGATTATGGCATATTTCCATATGTGTGACCGTGCAAATC < 41bp 0.496535124649932 0.708588418139281 0.04142064 0.6003086 prediction 0.417176836278562 Functional Gain - CASD1 ENSG00000127995 CDS Human protein_coding chr7:94167085 chr7:94167084 nonsynonymous SNV 1.000 2 20 hm1A_associated_SNPs_22485 0 0 1 2 94167074 94167095 mRNA hsa-miR-377 CASD1 miRanda miRanda
2192 chr7 94167084 94167084 1 + T C OV 94167085 + 94167065 94167105 41 CCTGATTATGGCATATTTCTATATGTGTGACCGTGCAAATC CCTGATTATGGCATATTTCCATATGTGTGACCGTGCAAATC < 41bp 0.496535124649932 0.708588418139281 0.04142064 0.6003086 prediction 0.417176836278562 Functional Gain - CASD1 ENSG00000127995 CDS Human protein_coding chr7:94167085 chr7:94167084 nonsynonymous SNV 1.000 2 20 hm1A_associated_SNPs_22485 0 0 1 2 94167074 94167096 mRNA hsa-miR-342-3p CASD1 miRanda miRanda
2192 chr2 132275412 132275412 1 + T C rs542030150 132275414 + 132275394 132275434 41 CATGCGCTCCTGGTGTTCTGAGTGGCCAAAGTCTTTGCCCA CATGCGCTCCTGGTGTTCCGAGTGGCCAAAGTCTTTGCCCA < 41bp 0.593537138979133 0.801944347202184 0.2663551 0.3157221 prediction 0.416814416446103 Functional Gain - LOC150776 ENSG00000152117 ncRNA_exonic Human transcribed_processed_pseudogene chr2:132275414 chr2:132275412 . . 0 19 hm1A_associated_SNPs_22529 0 0 0 2 132275399 132275423 mRNA hsa-miR-96 LOC150776 miRanda miRanda
2192 chr2 132275412 132275412 1 + T C rs542030150 132275414 + 132275394 132275434 41 CATGCGCTCCTGGTGTTCTGAGTGGCCAAAGTCTTTGCCCA CATGCGCTCCTGGTGTTCCGAGTGGCCAAAGTCTTTGCCCA < 41bp 0.593537138979133 0.801944347202184 0.2663551 0.3157221 prediction 0.416814416446103 Functional Gain - LOC150776 ENSG00000152117 ncRNA_exonic Human transcribed_processed_pseudogene chr2:132275414 chr2:132275412 . . 0 19 hm1A_associated_SNPs_22529 0 0 0 2 132275403 132275423 mRNA hsa-miR-1271 LOC150776 miRanda miRanda
2192 chr17 42268209 42268209 1 + G T BLCA 42268208 + 42268188 42268228 41 ACCGTCTTCTTCAGCTTCCTAGTATTTGGGATGTATGGACG ACCGTCTTCTTCAGCTTCCTATTATTTGGGATGTATGGACG < 41bp 0.61717775113377 0.825420082067535 0.20138532 0.19420493 prediction 0.41648466186753 Functional Gain - TMUB2 ENSG00000168591 CDS Human protein_coding chr17:42268208 chr17:42268209 nonsynonymous SNV 1.000 0 22 hm1A_associated_SNPs_22558 0 0 1 1 42268195 42268222 mRNA hsa-miR-324-5p TMUB2 miRanda miRanda
2192 chr19 7976364 7976364 1 + C T COAD 7976363 + 7976343 7976383 41 TTCCCTACAAGAACTGCAAGACGGACTTTGAGGTCCTCACC TTCCCTACAAGAACTGCAAGATGGACTTTGAGGTCCTCACC < 41bp 0.518548341333917 0.726639043204399 0.2213116 0.20469913 prediction 0.416181403740964 Functional Gain - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7976363 chr19:7976364 nonsynonymous SNV 0.997 3 22 hm1A_associated_SNPs_22586 0 0 1 1 7976345 7976365 mRNA hsa-miR-431 MAP2K7 miRanda miRanda
2192 chr8 30623765 30623765 1 + G T UCEC 30623764 + 30623744 30623784 41 TCTTATTTGACTGGATGACGAGAATTGGGTACCACATATCT TCTTATTTGACTGGATGACGATAATTGGGTACCACATATCT < 41bp 0.50461337973797 0.712488401415508 0.07820848 0.10842255 prediction 0.415750043355077 Functional Gain - UBXN8 ENSG00000104691 ncRNA_exonic Human protein_coding chr8:30623764 chr8:30623765 . 0.004 0 22 hm1A_associated_SNPs_22634 0 0 1 1 30623763 30623784 mRNA hsa-miR-190 UBXN8 miRanda miRanda
2192 chr6 26423221 26423221 1 + C T UCEC 26423220 + 26423200 26423240 41 CCATGGTGGGAGAAAACACTACGTTACGATGCTGTCTGTCA CCATGGTGGGAGAAAACACTATGTTACGATGCTGTCTGTCA < 41bp 0.499711456612141 0.707807464010064 0.40121028 0.3544485 prediction 0.415614928020127 Functional Gain - BTN2A3P ENSG00000124549 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:26423220 chr6:26423221 . . 0 22 hm1A_associated_SNPs_22647 0 0 0 2 26423199 26423222 mRNA hsa-miR-142-3p BTN2A3 miRanda miRanda
2192 chr6 26423221 26423221 1 + C T UCEC 26423220 + 26423200 26423240 41 CCATGGTGGGAGAAAACACTACGTTACGATGCTGTCTGTCA CCATGGTGGGAGAAAACACTATGTTACGATGCTGTCTGTCA < 41bp 0.499711456612141 0.707807464010064 0.40121028 0.3544485 prediction 0.415614928020127 Functional Gain - BTN2A3P ENSG00000124549 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:26423220 chr6:26423221 . . 0 22 hm1A_associated_SNPs_22647 0 0 0 2 26423220 26423242 mRNA hsa-miR-542-3p BTN2A3 miRanda miRanda
2192 chr1 149376753 149376753 1 + A C LUAD 149376755 + 149376735 149376775 41 GTCACCCTGAGCTGTGAAACAAAGTTGCTCTTGCAGAGGCC GTCACCCTGAGCTGTGAACCAAAGTTGCTCTTGCAGAGGCC < 41bp 0.562891930392683 0.770576221366046 0.045473307 0.06669268 prediction 0.415368581946726 Functional Gain - FCGR1CP ENSG00000253193 ncRNA_exonic Human other chr1:149376755 chr1:149376753 . . 0 19 hm1A_associated_SNPs_22674 0 0 0 2 149376746 149376768 mRNA hsa-miR-335 FCGR1C miRanda miRanda
2192 chr1 149376753 149376753 1 + A C LUAD 149376755 + 149376735 149376775 41 GTCACCCTGAGCTGTGAAACAAAGTTGCTCTTGCAGAGGCC GTCACCCTGAGCTGTGAACCAAAGTTGCTCTTGCAGAGGCC < 41bp 0.562891930392683 0.770576221366046 0.045473307 0.06669268 prediction 0.415368581946726 Functional Gain - FCGR1CP ENSG00000253193 ncRNA_exonic Human other chr1:149376755 chr1:149376753 . . 0 19 hm1A_associated_SNPs_22674 0 0 0 2 149376743 149376765 mRNA hsa-miR-146b-5p FCGR1C miRanda miRanda
2192 chr3 51746533 51746533 1 + C T GBM 51746532 + 51746512 51746552 41 TCAGATCCCACAGATTAGCTACGCCTCTACCAGTGCCAAGC TCAGATCCCACAGATTAGCTATGCCTCTACCAGTGCCAAGC < 41bp 0.578627359605184 0.786241752040589 0.10764557 0.09470016 prediction 0.415228784870809 Functional Gain - GRM2 ENSG00000164082 CDS Human protein_coding chr3:51746532 chr3:51746533 synonymous SNV . 0 22 hm1A_associated_SNPs_22687 0 0 0 2 51746529 51746551 mRNA hsa-miR-96 GRM2 miRanda miRanda
2192 chr3 51746533 51746533 1 + C T GBM 51746532 + 51746512 51746552 41 TCAGATCCCACAGATTAGCTACGCCTCTACCAGTGCCAAGC TCAGATCCCACAGATTAGCTATGCCTCTACCAGTGCCAAGC < 41bp 0.578627359605184 0.786241752040589 0.10764557 0.09470016 prediction 0.415228784870809 Functional Gain - GRM2 ENSG00000164082 CDS Human protein_coding chr3:51746532 chr3:51746533 synonymous SNV . 0 22 hm1A_associated_SNPs_22687 0 0 0 2 51746529 51746551 mRNA hsa-miR-1271 GRM2 miRanda miRanda
2192 chr14 77294673 77294673 1 + A C UCEC 77294675 + 77294655 77294695 41 TACGACAGAGCAGCGATAAAATGCTCTACTGTGAGGCCGAA TACGACAGAGCAGCGATACAATGCTCTACTGTGAGGCCGAA < 41bp 0.620984472940787 0.8284432385278 0.6108254 0.5450541 prediction 0.414917531174025 Functional Gain - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77294675 chr14:77294673 nonsynonymous SNV 0.002 0 19 hm1A_associated_SNPs_22723 0 0 0 2 77294669 77294689 mRNA hsa-miR-27a C14orf166B miRanda miRanda
2192 chr14 77294673 77294673 1 + A C UCEC 77294675 + 77294655 77294695 41 TACGACAGAGCAGCGATAAAATGCTCTACTGTGAGGCCGAA TACGACAGAGCAGCGATACAATGCTCTACTGTGAGGCCGAA < 41bp 0.620984472940787 0.8284432385278 0.6108254 0.5450541 prediction 0.414917531174025 Functional Gain - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77294675 chr14:77294673 nonsynonymous SNV 0.002 0 19 hm1A_associated_SNPs_22723 0 0 0 2 77294669 77294689 mRNA hsa-miR-27b C14orf166B miRanda miRanda
2192 chr8 58197001 58197001 1 + T C UCEC 58197003 + 58196983 58197023 41 TCTAATACTGACAGGCTATAATGTGCCAAGAAGATGTGAAA TCTAATACTGACAGGCTACAATGTGCCAAGAAGATGTGAAA < 41bp 0.639565021558583 0.846898686551342 0.0407871 0.038453072 prediction 0.414667329985518 Functional Gain - LINC00588 ENSG00000215117 ncRNA_exonic Human lincRNA chr8:58197003 chr8:58197001 . . 0 19 hm1A_associated_SNPs_22748 0 0 0 3 58196997 58197012 mRNA hsa-miR-96 C8orf71 miRanda miRanda
2192 chr8 58197001 58197001 1 + T C UCEC 58197003 + 58196983 58197023 41 TCTAATACTGACAGGCTATAATGTGCCAAGAAGATGTGAAA TCTAATACTGACAGGCTACAATGTGCCAAGAAGATGTGAAA < 41bp 0.639565021558583 0.846898686551342 0.0407871 0.038453072 prediction 0.414667329985518 Functional Gain - LINC00588 ENSG00000215117 ncRNA_exonic Human lincRNA chr8:58197003 chr8:58197001 . . 0 19 hm1A_associated_SNPs_22748 0 0 0 3 58196997 58197012 mRNA hsa-miR-182 C8orf71 miRanda miRanda
2192 chr8 58197001 58197001 1 + T C UCEC 58197003 + 58196983 58197023 41 TCTAATACTGACAGGCTATAATGTGCCAAGAAGATGTGAAA TCTAATACTGACAGGCTACAATGTGCCAAGAAGATGTGAAA < 41bp 0.639565021558583 0.846898686551342 0.0407871 0.038453072 prediction 0.414667329985518 Functional Gain - LINC00588 ENSG00000215117 ncRNA_exonic Human lincRNA chr8:58197003 chr8:58197001 . . 0 19 hm1A_associated_SNPs_22748 0 0 0 3 58196997 58197012 mRNA hsa-miR-1271 C8orf71 miRanda miRanda
2192 chr19 36205902 36205902 1 + A C BLCA 36205904 + 36205884 36205924 41 AGCCAGATCCAGGCCTGAAGAAACATCAGGAGGAGCCAGAG AGCCAGATCCAGGCCTGACGAAACATCAGGAGGAGCCAGAG < 41bp 0.495374723097215 0.707141706036347 0.5607132 0.6182362 prediction 0.414283412072693 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205904 chr19:36205902 nonsynonymous SNV 0.014 1 19 hm1A_associated_SNPs_22793 0 0 0 1 36205894 36205923 mRNA hsa-miR-149 ZBTB32 miRanda miRanda
2192 chr2 66691320 66691320 1 + C T COAD 66691319 + 66691299 66691339 41 GCCCTTCCAGCGGTGGCCACACGTCACACAGTGGGGACAAC GCCCTTCCAGCGGTGGCCACATGTCACACAGTGGGGACAAC < 41bp 0.526487363777636 0.733462191812452 0.3897946 0.29121763 prediction 0.413949656069631 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66691319 chr2:66691320 nonsynonymous SNV 0.936 3 22 hm1A_associated_SNPs_22828 0 0 0 1 66691305 66691327 mRNA hsa-miR-210 MEIS1 miRanda miRanda
2192 chr8 98703312 98703312 1 + G C BLCA 98703314 + 98703294 98703334 41 CTGCTTCTGCAGGAAAGAGGAAAACTGAGCCATCTGCCTGG CTGCTTCTGCAGGAAAGACGAAAACTGAGCCATCTGCCTGG < 41bp 0.504588909068555 0.711370587953394 0.14282224 0.17227897 prediction 0.413563357769678 Functional Gain - MTDH ENSG00000147649 CDS Human protein_coding chr8:98703314 chr8:98703312 nonsynonymous SNV 1.000 3 19 hm1A_associated_SNPs_22880 0 0 1 1 98703304 98703325 mRNA hsa-miR-24 MTDH miRanda miRanda
2192 chr6 74107454 74107454 1 + A C PRAD 74107456 + 74107436 74107476 41 ATATACAAAGTACAACAAACACCACAATCCAAGTAAGCCAT ATATACAAAGTACAACAACCACCACAATCCAAGTAAGCCAT < 41bp 0.458805972361243 0.70674239150983 0.15081361 0.13529226 prediction 0.413484783019661 Functional Gain - DDX43 ENSG00000080007 CDS Human protein_coding chr6:74107456 chr6:74107454 nonsynonymous SNV 0.549 0 19 hm1A_associated_SNPs_22892 0 0 0 1 74107445 74107465 mRNA hsa-miR-219-5p DDX43 miRanda miRanda
2192 chr6 167752274 167752274 1 + C T rs34350976 167752273 + 167752253 167752293 41 CCCAGGCGAGGCCGCCCAACACCAACACTGGAGAAGAAGGT CCCAGGCGAGGCCGCCCAACATCAACACTGGAGAAGAAGGT < 41bp 0.572486451762158 0.778917851796023 0.15933862 0.18383083 prediction 0.41286280006773 Functional Gain - TTLL2 ENSG00000120440 CDS Human protein_coding chr6:167752273 chr6:167752274 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_22940 0 0 0 2 167752262 167752284 mRNA hsa-miR-199a-5p TTLL2 miRanda miRanda
2192 chr6 167752274 167752274 1 + C T rs34350976 167752273 + 167752253 167752293 41 CCCAGGCGAGGCCGCCCAACACCAACACTGGAGAAGAAGGT CCCAGGCGAGGCCGCCCAACATCAACACTGGAGAAGAAGGT < 41bp 0.572486451762158 0.778917851796023 0.15933862 0.18383083 prediction 0.41286280006773 Functional Gain - TTLL2 ENSG00000120440 CDS Human protein_coding chr6:167752273 chr6:167752274 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_22940 0 0 0 2 167752262 167752284 mRNA hsa-miR-199b-5p TTLL2 miRanda miRanda
2192 chr7 102584919 102584919 1 + T C UCEC 102584921 + 102584901 102584941 41 ATATATTAGAAGTTACTATGAAGAATGCCCCAAAGACAAGT ATATATTAGAAGTTACTACGAAGAATGCCCCAAAGACAAGT < 41bp 0.380299094852781 0.706344911827229 0.09538126 0.1273981 prediction 0.412689823654458 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584921 chr7:102584919 synonymous SNV . 0 19 hm1A_associated_SNPs_22966 0 0 1 6 102584898 102584922 mRNA hsa-miR-26a LRRC17 miRanda miRanda
2192 chr7 102584919 102584919 1 + T C UCEC 102584921 + 102584901 102584941 41 ATATATTAGAAGTTACTATGAAGAATGCCCCAAAGACAAGT ATATATTAGAAGTTACTACGAAGAATGCCCCAAAGACAAGT < 41bp 0.380299094852781 0.706344911827229 0.09538126 0.1273981 prediction 0.412689823654458 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584921 chr7:102584919 synonymous SNV . 0 19 hm1A_associated_SNPs_22966 0 0 1 6 102584899 102584922 mRNA hsa-miR-26b LRRC17 miRanda miRanda
2192 chr7 102584919 102584919 1 + T C UCEC 102584921 + 102584901 102584941 41 ATATATTAGAAGTTACTATGAAGAATGCCCCAAAGACAAGT ATATATTAGAAGTTACTACGAAGAATGCCCCAAAGACAAGT < 41bp 0.380299094852781 0.706344911827229 0.09538126 0.1273981 prediction 0.412689823654458 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584921 chr7:102584919 synonymous SNV . 0 19 hm1A_associated_SNPs_22966 0 0 1 6 102584904 102584925 mRNA hsa-miR-205 LRRC17 miRanda miRanda
2192 chr7 102584919 102584919 1 + T C UCEC 102584921 + 102584901 102584941 41 ATATATTAGAAGTTACTATGAAGAATGCCCCAAAGACAAGT ATATATTAGAAGTTACTACGAAGAATGCCCCAAAGACAAGT < 41bp 0.380299094852781 0.706344911827229 0.09538126 0.1273981 prediction 0.412689823654458 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584921 chr7:102584919 synonymous SNV . 0 19 hm1A_associated_SNPs_22966 0 0 1 6 102584914 102584936 mRNA hsa-miR-9 LRRC17 miRanda miRanda
2192 chr7 102584919 102584919 1 + T C UCEC 102584921 + 102584901 102584941 41 ATATATTAGAAGTTACTATGAAGAATGCCCCAAAGACAAGT ATATATTAGAAGTTACTACGAAGAATGCCCCAAAGACAAGT < 41bp 0.380299094852781 0.706344911827229 0.09538126 0.1273981 prediction 0.412689823654458 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584921 chr7:102584919 synonymous SNV . 0 19 hm1A_associated_SNPs_22966 0 0 1 6 102584902 102584922 mRNA hsa-miR-376a LRRC17 miRanda miRanda
2192 chr7 102584919 102584919 1 + T C UCEC 102584921 + 102584901 102584941 41 ATATATTAGAAGTTACTATGAAGAATGCCCCAAAGACAAGT ATATATTAGAAGTTACTACGAAGAATGCCCCAAAGACAAGT < 41bp 0.380299094852781 0.706344911827229 0.09538126 0.1273981 prediction 0.412689823654458 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584921 chr7:102584919 synonymous SNV . 0 19 hm1A_associated_SNPs_22966 0 0 1 6 102584901 102584922 mRNA hsa-miR-376b LRRC17 miRanda miRanda
2192 chr9 1056370 1056370 1 + A T UCEC 1056369 + 1056349 1056389 41 TAAAGAAAGGGAGATGTTGGAAACTTCTCAAGCTGCTGCTC TAAAGAAAGGGAGATGTTGGATACTTCTCAAGCTGCTGCTC < 41bp 0.52548203556802 0.731794092025758 0.2890277 0.30461127 prediction 0.412624112915475 Functional Gain - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056369 chr9:1056370 nonsynonymous SNV 0.986 4 22 hm1A_associated_SNPs_22973 0 0 0 6 1056366 1056389 mRNA hsa-miR-15a DMRT2 miRanda miRanda
2192 chr9 1056370 1056370 1 + A T UCEC 1056369 + 1056349 1056389 41 TAAAGAAAGGGAGATGTTGGAAACTTCTCAAGCTGCTGCTC TAAAGAAAGGGAGATGTTGGATACTTCTCAAGCTGCTGCTC < 41bp 0.52548203556802 0.731794092025758 0.2890277 0.30461127 prediction 0.412624112915475 Functional Gain - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056369 chr9:1056370 nonsynonymous SNV 0.986 4 22 hm1A_associated_SNPs_22973 0 0 0 6 1056367 1056389 mRNA hsa-miR-16 DMRT2 miRanda miRanda
2192 chr9 1056370 1056370 1 + A T UCEC 1056369 + 1056349 1056389 41 TAAAGAAAGGGAGATGTTGGAAACTTCTCAAGCTGCTGCTC TAAAGAAAGGGAGATGTTGGATACTTCTCAAGCTGCTGCTC < 41bp 0.52548203556802 0.731794092025758 0.2890277 0.30461127 prediction 0.412624112915475 Functional Gain - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056369 chr9:1056370 nonsynonymous SNV 0.986 4 22 hm1A_associated_SNPs_22973 0 0 0 6 1056366 1056389 mRNA hsa-miR-15b DMRT2 miRanda miRanda
2192 chr9 1056370 1056370 1 + A T UCEC 1056369 + 1056349 1056389 41 TAAAGAAAGGGAGATGTTGGAAACTTCTCAAGCTGCTGCTC TAAAGAAAGGGAGATGTTGGATACTTCTCAAGCTGCTGCTC < 41bp 0.52548203556802 0.731794092025758 0.2890277 0.30461127 prediction 0.412624112915475 Functional Gain - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056369 chr9:1056370 nonsynonymous SNV 0.986 4 22 hm1A_associated_SNPs_22973 0 0 0 6 1056365 1056389 mRNA hsa-miR-195 DMRT2 miRanda miRanda
2192 chr9 1056370 1056370 1 + A T UCEC 1056369 + 1056349 1056389 41 TAAAGAAAGGGAGATGTTGGAAACTTCTCAAGCTGCTGCTC TAAAGAAAGGGAGATGTTGGATACTTCTCAAGCTGCTGCTC < 41bp 0.52548203556802 0.731794092025758 0.2890277 0.30461127 prediction 0.412624112915475 Functional Gain - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056369 chr9:1056370 nonsynonymous SNV 0.986 4 22 hm1A_associated_SNPs_22973 0 0 0 6 1056365 1056389 mRNA hsa-miR-424 DMRT2 miRanda miRanda
2192 chr9 1056370 1056370 1 + A T UCEC 1056369 + 1056349 1056389 41 TAAAGAAAGGGAGATGTTGGAAACTTCTCAAGCTGCTGCTC TAAAGAAAGGGAGATGTTGGATACTTCTCAAGCTGCTGCTC < 41bp 0.52548203556802 0.731794092025758 0.2890277 0.30461127 prediction 0.412624112915475 Functional Gain - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056369 chr9:1056370 nonsynonymous SNV 0.986 4 22 hm1A_associated_SNPs_22973 0 0 0 6 1056367 1056389 mRNA hsa-miR-497 DMRT2 miRanda miRanda
2192 chr2 71190414 71190414 1 + G T UCEC 71190413 + 71190393 71190433 41 TCGGGGAGGATCCATCACACAGATCCCCATCCTCACCATGC TCGGGGAGGATCCATCACACATATCCCCATCCTCACCATGC < 41bp 0.563785564399601 0.770046893964355 0.7402822 0.74018335 prediction 0.412522659129507 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71190413 chr2:71190414 nonsynonymous SNV 0.991 4 22 hm1A_associated_SNPs_22984 0 0 0 1 71190413 71190433 mRNA hsa-miR-125a-3p ATP6V1B1 miRanda miRanda
2192 chr17 48598744 48598744 1 + C T COAD 48598743 + 48598723 48598763 41 CTGTTACTGTGGAAGACTACACAGTGTTTGAAAGAAGTCAG CTGTTACTGTGGAAGACTACATAGTGTTTGAAAGAAGTCAG < 41bp 0.590888028338291 0.797146354409788 0.14301214 0.13398767 prediction 0.412516652142994 Functional Gain - MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48598743 chr17:48598744 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_22985 0 0 0 2 48598730 48598751 mRNA hsa-miR-141 MYCBPAP miRanda miRanda
2192 chr17 48598744 48598744 1 + C T COAD 48598743 + 48598723 48598763 41 CTGTTACTGTGGAAGACTACACAGTGTTTGAAAGAAGTCAG CTGTTACTGTGGAAGACTACATAGTGTTTGAAAGAAGTCAG < 41bp 0.590888028338291 0.797146354409788 0.14301214 0.13398767 prediction 0.412516652142994 Functional Gain - MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48598743 chr17:48598744 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_22985 0 0 0 2 48598730 48598751 mRNA hsa-miR-200a MYCBPAP miRanda miRanda
2192 chr9 127982956 127982956 1 + C T LUAD 127982955 + 127982935 127982975 41 GTGCCCAGCCCGTGCAGGACACGAAGCTGCATGTGTTTGAC GTGCCCAGCCCGTGCAGGACATGAAGCTGCATGTGTTTGAC < 41bp 0.628802541618271 0.835036999412235 0.5056255 0.4555609 prediction 0.412468915587928 Functional Gain - RABEPK ENSG00000136933 CDS Human protein_coding chr9:127982955 chr9:127982956 nonsynonymous SNV 0.807 0 22 hm1A_associated_SNPs_22995 0 0 0 1 127982955 127982976 mRNA hsa-miR-505 RABEPK miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312537 16312558 mRNA hsa-miR-17 OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312537 16312558 mRNA hsa-miR-20a OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312537 16312558 mRNA hsa-miR-93 OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312537 16312558 mRNA hsa-miR-106a OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312539 16312558 mRNA hsa-miR-106b OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312532 16312557 mRNA hsa-miR-302a OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312532 16312557 mRNA hsa-miR-302b OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312532 16312557 mRNA hsa-miR-302c OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312532 16312557 mRNA hsa-miR-302d OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312532 16312557 mRNA hsa-miR-372 OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312530 16312557 mRNA hsa-miR-373 OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312537 16312558 mRNA hsa-miR-20b OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312537 16312557 mRNA hsa-miR-520e OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312536 16312557 mRNA hsa-miR-520a-3p OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312537 16312557 mRNA hsa-miR-520b OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312536 16312557 mRNA hsa-miR-520c-3p OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312537 16312558 mRNA hsa-miR-519d OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312530 16312557 mRNA hsa-miR-520d-3p OXNAD1 miRanda miRanda
2192 chr3 16312547 16312547 1 + C T UCEC 16312546 + 16312526 16312566 41 GCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCT GCTGCGTCACTGAGATTGACATTCAGCACTTTGCGCCACCT < 41bp 0.474261736986474 0.706172394802024 0.25650632 0.27372357 prediction 0.412344789604047 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312546 chr3:16312547 nonsynonymous SNV 0.000 0 22 hm1A_associated_SNPs_23016 0 0 0 19 16312541 16312557 mRNA hsa-miR-302e OXNAD1 miRanda miRanda
2192 chr11 85968606 85968606 1 + G T UCEC 85968605 + 85968585 85968625 41 ATGAGCTGAAATTCCATCCAAGAGATCCAAATCTTCTCCTG ATGAGCTGAAATTCCATCCAATAGATCCAAATCTTCTCCTG < 41bp 0.537184774989725 0.743342095627724 0.098566085 0.09170842 prediction 0.412314641275997 Functional Gain - EED ENSG00000074266 CDS Human protein_coding chr11:85968605 chr11:85968606 nonsynonymous SNV 1.000 1 22 hm1A_associated_SNPs_23019 0 0 1 3 85968596 85968623 mRNA hsa-miR-539 EED miRanda miRanda
2192 chr11 85968606 85968606 1 + G T UCEC 85968605 + 85968585 85968625 41 ATGAGCTGAAATTCCATCCAAGAGATCCAAATCTTCTCCTG ATGAGCTGAAATTCCATCCAATAGATCCAAATCTTCTCCTG < 41bp 0.537184774989725 0.743342095627724 0.098566085 0.09170842 prediction 0.412314641275997 Functional Gain - EED ENSG00000074266 CDS Human protein_coding chr11:85968605 chr11:85968606 nonsynonymous SNV 1.000 1 22 hm1A_associated_SNPs_23019 0 0 1 3 85968590 85968613 mRNA hsa-miR-876-5p EED miRanda miRanda
2192 chr11 85968606 85968606 1 + G T UCEC 85968605 + 85968585 85968625 41 ATGAGCTGAAATTCCATCCAAGAGATCCAAATCTTCTCCTG ATGAGCTGAAATTCCATCCAATAGATCCAAATCTTCTCCTG < 41bp 0.537184774989725 0.743342095627724 0.098566085 0.09170842 prediction 0.412314641275997 Functional Gain - EED ENSG00000074266 CDS Human protein_coding chr11:85968605 chr11:85968606 nonsynonymous SNV 1.000 1 22 hm1A_associated_SNPs_23019 0 0 1 3 85968590 85968612 mRNA hsa-miR-216b EED miRanda miRanda
2192 chr10 73121879 73121879 1 + C T COAD 73121878 + 73121858 73121898 41 CCTGGGCTTCTGTGTCACCTACGTCTTCTTCATCACCAGCC CCTGGGCTTCTGTGTCACCTATGTCTTCTTCATCACCAGCC < 41bp 0.658012227324379 0.86405263327631 0.41662273 0.32962173 prediction 0.412080811903862 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73121878 chr10:73121879 synonymous SNV . 0 22 hm1A_associated_SNPs_23049 0 0 0 1 73121878 73121898 mRNA hsa-miR-138 SLC29A3 miRanda miRanda
2192 chr11 43965376 43965376 1 + A C rs535968687 43965378 + 43965358 43965398 41 AACGATCTTTTTACCTGGATATGTCTGTGAGGCTCCTGAAA AACGATCTTTTTACCTGGCTATGTCTGTGAGGCTCCTGAAA < 41bp 0.656912982349255 0.862770129831615 0.11613524 0.14341825 prediction 0.411714294964722 Functional Gain - C11orf96 ENSG00000244953 ncRNA_exonic Human lincRNA chr11:43965378 chr11:43965376 . . 0 19 hm1A_associated_SNPs_23100 0 0 1 2 43965372 43965395 mRNA hsa-miR-28-5p AG2 miRanda miRanda
2192 chr11 43965376 43965376 1 + A C rs535968687 43965378 + 43965358 43965398 41 AACGATCTTTTTACCTGGATATGTCTGTGAGGCTCCTGAAA AACGATCTTTTTACCTGGCTATGTCTGTGAGGCTCCTGAAA < 41bp 0.656912982349255 0.862770129831615 0.11613524 0.14341825 prediction 0.411714294964722 Functional Gain - C11orf96 ENSG00000244953 ncRNA_exonic Human lincRNA chr11:43965378 chr11:43965376 . . 0 19 hm1A_associated_SNPs_23100 0 0 1 2 43965371 43965395 mRNA hsa-miR-708 AG2 miRanda miRanda
2192 chr6 44119652 44119652 1 + C T UCEC 44119651 + 44119631 44119671 41 TGCCTCAGCCTTTATCGGCAACGCCATGGACCTGCTGCGCA TGCCTCAGCCTTTATCGGCAATGCCATGGACCTGCTGCGCA < 41bp 0.609248566351658 0.814954079696238 0.3472965 0.32269576 prediction 0.411411026689161 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44119651 chr6:44119652 synonymous SNV . 0 22 hm1A_associated_SNPs_23139 0 0 1 1 44119647 44119668 mRNA hsa-miR-214 TMEM63B miRanda miRanda
2192 chr17 7464219 7464219 1 + T C rs74875436 7464221 + 7464201 7464241 41 CTGGAGACAGCCAAGAGCTGAGTATATAAAGGAGAGGGAAT CTGGAGACAGCCAAGAGCCGAGTATATAAAGGAGAGGGAAT < 41bp 0.424132887196141 0.705432727959198 0.1182611 0.11852962 prediction 0.410865455918395 Functional Gain - TNFSF12-TNFSF13;TNFSF13 ENSG00000161955;ENSG00000239697;ENSG00000248871 UTR3 Human other chr17:7464221 chr17:7464219 . . 0 19 hm1A_associated_SNPs_23212 0 0 0 2 7464215 7464236 mRNA hsa-miR-211 TNFSF12-TNFSF13 miRanda miRanda
2192 chr17 7464219 7464219 1 + T C rs74875436 7464221 + 7464201 7464241 41 CTGGAGACAGCCAAGAGCTGAGTATATAAAGGAGAGGGAAT CTGGAGACAGCCAAGAGCCGAGTATATAAAGGAGAGGGAAT < 41bp 0.424132887196141 0.705432727959198 0.1182611 0.11852962 prediction 0.410865455918395 Functional Gain - TNFSF12-TNFSF13;TNFSF13 ENSG00000161955;ENSG00000239697;ENSG00000248871 UTR3 Human other chr17:7464221 chr17:7464219 . . 0 19 hm1A_associated_SNPs_23212 0 0 0 2 7464215 7464236 mRNA hsa-miR-211 TNFSF13 miRanda miRanda
2192 chr16 57719665 57719665 1 + A T COAD 57719664 + 57719644 57719684 41 TCCTGGCCCTGGTGGTCTGGAAGATCTTCACCCTGTCCCGT TCCTGGCCCTGGTGGTCTGGATGATCTTCACCCTGTCCCGT < 41bp 0.513758314231708 0.719177375775733 0.33479992 0.35317343 prediction 0.41083812308805 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57719664 chr16:57719665 nonsynonymous SNV 1.000 4 22 hm1A_associated_SNPs_23215 0 0 0 1 57719657 57719679 mRNA hsa-miR-125a-3p GPR97 miRanda miRanda
2192 chr16 50744556 50744556 1 + C T STAD 50744555 + 50744535 50744575 41 GTACCTATGATGGAGCAGAGACGCTCTGCCTGGAGGACATA GTACCTATGATGGAGCAGAGATGCTCTGCCTGGAGGACATA < 41bp 0.512048358906572 0.717396263835493 0.15782794 0.13230869 prediction 0.410695809857843 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50744555 chr16:50744556 nonsynonymous SNV 0.062 3 22 hm1A_associated_SNPs_23229 2 0 0 1 50744538 50744557 mRNA hsa-miR-431 NOD2 miRanda miRanda
2192 chr5 68524147 68524147 1 + T C BLCA 68524149 + 68524129 68524169 41 CACCAGACACTGCAGAAATAATAAAAACATTACCTCAGAAA CACCAGACACTGCAGAAACAATAAAAACATTACCTCAGAAA < 41bp 0.653349340762713 0.858609923858709 0.06893206 0.08352977 prediction 0.410521166191992 Functional Gain - MRPS36 ENSG00000134056 CDS Human protein_coding chr5:68524149 chr5:68524147 nonsynonymous SNV 0.999 0 19 hm1A_associated_SNPs_23251 0 0 1 10 68524145 68524165 mRNA hsa-let-7a MRPS36 miRanda miRanda
2192 chr5 68524147 68524147 1 + T C BLCA 68524149 + 68524129 68524169 41 CACCAGACACTGCAGAAATAATAAAAACATTACCTCAGAAA CACCAGACACTGCAGAAACAATAAAAACATTACCTCAGAAA < 41bp 0.653349340762713 0.858609923858709 0.06893206 0.08352977 prediction 0.410521166191992 Functional Gain - MRPS36 ENSG00000134056 CDS Human protein_coding chr5:68524149 chr5:68524147 nonsynonymous SNV 0.999 0 19 hm1A_associated_SNPs_23251 0 0 1 10 68524145 68524165 mRNA hsa-let-7b MRPS36 miRanda miRanda
2192 chr5 68524147 68524147 1 + T C BLCA 68524149 + 68524129 68524169 41 CACCAGACACTGCAGAAATAATAAAAACATTACCTCAGAAA CACCAGACACTGCAGAAACAATAAAAACATTACCTCAGAAA < 41bp 0.653349340762713 0.858609923858709 0.06893206 0.08352977 prediction 0.410521166191992 Functional Gain - MRPS36 ENSG00000134056 CDS Human protein_coding chr5:68524149 chr5:68524147 nonsynonymous SNV 0.999 0 19 hm1A_associated_SNPs_23251 0 0 1 10 68524145 68524165 mRNA hsa-let-7c MRPS36 miRanda miRanda
2192 chr5 68524147 68524147 1 + T C BLCA 68524149 + 68524129 68524169 41 CACCAGACACTGCAGAAATAATAAAAACATTACCTCAGAAA CACCAGACACTGCAGAAACAATAAAAACATTACCTCAGAAA < 41bp 0.653349340762713 0.858609923858709 0.06893206 0.08352977 prediction 0.410521166191992 Functional Gain - MRPS36 ENSG00000134056 CDS Human protein_coding chr5:68524149 chr5:68524147 nonsynonymous SNV 0.999 0 19 hm1A_associated_SNPs_23251 0 0 1 10 68524145 68524165 mRNA hsa-let-7d MRPS36 miRanda miRanda
2192 chr5 68524147 68524147 1 + T C BLCA 68524149 + 68524129 68524169 41 CACCAGACACTGCAGAAATAATAAAAACATTACCTCAGAAA CACCAGACACTGCAGAAACAATAAAAACATTACCTCAGAAA < 41bp 0.653349340762713 0.858609923858709 0.06893206 0.08352977 prediction 0.410521166191992 Functional Gain - MRPS36 ENSG00000134056 CDS Human protein_coding chr5:68524149 chr5:68524147 nonsynonymous SNV 0.999 0 19 hm1A_associated_SNPs_23251 0 0 1 10 68524145 68524165 mRNA hsa-let-7e MRPS36 miRanda miRanda
2192 chr5 68524147 68524147 1 + T C BLCA 68524149 + 68524129 68524169 41 CACCAGACACTGCAGAAATAATAAAAACATTACCTCAGAAA CACCAGACACTGCAGAAACAATAAAAACATTACCTCAGAAA < 41bp 0.653349340762713 0.858609923858709 0.06893206 0.08352977 prediction 0.410521166191992 Functional Gain - MRPS36 ENSG00000134056 CDS Human protein_coding chr5:68524149 chr5:68524147 nonsynonymous SNV 0.999 0 19 hm1A_associated_SNPs_23251 0 0 1 10 68524145 68524165 mRNA hsa-let-7f MRPS36 miRanda miRanda
2192 chr5 68524147 68524147 1 + T C BLCA 68524149 + 68524129 68524169 41 CACCAGACACTGCAGAAATAATAAAAACATTACCTCAGAAA CACCAGACACTGCAGAAACAATAAAAACATTACCTCAGAAA < 41bp 0.653349340762713 0.858609923858709 0.06893206 0.08352977 prediction 0.410521166191992 Functional Gain - MRPS36 ENSG00000134056 CDS Human protein_coding chr5:68524149 chr5:68524147 nonsynonymous SNV 0.999 0 19 hm1A_associated_SNPs_23251 0 0 1 10 68524145 68524165 mRNA hsa-miR-98 MRPS36 miRanda miRanda
2192 chr5 68524147 68524147 1 + T C BLCA 68524149 + 68524129 68524169 41 CACCAGACACTGCAGAAATAATAAAAACATTACCTCAGAAA CACCAGACACTGCAGAAACAATAAAAACATTACCTCAGAAA < 41bp 0.653349340762713 0.858609923858709 0.06893206 0.08352977 prediction 0.410521166191992 Functional Gain - MRPS36 ENSG00000134056 CDS Human protein_coding chr5:68524149 chr5:68524147 nonsynonymous SNV 0.999 0 19 hm1A_associated_SNPs_23251 0 0 1 10 68524145 68524165 mRNA hsa-let-7g MRPS36 miRanda miRanda
2192 chr5 68524147 68524147 1 + T C BLCA 68524149 + 68524129 68524169 41 CACCAGACACTGCAGAAATAATAAAAACATTACCTCAGAAA CACCAGACACTGCAGAAACAATAAAAACATTACCTCAGAAA < 41bp 0.653349340762713 0.858609923858709 0.06893206 0.08352977 prediction 0.410521166191992 Functional Gain - MRPS36 ENSG00000134056 CDS Human protein_coding chr5:68524149 chr5:68524147 nonsynonymous SNV 0.999 0 19 hm1A_associated_SNPs_23251 0 0 1 10 68524145 68524165 mRNA hsa-let-7i MRPS36 miRanda miRanda
2192 chr5 68524147 68524147 1 + T C BLCA 68524149 + 68524129 68524169 41 CACCAGACACTGCAGAAATAATAAAAACATTACCTCAGAAA CACCAGACACTGCAGAAACAATAAAAACATTACCTCAGAAA < 41bp 0.653349340762713 0.858609923858709 0.06893206 0.08352977 prediction 0.410521166191992 Functional Gain - MRPS36 ENSG00000134056 CDS Human protein_coding chr5:68524149 chr5:68524147 nonsynonymous SNV 0.999 0 19 hm1A_associated_SNPs_23251 0 0 1 10 68524146 68524165 mRNA hsa-miR-202 MRPS36 miRanda miRanda
2192 chr22 20941139 20941139 1 + A C rs544150823 20941141 + 20941121 20941161 41 TTGGGGACCTGCCAAACGAAATCCCACACCTGTACAGAACT TTGGGGACCTGCCAAACGCAATCCCACACCTGTACAGAACT < 41bp 0.405935338508961 0.705026014823308 0.14018002 0.12868145 prediction 0.410052029646615 Functional Gain - MED15 ENSG00000099917 UTR3 Human protein_coding chr22:20941141 chr22:20941139 . . 0 19 hm1A_associated_SNPs_23293 0 0 1 1 20941123 20941145 mRNA hsa-miR-876-5p MED15 miRanda miRanda
2192 chr17 25932770 25932770 1 + C T COAD 25932769 + 25932749 25932789 41 AGGTGATGAACTACCGGCAGACGCGGCATGAGAACGTGGTG AGGTGATGAACTACCGGCAGATGCGGCATGAGAACGTGGTG < 41bp 0.494814856756408 0.705009103369583 0.63348216 0.59327817 prediction 0.410018206739167 Functional Gain - KSR1 ENSG00000141068 CDS Human protein_coding chr17:25932769 chr17:25932770 nonsynonymous SNV 0.895 3 22 hm1A_associated_SNPs_23299 0 0 0 1 25932747 25932771 mRNA hsa-miR-346 KSR1 miRanda miRanda
2192 chr2 177054695 177054695 1 + C T READ 177054694 + 177054674 177054714 41 ACTGCTTGCACCTGAATGACACGCAAGTCAAAATCTGGTTC ACTGCTTGCACCTGAATGACATGCAAGTCAAAATCTGGTTC < 41bp 0.626847821067343 0.831808355911545 0.16196087 0.14971504 prediction 0.409921069688404 Functional Gain - HOXD1 ENSG00000128645 CDS Human protein_coding chr2:177054694 chr2:177054695 nonsynonymous SNV 0.999 5 22 hm1A_associated_SNPs_23311 0 0 0 1 177054675 177054697 mRNA hsa-miR-187 HOXD1 miRanda miRanda
2192 chr7 89909096 89909096 1 + C T rs183657924 89909095 + 89909075 89909115 41 GCACAGCATGAAGAATTACAACTGCATGCAATTGCCACTTT GCACAGCATGAAGAATTACAATTGCATGCAATTGCCACTTT < 41bp 0.495561807834235 0.704960466238931 0.09287301 0.093126446 prediction 0.409920932477861 Functional Gain - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89909095 chr7:89909096 synonymous SNV . 0 22 hm1A_associated_SNPs_23312 0 0 0 4 89909080 89909101 mRNA hsa-miR-33a C7orf63 miRanda miRanda
2192 chr7 89909096 89909096 1 + C T rs183657924 89909095 + 89909075 89909115 41 GCACAGCATGAAGAATTACAACTGCATGCAATTGCCACTTT GCACAGCATGAAGAATTACAATTGCATGCAATTGCCACTTT < 41bp 0.495561807834235 0.704960466238931 0.09287301 0.093126446 prediction 0.409920932477861 Functional Gain - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89909095 chr7:89909096 synonymous SNV . 0 22 hm1A_associated_SNPs_23312 0 0 0 4 89909092 89909116 mRNA hsa-miR-93 C7orf63 miRanda miRanda
2192 chr7 89909096 89909096 1 + C T rs183657924 89909095 + 89909075 89909115 41 GCACAGCATGAAGAATTACAACTGCATGCAATTGCCACTTT GCACAGCATGAAGAATTACAATTGCATGCAATTGCCACTTT < 41bp 0.495561807834235 0.704960466238931 0.09287301 0.093126446 prediction 0.409920932477861 Functional Gain - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89909095 chr7:89909096 synonymous SNV . 0 22 hm1A_associated_SNPs_23312 0 0 0 4 89909091 89909114 mRNA hsa-miR-301a C7orf63 miRanda miRanda
2192 chr7 89909096 89909096 1 + C T rs183657924 89909095 + 89909075 89909115 41 GCACAGCATGAAGAATTACAACTGCATGCAATTGCCACTTT GCACAGCATGAAGAATTACAATTGCATGCAATTGCCACTTT < 41bp 0.495561807834235 0.704960466238931 0.09287301 0.093126446 prediction 0.409920932477861 Functional Gain - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89909095 chr7:89909096 synonymous SNV . 0 22 hm1A_associated_SNPs_23312 0 0 0 4 89909093 89909114 mRNA hsa-miR-454 C7orf63 miRanda miRanda
2192 chr19 22780141 22780141 1 + A C UCEC 22780143 + 22780123 22780163 41 CTACAGGAGTGAAAAAGAAAATTAAAAATTGCAGTAACCCC CTACAGGAGTGAAAAAGACAATTAAAAATTGCAGTAACCCC < 41bp 0.579376719161665 0.784270789315456 0.120076954 0.14520815 prediction 0.409788140307582 Functional Gain - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22780143 chr19:22780141 . . 0 19 hm1A_associated_SNPs_23332 0 0 0 2 22780136 22780158 mRNA hsa-miR-217 LOC440518 miRanda miRanda
2192 chr19 22780141 22780141 1 + A C UCEC 22780143 + 22780123 22780163 41 CTACAGGAGTGAAAAAGAAAATTAAAAATTGCAGTAACCCC CTACAGGAGTGAAAAAGACAATTAAAAATTGCAGTAACCCC < 41bp 0.579376719161665 0.784270789315456 0.120076954 0.14520815 prediction 0.409788140307582 Functional Gain - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22780143 chr19:22780141 . . 0 19 hm1A_associated_SNPs_23332 0 0 0 2 22780126 22780146 mRNA hsa-miR-590-3p LOC440518 miRanda miRanda
2192 chr20 29632659 29632659 1 + A C UCEC 29632661 + 29632641 29632681 41 ACTTAAAATAAGTAAAGAAGAGAGTAAAATTCTTAAAAAGG ACTTAAAATAAGTAAAGACGAGAGTAAAATTCTTAAAAAGG < 41bp 0.553550079025196 0.757933393158268 0.04875371 0.06385836 prediction 0.408766628266144 Functional Gain - FRG1BP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29632661 chr20:29632659 nonsynonymous SNV 0.995 0 19 hm1A_associated_SNPs_23445 0 0 1 2 29632655 29632676 mRNA hsa-miR-186 FRG1B miRanda miRanda
2192 chr20 29632659 29632659 1 + A C UCEC 29632661 + 29632641 29632681 41 ACTTAAAATAAGTAAAGAAGAGAGTAAAATTCTTAAAAAGG ACTTAAAATAAGTAAAGACGAGAGTAAAATTCTTAAAAAGG < 41bp 0.553550079025196 0.757933393158268 0.04875371 0.06385836 prediction 0.408766628266144 Functional Gain - FRG1BP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29632661 chr20:29632659 nonsynonymous SNV 0.995 0 19 hm1A_associated_SNPs_23445 0 0 1 2 29632652 29632672 mRNA hsa-miR-590-3p FRG1B miRanda miRanda
2192 chr10 95552582 95552582 1 + G C BLCA 95552584 + 95552564 95552604 41 CACACCAATGCAACTGTTGAAGACATCTACTGCGAAGGCCC CACACCAATGCAACTGTTCAAGACATCTACTGCGAAGGCCC < 41bp 0.536881634247681 0.741113775591997 0.20302132 0.24928656 prediction 0.408464282688632 Functional Gain - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95552584 chr10:95552582 nonsynonymous SNV 0.994 3 19 hm1A_associated_SNPs_23473 0 0 0 1 95552560 95552584 mRNA hsa-miR-421 LGI1 miRanda miRanda
2192 chr5 86675607 86675607 1 + T C ESCA 86675608 + 86675588 86675628 41 AACACTAATTTAACACACCTATTGAACATACTTTCAGAGCT AACACTAATTTAACACACCCATTGAACATACTTTCAGAGCT < 41bp 0.541059406957274 0.745152931864914 0.05328867 0.72007906 prediction 0.408187049815281 Functional Gain - RASA1 ENSG00000145715 CDS Human protein_coding chr5:86675608 chr5:86675607 nonsynonymous SNV 1.000 4 20 hm1A_associated_SNPs_23514 0 0 1 1 86675597 86675621 mRNA hsa-miR-382 RASA1 miRanda miRanda
2192 chr3 131082269 131082269 1 + G T GBM 131082268 + 131082248 131082288 41 AGGCCTGCCCATCTTTCTGGAGAATTGCTTTATTGGTGCTG AGGCCTGCCCATCTTTCTGGATAATTGCTTTATTGGTGCTG < 41bp 0.519670316389243 0.723677118065023 0.06312984 0.05357966 prediction 0.40801360335156 Functional Gain - NUDT16P1 ENSG00000246082 ncRNA_exonic Human transcribed_unitary_pseudogene chr3:131082268 chr3:131082269 . . 0 22 hm1A_associated_SNPs_23529 0 0 1 4 131082269 131082288 mRNA hsa-miR-29a NUDT16P1 miRanda miRanda
2192 chr3 131082269 131082269 1 + G T GBM 131082268 + 131082248 131082288 41 AGGCCTGCCCATCTTTCTGGAGAATTGCTTTATTGGTGCTG AGGCCTGCCCATCTTTCTGGATAATTGCTTTATTGGTGCTG < 41bp 0.519670316389243 0.723677118065023 0.06312984 0.05357966 prediction 0.40801360335156 Functional Gain - NUDT16P1 ENSG00000246082 ncRNA_exonic Human transcribed_unitary_pseudogene chr3:131082268 chr3:131082269 . . 0 22 hm1A_associated_SNPs_23529 0 0 1 4 131082268 131082288 mRNA hsa-miR-29b NUDT16P1 miRanda miRanda
2192 chr3 131082269 131082269 1 + G T GBM 131082268 + 131082248 131082288 41 AGGCCTGCCCATCTTTCTGGAGAATTGCTTTATTGGTGCTG AGGCCTGCCCATCTTTCTGGATAATTGCTTTATTGGTGCTG < 41bp 0.519670316389243 0.723677118065023 0.06312984 0.05357966 prediction 0.40801360335156 Functional Gain - NUDT16P1 ENSG00000246082 ncRNA_exonic Human transcribed_unitary_pseudogene chr3:131082268 chr3:131082269 . . 0 22 hm1A_associated_SNPs_23529 0 0 1 4 131082257 131082279 mRNA hsa-miR-186 NUDT16P1 miRanda miRanda
2192 chr3 131082269 131082269 1 + G T GBM 131082268 + 131082248 131082288 41 AGGCCTGCCCATCTTTCTGGAGAATTGCTTTATTGGTGCTG AGGCCTGCCCATCTTTCTGGATAATTGCTTTATTGGTGCTG < 41bp 0.519670316389243 0.723677118065023 0.06312984 0.05357966 prediction 0.40801360335156 Functional Gain - NUDT16P1 ENSG00000246082 ncRNA_exonic Human transcribed_unitary_pseudogene chr3:131082268 chr3:131082269 . . 0 22 hm1A_associated_SNPs_23529 0 0 1 4 131082269 131082288 mRNA hsa-miR-29c NUDT16P1 miRanda miRanda
2192 chr1 111031200 111031200 1 + G T UCEC 111031199 + 111031179 111031219 41 ATTGATCTGTCGTACTACACAGGCTCCCTGCACTGGATACC ATTGATCTGTCGTACTACACATGCTCCCTGCACTGGATACC < 41bp 0.534725408637092 0.738664847270195 0.13379744 0.14715067 prediction 0.407878877266207 Functional Gain - CYMP;CYMP-AS1 ENSG00000235407;ENSG00000240194 ncRNA_exonic Human other chr1:111031199 chr1:111031200 . . 0 22 hm1A_associated_SNPs_23553 0 0 0 3 111031193 111031214 mRNA hsa-miR-148a CYMP miRanda miRanda
2192 chr1 111031200 111031200 1 + G T UCEC 111031199 + 111031179 111031219 41 ATTGATCTGTCGTACTACACAGGCTCCCTGCACTGGATACC ATTGATCTGTCGTACTACACATGCTCCCTGCACTGGATACC < 41bp 0.534725408637092 0.738664847270195 0.13379744 0.14715067 prediction 0.407878877266207 Functional Gain - CYMP;CYMP-AS1 ENSG00000235407;ENSG00000240194 ncRNA_exonic Human other chr1:111031199 chr1:111031200 . . 0 22 hm1A_associated_SNPs_23553 0 0 0 3 111031197 111031214 mRNA hsa-miR-152 CYMP miRanda miRanda
2192 chr1 111031200 111031200 1 + G T UCEC 111031199 + 111031179 111031219 41 ATTGATCTGTCGTACTACACAGGCTCCCTGCACTGGATACC ATTGATCTGTCGTACTACACATGCTCCCTGCACTGGATACC < 41bp 0.534725408637092 0.738664847270195 0.13379744 0.14715067 prediction 0.407878877266207 Functional Gain - CYMP;CYMP-AS1 ENSG00000235407;ENSG00000240194 ncRNA_exonic Human other chr1:111031199 chr1:111031200 . . 0 22 hm1A_associated_SNPs_23553 0 0 0 3 111031193 111031214 mRNA hsa-miR-148b CYMP miRanda miRanda
2192 chr2 172337525 172337525 1 + A C LGG 172337527 + 172337507 172337547 41 TGACAGAGACTTGGTGCTACACATAGAGCAGAAACCCAACA TGACAGAGACTTGGTGCTCCACATAGAGCAGAAACCCAACA < 41bp 0.443331615107029 0.703934916972773 0.07204941 0.08999154 prediction 0.407869833945547 Functional Gain - DCAF17 ENSG00000115827 CDS Human protein_coding chr2:172337527 chr2:172337525 synonymous SNV . 0 19 hm1A_associated_SNPs_23555 0 0 0 3 172337502 172337525 mRNA hsa-miR-29a DCAF17 miRanda miRanda
2192 chr2 172337525 172337525 1 + A C LGG 172337527 + 172337507 172337547 41 TGACAGAGACTTGGTGCTACACATAGAGCAGAAACCCAACA TGACAGAGACTTGGTGCTCCACATAGAGCAGAAACCCAACA < 41bp 0.443331615107029 0.703934916972773 0.07204941 0.08999154 prediction 0.407869833945547 Functional Gain - DCAF17 ENSG00000115827 CDS Human protein_coding chr2:172337527 chr2:172337525 synonymous SNV . 0 19 hm1A_associated_SNPs_23555 0 0 0 3 172337497 172337525 mRNA hsa-miR-29b DCAF17 miRanda miRanda
2192 chr2 172337525 172337525 1 + A C LGG 172337527 + 172337507 172337547 41 TGACAGAGACTTGGTGCTACACATAGAGCAGAAACCCAACA TGACAGAGACTTGGTGCTCCACATAGAGCAGAAACCCAACA < 41bp 0.443331615107029 0.703934916972773 0.07204941 0.08999154 prediction 0.407869833945547 Functional Gain - DCAF17 ENSG00000115827 CDS Human protein_coding chr2:172337527 chr2:172337525 synonymous SNV . 0 19 hm1A_associated_SNPs_23555 0 0 0 3 172337504 172337525 mRNA hsa-miR-29c DCAF17 miRanda miRanda
2192 chr19 49638095 49638095 1 + G T LIHC 49638094 + 49638074 49638114 41 CTCCAACACCGGCCCCCAGGAGCAGCTCTTGGCCGAAATGG CTCCAACACCGGCCCCCAGGATCAGCTCTTGGCCGAAATGG < 41bp 0.518354673005943 0.722160008651081 0.73675716 0.73543775 prediction 0.407610671290278 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49638094 chr19:49638095 nonsynonymous SNV 0.972 0 22 hm1A_associated_SNPs_23577 0 0 0 2 49638094 49638117 mRNA hsa-miR-136 PPFIA3 miRanda miRanda
2192 chr19 49638095 49638095 1 + G T LIHC 49638094 + 49638074 49638114 41 CTCCAACACCGGCCCCCAGGAGCAGCTCTTGGCCGAAATGG CTCCAACACCGGCCCCCAGGATCAGCTCTTGGCCGAAATGG < 41bp 0.518354673005943 0.722160008651081 0.73675716 0.73543775 prediction 0.407610671290278 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49638094 chr19:49638095 nonsynonymous SNV 0.972 0 22 hm1A_associated_SNPs_23577 0 0 0 2 49638093 49638105 mRNA hsa-miR-335 PPFIA3 miRanda miRanda
2192 chr16 89611117 89611117 1 + C T ACC 89611116 + 89611096 89611136 41 GAACCGAGCTGACATTTTGGACGGTGCTCTGATGAGGCCAG GAACCGAGCTGACATTTTGGATGGTGCTCTGATGAGGCCAG < 41bp 0.491025197182578 0.703736104621696 0.58172154 0.55493265 prediction 0.407472209243393 Functional Gain - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89611116 chr16:89611117 synonymous SNV . 0 22 hm1A_associated_SNPs_23596 0 0 1 2 89611110 89611131 mRNA hsa-miR-376a SPG7 miRanda miRanda
2192 chr16 89611117 89611117 1 + C T ACC 89611116 + 89611096 89611136 41 GAACCGAGCTGACATTTTGGACGGTGCTCTGATGAGGCCAG GAACCGAGCTGACATTTTGGATGGTGCTCTGATGAGGCCAG < 41bp 0.491025197182578 0.703736104621696 0.58172154 0.55493265 prediction 0.407472209243393 Functional Gain - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89611116 chr16:89611117 synonymous SNV . 0 22 hm1A_associated_SNPs_23596 0 0 1 2 89611109 89611131 mRNA hsa-miR-376b SPG7 miRanda miRanda
2192 chr10 89473853 89473853 1 + A C COAD 89473855 + 89473835 89473875 41 CAGGGCTGCCATTCTTTGAAATATTTGTAGATGCACCTCTA CAGGGCTGCCATTCTTTGCAATATTTGTAGATGCACCTCTA < 41bp 0.421737970643681 0.703715405225618 0.039004624 0.049850613 prediction 0.407430810451236 Functional Gain - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89473855 chr10:89473853 nonsynonymous SNV 1.000 4 19 hm1A_associated_SNPs_23599 0 0 1 1 89473852 89473874 mRNA hsa-miR-18b PAPSS2 miRanda miRanda
2192 chr2 192548993 192548993 1 + A C UCEC 192548995 + 192548975 192549015 41 ATAATTCCATGAATAGTAATATGGGTACAGGTACATTTGGA ATAATTCCATGAATAGTACTATGGGTACAGGTACATTTGGA < 41bp 0.442113656065673 0.703500936590398 0.12643471 0.15506735 prediction 0.407001873180797 Functional Gain - NABP1 ENSG00000173559 CDS Human protein_coding chr2:192548995 chr2:192548993 nonsynonymous SNV 0.683 0 19 hm1A_associated_SNPs_23661 0 0 1 1 192548985 192549006 mRNA hsa-miR-486-5p OBFC2A miRanda miRanda
2192 chr20 42196612 42196612 1 + G T UCEC 42196611 + 42196591 42196631 41 CTATGCAGTGAAGGTACTACAGAAAAAGTCCATCTTAAAGA CTATGCAGTGAAGGTACTACATAAAAAGTCCATCTTAAAGA < 41bp 0.55569114087183 0.759188951309096 0.26460677 0.20195037 prediction 0.406995620874533 Functional Gain - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42196611 chr20:42196612 nonsynonymous SNV 1.000 1 22 hm1A_associated_SNPs_23663 0 0 1 3 42196600 42196624 mRNA hsa-miR-135a SGK2 miRanda miRanda
2192 chr20 42196612 42196612 1 + G T UCEC 42196611 + 42196591 42196631 41 CTATGCAGTGAAGGTACTACAGAAAAAGTCCATCTTAAAGA CTATGCAGTGAAGGTACTACATAAAAAGTCCATCTTAAAGA < 41bp 0.55569114087183 0.759188951309096 0.26460677 0.20195037 prediction 0.406995620874533 Functional Gain - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42196611 chr20:42196612 nonsynonymous SNV 1.000 1 22 hm1A_associated_SNPs_23663 0 0 1 3 42196604 42196624 mRNA hsa-miR-378 SGK2 miRanda miRanda
2192 chr20 42196612 42196612 1 + G T UCEC 42196611 + 42196591 42196631 41 CTATGCAGTGAAGGTACTACAGAAAAAGTCCATCTTAAAGA CTATGCAGTGAAGGTACTACATAAAAAGTCCATCTTAAAGA < 41bp 0.55569114087183 0.759188951309096 0.26460677 0.20195037 prediction 0.406995620874533 Functional Gain - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42196611 chr20:42196612 nonsynonymous SNV 1.000 1 22 hm1A_associated_SNPs_23663 0 0 1 3 42196603 42196624 mRNA hsa-miR-422a SGK2 miRanda miRanda
2192 chr11 44640923 44640923 1 + A C rs116250454 44640925 + 44640905 44640945 41 TCTCTTAGCAACTCAGAGAAAAATGCTCCCCACAGCGTCCC TCTCTTAGCAACTCAGAGCAAAATGCTCCCCACAGCGTCCC < 41bp 0.421960608872916 0.703101793333477 0.23213518 0.25310928 prediction 0.406203586666954 Functional Gain - CD82 ENSG00000085117 UTR3 Human protein_coding chr11:44640925 chr11:44640923 . . 0 19 hm1A_associated_SNPs_23758 0 0 0 1 44640915 44640938 mRNA hsa-miR-491-5p CD82 miRanda miRanda
2192 chr22 42670293 42670293 1 + G T rs1001586 42670292 + 42670272 42670312 41 CTGTCCCCTTGCAAAGCACAAGGATACTGAGAGTGCACAAA CTGTCCCCTTGCAAAGCACAATGATACTGAGAGTGCACAAA < 41bp 0.472058108005314 0.702826320909242 0.21315265 0.22884971 prediction 0.405652641818483 Functional Gain - OGFRP1 ENSG00000182057 ncRNA_exonic Human lincRNA chr22:42670292 chr22:42670293 . . 0 22 hm1A_associated_SNPs_23829 0 0 0 1 42670288 42670312 mRNA hsa-miR-96 LOC388906 miRanda miRanda
2192 chr9 135554239 135554239 1 + G C BLCA 135554241 + 135554221 135554261 41 GATCTCCAAAGCAGGGCTGAATGTTCACAATTCCCATGTCA GATCTCCAAAGCAGGGCTCAATGTTCACAATTCCCATGTCA < 41bp 0.607729987291478 0.810380349693582 0.1004844 0.114092976 prediction 0.405300724804208 Functional Gain - GTF3C4 ENSG00000125484 CDS Human protein_coding chr9:135554241 chr9:135554239 synonymous SNV . 0 19 hm1A_associated_SNPs_23880 0 0 1 1 135554224 135554246 mRNA hsa-miR-543 GTF3C4 miRanda miRanda
2192 chr12 77220765 77220765 1 + T C UCEC 77220767 + 77220747 77220787 41 TATAGCAGACCTAAATATTGATTCTTGGCTCATTAAAGGGC TATAGCAGACCTAAATATCGATTCTTGGCTCATTAAAGGGC < 41bp 0.383909950427313 0.702490368617704 0.10449785 0.23717114 prediction 0.404980737235408 Functional Gain - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77220767 chr12:77220765 synonymous SNV . 0 19 hm1A_associated_SNPs_23923 0 0 1 1 77220747 77220766 mRNA hsa-miR-590-3p ZDHHC17 miRanda miRanda
2192 chr1 76254929 76254929 1 + T C LUAD 76254931 + 76254911 76254951 41 TGGGACAACTTCATCGCATGAATAGAGAAGAGATTCTGGCA TGGGACAACTTCATCGCACGAATAGAGAAGAGATTCTGGCA < 41bp 0.652226713453571 0.854559931454281 0.102440655 0.114228636 prediction 0.40466643600142 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76254931 chr1:76254929 nonsynonymous SNV 0.998 1 19 hm1A_associated_SNPs_23964 0 0 1 1 76254925 76254946 mRNA hsa-miR-216b RABGGTB miRanda miRanda
2192 chr13 25144712 25144712 1 + A C rs3742169 25144714 + 25144694 25144734 41 TACATAGATGTGTTTAACACAGCCCCTGCTGGTAACCAAGG TACATAGATGTGTTTAACCCAGCCCCTGCTGGTAACCAAGG < 41bp 0.583890805835656 0.786211714271921 0.08524543 0.0879024 prediction 0.404641816872531 Functional Gain - PARP4;TPTE2P6 ENSG00000243008;ENSG00000244615 ncRNA_exonic Human other chr13:25144714 chr13:25144712 . . 0 19 hm1A_associated_SNPs_23967 0 0 0 1 25144704 25144725 mRNA hsa-miR-214 LOC374491 miRanda miRanda
2192 chr17 18638692 18638692 1 + G T LIHC 18638691 + 18638671 18638711 41 TGCTGCCTTCTGGCTTTCCAAGAAGGAAAACGCCATCCGGA TGCTGCCTTCTGGCTTTCCAATAAGGAAAACGCCATCCGGA < 41bp 0.612999323228077 0.815304802241947 0.22819933 0.17830849 prediction 0.40461095802774 Functional Gain - TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18638691 chr17:18638692 nonsynonymous SNV 0.995 2 22 hm1A_associated_SNPs_23969 0 0 0 1 18638684 18638707 mRNA hsa-miR-135b TRIM16L miRanda miRanda
2192 chr19 14827015 14827015 1 + T C UCEC 14827017 + 14826997 14827037 41 GGAGCCTGTATAGAGATGTGATGCTGGAGAACTACAGGAAC GGAGCCTGTATAGAGATGCGATGCTGGAGAACTACAGGAAC < 41bp 0.671991205377166 0.874206507098606 0.12828556 0.34177688 prediction 0.40443060344288 Functional Gain - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14827017 chr19:14827015 nonsynonymous SNV 0.998 3 19 hm1A_associated_SNPs_23984 0 0 1 1 14827004 14827024 mRNA hsa-miR-338-3p ZNF333 miRanda miRanda
2192 chrX 1407749 1407749 1 + C T LUSC 1407748 + 1407728 1407768 41 GGGTCCGACGGCCCCCCGTGACGTCCAGTATTTTTTGTACA GGGTCCGACGGCCCCCCGTGATGTCCAGTATTTTTTGTACA < 41bp 0.515918032045773 0.718038938268968 0.4787683 0.2527138 prediction 0.404241812446389 Functional Gain - CSF2RA ENSG00000198223 CDS Human protein_coding chrX:1407748 chrX:1407749 synonymous SNV . 0 22 hm1A_associated_SNPs_24010 0 0 0 3 1407740 1407760 mRNA hsa-miR-200b CSF2RA miRanda miRanda
2192 chrX 1407749 1407749 1 + C T LUSC 1407748 + 1407728 1407768 41 GGGTCCGACGGCCCCCCGTGACGTCCAGTATTTTTTGTACA GGGTCCGACGGCCCCCCGTGATGTCCAGTATTTTTTGTACA < 41bp 0.515918032045773 0.718038938268968 0.4787683 0.2527138 prediction 0.404241812446389 Functional Gain - CSF2RA ENSG00000198223 CDS Human protein_coding chrX:1407748 chrX:1407749 synonymous SNV . 0 22 hm1A_associated_SNPs_24010 0 0 0 3 1407739 1407760 mRNA hsa-miR-200c CSF2RA miRanda miRanda
2192 chrX 1407749 1407749 1 + C T LUSC 1407748 + 1407728 1407768 41 GGGTCCGACGGCCCCCCGTGACGTCCAGTATTTTTTGTACA GGGTCCGACGGCCCCCCGTGATGTCCAGTATTTTTTGTACA < 41bp 0.515918032045773 0.718038938268968 0.4787683 0.2527138 prediction 0.404241812446389 Functional Gain - CSF2RA ENSG00000198223 CDS Human protein_coding chrX:1407748 chrX:1407749 synonymous SNV . 0 22 hm1A_associated_SNPs_24010 0 0 0 3 1407739 1407760 mRNA hsa-miR-429 CSF2RA miRanda miRanda
2192 chr16 56686988 56686988 1 + G T rs144207634 56686987 + 56686967 56687007 41 GCTGTGCCTGATGTTGGGAGAGCCCTGCTCCCAGACATAAA GCTGTGCCTGATGTTGGGAGATCCCTGCTCCCAGACATAAA < 41bp 0.574280222718976 0.776346353732041 0.1911943 0.1996943 prediction 0.404132262026129 Functional Gain - MT1B ENSG00000169688 CDS Human protein_coding chr16:56686987 chr16:56686988 nonsynonymous SNV 0.000 1 22 hm1A_associated_SNPs_24024 0 0 0 2 56686982 56687003 mRNA hsa-miR-330-5p MT1B miRanda miRanda
2192 chr16 56686988 56686988 1 + G T rs144207634 56686987 + 56686967 56687007 41 GCTGTGCCTGATGTTGGGAGAGCCCTGCTCCCAGACATAAA GCTGTGCCTGATGTTGGGAGATCCCTGCTCCCAGACATAAA < 41bp 0.574280222718976 0.776346353732041 0.1911943 0.1996943 prediction 0.404132262026129 Functional Gain - MT1B ENSG00000169688 CDS Human protein_coding chr16:56686987 chr16:56686988 nonsynonymous SNV 0.000 1 22 hm1A_associated_SNPs_24024 0 0 0 2 56686984 56687003 mRNA hsa-miR-326 MT1B miRanda miRanda
2192 chr19 55045010 55045010 1 + C T GBM 55045009 + 55044989 55045029 41 CCTGTGGTTCCCCTAGGAGGACGTGTGACTCTCTCCTGTCA CCTGTGGTTCCCCTAGGAGGATGTGTGACTCTCTCCTGTCA < 41bp 0.509223431268133 0.711225459785109 0.3302967 0.20161945 prediction 0.404004057033952 Functional Gain - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55045009 chr19:55045010 nonsynonymous SNV 0.204 0 22 hm1A_associated_SNPs_24035 0 0 0 1 55045004 55045025 mRNA hsa-miR-185 KIR3DX1 miRanda miRanda
2192 chr2 242164473 242164473 1 + T C rs114946503 242164475 + 242164455 242164495 41 GTTTTCCACGCTGGATCATAATGTGACGTGCAGTTCTGCCC GTTTTCCACGCTGGATCACAATGTGACGTGCAGTTCTGCCC < 41bp 0.422422813556932 0.701840969669813 0.04919845 0.057320476 prediction 0.403681939339626 Functional Gain - ANO7 ENSG00000146205 UTR3 Human protein_coding chr2:242164475 chr2:242164473 . . 0 19 hm1A_associated_SNPs_24065 0 0 0 2 242164457 242164481 mRNA hsa-miR-23a ANO7 miRanda miRanda
2192 chr2 242164473 242164473 1 + T C rs114946503 242164475 + 242164455 242164495 41 GTTTTCCACGCTGGATCATAATGTGACGTGCAGTTCTGCCC GTTTTCCACGCTGGATCACAATGTGACGTGCAGTTCTGCCC < 41bp 0.422422813556932 0.701840969669813 0.04919845 0.057320476 prediction 0.403681939339626 Functional Gain - ANO7 ENSG00000146205 UTR3 Human protein_coding chr2:242164475 chr2:242164473 . . 0 19 hm1A_associated_SNPs_24065 0 0 0 2 242164457 242164481 mRNA hsa-miR-23b ANO7 miRanda miRanda
2192 chr20 57015985 57015985 1 + T C KIRC 57015987 + 57015967 57016007 41 ATGTAGAAATAAATAAAATTATATCCACAACTGCATCAAAG ATGTAGAAATAAATAAAACTATATCCACAACTGCATCAAAG < 41bp 0.406910291043104 0.701604322578662 0.022295266 0.02625984 prediction 0.403208645157324 Functional Gain - VAPB ENSG00000124164 CDS Human protein_coding chr20:57015987 chr20:57015985 nonsynonymous SNV 0.998 1 19 hm1A_associated_SNPs_24114 0 0 1 1 57015967 57015987 mRNA hsa-miR-590-3p VAPB miRanda miRanda
2192 chr5 162868277 162868277 1 + C T LIHC 162868276 + 162868256 162868296 41 GTTGGAAAGTCAAAGCTACTACTGCCTTTCAATTTCTGCAA GTTGGAAAGTCAAAGCTACTATTGCCTTTCAATTTCTGCAA < 41bp 0.497770790022776 0.701527721912847 0.07259476 0.059189886 prediction 0.403055443825694 Functional Gain - CCNG1 ENSG00000113328 CDS Human protein_coding chr5:162868276 chr5:162868277 nonsynonymous SNV 1.000 3 22 hm1A_associated_SNPs_24134 0 0 1 1 162868264 162868287 mRNA hsa-miR-488 CCNG1 miRanda miRanda
2192 chr6 41318578 41318578 1 + T C rs115509322 41318580 + 41318560 41318600 41 AAGGACTAAGATAAGCGATGATGATGATGAACACACTTTGT AAGGACTAAGATAAGCGACGATGATGATGAACACACTTTGT < 41bp 0.398500692958387 0.701527045392097 0.1106686 0.15100998 prediction 0.403054090784194 Functional Gain - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41318580 chr6:41318578 synonymous SNV . 0 19 hm1A_associated_SNPs_24135 0 0 0 1 41318576 41318598 mRNA hsa-miR-382 NCR2 miRanda miRanda
2192 chr6 37449250 37449250 1 + G C rs182692384 37449252 + 37449232 37449272 41 ATATCAGTGTGTCTTGCAGAATCTTGGATCATTAAAGATAA ATATCAGTGTGTCTTGCACAATCTTGGATCATTAAAGATAA < 41bp 0.636808720548119 0.838229196797525 0.026560187 0.023566425 prediction 0.40284095249881 Functional Gain - CMTR1 ENSG00000137200 UTR3 Human protein_coding chr6:37449252 chr6:37449250 . . 0 19 hm1A_associated_SNPs_24161 0 0 1 1 37449232 37449253 mRNA hsa-miR-544 FTSJD2 miRanda miRanda
2192 chr1 202273735 202273735 1 + A C UCEC 202273737 + 202273717 202273757 41 CCCATCGGGGATGTGCCAACAGCTGCCCAGGCTCCGAGTCC CCCATCGGGGATGTGCCACCAGCTGCCCAGGCTCCGAGTCC < 41bp 0.464214435773475 0.701368812087597 0.25076872 0.308086 prediction 0.402737624175194 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202273737 chr1:202273735 nonsynonymous SNV 1.000 1 19 hm1A_associated_SNPs_24172 0 0 0 2 202273714 202273736 mRNA hsa-miR-96 LGR6 miRanda miRanda
2192 chr1 202273735 202273735 1 + A C UCEC 202273737 + 202273717 202273757 41 CCCATCGGGGATGTGCCAACAGCTGCCCAGGCTCCGAGTCC CCCATCGGGGATGTGCCACCAGCTGCCCAGGCTCCGAGTCC < 41bp 0.464214435773475 0.701368812087597 0.25076872 0.308086 prediction 0.402737624175194 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202273737 chr1:202273735 nonsynonymous SNV 1.000 1 19 hm1A_associated_SNPs_24172 0 0 0 2 202273715 202273736 mRNA hsa-miR-1271 LGR6 miRanda miRanda
2192 chr19 41450625 41450625 1 + G C GBM 41450627 + 41450607 41450647 41 CTTCCTCAGGACACGGAAGTATTTCTCATCCTGAGCACTGC CTTCCTCAGGACACGGAACTATTTCTCATCCTGAGCACTGC < 41bp 0.540358226929931 0.741673342164144 0.104571134 0.13535729 prediction 0.402630230468425 Functional Gain - CYP2B7P ENSG00000256612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:41450627 chr19:41450625 . . 0 19 hm1A_associated_SNPs_24182 0 0 0 2 41450618 41450638 mRNA hsa-miR-185 CYP2B7P1 miRanda miRanda
2192 chr19 41450625 41450625 1 + G C GBM 41450627 + 41450607 41450647 41 CTTCCTCAGGACACGGAAGTATTTCTCATCCTGAGCACTGC CTTCCTCAGGACACGGAACTATTTCTCATCCTGAGCACTGC < 41bp 0.540358226929931 0.741673342164144 0.104571134 0.13535729 prediction 0.402630230468425 Functional Gain - CYP2B7P ENSG00000256612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:41450627 chr19:41450625 . . 0 19 hm1A_associated_SNPs_24182 0 0 0 2 41450616 41450634 mRNA hsa-miR-539 CYP2B7P1 miRanda miRanda
2192 chr10 95556903 95556903 1 + G T UCEC 95556902 + 95556882 95556922 41 CAATGACATTGAAACATTCAAGATTGAAAACAACTGGTACT CAATGACATTGAAACATTCAATATTGAAAACAACTGGTACT < 41bp 0.497174688798809 0.701003610866161 0.052978814 0.04495856 prediction 0.402007221732322 Functional Gain - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95556902 chr10:95556903 nonsynonymous SNV 1.000 1 22 hm1A_associated_SNPs_24260 0 0 0 3 95556898 95556919 mRNA hsa-miR-199b-5p LGI1 miRanda miRanda
2192 chr10 95556903 95556903 1 + G T UCEC 95556902 + 95556882 95556922 41 CAATGACATTGAAACATTCAAGATTGAAAACAACTGGTACT CAATGACATTGAAACATTCAATATTGAAAACAACTGGTACT < 41bp 0.497174688798809 0.701003610866161 0.052978814 0.04495856 prediction 0.402007221732322 Functional Gain - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95556902 chr10:95556903 nonsynonymous SNV 1.000 1 22 hm1A_associated_SNPs_24260 0 0 0 3 95556897 95556920 mRNA hsa-miR-145 LGI1 miRanda miRanda
2192 chr10 95556903 95556903 1 + G T UCEC 95556902 + 95556882 95556922 41 CAATGACATTGAAACATTCAAGATTGAAAACAACTGGTACT CAATGACATTGAAACATTCAATATTGAAAACAACTGGTACT < 41bp 0.497174688798809 0.701003610866161 0.052978814 0.04495856 prediction 0.402007221732322 Functional Gain - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95556902 chr10:95556903 nonsynonymous SNV 1.000 1 22 hm1A_associated_SNPs_24260 0 0 0 3 95556894 95556918 mRNA hsa-miR-382 LGI1 miRanda miRanda
2192 chr2 71189973 71189973 1 + G T COAD 71189972 + 71189952 71189992 41 ATTCCTTGCCTACCAGTGTGAGAAGCATGTGCTGGTCATAC ATTCCTTGCCTACCAGTGTGATAAGCATGTGCTGGTCATAC < 41bp 0.517506407193092 0.718426866987625 0.18118864 0.14023688 prediction 0.401840919589067 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71189972 chr2:71189973 nonsynonymous SNV 1.000 1 22 hm1A_associated_SNPs_24287 0 0 0 2 71189953 71189974 mRNA hsa-miR-342-3p ATP6V1B1 miRanda miRanda
2192 chr2 71189973 71189973 1 + G T COAD 71189972 + 71189952 71189992 41 ATTCCTTGCCTACCAGTGTGAGAAGCATGTGCTGGTCATAC ATTCCTTGCCTACCAGTGTGATAAGCATGTGCTGGTCATAC < 41bp 0.517506407193092 0.718426866987625 0.18118864 0.14023688 prediction 0.401840919589067 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71189972 chr2:71189973 nonsynonymous SNV 1.000 1 22 hm1A_associated_SNPs_24287 0 0 0 2 71189971 71189994 mRNA hsa-miR-411 ATP6V1B1 miRanda miRanda
2192 chr3 9710465 9710465 1 + C T rs375826804 9710464 + 9710444 9710484 41 GTATGGACGCTCAGGCTACAACTATTTTTTCTCAGGTGAAT GTATGGACGCTCAGGCTACAATTATTTTTTCTCAGGTGAAT < 41bp 0.617009544280451 0.817911328471212 0.11938831 0.07595441 prediction 0.401803568381522 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9710464 chr3:9710465 nonsynonymous SNV . 0 22 hm1A_associated_SNPs_24290 0 0 1 2 9710459 9710478 mRNA hsa-miR-125b MTMR14 miRanda miRanda
2192 chr3 9710465 9710465 1 + C T rs375826804 9710464 + 9710444 9710484 41 GTATGGACGCTCAGGCTACAACTATTTTTTCTCAGGTGAAT GTATGGACGCTCAGGCTACAATTATTTTTTCTCAGGTGAAT < 41bp 0.617009544280451 0.817911328471212 0.11938831 0.07595441 prediction 0.401803568381522 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9710464 chr3:9710465 nonsynonymous SNV . 0 22 hm1A_associated_SNPs_24290 0 0 1 2 9710458 9710478 mRNA hsa-miR-125a-5p MTMR14 miRanda miRanda
2192 chr8 67405952 67405952 1 + G T STAD 67405951 + 67405931 67405971 41 CACCACCGTGATTCCTTCCAAGGGTGAGTGAAATTGCCCTT CACCACCGTGATTCCTTCCAATGGTGAGTGAAATTGCCCTT < 41bp 0.553853120678918 0.754738409177877 0.17298043 0.18539226 prediction 0.401770576997918 Functional Gain - C8orf46 ENSG00000169085 CDS Human protein_coding chr8:67405951 chr8:67405952 nonsynonymous SNV 1.000 4 22 hm1A_associated_SNPs_24294 0 0 0 3 67405942 67405953 mRNA hsa-miR-184 C8orf46 miRanda miRanda
2192 chr8 67405952 67405952 1 + G T STAD 67405951 + 67405931 67405971 41 CACCACCGTGATTCCTTCCAAGGGTGAGTGAAATTGCCCTT CACCACCGTGATTCCTTCCAATGGTGAGTGAAATTGCCCTT < 41bp 0.553853120678918 0.754738409177877 0.17298043 0.18539226 prediction 0.401770576997918 Functional Gain - C8orf46 ENSG00000169085 CDS Human protein_coding chr8:67405951 chr8:67405952 nonsynonymous SNV 1.000 4 22 hm1A_associated_SNPs_24294 0 0 0 3 67405946 67405953 mRNA hsa-miR-378 C8orf46 miRanda miRanda
2192 chr8 67405952 67405952 1 + G T STAD 67405951 + 67405931 67405971 41 CACCACCGTGATTCCTTCCAAGGGTGAGTGAAATTGCCCTT CACCACCGTGATTCCTTCCAATGGTGAGTGAAATTGCCCTT < 41bp 0.553853120678918 0.754738409177877 0.17298043 0.18539226 prediction 0.401770576997918 Functional Gain - C8orf46 ENSG00000169085 CDS Human protein_coding chr8:67405951 chr8:67405952 nonsynonymous SNV 1.000 4 22 hm1A_associated_SNPs_24294 0 0 0 3 67405943 67405953 mRNA hsa-miR-422a C8orf46 miRanda miRanda
2192 chrX 68750266 68750266 1 + C T rs183928328 68750265 + 68750245 68750285 41 TGCCCATATCCCTACAGGCGACGGCAGACAGTGCAATGGCC TGCCCATATCCCTACAGGCGATGGCAGACAGTGCAATGGCC < 41bp 0.660307168633863 0.861123745609715 0.36665586 0.3708654 prediction 0.401633153951704 Functional Gain - FAM155B ENSG00000130054 UTR3 Human protein_coding chrX:68750265 chrX:68750266 . . 0 22 hm1A_associated_SNPs_24309 0 0 0 1 68750254 68750274 mRNA hsa-miR-346 FAM155B miRanda miRanda
2192 chr4 158284094 158284094 1 + G C BLCA 158284096 + 158284076 158284116 41 ACGAATGAAGGTGGCAAAGAATGCACAGAATATTAACCCAT ACGAATGAAGGTGGCAAACAATGCACAGAATATTAACCCAT < 41bp 0.486599411917574 0.700804144489934 0.48325992 0.47382525 prediction 0.401608288979867 Functional Gain - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158284096 chr4:158284094 nonsynonymous SNV 1.000 1 19 hm1A_associated_SNPs_24313 0 0 0 2 158284080 158284101 mRNA hsa-miR-33a GRIA2 miRanda miRanda
2192 chr4 158284094 158284094 1 + G C BLCA 158284096 + 158284076 158284116 41 ACGAATGAAGGTGGCAAAGAATGCACAGAATATTAACCCAT ACGAATGAAGGTGGCAAACAATGCACAGAATATTAACCCAT < 41bp 0.486599411917574 0.700804144489934 0.48325992 0.47382525 prediction 0.401608288979867 Functional Gain - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158284096 chr4:158284094 nonsynonymous SNV 1.000 1 19 hm1A_associated_SNPs_24313 0 0 0 2 158284081 158284101 mRNA hsa-miR-33b GRIA2 miRanda miRanda
2192 chr14 76550346 76550346 1 + C T rs997237 76550345 + 76550325 76550365 41 GGCCCTTTGTGACCTTAGTGACGCAGCACTGCCACCTGCAT GGCCCTTTGTGACCTTAGTGATGCAGCACTGCCACCTGCAT < 41bp 0.514814162232613 0.715582832866639 0.29765308 0.25367936 prediction 0.401537341268051 Functional Gain - IFT43 ENSG00000119650 UTR3 Human protein_coding chr14:76550345 chr14:76550346 . . 0 22 hm1A_associated_SNPs_24324 0 0 0 4 76550333 76550358 mRNA hsa-miR-34a C14orf179 miRanda miRanda
2192 chr14 76550346 76550346 1 + C T rs997237 76550345 + 76550325 76550365 41 GGCCCTTTGTGACCTTAGTGACGCAGCACTGCCACCTGCAT GGCCCTTTGTGACCTTAGTGATGCAGCACTGCCACCTGCAT < 41bp 0.514814162232613 0.715582832866639 0.29765308 0.25367936 prediction 0.401537341268051 Functional Gain - IFT43 ENSG00000119650 UTR3 Human protein_coding chr14:76550345 chr14:76550346 . . 0 22 hm1A_associated_SNPs_24324 0 0 0 4 76550335 76550358 mRNA hsa-miR-34c-5p C14orf179 miRanda miRanda
2192 chr14 76550346 76550346 1 + C T rs997237 76550345 + 76550325 76550365 41 GGCCCTTTGTGACCTTAGTGACGCAGCACTGCCACCTGCAT GGCCCTTTGTGACCTTAGTGATGCAGCACTGCCACCTGCAT < 41bp 0.514814162232613 0.715582832866639 0.29765308 0.25367936 prediction 0.401537341268051 Functional Gain - IFT43 ENSG00000119650 UTR3 Human protein_coding chr14:76550345 chr14:76550346 . . 0 22 hm1A_associated_SNPs_24324 0 0 0 4 76550338 76550358 mRNA hsa-miR-449a C14orf179 miRanda miRanda
2192 chr14 76550346 76550346 1 + C T rs997237 76550345 + 76550325 76550365 41 GGCCCTTTGTGACCTTAGTGACGCAGCACTGCCACCTGCAT GGCCCTTTGTGACCTTAGTGATGCAGCACTGCCACCTGCAT < 41bp 0.514814162232613 0.715582832866639 0.29765308 0.25367936 prediction 0.401537341268051 Functional Gain - IFT43 ENSG00000119650 UTR3 Human protein_coding chr14:76550345 chr14:76550346 . . 0 22 hm1A_associated_SNPs_24324 0 0 0 4 76550338 76550358 mRNA hsa-miR-449b C14orf179 miRanda miRanda
2192 chr11 62530374 62530374 1 + A C UCEC 62530376 + 62530356 62530396 41 CTGTCACCACCATTGACAATATTGGTGCTGGTGTGATCCAG CTGTCACCACCATTGACACTATTGGTGCTGGTGTGATCCAG < 41bp 0.678536821357299 0.87925958317217 0.154975 0.14043498 prediction 0.401445523629743 Functional Gain - POLR2G ENSG00000168002 CDS Human protein_coding chr11:62530376 chr11:62530374 nonsynonymous SNV 1.000 1 19 hm1A_associated_SNPs_24331 0 0 1 3 62530362 62530385 mRNA hsa-miR-29a POLR2G miRanda miRanda
2192 chr11 62530374 62530374 1 + A C UCEC 62530376 + 62530356 62530396 41 CTGTCACCACCATTGACAATATTGGTGCTGGTGTGATCCAG CTGTCACCACCATTGACACTATTGGTGCTGGTGTGATCCAG < 41bp 0.678536821357299 0.87925958317217 0.154975 0.14043498 prediction 0.401445523629743 Functional Gain - POLR2G ENSG00000168002 CDS Human protein_coding chr11:62530376 chr11:62530374 nonsynonymous SNV 1.000 1 19 hm1A_associated_SNPs_24331 0 0 1 3 62530364 62530385 mRNA hsa-miR-29b POLR2G miRanda miRanda
2192 chr11 62530374 62530374 1 + A C UCEC 62530376 + 62530356 62530396 41 CTGTCACCACCATTGACAATATTGGTGCTGGTGTGATCCAG CTGTCACCACCATTGACACTATTGGTGCTGGTGTGATCCAG < 41bp 0.678536821357299 0.87925958317217 0.154975 0.14043498 prediction 0.401445523629743 Functional Gain - POLR2G ENSG00000168002 CDS Human protein_coding chr11:62530376 chr11:62530374 nonsynonymous SNV 1.000 1 19 hm1A_associated_SNPs_24331 0 0 1 3 62530362 62530385 mRNA hsa-miR-29c POLR2G miRanda miRanda
2192 chr22 46725365 46725365 1 + C T STAD 46725364 + 46725344 46725384 41 CTGCGATACCCCAGAAGCACACGTGGCTGTAGGATCTGAAA CTGCGATACCCCAGAAGCACATGTGGCTGTAGGATCTGAAA < 41bp 0.46636345027047 0.700671494112656 0.28623968 0.32171738 prediction 0.401342988225312 Functional Gain - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46725364 chr22:46725365 synonymous SNV . 0 22 hm1A_associated_SNPs_24344 0 0 1 2 46725340 46725367 mRNA hsa-miR-187 GTSE1 miRanda miRanda
2192 chr22 46725365 46725365 1 + C T STAD 46725364 + 46725344 46725384 41 CTGCGATACCCCAGAAGCACACGTGGCTGTAGGATCTGAAA CTGCGATACCCCAGAAGCACATGTGGCTGTAGGATCTGAAA < 41bp 0.46636345027047 0.700671494112656 0.28623968 0.32171738 prediction 0.401342988225312 Functional Gain - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46725364 chr22:46725365 synonymous SNV . 0 22 hm1A_associated_SNPs_24344 0 0 1 2 46725345 46725365 mRNA hsa-miR-218 GTSE1 miRanda miRanda
2192 chr7 77200466 77200466 1 + A C BRCA 77200468 + 77200448 77200488 41 CACTGGAGAAAAAGAAGAAAATGTTAAAAAGAACAGATACA CACTGGAGAAAAAGAAGACAATGTTAAAAAGAACAGATACA < 41bp 0.589653271715394 0.790300558198406 0.06041196 0.08261618 prediction 0.401294572966025 Functional Gain - PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77200468 chr7:77200466 nonsynonymous SNV 1.000 2 19 hm1A_associated_SNPs_24352 0 0 1 1 77200452 77200473 mRNA hsa-miR-543 PTPN12 miRanda miRanda
2192 chr20 45363922 45363922 1 + T C rs181344940 45363923 + 45363903 45363943 41 CTGGCCTCTCGAGTTCTCCTATCTTCTCCATTCTAGATGCT CTGGCCTCTCGAGTTCTCCCATCTTCTCCATTCTAGATGCT < 41bp 0.500887848773671 0.701452807278017 0.17983761 0.7883513 prediction 0.401129917008693 Functional Gain - SLC2A10 ENSG00000197496 UTR3 Human protein_coding chr20:45363923 chr20:45363922 . . 0 20 hm1A_associated_SNPs_24367 0 0 0 1 45363909 45363932 mRNA hsa-miR-185 SLC2A10 miRanda miRanda
2192 chr16 50744692 50744692 1 + C T UCEC 50744691 + 50744671 50744711 41 CACCCCTGGCCACCTCAATGACGATGCGGACACTGTGCTGG CACCCCTGGCCACCTCAATGATGATGCGGACACTGTGCTGG < 41bp 0.564652402661247 0.765181082036431 0.50870156 0.45502168 prediction 0.401057358750368 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50744691 chr16:50744692 synonymous SNV . 0 22 hm1A_associated_SNPs_24376 0 0 0 1 50744687 50744708 mRNA hsa-miR-128 NOD2 miRanda miRanda
2192 chr4 52945922 52945922 1 + G T UCEC 52945921 + 52945901 52945941 41 GTTTTTCAGGATGTGATCCGAGCCATGAATGTCAATCCCAA GTTTTTCAGGATGTGATCCGATCCATGAATGTCAATCCCAA < 41bp 0.525010312867822 0.72535862393789 0.11746767 0.1675806 prediction 0.400696622140136 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52945921 chr4:52945922 nonsynonymous SNV 0.998 3 22 hm1A_associated_SNPs_24428 0 0 1 4 52945912 52945933 mRNA hsa-miR-181a SPATA18 miRanda miRanda
2192 chr4 52945922 52945922 1 + G T UCEC 52945921 + 52945901 52945941 41 GTTTTTCAGGATGTGATCCGAGCCATGAATGTCAATCCCAA GTTTTTCAGGATGTGATCCGATCCATGAATGTCAATCCCAA < 41bp 0.525010312867822 0.72535862393789 0.11746767 0.1675806 prediction 0.400696622140136 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52945921 chr4:52945922 nonsynonymous SNV 0.998 3 22 hm1A_associated_SNPs_24428 0 0 1 4 52945913 52945933 mRNA hsa-miR-181b SPATA18 miRanda miRanda
2192 chr4 52945922 52945922 1 + G T UCEC 52945921 + 52945901 52945941 41 GTTTTTCAGGATGTGATCCGAGCCATGAATGTCAATCCCAA GTTTTTCAGGATGTGATCCGATCCATGAATGTCAATCCCAA < 41bp 0.525010312867822 0.72535862393789 0.11746767 0.1675806 prediction 0.400696622140136 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52945921 chr4:52945922 nonsynonymous SNV 0.998 3 22 hm1A_associated_SNPs_24428 0 0 1 4 52945913 52945933 mRNA hsa-miR-181c SPATA18 miRanda miRanda
2192 chr4 52945922 52945922 1 + G T UCEC 52945921 + 52945901 52945941 41 GTTTTTCAGGATGTGATCCGAGCCATGAATGTCAATCCCAA GTTTTTCAGGATGTGATCCGATCCATGAATGTCAATCCCAA < 41bp 0.525010312867822 0.72535862393789 0.11746767 0.1675806 prediction 0.400696622140136 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52945921 chr4:52945922 nonsynonymous SNV 0.998 3 22 hm1A_associated_SNPs_24428 0 0 1 4 52945913 52945933 mRNA hsa-miR-181d SPATA18 miRanda miRanda
2192 chr19 56696605 56696605 1 + A C UCEC 56696607 + 56696587 56696627 41 TGGGCATGCTCAGCATGAAAATTCCCAAGGAGGAAGATGTC TGGGCATGCTCAGCATGACAATTCCCAAGGAGGAAGATGTC < 41bp 0.405547233055818 0.700326333446177 0.042477727 0.04102871 prediction 0.400652666892355 Functional Gain - GALP ENSG00000197487 CDS Human protein_coding chr19:56696607 chr19:56696605 nonsynonymous SNV 0.001 0 19 hm1A_associated_SNPs_24434 0 0 0 1 56696590 56696610 mRNA hsa-miR-590-3p GALP miRanda miRanda
2192 chrX 129318354 129318354 1 + C T PRAD 129318353 + 129318333 129318373 41 TGCCGTGGTCTTCGTCTATGACGTCACCAAGATGACATCTT TGCCGTGGTCTTCGTCTATGATGTCACCAAGATGACATCTT < 41bp 0.584927128266047 0.78520647210641 0.46327394 0.34811693 prediction 0.400558687680726 Functional Gain - RAB33A ENSG00000134594 CDS Human protein_coding chrX:129318353 chrX:129318354 synonymous SNV . 0 22 hm1A_associated_SNPs_24447 0 0 0 2 129318335 129318354 mRNA hsa-miR-376a RAB33A miRanda miRanda
2192 chrX 129318354 129318354 1 + C T PRAD 129318353 + 129318333 129318373 41 TGCCGTGGTCTTCGTCTATGACGTCACCAAGATGACATCTT TGCCGTGGTCTTCGTCTATGATGTCACCAAGATGACATCTT < 41bp 0.584927128266047 0.78520647210641 0.46327394 0.34811693 prediction 0.400558687680726 Functional Gain - RAB33A ENSG00000134594 CDS Human protein_coding chrX:129318353 chrX:129318354 synonymous SNV . 0 22 hm1A_associated_SNPs_24447 0 0 0 2 129318334 129318354 mRNA hsa-miR-376b RAB33A miRanda miRanda
2192 chr16 30012763 30012763 1 + C A COAD 30012763 + 30012743 30012783 41 CTCCCGCTACCCCCCATTCCCTTCTGACTACCTGGCCCTGC CTCCCGCTACCCCCCATTCCATTCTGACTACCTGGCCCTGC Direct Gain 0 0.978133891402231 0 0.997247934341431 prediction 0.956267782804463 Functional Gain - INO80E ENSG00000169592 CDS Human protein_coding chr16:30012763 chr16:30012763 nonsynonymous SNV 1.000 4 21 hm1A_associated_SNPs_25086 0 0 1 2 30012755 30012776 mRNA hsa-miR-196a INO80E miRanda miRanda
2192 chr16 30012763 30012763 1 + C A COAD 30012763 + 30012743 30012783 41 CTCCCGCTACCCCCCATTCCCTTCTGACTACCTGGCCCTGC CTCCCGCTACCCCCCATTCCATTCTGACTACCTGGCCCTGC Direct Gain 0 0.978133891402231 0 0.997247934341431 prediction 0.956267782804463 Functional Gain - INO80E ENSG00000169592 CDS Human protein_coding chr16:30012763 chr16:30012763 nonsynonymous SNV 1.000 4 21 hm1A_associated_SNPs_25086 0 0 1 2 30012755 30012776 mRNA hsa-miR-196b INO80E miRanda miRanda
2192 chr22 18898420 18898420 1 + G A rs146390355 18898420 + 18898400 18898440 41 GGCGGTGGAGCACCGGATCCGTGAGGAGCAGCGGGCGATGG GGCGGTGGAGCACCGGATCCATGAGGAGCAGCGGGCGATGG Direct Gain 0 0.97393575829692 0 0.961179912090302 prediction 0.94787151659384 Functional Gain - DGCR6 ENSG00000183628 CDS Human protein_coding chr22:18898420 chr22:18898420 nonsynonymous SNV 0.839 0 21 hm1A_associated_SNPs_25575 0 0 0 1 18898403 18898421 mRNA hsa-miR-127-3p DGCR6 miRanda miRanda
2192 chr16 28847720 28847720 1 + G A COAD 28847720 + 28847700 28847740 41 TCTGTCCTTTGCTTCCCTCCGTCCTCGCTCAGTTGTGATCC TCTGTCCTTTGCTTCCCTCCATCCTCGCTCAGTTGTGATCC Direct Gain 0 0.971676511092952 0 0.993911921977997 prediction 0.943353022185903 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28847720 chr16:28847720 synonymous SNV . 0 21 hm1A_associated_SNPs_26012 0 0 1 1 28847703 28847724 mRNA hsa-miR-184 ATXN2L miRanda miRanda
2192 chr17 6348464 6348464 1 + G A COAD 6348464 + 6348444 6348484 41 GGCAGAACATGGGGACCTCCGTGCGCCGGAGATCTCTCCAG GGCAGAACATGGGGACCTCCATGCGCCGGAGATCTCTCCAG Direct Gain 0 0.966702414078205 0 0.763707637786865 prediction 0.93340482815641 Functional Gain - PIMREG ENSG00000129195 CDS Human protein_coding chr17:6348464 chr17:6348464 nonsynonymous SNV 0.008 0 21 hm1A_associated_SNPs_27108 0 0 0 1 6348462 6348483 mRNA hsa-miR-185 FAM64A miRanda miRanda
2192 chr17 35306443 35306443 1 + C A STAD 35306443 + 35306423 35306463 41 ACGATGGCGGGGCCGCAGCCCCTGGCGCTGCAACTGGAACA ACGATGGCGGGGCCGCAGCCACTGGCGCTGCAACTGGAACA Direct Gain 0 0.965764885942039 0 0.954867601394653 prediction 0.931529771884079 Functional Gain - AATF ENSG00000108270 CDS Human other chr17:35306443 chr17:35306443 synonymous SNV . 0 21 hm1A_associated_SNPs_27360 0 0 1 1 35306436 35306461 mRNA hsa-miR-145 AATF miRanda miRanda
2192 chr18 12311006 12311006 1 + G A UCEC 12311006 + 12310986 12311026 41 GGCACCATGGACAGCGTGCGGTCTGGGCCTTTTGGGCAGCT GGCACCATGGACAGCGTGCGATCTGGGCCTTTTGGGCAGCT Direct Gain 0 0.965589929360497 0 0.95064377784729 prediction 0.931179858720995 Functional Gain - TUBB6 ENSG00000176014 CDS Human protein_coding chr18:12311006 chr18:12311006 synonymous SNV . 0 21 hm1A_associated_SNPs_27404 0 0 1 4 12311006 12311029 mRNA hsa-miR-17 TUBB6 miRanda miRanda
2192 chr18 12311006 12311006 1 + G A UCEC 12311006 + 12310986 12311026 41 GGCACCATGGACAGCGTGCGGTCTGGGCCTTTTGGGCAGCT GGCACCATGGACAGCGTGCGATCTGGGCCTTTTGGGCAGCT Direct Gain 0 0.965589929360497 0 0.95064377784729 prediction 0.931179858720995 Functional Gain - TUBB6 ENSG00000176014 CDS Human protein_coding chr18:12311006 chr18:12311006 synonymous SNV . 0 21 hm1A_associated_SNPs_27404 0 0 1 4 12311006 12311029 mRNA hsa-miR-20a TUBB6 miRanda miRanda
2192 chr18 12311006 12311006 1 + G A UCEC 12311006 + 12310986 12311026 41 GGCACCATGGACAGCGTGCGGTCTGGGCCTTTTGGGCAGCT GGCACCATGGACAGCGTGCGATCTGGGCCTTTTGGGCAGCT Direct Gain 0 0.965589929360497 0 0.95064377784729 prediction 0.931179858720995 Functional Gain - TUBB6 ENSG00000176014 CDS Human protein_coding chr18:12311006 chr18:12311006 synonymous SNV . 0 21 hm1A_associated_SNPs_27404 0 0 1 4 12311006 12311029 mRNA hsa-miR-106a TUBB6 miRanda miRanda
2192 chr18 12311006 12311006 1 + G A UCEC 12311006 + 12310986 12311026 41 GGCACCATGGACAGCGTGCGGTCTGGGCCTTTTGGGCAGCT GGCACCATGGACAGCGTGCGATCTGGGCCTTTTGGGCAGCT Direct Gain 0 0.965589929360497 0 0.95064377784729 prediction 0.931179858720995 Functional Gain - TUBB6 ENSG00000176014 CDS Human protein_coding chr18:12311006 chr18:12311006 synonymous SNV . 0 21 hm1A_associated_SNPs_27404 0 0 1 4 12311006 12311029 mRNA hsa-miR-20b TUBB6 miRanda miRanda
2192 chr1 28975120 28975120 1 + C A rs145438715 28975120 + 28975100 28975140 41 GACAGAGAAAGCAAAAAGGGCTTCTGTCGTGAGTGGCACAC GACAGAGAAAGCAAAAAGGGATTCTGTCGTGAGTGGCACAC Direct Gain 0 0.964501853281852 0 0.491049408912659 prediction 0.929003706563704 Functional Gain - LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975120 chr1:28975120 . . 0 21 hm1A_associated_SNPs_27724 0 0 1 4 28975112 28975132 mRNA hsa-miR-377 RNU11 miRanda miRanda
2192 chr1 28975120 28975120 1 + C A rs145438715 28975120 + 28975100 28975140 41 GACAGAGAAAGCAAAAAGGGCTTCTGTCGTGAGTGGCACAC GACAGAGAAAGCAAAAAGGGATTCTGTCGTGAGTGGCACAC Direct Gain 0 0.964501853281852 0 0.491049408912659 prediction 0.929003706563704 Functional Gain - LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975120 chr1:28975120 . . 0 21 hm1A_associated_SNPs_27724 0 0 1 4 28975112 28975133 mRNA hsa-miR-342-3p RNU11 miRanda miRanda
2192 chr1 28975120 28975120 1 + C A rs145438715 28975120 + 28975100 28975140 41 GACAGAGAAAGCAAAAAGGGCTTCTGTCGTGAGTGGCACAC GACAGAGAAAGCAAAAAGGGATTCTGTCGTGAGTGGCACAC Direct Gain 0 0.964501853281852 0 0.491049408912659 prediction 0.929003706563704 Functional Gain - LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975120 chr1:28975120 . . 0 21 hm1A_associated_SNPs_27724 0 0 1 4 28975112 28975122 lncRNA hsa-miR-129-1-3p AL360012.1 miRanda starBase2
2192 chr1 28975120 28975120 1 + C A rs145438715 28975120 + 28975100 28975140 41 GACAGAGAAAGCAAAAAGGGCTTCTGTCGTGAGTGGCACAC GACAGAGAAAGCAAAAAGGGATTCTGTCGTGAGTGGCACAC Direct Gain 0 0.964501853281852 0 0.491049408912659 prediction 0.929003706563704 Functional Gain - LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975120 chr1:28975120 . . 0 21 hm1A_associated_SNPs_27724 0 0 1 4 28975112 28975122 lncRNA hsa-miR-129-2-3p AL360012.1 miRanda starBase2
2192 chr15 52497187 52497187 1 + G A STAD 52497187 + 52497167 52497207 41 ACAAGCTCGGGGTCCAGGCCGTTCTGGCACATGGTGGTGTA ACAAGCTCGGGGTCCAGGCCATTCTGGCACATGGTGGTGTA Direct Gain 0 0.964124222359223 0 0.940359830856323 prediction 0.928248444718445 Functional Gain - MYO5C ENSG00000128833 CDS Human protein_coding chr15:52497187 chr15:52497187 synonymous SNV . 0 21 hm1A_associated_SNPs_27826 0 0 0 1 52497180 52497199 mRNA hsa-miR-455-5p LOC100129973 miRanda miRanda
2192 chr1 25757646 25757646 1 + G A rs369738026 25757646 + 25757626 25757666 41 CGCCCCCTAAAGCGGAACCGGATCACCGAGGGCATTTACGG CGCCCCCTAAAGCGGAACCGAATCACCGAGGGCATTTACGG Direct Gain 0 0.96307015496637 0 0.930639982223511 prediction 0.92614030993274 Functional Gain - TMEM57 ENSG00000204178 CDS Human protein_coding chr1:25757646 chr1:25757646 synonymous SNV . 0 21 hm1A_associated_SNPs_28120 0 0 1 1 25757641 25757662 mRNA hsa-miR-365 TMEM57 miRanda miRanda
2192 chr21 37445098 37445098 1 + C A UCEC 37445098 + 37445078 37445118 41 AGAAGAAGGTGCAGAGACCCCTGTGTACTTGGCCCTTTTGC AGAAGAAGGTGCAGAGACCCATGTGTACTTGGCCCTTTTGC Direct Gain 0 0.961538969243713 0 0.998602867126465 prediction 0.923077938487426 Functional Gain - CBR1 ENSG00000159228 CDS Human protein_coding chr21:37445098 chr21:37445098 nonsynonymous SNV 0.991 4 21 hm1A_associated_SNPs_28626 0 0 1 1 37445088 37445108 mRNA hsa-miR-224 CBR1 miRanda miRanda
2192 chr1 38274779 38274779 1 + C A COAD 38274779 + 38274759 38274799 41 GAATACCCTGACTTCTCTCCCTCCCCAGGGCCGGTGGCTGG GAATACCCTGACTTCTCTCCATCCCCAGGGCCGGTGGCTGG Direct Gain 0 0.961236681970496 0 0.982346177101135 prediction 0.922473363940993 Functional Gain - C1orf122 ENSG00000197982 CDS Human protein_coding chr1:38274779 chr1:38274779 synonymous SNV . 0 21 hm1A_associated_SNPs_28710 0 0 1 1 38274755 38274779 mRNA hsa-miR-185 C1orf122 miRanda miRanda
2192 chr17 62223446 62223446 1 + G A rs370213406 62223446 + 62223426 62223466 41 CGTAGGGGGGCCGGCCTGCTGTGATGACATTCCAATTAAAG CGTAGGGGGGCCGGCCTGCTATGATGACATTCCAATTAAAG Direct Gain 0 0.960409714092861 0 0.416763693094254 prediction 0.920819428185722 Functional Gain - SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223446 chr17:62223446 . . 0 21 hm1A_associated_SNPs_29005 0 0 1 4 62223438 62223447 mRNA hsa-miR-214 SNORD104 miRanda miRanda
2192 chr17 62223446 62223446 1 + G A rs370213406 62223446 + 62223426 62223466 41 CGTAGGGGGGCCGGCCTGCTGTGATGACATTCCAATTAAAG CGTAGGGGGGCCGGCCTGCTATGATGACATTCCAATTAAAG Direct Gain 0 0.960409714092861 0 0.416763693094254 prediction 0.920819428185722 Functional Gain - SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223446 chr17:62223446 . . 0 21 hm1A_associated_SNPs_29005 0 0 1 4 62223438 62223459 mRNA hsa-miR-1 SNORD104 miRanda miRanda
2192 chr17 62223446 62223446 1 + G A rs370213406 62223446 + 62223426 62223466 41 CGTAGGGGGGCCGGCCTGCTGTGATGACATTCCAATTAAAG CGTAGGGGGGCCGGCCTGCTATGATGACATTCCAATTAAAG Direct Gain 0 0.960409714092861 0 0.416763693094254 prediction 0.920819428185722 Functional Gain - SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223446 chr17:62223446 . . 0 21 hm1A_associated_SNPs_29005 0 0 1 4 62223438 62223459 mRNA hsa-miR-206 SNORD104 miRanda miRanda
2192 chr17 62223446 62223446 1 + G A rs370213406 62223446 + 62223426 62223466 41 CGTAGGGGGGCCGGCCTGCTGTGATGACATTCCAATTAAAG CGTAGGGGGGCCGGCCTGCTATGATGACATTCCAATTAAAG Direct Gain 0 0.960409714092861 0 0.416763693094254 prediction 0.920819428185722 Functional Gain - SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223446 chr17:62223446 . . 0 21 hm1A_associated_SNPs_29005 0 0 1 4 62223440 62223459 mRNA hsa-miR-613 SNORD104 miRanda miRanda
2192 chr1 26503989 26503989 1 + G A rs199971673 26503989 + 26503969 26504009 41 GCTCTGGGAGCGGAAATTCCGGCGACAGCAGGGCAAAACAG GCTCTGGGAGCGGAAATTCCAGCGACAGCAGGGCAAAACAG Direct Gain 0 0.960163205350896 0 0.390259832143784 prediction 0.920326410701793 Functional Gain - CNKSR1 ENSG00000142675 UTR5 Human protein_coding chr1:26503989 chr1:26503989 . . 0 21 hm1A_associated_SNPs_29087 0 0 0 1 26503982 26504004 mRNA hsa-miR-874 CNKSR1 miRanda miRanda
2192 chr11 105948587 105948587 1 + G A LUSC 105948587 + 105948567 105948607 41 GAGAAGGAGCGCATTGGCCAGTTCGTCTTTGCCCGGGACGC GAGAAGGAGCGCATTGGCCAATTCGTCTTTGCCCGGGACGC Direct Gain 0 0.959737622144276 0 0.552424252033234 prediction 0.919475244288553 Functional Gain - AASDHPPT ENSG00000149313 CDS Human protein_coding chr11:105948587 chr11:105948587 synonymous SNV . 0 21 hm1A_associated_SNPs_29243 0 0 1 2 105948568 105948589 mRNA hsa-miR-193a-3p AASDHPPT miRanda miRanda
2192 chr11 105948587 105948587 1 + G A LUSC 105948587 + 105948567 105948607 41 GAGAAGGAGCGCATTGGCCAGTTCGTCTTTGCCCGGGACGC GAGAAGGAGCGCATTGGCCAATTCGTCTTTGCCCGGGACGC Direct Gain 0 0.959737622144276 0 0.552424252033234 prediction 0.919475244288553 Functional Gain - AASDHPPT ENSG00000149313 CDS Human protein_coding chr11:105948587 chr11:105948587 synonymous SNV . 0 21 hm1A_associated_SNPs_29243 0 0 1 2 105948568 105948589 mRNA hsa-miR-193b AASDHPPT miRanda miRanda
2192 chr19 9949152 9949152 1 + G A rs2233682 9949152 + 9949132 9949172 41 CACATCACTAACGCCAGCCAGTGGGAGCGGCCCAGCGGCAA CACATCACTAACGCCAGCCAATGGGAGCGGCCCAGCGGCAA Direct Gain 0 0.958620109421101 0 0.537647366523743 prediction 0.917240218842203 Functional Gain - PIN1 ENSG00000127445 CDS Human protein_coding chr19:9949152 chr19:9949152 synonymous SNV . 0 21 hm1A_associated_SNPs_29633 0 0 1 1 9949150 9949172 mRNA hsa-miR-874 PIN1 miRanda miRanda
2192 chr9 130472910 130472910 1 + G A COAD 130472910 + 130472890 130472930 41 GGCAGCCCTGGAGGAGTTCCGGCTGCAGAAAGAGGAGGTCA GGCAGCCCTGGAGGAGTTCCAGCTGCAGAAAGAGGAGGTCA Direct Gain 0 0.958407113021957 0 0.545696318149567 prediction 0.916814226043914 Functional Gain - CFAP157 ENSG00000160401 CDS Human protein_coding chr9:130472910 chr9:130472910 nonsynonymous SNV 1.000 1 21 hm1A_associated_SNPs_29700 0 0 0 1 130472899 130472920 mRNA hsa-miR-544 C9orf117 miRanda miRanda
2192 chr2 70122274 70122274 1 + G A UCEC 70122274 + 70122254 70122294 41 GGAGAGAGAACGCAGGCGCCGAGAAAGGTCCAGGTCTCGGG GGAGAGAGAACGCAGGCGCCAAGAAAGGTCCAGGTCTCGGG Direct Gain 0 0.956620988636647 0 0.908214032649994 prediction 0.913241977273294 Functional Gain - SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122274 chr2:70122274 nonsynonymous SNV 0.985 1 21 hm1A_associated_SNPs_30329 0 0 1 1 70122272 70122294 mRNA hsa-miR-615-3p SNRNP27 miRanda miRanda
2192 chr3 112709901 112709901 1 + G A LGG 112709901 + 112709881 112709921 41 GACTCTTTGAAATGCCTGCGGTGCTAGAGCGACTGAGCCGC GACTCTTTGAAATGCCTGCGATGCTAGAGCGACTGAGCCGC Direct Gain 0 0.953880072083264 0 0.894357323646545 prediction 0.907760144166528 Functional Gain - GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112709901 chr3:112709901 nonsynonymous SNV 0.000 0 21 hm1A_associated_SNPs_31437 0 0 1 1 112709899 112709920 mRNA hsa-miR-24 GTPBP8 miRanda miRanda
2192 chr9 132397658 132397658 1 + G A rs559597162 132397658 + 132397638 132397678 41 GGTCCGCAGGATCATCTGCAGTGCAGGCCTCAGCCTCCTGG GGTCCGCAGGATCATCTGCAATGCAGGCCTCAGCCTCCTGG Direct Gain 0 0.950576462067848 0 0.544504880905151 prediction 0.901152924135696 Functional Gain - NTMT1 ENSG00000148335 CDS Human protein_coding chr9:132397658 chr9:132397658 nonsynonymous SNV 0.114 1 21 hm1A_associated_SNPs_32853 0 0 1 1 132397651 132397675 mRNA hsa-miR-485-5p METTL11A miRanda miRanda
2192 chr18 8831675 8831675 1 + G A SARC 8831675 + 8831655 8831695 41 GCCCGAGAGACCAGCAAACCGTCGCCCTCCGTCCCGTTGGG GCCCGAGAGACCAGCAAACCATCGCCCTCCGTCCCGTTGGG Direct Gain 0 0.949022464556794 0 0.975042223930359 prediction 0.898044929113589 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8831675 chr18:8831675 nonsynonymous SNV 0.997 0 21 hm1A_associated_SNPs_33562 0 0 1 1 8831669 8831689 mRNA hsa-miR-184 KIAA0802 miRanda miRanda
2192 chr6 42985302 42985302 1 + G A ACC 42985302 + 42985282 42985322 41 CCCGGTGAAGTCTGCCATCCGTGGGCAAGCTCCTGTGGTAC CCCGGTGAAGTCTGCCATCCATGGGCAAGCTCCTGTGGTAC Direct Gain 0 0.948405159996704 0 0.971010684967041 prediction 0.896810319993409 Functional Gain - KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42985302 chr6:42985302 nonsynonymous SNV 0.990 0 21 hm1A_associated_SNPs_33855 0 0 1 2 42985295 42985316 mRNA hsa-miR-28-5p KLHDC3 miRanda miRanda
2192 chr6 42985302 42985302 1 + G A ACC 42985302 + 42985282 42985322 41 CCCGGTGAAGTCTGCCATCCGTGGGCAAGCTCCTGTGGTAC CCCGGTGAAGTCTGCCATCCATGGGCAAGCTCCTGTGGTAC Direct Gain 0 0.948405159996704 0 0.971010684967041 prediction 0.896810319993409 Functional Gain - KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42985302 chr6:42985302 nonsynonymous SNV 0.990 0 21 hm1A_associated_SNPs_33855 0 0 1 2 42985294 42985316 mRNA hsa-miR-708 KLHDC3 miRanda miRanda
2192 chr7 1579790 1579790 1 + G A rs574406742 1579790 + 1579770 1579810 41 AGGAGCTGGAGCGGCAGCGCGTGGAGCTGCAGCAGGAGGTG AGGAGCTGGAGCGGCAGCGCATGGAGCTGCAGCAGGAGGTG Direct Gain 0 0.947160000054535 0 0.871660828590393 prediction 0.89432000010907 Functional Gain - MAFK ENSG00000198517 CDS Human protein_coding chr7:1579790 chr7:1579790 nonsynonymous SNV 0.986 1 21 hm1A_associated_SNPs_34463 0 0 1 1 1579785 1579806 mRNA hsa-miR-370 MAFK miRanda miRanda