1 chr1 45242241 45242241 1 + C A rs377221663 45242241 + 45242221 45242261 41 GCCACTTGCCAATGCAAGGACTTGTCATAGTTACACTGACT GCCACTTGCCAATGCAAGGAATTGTCATAGTTACACTGACT Direct Loss 1 0.147538973514822 1 0.103784769773483 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242241 chr1:45242241 . . 0 21 hm5C_associated_SNPs_26 0 0 1 6 45242241 45242260 mRNA hsa-miR-199a-5p SNORD46 miRanda miRanda
2 chr1 45242241 45242241 1 + C A rs377221663 45242241 + 45242221 45242261 41 GCCACTTGCCAATGCAAGGACTTGTCATAGTTACACTGACT GCCACTTGCCAATGCAAGGAATTGTCATAGTTACACTGACT Direct Loss 1 0.147538973514822 1 0.103784769773483 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242241 chr1:45242241 . . 0 21 hm5C_associated_SNPs_26 0 0 1 6 45242234 45242260 mRNA hsa-miR-199b-5p SNORD46 miRanda miRanda
3 chr1 45242241 45242241 1 + C A rs377221663 45242241 + 45242221 45242261 41 GCCACTTGCCAATGCAAGGACTTGTCATAGTTACACTGACT GCCACTTGCCAATGCAAGGAATTGTCATAGTTACACTGACT Direct Loss 1 0.147538973514822 1 0.103784769773483 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242241 chr1:45242241 . . 0 21 hm5C_associated_SNPs_26 0 0 1 6 45242240 45242261 mRNA hsa-miR-223 SNORD46 miRanda miRanda
4 chr1 45242241 45242241 1 + C A rs377221663 45242241 + 45242221 45242261 41 GCCACTTGCCAATGCAAGGACTTGTCATAGTTACACTGACT GCCACTTGCCAATGCAAGGAATTGTCATAGTTACACTGACT Direct Loss 1 0.147538973514822 1 0.103784769773483 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242241 chr1:45242241 . . 0 21 hm5C_associated_SNPs_26 0 0 1 6 45242241 45242261 mRNA hsa-miR-34c-5p SNORD46 miRanda miRanda
5 chr1 45242241 45242241 1 + C A rs377221663 45242241 + 45242221 45242261 41 GCCACTTGCCAATGCAAGGACTTGTCATAGTTACACTGACT GCCACTTGCCAATGCAAGGAATTGTCATAGTTACACTGACT Direct Loss 1 0.147538973514822 1 0.103784769773483 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242241 chr1:45242241 . . 0 21 hm5C_associated_SNPs_26 0 0 1 6 45242239 45242261 mRNA hsa-miR-449a SNORD46 miRanda miRanda
6 chr1 45242241 45242241 1 + C A rs377221663 45242241 + 45242221 45242261 41 GCCACTTGCCAATGCAAGGACTTGTCATAGTTACACTGACT GCCACTTGCCAATGCAAGGAATTGTCATAGTTACACTGACT Direct Loss 1 0.147538973514822 1 0.103784769773483 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242241 chr1:45242241 . . 0 21 hm5C_associated_SNPs_26 0 0 1 6 45242239 45242261 mRNA hsa-miR-449b SNORD46 miRanda miRanda
7 chr1 146731563 146731563 1 + C T rs200538213 146731563 + 146731543 146731583 41 AGCTCCCTGCTGCATAAGACCTTGTCAGAGGTAAACTTACA AGCTCCCTGCTGCATAAGACTTTGTCAGAGGTAAACTTACA Direct Loss 1 0.215487365883824 1 0.0200057625770569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHD1L ENSG00000131778 CDS Human protein_coding chr1:146731563 chr1:146731563 synonymous SNV . 0 21 hm5C_associated_SNPs_39 0 0 1 2 146731557 146731572 mRNA hsa-miR-146a CHD1L miRanda miRanda
8 chr1 146731563 146731563 1 + C T rs200538213 146731563 + 146731543 146731583 41 AGCTCCCTGCTGCATAAGACCTTGTCAGAGGTAAACTTACA AGCTCCCTGCTGCATAAGACTTTGTCAGAGGTAAACTTACA Direct Loss 1 0.215487365883824 1 0.0200057625770569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHD1L ENSG00000131778 CDS Human protein_coding chr1:146731563 chr1:146731563 synonymous SNV . 0 21 hm5C_associated_SNPs_39 0 0 1 2 146731557 146731572 mRNA hsa-miR-146b-5p CHD1L miRanda miRanda
9 chr2 95848136 95848136 1 + C T rs150085215 95848136 + 95848116 95848156 41 TTGTCTGAGAACCTAGGCCCCAGGTATCACTGCACTTTAAG TTGTCTGAGAACCTAGGCCCTAGGTATCACTGCACTTTAAG Direct Loss 1 0.576357096791151 1 0.409206569194794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF2 ENSG00000163067 UTR3 Human other chr2:95848136 chr2:95848136 . . 0 21 hm5C_associated_SNPs_69 0 0 0 7 95848132 95848154 mRNA hsa-miR-17 ZNF2 miRanda miRanda
10 chr2 95848136 95848136 1 + C T rs150085215 95848136 + 95848116 95848156 41 TTGTCTGAGAACCTAGGCCCCAGGTATCACTGCACTTTAAG TTGTCTGAGAACCTAGGCCCTAGGTATCACTGCACTTTAAG Direct Loss 1 0.576357096791151 1 0.409206569194794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF2 ENSG00000163067 UTR3 Human other chr2:95848136 chr2:95848136 . . 0 21 hm5C_associated_SNPs_69 0 0 0 7 95848130 95848154 mRNA hsa-miR-20a ZNF2 miRanda miRanda
11 chr2 95848136 95848136 1 + C T rs150085215 95848136 + 95848116 95848156 41 TTGTCTGAGAACCTAGGCCCCAGGTATCACTGCACTTTAAG TTGTCTGAGAACCTAGGCCCTAGGTATCACTGCACTTTAAG Direct Loss 1 0.576357096791151 1 0.409206569194794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF2 ENSG00000163067 UTR3 Human other chr2:95848136 chr2:95848136 . . 0 21 hm5C_associated_SNPs_69 0 0 0 7 95848132 95848154 mRNA hsa-miR-93 ZNF2 miRanda miRanda
12 chr2 95848136 95848136 1 + C T rs150085215 95848136 + 95848116 95848156 41 TTGTCTGAGAACCTAGGCCCCAGGTATCACTGCACTTTAAG TTGTCTGAGAACCTAGGCCCTAGGTATCACTGCACTTTAAG Direct Loss 1 0.576357096791151 1 0.409206569194794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF2 ENSG00000163067 UTR3 Human other chr2:95848136 chr2:95848136 . . 0 21 hm5C_associated_SNPs_69 0 0 0 7 95848132 95848154 mRNA hsa-miR-106a ZNF2 miRanda miRanda
13 chr2 95848136 95848136 1 + C T rs150085215 95848136 + 95848116 95848156 41 TTGTCTGAGAACCTAGGCCCCAGGTATCACTGCACTTTAAG TTGTCTGAGAACCTAGGCCCTAGGTATCACTGCACTTTAAG Direct Loss 1 0.576357096791151 1 0.409206569194794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF2 ENSG00000163067 UTR3 Human other chr2:95848136 chr2:95848136 . . 0 21 hm5C_associated_SNPs_69 0 0 0 7 95848132 95848154 mRNA hsa-miR-106b ZNF2 miRanda miRanda
14 chr2 95848136 95848136 1 + C T rs150085215 95848136 + 95848116 95848156 41 TTGTCTGAGAACCTAGGCCCCAGGTATCACTGCACTTTAAG TTGTCTGAGAACCTAGGCCCTAGGTATCACTGCACTTTAAG Direct Loss 1 0.576357096791151 1 0.409206569194794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF2 ENSG00000163067 UTR3 Human other chr2:95848136 chr2:95848136 . . 0 21 hm5C_associated_SNPs_69 0 0 0 7 95848130 95848154 mRNA hsa-miR-20b ZNF2 miRanda miRanda
15 chr2 95848136 95848136 1 + C T rs150085215 95848136 + 95848116 95848156 41 TTGTCTGAGAACCTAGGCCCCAGGTATCACTGCACTTTAAG TTGTCTGAGAACCTAGGCCCTAGGTATCACTGCACTTTAAG Direct Loss 1 0.576357096791151 1 0.409206569194794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF2 ENSG00000163067 UTR3 Human other chr2:95848136 chr2:95848136 . . 0 21 hm5C_associated_SNPs_69 0 0 0 7 95848133 95848154 mRNA hsa-miR-519d ZNF2 miRanda miRanda
16 chr2 131906250 131906250 1 + C G rs16856546 131906250 + 131906230 131906270 41 CCACGGGTCTGCTTTTCTCTCTGATCCTAGGGGACTTGTTG CCACGGGTCTGCTTTTCTCTGTGATCCTAGGGGACTTGTTG Direct Loss 1 0.435268385837108 1 0.0619962513446808 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHB2 ENSG00000115762 UTR3 Human protein_coding chr2:131906250 chr2:131906250 . . 0 21 hm5C_associated_SNPs_74 0 0 1 1 131906250 131906273 mRNA hsa-miR-505 PLEKHB2 miRanda miRanda
17 chr3 10143189 10143189 1 + C T rs552573592 10143189 + 10143169 10143209 41 AAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACGA AAGCGATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGACGA Direct Loss 1 0.067837150540974 1 0.191718459129333 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FANCD2 ENSG00000144554 UTR3 Human protein_coding chr3:10143189 chr3:10143189 . . 0 21 hm5C_associated_SNPs_88 0 0 1 1 10143172 10143193 mRNA hsa-miR-485-5p FANCD2 miRanda miRanda
18 chr3 14487265 14487265 1 + C T rs2228585 14487265 + 14487245 14487285 41 TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT TTTATTTTCCTGTTTGGGAGTGGCCTGCCTGTGTTTTTCTT Direct Loss 1 0.229866455497195 1 0.367685973644257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487265 chr3:14487265 synonymous SNV . 0 21 hm5C_associated_SNPs_92 0 0 1 1 14487244 14487265 mRNA hsa-miR-150 SLC6A6 miRanda miRanda
19 chr5 148730879 148730879 1 + C T rs200331421 148730879 + 148730859 148730899 41 AACTGGATGTTCTCCCAGAGCGCAGTCACCTATGTTTCTTT AACTGGATGTTCTCCCAGAGTGCAGTCACCTATGTTTCTTT Direct Loss 1 0.597189329981257 1 0.117808848619461 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GRPEL2-AS1 ENSG00000253618 ncRNA_intronic Human antisense chr5:148730879 chr5:148730879 . . 0 21 hm5C_associated_SNPs_127 0 0 1 3 148730859 148730879 mRNA hsa-miR-330-5p GRPEL2 miRanda miRanda
20 chr5 148730879 148730879 1 + C T rs200331421 148730879 + 148730859 148730899 41 AACTGGATGTTCTCCCAGAGCGCAGTCACCTATGTTTCTTT AACTGGATGTTCTCCCAGAGTGCAGTCACCTATGTTTCTTT Direct Loss 1 0.597189329981257 1 0.117808848619461 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GRPEL2-AS1 ENSG00000253618 ncRNA_intronic Human antisense chr5:148730879 chr5:148730879 . . 0 21 hm5C_associated_SNPs_127 0 0 1 3 148730860 148730879 mRNA hsa-miR-326 GRPEL2 miRanda miRanda
21 chr5 148730879 148730879 1 + C T rs200331421 148730879 + 148730859 148730899 41 AACTGGATGTTCTCCCAGAGCGCAGTCACCTATGTTTCTTT AACTGGATGTTCTCCCAGAGTGCAGTCACCTATGTTTCTTT Direct Loss 1 0.597189329981257 1 0.117808848619461 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GRPEL2-AS1 ENSG00000253618 ncRNA_intronic Human antisense chr5:148730879 chr5:148730879 . . 0 21 hm5C_associated_SNPs_127 0 0 1 3 148730876 148730897 mRNA hsa-miR-494 GRPEL2 miRanda miRanda
22 chr6 41755410 41755410 1 + C G rs9471653 41755410 + 41755390 41755430 41 ACGCCGATACGGTTCCTCCACCGAGGCCCATGCGAAGCTTT ACGCCGATACGGTTCCTCCAGCGAGGCCCATGCGAAGCTTT Direct Loss 1 0.368289623319464 1 0.575979292392731 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOMM6 ENSG00000214736;ENSG00000124593 UTR5;UTR3 Human other chr6:41755410 chr6:41755410 . . 0 21 hm5C_associated_SNPs_208 0 0 1 1 41755388 41755411 mRNA hsa-miR-491-5p PRICKLE4 miRanda miRanda
23 chr6 88376924 88376924 1 + C A rs2307380 88376924 + 88376904 88376944 41 ATTTACATATATTAGAGGAGCCTGTTTTGTTGAGAAGATAA ATTTACATATATTAGAGGAGACTGTTTTGTTGAGAAGATAA Direct Loss 1 0.150434439495873 1 0.0721360743045807 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ORC3 ENSG00000135336 UTR3 Human protein_coding chr6:88376924 chr6:88376924 . . 0 21 hm5C_associated_SNPs_214 0 0 1 1 88376913 88376935 mRNA hsa-miR-495 ORC3L miRanda miRanda
24 chr7 56147214 56147214 1 + C A rs143972395 56147214 + 56147194 56147234 41 GTCCTCTCTCCCCTTCTCTGCTGGCAGGATGGGCAACACTC GTCCTCTCTCCCCTTCTCTGATGGCAGGATGGGCAACACTC Direct Loss 1 0.208081214230244 1 0.245250314474106 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SUMF2 ENSG00000129103 UTR3 Human protein_coding chr7:56147214 chr7:56147214 . . 0 21 hm5C_associated_SNPs_235 0 0 1 1 56147214 56147236 mRNA hsa-miR-122 SUMF2 miRanda miRanda
25 chr7 100861475 100861475 1 + C T rs10215517 100861475 + 100861455 100861495 41 TTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACTT TTCCGACAGTTGTGTTGTGCTAATGGTGGAGAAGAAAACTT Direct Loss 1 0.444544754872885 1 0.273062229156494 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861475 chr7:100861475 . . 0 21 hm5C_associated_SNPs_244 0 0 1 4 100861456 100861479 mRNA hsa-miR-32 ZNHIT1 miRanda miRanda
26 chr7 100861475 100861475 1 + C T rs10215517 100861475 + 100861455 100861495 41 TTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACTT TTCCGACAGTTGTGTTGTGCTAATGGTGGAGAAGAAAACTT Direct Loss 1 0.444544754872885 1 0.273062229156494 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861475 chr7:100861475 . . 0 21 hm5C_associated_SNPs_244 0 0 1 4 100861457 100861478 mRNA hsa-miR-96 ZNHIT1 miRanda miRanda
27 chr7 100861475 100861475 1 + C T rs10215517 100861475 + 100861455 100861495 41 TTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACTT TTCCGACAGTTGTGTTGTGCTAATGGTGGAGAAGAAAACTT Direct Loss 1 0.444544754872885 1 0.273062229156494 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861475 chr7:100861475 . . 0 21 hm5C_associated_SNPs_244 0 0 1 4 100861459 100861479 mRNA hsa-miR-363 ZNHIT1 miRanda miRanda
28 chr7 100861475 100861475 1 + C T rs10215517 100861475 + 100861455 100861495 41 TTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACTT TTCCGACAGTTGTGTTGTGCTAATGGTGGAGAAGAAAACTT Direct Loss 1 0.444544754872885 1 0.273062229156494 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861475 chr7:100861475 . . 0 21 hm5C_associated_SNPs_244 0 0 1 4 100861457 100861478 mRNA hsa-miR-1271 ZNHIT1 miRanda miRanda
29 chr7 130145329 130145329 1 + C T rs190221868 130145329 + 130145309 130145349 41 GGGGGCTCCTTCCCTCTCCTCGAATGACGTTATGGGCACAT GGGGGCTCCTTCCCTCTCCTTGAATGACGTTATGGGCACAT Direct Loss 1 0.362454933326919 1 0.124498158693314 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEST ENSG00000106484 UTR3 Human protein_coding chr7:130145329 chr7:130145329 . . 0 21 hm5C_associated_SNPs_249 0 0 0 2 130145329 130145353 mRNA hsa-miR-34a MEST miRanda miRanda
30 chr7 130145329 130145329 1 + C T rs190221868 130145329 + 130145309 130145349 41 GGGGGCTCCTTCCCTCTCCTCGAATGACGTTATGGGCACAT GGGGGCTCCTTCCCTCTCCTTGAATGACGTTATGGGCACAT Direct Loss 1 0.362454933326919 1 0.124498158693314 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEST ENSG00000106484 UTR3 Human protein_coding chr7:130145329 chr7:130145329 . . 0 21 hm5C_associated_SNPs_249 0 0 0 2 130145329 130145353 mRNA hsa-miR-34c-5p MEST miRanda miRanda
31 chr9 100128003 100128003 1 + C G rs148165882 100128003 + 100127983 100128023 41 CTCTGGGAGAGCAGTGAGAACCTGCTGACAGTCGCAGAGGT CTCTGGGAGAGCAGTGAGAAGCTGCTGACAGTCGCAGAGGT Direct Loss 1 0.167781011663424 1 0.507369160652161 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100128003 chr9:100128003 nonsynonymous SNV 0.074 0 21 hm5C_associated_SNPs_275 0 0 0 1 100127989 100128010 mRNA hsa-miR-214 KIAA1529 miRanda miRanda
32 chr10 17275861 17275861 1 + C T rs4903 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCACGGCTGCCCTGCGTGATGTACGTCAGCAATATGAAAG Direct Loss 1 0.117695486304056 1 0.041649341583252 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275861 synonymous SNV . 0 21 hm5C_associated_SNPs_295 0 0 1 1 17275853 17275876 mRNA hsa-miR-137 VIM miRanda miRanda
33 chr10 75531699 75531699 1 + C T rs114029318 75531699 + 75531679 75531719 41 AGCTGGAGCGCCGTTCTCTCCTGCTGGGACACCGCTTGGGC AGCTGGAGCGCCGTTCTCTCTTGCTGGGACACCGCTTGGGC Direct Loss 1 0.763657935466955 1 0.505581974983215 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC24C ENSG00000176986 UTR3 Human protein_coding chr10:75531699 chr10:75531699 . . 0 21 hm5C_associated_SNPs_297 0 0 1 1 75531685 75531705 mRNA hsa-miR-214 SEC24C miRanda miRanda
34 chr10 127452092 127452092 1 + C T rs140023483 127452092 + 127452072 127452112 41 CAGTGCCTTCAACACGGAGCCGGTTTGTTCATTCGGTGCTT CAGTGCCTTCAACACGGAGCTGGTTTGTTCATTCGGTGCTT Direct Loss 1 0.357020004254433 1 0.358961492776871 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EDRF1 ENSG00000107938 UTR3 Human protein_coding chr10:127452092 chr10:127452092 . . 0 21 hm5C_associated_SNPs_308 0 0 0 1 127452081 127452101 mRNA hsa-miR-495 C10orf137 miRanda miRanda
35 chr11 35828455 35828455 1 + C T rs182988466 35828455 + 35828435 35828475 41 ATTTGTGAAAATTGTGGTGCCATGAATTAAGATGGATGACT ATTTGTGAAAATTGTGGTGCTATGAATTAAGATGGATGACT Direct Loss 1 0.47425994206499 1 0.358970552682877 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM44 ENSG00000166326 UTR3 Human protein_coding chr11:35828455 chr11:35828455 . . 0 21 hm5C_associated_SNPs_319 0 0 1 1 35828438 35828458 mRNA hsa-miR-183 TRIM44 miRanda miRanda
36 chr11 65190887 65190887 1 + C A rs79376422 65190887 + 65190867 65190907 41 CGCTCGGCCTGGGACGGGGCCCAGGCCGGGCCCAGCCTGGT CGCTCGGCCTGGGACGGGGCACAGGCCGGGCCCAGCCTGGT Direct Loss 1 0.30013815866273 1 0.403544574975967 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190887 chr11:65190887 . . 0 21 hm5C_associated_SNPs_329 0 0 1 1 65190869 65190889 lncRNA hsa-miR-296-5p NEAT1 miRanda starBase2
37 chr12 56664231 56664231 1 + C T rs77131854 56664231 + 56664211 56664251 41 CTGTTTCTCCTCTCAATTTCCCAGAAATTGGGTTCTATGCT CTGTTTCTCCTCTCAATTTCTCAGAAATTGGGTTCTATGCT Direct Loss 1 0.396918317889335 1 0.695840775966644 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COQ10A ENSG00000135469 UTR3 Human protein_coding chr12:56664231 chr12:56664231 . . 0 21 hm5C_associated_SNPs_357 0 0 1 1 56664230 56664254 mRNA hsa-miR-338-3p COQ10A miRanda miRanda
38 chr12 101780269 101780269 1 + C T rs3199856 101780269 + 101780249 101780289 41 CTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCCTGCTC CTCCCAAAGTGCTGGGATTATAGGTGTGAGCCACCCTGCTC Direct Loss 1 0.924131807351843 1 0.810702681541443 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 UTR3 Human protein_coding chr12:101780269 chr12:101780269 . . 0 21 hm5C_associated_SNPs_362 0 0 0 2 101780251 101780276 mRNA hsa-miR-10a UTP20 miRanda miRanda
39 chr12 101780269 101780269 1 + C T rs3199856 101780269 + 101780249 101780289 41 CTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCCTGCTC CTCCCAAAGTGCTGGGATTATAGGTGTGAGCCACCCTGCTC Direct Loss 1 0.924131807351843 1 0.810702681541443 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 UTR3 Human protein_coding chr12:101780269 chr12:101780269 . . 0 21 hm5C_associated_SNPs_362 0 0 0 2 101780251 101780276 mRNA hsa-miR-10b UTP20 miRanda miRanda
40 chr16 53524831 53524831 1 + C T rs28670961 53524831 + 53524811 53524851 41 GTGTGCAATGTCTGAGTGAACCTGTATAAGTGGAGGCACTT GTGTGCAATGTCTGAGTGAATCTGTATAAGTGGAGGCACTT Direct Loss 1 0.234463070270198 1 0.0945850908756256 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBL2 ENSG00000103479 UTR3 Human protein_coding chr16:53524831 chr16:53524831 . . 0 21 hm5C_associated_SNPs_437 0 0 1 6 53524828 53524853 mRNA hsa-miR-17 RBL2 miRanda miRanda
41 chr16 53524831 53524831 1 + C T rs28670961 53524831 + 53524811 53524851 41 GTGTGCAATGTCTGAGTGAACCTGTATAAGTGGAGGCACTT GTGTGCAATGTCTGAGTGAATCTGTATAAGTGGAGGCACTT Direct Loss 1 0.234463070270198 1 0.0945850908756256 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBL2 ENSG00000103479 UTR3 Human protein_coding chr16:53524831 chr16:53524831 . . 0 21 hm5C_associated_SNPs_437 0 0 1 6 53524828 53524853 mRNA hsa-miR-20a RBL2 miRanda miRanda
42 chr16 53524831 53524831 1 + C T rs28670961 53524831 + 53524811 53524851 41 GTGTGCAATGTCTGAGTGAACCTGTATAAGTGGAGGCACTT GTGTGCAATGTCTGAGTGAATCTGTATAAGTGGAGGCACTT Direct Loss 1 0.234463070270198 1 0.0945850908756256 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBL2 ENSG00000103479 UTR3 Human protein_coding chr16:53524831 chr16:53524831 . . 0 21 hm5C_associated_SNPs_437 0 0 1 6 53524828 53524853 mRNA hsa-miR-93 RBL2 miRanda miRanda
43 chr16 53524831 53524831 1 + C T rs28670961 53524831 + 53524811 53524851 41 GTGTGCAATGTCTGAGTGAACCTGTATAAGTGGAGGCACTT GTGTGCAATGTCTGAGTGAATCTGTATAAGTGGAGGCACTT Direct Loss 1 0.234463070270198 1 0.0945850908756256 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBL2 ENSG00000103479 UTR3 Human protein_coding chr16:53524831 chr16:53524831 . . 0 21 hm5C_associated_SNPs_437 0 0 1 6 53524828 53524853 mRNA hsa-miR-106a RBL2 miRanda miRanda
44 chr16 53524831 53524831 1 + C T rs28670961 53524831 + 53524811 53524851 41 GTGTGCAATGTCTGAGTGAACCTGTATAAGTGGAGGCACTT GTGTGCAATGTCTGAGTGAATCTGTATAAGTGGAGGCACTT Direct Loss 1 0.234463070270198 1 0.0945850908756256 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBL2 ENSG00000103479 UTR3 Human protein_coding chr16:53524831 chr16:53524831 . . 0 21 hm5C_associated_SNPs_437 0 0 1 6 53524830 53524853 mRNA hsa-miR-106b RBL2 miRanda miRanda
45 chr16 53524831 53524831 1 + C T rs28670961 53524831 + 53524811 53524851 41 GTGTGCAATGTCTGAGTGAACCTGTATAAGTGGAGGCACTT GTGTGCAATGTCTGAGTGAATCTGTATAAGTGGAGGCACTT Direct Loss 1 0.234463070270198 1 0.0945850908756256 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBL2 ENSG00000103479 UTR3 Human protein_coding chr16:53524831 chr16:53524831 . . 0 21 hm5C_associated_SNPs_437 0 0 1 6 53524828 53524853 mRNA hsa-miR-20b RBL2 miRanda miRanda
46 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079226 81079250 mRNA hsa-miR-17 ATMIN miRanda miRanda
47 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079226 81079250 mRNA hsa-miR-20a ATMIN miRanda miRanda
48 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079226 81079250 mRNA hsa-miR-93 ATMIN miRanda miRanda
49 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079226 81079250 mRNA hsa-miR-106a ATMIN miRanda miRanda
50 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079229 81079250 mRNA hsa-miR-106b ATMIN miRanda miRanda
51 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079222 81079249 mRNA hsa-miR-302a ATMIN miRanda miRanda
52 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079227 81079249 mRNA hsa-miR-302b ATMIN miRanda miRanda
53 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079226 81079249 mRNA hsa-miR-302c ATMIN miRanda miRanda
54 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079226 81079249 mRNA hsa-miR-302d ATMIN miRanda miRanda
55 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079228 81079249 mRNA hsa-miR-372 ATMIN miRanda miRanda
56 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079225 81079249 mRNA hsa-miR-373 ATMIN miRanda miRanda
57 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079222 81079250 mRNA hsa-miR-20b ATMIN miRanda miRanda
58 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079228 81079249 mRNA hsa-miR-520e ATMIN miRanda miRanda
59 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079227 81079249 mRNA hsa-miR-520a-3p ATMIN miRanda miRanda
60 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079228 81079249 mRNA hsa-miR-520b ATMIN miRanda miRanda
61 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079227 81079249 mRNA hsa-miR-520c-3p ATMIN miRanda miRanda
62 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079228 81079250 mRNA hsa-miR-519d ATMIN miRanda miRanda
63 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079226 81079249 mRNA hsa-miR-520d-3p ATMIN miRanda miRanda
64 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0.744466670922584 1 0.170070767402649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 81079232 81079249 mRNA hsa-miR-302e ATMIN miRanda miRanda
65 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052505 34052527 mRNA hsa-miR-17 AP2B1 miRanda miRanda
66 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052504 34052527 mRNA hsa-miR-20a AP2B1 miRanda miRanda
67 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052504 34052527 mRNA hsa-miR-93 AP2B1 miRanda miRanda
68 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052505 34052527 mRNA hsa-miR-106a AP2B1 miRanda miRanda
69 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052507 34052527 mRNA hsa-miR-106b AP2B1 miRanda miRanda
70 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052504 34052526 mRNA hsa-miR-302a AP2B1 miRanda miRanda
71 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052504 34052526 mRNA hsa-miR-302b AP2B1 miRanda miRanda
72 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052504 34052526 mRNA hsa-miR-302c AP2B1 miRanda miRanda
73 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052507 34052526 mRNA hsa-miR-302d AP2B1 miRanda miRanda
74 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052504 34052526 mRNA hsa-miR-372 AP2B1 miRanda miRanda
75 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052508 34052526 mRNA hsa-miR-373 AP2B1 miRanda miRanda
76 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052507 34052527 mRNA hsa-miR-20b AP2B1 miRanda miRanda
77 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052506 34052526 mRNA hsa-miR-520e AP2B1 miRanda miRanda
78 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052507 34052526 mRNA hsa-miR-520a-3p AP2B1 miRanda miRanda
79 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052506 34052526 mRNA hsa-miR-520b AP2B1 miRanda miRanda
80 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052505 34052526 mRNA hsa-miR-520c-3p AP2B1 miRanda miRanda
81 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052506 34052527 mRNA hsa-miR-519d AP2B1 miRanda miRanda
82 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0.349604329145079 1 0.308046579360962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 34052506 34052526 mRNA hsa-miR-520d-3p AP2B1 miRanda miRanda
83 chr18 77730660 77730660 1 + C T rs116832047 77730660 + 77730640 77730680 41 AGAAATCACACGGACCAGCACCTTGATCTGGGACTTCCAGA AGAAATCACACGGACCAGCATCTTGATCTGGGACTTCCAGA Direct Loss 1 0.198388575893005 1 0.0276939272880554 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSBP1L1 ENSG00000226742 UTR3 Human protein_coding chr18:77730660 chr18:77730660 . . 0 21 hm5C_associated_SNPs_491 0 0 1 2 77730642 77730664 mRNA hsa-miR-18a HSBP1L1 miRanda miRanda
84 chr18 77730660 77730660 1 + C T rs116832047 77730660 + 77730640 77730680 41 AGAAATCACACGGACCAGCACCTTGATCTGGGACTTCCAGA AGAAATCACACGGACCAGCATCTTGATCTGGGACTTCCAGA Direct Loss 1 0.198388575893005 1 0.0276939272880554 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSBP1L1 ENSG00000226742 UTR3 Human protein_coding chr18:77730660 chr18:77730660 . . 0 21 hm5C_associated_SNPs_491 0 0 1 2 77730641 77730664 mRNA hsa-miR-18b HSBP1L1 miRanda miRanda
85 chr19 3578644 3578644 1 + C G rs145971836 3578644 + 3578624 3578664 41 CATCCTGCACCTTGGGGGCTCCAGCCCCCCTAAAATTAAAT CATCCTGCACCTTGGGGGCTGCAGCCCCCCTAAAATTAAAT Direct Loss 1 0.0927459738085127 1 0.386155366897583 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HMG20B ENSG00000064961 UTR3 Human protein_coding chr19:3578644 chr19:3578644 . . 0 21 hm5C_associated_SNPs_501 0 0 0 1 3578641 3578661 mRNA hsa-miR-590-3p HMG20B miRanda miRanda
86 chr19 49993254 49993254 1 + C G rs141468307 49993254 + 49993234 49993274 41 GAGCAACATTCACCATCTTTCGTTTGAGTCTCACGGCCATG GAGCAACATTCACCATCTTTGGTTTGAGTCTCACGGCCATG Direct Loss 1 0.106571808354034 1 0.0962155163288116 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993254 chr19:49993254 . . 0 21 hm5C_associated_SNPs_541 0 0 1 1 49993243 49993262 mRNA hsa-miR-371-5p SNORD32A miRanda miRanda
87 chr20 47895559 47895559 1 + C T rs140365533 47895559 + 47895539 47895579 41 TTTGCCAGTTAGTTCTGATACATCGGCCTCAAAAGGCCCGG TTTGCCAGTTAGTTCTGATATATCGGCCTCAAAAGGCCCGG Direct Loss 1 0.507605763573959 1 0.0785832107067108 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895559 chr20:47895559 . . 0 21 hm5C_associated_SNPs_558 0 0 1 2 47895538 47895559 mRNA hsa-miR-361-5p SNORD12C miRanda miRanda
88 chr20 47895559 47895559 1 + C T rs140365533 47895559 + 47895539 47895579 41 TTTGCCAGTTAGTTCTGATACATCGGCCTCAAAAGGCCCGG TTTGCCAGTTAGTTCTGATATATCGGCCTCAAAAGGCCCGG Direct Loss 1 0.507605763573959 1 0.0785832107067108 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895559 chr20:47895559 . . 0 21 hm5C_associated_SNPs_558 0 0 1 2 47895539 47895559 mRNA hsa-miR-383 SNORD12C miRanda miRanda
89 chrX 47431033 47431033 1 + C T rs112568375 47431033 + 47431013 47431053 41 TTCTGGAATTGGGGGACCCCCGCCAAAGACTGAGCCCCCTG TTCTGGAATTGGGGGACCCCTGCCAAAGACTGAGCCCCCTG Direct Loss 1 0.95075248520677 1 0.907622098922729 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARAF ENSG00000078061 UTR3 Human protein_coding chrX:47431033 chrX:47431033 . . 0 21 hm5C_associated_SNPs_590 0 0 1 1 47431026 47431049 mRNA hsa-miR-24 ARAF miRanda miRanda
90 chrX 73045745 73045745 1 - G A rs41303699 73045745 - 73045725 73045765 41 GAGAACCTGGGACTGTTGAGCATGTTTAATACTTTCCTTGA GAGAACCTGGGACTGTTGAGTATGTTTAATACTTTCCTTGA Direct Loss 1 0.149718632857912 1 0.524456679821014 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045745 chrX:73045745 . . 0 21 hm5C_associated_SNPs_594 0 0 1 1 73045724 73045748 lncRNA hsa-miR-561-5p XIST miRanda starBase2
91 chrX 73047076 73047076 1 - G A rs187945496 73047076 - 73047056 73047096 41 CCTGCCTGATAGGTGCAGAACGTCGGCTATCAGAGCAAGCA CCTGCCTGATAGGTGCAGAATGTCGGCTATCAGAGCAAGCA Direct Loss 1 0.283043605713903 1 0.153151333332062 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047076 chrX:73047076 . . 0 21 hm5C_associated_SNPs_595 0 0 1 2 73047059 73047080 lncRNA hsa-miR-5691 XIST miRanda starBase2
92 chrX 73047076 73047076 1 - G A rs187945496 73047076 - 73047056 73047096 41 CCTGCCTGATAGGTGCAGAACGTCGGCTATCAGAGCAAGCA CCTGCCTGATAGGTGCAGAATGTCGGCTATCAGAGCAAGCA Direct Loss 1 0.283043605713903 1 0.153151333332062 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047076 chrX:73047076 . . 0 21 hm5C_associated_SNPs_595 0 0 1 2 73047059 73047081 lncRNA hsa-miR-6805-3p XIST miRanda starBase2
93 chr10 101515429 101515429 1 + C G BLCA 101515429 + 101515409 101515449 41 ACTTTCTTGCTCAGAATATTCCCTAAAGGTAACAGATGTGA ACTTTCTTGCTCAGAATATTGCCTAAAGGTAACAGATGTGA Direct Loss 1 0.430445441462326 1 0.202685803174973 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUTC ENSG00000119929 CDS Human protein_coding chr10:101515429 chr10:101515429 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_652 0 0 1 1 101515423 101515450 mRNA hsa-miR-23b CUTC miRanda miRanda
94 chr12 6619500 6619500 1 + C T BRCA 6619500 + 6619480 6619520 41 GATACAGAGTTATGTGTGTTCACTGTAAGGGCAGACCAACA GATACAGAGTTATGTGTGTTTACTGTAAGGGCAGACCAACA Direct Loss 1 0.313392979001315 1 0.105707168579102 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619500 chr12:6619500 . . 0 21 hm5C_associated_SNPs_713 0 0 1 1 6619494 6619516 mRNA hsa-miR-346 SCARNA10 miRanda miRanda
95 chrX 73044044 73044044 1 - G A CESC 73044044 - 73044024 73044064 41 GTTATCTATTGTGTGCCAATCTCATTGCTAGGCATTGGGGA GTTATCTATTGTGTGCCAATTTCATTGCTAGGCATTGGGGA Direct Loss 1 0.11217162779593 1 0.121601104736328 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044044 chrX:73044044 . . 0 21 hm5C_associated_SNPs_723 0 0 1 1 73044034 73044054 lncRNA hsa-miR-4766-3p XIST miRanda starBase2
96 chr7 22896271 22896271 1 + C T CESC 22896271 + 22896251 22896291 41 TAATCTGATTTTATGTGCTTCTGCTGTGATGGATTAAAGGA TAATCTGATTTTATGTGCTTTTGCTGTGATGGATTAAAGGA Direct Loss 1 0.432829285686537 1 0.115805417299271 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD93 ENSG00000221740 ncRNA_exonic Human snoRNA chr7:22896271 chr7:22896271 . . 0 21 hm5C_associated_SNPs_725 0 0 1 1 22896258 22896280 mRNA hsa-miR-377 SNORD93 miRanda miRanda
97 chrX 73043746 73043746 1 - G A CESC 73043746 - 73043726 73043766 41 TGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGGAT TGATTACTTTCTGTGGGGCTTGGAACTACATGCCCTAGGAT Direct Loss 1 0.29828242855571 1 0.56615936756134 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043746 chrX:73043746 . . 0 21 hm5C_associated_SNPs_726 0 0 1 2 73043730 73043750 lncRNA hsa-miR-4761-3p XIST miRanda starBase2
98 chrX 73043746 73043746 1 - G A CESC 73043746 - 73043726 73043766 41 TGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGGAT TGATTACTTTCTGTGGGGCTTGGAACTACATGCCCTAGGAT Direct Loss 1 0.29828242855571 1 0.56615936756134 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043746 chrX:73043746 . . 0 21 hm5C_associated_SNPs_726 0 0 1 2 73043743 73043764 lncRNA hsa-miR-615-3p XIST miRanda starBase2
99 chr19 50027862 50027862 1 + C T CESC 50027862 + 50027842 50027882 41 ACCCTCCGGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTG ACCCTCCGGAGCTGCAACTTTGGTTCCTGCGGAATGGGCTG Direct Loss 1 0.511415453405971 1 0.738894939422607 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCGRT ENSG00000104870 CDS Human protein_coding chr19:50027862 chr19:50027862 nonsynonymous SNV 0.034 3 21 hm5C_associated_SNPs_750 0 0 1 1 50027853 50027871 mRNA hsa-miR-873 FCGRT miRanda miRanda
100 chr9 139730261 139730261 1 + C T CESC 139730261 + 139730241 139730281 41 CGCCACGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG CGCCACGCTGGAGGAGCTGTTGGTGCAGCAGGAGACGGAGG Direct Loss 1 0.531704504243389 1 0.443979382514954 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139730261 chr9:139730261 nonsynonymous SNV 0.991 2 21 hm5C_associated_SNPs_761 0 0 1 1 139730252 139730273 mRNA hsa-miR-370 C9orf86 miRanda miRanda
101 chr6 37284604 37284604 1 + C T CESC 37284604 + 37284584 37284624 41 TCCGCCTGTGGGACACATATCAGGTAGGAGGGATTCCCCGG TCCGCCTGTGGGACACATATTAGGTAGGAGGGATTCCCCGG Direct Loss 1 0.873314033889322 1 0.729830861091614 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37284604 chr6:37284604 stopgain 0.909 1 21 hm5C_associated_SNPs_774 0 0 1 2 37284584 37284605 mRNA hsa-miR-190 TBC1D22B miRanda miRanda
102 chr6 37284604 37284604 1 + C T CESC 37284604 + 37284584 37284624 41 TCCGCCTGTGGGACACATATCAGGTAGGAGGGATTCCCCGG TCCGCCTGTGGGACACATATTAGGTAGGAGGGATTCCCCGG Direct Loss 1 0.873314033889322 1 0.729830861091614 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37284604 chr6:37284604 stopgain 0.909 1 21 hm5C_associated_SNPs_774 0 0 1 2 37284585 37284605 mRNA hsa-miR-190b TBC1D22B miRanda miRanda
103 chr9 131455942 131455942 1 + C T COAD 131455942 + 131455922 131455962 41 GACGAAACGTTCGAGTCAAACGCAGAATAAAGCCAGCAGGA GACGAAACGTTCGAGTCAAATGCAGAATAAAGCCAGCAGGA Direct Loss 1 0.792952466090778 1 0.719130039215088 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455942 chr9:131455942 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_828 0 0 1 1 131455942 131455962 mRNA hsa-miR-370 SET miRanda miRanda
104 chr20 43545459 43545459 1 + C T COAD 43545459 + 43545439 43545479 41 CATTTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACAC CATTTTGAGACCCATGAGGCTGCACAGCAGGCCATCAACAC Direct Loss 1 0.2464612920911 1 0.0618321597576141 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545459 chr20:43545459 synonymous SNV . 0 21 hm5C_associated_SNPs_837 0 0 1 1 43545452 43545470 mRNA hsa-miR-370 PABPC1L miRanda miRanda
105 chr11 125513698 125513698 1 + C T COAD 125513698 + 125513678 125513718 41 CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGT CTTTTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGT Direct Loss 1 0.290853739184248 1 0.445923268795013 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513698 chr11:125513698 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_844 0 0 1 2 125513687 125513711 mRNA hsa-miR-372 CHEK1 miRanda miRanda
106 chr11 125513698 125513698 1 + C T COAD 125513698 + 125513678 125513718 41 CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGT CTTTTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGT Direct Loss 1 0.290853739184248 1 0.445923268795013 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513698 chr11:125513698 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_844 0 0 1 2 125513687 125513711 mRNA hsa-miR-520e CHEK1 miRanda miRanda
107 chr7 77214878 77214878 1 + C T COAD 77214878 + 77214858 77214898 41 AGATCATTGTAATGGCCTGCCGAGAATTTGAGATGGGAAGG AGATCATTGTAATGGCCTGCTGAGAATTTGAGATGGGAAGG Direct Loss 1 0.794293973091604 1 0.482620060443878 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77214878 chr7:77214878 stopgain 1.000 1 21 hm5C_associated_SNPs_853 0 0 1 1 77214868 77214893 mRNA hsa-miR-216a PTPN12 miRanda miRanda
108 chr15 34517761 34517761 1 + C T COAD 34517761 + 34517741 34517781 41 CGAAGTGACCGGGGCAGTGGCCAGGGAGACTCGCTCTACCC CGAAGTGACCGGGGCAGTGGTCAGGGAGACTCGCTCTACCC Direct Loss 1 0.870736288270061 1 0.771359086036682 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMC4 ENSG00000128463 CDS Human protein_coding chr15:34517761 chr15:34517761 synonymous SNV . 0 21 hm5C_associated_SNPs_855 0 0 1 1 34517739 34517764 mRNA hsa-miR-328 TMEM85 miRanda miRanda
109 chr7 142457375 142457375 1 + C G ESCA 142457375 + 142457355 142457395 41 TTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGCCT TTACCTTTGTGGCAGCTGCTGGTGAGTATCATGCCCTGCCT Direct Loss 1 0.823065835063715 1 0.643602132797241 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457375 chr7:142457375 nonsynonymous SNV 0.046 1 21 hm5C_associated_SNPs_942 0 0 0 1 142457357 142457375 mRNA hsa-miR-335 PRSS2 miRanda miRanda
110 chr4 53579475 53579475 1 + C A GBM 53579475 + 53579455 53579495 41 CACAGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGA CACAGAAGGGTAAAGTAAGTATCCATAAAACCCAGAGAAGA Direct Loss 1 0.65877127557047 1 0.905031561851501 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579475 chr4:53579475 . . 0 21 hm5C_associated_SNPs_967 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
111 chr4 53579475 53579475 1 + C A GBM 53579475 + 53579455 53579495 41 CACAGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGA CACAGAAGGGTAAAGTAAGTATCCATAAAACCCAGAGAAGA Direct Loss 1 0.65877127557047 1 0.905031561851501 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579475 chr4:53579475 . . 0 21 hm5C_associated_SNPs_967 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
112 chr5 56526784 56526784 1 + C T HNSC 56526784 + 56526764 56526804 41 GCTTTGATTCTGCTATTGGGCGTCCTAATGGAGGTAAAATT GCTTTGATTCTGCTATTGGGTGTCCTAATGGAGGTAAAATT Direct Loss 1 0.20648396539873 1 0.143549859523773 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526784 chr5:56526784 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_989 0 0 1 1 56526775 56526796 mRNA hsa-miR-136 GPBP1 miRanda miRanda
113 chr7 92987685 92987685 1 + C G HNSC 92987685 + 92987665 92987705 41 GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGACAAAA GTTTGCCTGGGATCCCATATGAATAAGAAAGCAAGACAAAA Direct Loss 1 0.54557245271098 1 0.387714862823486 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92987685 chr7:92987685 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1011 0 0 0 1 92987682 92987702 mRNA hsa-miR-431 CCDC132 miRanda miRanda
114 chr2 173429352 173429352 1 + C G HNSC 173429352 + 173429332 173429372 41 CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC CTGTCACCAGCCAGAATGTTGAGTACTTTTTGGATCGATTC Direct Loss 1 0.483048890389685 1 0.0929596424102783 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PDK1 ENSG00000152256 CDS Human protein_coding chr2:173429352 chr2:173429352 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1035 0 0 0 1 173429327 173429352 mRNA hsa-miR-543 PDK1 miRanda miRanda
115 chr12 93881384 93881384 1 + C A LGG 93881384 + 93881364 93881404 41 AGGAAGGACCTATGATAGAACAACTTAGCAAAATGTTCTTT AGGAAGGACCTATGATAGAAAAACTTAGCAAAATGTTCTTT Direct Loss 1 0.528712450821994 1 0.174349009990692 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL42 ENSG00000198015 CDS Human protein_coding chr12:93881384 chr12:93881384 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_1066 0 0 1 1 93881368 93881390 mRNA hsa-miR-382 MRPL42 miRanda miRanda
116 chrX 149905115 149905115 1 + C T LGG 149905115 + 149905095 149905135 41 GTGCTTACCCAAATGCAGAACTTGTGTTCTTGGAGATCCAC GTGCTTACCCAAATGCAGAATTTGTGTTCTTGGAGATCCAC Direct Loss 1 0.146700338750771 1 0.0302834510803223 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905115 chrX:149905115 nonsynonymous SNV 0.361 3 21 hm5C_associated_SNPs_1081 0 0 1 1 149905091 149905115 mRNA hsa-miR-544 MTMR1 miRanda miRanda
117 chr3 184082795 184082795 1 + C G LUAD 184082795 + 184082775 184082815 41 GTGAATCTTTCAAGATGGATCTAATCTTAGATGTAAACATT GTGAATCTTTCAAGATGGATGTAATCTTAGATGTAAACATT Direct Loss 1 0.206119937976136 1 0.0324731171131134 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2H ENSG00000163882 CDS Human protein_coding chr3:184082795 chr3:184082795 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_1121 0 0 1 1 184082795 184082816 mRNA hsa-miR-590-3p POLR2H miRanda miRanda
118 chr7 23221741 23221741 1 + C T LUAD 23221741 + 23221721 23221761 41 TCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTGG TCTTCCTTCAAGGCCGGTGCTGCTTTGGAGATCGGTGCTGG Direct Loss 1 0.588241269994989 1 0.0727488398551941 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221741 chr7:23221741 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1172 0 0 1 3 23221737 23221760 mRNA hsa-miR-29a NUPL2 miRanda miRanda
119 chr7 23221741 23221741 1 + C T LUAD 23221741 + 23221721 23221761 41 TCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTGG TCTTCCTTCAAGGCCGGTGCTGCTTTGGAGATCGGTGCTGG Direct Loss 1 0.588241269994989 1 0.0727488398551941 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221741 chr7:23221741 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1172 0 0 1 3 23221736 23221760 mRNA hsa-miR-29b NUPL2 miRanda miRanda
120 chr7 23221741 23221741 1 + C T LUAD 23221741 + 23221721 23221761 41 TCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTGG TCTTCCTTCAAGGCCGGTGCTGCTTTGGAGATCGGTGCTGG Direct Loss 1 0.588241269994989 1 0.0727488398551941 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221741 chr7:23221741 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1172 0 0 1 3 23221737 23221760 mRNA hsa-miR-29c NUPL2 miRanda miRanda
121 chr1 47838719 47838719 1 + C G LUSC 47838719 + 47838699 47838739 41 GACAACCTTCAAGGATGGAACAAGACCATGGATGGGAAGGC GACAACCTTCAAGGATGGAAGAAGACCATGGATGGGAAGGC Direct Loss 1 0.769367062157716 1 0.566059470176697 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838719 chr1:47838719 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_1218 0 0 1 2 47838705 47838728 mRNA hsa-miR-135a CMPK1 miRanda miRanda
122 chr1 47838719 47838719 1 + C G LUSC 47838719 + 47838699 47838739 41 GACAACCTTCAAGGATGGAACAAGACCATGGATGGGAAGGC GACAACCTTCAAGGATGGAAGAAGACCATGGATGGGAAGGC Direct Loss 1 0.769367062157716 1 0.566059470176697 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838719 chr1:47838719 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_1218 0 0 1 2 47838705 47838728 mRNA hsa-miR-135b CMPK1 miRanda miRanda
123 chr19 54711428 54711428 1 + C T LUSC 54711428 + 54711408 54711448 41 GGGGCTGGGGCTGGAGACGACGAGGAGGAGGATTAAGTCCA GGGGCTGGGGCTGGAGACGATGAGGAGGAGGATTAAGTCCA Direct Loss 1 0.885261623975629 1 0.845866322517395 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control RPS9 ENSG00000170889 CDS Human protein_coding chr19:54711428 chr19:54711428 synonymous SNV . 0 21 hm5C_associated_SNPs_1233 0 0 1 1 54711408 54711430 mRNA hsa-miR-187 RPS9 miRanda miRanda
124 chr2 37475350 37475350 1 + C A LUSC 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATACAAAGAAGATGGGAGAGAGA Direct Loss 1 0.394034310075219 1 0.28784304857254 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475350 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_1245 0 0 1 2 37475334 37475356 mRNA hsa-miR-9 C2orf56 miRanda miRanda
125 chr2 37475350 37475350 1 + C A LUSC 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATACAAAGAAGATGGGAGAGAGA Direct Loss 1 0.394034310075219 1 0.28784304857254 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475350 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_1245 0 0 1 2 37475345 37475366 mRNA hsa-miR-150 C2orf56 miRanda miRanda
126 chr1 53236907 53236907 1 + C T OV 53236907 + 53236887 53236927 41 ACAAATGGATCCAGCAGAATCTCCAGTGCCTGGTGCTGAAT ACAAATGGATCCAGCAGAATTTCCAGTGCCTGGTGCTGAAT Direct Loss 1 0.884553124128678 1 0.869754135608673 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control ZYG11B ENSG00000162378 CDS Human protein_coding chr1:53236907 chr1:53236907 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1269 0 0 0 3 53236903 53236924 mRNA hsa-miR-29a ZYG11B miRanda miRanda
127 chr1 53236907 53236907 1 + C T OV 53236907 + 53236887 53236927 41 ACAAATGGATCCAGCAGAATCTCCAGTGCCTGGTGCTGAAT ACAAATGGATCCAGCAGAATTTCCAGTGCCTGGTGCTGAAT Direct Loss 1 0.884553124128678 1 0.869754135608673 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control ZYG11B ENSG00000162378 CDS Human protein_coding chr1:53236907 chr1:53236907 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1269 0 0 0 3 53236902 53236924 mRNA hsa-miR-29b ZYG11B miRanda miRanda
128 chr1 53236907 53236907 1 + C T OV 53236907 + 53236887 53236927 41 ACAAATGGATCCAGCAGAATCTCCAGTGCCTGGTGCTGAAT ACAAATGGATCCAGCAGAATTTCCAGTGCCTGGTGCTGAAT Direct Loss 1 0.884553124128678 1 0.869754135608673 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control ZYG11B ENSG00000162378 CDS Human protein_coding chr1:53236907 chr1:53236907 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1269 0 0 0 3 53236903 53236924 mRNA hsa-miR-29c ZYG11B miRanda miRanda
129 chr1 236347193 236347193 1 + C A PAAD 236347193 + 236347173 236347213 41 TTTCTTCCGAGTTAGAAATCCTACAAAGGACCTTGTAAGTA TTTCTTCCGAGTTAGAAATCATACAAAGGACCTTGTAAGTA Direct Loss 1 0.61448611789054 1 0.207026809453964 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPR137B ENSG00000077585 CDS Human protein_coding chr1:236347193 chr1:236347193 nonsynonymous SNV 0.602 3 21 hm5C_associated_SNPs_1294 0 0 0 1 236347171 236347194 mRNA hsa-miR-876-5p GPR137B miRanda miRanda
130 chr17 72306164 72306164 1 + C T PRAD 72306164 + 72306144 72306184 41 CCCCTTCAATAGGTGTGTGACGAGGCCCTCTTCTGCCTCCG CCCCTTCAATAGGTGTGTGATGAGGCCCTCTTCTGCCTCCG Direct Loss 1 0.769122418691307 1 0.775040745735168 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306164 chr17:72306164 synonymous SNV . 0 21 hm5C_associated_SNPs_1305 0 0 0 2 72306156 72306164 mRNA hsa-miR-197 DNAI2 miRanda miRanda
131 chr17 72306164 72306164 1 + C T PRAD 72306164 + 72306144 72306184 41 CCCCTTCAATAGGTGTGTGACGAGGCCCTCTTCTGCCTCCG CCCCTTCAATAGGTGTGTGATGAGGCCCTCTTCTGCCTCCG Direct Loss 1 0.769122418691307 1 0.775040745735168 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306164 chr17:72306164 synonymous SNV . 0 21 hm5C_associated_SNPs_1305 0 0 0 2 72306156 72306165 mRNA hsa-miR-505 DNAI2 miRanda miRanda
132 chr11 107968473 107968473 1 + C T PRAD 107968473 + 107968453 107968493 41 TTCTCAGTGAACCAGGAGTTCAGTTTAATGTAAGCTCGTTA TTCTCAGTGAACCAGGAGTTTAGTTTAATGTAAGCTCGTTA Direct Loss 1 0.2556388667186 1 0.156720399856567 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107968473 chr11:107968473 synonymous SNV . 0 21 hm5C_associated_SNPs_1315 0 0 1 2 107968471 107968481 mRNA hsa-miR-33a CUL5 miRanda miRanda
133 chr11 107968473 107968473 1 + C T PRAD 107968473 + 107968453 107968493 41 TTCTCAGTGAACCAGGAGTTCAGTTTAATGTAAGCTCGTTA TTCTCAGTGAACCAGGAGTTTAGTTTAATGTAAGCTCGTTA Direct Loss 1 0.2556388667186 1 0.156720399856567 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107968473 chr11:107968473 synonymous SNV . 0 21 hm5C_associated_SNPs_1315 0 0 1 2 107968472 107968481 mRNA hsa-miR-33b CUL5 miRanda miRanda
134 chr12 95693942 95693942 1 + C T SARC 95693942 + 95693922 95693962 41 TCTTTTTTTTTATTTGAAGCCGTGTTGAAATCCTTGTCTCC TCTTTTTTTTTATTTGAAGCTGTGTTGAAATCCTTGTCTCC Direct Loss 1 0.248566763516695 1 0.481093972921371 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95693942 chr12:95693942 synonymous SNV . 0 21 hm5C_associated_SNPs_1339 0 0 1 3 95693927 95693950 mRNA hsa-miR-421 VEZT miRanda miRanda
135 chr12 95693942 95693942 1 + C T SARC 95693942 + 95693922 95693962 41 TCTTTTTTTTTATTTGAAGCCGTGTTGAAATCCTTGTCTCC TCTTTTTTTTTATTTGAAGCTGTGTTGAAATCCTTGTCTCC Direct Loss 1 0.248566763516695 1 0.481093972921371 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95693942 chr12:95693942 synonymous SNV . 0 21 hm5C_associated_SNPs_1339 0 0 1 3 95693941 95693955 mRNA hsa-miR-876-5p VEZT miRanda miRanda
136 chr12 95693942 95693942 1 + C T SARC 95693942 + 95693922 95693962 41 TCTTTTTTTTTATTTGAAGCCGTGTTGAAATCCTTGTCTCC TCTTTTTTTTTATTTGAAGCTGTGTTGAAATCCTTGTCTCC Direct Loss 1 0.248566763516695 1 0.481093972921371 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95693942 chr12:95693942 synonymous SNV . 0 21 hm5C_associated_SNPs_1339 0 0 1 3 95693934 95693955 mRNA hsa-miR-876-5p VEZT miRanda miRanda
137 chr7 142457353 142457353 1 + C T SKCM 142457353 + 142457333 142457373 41 ACCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGC ACCATGAATCCACTCCTGATTCTTACCTTTGTGGCAGCTGC Direct Loss 1 0.070710534933793 1 0.0438064932823181 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457353 chr7:142457353 synonymous SNV . 0 21 hm5C_associated_SNPs_1348 0 0 0 1 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
138 chr6 7594068 7594068 1 + C A SKCM 7594068 + 7594048 7594088 41 TTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCATA TTGAGGAAAATGGGCTATACAAAAGAAGAAGAGGTACCATA Direct Loss 1 0.633762706511742 1 0.456301480531693 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594068 chr6:7594068 synonymous SNV . 0 21 hm5C_associated_SNPs_1355 0 0 1 2 7594050 7594073 mRNA hsa-miR-9 SNRNP48 miRanda miRanda
139 chr6 7594068 7594068 1 + C A SKCM 7594068 + 7594048 7594088 41 TTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCATA TTGAGGAAAATGGGCTATACAAAAGAAGAAGAGGTACCATA Direct Loss 1 0.633762706511742 1 0.456301480531693 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594068 chr6:7594068 synonymous SNV . 0 21 hm5C_associated_SNPs_1355 0 0 1 2 7594068 7594080 mRNA hsa-miR-181d SNRNP48 miRanda miRanda
140 chr2 29344282 29344282 1 + C T SKCM 29344282 + 29344262 29344302 41 TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTG TAGAGGACCTTCCAGATTTTTCATTAGAAGGAAATCCTTTG Direct Loss 1 0.0762388127197145 1 0.102319866418839 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29344282 chr2:29344282 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_1362 0 0 1 1 29344278 29344299 mRNA hsa-miR-876-5p CLIP4 miRanda miRanda
141 chr11 65267924 65267924 1 + C T SKCM 65267924 + 65267904 65267944 41 AGACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGATGA AGACAGCAGCAGACAGGATTTCAGGAACCAGTGTTTGATGA Direct Loss 1 0.675276255487458 1 0.710430502891541 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267924 chr11:65267924 . . 0 21 hm5C_associated_SNPs_1381 0 0 1 2 65267916 65267939 lncRNA hsa-miR-141-3p MALAT1 miRanda starBase2
142 chr11 65267924 65267924 1 + C T SKCM 65267924 + 65267904 65267944 41 AGACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGATGA AGACAGCAGCAGACAGGATTTCAGGAACCAGTGTTTGATGA Direct Loss 1 0.675276255487458 1 0.710430502891541 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267924 chr11:65267924 . . 0 21 hm5C_associated_SNPs_1381 0 0 1 2 65267915 65267939 lncRNA hsa-miR-200a-3p MALAT1 miRanda starBase2
143 chr7 100205614 100205614 1 + C T SKCM 100205614 + 100205594 100205634 41 GAACAGAGGCCCCGTCCTTCCTCCAGAGAGCTTTGTGGTTC GAACAGAGGCCCCGTCCTTCTTCCAGAGAGCTTTGTGGTTC Direct Loss 1 0.888042216761723 1 0.946294724941254 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100205614 chr7:100205614 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_1425 0 0 1 1 100205593 100205615 mRNA hsa-miR-7 PCOLCE miRanda miRanda
144 chr11 65273607 65273607 1 + C T SKCM 65273607 + 65273587 65273627 41 AGATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTT AGATGCTGGTGGTTGGCACTTCTGGTTTCCAGGACGGGGTT Direct Loss 1 0.435720864655999 1 0.334457397460938 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273607 chr11:65273607 . . 0 21 hm5C_associated_SNPs_1438 0 0 0 2 65273604 65273625 lncRNA hsa-miR-1247-5p MALAT1 miRanda starBase2
145 chr11 65273607 65273607 1 + C T SKCM 65273607 + 65273587 65273627 41 AGATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTT AGATGCTGGTGGTTGGCACTTCTGGTTTCCAGGACGGGGTT Direct Loss 1 0.435720864655999 1 0.334457397460938 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273607 chr11:65273607 . . 0 21 hm5C_associated_SNPs_1438 0 0 0 2 65273592 65273612 lncRNA hsa-miR-665 MALAT1 miRanda starBase2
146 chrX 73041549 73041549 1 - G A SKCM 73041549 - 73041529 73041569 41 TGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACTCACAG TGGCTGGGCTTTGACCTTTTTCGTTTTTAAATCACTCACAG Direct Loss 1 0.0780608614303632 1 0.107963591814041 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041549 chrX:73041549 . . 0 21 hm5C_associated_SNPs_1446 0 0 1 2 73041544 73041569 lncRNA hsa-miR-191-5p XIST miRanda starBase2
147 chrX 73041549 73041549 1 - G A SKCM 73041549 - 73041529 73041569 41 TGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACTCACAG TGGCTGGGCTTTGACCTTTTTCGTTTTTAAATCACTCACAG Direct Loss 1 0.0780608614303632 1 0.107963591814041 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041549 chrX:73041549 . . 0 21 hm5C_associated_SNPs_1446 0 0 1 2 73041528 73041551 lncRNA hsa-miR-4677-3p XIST miRanda starBase2
148 chr1 150445130 150445130 1 + C T SKCM 150445130 + 150445110 150445150 41 GAGATGCACCCACTCATCTACCCTCTGTGGATCTTTCGAAC GAGATGCACCCACTCATCTATCCTCTGTGGATCTTTCGAAC Direct Loss 1 0.0324619643414245 1 0.0912310481071472 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPRD2 ENSG00000163125 CDS Human protein_coding chr1:150445130 chr1:150445130 nonsynonymous SNV 0.978 0 21 hm5C_associated_SNPs_1455 0 0 1 2 150445113 150445135 mRNA hsa-let-7b RPRD2 miRanda miRanda
149 chr1 150445130 150445130 1 + C T SKCM 150445130 + 150445110 150445150 41 GAGATGCACCCACTCATCTACCCTCTGTGGATCTTTCGAAC GAGATGCACCCACTCATCTATCCTCTGTGGATCTTTCGAAC Direct Loss 1 0.0324619643414245 1 0.0912310481071472 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPRD2 ENSG00000163125 CDS Human protein_coding chr1:150445130 chr1:150445130 nonsynonymous SNV 0.978 0 21 hm5C_associated_SNPs_1455 0 0 1 2 150445111 150445135 mRNA hsa-let-7i RPRD2 miRanda miRanda
150 chr3 179341758 179341758 1 + C T SKCM 179341758 + 179341738 179341778 41 GCATGTGAGAGGAGATGGACCCTGGTATTACTATGAGACAA GCATGTGAGAGGAGATGGACTCTGGTATTACTATGAGACAA Direct Loss 1 0.558020632114167 1 0.425185561180115 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179341758 chr3:179341758 nonsynonymous SNV 0.681 3 21 hm5C_associated_SNPs_1520 0 0 1 3 179341751 179341774 mRNA hsa-miR-26a NDUFB5 miRanda miRanda
151 chr3 179341758 179341758 1 + C T SKCM 179341758 + 179341738 179341778 41 GCATGTGAGAGGAGATGGACCCTGGTATTACTATGAGACAA GCATGTGAGAGGAGATGGACTCTGGTATTACTATGAGACAA Direct Loss 1 0.558020632114167 1 0.425185561180115 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179341758 chr3:179341758 nonsynonymous SNV 0.681 3 21 hm5C_associated_SNPs_1520 0 0 1 3 179341752 179341774 mRNA hsa-miR-26b NDUFB5 miRanda miRanda
152 chr3 179341758 179341758 1 + C T SKCM 179341758 + 179341738 179341778 41 GCATGTGAGAGGAGATGGACCCTGGTATTACTATGAGACAA GCATGTGAGAGGAGATGGACTCTGGTATTACTATGAGACAA Direct Loss 1 0.558020632114167 1 0.425185561180115 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179341758 chr3:179341758 nonsynonymous SNV 0.681 3 21 hm5C_associated_SNPs_1520 0 0 1 3 179341756 179341774 mRNA hsa-miR-1297 NDUFB5 miRanda miRanda
153 chr5 71648516 71648516 1 + C G SKCM 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAACCTGATAAAGACTGTAAAAAATGCTGCAGAAGGA Direct Loss 1 0.454887353493558 1 0.534762024879456 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648516 nonsynonymous SNV 0.003 4 21 hm5C_associated_SNPs_1528 0 0 1 4 71648507 71648530 mRNA hsa-miR-103 PTCD2 miRanda miRanda
154 chr5 71648516 71648516 1 + C G SKCM 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAACCTGATAAAGACTGTAAAAAATGCTGCAGAAGGA Direct Loss 1 0.454887353493558 1 0.534762024879456 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648516 nonsynonymous SNV 0.003 4 21 hm5C_associated_SNPs_1528 0 0 1 4 71648507 71648530 mRNA hsa-miR-107 PTCD2 miRanda miRanda
155 chr5 71648516 71648516 1 + C G SKCM 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAACCTGATAAAGACTGTAAAAAATGCTGCAGAAGGA Direct Loss 1 0.454887353493558 1 0.534762024879456 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648516 nonsynonymous SNV 0.003 4 21 hm5C_associated_SNPs_1528 0 0 1 4 71648505 71648530 mRNA hsa-miR-338-3p PTCD2 miRanda miRanda
156 chr5 71648516 71648516 1 + C G SKCM 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAACCTGATAAAGACTGTAAAAAATGCTGCAGAAGGA Direct Loss 1 0.454887353493558 1 0.534762024879456 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648516 nonsynonymous SNV 0.003 4 21 hm5C_associated_SNPs_1528 0 0 1 4 71648511 71648534 mRNA hsa-miR-544 PTCD2 miRanda miRanda
157 chr20 44050042 44050042 1 + C T SKCM 44050042 + 44050022 44050062 41 GAGGCCCCCCCAGTGCCCTTCCTGCATGCCCAGCGGTACGT GAGGCCCCCCCAGTGCCCTTTCTGCATGCCCAGCGGTACGT Direct Loss 1 0.130357020993955 1 0.262338578701019 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44050042 chr20:44050042 synonymous SNV . 0 21 hm5C_associated_SNPs_1530 0 0 1 1 44050040 44050062 mRNA hsa-miR-126 PIGT miRanda miRanda
158 chr2 127453565 127453565 1 + C T SKCM 127453565 + 127453545 127453585 41 GTCCTAGTCTCCCTCCTCTTCGTCATGCTGCGCTACATGTA GTCCTAGTCTCCCTCCTCTTTGTCATGCTGCGCTACATGTA Direct Loss 1 0.705268379990501 1 0.181394636631012 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control GYPC ENSG00000136732 CDS Human protein_coding chr2:127453565 chr2:127453565 synonymous SNV . 0 21 hm5C_associated_SNPs_1536 0 0 1 2 127453554 127453576 mRNA hsa-miR-103 GYPC miRanda miRanda
159 chr2 127453565 127453565 1 + C T SKCM 127453565 + 127453545 127453585 41 GTCCTAGTCTCCCTCCTCTTCGTCATGCTGCGCTACATGTA GTCCTAGTCTCCCTCCTCTTTGTCATGCTGCGCTACATGTA Direct Loss 1 0.705268379990501 1 0.181394636631012 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control GYPC ENSG00000136732 CDS Human protein_coding chr2:127453565 chr2:127453565 synonymous SNV . 0 21 hm5C_associated_SNPs_1536 0 0 1 2 127453554 127453576 mRNA hsa-miR-107 GYPC miRanda miRanda
160 chr6 161470199 161470199 1 + C T SKCM 161470199 + 161470179 161470219 41 CAGATATTATTAATGAAATCCTTACTTTCAAAGTCGACTAT CAGATATTATTAATGAAATCTTTACTTTCAAAGTCGACTAT Direct Loss 1 0.0685069079665691 1 0.0709399282932281 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161470199 chr6:161470199 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1559 0 0 1 1 161470179 161470200 mRNA hsa-miR-876-5p MAP3K4 miRanda miRanda
161 chr22 18209612 18209612 1 + C T STAD 18209612 + 18209592 18209632 41 GAGCTTACCTGTGTCACTGTCAGCTAGCCAGAGTTGGCACA GAGCTTACCTGTGTCACTGTTAGCTAGCCAGAGTTGGCACA Direct Loss 1 0.655006529233933 1 0.113711625337601 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCL2L13 ENSG00000099968 CDS Human protein_coding chr22:18209612 chr22:18209612 nonsynonymous SNV 0.871 4 21 hm5C_associated_SNPs_1606 0 0 1 1 18209592 18209615 mRNA hsa-miR-139-5p BCL2L13 miRanda miRanda
162 chr10 115489196 115489196 1 + C T STAD 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGTCAGGCACTTTGAGTCTCAGT Direct Loss 1 0.311000864396027 1 0.115251421928406 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489196 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1643 0 0 1 9 115489184 115489207 mRNA hsa-miR-17 CASP7 miRanda miRanda
163 chr10 115489196 115489196 1 + C T STAD 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGTCAGGCACTTTGAGTCTCAGT Direct Loss 1 0.311000864396027 1 0.115251421928406 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489196 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1643 0 0 1 9 115489185 115489207 mRNA hsa-miR-20a CASP7 miRanda miRanda
164 chr10 115489196 115489196 1 + C T STAD 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGTCAGGCACTTTGAGTCTCAGT Direct Loss 1 0.311000864396027 1 0.115251421928406 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489196 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1643 0 0 1 9 115489184 115489207 mRNA hsa-miR-93 CASP7 miRanda miRanda
165 chr10 115489196 115489196 1 + C T STAD 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGTCAGGCACTTTGAGTCTCAGT Direct Loss 1 0.311000864396027 1 0.115251421928406 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489196 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1643 0 0 1 9 115489184 115489207 mRNA hsa-miR-106a CASP7 miRanda miRanda
166 chr10 115489196 115489196 1 + C T STAD 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGTCAGGCACTTTGAGTCTCAGT Direct Loss 1 0.311000864396027 1 0.115251421928406 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489196 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1643 0 0 1 9 115489186 115489207 mRNA hsa-miR-106b CASP7 miRanda miRanda
167 chr10 115489196 115489196 1 + C T STAD 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGTCAGGCACTTTGAGTCTCAGT Direct Loss 1 0.311000864396027 1 0.115251421928406 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489196 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1643 0 0 1 9 115489195 115489216 mRNA hsa-miR-378 CASP7 miRanda miRanda
168 chr10 115489196 115489196 1 + C T STAD 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGTCAGGCACTTTGAGTCTCAGT Direct Loss 1 0.311000864396027 1 0.115251421928406 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489196 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1643 0 0 1 9 115489194 115489216 mRNA hsa-miR-422a CASP7 miRanda miRanda
169 chr10 115489196 115489196 1 + C T STAD 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGTCAGGCACTTTGAGTCTCAGT Direct Loss 1 0.311000864396027 1 0.115251421928406 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489196 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1643 0 0 1 9 115489184 115489207 mRNA hsa-miR-20b CASP7 miRanda miRanda
170 chr10 115489196 115489196 1 + C T STAD 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGTCAGGCACTTTGAGTCTCAGT Direct Loss 1 0.311000864396027 1 0.115251421928406 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489196 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1643 0 0 1 9 115489186 115489207 mRNA hsa-miR-519d CASP7 miRanda miRanda
171 chr22 32275660 32275660 1 + C T STAD 32275660 + 32275640 32275680 41 TCCTGCCCTGGCTGCCTAGCCGGCCAGCCTCCTATGCAAGT TCCTGCCCTGGCTGCCTAGCTGGCCAGCCTCCTATGCAAGT Direct Loss 1 0.515789976803234 1 0.360283970832825 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32275660 chr22:32275660 nonsynonymous SNV 0.980 3 21 hm5C_associated_SNPs_1647 0 0 0 2 32275658 32275681 mRNA hsa-miR-217 DEPDC5 miRanda miRanda
172 chr22 32275660 32275660 1 + C T STAD 32275660 + 32275640 32275680 41 TCCTGCCCTGGCTGCCTAGCCGGCCAGCCTCCTATGCAAGT TCCTGCCCTGGCTGCCTAGCTGGCCAGCCTCCTATGCAAGT Direct Loss 1 0.515789976803234 1 0.360283970832825 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32275660 chr22:32275660 nonsynonymous SNV 0.980 3 21 hm5C_associated_SNPs_1647 0 0 0 2 32275657 32275678 mRNA hsa-miR-153 DEPDC5 miRanda miRanda
173 chr1 109642959 109642959 1 + C T STAD 109642959 + 109642939 109642979 41 GTGTTAGGCGAGTGCGTGCGCCCACCCCTGCGCCCCTCCTC GTGTTAGGCGAGTGCGTGCGTCCACCCCTGCGCCCCTCCTC Direct Loss 1 0.2335704140095 1 0.793095350265503 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642959 chr1:109642959 . . 0 21 hm5C_associated_SNPs_1655 0 0 1 4 109642955 109642977 lncRNA hsa-miR-3184-5p AL356488.2 miRanda starBase2
174 chr1 109642959 109642959 1 + C T STAD 109642959 + 109642939 109642979 41 GTGTTAGGCGAGTGCGTGCGCCCACCCCTGCGCCCCTCCTC GTGTTAGGCGAGTGCGTGCGTCCACCCCTGCGCCCCTCCTC Direct Loss 1 0.2335704140095 1 0.793095350265503 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642959 chr1:109642959 . . 0 21 hm5C_associated_SNPs_1655 0 0 1 4 109642955 109642977 lncRNA hsa-miR-423-5p AL356488.2 miRanda starBase2
175 chr1 109642959 109642959 1 + C T STAD 109642959 + 109642939 109642979 41 GTGTTAGGCGAGTGCGTGCGCCCACCCCTGCGCCCCTCCTC GTGTTAGGCGAGTGCGTGCGTCCACCCCTGCGCCCCTCCTC Direct Loss 1 0.2335704140095 1 0.793095350265503 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642959 chr1:109642959 . . 0 21 hm5C_associated_SNPs_1655 0 0 1 4 109642943 109642965 lncRNA hsa-miR-541-3p AL356488.2 miRanda starBase2
176 chr1 109642959 109642959 1 + C T STAD 109642959 + 109642939 109642979 41 GTGTTAGGCGAGTGCGTGCGCCCACCCCTGCGCCCCTCCTC GTGTTAGGCGAGTGCGTGCGTCCACCCCTGCGCCCCTCCTC Direct Loss 1 0.2335704140095 1 0.793095350265503 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642959 chr1:109642959 . . 0 21 hm5C_associated_SNPs_1655 0 0 1 4 109642944 109642965 lncRNA hsa-miR-654-5p AL356488.2 miRanda starBase2
177 chr11 831623 831623 1 + C T STAD 831623 + 831603 831643 41 GGAAGGCTCTGACAACAGCCCGCCTGCCTGGGCCCACCTGC GGAAGGCTCTGACAACAGCCTGCCTGCCTGGGCCCACCTGC Direct Loss 1 0.568135962669783 1 0.0524554252624512 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:831623 chr11:831623 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_1658 0 0 1 1 831621 831646 mRNA hsa-miR-214 EFCAB4A miRanda miRanda
178 chr5 134130604 134130604 1 + C A THCA 134130604 + 134130584 134130624 41 TATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGG TATGTTTTCAGCTACTTTCCACAGAGCTATGGAGGCTTTGG Direct Loss 1 0.657057037290551 1 0.262951016426086 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130604 chr5:134130604 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1708 0 0 1 2 134130588 134130610 mRNA hsa-miR-330-5p DDX46 miRanda miRanda
179 chr5 134130604 134130604 1 + C A THCA 134130604 + 134130584 134130624 41 TATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGG TATGTTTTCAGCTACTTTCCACAGAGCTATGGAGGCTTTGG Direct Loss 1 0.657057037290551 1 0.262951016426086 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130604 chr5:134130604 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1708 0 0 1 2 134130591 134130610 mRNA hsa-miR-326 DDX46 miRanda miRanda
180 chrX 7171312 7171312 1 + C A UCEC 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCGAACATAATCCTGGTGATGGCTGACGA Direct Loss 1 0.287793832196826 1 0.0630767643451691 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171312 synonymous SNV . 0 21 hm5C_associated_SNPs_1731 0 0 1 2 7171297 7171319 mRNA hsa-miR-125a-3p STS miRanda miRanda
181 chrX 7171312 7171312 1 + C A UCEC 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCGAACATAATCCTGGTGATGGCTGACGA Direct Loss 1 0.287793832196826 1 0.0630767643451691 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171312 synonymous SNV . 0 21 hm5C_associated_SNPs_1731 0 0 1 2 7171295 7171316 mRNA hsa-miR-190b STS miRanda miRanda
182 chr20 2635125 2635125 1 + C A UCEC 2635125 + 2635105 2635145 41 CGTCCAAAAAGAAGAAAGTACTCTTGGGAGTTGGGGATCCC CGTCCAAAAAGAAGAAAGTAATCTTGGGAGTTGGGGATCCC Direct Loss 1 0.304137954324122 1 0.240497350692749 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635125 chr20:2635125 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1738 0 0 1 1 2635114 2635135 mRNA hsa-miR-150 NOP56 miRanda miRanda
183 chr12 95897859 95897859 1 + C T UCEC 95897859 + 95897839 95897879 41 AGTGTGCTGGAATTGATGTTCGTCTGTGTGATGTTGGTGAG AGTGTGCTGGAATTGATGTTTGTCTGTGTGATGTTGGTGAG Direct Loss 1 0.479726148202811 1 0.405022114515305 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95897859 chr12:95897859 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_1739 0 0 1 2 95897850 95897870 mRNA hsa-miR-377 METAP2 miRanda miRanda
184 chr12 95897859 95897859 1 + C T UCEC 95897859 + 95897839 95897879 41 AGTGTGCTGGAATTGATGTTCGTCTGTGTGATGTTGGTGAG AGTGTGCTGGAATTGATGTTTGTCTGTGTGATGTTGGTGAG Direct Loss 1 0.479726148202811 1 0.405022114515305 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95897859 chr12:95897859 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_1739 0 0 1 2 95897843 95897870 mRNA hsa-miR-421 METAP2 miRanda miRanda
185 chr19 13010519 13010519 1 + C T UCEC 13010519 + 13010499 13010539 41 ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAAGA ATTTCCCTTCTGAAGTCGTTTAGATGTGTTCCTTAAAAAGA Direct Loss 1 0.379911353690275 1 0.285151720046997 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13010519 chr19:13010519 stopgain . 0 21 hm5C_associated_SNPs_1766 0 0 1 1 13010513 13010533 mRNA hsa-miR-873 GCDH miRanda miRanda
186 chr3 160122141 160122141 1 + C T UCEC 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATGATTATGAAGTCATTCTTAACAGTAATTTCTATGTAT Direct Loss 1 0.123068329912954 1 0.0621637105941772 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122141 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1792 0 0 1 3 160122140 160122160 mRNA hsa-miR-376c SMC4 miRanda miRanda
187 chr3 160122141 160122141 1 + C T UCEC 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATGATTATGAAGTCATTCTTAACAGTAATTTCTATGTAT Direct Loss 1 0.123068329912954 1 0.0621637105941772 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122141 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1792 0 0 1 3 160122140 160122160 mRNA hsa-miR-376a SMC4 miRanda miRanda
188 chr3 160122141 160122141 1 + C T UCEC 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATGATTATGAAGTCATTCTTAACAGTAATTTCTATGTAT Direct Loss 1 0.123068329912954 1 0.0621637105941772 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122141 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1792 0 0 1 3 160122139 160122160 mRNA hsa-miR-376b SMC4 miRanda miRanda
189 chr14 60591543 60591543 1 + C T UCEC 60591543 + 60591523 60591563 41 AGTTCTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG AGTTCTATTAGGATACCCTGTTGTTGACAAAGGAAAACAAG Direct Loss 1 0.191864322248015 1 0.138024836778641 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591543 chr14:60591543 nonsynonymous SNV 0.995 0 21 hm5C_associated_SNPs_1813 0 0 1 3 60591525 60591546 mRNA hsa-miR-214 C14orf135 miRanda miRanda
190 chr14 60591543 60591543 1 + C T UCEC 60591543 + 60591523 60591563 41 AGTTCTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG AGTTCTATTAGGATACCCTGTTGTTGACAAAGGAAAACAAG Direct Loss 1 0.191864322248015 1 0.138024836778641 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591543 chr14:60591543 nonsynonymous SNV 0.995 0 21 hm5C_associated_SNPs_1813 0 0 1 3 60591532 60591551 mRNA hsa-miR-505 C14orf135 miRanda miRanda
191 chr14 60591543 60591543 1 + C T UCEC 60591543 + 60591523 60591563 41 AGTTCTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG AGTTCTATTAGGATACCCTGTTGTTGACAAAGGAAAACAAG Direct Loss 1 0.191864322248015 1 0.138024836778641 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591543 chr14:60591543 nonsynonymous SNV 0.995 0 21 hm5C_associated_SNPs_1813 0 0 1 3 60591522 60591550 mRNA hsa-miR-421 C14orf135 miRanda miRanda
192 chr14 23240646 23240646 1 + C A UCEC 23240646 + 23240626 23240666 41 TTCTCTTCTCCCCTCAGGTCCTTTACGACAGACCTTTACCC TTCTCTTCTCCCCTCAGGTCATTTACGACAGACCTTTACCC Direct Loss 1 0.118655392432452 1 0.152046382427216 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240646 chr14:23240646 nonsynonymous SNV 0.866 4 21 hm5C_associated_SNPs_1849 0 0 1 1 23240643 23240646 mRNA hsa-miR-504 OXA1L miRanda miRanda
193 chr14 75360054 75360054 1 + C A UCEC 75360054 + 75360034 75360074 41 CCTCTTTTCATTTTCAGTGTCTGCAGTAAAACCCACTGTTG CCTCTTTTCATTTTCAGTGTATGCAGTAAAACCCACTGTTG Direct Loss 1 0.85361252141707 1 0.122203946113586 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DLST ENSG00000119689 CDS Human protein_coding chr14:75360054 chr14:75360054 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_1935 0 0 0 1 75360051 75360071 mRNA hsa-miR-140-5p DLST miRanda miRanda
194 chr8 94717170 94717170 1 + C T UCEC 94717170 + 94717150 94717190 41 CAACACTCACAGCAAGGAATCGAGAAGCTAAGCAATTAACT CAACACTCACAGCAAGGAATTGAGAAGCTAAGCAATTAACT Direct Loss 1 0.80409677787361 1 0.432888239622116 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM92A ENSG00000188343 CDS Human protein_coding chr8:94717170 chr8:94717170 stopgain 0.999 1 21 hm5C_associated_SNPs_1965 0 0 0 1 94717165 94717187 mRNA hsa-miR-137 FAM92A1 miRanda miRanda
195 chr5 68425373 68425373 1 + C T UCEC 68425373 + 68425353 68425393 41 CTGGCCTAAGTACTGGATTTCATGATGTTCTGGCTATGACA CTGGCCTAAGTACTGGATTTTATGATGTTCTGGCTATGACA Direct Loss 1 0.551078019201587 1 0.332730650901794 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68425373 chr5:68425373 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1973 0 0 1 1 68425370 68425394 mRNA hsa-miR-153 SLC30A5 miRanda miRanda
196 chr1 109643194 109643194 1 + C A UCEC 109643194 + 109643174 109643214 41 ATCAGATAGACGAGGCCGGGCTTGTCCCCGGCCACTGATTA ATCAGATAGACGAGGCCGGGATTGTCCCCGGCCACTGATTA Direct Loss 1 0.288158437283561 1 0.0671777129173279 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643194 chr1:109643194 . . 0 21 hm5C_associated_SNPs_1985 0 0 1 1 109643175 109643196 lncRNA hsa-miR-3940-3p AL356488.2 miRanda starBase2
197 chr1 25679441 25679441 1 + C A UCEC 25679441 + 25679421 25679461 41 TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGCT TGATTGCATCTATGTGGATTATTTTTGGAGGTTATGTTGCT Direct Loss 1 0.0927403678942386 1 0.0175353288650513 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25679441 chr1:25679441 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_2007 0 0 1 1 25679424 25679445 mRNA hsa-miR-186 TMEM50A miRanda miRanda
198 chrX 47426451 47426451 1 + C T UCEC 47426451 + 47426431 47426471 41 CAGCCCAGCCAGCGTGTCCTCGGGGAGGAAGTCCCCACATT CAGCCCAGCCAGCGTGTCCTTGGGGAGGAAGTCCCCACATT Direct Loss 1 0.958557565186299 1 0.925739288330078 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ARAF ENSG00000078061 CDS Human protein_coding chrX:47426451 chrX:47426451 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_2053 0 0 1 2 47426450 47426471 mRNA hsa-miR-299-3p ARAF miRanda miRanda
199 chrX 47426451 47426451 1 + C T UCEC 47426451 + 47426431 47426471 41 CAGCCCAGCCAGCGTGTCCTCGGGGAGGAAGTCCCCACATT CAGCCCAGCCAGCGTGTCCTTGGGGAGGAAGTCCCCACATT Direct Loss 1 0.958557565186299 1 0.925739288330078 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ARAF ENSG00000078061 CDS Human protein_coding chrX:47426451 chrX:47426451 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_2053 0 0 1 2 47426448 47426469 mRNA hsa-miR-491-5p ARAF miRanda miRanda
200 chrX 152959718 152959718 1 + C T UCEC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATCGATCTCTCCATGGTGATTGATGTGAGTGGGGTGGGGG Direct Loss 1 0.323472637542459 1 0.0698421001434326 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959718 nonsynonymous SNV 0.995 3 21 hm5C_associated_SNPs_2063 0 0 1 3 152959697 152959720 mRNA hsa-miR-29a SLC6A8 miRanda miRanda
201 chrX 152959718 152959718 1 + C T UCEC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATCGATCTCTCCATGGTGATTGATGTGAGTGGGGTGGGGG Direct Loss 1 0.323472637542459 1 0.0698421001434326 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959718 nonsynonymous SNV 0.995 3 21 hm5C_associated_SNPs_2063 0 0 1 3 152959696 152959720 mRNA hsa-miR-29b SLC6A8 miRanda miRanda
202 chrX 152959718 152959718 1 + C T UCEC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATCGATCTCTCCATGGTGATTGATGTGAGTGGGGTGGGGG Direct Loss 1 0.323472637542459 1 0.0698421001434326 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959718 nonsynonymous SNV 0.995 3 21 hm5C_associated_SNPs_2063 0 0 1 3 152959697 152959720 mRNA hsa-miR-29c SLC6A8 miRanda miRanda
203 chr1 109643050 109643050 1 + C A UCEC 109643050 + 109643030 109643070 41 GGCCGACCCGAAATGAAAAGCTCTCCTCCTGCGAAGCCCCC GGCCGACCCGAAATGAAAAGATCTCCTCCTGCGAAGCCCCC Direct Loss 1 0.197252300379607 1 0.130846619606018 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643050 chr1:109643050 . . 0 21 hm5C_associated_SNPs_2069 0 0 1 2 109643038 109643058 lncRNA hsa-miR-3150b-3p AL356488.2 miRanda starBase2
204 chr1 109643050 109643050 1 + C A UCEC 109643050 + 109643030 109643070 41 GGCCGACCCGAAATGAAAAGCTCTCCTCCTGCGAAGCCCCC GGCCGACCCGAAATGAAAAGATCTCCTCCTGCGAAGCCCCC Direct Loss 1 0.197252300379607 1 0.130846619606018 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643050 chr1:109643050 . . 0 21 hm5C_associated_SNPs_2069 0 0 1 2 109643040 109643058 lncRNA hsa-miR-4784 AL356488.2 miRanda starBase2
205 chr11 125513701 125513701 1 + C T UCEC 125513701 + 125513681 125513721 41 TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTG TTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTGTG Direct Loss 1 0.436413788052167 1 0.214854538440704 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513701 chr11:125513701 stopgain 0.996 0 21 hm5C_associated_SNPs_2074 0 0 1 3 125513701 125513723 mRNA hsa-miR-362-3p CHEK1 miRanda miRanda
206 chr11 125513701 125513701 1 + C T UCEC 125513701 + 125513681 125513721 41 TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTG TTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTGTG Direct Loss 1 0.436413788052167 1 0.214854538440704 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513701 chr11:125513701 stopgain 0.996 0 21 hm5C_associated_SNPs_2074 0 0 1 3 125513687 125513711 mRNA hsa-miR-372 CHEK1 miRanda miRanda
207 chr11 125513701 125513701 1 + C T UCEC 125513701 + 125513681 125513721 41 TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTG TTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTGTG Direct Loss 1 0.436413788052167 1 0.214854538440704 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513701 chr11:125513701 stopgain 0.996 0 21 hm5C_associated_SNPs_2074 0 0 1 3 125513687 125513711 mRNA hsa-miR-520e CHEK1 miRanda miRanda
208 chrX 73044555 73044555 1 - G A UCS 73044555 - 73044535 73044575 41 GTGAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAAT GTGAGATCCAGACCGAAAGTTACTTAATTCAGCTTGCGAAT Direct Loss 1 0.0796581935088207 1 0.0325771868228912 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044555 chrX:73044555 . . 0 21 hm5C_associated_SNPs_2102 0 0 1 2 73044552 73044573 lncRNA hsa-miR-3164 XIST miRanda starBase2
209 chrX 73044555 73044555 1 - G A UCS 73044555 - 73044535 73044575 41 GTGAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAAT GTGAGATCCAGACCGAAAGTTACTTAATTCAGCTTGCGAAT Direct Loss 1 0.0796581935088207 1 0.0325771868228912 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044555 chrX:73044555 . . 0 21 hm5C_associated_SNPs_2102 0 0 1 2 73044552 73044573 lncRNA hsa-miR-6820-3p XIST miRanda starBase2
210 chr4 113298991 113298991 1 + C A LAML 113298991 + 113298971 113299011 41 AGTGCAAGCAAGTGCTGGATCAGCTCTTGTTGGAAGCGCCA AGTGCAAGCAAGTGCTGGATAAGCTCTTGTTGGAAGCGCCA Direct Loss 1 0.592313044590591 1 0.161133825778961 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113298991 chr4:113298991 nonsynonymous SNV 0.951 0 21 hm5C_associated_SNPs_2109 0 0 0 1 113298978 113299000 mRNA hsa-miR-335 ALPK1 miRanda miRanda
211 chr1 1227288 1227288 1 + C T rs549619477 1227297 + 1227277 1227317 41 GCATGTCCACACGTCTGATGCACCTGTGTACGTGTGTCAAG GCATGTCCACATGTCTGATGCACCTGTGTACGTGTGTCAAG < 41bp 1 0.478457228408254 1 0.0384926795959473 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCNN1D ENSG00000162572 UTR3 Human protein_coding chr1:1227297 chr1:1227288 . . 0 12 hm5C_associated_SNPs_2144 0 0 1 1 1227281 1227303 mRNA hsa-miR-148b SCNN1D miRanda miRanda
212 chr1 3545612 3545612 1 + A G rs1128474 3545622 + 3545602 3545642 41 AGTTGCAAGTATGTTTACACCTGGTGTCCAATTTTGTATTT AGTTGCAAGTGTGTTTACACCTGGTGTCCAATTTTGTATTT < 41bp 1 0.796531656135657 1 0.113229185342789 experiment 0.406936687728687 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TPRG1L ENSG00000158109 UTR3 Human protein_coding chr1:3545622 chr1:3545612 . . 0 11 hm5C_associated_SNPs_2196 0 0 0 7 3545597 3545620 mRNA hsa-miR-30a TPRG1L miRanda miRanda
213 chr1 3545612 3545612 1 + A G rs1128474 3545622 + 3545602 3545642 41 AGTTGCAAGTATGTTTACACCTGGTGTCCAATTTTGTATTT AGTTGCAAGTGTGTTTACACCTGGTGTCCAATTTTGTATTT < 41bp 1 0.796531656135657 1 0.113229185342789 experiment 0.406936687728687 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TPRG1L ENSG00000158109 UTR3 Human protein_coding chr1:3545622 chr1:3545612 . . 0 11 hm5C_associated_SNPs_2196 0 0 0 7 3545605 3545633 mRNA hsa-miR-96 TPRG1L miRanda miRanda
214 chr1 3545612 3545612 1 + A G rs1128474 3545622 + 3545602 3545642 41 AGTTGCAAGTATGTTTACACCTGGTGTCCAATTTTGTATTT AGTTGCAAGTGTGTTTACACCTGGTGTCCAATTTTGTATTT < 41bp 1 0.796531656135657 1 0.113229185342789 experiment 0.406936687728687 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TPRG1L ENSG00000158109 UTR3 Human protein_coding chr1:3545622 chr1:3545612 . . 0 11 hm5C_associated_SNPs_2196 0 0 0 7 3545604 3545626 mRNA hsa-miR-199a-5p TPRG1L miRanda miRanda
215 chr1 3545612 3545612 1 + A G rs1128474 3545622 + 3545602 3545642 41 AGTTGCAAGTATGTTTACACCTGGTGTCCAATTTTGTATTT AGTTGCAAGTGTGTTTACACCTGGTGTCCAATTTTGTATTT < 41bp 1 0.796531656135657 1 0.113229185342789 experiment 0.406936687728687 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TPRG1L ENSG00000158109 UTR3 Human protein_coding chr1:3545622 chr1:3545612 . . 0 11 hm5C_associated_SNPs_2196 0 0 0 7 3545598 3545620 mRNA hsa-miR-30c TPRG1L miRanda miRanda
216 chr1 3545612 3545612 1 + A G rs1128474 3545622 + 3545602 3545642 41 AGTTGCAAGTATGTTTACACCTGGTGTCCAATTTTGTATTT AGTTGCAAGTGTGTTTACACCTGGTGTCCAATTTTGTATTT < 41bp 1 0.796531656135657 1 0.113229185342789 experiment 0.406936687728687 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TPRG1L ENSG00000158109 UTR3 Human protein_coding chr1:3545622 chr1:3545612 . . 0 11 hm5C_associated_SNPs_2196 0 0 0 7 3545597 3545620 mRNA hsa-miR-30d TPRG1L miRanda miRanda
217 chr1 3545612 3545612 1 + A G rs1128474 3545622 + 3545602 3545642 41 AGTTGCAAGTATGTTTACACCTGGTGTCCAATTTTGTATTT AGTTGCAAGTGTGTTTACACCTGGTGTCCAATTTTGTATTT < 41bp 1 0.796531656135657 1 0.113229185342789 experiment 0.406936687728687 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TPRG1L ENSG00000158109 UTR3 Human protein_coding chr1:3545622 chr1:3545612 . . 0 11 hm5C_associated_SNPs_2196 0 0 0 7 3545596 3545620 mRNA hsa-miR-30b TPRG1L miRanda miRanda
218 chr1 3545612 3545612 1 + A G rs1128474 3545622 + 3545602 3545642 41 AGTTGCAAGTATGTTTACACCTGGTGTCCAATTTTGTATTT AGTTGCAAGTGTGTTTACACCTGGTGTCCAATTTTGTATTT < 41bp 1 0.796531656135657 1 0.113229185342789 experiment 0.406936687728687 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TPRG1L ENSG00000158109 UTR3 Human protein_coding chr1:3545622 chr1:3545612 . . 0 11 hm5C_associated_SNPs_2196 0 0 0 7 3545597 3545620 mRNA hsa-miR-30e TPRG1L miRanda miRanda
219 chr1 15756406 15756406 1 + C T rs115472852 15756420 + 15756400 15756440 41 CTGTGTCGTGAAACTGTGACCATCACTCAGTCCAAACAAGT CTGTGTTGTGAAACTGTGACCATCACTCAGTCCAAACAAGT < 41bp 1 0.346387274273542 1 0.0524154305458069 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFHD2 ENSG00000142634 UTR3 Human protein_coding chr1:15756420 chr1:15756406 . . 0 7 hm5C_associated_SNPs_2263 0 0 1 3 15756399 15756419 mRNA hsa-miR-27a EFHD2 miRanda miRanda
220 chr1 15756406 15756406 1 + C T rs115472852 15756420 + 15756400 15756440 41 CTGTGTCGTGAAACTGTGACCATCACTCAGTCCAAACAAGT CTGTGTTGTGAAACTGTGACCATCACTCAGTCCAAACAAGT < 41bp 1 0.346387274273542 1 0.0524154305458069 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFHD2 ENSG00000142634 UTR3 Human protein_coding chr1:15756420 chr1:15756406 . . 0 7 hm5C_associated_SNPs_2263 0 0 1 3 15756399 15756419 mRNA hsa-miR-27b EFHD2 miRanda miRanda
221 chr1 15756406 15756406 1 + C T rs115472852 15756420 + 15756400 15756440 41 CTGTGTCGTGAAACTGTGACCATCACTCAGTCCAAACAAGT CTGTGTTGTGAAACTGTGACCATCACTCAGTCCAAACAAGT < 41bp 1 0.346387274273542 1 0.0524154305458069 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFHD2 ENSG00000142634 UTR3 Human protein_coding chr1:15756420 chr1:15756406 . . 0 7 hm5C_associated_SNPs_2263 0 0 1 3 15756390 15756411 mRNA hsa-miR-377 EFHD2 miRanda miRanda
222 chr1 17199141 17199141 1 + G A rs563531853 17199121 + 17199101 17199141 41 ATTCGGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGG ATTCGGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGA < 41bp 1 0.225379294208998 1 0.375077217817307 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199121 chr1:17199141 . . 0 41 hm5C_associated_SNPs_2408 0 0 1 1 17199140 17199164 lncRNA hsa-miR-199a-5p BX284668.2 miRanda starBase2
223 chr1 17199141 17199141 1 + G A rs563531853 17199124 + 17199104 17199144 41 CGGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGGCCA CGGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGACCA < 41bp 1 0.536337660632911 1 0.387405425310135 experiment 0.927324678734178 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199124 chr1:17199141 . . 0 38 hm5C_associated_SNPs_2409 0 0 1 1 17199140 17199164 lncRNA hsa-miR-199a-5p BX284668.2 miRanda starBase2
224 chr1 17199141 17199141 1 + G A rs563531853 17199125 + 17199105 17199145 41 GGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGGCCAG GGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGACCAG < 41bp 1 0.574202808270216 1 0.478431761264801 experiment 0.851594383459567 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199125 chr1:17199141 . . 0 37 hm5C_associated_SNPs_2410 0 0 1 1 17199140 17199164 lncRNA hsa-miR-199a-5p BX284668.2 miRanda starBase2
225 chr1 17199141 17199141 1 + G A rs563531853 17199126 + 17199106 17199146 41 GCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGGCCAGG GCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGACCAGG < 41bp 1 0.394939088160567 1 0.543634057044983 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199126 chr1:17199141 . . 0 36 hm5C_associated_SNPs_2411 0 0 1 1 17199140 17199164 lncRNA hsa-miR-199a-5p BX284668.2 miRanda starBase2
226 chr1 17199141 17199141 1 + G A rs563531853 17199132 + 17199112 17199152 41 TCACCGCCGCGGCCCGGGTTCGATTCCCGGCCAGGGAATTG TCACCGCCGCGGCCCGGGTTCGATTCCCGACCAGGGAATTG < 41bp 1 0.150108398192384 1 0.0449329614639282 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199132 chr1:17199141 . . 0 30 hm5C_associated_SNPs_2412 0 0 1 1 17199140 17199164 lncRNA hsa-miR-199a-5p BX284668.2 miRanda starBase2
227 chr1 17199141 17199141 1 + G A rs563531853 17199137 + 17199117 17199157 41 GCCGCGGCCCGGGTTCGATTCCCGGCCAGGGAATTGTTTTA GCCGCGGCCCGGGTTCGATTCCCGACCAGGGAATTGTTTTA < 41bp 1 0.517751436618736 1 0.802772521972656 experiment 0.964497126762528 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199137 chr1:17199141 . . 0 25 hm5C_associated_SNPs_2413 0 0 1 1 17199140 17199164 lncRNA hsa-miR-199a-5p BX284668.2 miRanda starBase2
228 chr1 17199141 17199141 1 + G A rs563531853 17199138 + 17199118 17199158 41 CCGCGGCCCGGGTTCGATTCCCGGCCAGGGAATTGTTTTAC CCGCGGCCCGGGTTCGATTCCCGACCAGGGAATTGTTTTAC < 41bp 1 0.121957900475333 1 0.368544161319733 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199138 chr1:17199141 . . 0 24 hm5C_associated_SNPs_2414 0 0 1 1 17199140 17199164 lncRNA hsa-miR-199a-5p BX284668.2 miRanda starBase2
229 chr1 17199141 17199141 1 + G A rs563531853 17199139 + 17199119 17199159 41 CGCGGCCCGGGTTCGATTCCCGGCCAGGGAATTGTTTTACA CGCGGCCCGGGTTCGATTCCCGACCAGGGAATTGTTTTACA < 41bp 1 0.215191316809816 1 0.185645788908005 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199139 chr1:17199141 . . 0 23 hm5C_associated_SNPs_2415 0 0 1 1 17199140 17199164 lncRNA hsa-miR-199a-5p BX284668.2 miRanda starBase2
230 chr1 17199141 17199141 1 + G A rs563531853 17199143 + 17199123 17199163 41 GCCCGGGTTCGATTCCCGGCCAGGGAATTGTTTTACACTGG GCCCGGGTTCGATTCCCGACCAGGGAATTGTTTTACACTGG < 41bp 1 0.66811938429446 1 0.746017694473267 experiment 0.663761231411079 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199143 chr1:17199141 . . 0 19 hm5C_associated_SNPs_2416 0 0 1 1 17199140 17199164 lncRNA hsa-miR-199a-5p BX284668.2 miRanda starBase2
231 chr1 24114473 24114473 1 + G A rs117386588 24114482 + 24114462 24114502 41 CTTAAGCTTGGGGAGAAGGTCTTTTCCACTGCCTAGCTAAG CTTAAGCTTGGAGAGAAGGTCTTTTCCACTGCCTAGCTAAG < 41bp 1 0.165406952132803 1 0.0183172225952148 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PITHD1 ENSG00000057757 UTR3 Human protein_coding chr1:24114482 chr1:24114473 . . 0 12 hm5C_associated_SNPs_2578 0 0 1 1 24114473 24114495 mRNA hsa-miR-34c-5p C1orf128 miRanda miRanda
232 chr1 24114480 24114480 1 + G A rs368216872 24114482 + 24114462 24114502 41 CTTAAGCTTGGGGAGAAGGTCTTTTCCACTGCCTAGCTAAG CTTAAGCTTGGGGAGAAGATCTTTTCCACTGCCTAGCTAAG < 41bp 1 0.218657969828496 1 0.0280488431453705 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PITHD1 ENSG00000057757 UTR3 Human protein_coding chr1:24114482 chr1:24114480 . . 0 19 hm5C_associated_SNPs_2579 0 0 1 4 24114474 24114495 mRNA hsa-miR-34a C1orf128 miRanda miRanda
233 chr1 24114480 24114480 1 + G A rs368216872 24114482 + 24114462 24114502 41 CTTAAGCTTGGGGAGAAGGTCTTTTCCACTGCCTAGCTAAG CTTAAGCTTGGGGAGAAGATCTTTTCCACTGCCTAGCTAAG < 41bp 1 0.218657969828496 1 0.0280488431453705 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PITHD1 ENSG00000057757 UTR3 Human protein_coding chr1:24114482 chr1:24114480 . . 0 19 hm5C_associated_SNPs_2579 0 0 1 4 24114473 24114495 mRNA hsa-miR-34c-5p C1orf128 miRanda miRanda
234 chr1 24114480 24114480 1 + G A rs368216872 24114482 + 24114462 24114502 41 CTTAAGCTTGGGGAGAAGGTCTTTTCCACTGCCTAGCTAAG CTTAAGCTTGGGGAGAAGATCTTTTCCACTGCCTAGCTAAG < 41bp 1 0.218657969828496 1 0.0280488431453705 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PITHD1 ENSG00000057757 UTR3 Human protein_coding chr1:24114482 chr1:24114480 . . 0 19 hm5C_associated_SNPs_2579 0 0 1 4 24114474 24114495 mRNA hsa-miR-449a C1orf128 miRanda miRanda
235 chr1 24114480 24114480 1 + G A rs368216872 24114482 + 24114462 24114502 41 CTTAAGCTTGGGGAGAAGGTCTTTTCCACTGCCTAGCTAAG CTTAAGCTTGGGGAGAAGATCTTTTCCACTGCCTAGCTAAG < 41bp 1 0.218657969828496 1 0.0280488431453705 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PITHD1 ENSG00000057757 UTR3 Human protein_coding chr1:24114482 chr1:24114480 . . 0 19 hm5C_associated_SNPs_2579 0 0 1 4 24114474 24114495 mRNA hsa-miR-449b C1orf128 miRanda miRanda
236 chr1 27181427 27181427 1 + G A rs760093 27181407 + 27181387 27181427 41 CATATCCCCTGGGCTGCCCCCTGCCCCATCCCCTTTGAGTG CATATCCCCTGGGCTGCCCCCTGCCCCATCCCCTTTGAGTA < 41bp 1 0.217349754281451 1 0.444362282752991 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZDHHC18 ENSG00000204160 UTR3 Human protein_coding chr1:27181407 chr1:27181427 . . 0 41 hm5C_associated_SNPs_2627 0 0 1 1 27181423 27181446 mRNA hsa-miR-24 ZDHHC18 miRanda miRanda
237 chr1 27181427 27181427 1 + G A rs760093 27181411 + 27181391 27181431 41 TCCCCTGGGCTGCCCCCTGCCCCATCCCCTTTGAGTGTCAG TCCCCTGGGCTGCCCCCTGCCCCATCCCCTTTGAGTATCAG < 41bp 1 0.0629265147350358 1 0.461398959159851 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZDHHC18 ENSG00000204160 UTR3 Human protein_coding chr1:27181411 chr1:27181427 . . 0 37 hm5C_associated_SNPs_2628 0 0 1 1 27181423 27181446 mRNA hsa-miR-24 ZDHHC18 miRanda miRanda
238 chr1 28975120 28975120 1 + C A rs145438715 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC ATTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC < 41bp 1 0.613649537680613 1 0.200993150472641 experiment 0.772700924638773 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975120 . . 0 1 hm5C_associated_SNPs_2651 0 0 1 4 28975112 28975132 mRNA hsa-miR-377 RNU11 miRanda miRanda
239 chr1 28975120 28975120 1 + C A rs145438715 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC ATTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC < 41bp 1 0.613649537680613 1 0.200993150472641 experiment 0.772700924638773 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975120 . . 0 1 hm5C_associated_SNPs_2651 0 0 1 4 28975112 28975133 mRNA hsa-miR-342-3p RNU11 miRanda miRanda
240 chr1 28975120 28975120 1 + C A rs145438715 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC ATTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC < 41bp 1 0.613649537680613 1 0.200993150472641 experiment 0.772700924638773 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975120 . . 0 1 hm5C_associated_SNPs_2651 0 0 1 4 28975112 28975122 lncRNA hsa-miR-129-1-3p AL360012.1 miRanda starBase2
241 chr1 28975120 28975120 1 + C A rs145438715 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC ATTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC < 41bp 1 0.613649537680613 1 0.200993150472641 experiment 0.772700924638773 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975120 . . 0 1 hm5C_associated_SNPs_2651 0 0 1 4 28975112 28975122 lncRNA hsa-miR-129-2-3p AL360012.1 miRanda starBase2
242 chr1 28975127 28975127 1 + C G rs192651029 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC CTTCTGTGGTGAGTGGCACACGTAGGGCAACTCGATTGCTC < 41bp 1 0.661451080009655 1 0.242402166128159 experiment 0.677097839980689 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975127 . . 0 8 hm5C_associated_SNPs_2652 0 0 1 2 28975112 28975132 mRNA hsa-miR-377 RNU11 miRanda miRanda
243 chr1 28975127 28975127 1 + C G rs192651029 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC CTTCTGTGGTGAGTGGCACACGTAGGGCAACTCGATTGCTC < 41bp 1 0.661451080009655 1 0.242402166128159 experiment 0.677097839980689 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975127 . . 0 8 hm5C_associated_SNPs_2652 0 0 1 2 28975112 28975133 mRNA hsa-miR-342-3p RNU11 miRanda miRanda
244 chr1 28975174 28975174 1 + G A rs541092342 28975167 + 28975147 28975187 41 CAACTCGATTGCTCTGCGTGCGGAATCGACATCAAGAGATT CAACTCGATTGCTCTGCGTGCGGAATCAACATCAAGAGATT < 41bp 1 0.719660962645743 1 0.766654968261719 experiment 0.560678074708515 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975167 chr1:28975174 . . 0 28 hm5C_associated_SNPs_2659 0 0 1 2 28975167 28975188 mRNA hsa-miR-216b RNU11 miRanda miRanda
245 chr1 28975174 28975174 1 + G A rs541092342 28975167 + 28975147 28975187 41 CAACTCGATTGCTCTGCGTGCGGAATCGACATCAAGAGATT CAACTCGATTGCTCTGCGTGCGGAATCAACATCAAGAGATT < 41bp 1 0.719660962645743 1 0.766654968261719 experiment 0.560678074708515 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975167 chr1:28975174 . . 0 28 hm5C_associated_SNPs_2659 0 0 1 2 28975167 28975188 lncRNA hsa-miR-216b-5p AL360012.1 miRanda starBase2
246 chr1 28975174 28975174 1 + G A rs541092342 28975176 + 28975156 28975196 41 TGCTCTGCGTGCGGAATCGACATCAAGAGATTTCGGAAGCA TGCTCTGCGTGCGGAATCAACATCAAGAGATTTCGGAAGCA < 41bp 1 0.666608274365171 1 0.0956124663352966 experiment 0.666783451269658 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975176 chr1:28975174 . . 0 19 hm5C_associated_SNPs_2660 0 0 1 2 28975167 28975188 mRNA hsa-miR-216b RNU11 miRanda miRanda
247 chr1 28975174 28975174 1 + G A rs541092342 28975176 + 28975156 28975196 41 TGCTCTGCGTGCGGAATCGACATCAAGAGATTTCGGAAGCA TGCTCTGCGTGCGGAATCAACATCAAGAGATTTCGGAAGCA < 41bp 1 0.666608274365171 1 0.0956124663352966 experiment 0.666783451269658 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975176 chr1:28975174 . . 0 19 hm5C_associated_SNPs_2660 0 0 1 2 28975167 28975188 lncRNA hsa-miR-216b-5p AL360012.1 miRanda starBase2
248 chr1 28975209 28975209 1 + A C rs111868204 28975227 + 28975207 28975247 41 GTATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC GTCTTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC < 41bp 1 0.63456954863817 1 0.463653892278671 experiment 0.730860902723661 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975227 chr1:28975209 . . 0 3 hm5C_associated_SNPs_2661 0 0 1 2 28975197 28975221 mRNA hsa-miR-22 RNU11 miRanda miRanda
249 chr1 28975209 28975209 1 + A C rs111868204 28975227 + 28975207 28975247 41 GTATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC GTCTTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC < 41bp 1 0.63456954863817 1 0.463653892278671 experiment 0.730860902723661 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975227 chr1:28975209 . . 0 3 hm5C_associated_SNPs_2661 0 0 1 2 28975197 28975221 lncRNA hsa-miR-22-3p AL360012.1 miRanda starBase2
250 chr1 28975216 28975216 1 + C A rs192996376 28975227 + 28975207 28975247 41 GTATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC GTATTTGGGAAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC < 41bp 1 0.62137618812669 1 0.257187962532043 experiment 0.757247623746619 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975227 chr1:28975216 . . 0 10 hm5C_associated_SNPs_2662 0 0 1 2 28975197 28975221 mRNA hsa-miR-22 RNU11 miRanda miRanda
251 chr1 28975216 28975216 1 + C A rs192996376 28975227 + 28975207 28975247 41 GTATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC GTATTTGGGAAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC < 41bp 1 0.62137618812669 1 0.257187962532043 experiment 0.757247623746619 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975227 chr1:28975216 . . 0 10 hm5C_associated_SNPs_2662 0 0 1 2 28975197 28975221 lncRNA hsa-miR-22-3p AL360012.1 miRanda starBase2
252 chr1 28975216 28975216 1 + C A rs192996376 28975234 + 28975214 28975254 41 GGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTG GGAAGCTGGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTG < 41bp 1 0.648826060388039 1 0.506487488746643 experiment 0.702347879223921 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975234 chr1:28975216 . . 0 3 hm5C_associated_SNPs_2663 0 0 1 2 28975197 28975221 mRNA hsa-miR-22 RNU11 miRanda miRanda
253 chr1 28975216 28975216 1 + C A rs192996376 28975234 + 28975214 28975254 41 GGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTG GGAAGCTGGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTG < 41bp 1 0.648826060388039 1 0.506487488746643 experiment 0.702347879223921 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975234 chr1:28975216 . . 0 3 hm5C_associated_SNPs_2663 0 0 1 2 28975197 28975221 lncRNA hsa-miR-22-3p AL360012.1 miRanda starBase2
254 chr1 28975221 28975221 1 + G A rs143926421 28975227 + 28975207 28975247 41 GTATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC GTATTTGGGCAGCTAGTGATCGTTGGTCCCGGCGCCCTTTC < 41bp 1 0.628259334833751 1 0.447669386863708 experiment 0.743481330332499 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975227 chr1:28975221 . . 0 15 hm5C_associated_SNPs_2664 0 0 1 2 28975197 28975221 mRNA hsa-miR-22 RNU11 miRanda miRanda
255 chr1 28975221 28975221 1 + G A rs143926421 28975227 + 28975207 28975247 41 GTATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC GTATTTGGGCAGCTAGTGATCGTTGGTCCCGGCGCCCTTTC < 41bp 1 0.628259334833751 1 0.447669386863708 experiment 0.743481330332499 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975227 chr1:28975221 . . 0 15 hm5C_associated_SNPs_2664 0 0 1 2 28975197 28975221 lncRNA hsa-miR-22-3p AL360012.1 miRanda starBase2
256 chr1 28975221 28975221 1 + G A rs143926421 28975234 + 28975214 28975254 41 GGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTG GGCAGCTAGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTG < 41bp 1 0.618993363853183 1 0.547265768051147 experiment 0.762013272293634 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975234 chr1:28975221 . . 0 8 hm5C_associated_SNPs_2665 0 0 1 2 28975197 28975221 mRNA hsa-miR-22 RNU11 miRanda miRanda
257 chr1 28975221 28975221 1 + G A rs143926421 28975234 + 28975214 28975254 41 GGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTG GGCAGCTAGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTG < 41bp 1 0.618993363853183 1 0.547265768051147 experiment 0.762013272293634 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975234 chr1:28975221 . . 0 8 hm5C_associated_SNPs_2665 0 0 1 2 28975197 28975221 lncRNA hsa-miR-22-3p AL360012.1 miRanda starBase2
258 chr1 28975221 28975221 1 + G A rs143926421 28975241 + 28975221 28975261 41 GGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATG AGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATG < 41bp 1 0.0489124082613244 1 0.0363006591796875 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975241 chr1:28975221 . . 0 1 hm5C_associated_SNPs_2666 0 0 1 2 28975197 28975221 mRNA hsa-miR-22 RNU11 miRanda miRanda
259 chr1 28975221 28975221 1 + G A rs143926421 28975241 + 28975221 28975261 41 GGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATG AGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATG < 41bp 1 0.0489124082613244 1 0.0363006591796875 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975241 chr1:28975221 . . 0 1 hm5C_associated_SNPs_2666 0 0 1 2 28975197 28975221 lncRNA hsa-miR-22-3p AL360012.1 miRanda starBase2
260 chr1 36032289 36032289 1 + C G rs575330822 36032269 + 36032249 36032289 41 CACACACACACACACACACACACACACACACACTCTTGATC CACACACACACACACACACACACACACACACACTCTTGATG < 41bp 1 0.289974165630603 1 0.0716461539268494 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCDN ENSG00000020129 UTR3 Human protein_coding chr1:36032269 chr1:36032289 . . 0 41 hm5C_associated_SNPs_2720 0 0 1 1 36032268 36032290 mRNA hsa-miR-383 NCDN miRanda miRanda
261 chr1 36032289 36032289 1 + C G rs575330822 36032271 + 36032251 36032291 41 CACACACACACACACACACACACACACACACTCTTGATCCC CACACACACACACACACACACACACACACACTCTTGATGCC < 41bp 1 0.319841293731875 1 0.158643484115601 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCDN ENSG00000020129 UTR3 Human protein_coding chr1:36032271 chr1:36032289 . . 0 39 hm5C_associated_SNPs_2721 0 0 1 1 36032268 36032290 mRNA hsa-miR-383 NCDN miRanda miRanda
262 chr1 36032289 36032289 1 + C G rs575330822 36032273 + 36032253 36032293 41 CACACACACACACACACACACACACACACTCTTGATCCCTT CACACACACACACACACACACACACACACTCTTGATGCCTT < 41bp 1 0.31818005499136 1 0.162828147411346 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCDN ENSG00000020129 UTR3 Human protein_coding chr1:36032273 chr1:36032289 . . 0 37 hm5C_associated_SNPs_2722 0 0 1 1 36032268 36032290 mRNA hsa-miR-383 NCDN miRanda miRanda
263 chr1 36032289 36032289 1 + C G rs575330822 36032275 + 36032255 36032295 41 CACACACACACACACACACACACACACTCTTGATCCCTTGC CACACACACACACACACACACACACACTCTTGATGCCTTGC < 41bp 1 0.271771609816997 1 0.0630843937397003 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCDN ENSG00000020129 UTR3 Human protein_coding chr1:36032275 chr1:36032289 . . 0 35 hm5C_associated_SNPs_2723 0 0 1 1 36032268 36032290 mRNA hsa-miR-383 NCDN miRanda miRanda
264 chr1 36032289 36032289 1 + C G rs575330822 36032277 + 36032257 36032297 41 CACACACACACACACACACACACACTCTTGATCCCTTGCTT CACACACACACACACACACACACACTCTTGATGCCTTGCTT < 41bp 1 0.331437975900975 1 0.0536175668239594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCDN ENSG00000020129 UTR3 Human protein_coding chr1:36032277 chr1:36032289 . . 0 33 hm5C_associated_SNPs_2724 0 0 1 1 36032268 36032290 mRNA hsa-miR-383 NCDN miRanda miRanda
265 chr1 36646029 36646029 1 + G A rs186075701 36646039 + 36646019 36646059 41 CTCTTTGGCCGGAGCCAGATCTGCCCCTCAGTGCATTCGTG CTCTTTGGCCAGAGCCAGATCTGCCCCTCAGTGCATTCGTG < 41bp 1 0.252691951142259 1 0.0758446753025055 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP7D1 ENSG00000116871 UTR3 Human protein_coding chr1:36646039 chr1:36646029 . . 0 11 hm5C_associated_SNPs_2730 0 0 1 1 36646016 36646037 mRNA hsa-miR-149 MAP7D1 miRanda miRanda
266 chr1 38174583 38174583 1 + A C rs141712543 38174592 + 38174572 38174612 41 GCAGTGACCTCAGTAGGGAACATGTCCGTCTACCCTCTCGC GCAGTGACCTCCGTAGGGAACATGTCCGTCTACCCTCTCGC < 41bp 1 0.568921585554848 1 0.172007203102112 experiment 0.862156828890305 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDCA8 ENSG00000134690 UTR3 Human protein_coding chr1:38174592 chr1:38174583 . . 0 12 hm5C_associated_SNPs_2739 0 0 1 1 38174579 38174599 mRNA hsa-miR-613 CDCA8 miRanda miRanda
267 chr1 45116466 45116466 1 + G A rs374199001 45116468 + 45116448 45116488 41 GCTATCTGCCCCAGGCAGGCCTCGCCTCCAGCAGCCCCACC GCTATCTGCCCCAGGCAGACCTCGCCTCCAGCAGCCCCACC < 41bp 1 0.629063476154961 1 0.338775813579559 experiment 0.741873047690078 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF220 ENSG00000187147 UTR3 Human protein_coding chr1:45116468 chr1:45116466 . . 0 19 hm5C_associated_SNPs_2782 0 0 1 1 45116448 45116467 mRNA hsa-miR-370 RNF220 miRanda miRanda
268 chr1 45116466 45116466 1 + G A rs374199001 45116470 + 45116450 45116490 41 TATCTGCCCCAGGCAGGCCTCGCCTCCAGCAGCCCCACCTG TATCTGCCCCAGGCAGACCTCGCCTCCAGCAGCCCCACCTG < 41bp 1 0.728079680579977 1 0.780966401100159 experiment 0.543840638840047 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 UTR3 Human protein_coding chr1:45116470 chr1:45116466 . . 0 17 hm5C_associated_SNPs_2783 0 0 1 1 45116448 45116467 mRNA hsa-miR-370 RNF220 miRanda miRanda
269 chr1 45242241 45242241 1 + C A rs377221663 45242222 + 45242202 45242242 41 CCGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACT CCGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAAT < 41bp 1 0.088519399822264 1 0.0854395031929016 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242222 chr1:45242241 . . 0 40 hm5C_associated_SNPs_2798 0 0 1 6 45242241 45242260 mRNA hsa-miR-199a-5p SNORD46 miRanda miRanda
270 chr1 45242241 45242241 1 + C A rs377221663 45242222 + 45242202 45242242 41 CCGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACT CCGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAAT < 41bp 1 0.088519399822264 1 0.0854395031929016 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242222 chr1:45242241 . . 0 40 hm5C_associated_SNPs_2798 0 0 1 6 45242234 45242260 mRNA hsa-miR-199b-5p SNORD46 miRanda miRanda
271 chr1 45242241 45242241 1 + C A rs377221663 45242222 + 45242202 45242242 41 CCGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACT CCGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAAT < 41bp 1 0.088519399822264 1 0.0854395031929016 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242222 chr1:45242241 . . 0 40 hm5C_associated_SNPs_2798 0 0 1 6 45242240 45242261 mRNA hsa-miR-223 SNORD46 miRanda miRanda
272 chr1 45242241 45242241 1 + C A rs377221663 45242222 + 45242202 45242242 41 CCGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACT CCGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAAT < 41bp 1 0.088519399822264 1 0.0854395031929016 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242222 chr1:45242241 . . 0 40 hm5C_associated_SNPs_2798 0 0 1 6 45242241 45242261 mRNA hsa-miR-34c-5p SNORD46 miRanda miRanda
273 chr1 45242241 45242241 1 + C A rs377221663 45242222 + 45242202 45242242 41 CCGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACT CCGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAAT < 41bp 1 0.088519399822264 1 0.0854395031929016 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242222 chr1:45242241 . . 0 40 hm5C_associated_SNPs_2798 0 0 1 6 45242239 45242261 mRNA hsa-miR-449a SNORD46 miRanda miRanda
274 chr1 45242241 45242241 1 + C A rs377221663 45242222 + 45242202 45242242 41 CCGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACT CCGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAAT < 41bp 1 0.088519399822264 1 0.0854395031929016 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242222 chr1:45242241 . . 0 40 hm5C_associated_SNPs_2798 0 0 1 6 45242239 45242261 mRNA hsa-miR-449b SNORD46 miRanda miRanda
275 chr1 45242241 45242241 1 + C A rs377221663 45242223 + 45242203 45242243 41 CGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACTT CGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAATT < 41bp 1 0.085582021237864 1 0.037137359380722 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242223 chr1:45242241 . . 0 39 hm5C_associated_SNPs_2799 0 0 1 6 45242241 45242260 mRNA hsa-miR-199a-5p SNORD46 miRanda miRanda
276 chr1 45242241 45242241 1 + C A rs377221663 45242223 + 45242203 45242243 41 CGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACTT CGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAATT < 41bp 1 0.085582021237864 1 0.037137359380722 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242223 chr1:45242241 . . 0 39 hm5C_associated_SNPs_2799 0 0 1 6 45242234 45242260 mRNA hsa-miR-199b-5p SNORD46 miRanda miRanda
277 chr1 45242241 45242241 1 + C A rs377221663 45242223 + 45242203 45242243 41 CGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACTT CGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAATT < 41bp 1 0.085582021237864 1 0.037137359380722 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242223 chr1:45242241 . . 0 39 hm5C_associated_SNPs_2799 0 0 1 6 45242240 45242261 mRNA hsa-miR-223 SNORD46 miRanda miRanda
278 chr1 45242241 45242241 1 + C A rs377221663 45242223 + 45242203 45242243 41 CGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACTT CGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAATT < 41bp 1 0.085582021237864 1 0.037137359380722 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242223 chr1:45242241 . . 0 39 hm5C_associated_SNPs_2799 0 0 1 6 45242241 45242261 mRNA hsa-miR-34c-5p SNORD46 miRanda miRanda
279 chr1 45242241 45242241 1 + C A rs377221663 45242223 + 45242203 45242243 41 CGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACTT CGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAATT < 41bp 1 0.085582021237864 1 0.037137359380722 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242223 chr1:45242241 . . 0 39 hm5C_associated_SNPs_2799 0 0 1 6 45242239 45242261 mRNA hsa-miR-449a SNORD46 miRanda miRanda
280 chr1 45242241 45242241 1 + C A rs377221663 45242223 + 45242203 45242243 41 CGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACTT CGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAATT < 41bp 1 0.085582021237864 1 0.037137359380722 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242223 chr1:45242241 . . 0 39 hm5C_associated_SNPs_2799 0 0 1 6 45242239 45242261 mRNA hsa-miR-449b SNORD46 miRanda miRanda
281 chr1 45242241 45242241 1 + C A rs377221663 45242225 + 45242205 45242245 41 TCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGT TCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGT < 41bp 1 0.101058980074407 1 0.0359610915184021 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242225 chr1:45242241 . . 0 37 hm5C_associated_SNPs_2800 0 0 1 6 45242241 45242260 mRNA hsa-miR-199a-5p SNORD46 miRanda miRanda
282 chr1 45242241 45242241 1 + C A rs377221663 45242225 + 45242205 45242245 41 TCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGT TCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGT < 41bp 1 0.101058980074407 1 0.0359610915184021 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242225 chr1:45242241 . . 0 37 hm5C_associated_SNPs_2800 0 0 1 6 45242234 45242260 mRNA hsa-miR-199b-5p SNORD46 miRanda miRanda
283 chr1 45242241 45242241 1 + C A rs377221663 45242225 + 45242205 45242245 41 TCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGT TCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGT < 41bp 1 0.101058980074407 1 0.0359610915184021 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242225 chr1:45242241 . . 0 37 hm5C_associated_SNPs_2800 0 0 1 6 45242240 45242261 mRNA hsa-miR-223 SNORD46 miRanda miRanda
284 chr1 45242241 45242241 1 + C A rs377221663 45242225 + 45242205 45242245 41 TCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGT TCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGT < 41bp 1 0.101058980074407 1 0.0359610915184021 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242225 chr1:45242241 . . 0 37 hm5C_associated_SNPs_2800 0 0 1 6 45242241 45242261 mRNA hsa-miR-34c-5p SNORD46 miRanda miRanda
285 chr1 45242241 45242241 1 + C A rs377221663 45242225 + 45242205 45242245 41 TCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGT TCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGT < 41bp 1 0.101058980074407 1 0.0359610915184021 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242225 chr1:45242241 . . 0 37 hm5C_associated_SNPs_2800 0 0 1 6 45242239 45242261 mRNA hsa-miR-449a SNORD46 miRanda miRanda
286 chr1 45242241 45242241 1 + C A rs377221663 45242225 + 45242205 45242245 41 TCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGT TCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGT < 41bp 1 0.101058980074407 1 0.0359610915184021 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242225 chr1:45242241 . . 0 37 hm5C_associated_SNPs_2800 0 0 1 6 45242239 45242261 mRNA hsa-miR-449b SNORD46 miRanda miRanda
287 chr1 45242241 45242241 1 + C A rs377221663 45242229 + 45242209 45242249 41 GGTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGTCATA GGTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGTCATA < 41bp 1 0.204811415488608 1 0.103399157524109 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242229 chr1:45242241 . . 0 33 hm5C_associated_SNPs_2801 0 0 1 6 45242241 45242260 mRNA hsa-miR-199a-5p SNORD46 miRanda miRanda
288 chr1 45242241 45242241 1 + C A rs377221663 45242229 + 45242209 45242249 41 GGTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGTCATA GGTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGTCATA < 41bp 1 0.204811415488608 1 0.103399157524109 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242229 chr1:45242241 . . 0 33 hm5C_associated_SNPs_2801 0 0 1 6 45242234 45242260 mRNA hsa-miR-199b-5p SNORD46 miRanda miRanda
289 chr1 45242241 45242241 1 + C A rs377221663 45242229 + 45242209 45242249 41 GGTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGTCATA GGTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGTCATA < 41bp 1 0.204811415488608 1 0.103399157524109 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242229 chr1:45242241 . . 0 33 hm5C_associated_SNPs_2801 0 0 1 6 45242240 45242261 mRNA hsa-miR-223 SNORD46 miRanda miRanda
290 chr1 45242241 45242241 1 + C A rs377221663 45242229 + 45242209 45242249 41 GGTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGTCATA GGTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGTCATA < 41bp 1 0.204811415488608 1 0.103399157524109 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242229 chr1:45242241 . . 0 33 hm5C_associated_SNPs_2801 0 0 1 6 45242241 45242261 mRNA hsa-miR-34c-5p SNORD46 miRanda miRanda
291 chr1 45242241 45242241 1 + C A rs377221663 45242229 + 45242209 45242249 41 GGTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGTCATA GGTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGTCATA < 41bp 1 0.204811415488608 1 0.103399157524109 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242229 chr1:45242241 . . 0 33 hm5C_associated_SNPs_2801 0 0 1 6 45242239 45242261 mRNA hsa-miR-449a SNORD46 miRanda miRanda
292 chr1 45242241 45242241 1 + C A rs377221663 45242229 + 45242209 45242249 41 GGTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGTCATA GGTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGTCATA < 41bp 1 0.204811415488608 1 0.103399157524109 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242229 chr1:45242241 . . 0 33 hm5C_associated_SNPs_2801 0 0 1 6 45242239 45242261 mRNA hsa-miR-449b SNORD46 miRanda miRanda
293 chr1 45242241 45242241 1 + C A rs377221663 45242230 + 45242210 45242250 41 GTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAG GTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGTCATAG < 41bp 1 0.369775720974019 1 0.338373422622681 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242230 chr1:45242241 . . 0 32 hm5C_associated_SNPs_2802 0 0 1 6 45242241 45242260 mRNA hsa-miR-199a-5p SNORD46 miRanda miRanda
294 chr1 45242241 45242241 1 + C A rs377221663 45242230 + 45242210 45242250 41 GTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAG GTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGTCATAG < 41bp 1 0.369775720974019 1 0.338373422622681 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242230 chr1:45242241 . . 0 32 hm5C_associated_SNPs_2802 0 0 1 6 45242234 45242260 mRNA hsa-miR-199b-5p SNORD46 miRanda miRanda
295 chr1 45242241 45242241 1 + C A rs377221663 45242230 + 45242210 45242250 41 GTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAG GTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGTCATAG < 41bp 1 0.369775720974019 1 0.338373422622681 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242230 chr1:45242241 . . 0 32 hm5C_associated_SNPs_2802 0 0 1 6 45242240 45242261 mRNA hsa-miR-223 SNORD46 miRanda miRanda
296 chr1 45242241 45242241 1 + C A rs377221663 45242230 + 45242210 45242250 41 GTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAG GTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGTCATAG < 41bp 1 0.369775720974019 1 0.338373422622681 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242230 chr1:45242241 . . 0 32 hm5C_associated_SNPs_2802 0 0 1 6 45242241 45242261 mRNA hsa-miR-34c-5p SNORD46 miRanda miRanda
297 chr1 45242241 45242241 1 + C A rs377221663 45242230 + 45242210 45242250 41 GTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAG GTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGTCATAG < 41bp 1 0.369775720974019 1 0.338373422622681 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242230 chr1:45242241 . . 0 32 hm5C_associated_SNPs_2802 0 0 1 6 45242239 45242261 mRNA hsa-miR-449a SNORD46 miRanda miRanda
298 chr1 45242241 45242241 1 + C A rs377221663 45242230 + 45242210 45242250 41 GTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAG GTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGTCATAG < 41bp 1 0.369775720974019 1 0.338373422622681 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242230 chr1:45242241 . . 0 32 hm5C_associated_SNPs_2802 0 0 1 6 45242239 45242261 mRNA hsa-miR-449b SNORD46 miRanda miRanda
299 chr1 45242241 45242241 1 + C A rs377221663 45242235 + 45242215 45242255 41 CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACA CTGTGTGCCACTTGCCAATGCAAGGAATTGTCATAGTTACA < 41bp 1 0.527510869655693 1 0.311053544282913 experiment 0.944978260688613 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242235 chr1:45242241 . . 0 27 hm5C_associated_SNPs_2803 0 0 1 6 45242241 45242260 mRNA hsa-miR-199a-5p SNORD46 miRanda miRanda
300 chr1 45242241 45242241 1 + C A rs377221663 45242235 + 45242215 45242255 41 CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACA CTGTGTGCCACTTGCCAATGCAAGGAATTGTCATAGTTACA < 41bp 1 0.527510869655693 1 0.311053544282913 experiment 0.944978260688613 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242235 chr1:45242241 . . 0 27 hm5C_associated_SNPs_2803 0 0 1 6 45242234 45242260 mRNA hsa-miR-199b-5p SNORD46 miRanda miRanda
301 chr1 45242241 45242241 1 + C A rs377221663 45242235 + 45242215 45242255 41 CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACA CTGTGTGCCACTTGCCAATGCAAGGAATTGTCATAGTTACA < 41bp 1 0.527510869655693 1 0.311053544282913 experiment 0.944978260688613 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242235 chr1:45242241 . . 0 27 hm5C_associated_SNPs_2803 0 0 1 6 45242240 45242261 mRNA hsa-miR-223 SNORD46 miRanda miRanda
302 chr1 45242241 45242241 1 + C A rs377221663 45242235 + 45242215 45242255 41 CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACA CTGTGTGCCACTTGCCAATGCAAGGAATTGTCATAGTTACA < 41bp 1 0.527510869655693 1 0.311053544282913 experiment 0.944978260688613 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242235 chr1:45242241 . . 0 27 hm5C_associated_SNPs_2803 0 0 1 6 45242241 45242261 mRNA hsa-miR-34c-5p SNORD46 miRanda miRanda
303 chr1 45242241 45242241 1 + C A rs377221663 45242235 + 45242215 45242255 41 CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACA CTGTGTGCCACTTGCCAATGCAAGGAATTGTCATAGTTACA < 41bp 1 0.527510869655693 1 0.311053544282913 experiment 0.944978260688613 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242235 chr1:45242241 . . 0 27 hm5C_associated_SNPs_2803 0 0 1 6 45242239 45242261 mRNA hsa-miR-449a SNORD46 miRanda miRanda
304 chr1 45242241 45242241 1 + C A rs377221663 45242235 + 45242215 45242255 41 CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACA CTGTGTGCCACTTGCCAATGCAAGGAATTGTCATAGTTACA < 41bp 1 0.527510869655693 1 0.311053544282913 experiment 0.944978260688613 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242235 chr1:45242241 . . 0 27 hm5C_associated_SNPs_2803 0 0 1 6 45242239 45242261 mRNA hsa-miR-449b SNORD46 miRanda miRanda
305 chr1 45242241 45242241 1 + C A rs377221663 45242246 + 45242226 45242266 41 TTGCCAATGCAAGGACTTGTCATAGTTACACTGACTGTTGC TTGCCAATGCAAGGAATTGTCATAGTTACACTGACTGTTGC < 41bp 1 0.499553424467317 1 0.549023568630219 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242246 chr1:45242241 . . 0 16 hm5C_associated_SNPs_2804 0 0 1 6 45242241 45242260 mRNA hsa-miR-199a-5p SNORD46 miRanda miRanda
306 chr1 45242241 45242241 1 + C A rs377221663 45242246 + 45242226 45242266 41 TTGCCAATGCAAGGACTTGTCATAGTTACACTGACTGTTGC TTGCCAATGCAAGGAATTGTCATAGTTACACTGACTGTTGC < 41bp 1 0.499553424467317 1 0.549023568630219 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242246 chr1:45242241 . . 0 16 hm5C_associated_SNPs_2804 0 0 1 6 45242234 45242260 mRNA hsa-miR-199b-5p SNORD46 miRanda miRanda
307 chr1 45242241 45242241 1 + C A rs377221663 45242246 + 45242226 45242266 41 TTGCCAATGCAAGGACTTGTCATAGTTACACTGACTGTTGC TTGCCAATGCAAGGAATTGTCATAGTTACACTGACTGTTGC < 41bp 1 0.499553424467317 1 0.549023568630219 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242246 chr1:45242241 . . 0 16 hm5C_associated_SNPs_2804 0 0 1 6 45242240 45242261 mRNA hsa-miR-223 SNORD46 miRanda miRanda
308 chr1 45242241 45242241 1 + C A rs377221663 45242246 + 45242226 45242266 41 TTGCCAATGCAAGGACTTGTCATAGTTACACTGACTGTTGC TTGCCAATGCAAGGAATTGTCATAGTTACACTGACTGTTGC < 41bp 1 0.499553424467317 1 0.549023568630219 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242246 chr1:45242241 . . 0 16 hm5C_associated_SNPs_2804 0 0 1 6 45242241 45242261 mRNA hsa-miR-34c-5p SNORD46 miRanda miRanda
309 chr1 45242241 45242241 1 + C A rs377221663 45242246 + 45242226 45242266 41 TTGCCAATGCAAGGACTTGTCATAGTTACACTGACTGTTGC TTGCCAATGCAAGGAATTGTCATAGTTACACTGACTGTTGC < 41bp 1 0.499553424467317 1 0.549023568630219 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242246 chr1:45242241 . . 0 16 hm5C_associated_SNPs_2804 0 0 1 6 45242239 45242261 mRNA hsa-miR-449a SNORD46 miRanda miRanda
310 chr1 45242241 45242241 1 + C A rs377221663 45242246 + 45242226 45242266 41 TTGCCAATGCAAGGACTTGTCATAGTTACACTGACTGTTGC TTGCCAATGCAAGGAATTGTCATAGTTACACTGACTGTTGC < 41bp 1 0.499553424467317 1 0.549023568630219 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242246 chr1:45242241 . . 0 16 hm5C_associated_SNPs_2804 0 0 1 6 45242239 45242261 mRNA hsa-miR-449b SNORD46 miRanda miRanda
311 chr1 45242241 45242241 1 + C A rs377221663 45242260 + 45242240 45242280 41 ACTTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA AATTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA < 41bp 1 0.348112217237537 1 0.0569844245910645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242260 chr1:45242241 . . 0 2 hm5C_associated_SNPs_2805 0 0 1 6 45242241 45242260 mRNA hsa-miR-199a-5p SNORD46 miRanda miRanda
312 chr1 45242241 45242241 1 + C A rs377221663 45242260 + 45242240 45242280 41 ACTTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA AATTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA < 41bp 1 0.348112217237537 1 0.0569844245910645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242260 chr1:45242241 . . 0 2 hm5C_associated_SNPs_2805 0 0 1 6 45242234 45242260 mRNA hsa-miR-199b-5p SNORD46 miRanda miRanda
313 chr1 45242241 45242241 1 + C A rs377221663 45242260 + 45242240 45242280 41 ACTTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA AATTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA < 41bp 1 0.348112217237537 1 0.0569844245910645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242260 chr1:45242241 . . 0 2 hm5C_associated_SNPs_2805 0 0 1 6 45242240 45242261 mRNA hsa-miR-223 SNORD46 miRanda miRanda
314 chr1 45242241 45242241 1 + C A rs377221663 45242260 + 45242240 45242280 41 ACTTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA AATTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA < 41bp 1 0.348112217237537 1 0.0569844245910645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242260 chr1:45242241 . . 0 2 hm5C_associated_SNPs_2805 0 0 1 6 45242241 45242261 mRNA hsa-miR-34c-5p SNORD46 miRanda miRanda
315 chr1 45242241 45242241 1 + C A rs377221663 45242260 + 45242240 45242280 41 ACTTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA AATTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA < 41bp 1 0.348112217237537 1 0.0569844245910645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242260 chr1:45242241 . . 0 2 hm5C_associated_SNPs_2805 0 0 1 6 45242239 45242261 mRNA hsa-miR-449a SNORD46 miRanda miRanda
316 chr1 45242241 45242241 1 + C A rs377221663 45242260 + 45242240 45242280 41 ACTTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA AATTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA < 41bp 1 0.348112217237537 1 0.0569844245910645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242260 chr1:45242241 . . 0 2 hm5C_associated_SNPs_2805 0 0 1 6 45242239 45242261 mRNA hsa-miR-449b SNORD46 miRanda miRanda
317 chr1 45242255 45242255 1 + A G rs541727514 45242235 + 45242215 45242255 41 CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACA CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACG < 41bp 1 0.492052304348857 1 0.309055864810944 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242235 chr1:45242255 . . 0 41 hm5C_associated_SNPs_2806 0 0 1 6 45242241 45242260 mRNA hsa-miR-199a-5p SNORD46 miRanda miRanda
318 chr1 45242255 45242255 1 + A G rs541727514 45242235 + 45242215 45242255 41 CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACA CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACG < 41bp 1 0.492052304348857 1 0.309055864810944 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242235 chr1:45242255 . . 0 41 hm5C_associated_SNPs_2806 0 0 1 6 45242234 45242260 mRNA hsa-miR-199b-5p SNORD46 miRanda miRanda
319 chr1 45242255 45242255 1 + A G rs541727514 45242235 + 45242215 45242255 41 CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACA CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACG < 41bp 1 0.492052304348857 1 0.309055864810944 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242235 chr1:45242255 . . 0 41 hm5C_associated_SNPs_2806 0 0 1 6 45242240 45242261 mRNA hsa-miR-223 SNORD46 miRanda miRanda
320 chr1 45242255 45242255 1 + A G rs541727514 45242235 + 45242215 45242255 41 CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACA CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACG < 41bp 1 0.492052304348857 1 0.309055864810944 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242235 chr1:45242255 . . 0 41 hm5C_associated_SNPs_2806 0 0 1 6 45242241 45242261 mRNA hsa-miR-34c-5p SNORD46 miRanda miRanda
321 chr1 45242255 45242255 1 + A G rs541727514 45242235 + 45242215 45242255 41 CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACA CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACG < 41bp 1 0.492052304348857 1 0.309055864810944 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242235 chr1:45242255 . . 0 41 hm5C_associated_SNPs_2806 0 0 1 6 45242239 45242261 mRNA hsa-miR-449a SNORD46 miRanda miRanda
322 chr1 45242255 45242255 1 + A G rs541727514 45242235 + 45242215 45242255 41 CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACA CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACG < 41bp 1 0.492052304348857 1 0.309055864810944 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242235 chr1:45242255 . . 0 41 hm5C_associated_SNPs_2806 0 0 1 6 45242239 45242261 mRNA hsa-miR-449b SNORD46 miRanda miRanda
323 chr1 45242255 45242255 1 + A G rs541727514 45242241 + 45242221 45242261 41 GCCACTTGCCAATGCAAGGACTTGTCATAGTTACACTGACT GCCACTTGCCAATGCAAGGACTTGTCATAGTTACGCTGACT < 41bp 1 0.155867480017086 1 0.19263020157814 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242241 chr1:45242255 . . 0 35 hm5C_associated_SNPs_2807 0 0 1 6 45242241 45242260 mRNA hsa-miR-199a-5p SNORD46 miRanda miRanda
324 chr1 45242255 45242255 1 + A G rs541727514 45242241 + 45242221 45242261 41 GCCACTTGCCAATGCAAGGACTTGTCATAGTTACACTGACT GCCACTTGCCAATGCAAGGACTTGTCATAGTTACGCTGACT < 41bp 1 0.155867480017086 1 0.19263020157814 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242241 chr1:45242255 . . 0 35 hm5C_associated_SNPs_2807 0 0 1 6 45242234 45242260 mRNA hsa-miR-199b-5p SNORD46 miRanda miRanda
325 chr1 45242255 45242255 1 + A G rs541727514 45242241 + 45242221 45242261 41 GCCACTTGCCAATGCAAGGACTTGTCATAGTTACACTGACT GCCACTTGCCAATGCAAGGACTTGTCATAGTTACGCTGACT < 41bp 1 0.155867480017086 1 0.19263020157814 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242241 chr1:45242255 . . 0 35 hm5C_associated_SNPs_2807 0 0 1 6 45242240 45242261 mRNA hsa-miR-223 SNORD46 miRanda miRanda
326 chr1 45242255 45242255 1 + A G rs541727514 45242241 + 45242221 45242261 41 GCCACTTGCCAATGCAAGGACTTGTCATAGTTACACTGACT GCCACTTGCCAATGCAAGGACTTGTCATAGTTACGCTGACT < 41bp 1 0.155867480017086 1 0.19263020157814 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242241 chr1:45242255 . . 0 35 hm5C_associated_SNPs_2807 0 0 1 6 45242241 45242261 mRNA hsa-miR-34c-5p SNORD46 miRanda miRanda
327 chr1 45242255 45242255 1 + A G rs541727514 45242241 + 45242221 45242261 41 GCCACTTGCCAATGCAAGGACTTGTCATAGTTACACTGACT GCCACTTGCCAATGCAAGGACTTGTCATAGTTACGCTGACT < 41bp 1 0.155867480017086 1 0.19263020157814 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242241 chr1:45242255 . . 0 35 hm5C_associated_SNPs_2807 0 0 1 6 45242239 45242261 mRNA hsa-miR-449a SNORD46 miRanda miRanda
328 chr1 45242255 45242255 1 + A G rs541727514 45242241 + 45242221 45242261 41 GCCACTTGCCAATGCAAGGACTTGTCATAGTTACACTGACT GCCACTTGCCAATGCAAGGACTTGTCATAGTTACGCTGACT < 41bp 1 0.155867480017086 1 0.19263020157814 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242241 chr1:45242255 . . 0 35 hm5C_associated_SNPs_2807 0 0 1 6 45242239 45242261 mRNA hsa-miR-449b SNORD46 miRanda miRanda
329 chr1 45242255 45242255 1 + A G rs541727514 45242246 + 45242226 45242266 41 TTGCCAATGCAAGGACTTGTCATAGTTACACTGACTGTTGC TTGCCAATGCAAGGACTTGTCATAGTTACGCTGACTGTTGC < 41bp 1 0.472008490944456 1 0.498896896839142 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242246 chr1:45242255 . . 0 30 hm5C_associated_SNPs_2808 0 0 1 6 45242241 45242260 mRNA hsa-miR-199a-5p SNORD46 miRanda miRanda
330 chr1 45242255 45242255 1 + A G rs541727514 45242246 + 45242226 45242266 41 TTGCCAATGCAAGGACTTGTCATAGTTACACTGACTGTTGC TTGCCAATGCAAGGACTTGTCATAGTTACGCTGACTGTTGC < 41bp 1 0.472008490944456 1 0.498896896839142 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242246 chr1:45242255 . . 0 30 hm5C_associated_SNPs_2808 0 0 1 6 45242234 45242260 mRNA hsa-miR-199b-5p SNORD46 miRanda miRanda
331 chr1 45242255 45242255 1 + A G rs541727514 45242246 + 45242226 45242266 41 TTGCCAATGCAAGGACTTGTCATAGTTACACTGACTGTTGC TTGCCAATGCAAGGACTTGTCATAGTTACGCTGACTGTTGC < 41bp 1 0.472008490944456 1 0.498896896839142 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242246 chr1:45242255 . . 0 30 hm5C_associated_SNPs_2808 0 0 1 6 45242240 45242261 mRNA hsa-miR-223 SNORD46 miRanda miRanda
332 chr1 45242255 45242255 1 + A G rs541727514 45242246 + 45242226 45242266 41 TTGCCAATGCAAGGACTTGTCATAGTTACACTGACTGTTGC TTGCCAATGCAAGGACTTGTCATAGTTACGCTGACTGTTGC < 41bp 1 0.472008490944456 1 0.498896896839142 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242246 chr1:45242255 . . 0 30 hm5C_associated_SNPs_2808 0 0 1 6 45242241 45242261 mRNA hsa-miR-34c-5p SNORD46 miRanda miRanda
333 chr1 45242255 45242255 1 + A G rs541727514 45242246 + 45242226 45242266 41 TTGCCAATGCAAGGACTTGTCATAGTTACACTGACTGTTGC TTGCCAATGCAAGGACTTGTCATAGTTACGCTGACTGTTGC < 41bp 1 0.472008490944456 1 0.498896896839142 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242246 chr1:45242255 . . 0 30 hm5C_associated_SNPs_2808 0 0 1 6 45242239 45242261 mRNA hsa-miR-449a SNORD46 miRanda miRanda
334 chr1 45242255 45242255 1 + A G rs541727514 45242246 + 45242226 45242266 41 TTGCCAATGCAAGGACTTGTCATAGTTACACTGACTGTTGC TTGCCAATGCAAGGACTTGTCATAGTTACGCTGACTGTTGC < 41bp 1 0.472008490944456 1 0.498896896839142 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242246 chr1:45242255 . . 0 30 hm5C_associated_SNPs_2808 0 0 1 6 45242239 45242261 mRNA hsa-miR-449b SNORD46 miRanda miRanda
335 chr1 45242255 45242255 1 + A G rs541727514 45242260 + 45242240 45242280 41 ACTTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA ACTTGTCATAGTTACGCTGACTGTTGCCTCCTCCCGGCCCA < 41bp 1 0.424753005743334 1 0.0314220786094666 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242260 chr1:45242255 . . 0 16 hm5C_associated_SNPs_2809 0 0 1 6 45242241 45242260 mRNA hsa-miR-199a-5p SNORD46 miRanda miRanda
336 chr1 45242255 45242255 1 + A G rs541727514 45242260 + 45242240 45242280 41 ACTTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA ACTTGTCATAGTTACGCTGACTGTTGCCTCCTCCCGGCCCA < 41bp 1 0.424753005743334 1 0.0314220786094666 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242260 chr1:45242255 . . 0 16 hm5C_associated_SNPs_2809 0 0 1 6 45242234 45242260 mRNA hsa-miR-199b-5p SNORD46 miRanda miRanda
337 chr1 45242255 45242255 1 + A G rs541727514 45242260 + 45242240 45242280 41 ACTTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA ACTTGTCATAGTTACGCTGACTGTTGCCTCCTCCCGGCCCA < 41bp 1 0.424753005743334 1 0.0314220786094666 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242260 chr1:45242255 . . 0 16 hm5C_associated_SNPs_2809 0 0 1 6 45242240 45242261 mRNA hsa-miR-223 SNORD46 miRanda miRanda
338 chr1 45242255 45242255 1 + A G rs541727514 45242260 + 45242240 45242280 41 ACTTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA ACTTGTCATAGTTACGCTGACTGTTGCCTCCTCCCGGCCCA < 41bp 1 0.424753005743334 1 0.0314220786094666 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242260 chr1:45242255 . . 0 16 hm5C_associated_SNPs_2809 0 0 1 6 45242241 45242261 mRNA hsa-miR-34c-5p SNORD46 miRanda miRanda
339 chr1 45242255 45242255 1 + A G rs541727514 45242260 + 45242240 45242280 41 ACTTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA ACTTGTCATAGTTACGCTGACTGTTGCCTCCTCCCGGCCCA < 41bp 1 0.424753005743334 1 0.0314220786094666 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242260 chr1:45242255 . . 0 16 hm5C_associated_SNPs_2809 0 0 1 6 45242239 45242261 mRNA hsa-miR-449a SNORD46 miRanda miRanda
340 chr1 45242255 45242255 1 + A G rs541727514 45242260 + 45242240 45242280 41 ACTTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA ACTTGTCATAGTTACGCTGACTGTTGCCTCCTCCCGGCCCA < 41bp 1 0.424753005743334 1 0.0314220786094666 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242260 chr1:45242255 . . 0 16 hm5C_associated_SNPs_2809 0 0 1 6 45242239 45242261 mRNA hsa-miR-449b SNORD46 miRanda miRanda
341 chr1 45243546 45243546 1 + A G rs76870991 45243531 + 45243511 45243551 41 GCCTTCTCGTGATGAAAACTCTGTCCAGTTCTGCTACTGAA GCCTTCTCGTGATGAAAACTCTGTCCAGTTCTGCTGCTGAA < 41bp 1 0.245266957575151 1 0.148018598556519 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD38A ENSG00000202031 ncRNA_exonic Human snoRNA chr1:45243531 chr1:45243546 . . 0 36 hm5C_associated_SNPs_2810 0 0 1 1 45243529 45243550 mRNA hsa-miR-152 SNORD38A miRanda miRanda
342 chr1 45243546 45243546 1 + A G rs76870991 45243544 + 45243524 45243564 41 GAAAACTCTGTCCAGTTCTGCTACTGAAGGGAGAGAGATGA GAAAACTCTGTCCAGTTCTGCTGCTGAAGGGAGAGAGATGA < 41bp 1 0.277614988169867 1 0.297598958015442 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD38A ENSG00000202031 ncRNA_exonic Human snoRNA chr1:45243544 chr1:45243546 . . 0 23 hm5C_associated_SNPs_2811 0 0 1 1 45243529 45243550 mRNA hsa-miR-152 SNORD38A miRanda miRanda
343 chr1 45243546 45243546 1 + A G rs76870991 45243547 + 45243527 45243567 41 AACTCTGTCCAGTTCTGCTACTGAAGGGAGAGAGATGAGAG AACTCTGTCCAGTTCTGCTGCTGAAGGGAGAGAGATGAGAG < 41bp 1 0.615077118069518 1 0.472555100917816 experiment 0.769845763860963 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD38A ENSG00000202031 ncRNA_exonic Human snoRNA chr1:45243547 chr1:45243546 . . 0 20 hm5C_associated_SNPs_2812 0 0 1 1 45243529 45243550 mRNA hsa-miR-152 SNORD38A miRanda miRanda
344 chr1 45809407 45809407 1 + A G rs60789611 45809404 + 45809384 45809424 41 CACCTTGCTCTCAGGTGGAACAGAGGTATTTTGGGTCTCTC CACCTTGCTCTCAGGTGGAACAGGGGTATTTTGGGTCTCTC < 41bp 1 0.738222939975077 1 0.906128227710724 experiment 0.523554120049847 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TOE1 ENSG00000132773 UTR3 Human protein_coding chr1:45809404 chr1:45809407 . . 0 24 hm5C_associated_SNPs_2822 0 0 0 1 45809392 45809413 mRNA hsa-miR-875-5p TOE1 miRanda miRanda
345 chr1 93306317 93306317 1 + G A rs10874744 93306297 + 93306277 93306317 41 TGCAAACTCGATCACTAGCTCTGCGTGATGTGGCAGAAGCG TGCAAACTCGATCACTAGCTCTGCGTGATGTGGCAGAAGCA < 41bp 1 0.395552631897164 1 0.613755404949188 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA66 ENSG00000207523 ncRNA_exonic Human snoRNA chr1:93306297 chr1:93306317 . . 0 41 hm5C_associated_SNPs_2970 1 0 1 1 93306311 93306332 mRNA hsa-miR-490-3p SNORA66 miRanda miRanda
346 chr1 93307423 93307423 1 + A G rs11540833 93307419 + 93307399 93307439 41 CAGGAGCGGGCTGCTGAGAGCTAAACCCAGCAATTTTCTAT CAGGAGCGGGCTGCTGAGAGCTAAGCCCAGCAATTTTCTAT < 41bp 1 0.329967296720746 1 0.175529181957245 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL5 ENSG00000122406 UTR3 Human protein_coding chr1:93307419 chr1:93307423 . . 0 25 hm5C_associated_SNPs_2971 0 0 1 4 93307423 93307442 mRNA hsa-miR-376a RPL5 miRanda miRanda
347 chr1 93307423 93307423 1 + A G rs11540833 93307419 + 93307399 93307439 41 CAGGAGCGGGCTGCTGAGAGCTAAACCCAGCAATTTTCTAT CAGGAGCGGGCTGCTGAGAGCTAAGCCCAGCAATTTTCTAT < 41bp 1 0.329967296720746 1 0.175529181957245 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL5 ENSG00000122406 UTR3 Human protein_coding chr1:93307419 chr1:93307423 . . 0 25 hm5C_associated_SNPs_2971 0 0 1 4 93307422 93307442 mRNA hsa-miR-376a RPL5 miRanda miRanda
348 chr1 93307423 93307423 1 + A G rs11540833 93307419 + 93307399 93307439 41 CAGGAGCGGGCTGCTGAGAGCTAAACCCAGCAATTTTCTAT CAGGAGCGGGCTGCTGAGAGCTAAGCCCAGCAATTTTCTAT < 41bp 1 0.329967296720746 1 0.175529181957245 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL5 ENSG00000122406 UTR3 Human protein_coding chr1:93307419 chr1:93307423 . . 0 25 hm5C_associated_SNPs_2971 0 0 1 4 93307423 93307442 mRNA hsa-miR-376b RPL5 miRanda miRanda
349 chr1 93307423 93307423 1 + A G rs11540833 93307419 + 93307399 93307439 41 CAGGAGCGGGCTGCTGAGAGCTAAACCCAGCAATTTTCTAT CAGGAGCGGGCTGCTGAGAGCTAAGCCCAGCAATTTTCTAT < 41bp 1 0.329967296720746 1 0.175529181957245 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL5 ENSG00000122406 UTR3 Human protein_coding chr1:93307419 chr1:93307423 . . 0 25 hm5C_associated_SNPs_2971 0 0 1 4 93307421 93307442 mRNA hsa-miR-376b RPL5 miRanda miRanda
350 chr1 109325301 109325301 1 + A G rs201792987 109325284 + 109325264 109325304 41 TTGACAGGGAAATTCCCAAGCTTATGAAAGAAATTTCATCA TTGACAGGGAAATTCCCAAGCTTATGAAAGAAATTTCGTCA < 41bp 1 0.199584564891104 1 0.0809610784053802 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109325284 chr1:109325301 synonymous SNV . 0 38 hm5C_associated_SNPs_2983 0 0 1 1 109325283 109325304 mRNA hsa-miR-539 STXBP3 miRanda miRanda
351 chr1 110210740 110210740 1 + G A rs201905887 110210743 + 110210723 110210763 41 ACAGCAACCAGCACCATGCCCATGACACTGGGGTACTGGAA ACAGCAACCAGCACCATACCCATGACACTGGGGTACTGGAA < 41bp 1 0.722795380766819 1 0.166840106248856 experiment 0.554409238466361 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSTM2 ENSG00000213366 CDS Human protein_coding chr1:110210743 chr1:110210740 nonsynonymous SNV 0.035 2 18 hm5C_associated_SNPs_3013 0 0 1 2 110210732 110210754 mRNA hsa-miR-199a-5p GSTM2 miRanda miRanda
352 chr1 110210740 110210740 1 + G A rs201905887 110210743 + 110210723 110210763 41 ACAGCAACCAGCACCATGCCCATGACACTGGGGTACTGGAA ACAGCAACCAGCACCATACCCATGACACTGGGGTACTGGAA < 41bp 1 0.722795380766819 1 0.166840106248856 experiment 0.554409238466361 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSTM2 ENSG00000213366 CDS Human protein_coding chr1:110210743 chr1:110210740 nonsynonymous SNV 0.035 2 18 hm5C_associated_SNPs_3013 0 0 1 2 110210732 110210754 mRNA hsa-miR-199b-5p GSTM2 miRanda miRanda
353 chr1 145543545 145543545 1 + T C rs12402234 145543541 + 145543521 145543561 41 ACAGTAAAGGCAGTTGGATTCTCATAGACAACTGGGTAACT ACAGTAAAGGCAGTTGGATTCTCACAGACAACTGGGTAACT < 41bp 1 0.0945966350445986 1 0.299053192138672 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ITGA10 ENSG00000143127 UTR3 Human protein_coding chr1:145543541 chr1:145543545 . . 0 25 hm5C_associated_SNPs_3060 0 0 0 1 145543532 145543556 mRNA hsa-miR-199b-5p ITGA10 miRanda miRanda
354 chr1 156202173 156202173 1 + A C rs1052053 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATGACACAGCCAATCTATGACAAGTTTATA < 41bp 1 0.0356001774427484 1 0.14225235581398 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202173 nonsynonymous SNV 0.812 0 22 hm5C_associated_SNPs_3167 0 1 0 3 156202163 156202183 mRNA hsa-miR-376c PMF1 miRanda miRanda
355 chr1 156202173 156202173 1 + A C rs1052053 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATGACACAGCCAATCTATGACAAGTTTATA < 41bp 1 0.0356001774427484 1 0.14225235581398 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202173 nonsynonymous SNV 0.812 0 22 hm5C_associated_SNPs_3167 0 1 0 3 156202163 156202183 mRNA hsa-miR-376a PMF1 miRanda miRanda
356 chr1 156202173 156202173 1 + A C rs1052053 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATGACACAGCCAATCTATGACAAGTTTATA < 41bp 1 0.0356001774427484 1 0.14225235581398 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202173 nonsynonymous SNV 0.812 0 22 hm5C_associated_SNPs_3167 0 1 0 3 156202162 156202183 mRNA hsa-miR-376b PMF1 miRanda miRanda
357 chr1 162493699 162493699 1 + G A rs545024877 162493709 + 162493689 162493729 41 GTGTCCCTGAGTAGAGGATGCTGCTATGCGTGAGTTCATGG GTGTCCCTGAATAGAGGATGCTGCTATGCGTGAGTTCATGG < 41bp 1 0.408422667664175 1 0.0371389389038086 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UHMK1 ENSG00000152332 UTR3 Human protein_coding chr1:162493709 chr1:162493699 . . 0 11 hm5C_associated_SNPs_3232 0 0 1 6 162493693 162493714 mRNA hsa-miR-15a UHMK1 miRanda miRanda
358 chr1 162493699 162493699 1 + G A rs545024877 162493709 + 162493689 162493729 41 GTGTCCCTGAGTAGAGGATGCTGCTATGCGTGAGTTCATGG GTGTCCCTGAATAGAGGATGCTGCTATGCGTGAGTTCATGG < 41bp 1 0.408422667664175 1 0.0371389389038086 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UHMK1 ENSG00000152332 UTR3 Human protein_coding chr1:162493709 chr1:162493699 . . 0 11 hm5C_associated_SNPs_3232 0 0 1 6 162493692 162493714 mRNA hsa-miR-16 UHMK1 miRanda miRanda
359 chr1 162493699 162493699 1 + G A rs545024877 162493709 + 162493689 162493729 41 GTGTCCCTGAGTAGAGGATGCTGCTATGCGTGAGTTCATGG GTGTCCCTGAATAGAGGATGCTGCTATGCGTGAGTTCATGG < 41bp 1 0.408422667664175 1 0.0371389389038086 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UHMK1 ENSG00000152332 UTR3 Human protein_coding chr1:162493709 chr1:162493699 . . 0 11 hm5C_associated_SNPs_3232 0 0 1 6 162493692 162493714 mRNA hsa-miR-15b UHMK1 miRanda miRanda
360 chr1 162493699 162493699 1 + G A rs545024877 162493709 + 162493689 162493729 41 GTGTCCCTGAGTAGAGGATGCTGCTATGCGTGAGTTCATGG GTGTCCCTGAATAGAGGATGCTGCTATGCGTGAGTTCATGG < 41bp 1 0.408422667664175 1 0.0371389389038086 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UHMK1 ENSG00000152332 UTR3 Human protein_coding chr1:162493709 chr1:162493699 . . 0 11 hm5C_associated_SNPs_3232 0 0 1 6 162493694 162493714 mRNA hsa-miR-195 UHMK1 miRanda miRanda
361 chr1 162493699 162493699 1 + G A rs545024877 162493709 + 162493689 162493729 41 GTGTCCCTGAGTAGAGGATGCTGCTATGCGTGAGTTCATGG GTGTCCCTGAATAGAGGATGCTGCTATGCGTGAGTTCATGG < 41bp 1 0.408422667664175 1 0.0371389389038086 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UHMK1 ENSG00000152332 UTR3 Human protein_coding chr1:162493709 chr1:162493699 . . 0 11 hm5C_associated_SNPs_3232 0 0 1 6 162493693 162493714 mRNA hsa-miR-424 UHMK1 miRanda miRanda
362 chr1 162493699 162493699 1 + G A rs545024877 162493709 + 162493689 162493729 41 GTGTCCCTGAGTAGAGGATGCTGCTATGCGTGAGTTCATGG GTGTCCCTGAATAGAGGATGCTGCTATGCGTGAGTTCATGG < 41bp 1 0.408422667664175 1 0.0371389389038086 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UHMK1 ENSG00000152332 UTR3 Human protein_coding chr1:162493709 chr1:162493699 . . 0 11 hm5C_associated_SNPs_3232 0 0 1 6 162493694 162493714 mRNA hsa-miR-497 UHMK1 miRanda miRanda
363 chr1 172579544 172579544 1 + G A rs189837722 172579557 + 172579537 172579577 41 AAAAGTAGATGGGATTGTGTCAATCTTGGTTAATGAGCTAC AAAAGTAAATGGGATTGTGTCAATCTTGGTTAATGAGCTAC < 41bp 1 0.110553129325265 1 0.177890688180923 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SUCO ENSG00000094975 UTR3 Human protein_coding chr1:172579557 chr1:172579544 . . 0 8 hm5C_associated_SNPs_3251 0 0 1 1 172579540 172579561 mRNA hsa-miR-363 C1orf9 miRanda miRanda
364 chr1 181059835 181059835 1 + A G rs78185242 181059844 + 181059824 181059864 41 GTTTTGTAGATATGGTGACTCCAGTCTTTGTTGTATAAAGG GTTTTGTAGATGTGGTGACTCCAGTCTTTGTTGTATAAAGG < 41bp 1 0.17430966330818 1 0.578845858573914 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IER5 ENSG00000162783 UTR3 Human protein_coding chr1:181059844 chr1:181059835 . . 0 12 hm5C_associated_SNPs_3282 0 0 1 1 181059833 181059856 mRNA hsa-miR-495 IER5 miRanda miRanda
365 chr1 181059835 181059835 1 + A G rs78185242 181059845 + 181059825 181059865 41 TTTTGTAGATATGGTGACTCCAGTCTTTGTTGTATAAAGGT TTTTGTAGATGTGGTGACTCCAGTCTTTGTTGTATAAAGGT < 41bp 1 0.161720817059368 1 0.447928428649902 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IER5 ENSG00000162783 UTR3 Human protein_coding chr1:181059845 chr1:181059835 . . 0 11 hm5C_associated_SNPs_3283 0 0 1 1 181059833 181059856 mRNA hsa-miR-495 IER5 miRanda miRanda
366 chr1 198288709 198288709 1 + A G rs6679100 198288708 + 198288688 198288728 41 TGAAAGTATTTTGTGCAAGTCATACCTCCCCATTTATGTCT TGAAAGTATTTTGTGCAAGTCGTACCTCCCCATTTATGTCT < 41bp 1 0.0874653920381939 1 0.0217593610286713 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NEK7 ENSG00000151414 UTR3 Human protein_coding chr1:198288708 chr1:198288709 . . 0 22 hm5C_associated_SNPs_3300 0 0 1 1 198288699 198288716 mRNA hsa-miR-202 NEK7 miRanda miRanda
367 chr1 201985659 201985659 1 + A C rs543591690 201985664 + 201985644 201985684 41 AAAGGAAAAAAAAAAAAAAACAAAACAAAATGGAGATGAGT AAAGGAAAAAAAAAACAAAACAAAACAAAATGGAGATGAGT < 41bp 1 0.450894420418632 1 0.541770040988922 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control ELF3 ENSG00000163435 UTR3 Human protein_coding chr1:201985664 chr1:201985659 . . 0 16 hm5C_associated_SNPs_3327 0 0 0 1 201985656 201985679 mRNA hsa-miR-136 ELF3 miRanda miRanda
368 chr1 207967325 207967325 1 + A G rs2724390 207967310 + 207967290 207967330 41 TTTTTGTTCAAAGATTAATGCCAACTCTTAAGATTATTCTT TTTTTGTTCAAAGATTAATGCCAACTCTTAAGATTGTTCTT < 41bp 1 0.0714736437141878 1 0.0860656201839447 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CD46 ENSG00000117335 UTR3 Human protein_coding chr1:207967310 chr1:207967325 . . 0 36 hm5C_associated_SNPs_3383 1 0 1 1 207967312 207967332 mRNA hsa-miR-186 CD46 miRanda miRanda
369 chr1 207967325 207967325 1 + A G rs2724390 207967311 + 207967291 207967331 41 TTTTGTTCAAAGATTAATGCCAACTCTTAAGATTATTCTTT TTTTGTTCAAAGATTAATGCCAACTCTTAAGATTGTTCTTT < 41bp 1 0.198013874844999 1 0.0465032160282135 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CD46 ENSG00000117335 UTR3 Human protein_coding chr1:207967311 chr1:207967325 . . 0 35 hm5C_associated_SNPs_3384 1 0 1 1 207967312 207967332 mRNA hsa-miR-186 CD46 miRanda miRanda
370 chr1 207967326 207967326 1 + T C rs146017739 207967310 + 207967290 207967330 41 TTTTTGTTCAAAGATTAATGCCAACTCTTAAGATTATTCTT TTTTTGTTCAAAGATTAATGCCAACTCTTAAGATTACTCTT < 41bp 1 0.0776860403817698 1 0.0436117947101593 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CD46 ENSG00000117335 UTR3 Human protein_coding chr1:207967310 chr1:207967326 . . 0 37 hm5C_associated_SNPs_3385 0 0 1 2 207967312 207967332 mRNA hsa-miR-186 CD46 miRanda miRanda
371 chr1 207967326 207967326 1 + T C rs146017739 207967310 + 207967290 207967330 41 TTTTTGTTCAAAGATTAATGCCAACTCTTAAGATTATTCTT TTTTTGTTCAAAGATTAATGCCAACTCTTAAGATTACTCTT < 41bp 1 0.0776860403817698 1 0.0436117947101593 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CD46 ENSG00000117335 UTR3 Human protein_coding chr1:207967310 chr1:207967326 . . 0 37 hm5C_associated_SNPs_3385 0 0 1 2 207967326 207967349 mRNA hsa-miR-181d CD46 miRanda miRanda
372 chr1 207967326 207967326 1 + T C rs146017739 207967311 + 207967291 207967331 41 TTTTGTTCAAAGATTAATGCCAACTCTTAAGATTATTCTTT TTTTGTTCAAAGATTAATGCCAACTCTTAAGATTACTCTTT < 41bp 1 0.232414088503121 1 0.0459014773368835 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CD46 ENSG00000117335 UTR3 Human protein_coding chr1:207967311 chr1:207967326 . . 0 36 hm5C_associated_SNPs_3386 0 0 1 2 207967312 207967332 mRNA hsa-miR-186 CD46 miRanda miRanda
373 chr1 207967326 207967326 1 + T C rs146017739 207967311 + 207967291 207967331 41 TTTTGTTCAAAGATTAATGCCAACTCTTAAGATTATTCTTT TTTTGTTCAAAGATTAATGCCAACTCTTAAGATTACTCTTT < 41bp 1 0.232414088503121 1 0.0459014773368835 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CD46 ENSG00000117335 UTR3 Human protein_coding chr1:207967311 chr1:207967326 . . 0 36 hm5C_associated_SNPs_3386 0 0 1 2 207967326 207967349 mRNA hsa-miR-181d CD46 miRanda miRanda
374 chr1 210847740 210847740 1 + A C rs4366378 210847733 + 210847713 210847753 41 ACGGACTAATGCTGTTGGGCCCAGGCCAGTCCTTGTTGCTG ACGGACTAATGCTGTTGGGCCCAGGCCCGTCCTTGTTGCTG < 41bp 1 0.296545997643921 1 0.216660737991333 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HHAT ENSG00000054392 UTR3 Human protein_coding chr1:210847733 chr1:210847740 . . 0 28 hm5C_associated_SNPs_3387 0 1 0 2 210847722 210847743 mRNA hsa-miR-193a-3p HHAT miRanda miRanda
375 chr1 210847740 210847740 1 + A C rs4366378 210847733 + 210847713 210847753 41 ACGGACTAATGCTGTTGGGCCCAGGCCAGTCCTTGTTGCTG ACGGACTAATGCTGTTGGGCCCAGGCCCGTCCTTGTTGCTG < 41bp 1 0.296545997643921 1 0.216660737991333 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HHAT ENSG00000054392 UTR3 Human protein_coding chr1:210847733 chr1:210847740 . . 0 28 hm5C_associated_SNPs_3387 0 1 0 2 210847722 210847743 mRNA hsa-miR-193b HHAT miRanda miRanda
376 chr1 212793050 212793050 1 + A G rs1803173 212793049 + 212793029 212793069 41 GAGGGCCTGCAGTGATTCAGCAGGCCCTTCCCATTCTGCCC GAGGGCCTGCAGTGATTCAGCGGGCCCTTCCCATTCTGCCC < 41bp 1 0.785468803044143 1 0.934838831424713 experiment 0.429062393911714 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ATF3 ENSG00000162772 UTR3 Human protein_coding chr1:212793049 chr1:212793050 . . 0 22 hm5C_associated_SNPs_3390 0 0 1 1 212793032 212793053 mRNA hsa-miR-370 ATF3 miRanda miRanda
377 chr1 212793050 212793050 1 + A G rs1803173 212793053 + 212793033 212793073 41 GCCTGCAGTGATTCAGCAGGCCCTTCCCATTCTGCCCCAGA GCCTGCAGTGATTCAGCGGGCCCTTCCCATTCTGCCCCAGA < 41bp 1 0.104626002778369 1 0.0561382174491882 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ATF3 ENSG00000162772 UTR3 Human protein_coding chr1:212793053 chr1:212793050 . . 0 18 hm5C_associated_SNPs_3391 0 0 1 1 212793032 212793053 mRNA hsa-miR-370 ATF3 miRanda miRanda
378 chr1 212793050 212793050 1 + A G rs1803173 212793054 + 212793034 212793074 41 CCTGCAGTGATTCAGCAGGCCCTTCCCATTCTGCCCCAGAG CCTGCAGTGATTCAGCGGGCCCTTCCCATTCTGCCCCAGAG < 41bp 1 0.0277962522231986 1 0.0585522651672363 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ATF3 ENSG00000162772 UTR3 Human protein_coding chr1:212793054 chr1:212793050 . . 0 17 hm5C_associated_SNPs_3392 0 0 1 1 212793032 212793053 mRNA hsa-miR-370 ATF3 miRanda miRanda
379 chr1 212793050 212793050 1 + A G rs1803173 212793055 + 212793035 212793075 41 CTGCAGTGATTCAGCAGGCCCTTCCCATTCTGCCCCAGAGT CTGCAGTGATTCAGCGGGCCCTTCCCATTCTGCCCCAGAGT < 41bp 1 0.132416218209266 1 0.0498566627502441 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ATF3 ENSG00000162772 UTR3 Human protein_coding chr1:212793055 chr1:212793050 . . 0 16 hm5C_associated_SNPs_3393 0 0 1 1 212793032 212793053 mRNA hsa-miR-370 ATF3 miRanda miRanda
380 chr1 212793050 212793050 1 + A G rs1803173 212793060 + 212793040 212793080 41 GTGATTCAGCAGGCCCTTCCCATTCTGCCCCAGAGTGGGTC GTGATTCAGCGGGCCCTTCCCATTCTGCCCCAGAGTGGGTC < 41bp 1 0.204848296698618 1 0.138015478849411 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ATF3 ENSG00000162772 UTR3 Human protein_coding chr1:212793060 chr1:212793050 . . 0 11 hm5C_associated_SNPs_3394 0 0 1 1 212793032 212793053 mRNA hsa-miR-370 ATF3 miRanda miRanda
381 chr1 212793832 212793832 1 + G A rs569236636 212793848 + 212793828 212793868 41 GGGTGGTACCCAGGCTTTAGCATTATTGGATGTCAATAGCA GGGTAGTACCCAGGCTTTAGCATTATTGGATGTCAATAGCA < 41bp 1 0.413198957144825 1 0.17647910118103 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF3 ENSG00000162772 UTR3 Human protein_coding chr1:212793848 chr1:212793832 . . 0 5 hm5C_associated_SNPs_3395 0 0 1 1 212793831 212793853 mRNA hsa-miR-155 ATF3 miRanda miRanda
382 chr1 212793849 212793849 1 + A G rs1126700 212793848 + 212793828 212793868 41 GGGTGGTACCCAGGCTTTAGCATTATTGGATGTCAATAGCA GGGTGGTACCCAGGCTTTAGCGTTATTGGATGTCAATAGCA < 41bp 1 0.468348215329628 1 0.410795569419861 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF3 ENSG00000162772 UTR3 Human protein_coding chr1:212793848 chr1:212793849 . . 0 22 hm5C_associated_SNPs_3396 0 0 1 1 212793831 212793853 mRNA hsa-miR-155 ATF3 miRanda miRanda
383 chr1 225977945 225977945 1 + T C rs191367978 225977934 + 225977914 225977954 41 AAGGTGTTAGGTGTGACTGTCACAACTGTTATGTTTTCCAG AAGGTGTTAGGTGTGACTGTCACAACTGTTACGTTTTCCAG < 41bp 1 0.741111756582722 1 0.705687761306763 experiment 0.517776486834556 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRP9 ENSG00000143742 UTR3 Human protein_coding chr1:225977934 chr1:225977945 . . 0 32 hm5C_associated_SNPs_3442 0 0 1 1 225977925 225977949 mRNA hsa-miR-495 SRP9 miRanda miRanda
384 chr1 228286628 228286628 1 + C G rs187703170 228286618 + 228286598 228286638 41 GACCCACAGCCCCTCGGGAGCACCCCACCTCTGTGTGTGAT GACCCACAGCCCCTCGGGAGCACCCCACCTGTGTGTGTGAT < 41bp 1 0.311708779186932 1 0.439624518156052 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARF1 ENSG00000143761 UTR3 Human protein_coding chr1:228286618 chr1:228286628 . . 0 31 hm5C_associated_SNPs_3449 0 0 1 3 228286622 228286644 mRNA hsa-miR-221 ARF1 miRanda miRanda
385 chr1 228286628 228286628 1 + C G rs187703170 228286618 + 228286598 228286638 41 GACCCACAGCCCCTCGGGAGCACCCCACCTCTGTGTGTGAT GACCCACAGCCCCTCGGGAGCACCCCACCTGTGTGTGTGAT < 41bp 1 0.311708779186932 1 0.439624518156052 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARF1 ENSG00000143761 UTR3 Human protein_coding chr1:228286618 chr1:228286628 . . 0 31 hm5C_associated_SNPs_3449 0 0 1 3 228286625 228286644 mRNA hsa-miR-222 ARF1 miRanda miRanda
386 chr1 228286628 228286628 1 + C G rs187703170 228286618 + 228286598 228286638 41 GACCCACAGCCCCTCGGGAGCACCCCACCTCTGTGTGTGAT GACCCACAGCCCCTCGGGAGCACCCCACCTGTGTGTGTGAT < 41bp 1 0.311708779186932 1 0.439624518156052 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARF1 ENSG00000143761 UTR3 Human protein_coding chr1:228286618 chr1:228286628 . . 0 31 hm5C_associated_SNPs_3449 0 0 1 3 228286617 228286638 mRNA hsa-miR-377 ARF1 miRanda miRanda
387 chr1 228286881 228286881 1 + T C rs149161835 228286870 + 228286850 228286890 41 TTTTCATTTCGACAAACAAGCACTGTAATTATAGCTATTAG TTTTCATTTCGACAAACAAGCACTGTAATTACAGCTATTAG < 41bp 1 0.30007711837324 1 0.112322390079498 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARF1 ENSG00000143761 UTR3 Human protein_coding chr1:228286870 chr1:228286881 . . 0 32 hm5C_associated_SNPs_3450 0 0 1 4 228286868 228286890 mRNA hsa-miR-155 ARF1 miRanda miRanda
388 chr1 228286881 228286881 1 + T C rs149161835 228286870 + 228286850 228286890 41 TTTTCATTTCGACAAACAAGCACTGTAATTATAGCTATTAG TTTTCATTTCGACAAACAAGCACTGTAATTACAGCTATTAG < 41bp 1 0.30007711837324 1 0.112322390079498 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARF1 ENSG00000143761 UTR3 Human protein_coding chr1:228286870 chr1:228286881 . . 0 32 hm5C_associated_SNPs_3450 0 0 1 4 228286862 228286883 mRNA hsa-miR-374a ARF1 miRanda miRanda
389 chr1 228286881 228286881 1 + T C rs149161835 228286870 + 228286850 228286890 41 TTTTCATTTCGACAAACAAGCACTGTAATTATAGCTATTAG TTTTCATTTCGACAAACAAGCACTGTAATTACAGCTATTAG < 41bp 1 0.30007711837324 1 0.112322390079498 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARF1 ENSG00000143761 UTR3 Human protein_coding chr1:228286870 chr1:228286881 . . 0 32 hm5C_associated_SNPs_3450 0 0 1 4 228286879 228286900 mRNA hsa-miR-590-3p ARF1 miRanda miRanda
390 chr1 228286881 228286881 1 + T C rs149161835 228286870 + 228286850 228286890 41 TTTTCATTTCGACAAACAAGCACTGTAATTATAGCTATTAG TTTTCATTTCGACAAACAAGCACTGTAATTACAGCTATTAG < 41bp 1 0.30007711837324 1 0.112322390079498 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARF1 ENSG00000143761 UTR3 Human protein_coding chr1:228286870 chr1:228286881 . . 0 32 hm5C_associated_SNPs_3450 0 0 1 4 228286862 228286883 mRNA hsa-miR-374b ARF1 miRanda miRanda
391 chr1 228881762 228881762 1 + G A rs114875384 228881764 + 228881744 228881784 41 GTGAAGTACACCTGTGTGGCCCAGTTCTGAAAGCTTTATAC GTGAAGTACACCTGTGTGACCCAGTTCTGAAAGCTTTATAC < 41bp 1 0.367651546181124 1 0.180224925279617 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RHOU ENSG00000116574 UTR3 Human protein_coding chr1:228881764 chr1:228881762 . . 0 19 hm5C_associated_SNPs_3472 0 0 1 1 228881762 228881784 mRNA hsa-miR-340 RHOU miRanda miRanda
392 chr1 235577776 235577776 1 + C T rs62620041 235577765 + 235577745 235577785 41 CAGGCACCCGACAGGAGGATCCTTTATTCGTCCGAACAAGG CAGGCACCCGACAGGAGGATCCTTTATTCGTTCGAACAAGG < 41bp 1 0.0156332955647719 1 0.0361113548278809 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235577765 chr1:235577776 nonsynonymous SNV 0.666 4 32 hm5C_associated_SNPs_3497 2 0 1 1 235577763 235577784 mRNA hsa-miR-375 TBCE miRanda miRanda
393 chr1 244870871 244870871 1 + G T rs79307321 244870862 + 244870842 244870882 41 GCAAAACACTAAGGCTCTAGCAGTGACTTGTTCACTAAAAA GCAAAACACTAAGGCTCTAGCAGTGACTTTTTCACTAAAAA < 41bp 1 0.649728772254346 1 0.303560018539429 experiment 0.700542455491307 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DESI2 ENSG00000121644 UTR3 Human protein_coding chr1:244870862 chr1:244870871 . . 0 30 hm5C_associated_SNPs_3516 0 0 1 1 244870851 244870871 mRNA hsa-miR-224 PPPDE1 miRanda miRanda
394 chr2 11924293 11924293 1 + G A rs3762583 11924313 + 11924293 11924333 41 GCTGGCATGCACCTGTAATCCCAGCTACTCGGGAGGCTGAG ACTGGCATGCACCTGTAATCCCAGCTACTCGGGAGGCTGAG < 41bp 1 0.149162206716929 1 0.374938666820526 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN1 ENSG00000134324 intronic Human protein_coding chr2:11924313 chr2:11924293 . . 0 1 hm5C_associated_SNPs_3612 0 0 1 2 11924287 11924308 mRNA hsa-miR-152 LPIN1 miRanda miRanda
395 chr2 11924293 11924293 1 + G A rs3762583 11924313 + 11924293 11924333 41 GCTGGCATGCACCTGTAATCCCAGCTACTCGGGAGGCTGAG ACTGGCATGCACCTGTAATCCCAGCTACTCGGGAGGCTGAG < 41bp 1 0.149162206716929 1 0.374938666820526 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN1 ENSG00000134324 intronic Human protein_coding chr2:11924313 chr2:11924293 . . 0 1 hm5C_associated_SNPs_3612 0 0 1 2 11924286 11924308 mRNA hsa-miR-148b LPIN1 miRanda miRanda
396 chr2 24191899 24191899 1 + A C rs184521190 24191879 + 24191859 24191899 41 TTCAAGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGA TTCAAGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGC < 41bp 1 0.299974621191024 1 0.448801517486572 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBXN2A ENSG00000173960 intronic Human protein_coding chr2:24191879 chr2:24191899 . . 0 41 hm5C_associated_SNPs_3624 0 0 0 4 24191888 24191905 mRNA hsa-miR-99a UBXN2A miRanda miRanda
397 chr2 24191899 24191899 1 + A C rs184521190 24191879 + 24191859 24191899 41 TTCAAGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGA TTCAAGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGC < 41bp 1 0.299974621191024 1 0.448801517486572 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBXN2A ENSG00000173960 intronic Human protein_coding chr2:24191879 chr2:24191899 . . 0 41 hm5C_associated_SNPs_3624 0 0 0 4 24191888 24191905 mRNA hsa-miR-100 UBXN2A miRanda miRanda
398 chr2 24191899 24191899 1 + A C rs184521190 24191879 + 24191859 24191899 41 TTCAAGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGA TTCAAGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGC < 41bp 1 0.299974621191024 1 0.448801517486572 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBXN2A ENSG00000173960 intronic Human protein_coding chr2:24191879 chr2:24191899 . . 0 41 hm5C_associated_SNPs_3624 0 0 0 4 24191888 24191905 mRNA hsa-miR-10a UBXN2A miRanda miRanda
399 chr2 24191899 24191899 1 + A C rs184521190 24191879 + 24191859 24191899 41 TTCAAGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGA TTCAAGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGC < 41bp 1 0.299974621191024 1 0.448801517486572 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBXN2A ENSG00000173960 intronic Human protein_coding chr2:24191879 chr2:24191899 . . 0 41 hm5C_associated_SNPs_3624 0 0 0 4 24191887 24191905 mRNA hsa-miR-10b UBXN2A miRanda miRanda
400 chr2 29149948 29149948 1 + C T rs139731773 29149964 + 29149944 29149984 41 ACATCCATATGGTTTCGCTGCTGGCTGAGTTTCAGAGATGA ACATTCATATGGTTTCGCTGCTGGCTGAGTTTCAGAGATGA < 41bp 1 0.21551835914659 1 0.29418408870697 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD53 ENSG00000265145 ncRNA_exonic Human snoRNA chr2:29149964 chr2:29149948 . . 0 5 hm5C_associated_SNPs_3690 0 0 1 5 29149946 29149970 mRNA hsa-miR-16 SNORD53 miRanda miRanda
401 chr2 29149948 29149948 1 + C T rs139731773 29149964 + 29149944 29149984 41 ACATCCATATGGTTTCGCTGCTGGCTGAGTTTCAGAGATGA ACATTCATATGGTTTCGCTGCTGGCTGAGTTTCAGAGATGA < 41bp 1 0.21551835914659 1 0.29418408870697 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD53 ENSG00000265145 ncRNA_exonic Human snoRNA chr2:29149964 chr2:29149948 . . 0 5 hm5C_associated_SNPs_3690 0 0 1 5 29149944 29149966 mRNA hsa-miR-15b SNORD53 miRanda miRanda
402 chr2 29149948 29149948 1 + C T rs139731773 29149964 + 29149944 29149984 41 ACATCCATATGGTTTCGCTGCTGGCTGAGTTTCAGAGATGA ACATTCATATGGTTTCGCTGCTGGCTGAGTTTCAGAGATGA < 41bp 1 0.21551835914659 1 0.29418408870697 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD53 ENSG00000265145 ncRNA_exonic Human snoRNA chr2:29149964 chr2:29149948 . . 0 5 hm5C_associated_SNPs_3690 0 0 1 5 29149944 29149966 mRNA hsa-miR-424 SNORD53 miRanda miRanda
403 chr2 29149948 29149948 1 + C T rs139731773 29149964 + 29149944 29149984 41 ACATCCATATGGTTTCGCTGCTGGCTGAGTTTCAGAGATGA ACATTCATATGGTTTCGCTGCTGGCTGAGTTTCAGAGATGA < 41bp 1 0.21551835914659 1 0.29418408870697 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD53 ENSG00000265145 ncRNA_exonic Human snoRNA chr2:29149964 chr2:29149948 . . 0 5 hm5C_associated_SNPs_3690 0 0 1 5 29149943 29149966 mRNA hsa-miR-497 SNORD53 miRanda miRanda
404 chr2 29149948 29149948 1 + C T rs139731773 29149964 + 29149944 29149984 41 ACATCCATATGGTTTCGCTGCTGGCTGAGTTTCAGAGATGA ACATTCATATGGTTTCGCTGCTGGCTGAGTTTCAGAGATGA < 41bp 1 0.21551835914659 1 0.29418408870697 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD53 ENSG00000265145 ncRNA_exonic Human snoRNA chr2:29149964 chr2:29149948 . . 0 5 hm5C_associated_SNPs_3690 0 0 1 5 29149944 29149966 mRNA hsa-miR-503 SNORD53 miRanda miRanda
405 chr2 29170124 29170124 1 + G A rs538253184 29170105 + 29170085 29170125 41 TTAGTACATTTAATTTGGTACATTTTCATAAAATATGAAGG TTAGTACATTTAATTTGGTACATTTTCATAAAATATGAAAG < 41bp 1 0.0362242182462955 1 0.0260713398456573 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR43 ENSG00000163811 UTR3 Human protein_coding chr2:29170105 chr2:29170124 . . 0 40 hm5C_associated_SNPs_3694 0 0 1 3 29170105 29170126 mRNA hsa-miR-205 WDR43 miRanda miRanda
406 chr2 29170124 29170124 1 + G A rs538253184 29170105 + 29170085 29170125 41 TTAGTACATTTAATTTGGTACATTTTCATAAAATATGAAGG TTAGTACATTTAATTTGGTACATTTTCATAAAATATGAAAG < 41bp 1 0.0362242182462955 1 0.0260713398456573 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR43 ENSG00000163811 UTR3 Human protein_coding chr2:29170105 chr2:29170124 . . 0 40 hm5C_associated_SNPs_3694 0 0 1 3 29170123 29170143 mRNA hsa-miR-145 WDR43 miRanda miRanda
407 chr2 29170124 29170124 1 + G A rs538253184 29170105 + 29170085 29170125 41 TTAGTACATTTAATTTGGTACATTTTCATAAAATATGAAGG TTAGTACATTTAATTTGGTACATTTTCATAAAATATGAAAG < 41bp 1 0.0362242182462955 1 0.0260713398456573 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR43 ENSG00000163811 UTR3 Human protein_coding chr2:29170105 chr2:29170124 . . 0 40 hm5C_associated_SNPs_3694 0 0 1 3 29170121 29170144 mRNA hsa-miR-136 WDR43 miRanda miRanda
408 chr2 29170125 29170125 1 + G A rs188446761 29170105 + 29170085 29170125 41 TTAGTACATTTAATTTGGTACATTTTCATAAAATATGAAGG TTAGTACATTTAATTTGGTACATTTTCATAAAATATGAAGA < 41bp 1 0.0334350688698403 1 0.0280688107013702 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR43 ENSG00000163811 UTR3 Human protein_coding chr2:29170105 chr2:29170125 . . 0 41 hm5C_associated_SNPs_3695 0 0 1 3 29170105 29170126 mRNA hsa-miR-205 WDR43 miRanda miRanda
409 chr2 29170125 29170125 1 + G A rs188446761 29170105 + 29170085 29170125 41 TTAGTACATTTAATTTGGTACATTTTCATAAAATATGAAGG TTAGTACATTTAATTTGGTACATTTTCATAAAATATGAAGA < 41bp 1 0.0334350688698403 1 0.0280688107013702 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR43 ENSG00000163811 UTR3 Human protein_coding chr2:29170105 chr2:29170125 . . 0 41 hm5C_associated_SNPs_3695 0 0 1 3 29170123 29170143 mRNA hsa-miR-145 WDR43 miRanda miRanda
410 chr2 29170125 29170125 1 + G A rs188446761 29170105 + 29170085 29170125 41 TTAGTACATTTAATTTGGTACATTTTCATAAAATATGAAGG TTAGTACATTTAATTTGGTACATTTTCATAAAATATGAAGA < 41bp 1 0.0334350688698403 1 0.0280688107013702 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR43 ENSG00000163811 UTR3 Human protein_coding chr2:29170105 chr2:29170125 . . 0 41 hm5C_associated_SNPs_3695 0 0 1 3 29170121 29170144 mRNA hsa-miR-136 WDR43 miRanda miRanda
411 chr2 37475339 37475339 1 + T A rs369731209 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATAAGTTAATGAATCCAAAGAAGATGGGAGAGAGA < 41bp 1 0.367111687344792 1 0.595303356647491 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475339 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_3717 0 0 1 1 37475334 37475356 mRNA hsa-miR-9 C2orf56 miRanda miRanda
412 chr2 37475339 37475339 1 + T A rs369731209 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATAAGTTAATGAATCCAAAGAAGATGGGAGAGAGAT < 41bp 1 0.38002884041131 1 0.3550044298172 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475339 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_3718 0 0 1 1 37475334 37475356 mRNA hsa-miR-9 C2orf56 miRanda miRanda
413 chr2 39008949 39008949 1 + G A rs1056104 39008951 + 39008931 39008971 41 CTATAGACCCACCATATGGTCCAGAAAATTGCAGCAGCTCT CTATAGACCCACCATATGATCCAGAAAATTGCAGCAGCTCT < 41bp 1 0.587147997000752 1 0.39697128534317 experiment 0.825704005998495 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008951 chr2:39008949 nonsynonymous SNV 0.949 0 19 hm5C_associated_SNPs_3719 0 0 1 3 39008949 39008970 mRNA hsa-miR-22 GEMIN6 miRanda miRanda
414 chr2 39008949 39008949 1 + G A rs1056104 39008951 + 39008931 39008971 41 CTATAGACCCACCATATGGTCCAGAAAATTGCAGCAGCTCT CTATAGACCCACCATATGATCCAGAAAATTGCAGCAGCTCT < 41bp 1 0.587147997000752 1 0.39697128534317 experiment 0.825704005998495 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008951 chr2:39008949 nonsynonymous SNV 0.949 0 19 hm5C_associated_SNPs_3719 0 0 1 3 39008934 39008955 mRNA hsa-miR-378 GEMIN6 miRanda miRanda
415 chr2 39008949 39008949 1 + G A rs1056104 39008951 + 39008931 39008971 41 CTATAGACCCACCATATGGTCCAGAAAATTGCAGCAGCTCT CTATAGACCCACCATATGATCCAGAAAATTGCAGCAGCTCT < 41bp 1 0.587147997000752 1 0.39697128534317 experiment 0.825704005998495 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008951 chr2:39008949 nonsynonymous SNV 0.949 0 19 hm5C_associated_SNPs_3719 0 0 1 3 39008933 39008955 mRNA hsa-miR-422a GEMIN6 miRanda miRanda
416 chr2 46612707 46612707 1 + G A rs546157125 46612697 + 46612677 46612717 41 CAGTGCTCCCACGGCCTGTACGGACACTGTGGAAGGCCTCC CAGTGCTCCCACGGCCTGTACGGACACTGTAGAAGGCCTCC < 41bp 1 0.28059301560399 1 0.254287600517273 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612697 chr2:46612707 . . 0 31 hm5C_associated_SNPs_3735 0 0 1 1 46612689 46612708 mRNA hsa-miR-128 EPAS1 miRanda miRanda
417 chr2 46612707 46612707 1 + G A rs546157125 46612701 + 46612681 46612721 41 GCTCCCACGGCCTGTACGGACACTGTGGAAGGCCTCCCTCT GCTCCCACGGCCTGTACGGACACTGTAGAAGGCCTCCCTCT < 41bp 1 0.740199305704621 1 0.143569260835648 experiment 0.519601388590758 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612701 chr2:46612707 . . 0 27 hm5C_associated_SNPs_3736 0 0 1 1 46612689 46612708 mRNA hsa-miR-128 EPAS1 miRanda miRanda
418 chr2 46612707 46612707 1 + G A rs546157125 46612713 + 46612693 46612733 41 TGTACGGACACTGTGGAAGGCCTCCCTCTGTCGGCTTTTTG TGTACGGACACTGTAGAAGGCCTCCCTCTGTCGGCTTTTTG < 41bp 1 0.040641550817985 1 0.0147075057029724 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612713 chr2:46612707 . . 0 15 hm5C_associated_SNPs_3737 0 0 1 1 46612689 46612708 mRNA hsa-miR-128 EPAS1 miRanda miRanda
419 chr2 46612707 46612707 1 + G A rs546157125 46612714 + 46612694 46612734 41 GTACGGACACTGTGGAAGGCCTCCCTCTGTCGGCTTTTTGC GTACGGACACTGTAGAAGGCCTCCCTCTGTCGGCTTTTTGC < 41bp 1 0.205685357255955 1 0.0533459782600403 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612714 chr2:46612707 . . 0 14 hm5C_associated_SNPs_3738 0 0 1 1 46612689 46612708 mRNA hsa-miR-128 EPAS1 miRanda miRanda
420 chr2 46612707 46612707 1 + G A rs546157125 46612716 + 46612696 46612736 41 ACGGACACTGTGGAAGGCCTCCCTCTGTCGGCTTTTTGCCA ACGGACACTGTAGAAGGCCTCCCTCTGTCGGCTTTTTGCCA < 41bp 1 0.101728485046165 1 0.0736076831817627 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612716 chr2:46612707 . . 0 12 hm5C_associated_SNPs_3739 0 0 1 1 46612689 46612708 mRNA hsa-miR-128 EPAS1 miRanda miRanda
421 chr2 46612707 46612707 1 + G A rs546157125 46612717 + 46612697 46612737 41 CGGACACTGTGGAAGGCCTCCCTCTGTCGGCTTTTTGCCAT CGGACACTGTAGAAGGCCTCCCTCTGTCGGCTTTTTGCCAT < 41bp 1 0.170168816984008 1 0.0290047824382782 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612717 chr2:46612707 . . 0 11 hm5C_associated_SNPs_3740 0 0 1 1 46612689 46612708 mRNA hsa-miR-128 EPAS1 miRanda miRanda
422 chr2 46612707 46612707 1 + G A rs546157125 46612718 + 46612698 46612738 41 GGACACTGTGGAAGGCCTCCCTCTGTCGGCTTTTTGCCATC GGACACTGTAGAAGGCCTCCCTCTGTCGGCTTTTTGCCATC < 41bp 1 0.481145072356663 1 0.171768695116043 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612718 chr2:46612707 . . 0 10 hm5C_associated_SNPs_3741 0 0 1 1 46612689 46612708 mRNA hsa-miR-128 EPAS1 miRanda miRanda
423 chr2 46612707 46612707 1 + G A rs546157125 46612720 + 46612700 46612740 41 ACACTGTGGAAGGCCTCCCTCTGTCGGCTTTTTGCCATCTG ACACTGTAGAAGGCCTCCCTCTGTCGGCTTTTTGCCATCTG < 41bp 1 0.359162579693769 1 0.385078310966492 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612720 chr2:46612707 . . 0 8 hm5C_associated_SNPs_3742 0 0 1 1 46612689 46612708 mRNA hsa-miR-128 EPAS1 miRanda miRanda
424 chr2 46612707 46612707 1 + G A rs546157125 46612724 + 46612704 46612744 41 TGTGGAAGGCCTCCCTCTGTCGGCTTTTTGCCATCTGTGAT TGTAGAAGGCCTCCCTCTGTCGGCTTTTTGCCATCTGTGAT < 41bp 1 0.621957300197359 1 0.724633693695068 experiment 0.756085399605281 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612724 chr2:46612707 . . 0 4 hm5C_associated_SNPs_3743 0 0 1 1 46612689 46612708 mRNA hsa-miR-128 EPAS1 miRanda miRanda
425 chr2 46612707 46612707 1 + G A rs546157125 46612727 + 46612707 46612747 41 GGAAGGCCTCCCTCTGTCGGCTTTTTGCCATCTGTGATATG AGAAGGCCTCCCTCTGTCGGCTTTTTGCCATCTGTGATATG < 41bp 1 0.0524949134346308 1 0.0168508589267731 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612727 chr2:46612707 . . 0 1 hm5C_associated_SNPs_3744 0 0 1 1 46612689 46612708 mRNA hsa-miR-128 EPAS1 miRanda miRanda
426 chr2 55461991 55461991 1 + A C rs2230613 55461971 + 55461951 55461991 41 ATTCTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGA ATTCTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGC < 41bp 1 0.167641328353461 1 0.072692334651947 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461971 chr2:55461991 synonymous SNV . 0 41 hm5C_associated_SNPs_3765 0 0 1 3 55461987 55462009 mRNA hsa-miR-29a RPS27A miRanda miRanda
427 chr2 55461991 55461991 1 + A C rs2230613 55461971 + 55461951 55461991 41 ATTCTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGA ATTCTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGC < 41bp 1 0.167641328353461 1 0.072692334651947 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461971 chr2:55461991 synonymous SNV . 0 41 hm5C_associated_SNPs_3765 0 0 1 3 55461986 55462009 mRNA hsa-miR-29b RPS27A miRanda miRanda
428 chr2 55461991 55461991 1 + A C rs2230613 55461971 + 55461951 55461991 41 ATTCTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGA ATTCTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGC < 41bp 1 0.167641328353461 1 0.072692334651947 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461971 chr2:55461991 synonymous SNV . 0 41 hm5C_associated_SNPs_3765 0 0 1 3 55461987 55462009 mRNA hsa-miR-29c RPS27A miRanda miRanda
429 chr2 55461991 55461991 1 + A C rs2230613 55461974 + 55461954 55461994 41 CTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGAC CTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGCGAC < 41bp 1 0.135783132053706 1 0.136200338602066 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461974 chr2:55461991 synonymous SNV . 0 38 hm5C_associated_SNPs_3766 0 0 1 3 55461987 55462009 mRNA hsa-miR-29a RPS27A miRanda miRanda
430 chr2 55461991 55461991 1 + A C rs2230613 55461974 + 55461954 55461994 41 CTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGAC CTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGCGAC < 41bp 1 0.135783132053706 1 0.136200338602066 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461974 chr2:55461991 synonymous SNV . 0 38 hm5C_associated_SNPs_3766 0 0 1 3 55461986 55462009 mRNA hsa-miR-29b RPS27A miRanda miRanda
431 chr2 55461991 55461991 1 + A C rs2230613 55461974 + 55461954 55461994 41 CTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGAC CTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGCGAC < 41bp 1 0.135783132053706 1 0.136200338602066 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461974 chr2:55461991 synonymous SNV . 0 38 hm5C_associated_SNPs_3766 0 0 1 3 55461987 55462009 mRNA hsa-miR-29c RPS27A miRanda miRanda
432 chr2 55461991 55461991 1 + A C rs2230613 55461979 + 55461959 55461999 41 ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGT ATTAACAGGAGTCTACTCTTCATCTTGTGTTGCGACTTCGT < 41bp 1 0.184577844500369 1 0.0366038382053375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461979 chr2:55461991 synonymous SNV . 0 33 hm5C_associated_SNPs_3767 0 0 1 3 55461987 55462009 mRNA hsa-miR-29a RPS27A miRanda miRanda
433 chr2 55461991 55461991 1 + A C rs2230613 55461979 + 55461959 55461999 41 ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGT ATTAACAGGAGTCTACTCTTCATCTTGTGTTGCGACTTCGT < 41bp 1 0.184577844500369 1 0.0366038382053375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461979 chr2:55461991 synonymous SNV . 0 33 hm5C_associated_SNPs_3767 0 0 1 3 55461986 55462009 mRNA hsa-miR-29b RPS27A miRanda miRanda
434 chr2 55461991 55461991 1 + A C rs2230613 55461979 + 55461959 55461999 41 ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGT ATTAACAGGAGTCTACTCTTCATCTTGTGTTGCGACTTCGT < 41bp 1 0.184577844500369 1 0.0366038382053375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461979 chr2:55461991 synonymous SNV . 0 33 hm5C_associated_SNPs_3767 0 0 1 3 55461987 55462009 mRNA hsa-miR-29c RPS27A miRanda miRanda
435 chr2 55461991 55461991 1 + A C rs2230613 55462007 + 55461987 55462027 41 GTTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT GTTGCGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT < 41bp 1 0.381594366282405 1 0.206069052219391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55462007 chr2:55461991 synonymous SNV . 0 5 hm5C_associated_SNPs_3768 0 0 1 3 55461987 55462009 mRNA hsa-miR-29a RPS27A miRanda miRanda
436 chr2 55461991 55461991 1 + A C rs2230613 55462007 + 55461987 55462027 41 GTTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT GTTGCGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT < 41bp 1 0.381594366282405 1 0.206069052219391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55462007 chr2:55461991 synonymous SNV . 0 5 hm5C_associated_SNPs_3768 0 0 1 3 55461986 55462009 mRNA hsa-miR-29b RPS27A miRanda miRanda
437 chr2 55461991 55461991 1 + A C rs2230613 55462007 + 55461987 55462027 41 GTTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT GTTGCGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT < 41bp 1 0.381594366282405 1 0.206069052219391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55462007 chr2:55461991 synonymous SNV . 0 5 hm5C_associated_SNPs_3768 0 0 1 3 55461987 55462009 mRNA hsa-miR-29c RPS27A miRanda miRanda
438 chr2 71297695 71297695 1 + T C rs2287328 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGACGGACTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.631106540093751 1 0.358749747276306 experiment 0.737786919812498 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297695 synonymous SNV . 0 12 hm5C_associated_SNPs_3791 0 0 1 2 71297694 71297715 mRNA hsa-miR-140-5p NAGK miRanda miRanda
439 chr2 71297695 71297695 1 + T C rs2287328 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGACGGACTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.631106540093751 1 0.358749747276306 experiment 0.737786919812498 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297695 synonymous SNV . 0 12 hm5C_associated_SNPs_3791 0 0 1 2 71297689 71297709 mRNA hsa-miR-599 NAGK miRanda miRanda
440 chr2 74154160 74154160 1 + C G rs145252858 74154149 + 74154129 74154169 41 GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAA GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTGTCCATCGAA < 41bp 1 0.681706614196474 1 0.303615063428879 experiment 0.636586771607052 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154149 chr2:74154160 synonymous SNV . 0 32 hm5C_associated_SNPs_3807 2 0 1 1 74154156 74154178 mRNA hsa-miR-455-5p DGUOK miRanda miRanda
441 chr2 74154160 74154160 1 + C G rs145252858 74154151 + 74154131 74154171 41 CTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGG CTGCACGCGGGGCGCGGGCCCCGAAGGCTGTCCATCGAAGG < 41bp 1 0.746037454300412 1 0.526952624320984 experiment 0.507925091399176 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154151 chr2:74154160 synonymous SNV . 0 30 hm5C_associated_SNPs_3808 2 0 1 1 74154156 74154178 mRNA hsa-miR-455-5p DGUOK miRanda miRanda
442 chr2 74154160 74154160 1 + C G rs145252858 74154152 + 74154132 74154172 41 TGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGGC TGCACGCGGGGCGCGGGCCCCGAAGGCTGTCCATCGAAGGC < 41bp 1 0.790641637436191 1 0.77873694896698 experiment 0.418716725127618 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154152 chr2:74154160 synonymous SNV . 0 29 hm5C_associated_SNPs_3809 2 0 1 1 74154156 74154178 mRNA hsa-miR-455-5p DGUOK miRanda miRanda
443 chr2 85598245 85598245 1 + G A rs145555897 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCACCGCCCTCCGACACTACCTCT < 41bp 1 0.43080222836372 1 0.443441867828369 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598245 nonsynonymous SNV 0.185 2 20 hm5C_associated_SNPs_3817 0 0 0 4 85598245 85598266 mRNA hsa-let-7f ELMOD3 miRanda miRanda
444 chr2 85598245 85598245 1 + G A rs145555897 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCACCGCCCTCCGACACTACCTCT < 41bp 1 0.43080222836372 1 0.443441867828369 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598245 nonsynonymous SNV 0.185 2 20 hm5C_associated_SNPs_3817 0 0 0 4 85598244 85598265 mRNA hsa-miR-196a ELMOD3 miRanda miRanda
445 chr2 85598245 85598245 1 + G A rs145555897 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCACCGCCCTCCGACACTACCTCT < 41bp 1 0.43080222836372 1 0.443441867828369 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598245 nonsynonymous SNV 0.185 2 20 hm5C_associated_SNPs_3817 0 0 0 4 85598241 85598263 mRNA hsa-miR-142-3p ELMOD3 miRanda miRanda
446 chr2 85598245 85598245 1 + G A rs145555897 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCACCGCCCTCCGACACTACCTCT < 41bp 1 0.43080222836372 1 0.443441867828369 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598245 nonsynonymous SNV 0.185 2 20 hm5C_associated_SNPs_3817 0 0 0 4 85598244 85598265 mRNA hsa-miR-196b ELMOD3 miRanda miRanda
447 chr2 85598245 85598245 1 + G A rs145555897 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCACCGCCCTCCGACACTACCTCTTCGGG < 41bp 1 0.717993656961562 1 0.752536654472351 experiment 0.564012686076877 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598245 nonsynonymous SNV 0.185 2 15 hm5C_associated_SNPs_3818 0 0 0 4 85598245 85598266 mRNA hsa-let-7f ELMOD3 miRanda miRanda
448 chr2 85598245 85598245 1 + G A rs145555897 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCACCGCCCTCCGACACTACCTCTTCGGG < 41bp 1 0.717993656961562 1 0.752536654472351 experiment 0.564012686076877 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598245 nonsynonymous SNV 0.185 2 15 hm5C_associated_SNPs_3818 0 0 0 4 85598244 85598265 mRNA hsa-miR-196a ELMOD3 miRanda miRanda
449 chr2 85598245 85598245 1 + G A rs145555897 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCACCGCCCTCCGACACTACCTCTTCGGG < 41bp 1 0.717993656961562 1 0.752536654472351 experiment 0.564012686076877 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598245 nonsynonymous SNV 0.185 2 15 hm5C_associated_SNPs_3818 0 0 0 4 85598241 85598263 mRNA hsa-miR-142-3p ELMOD3 miRanda miRanda
450 chr2 85598245 85598245 1 + G A rs145555897 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCACCGCCCTCCGACACTACCTCTTCGGG < 41bp 1 0.717993656961562 1 0.752536654472351 experiment 0.564012686076877 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598245 nonsynonymous SNV 0.185 2 15 hm5C_associated_SNPs_3818 0 0 0 4 85598244 85598265 mRNA hsa-miR-196b ELMOD3 miRanda miRanda
451 chr2 85772072 85772072 1 + T C rs571321000 85772091 + 85772071 85772111 41 TTTCTCTCAACACCATGATTCCTTTAACAACATGTTTCCAG TCTCTCTCAACACCATGATTCCTTTAACAACATGTTTCCAG < 41bp 1 0.062953575101282 1 0.0620160400867462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGCX;MAT2A ENSG00000115486;ENSG00000168906 UTR3 Human other chr2:85772091 chr2:85772072 . . 0 2 hm5C_associated_SNPs_3819 0 0 1 3 85772059 85772080 mRNA hsa-miR-185 MAT2A miRanda miRanda
452 chr2 85772072 85772072 1 + T C rs571321000 85772091 + 85772071 85772111 41 TTTCTCTCAACACCATGATTCCTTTAACAACATGTTTCCAG TCTCTCTCAACACCATGATTCCTTTAACAACATGTTTCCAG < 41bp 1 0.062953575101282 1 0.0620160400867462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGCX;MAT2A ENSG00000115486;ENSG00000168906 UTR3 Human other chr2:85772091 chr2:85772072 . . 0 2 hm5C_associated_SNPs_3819 0 0 1 3 85772056 85772077 mRNA hsa-miR-539 MAT2A miRanda miRanda
453 chr2 85772072 85772072 1 + T C rs571321000 85772091 + 85772071 85772111 41 TTTCTCTCAACACCATGATTCCTTTAACAACATGTTTCCAG TCTCTCTCAACACCATGATTCCTTTAACAACATGTTTCCAG < 41bp 1 0.062953575101282 1 0.0620160400867462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGCX;MAT2A ENSG00000115486;ENSG00000168906 UTR3 Human other chr2:85772091 chr2:85772072 . . 0 2 hm5C_associated_SNPs_3819 0 0 1 3 85772063 85772083 mRNA hsa-miR-653 MAT2A miRanda miRanda
454 chr2 86363074 86363074 1 + A G rs3770069 86363062 + 86363042 86363082 41 AGCTGAATGTATGTGTTTCTCCTTTGTCCTGCATGTGGCAG AGCTGAATGTATGTGTTTCTCCTTTGTCCTGCGTGTGGCAG < 41bp 1 0.0375481681831253 1 0.0347179174423218 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD94 ENSG00000208772 ncRNA_exonic Human snoRNA chr2:86363062 chr2:86363074 . . 0 33 hm5C_associated_SNPs_3821 0 0 1 2 86363064 86363086 mRNA hsa-miR-22 SNORD94 miRanda miRanda
455 chr2 86363074 86363074 1 + A G rs3770069 86363062 + 86363042 86363082 41 AGCTGAATGTATGTGTTTCTCCTTTGTCCTGCATGTGGCAG AGCTGAATGTATGTGTTTCTCCTTTGTCCTGCGTGTGGCAG < 41bp 1 0.0375481681831253 1 0.0347179174423218 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD94 ENSG00000208772 ncRNA_exonic Human snoRNA chr2:86363062 chr2:86363074 . . 0 33 hm5C_associated_SNPs_3821 0 0 1 2 86363053 86363077 mRNA hsa-miR-214 SNORD94 miRanda miRanda
456 chr2 86363074 86363074 1 + A G rs3770069 86363063 + 86363043 86363083 41 GCTGAATGTATGTGTTTCTCCTTTGTCCTGCATGTGGCAGG GCTGAATGTATGTGTTTCTCCTTTGTCCTGCGTGTGGCAGG < 41bp 1 0.112052872649085 1 0.0235425531864166 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD94 ENSG00000208772 ncRNA_exonic Human snoRNA chr2:86363063 chr2:86363074 . . 0 32 hm5C_associated_SNPs_3822 0 0 1 2 86363064 86363086 mRNA hsa-miR-22 SNORD94 miRanda miRanda
457 chr2 86363074 86363074 1 + A G rs3770069 86363063 + 86363043 86363083 41 GCTGAATGTATGTGTTTCTCCTTTGTCCTGCATGTGGCAGG GCTGAATGTATGTGTTTCTCCTTTGTCCTGCGTGTGGCAGG < 41bp 1 0.112052872649085 1 0.0235425531864166 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD94 ENSG00000208772 ncRNA_exonic Human snoRNA chr2:86363063 chr2:86363074 . . 0 32 hm5C_associated_SNPs_3822 0 0 1 2 86363053 86363077 mRNA hsa-miR-214 SNORD94 miRanda miRanda
458 chr2 86363074 86363074 1 + A G rs3770069 86363073 + 86363053 86363093 41 TGTGTTTCTCCTTTGTCCTGCATGTGGCAGGCTGATGGGGA TGTGTTTCTCCTTTGTCCTGCGTGTGGCAGGCTGATGGGGA < 41bp 1 0.0563244862397462 1 0.107215017080307 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD94 ENSG00000208772 ncRNA_exonic Human snoRNA chr2:86363073 chr2:86363074 . . 0 22 hm5C_associated_SNPs_3823 0 0 1 2 86363064 86363086 mRNA hsa-miR-22 SNORD94 miRanda miRanda
459 chr2 86363074 86363074 1 + A G rs3770069 86363073 + 86363053 86363093 41 TGTGTTTCTCCTTTGTCCTGCATGTGGCAGGCTGATGGGGA TGTGTTTCTCCTTTGTCCTGCGTGTGGCAGGCTGATGGGGA < 41bp 1 0.0563244862397462 1 0.107215017080307 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD94 ENSG00000208772 ncRNA_exonic Human snoRNA chr2:86363073 chr2:86363074 . . 0 22 hm5C_associated_SNPs_3823 0 0 1 2 86363053 86363077 mRNA hsa-miR-214 SNORD94 miRanda miRanda
460 chr2 86439552 86439552 1 + G A rs116387151 86439559 + 86439539 86439579 41 CACTTCTGAGACGGCAAAGCCAACCACTTAGAAGCCTTCCA CACTTCTGAGACGACAAAGCCAACCACTTAGAAGCCTTCCA < 41bp 1 0.455942993251258 1 0.340664386749268 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL35 ENSG00000132313 UTR3 Human protein_coding chr2:86439559 chr2:86439552 . . 0 14 hm5C_associated_SNPs_3825 0 0 1 1 86439550 86439567 mRNA hsa-miR-140-5p MRPL35 miRanda miRanda
461 chr2 87003023 87003023 1 + A G rs566048242 87003036 + 87003016 87003056 41 CAACCCTATCATCGCTGATGCTTTCTGCATGTCAGCAGTCC CAACCCTGTCATCGCTGATGCTTTCTGCATGTCAGCAGTCC < 41bp 1 0.0612288393924631 1 0.0276375114917755 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RMND5A ENSG00000153561 UTR3 Human protein_coding chr2:87003036 chr2:87003023 . . 0 8 hm5C_associated_SNPs_3827 0 0 1 1 87003004 87003023 mRNA hsa-miR-296-3p RMND5A miRanda miRanda
462 chr2 99802650 99802650 1 + G A rs150171730 99802640 + 99802620 99802660 41 CTACTTCCTACTTCCCACAGCCTCTAAAGAGAGCAATCACT CTACTTCCTACTTCCCACAGCCTCTAAAGAAAGCAATCACT < 41bp 1 0.0904324890256116 1 0.154283165931702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPL30 ENSG00000241962 CDS Human protein_coding chr2:99802640 chr2:99802650 nonsynonymous SNV . 0 31 hm5C_associated_SNPs_3855 0 0 1 1 99802650 99802675 mRNA hsa-miR-338-3p MRPL30 miRanda miRanda
463 chr2 118866963 118866963 1 + C A rs1486116 118866953 + 118866933 118866973 41 GTCTTGGGGGTGGATGAATACATAATTTCTCATGTATTCGT GTCTTGGGGGTGGATGAATACATAATTTCTAATGTATTCGT < 41bp 1 0.703147251656057 1 0.142694026231766 experiment 0.593705496687886 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INSIG2 ENSG00000125629 UTR3 Human protein_coding chr2:118866953 chr2:118866963 . . 0 31 hm5C_associated_SNPs_3917 0 0 1 1 118866943 118866964 mRNA hsa-miR-539 INSIG2 miRanda miRanda
464 chr2 122288478 122288478 1 + C A rs144448852 122288487 + 122288467 122288507 41 TCTTGGGGTTGCGCTACTGTCCAATGAGCGCATAGTGAGGG TCTTGGGGTTGAGCTACTGTCCAATGAGCGCATAGTGAGGG < 41bp 1 0.573113756115221 1 0.147417515516281 experiment 0.853772487769557 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288487 chr2:122288478 . . 0 12 hm5C_associated_SNPs_3933 0 0 1 1 122288468 122288487 mRNA hsa-miR-144 RNU4ATAC miRanda miRanda
465 chr2 122288478 122288478 1 + C A rs144448852 122288497 + 122288477 122288517 41 GCGCTACTGTCCAATGAGCGCATAGTGAGGGCAGTACTGCT GAGCTACTGTCCAATGAGCGCATAGTGAGGGCAGTACTGCT < 41bp 1 0.470826118182216 1 0.150676608085632 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288497 chr2:122288478 . . 0 2 hm5C_associated_SNPs_3934 0 0 1 1 122288468 122288487 mRNA hsa-miR-144 RNU4ATAC miRanda miRanda
466 chr2 122288554 122288554 1 + T C rs145446412 122288536 + 122288516 122288556 41 CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTTTG CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTCTG < 41bp 1 0.56495780785429 1 0.072864294052124 experiment 0.870084384291419 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288536 chr2:122288554 . . 0 39 hm5C_associated_SNPs_3963 0 0 1 9 122288553 122288574 mRNA hsa-miR-25 RNU4ATAC miRanda miRanda
467 chr2 122288554 122288554 1 + T C rs145446412 122288536 + 122288516 122288556 41 CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTTTG CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTCTG < 41bp 1 0.56495780785429 1 0.072864294052124 experiment 0.870084384291419 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288536 chr2:122288554 . . 0 39 hm5C_associated_SNPs_3963 0 0 1 9 122288551 122288572 mRNA hsa-miR-29a RNU4ATAC miRanda miRanda
468 chr2 122288554 122288554 1 + T C rs145446412 122288536 + 122288516 122288556 41 CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTTTG CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTCTG < 41bp 1 0.56495780785429 1 0.072864294052124 experiment 0.870084384291419 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288536 chr2:122288554 . . 0 39 hm5C_associated_SNPs_3963 0 0 1 9 122288553 122288574 mRNA hsa-miR-32 RNU4ATAC miRanda miRanda
469 chr2 122288554 122288554 1 + T C rs145446412 122288536 + 122288516 122288556 41 CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTTTG CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTCTG < 41bp 1 0.56495780785429 1 0.072864294052124 experiment 0.870084384291419 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288536 chr2:122288554 . . 0 39 hm5C_associated_SNPs_3963 0 0 1 9 122288553 122288574 mRNA hsa-miR-92a RNU4ATAC miRanda miRanda
470 chr2 122288554 122288554 1 + T C rs145446412 122288536 + 122288516 122288556 41 CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTTTG CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTCTG < 41bp 1 0.56495780785429 1 0.072864294052124 experiment 0.870084384291419 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288536 chr2:122288554 . . 0 39 hm5C_associated_SNPs_3963 0 0 1 9 122288550 122288572 mRNA hsa-miR-29b RNU4ATAC miRanda miRanda
471 chr2 122288554 122288554 1 + T C rs145446412 122288536 + 122288516 122288556 41 CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTTTG CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTCTG < 41bp 1 0.56495780785429 1 0.072864294052124 experiment 0.870084384291419 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288536 chr2:122288554 . . 0 39 hm5C_associated_SNPs_3963 0 0 1 9 122288551 122288572 mRNA hsa-miR-29c RNU4ATAC miRanda miRanda
472 chr2 122288554 122288554 1 + T C rs145446412 122288536 + 122288516 122288556 41 CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTTTG CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTCTG < 41bp 1 0.56495780785429 1 0.072864294052124 experiment 0.870084384291419 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288536 chr2:122288554 . . 0 39 hm5C_associated_SNPs_3963 0 0 1 9 122288552 122288574 mRNA hsa-miR-363 RNU4ATAC miRanda miRanda
473 chr2 122288554 122288554 1 + T C rs145446412 122288536 + 122288516 122288556 41 CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTTTG CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTCTG < 41bp 1 0.56495780785429 1 0.072864294052124 experiment 0.870084384291419 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288536 chr2:122288554 . . 0 39 hm5C_associated_SNPs_3963 0 0 1 9 122288553 122288574 mRNA hsa-miR-367 RNU4ATAC miRanda miRanda
474 chr2 122288554 122288554 1 + T C rs145446412 122288536 + 122288516 122288556 41 CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTTTG CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTCTG < 41bp 1 0.56495780785429 1 0.072864294052124 experiment 0.870084384291419 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288536 chr2:122288554 . . 0 39 hm5C_associated_SNPs_3963 0 0 1 9 122288553 122288574 mRNA hsa-miR-92b RNU4ATAC miRanda miRanda
475 chr2 122288554 122288554 1 + T C rs145446412 122288542 + 122288522 122288562 41 CCTGAACAACACACCCGCATCAACTAGAGCTTTTGCTTTAT CCTGAACAACACACCCGCATCAACTAGAGCTTCTGCTTTAT < 41bp 1 0.363404051946429 1 0.110762536525726 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288542 chr2:122288554 . . 0 33 hm5C_associated_SNPs_3964 0 0 1 9 122288553 122288574 mRNA hsa-miR-25 RNU4ATAC miRanda miRanda
476 chr2 122288554 122288554 1 + T C rs145446412 122288542 + 122288522 122288562 41 CCTGAACAACACACCCGCATCAACTAGAGCTTTTGCTTTAT CCTGAACAACACACCCGCATCAACTAGAGCTTCTGCTTTAT < 41bp 1 0.363404051946429 1 0.110762536525726 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288542 chr2:122288554 . . 0 33 hm5C_associated_SNPs_3964 0 0 1 9 122288551 122288572 mRNA hsa-miR-29a RNU4ATAC miRanda miRanda
477 chr2 122288554 122288554 1 + T C rs145446412 122288542 + 122288522 122288562 41 CCTGAACAACACACCCGCATCAACTAGAGCTTTTGCTTTAT CCTGAACAACACACCCGCATCAACTAGAGCTTCTGCTTTAT < 41bp 1 0.363404051946429 1 0.110762536525726 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288542 chr2:122288554 . . 0 33 hm5C_associated_SNPs_3964 0 0 1 9 122288553 122288574 mRNA hsa-miR-32 RNU4ATAC miRanda miRanda
478 chr2 122288554 122288554 1 + T C rs145446412 122288542 + 122288522 122288562 41 CCTGAACAACACACCCGCATCAACTAGAGCTTTTGCTTTAT CCTGAACAACACACCCGCATCAACTAGAGCTTCTGCTTTAT < 41bp 1 0.363404051946429 1 0.110762536525726 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288542 chr2:122288554 . . 0 33 hm5C_associated_SNPs_3964 0 0 1 9 122288553 122288574 mRNA hsa-miR-92a RNU4ATAC miRanda miRanda
479 chr2 122288554 122288554 1 + T C rs145446412 122288542 + 122288522 122288562 41 CCTGAACAACACACCCGCATCAACTAGAGCTTTTGCTTTAT CCTGAACAACACACCCGCATCAACTAGAGCTTCTGCTTTAT < 41bp 1 0.363404051946429 1 0.110762536525726 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288542 chr2:122288554 . . 0 33 hm5C_associated_SNPs_3964 0 0 1 9 122288550 122288572 mRNA hsa-miR-29b RNU4ATAC miRanda miRanda
480 chr2 122288554 122288554 1 + T C rs145446412 122288542 + 122288522 122288562 41 CCTGAACAACACACCCGCATCAACTAGAGCTTTTGCTTTAT CCTGAACAACACACCCGCATCAACTAGAGCTTCTGCTTTAT < 41bp 1 0.363404051946429 1 0.110762536525726 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288542 chr2:122288554 . . 0 33 hm5C_associated_SNPs_3964 0 0 1 9 122288551 122288572 mRNA hsa-miR-29c RNU4ATAC miRanda miRanda
481 chr2 122288554 122288554 1 + T C rs145446412 122288542 + 122288522 122288562 41 CCTGAACAACACACCCGCATCAACTAGAGCTTTTGCTTTAT CCTGAACAACACACCCGCATCAACTAGAGCTTCTGCTTTAT < 41bp 1 0.363404051946429 1 0.110762536525726 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288542 chr2:122288554 . . 0 33 hm5C_associated_SNPs_3964 0 0 1 9 122288552 122288574 mRNA hsa-miR-363 RNU4ATAC miRanda miRanda
482 chr2 122288554 122288554 1 + T C rs145446412 122288542 + 122288522 122288562 41 CCTGAACAACACACCCGCATCAACTAGAGCTTTTGCTTTAT CCTGAACAACACACCCGCATCAACTAGAGCTTCTGCTTTAT < 41bp 1 0.363404051946429 1 0.110762536525726 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288542 chr2:122288554 . . 0 33 hm5C_associated_SNPs_3964 0 0 1 9 122288553 122288574 mRNA hsa-miR-367 RNU4ATAC miRanda miRanda
483 chr2 122288554 122288554 1 + T C rs145446412 122288542 + 122288522 122288562 41 CCTGAACAACACACCCGCATCAACTAGAGCTTTTGCTTTAT CCTGAACAACACACCCGCATCAACTAGAGCTTCTGCTTTAT < 41bp 1 0.363404051946429 1 0.110762536525726 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288542 chr2:122288554 . . 0 33 hm5C_associated_SNPs_3964 0 0 1 9 122288553 122288574 mRNA hsa-miR-92b RNU4ATAC miRanda miRanda
484 chr2 122288554 122288554 1 + T C rs145446412 122288570 + 122288550 122288590 41 GCTTTTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA GCTTCTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA < 41bp 1 0.106780404343198 1 0.0839719474315643 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288570 chr2:122288554 . . 0 5 hm5C_associated_SNPs_3965 0 0 1 9 122288553 122288574 mRNA hsa-miR-25 RNU4ATAC miRanda miRanda
485 chr2 122288554 122288554 1 + T C rs145446412 122288570 + 122288550 122288590 41 GCTTTTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA GCTTCTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA < 41bp 1 0.106780404343198 1 0.0839719474315643 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288570 chr2:122288554 . . 0 5 hm5C_associated_SNPs_3965 0 0 1 9 122288551 122288572 mRNA hsa-miR-29a RNU4ATAC miRanda miRanda
486 chr2 122288554 122288554 1 + T C rs145446412 122288570 + 122288550 122288590 41 GCTTTTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA GCTTCTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA < 41bp 1 0.106780404343198 1 0.0839719474315643 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288570 chr2:122288554 . . 0 5 hm5C_associated_SNPs_3965 0 0 1 9 122288553 122288574 mRNA hsa-miR-32 RNU4ATAC miRanda miRanda
487 chr2 122288554 122288554 1 + T C rs145446412 122288570 + 122288550 122288590 41 GCTTTTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA GCTTCTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA < 41bp 1 0.106780404343198 1 0.0839719474315643 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288570 chr2:122288554 . . 0 5 hm5C_associated_SNPs_3965 0 0 1 9 122288553 122288574 mRNA hsa-miR-92a RNU4ATAC miRanda miRanda
488 chr2 122288554 122288554 1 + T C rs145446412 122288570 + 122288550 122288590 41 GCTTTTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA GCTTCTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA < 41bp 1 0.106780404343198 1 0.0839719474315643 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288570 chr2:122288554 . . 0 5 hm5C_associated_SNPs_3965 0 0 1 9 122288550 122288572 mRNA hsa-miR-29b RNU4ATAC miRanda miRanda
489 chr2 122288554 122288554 1 + T C rs145446412 122288570 + 122288550 122288590 41 GCTTTTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA GCTTCTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA < 41bp 1 0.106780404343198 1 0.0839719474315643 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288570 chr2:122288554 . . 0 5 hm5C_associated_SNPs_3965 0 0 1 9 122288551 122288572 mRNA hsa-miR-29c RNU4ATAC miRanda miRanda
490 chr2 122288554 122288554 1 + T C rs145446412 122288570 + 122288550 122288590 41 GCTTTTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA GCTTCTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA < 41bp 1 0.106780404343198 1 0.0839719474315643 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288570 chr2:122288554 . . 0 5 hm5C_associated_SNPs_3965 0 0 1 9 122288552 122288574 mRNA hsa-miR-363 RNU4ATAC miRanda miRanda
491 chr2 122288554 122288554 1 + T C rs145446412 122288570 + 122288550 122288590 41 GCTTTTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA GCTTCTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA < 41bp 1 0.106780404343198 1 0.0839719474315643 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288570 chr2:122288554 . . 0 5 hm5C_associated_SNPs_3965 0 0 1 9 122288553 122288574 mRNA hsa-miR-367 RNU4ATAC miRanda miRanda
492 chr2 122288554 122288554 1 + T C rs145446412 122288570 + 122288550 122288590 41 GCTTTTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA GCTTCTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA < 41bp 1 0.106780404343198 1 0.0839719474315643 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288570 chr2:122288554 . . 0 5 hm5C_associated_SNPs_3965 0 0 1 9 122288553 122288574 mRNA hsa-miR-92b RNU4ATAC miRanda miRanda
493 chr2 122408255 122408255 1 + G A rs557344818 122408254 + 122408234 122408274 41 CCGCATCAGGCTCCTATGCACGCCGGTAATTTGATGTGTTG CCGCATCAGGCTCCTATGCACACCGGTAATTTGATGTGTTG < 41bp 1 0.698320841883097 1 0.0569392442703247 experiment 0.603358316233807 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NIFK-AS1 ENSG00000236859 ncRNA_exonic Human antisense chr2:122408254 chr2:122408255 . . 0 22 hm5C_associated_SNPs_3966 0 0 0 1 122408253 122408277 mRNA hsa-miR-342-3p LOC254128 miRanda miRanda
494 chr2 122408255 122408255 1 + G A rs557344818 122408257 + 122408237 122408277 41 CATCAGGCTCCTATGCACGCCGGTAATTTGATGTGTTGAGA CATCAGGCTCCTATGCACACCGGTAATTTGATGTGTTGAGA < 41bp 1 0.554198640206582 1 0.446872711181641 experiment 0.891602719586835 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIFK-AS1 ENSG00000236859 ncRNA_exonic Human antisense chr2:122408257 chr2:122408255 . . 0 19 hm5C_associated_SNPs_3967 0 0 0 1 122408253 122408277 mRNA hsa-miR-342-3p LOC254128 miRanda miRanda
495 chr2 131906250 131906250 1 + C G rs16856546 131906238 + 131906218 131906258 41 ACCTAGTGATGACCACGGGTCTGCTTTTCTCTCTGATCCTA ACCTAGTGATGACCACGGGTCTGCTTTTCTCTGTGATCCTA < 41bp 1 0.476454882281298 1 0.0669590532779694 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHB2 ENSG00000115762 UTR3 Human protein_coding chr2:131906238 chr2:131906250 . . 0 33 hm5C_associated_SNPs_3989 0 0 1 1 131906250 131906273 mRNA hsa-miR-505 PLEKHB2 miRanda miRanda
496 chr2 131906250 131906250 1 + C G rs16856546 131906241 + 131906221 131906261 41 TAGTGATGACCACGGGTCTGCTTTTCTCTCTGATCCTAGGG TAGTGATGACCACGGGTCTGCTTTTCTCTGTGATCCTAGGG < 41bp 1 0.120334374816329 1 0.0328963398933411 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHB2 ENSG00000115762 UTR3 Human protein_coding chr2:131906241 chr2:131906250 . . 0 30 hm5C_associated_SNPs_3990 0 0 1 1 131906250 131906273 mRNA hsa-miR-505 PLEKHB2 miRanda miRanda
497 chr2 131906250 131906250 1 + C G rs16856546 131906246 + 131906226 131906266 41 ATGACCACGGGTCTGCTTTTCTCTCTGATCCTAGGGGACTT ATGACCACGGGTCTGCTTTTCTCTGTGATCCTAGGGGACTT < 41bp 1 0.588651599714076 1 0.562032461166382 experiment 0.822696800571848 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHB2 ENSG00000115762 UTR3 Human protein_coding chr2:131906246 chr2:131906250 . . 0 25 hm5C_associated_SNPs_3991 0 0 1 1 131906250 131906273 mRNA hsa-miR-505 PLEKHB2 miRanda miRanda
498 chr2 131906250 131906250 1 + C G rs16856546 131906248 + 131906228 131906268 41 GACCACGGGTCTGCTTTTCTCTCTGATCCTAGGGGACTTGT GACCACGGGTCTGCTTTTCTCTGTGATCCTAGGGGACTTGT < 41bp 1 0.707911310312896 1 0.25725656747818 experiment 0.584177379374207 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHB2 ENSG00000115762 UTR3 Human protein_coding chr2:131906248 chr2:131906250 . . 0 23 hm5C_associated_SNPs_3992 0 0 1 1 131906250 131906273 mRNA hsa-miR-505 PLEKHB2 miRanda miRanda
499 chr2 131906250 131906250 1 + C G rs16856546 131906255 + 131906235 131906275 41 GGTCTGCTTTTCTCTCTGATCCTAGGGGACTTGTTGACATG GGTCTGCTTTTCTCTGTGATCCTAGGGGACTTGTTGACATG < 41bp 1 0.265671565935996 1 0.392403036355972 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHB2 ENSG00000115762 UTR3 Human protein_coding chr2:131906255 chr2:131906250 . . 0 16 hm5C_associated_SNPs_3993 0 0 1 1 131906250 131906273 mRNA hsa-miR-505 PLEKHB2 miRanda miRanda
500 chr2 131906250 131906250 1 + C G rs16856546 131906256 + 131906236 131906276 41 GTCTGCTTTTCTCTCTGATCCTAGGGGACTTGTTGACATGG GTCTGCTTTTCTCTGTGATCCTAGGGGACTTGTTGACATGG < 41bp 1 0.692205032017063 1 0.509546279907227 experiment 0.615589935965874 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHB2 ENSG00000115762 UTR3 Human protein_coding chr2:131906256 chr2:131906250 . . 0 15 hm5C_associated_SNPs_3994 0 0 1 1 131906250 131906273 mRNA hsa-miR-505 PLEKHB2 miRanda miRanda
501 chr2 131906250 131906250 1 + C G rs16856546 131906264 + 131906244 131906284 41 TTCTCTCTGATCCTAGGGGACTTGTTGACATGGGAGTGTCT TTCTCTGTGATCCTAGGGGACTTGTTGACATGGGAGTGTCT < 41bp 1 0.240566731170908 1 0.0371639132499695 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHB2 ENSG00000115762 UTR3 Human protein_coding chr2:131906264 chr2:131906250 . . 0 7 hm5C_associated_SNPs_3995 0 0 1 1 131906250 131906273 mRNA hsa-miR-505 PLEKHB2 miRanda miRanda
502 chr2 153505714 153505714 1 + A G rs139450099 153505709 + 153505689 153505729 41 CTTGGTGAAGGTCCCTTTTCCTTGGATGTGTAGTTATATGA CTTGGTGAAGGTCCCTTTTCCTTGGGTGTGTAGTTATATGA < 41bp 1 0.449002993664431 1 0.27044090628624 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FMNL2 ENSG00000157827 UTR3 Human protein_coding chr2:153505709 chr2:153505714 . . 0 26 hm5C_associated_SNPs_4004 0 0 1 2 153505707 153505728 mRNA hsa-miR-410 FMNL2 miRanda miRanda
503 chr2 153505714 153505714 1 + A G rs139450099 153505709 + 153505689 153505729 41 CTTGGTGAAGGTCCCTTTTCCTTGGATGTGTAGTTATATGA CTTGGTGAAGGTCCCTTTTCCTTGGGTGTGTAGTTATATGA < 41bp 1 0.449002993664431 1 0.27044090628624 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FMNL2 ENSG00000157827 UTR3 Human protein_coding chr2:153505709 chr2:153505714 . . 0 26 hm5C_associated_SNPs_4004 0 0 1 2 153505707 153505727 mRNA hsa-miR-374b FMNL2 miRanda miRanda
504 chr2 157439561 157439561 1 + A G rs184834240 157439565 + 157439545 157439585 41 CACTAGAAAACATTCCAAAACTTTAAGGTGTTGGTGTATTT CACTAGAAAACATTCCGAAACTTTAAGGTGTTGGTGTATTT < 41bp 1 0.108438982773803 1 0.0760300159454346 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPD2 ENSG00000115159 UTR3 Human protein_coding chr2:157439565 chr2:157439561 . . 0 17 hm5C_associated_SNPs_4007 0 0 1 3 157439540 157439561 mRNA hsa-miR-1 GPD2 miRanda miRanda
505 chr2 157439561 157439561 1 + A G rs184834240 157439565 + 157439545 157439585 41 CACTAGAAAACATTCCAAAACTTTAAGGTGTTGGTGTATTT CACTAGAAAACATTCCGAAACTTTAAGGTGTTGGTGTATTT < 41bp 1 0.108438982773803 1 0.0760300159454346 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPD2 ENSG00000115159 UTR3 Human protein_coding chr2:157439565 chr2:157439561 . . 0 17 hm5C_associated_SNPs_4007 0 0 1 3 157439540 157439561 mRNA hsa-miR-206 GPD2 miRanda miRanda
506 chr2 157439561 157439561 1 + A G rs184834240 157439565 + 157439545 157439585 41 CACTAGAAAACATTCCAAAACTTTAAGGTGTTGGTGTATTT CACTAGAAAACATTCCGAAACTTTAAGGTGTTGGTGTATTT < 41bp 1 0.108438982773803 1 0.0760300159454346 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPD2 ENSG00000115159 UTR3 Human protein_coding chr2:157439565 chr2:157439561 . . 0 17 hm5C_associated_SNPs_4007 0 0 1 3 157439544 157439561 mRNA hsa-miR-613 GPD2 miRanda miRanda
507 chr2 203156096 203156096 1 + A G rs530919021 203156092 + 203156072 203156112 41 TTTACACTTATTGTTGTTCACCTGATAACATAAATATGAGG TTTACACTTATTGTTGTTCACCTGGTAACATAAATATGAGG < 41bp 1 0.185803173194322 1 0.0735887289047241 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD11B ENSG00000271852 ncRNA_exonic Human snoRNA chr2:203156092 chr2:203156096 . . 0 25 hm5C_associated_SNPs_4048 0 0 1 2 203156075 203156096 mRNA hsa-miR-125a-3p SNORD11B miRanda miRanda
508 chr2 203156096 203156096 1 + A G rs530919021 203156092 + 203156072 203156112 41 TTTACACTTATTGTTGTTCACCTGATAACATAAATATGAGG TTTACACTTATTGTTGTTCACCTGGTAACATAAATATGAGG < 41bp 1 0.185803173194322 1 0.0735887289047241 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD11B ENSG00000271852 ncRNA_exonic Human snoRNA chr2:203156092 chr2:203156096 . . 0 25 hm5C_associated_SNPs_4048 0 0 1 2 203156078 203156099 mRNA hsa-miR-361-5p SNORD11B miRanda miRanda
509 chr2 231912001 231912001 1 + A G rs146241761 231912019 + 231911999 231912039 41 TGAGCCACTGAGACAGATGGCTGTCCGCTTTGAGGCTCTGC TGGGCCACTGAGACAGATGGCTGTCCGCTTTGAGGCTCTGC < 41bp 1 0.110648837272191 1 0.0405034720897675 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C2orf72 ENSG00000204128 UTR3 Human protein_coding chr2:231912019 chr2:231912001 . . 0 3 hm5C_associated_SNPs_4143 0 0 1 1 231911984 231912005 mRNA hsa-miR-24 C2orf72 miRanda miRanda
510 chr3 5026638 5026638 1 + T C rs114360023 5026640 + 5026620 5026660 41 TATTAAAAAGGAAAATGTTTCAGATGTTTATTTGTATAATT TATTAAAAAGGAAAATGTCTCAGATGTTTATTTGTATAATT < 41bp 1 0.220811975823543 1 0.271274238824844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BHLHE40 ENSG00000134107 UTR3 Human protein_coding chr3:5026640 chr3:5026638 . . 0 19 hm5C_associated_SNPs_4198 0 0 1 10 5026630 5026651 mRNA hsa-miR-30a BHLHE40 miRanda miRanda
511 chr3 5026638 5026638 1 + T C rs114360023 5026640 + 5026620 5026660 41 TATTAAAAAGGAAAATGTTTCAGATGTTTATTTGTATAATT TATTAAAAAGGAAAATGTCTCAGATGTTTATTTGTATAATT < 41bp 1 0.220811975823543 1 0.271274238824844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BHLHE40 ENSG00000134107 UTR3 Human protein_coding chr3:5026640 chr3:5026638 . . 0 19 hm5C_associated_SNPs_4198 0 0 1 10 5026629 5026651 mRNA hsa-miR-30c BHLHE40 miRanda miRanda
512 chr3 5026638 5026638 1 + T C rs114360023 5026640 + 5026620 5026660 41 TATTAAAAAGGAAAATGTTTCAGATGTTTATTTGTATAATT TATTAAAAAGGAAAATGTCTCAGATGTTTATTTGTATAATT < 41bp 1 0.220811975823543 1 0.271274238824844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BHLHE40 ENSG00000134107 UTR3 Human protein_coding chr3:5026640 chr3:5026638 . . 0 19 hm5C_associated_SNPs_4198 0 0 1 10 5026630 5026651 mRNA hsa-miR-30d BHLHE40 miRanda miRanda
513 chr3 5026638 5026638 1 + T C rs114360023 5026640 + 5026620 5026660 41 TATTAAAAAGGAAAATGTTTCAGATGTTTATTTGTATAATT TATTAAAAAGGAAAATGTCTCAGATGTTTATTTGTATAATT < 41bp 1 0.220811975823543 1 0.271274238824844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BHLHE40 ENSG00000134107 UTR3 Human protein_coding chr3:5026640 chr3:5026638 . . 0 19 hm5C_associated_SNPs_4198 0 0 1 10 5026630 5026651 mRNA hsa-miR-30b BHLHE40 miRanda miRanda
514 chr3 5026638 5026638 1 + T C rs114360023 5026640 + 5026620 5026660 41 TATTAAAAAGGAAAATGTTTCAGATGTTTATTTGTATAATT TATTAAAAAGGAAAATGTCTCAGATGTTTATTTGTATAATT < 41bp 1 0.220811975823543 1 0.271274238824844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BHLHE40 ENSG00000134107 UTR3 Human protein_coding chr3:5026640 chr3:5026638 . . 0 19 hm5C_associated_SNPs_4198 0 0 1 10 5026630 5026651 mRNA hsa-miR-30e BHLHE40 miRanda miRanda
515 chr3 5026638 5026638 1 + T C rs114360023 5026640 + 5026620 5026660 41 TATTAAAAAGGAAAATGTTTCAGATGTTTATTTGTATAATT TATTAAAAAGGAAAATGTCTCAGATGTTTATTTGTATAATT < 41bp 1 0.220811975823543 1 0.271274238824844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BHLHE40 ENSG00000134107 UTR3 Human protein_coding chr3:5026640 chr3:5026638 . . 0 19 hm5C_associated_SNPs_4198 0 0 1 10 5026637 5026657 mRNA hsa-miR-381 BHLHE40 miRanda miRanda
516 chr3 5026638 5026638 1 + T C rs114360023 5026640 + 5026620 5026660 41 TATTAAAAAGGAAAATGTTTCAGATGTTTATTTGTATAATT TATTAAAAAGGAAAATGTCTCAGATGTTTATTTGTATAATT < 41bp 1 0.220811975823543 1 0.271274238824844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BHLHE40 ENSG00000134107 UTR3 Human protein_coding chr3:5026640 chr3:5026638 . . 0 19 hm5C_associated_SNPs_4198 0 0 1 10 5026620 5026641 mRNA hsa-miR-494 BHLHE40 miRanda miRanda
517 chr3 5026638 5026638 1 + T C rs114360023 5026640 + 5026620 5026660 41 TATTAAAAAGGAAAATGTTTCAGATGTTTATTTGTATAATT TATTAAAAAGGAAAATGTCTCAGATGTTTATTTGTATAATT < 41bp 1 0.220811975823543 1 0.271274238824844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BHLHE40 ENSG00000134107 UTR3 Human protein_coding chr3:5026640 chr3:5026638 . . 0 19 hm5C_associated_SNPs_4198 0 0 1 10 5026633 5026650 mRNA hsa-miR-494 BHLHE40 miRanda miRanda
518 chr3 5026638 5026638 1 + T C rs114360023 5026640 + 5026620 5026660 41 TATTAAAAAGGAAAATGTTTCAGATGTTTATTTGTATAATT TATTAAAAAGGAAAATGTCTCAGATGTTTATTTGTATAATT < 41bp 1 0.220811975823543 1 0.271274238824844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BHLHE40 ENSG00000134107 UTR3 Human protein_coding chr3:5026640 chr3:5026638 . . 0 19 hm5C_associated_SNPs_4198 0 0 1 10 5026637 5026657 mRNA hsa-miR-300 BHLHE40 miRanda miRanda
519 chr3 5026638 5026638 1 + T C rs114360023 5026640 + 5026620 5026660 41 TATTAAAAAGGAAAATGTTTCAGATGTTTATTTGTATAATT TATTAAAAAGGAAAATGTCTCAGATGTTTATTTGTATAATT < 41bp 1 0.220811975823543 1 0.271274238824844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BHLHE40 ENSG00000134107 UTR3 Human protein_coding chr3:5026640 chr3:5026638 . . 0 19 hm5C_associated_SNPs_4198 0 0 1 10 5026618 5026639 mRNA hsa-miR-543 BHLHE40 miRanda miRanda
520 chr3 9517870 9517870 1 + G A rs529596973 9517850 + 9517830 9517870 41 GCTGCCTCTGGAACCTAGGCCGAGCATATTGCTGAGGAACG GCTGCCTCTGGAACCTAGGCCGAGCATATTGCTGAGGAACA < 41bp 1 0.381247692037853 1 0.433860510587692 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SETD5 ENSG00000168137 UTR3 Human protein_coding chr3:9517850 chr3:9517870 . . 0 41 hm5C_associated_SNPs_4214 0 0 1 1 9517867 9517888 mRNA hsa-miR-328 SETD5 miRanda miRanda
521 chr3 10143189 10143189 1 + C T rs552573592 10143190 + 10143170 10143210 41 AGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACGAC AGCGATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGACGAC < 41bp 1 0.377671384512054 1 0.80147123336792 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FANCD2 ENSG00000144554 UTR3 Human protein_coding chr3:10143190 chr3:10143189 . . 0 20 hm5C_associated_SNPs_4221 0 0 1 1 10143172 10143193 mRNA hsa-miR-485-5p FANCD2 miRanda miRanda
522 chr3 10143189 10143189 1 + C T rs552573592 10143192 + 10143172 10143212 41 CGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACGACAG CGATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGACGACAG < 41bp 1 0.477930427506577 1 0.356123507022858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control FANCD2 ENSG00000144554 UTR3 Human protein_coding chr3:10143192 chr3:10143189 . . 0 18 hm5C_associated_SNPs_4222 0 0 1 1 10143172 10143193 mRNA hsa-miR-485-5p FANCD2 miRanda miRanda
523 chr3 10143189 10143189 1 + C T rs552573592 10143193 + 10143173 10143213 41 GATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACGACAGG GATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGACGACAGG < 41bp 1 0.525375101721251 1 0.382387489080429 experiment 0.949249796557497 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control FANCD2 ENSG00000144554 UTR3 Human protein_coding chr3:10143193 chr3:10143189 . . 0 17 hm5C_associated_SNPs_4223 0 0 1 1 10143172 10143193 mRNA hsa-miR-485-5p FANCD2 miRanda miRanda
524 chr3 10143189 10143189 1 + C T rs552573592 10143201 + 10143181 10143221 41 TGCCTCAGCCTCCTGAGTAGCTGGGACGACAGGCACATGCC TGCCTCAGTCTCCTGAGTAGCTGGGACGACAGGCACATGCC < 41bp 1 0.758945771022461 1 0.768702507019043 experiment 0.482108457955079 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control FANCD2 ENSG00000144554 UTR3 Human protein_coding chr3:10143201 chr3:10143189 . . 0 9 hm5C_associated_SNPs_4224 0 0 1 1 10143172 10143193 mRNA hsa-miR-485-5p FANCD2 miRanda miRanda
525 chr3 10284952 10284952 1 + C T rs374774009 10284961 + 10284941 10284981 41 ACTACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGT ACTACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGT < 41bp 1 0.324472801062756 1 0.0582112967967987 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284961 chr3:10284952 . . 0 12 hm5C_associated_SNPs_4254 0 0 1 8 10284931 10284953 mRNA hsa-let-7a IRAK2 miRanda miRanda
526 chr3 10284952 10284952 1 + C T rs374774009 10284961 + 10284941 10284981 41 ACTACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGT ACTACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGT < 41bp 1 0.324472801062756 1 0.0582112967967987 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284961 chr3:10284952 . . 0 12 hm5C_associated_SNPs_4254 0 0 1 8 10284931 10284953 mRNA hsa-let-7b IRAK2 miRanda miRanda
527 chr3 10284952 10284952 1 + C T rs374774009 10284961 + 10284941 10284981 41 ACTACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGT ACTACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGT < 41bp 1 0.324472801062756 1 0.0582112967967987 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284961 chr3:10284952 . . 0 12 hm5C_associated_SNPs_4254 0 0 1 8 10284931 10284953 mRNA hsa-let-7c IRAK2 miRanda miRanda
528 chr3 10284952 10284952 1 + C T rs374774009 10284961 + 10284941 10284981 41 ACTACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGT ACTACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGT < 41bp 1 0.324472801062756 1 0.0582112967967987 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284961 chr3:10284952 . . 0 12 hm5C_associated_SNPs_4254 0 0 1 8 10284931 10284953 mRNA hsa-let-7d IRAK2 miRanda miRanda
529 chr3 10284952 10284952 1 + C T rs374774009 10284961 + 10284941 10284981 41 ACTACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGT ACTACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGT < 41bp 1 0.324472801062756 1 0.0582112967967987 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284961 chr3:10284952 . . 0 12 hm5C_associated_SNPs_4254 0 0 1 8 10284931 10284953 mRNA hsa-let-7f IRAK2 miRanda miRanda
530 chr3 10284952 10284952 1 + C T rs374774009 10284961 + 10284941 10284981 41 ACTACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGT ACTACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGT < 41bp 1 0.324472801062756 1 0.0582112967967987 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284961 chr3:10284952 . . 0 12 hm5C_associated_SNPs_4254 0 0 1 8 10284932 10284953 mRNA hsa-miR-98 IRAK2 miRanda miRanda
531 chr3 10284952 10284952 1 + C T rs374774009 10284961 + 10284941 10284981 41 ACTACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGT ACTACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGT < 41bp 1 0.324472801062756 1 0.0582112967967987 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284961 chr3:10284952 . . 0 12 hm5C_associated_SNPs_4254 0 0 1 8 10284931 10284953 mRNA hsa-let-7g IRAK2 miRanda miRanda
532 chr3 10284952 10284952 1 + C T rs374774009 10284961 + 10284941 10284981 41 ACTACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGT ACTACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGT < 41bp 1 0.324472801062756 1 0.0582112967967987 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284961 chr3:10284952 . . 0 12 hm5C_associated_SNPs_4254 0 0 1 8 10284931 10284953 mRNA hsa-let-7i IRAK2 miRanda miRanda
533 chr3 10284952 10284952 1 + C T rs374774009 10284963 + 10284943 10284983 41 TACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGT TACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGT < 41bp 1 0.414165181658649 1 0.19049996137619 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284963 chr3:10284952 . . 0 10 hm5C_associated_SNPs_4255 0 0 1 8 10284931 10284953 mRNA hsa-let-7a IRAK2 miRanda miRanda
534 chr3 10284952 10284952 1 + C T rs374774009 10284963 + 10284943 10284983 41 TACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGT TACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGT < 41bp 1 0.414165181658649 1 0.19049996137619 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284963 chr3:10284952 . . 0 10 hm5C_associated_SNPs_4255 0 0 1 8 10284931 10284953 mRNA hsa-let-7b IRAK2 miRanda miRanda
535 chr3 10284952 10284952 1 + C T rs374774009 10284963 + 10284943 10284983 41 TACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGT TACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGT < 41bp 1 0.414165181658649 1 0.19049996137619 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284963 chr3:10284952 . . 0 10 hm5C_associated_SNPs_4255 0 0 1 8 10284931 10284953 mRNA hsa-let-7c IRAK2 miRanda miRanda
536 chr3 10284952 10284952 1 + C T rs374774009 10284963 + 10284943 10284983 41 TACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGT TACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGT < 41bp 1 0.414165181658649 1 0.19049996137619 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284963 chr3:10284952 . . 0 10 hm5C_associated_SNPs_4255 0 0 1 8 10284931 10284953 mRNA hsa-let-7d IRAK2 miRanda miRanda
537 chr3 10284952 10284952 1 + C T rs374774009 10284963 + 10284943 10284983 41 TACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGT TACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGT < 41bp 1 0.414165181658649 1 0.19049996137619 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284963 chr3:10284952 . . 0 10 hm5C_associated_SNPs_4255 0 0 1 8 10284931 10284953 mRNA hsa-let-7f IRAK2 miRanda miRanda
538 chr3 10284952 10284952 1 + C T rs374774009 10284963 + 10284943 10284983 41 TACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGT TACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGT < 41bp 1 0.414165181658649 1 0.19049996137619 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284963 chr3:10284952 . . 0 10 hm5C_associated_SNPs_4255 0 0 1 8 10284932 10284953 mRNA hsa-miR-98 IRAK2 miRanda miRanda
539 chr3 10284952 10284952 1 + C T rs374774009 10284963 + 10284943 10284983 41 TACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGT TACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGT < 41bp 1 0.414165181658649 1 0.19049996137619 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284963 chr3:10284952 . . 0 10 hm5C_associated_SNPs_4255 0 0 1 8 10284931 10284953 mRNA hsa-let-7g IRAK2 miRanda miRanda
540 chr3 10284952 10284952 1 + C T rs374774009 10284963 + 10284943 10284983 41 TACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGT TACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGT < 41bp 1 0.414165181658649 1 0.19049996137619 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284963 chr3:10284952 . . 0 10 hm5C_associated_SNPs_4255 0 0 1 8 10284931 10284953 mRNA hsa-let-7i IRAK2 miRanda miRanda
541 chr3 10284952 10284952 1 + C T rs374774009 10284965 + 10284945 10284985 41 CTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG CTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG < 41bp 1 0.0913680311330152 1 0.0911275446414948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284965 chr3:10284952 . . 0 8 hm5C_associated_SNPs_4256 0 0 1 8 10284931 10284953 mRNA hsa-let-7a IRAK2 miRanda miRanda
542 chr3 10284952 10284952 1 + C T rs374774009 10284965 + 10284945 10284985 41 CTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG CTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG < 41bp 1 0.0913680311330152 1 0.0911275446414948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284965 chr3:10284952 . . 0 8 hm5C_associated_SNPs_4256 0 0 1 8 10284931 10284953 mRNA hsa-let-7b IRAK2 miRanda miRanda
543 chr3 10284952 10284952 1 + C T rs374774009 10284965 + 10284945 10284985 41 CTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG CTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG < 41bp 1 0.0913680311330152 1 0.0911275446414948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284965 chr3:10284952 . . 0 8 hm5C_associated_SNPs_4256 0 0 1 8 10284931 10284953 mRNA hsa-let-7c IRAK2 miRanda miRanda
544 chr3 10284952 10284952 1 + C T rs374774009 10284965 + 10284945 10284985 41 CTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG CTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG < 41bp 1 0.0913680311330152 1 0.0911275446414948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284965 chr3:10284952 . . 0 8 hm5C_associated_SNPs_4256 0 0 1 8 10284931 10284953 mRNA hsa-let-7d IRAK2 miRanda miRanda
545 chr3 10284952 10284952 1 + C T rs374774009 10284965 + 10284945 10284985 41 CTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG CTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG < 41bp 1 0.0913680311330152 1 0.0911275446414948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284965 chr3:10284952 . . 0 8 hm5C_associated_SNPs_4256 0 0 1 8 10284931 10284953 mRNA hsa-let-7f IRAK2 miRanda miRanda
546 chr3 10284952 10284952 1 + C T rs374774009 10284965 + 10284945 10284985 41 CTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG CTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG < 41bp 1 0.0913680311330152 1 0.0911275446414948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284965 chr3:10284952 . . 0 8 hm5C_associated_SNPs_4256 0 0 1 8 10284932 10284953 mRNA hsa-miR-98 IRAK2 miRanda miRanda
547 chr3 10284952 10284952 1 + C T rs374774009 10284965 + 10284945 10284985 41 CTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG CTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG < 41bp 1 0.0913680311330152 1 0.0911275446414948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284965 chr3:10284952 . . 0 8 hm5C_associated_SNPs_4256 0 0 1 8 10284931 10284953 mRNA hsa-let-7g IRAK2 miRanda miRanda
548 chr3 10284952 10284952 1 + C T rs374774009 10284965 + 10284945 10284985 41 CTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG CTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG < 41bp 1 0.0913680311330152 1 0.0911275446414948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284965 chr3:10284952 . . 0 8 hm5C_associated_SNPs_4256 0 0 1 8 10284931 10284953 mRNA hsa-let-7i IRAK2 miRanda miRanda
549 chr3 10284952 10284952 1 + C T rs374774009 10284966 + 10284946 10284986 41 TGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG TGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG < 41bp 1 0.254573523855758 1 0.0498310029506683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284966 chr3:10284952 . . 0 7 hm5C_associated_SNPs_4257 0 0 1 8 10284931 10284953 mRNA hsa-let-7a IRAK2 miRanda miRanda
550 chr3 10284952 10284952 1 + C T rs374774009 10284966 + 10284946 10284986 41 TGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG TGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG < 41bp 1 0.254573523855758 1 0.0498310029506683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284966 chr3:10284952 . . 0 7 hm5C_associated_SNPs_4257 0 0 1 8 10284931 10284953 mRNA hsa-let-7b IRAK2 miRanda miRanda
551 chr3 10284952 10284952 1 + C T rs374774009 10284966 + 10284946 10284986 41 TGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG TGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG < 41bp 1 0.254573523855758 1 0.0498310029506683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284966 chr3:10284952 . . 0 7 hm5C_associated_SNPs_4257 0 0 1 8 10284931 10284953 mRNA hsa-let-7c IRAK2 miRanda miRanda
552 chr3 10284952 10284952 1 + C T rs374774009 10284966 + 10284946 10284986 41 TGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG TGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG < 41bp 1 0.254573523855758 1 0.0498310029506683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284966 chr3:10284952 . . 0 7 hm5C_associated_SNPs_4257 0 0 1 8 10284931 10284953 mRNA hsa-let-7d IRAK2 miRanda miRanda
553 chr3 10284952 10284952 1 + C T rs374774009 10284966 + 10284946 10284986 41 TGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG TGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG < 41bp 1 0.254573523855758 1 0.0498310029506683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284966 chr3:10284952 . . 0 7 hm5C_associated_SNPs_4257 0 0 1 8 10284931 10284953 mRNA hsa-let-7f IRAK2 miRanda miRanda
554 chr3 10284952 10284952 1 + C T rs374774009 10284966 + 10284946 10284986 41 TGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG TGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG < 41bp 1 0.254573523855758 1 0.0498310029506683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284966 chr3:10284952 . . 0 7 hm5C_associated_SNPs_4257 0 0 1 8 10284932 10284953 mRNA hsa-miR-98 IRAK2 miRanda miRanda
555 chr3 10284952 10284952 1 + C T rs374774009 10284966 + 10284946 10284986 41 TGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG TGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG < 41bp 1 0.254573523855758 1 0.0498310029506683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284966 chr3:10284952 . . 0 7 hm5C_associated_SNPs_4257 0 0 1 8 10284931 10284953 mRNA hsa-let-7g IRAK2 miRanda miRanda
556 chr3 10284952 10284952 1 + C T rs374774009 10284966 + 10284946 10284986 41 TGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG TGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG < 41bp 1 0.254573523855758 1 0.0498310029506683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284966 chr3:10284952 . . 0 7 hm5C_associated_SNPs_4257 0 0 1 8 10284931 10284953 mRNA hsa-let-7i IRAK2 miRanda miRanda
557 chr3 14184719 14184719 1 + T C rs10468 14184725 + 14184705 14184745 41 ATTCAGAAACCGTTTTGTGCCTGCTGGGAGTAATTCCTTTA ATTCAGAAACCGTTCTGTGCCTGCTGGGAGTAATTCCTTTA < 41bp 1 0.557516844888741 1 0.0776461362838745 experiment 0.884966310222517 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM43 ENSG00000170876 UTR3 Human protein_coding chr3:14184725 chr3:14184719 . . 0 15 hm5C_associated_SNPs_4271 2 0 1 5 14184708 14184730 mRNA hsa-miR-15a TMEM43 miRanda miRanda
558 chr3 14184719 14184719 1 + T C rs10468 14184725 + 14184705 14184745 41 ATTCAGAAACCGTTTTGTGCCTGCTGGGAGTAATTCCTTTA ATTCAGAAACCGTTCTGTGCCTGCTGGGAGTAATTCCTTTA < 41bp 1 0.557516844888741 1 0.0776461362838745 experiment 0.884966310222517 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM43 ENSG00000170876 UTR3 Human protein_coding chr3:14184725 chr3:14184719 . . 0 15 hm5C_associated_SNPs_4271 2 0 1 5 14184710 14184731 mRNA hsa-miR-214 TMEM43 miRanda miRanda
559 chr3 14184719 14184719 1 + T C rs10468 14184725 + 14184705 14184745 41 ATTCAGAAACCGTTTTGTGCCTGCTGGGAGTAATTCCTTTA ATTCAGAAACCGTTCTGTGCCTGCTGGGAGTAATTCCTTTA < 41bp 1 0.557516844888741 1 0.0776461362838745 experiment 0.884966310222517 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM43 ENSG00000170876 UTR3 Human protein_coding chr3:14184725 chr3:14184719 . . 0 15 hm5C_associated_SNPs_4271 2 0 1 5 14184708 14184730 mRNA hsa-miR-15b TMEM43 miRanda miRanda
560 chr3 14184719 14184719 1 + T C rs10468 14184725 + 14184705 14184745 41 ATTCAGAAACCGTTTTGTGCCTGCTGGGAGTAATTCCTTTA ATTCAGAAACCGTTCTGTGCCTGCTGGGAGTAATTCCTTTA < 41bp 1 0.557516844888741 1 0.0776461362838745 experiment 0.884966310222517 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM43 ENSG00000170876 UTR3 Human protein_coding chr3:14184725 chr3:14184719 . . 0 15 hm5C_associated_SNPs_4271 2 0 1 5 14184709 14184730 mRNA hsa-miR-195 TMEM43 miRanda miRanda
561 chr3 14184719 14184719 1 + T C rs10468 14184725 + 14184705 14184745 41 ATTCAGAAACCGTTTTGTGCCTGCTGGGAGTAATTCCTTTA ATTCAGAAACCGTTCTGTGCCTGCTGGGAGTAATTCCTTTA < 41bp 1 0.557516844888741 1 0.0776461362838745 experiment 0.884966310222517 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM43 ENSG00000170876 UTR3 Human protein_coding chr3:14184725 chr3:14184719 . . 0 15 hm5C_associated_SNPs_4271 2 0 1 5 14184709 14184730 mRNA hsa-miR-497 TMEM43 miRanda miRanda
562 chr3 14487265 14487265 1 + C T rs2228585 14487269 + 14487249 14487289 41 TTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTTGGAG TTTTCCTGTTTGGGAGTGGCCTGCCTGTGTTTTTCTTGGAG < 41bp 1 0.360936050271627 1 0.188533633947372 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487269 chr3:14487265 synonymous SNV . 0 17 hm5C_associated_SNPs_4272 0 0 1 1 14487244 14487265 mRNA hsa-miR-150 SLC6A6 miRanda miRanda
563 chr3 15297570 15297570 1 - C A rs140402906 15297574 - 15297554 15297594 41 GATTCATCCTGGGCCCTGGCCGATGTGCATATCAACATTTA GATTCATCCTGGGCCCTGGCCGATTTGCATATCAACATTTA < 41bp 1 0.13577204427386 1 0.0441830456256866 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP5-AS1 ENSG00000224660 ncRNA_exonic Human antisense chr3:15297574 chr3:15297570 . . 0 25 hm5C_associated_SNPs_4290 0 0 1 5 15297562 15297585 mRNA hsa-miR-92a SH3BP5 miRanda miRanda
564 chr3 15297570 15297570 1 - C A rs140402906 15297574 - 15297554 15297594 41 GATTCATCCTGGGCCCTGGCCGATGTGCATATCAACATTTA GATTCATCCTGGGCCCTGGCCGATTTGCATATCAACATTTA < 41bp 1 0.13577204427386 1 0.0441830456256866 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP5-AS1 ENSG00000224660 ncRNA_exonic Human antisense chr3:15297574 chr3:15297570 . . 0 25 hm5C_associated_SNPs_4290 0 0 1 5 15297561 15297581 mRNA hsa-miR-190 SH3BP5 miRanda miRanda
565 chr3 15297570 15297570 1 - C A rs140402906 15297574 - 15297554 15297594 41 GATTCATCCTGGGCCCTGGCCGATGTGCATATCAACATTTA GATTCATCCTGGGCCCTGGCCGATTTGCATATCAACATTTA < 41bp 1 0.13577204427386 1 0.0441830456256866 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP5-AS1 ENSG00000224660 ncRNA_exonic Human antisense chr3:15297574 chr3:15297570 . . 0 25 hm5C_associated_SNPs_4290 0 0 1 5 15297562 15297584 mRNA hsa-miR-367 SH3BP5 miRanda miRanda
566 chr3 15297570 15297570 1 - C A rs140402906 15297574 - 15297554 15297594 41 GATTCATCCTGGGCCCTGGCCGATGTGCATATCAACATTTA GATTCATCCTGGGCCCTGGCCGATTTGCATATCAACATTTA < 41bp 1 0.13577204427386 1 0.0441830456256866 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP5-AS1 ENSG00000224660 ncRNA_exonic Human antisense chr3:15297574 chr3:15297570 . . 0 25 hm5C_associated_SNPs_4290 0 0 1 5 15297562 15297585 mRNA hsa-miR-92b SH3BP5 miRanda miRanda
567 chr3 15297570 15297570 1 - C A rs140402906 15297574 - 15297554 15297594 41 GATTCATCCTGGGCCCTGGCCGATGTGCATATCAACATTTA GATTCATCCTGGGCCCTGGCCGATTTGCATATCAACATTTA < 41bp 1 0.13577204427386 1 0.0441830456256866 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP5-AS1 ENSG00000224660 ncRNA_exonic Human antisense chr3:15297574 chr3:15297570 . . 0 25 hm5C_associated_SNPs_4290 0 0 1 5 15297561 15297578 mRNA hsa-miR-190b SH3BP5 miRanda miRanda
568 chr3 20019806 20019806 1 + C T rs200242114 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GTACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA < 41bp 1 0.465192667060081 1 0.120863735675812 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019806 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_4293 0 0 1 2 20019802 20019810 mRNA hsa-miR-218 RAB5A miRanda miRanda
569 chr3 20019806 20019806 1 + C T rs200242114 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GTACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA < 41bp 1 0.465192667060081 1 0.120863735675812 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019806 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_4293 0 0 1 2 20019802 20019820 mRNA hsa-miR-153 RAB5A miRanda miRanda
570 chr3 23963201 23963201 1 + G A rs368292611 23963186 + 23963166 23963206 41 AGCAATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTAC AGCAATTCTTCTGCCTCGGCCTCCCAAATAGCCAGAACTAC < 41bp 1 0.241877585033707 1 0.240860432386398 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963186 chr3:23963201 . . 0 36 hm5C_associated_SNPs_4300 0 0 0 4 23963193 23963221 mRNA hsa-miR-34a RPL15 miRanda miRanda
571 chr3 23963201 23963201 1 + G A rs368292611 23963186 + 23963166 23963206 41 AGCAATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTAC AGCAATTCTTCTGCCTCGGCCTCCCAAATAGCCAGAACTAC < 41bp 1 0.241877585033707 1 0.240860432386398 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963186 chr3:23963201 . . 0 36 hm5C_associated_SNPs_4300 0 0 0 4 23963199 23963221 mRNA hsa-miR-34c-5p RPL15 miRanda miRanda
572 chr3 23963201 23963201 1 + G A rs368292611 23963186 + 23963166 23963206 41 AGCAATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTAC AGCAATTCTTCTGCCTCGGCCTCCCAAATAGCCAGAACTAC < 41bp 1 0.241877585033707 1 0.240860432386398 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963186 chr3:23963201 . . 0 36 hm5C_associated_SNPs_4300 0 0 0 4 23963200 23963221 mRNA hsa-miR-449a RPL15 miRanda miRanda
573 chr3 23963201 23963201 1 + G A rs368292611 23963186 + 23963166 23963206 41 AGCAATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTAC AGCAATTCTTCTGCCTCGGCCTCCCAAATAGCCAGAACTAC < 41bp 1 0.241877585033707 1 0.240860432386398 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963186 chr3:23963201 . . 0 36 hm5C_associated_SNPs_4300 0 0 0 4 23963200 23963221 mRNA hsa-miR-449b RPL15 miRanda miRanda
574 chr3 23963201 23963201 1 + G A rs368292611 23963189 + 23963169 23963209 41 AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGG AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGAACTACAGG < 41bp 1 0.369167019391489 1 0.582080006599426 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963189 chr3:23963201 . . 0 33 hm5C_associated_SNPs_4301 0 0 0 4 23963193 23963221 mRNA hsa-miR-34a RPL15 miRanda miRanda
575 chr3 23963201 23963201 1 + G A rs368292611 23963189 + 23963169 23963209 41 AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGG AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGAACTACAGG < 41bp 1 0.369167019391489 1 0.582080006599426 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963189 chr3:23963201 . . 0 33 hm5C_associated_SNPs_4301 0 0 0 4 23963199 23963221 mRNA hsa-miR-34c-5p RPL15 miRanda miRanda
576 chr3 23963201 23963201 1 + G A rs368292611 23963189 + 23963169 23963209 41 AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGG AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGAACTACAGG < 41bp 1 0.369167019391489 1 0.582080006599426 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963189 chr3:23963201 . . 0 33 hm5C_associated_SNPs_4301 0 0 0 4 23963200 23963221 mRNA hsa-miR-449a RPL15 miRanda miRanda
577 chr3 23963201 23963201 1 + G A rs368292611 23963189 + 23963169 23963209 41 AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGG AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGAACTACAGG < 41bp 1 0.369167019391489 1 0.582080006599426 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963189 chr3:23963201 . . 0 33 hm5C_associated_SNPs_4301 0 0 0 4 23963200 23963221 mRNA hsa-miR-449b RPL15 miRanda miRanda
578 chr3 23963209 23963209 1 + G A rs372263565 23963189 + 23963169 23963209 41 AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGG AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGA < 41bp 1 0.351629638504229 1 0.4553182721138 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963189 chr3:23963209 . . 0 41 hm5C_associated_SNPs_4302 0 0 0 4 23963193 23963221 mRNA hsa-miR-34a RPL15 miRanda miRanda
579 chr3 23963209 23963209 1 + G A rs372263565 23963189 + 23963169 23963209 41 AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGG AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGA < 41bp 1 0.351629638504229 1 0.4553182721138 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963189 chr3:23963209 . . 0 41 hm5C_associated_SNPs_4302 0 0 0 4 23963199 23963221 mRNA hsa-miR-34c-5p RPL15 miRanda miRanda
580 chr3 23963209 23963209 1 + G A rs372263565 23963189 + 23963169 23963209 41 AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGG AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGA < 41bp 1 0.351629638504229 1 0.4553182721138 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963189 chr3:23963209 . . 0 41 hm5C_associated_SNPs_4302 0 0 0 4 23963200 23963221 mRNA hsa-miR-449a RPL15 miRanda miRanda
581 chr3 23963209 23963209 1 + G A rs372263565 23963189 + 23963169 23963209 41 AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGG AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGA < 41bp 1 0.351629638504229 1 0.4553182721138 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963189 chr3:23963209 . . 0 41 hm5C_associated_SNPs_4302 0 0 0 4 23963200 23963221 mRNA hsa-miR-449b RPL15 miRanda miRanda
582 chr3 33183947 33183947 1 + G A rs145383822 33183934 + 33183914 33183954 41 CTCTTGGAACTGGAGGAGACCAGCTAGCCCACAGCAACCAA CTCTTGGAACTGGAGGAGACCAGCTAGCCCACAACAACCAA < 41bp 1 0.390905819395777 1 0.14238053560257 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTAP ENSG00000170275 UTR3 Human protein_coding chr3:33183934 chr3:33183947 . . 0 34 hm5C_associated_SNPs_4312 0 0 1 1 33183941 33183957 mRNA hsa-miR-9 CRTAP miRanda miRanda
583 chr3 39452676 39452676 1 + G C rs139033405 39452660 + 39452640 39452680 41 ACACCACAAGGGTCTCTGGCCCAATGAGTGGAGTTTGATAG ACACCACAAGGGTCTCTGGCCCAATGAGTGGAGTTTCATAG < 41bp 1 0.0825082664366375 1 0.0682356357574463 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA62 ENSG00000202363 ncRNA_exonic Human snoRNA chr3:39452660 chr3:39452676 . . 0 37 hm5C_associated_SNPs_4337 0 0 1 1 39452670 39452692 mRNA hsa-miR-31 SNORA62 miRanda miRanda
584 chr3 39452676 39452676 1 + G C rs139033405 39452690 + 39452670 39452710 41 GAGTTTGATAGTAATTCTTGCTACAAGTATAACATTACTGC GAGTTTCATAGTAATTCTTGCTACAAGTATAACATTACTGC < 41bp 1 0.251580322075807 1 0.524475276470184 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA62 ENSG00000202363 ncRNA_exonic Human snoRNA chr3:39452690 chr3:39452676 . . 0 7 hm5C_associated_SNPs_4338 0 0 1 1 39452670 39452692 mRNA hsa-miR-31 SNORA62 miRanda miRanda
585 chr3 39452676 39452676 1 + G C rs139033405 39452693 + 39452673 39452713 41 TTTGATAGTAATTCTTGCTACAAGTATAACATTACTGCATG TTTCATAGTAATTCTTGCTACAAGTATAACATTACTGCATG < 41bp 1 0.326370630110404 1 0.36085045337677 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA62 ENSG00000202363 ncRNA_exonic Human snoRNA chr3:39452693 chr3:39452676 . . 0 4 hm5C_associated_SNPs_4339 0 0 1 1 39452670 39452692 mRNA hsa-miR-31 SNORA62 miRanda miRanda
586 chr3 49021773 49021773 1 + A C rs143241623 49021771 + 49021751 49021791 41 GCATGGGGGCTGTGTTTGCACAAGTTATTTTCATGTTACCT GCATGGGGGCTGTGTTTGCACACGTTATTTTCATGTTACCT < 41bp 1 0.675124467187025 1 0.137365162372589 experiment 0.649751065625949 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARIH2 ENSG00000177479 UTR3 Human protein_coding chr3:49021771 chr3:49021773 . . 0 23 hm5C_associated_SNPs_4392 0 0 1 3 49021750 49021774 mRNA hsa-miR-182 ARIH2 miRanda miRanda
587 chr3 49021773 49021773 1 + A C rs143241623 49021771 + 49021751 49021791 41 GCATGGGGGCTGTGTTTGCACAAGTTATTTTCATGTTACCT GCATGGGGGCTGTGTTTGCACACGTTATTTTCATGTTACCT < 41bp 1 0.675124467187025 1 0.137365162372589 experiment 0.649751065625949 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARIH2 ENSG00000177479 UTR3 Human protein_coding chr3:49021771 chr3:49021773 . . 0 23 hm5C_associated_SNPs_4392 0 0 1 3 49021767 49021790 mRNA hsa-miR-194 ARIH2 miRanda miRanda
588 chr3 49021773 49021773 1 + A C rs143241623 49021771 + 49021751 49021791 41 GCATGGGGGCTGTGTTTGCACAAGTTATTTTCATGTTACCT GCATGGGGGCTGTGTTTGCACACGTTATTTTCATGTTACCT < 41bp 1 0.675124467187025 1 0.137365162372589 experiment 0.649751065625949 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARIH2 ENSG00000177479 UTR3 Human protein_coding chr3:49021771 chr3:49021773 . . 0 23 hm5C_associated_SNPs_4392 0 0 1 3 49021772 49021793 mRNA hsa-miR-873 ARIH2 miRanda miRanda
589 chr3 49053338 49053338 1 + C A rs199567076 49053336 + 49053316 49053356 41 AGACTGAGTCACTGGCCCATCTCTTTGCTCTTGTGCCCCAG AGACTGAGTCACTGGCCCATCTATTTGCTCTTGTGCCCCAG < 41bp 1 0.415733805390675 1 0.206013709306717 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR6 ENSG00000178149 CDS Human protein_coding chr3:49053336 chr3:49053338 nonsynonymous SNV 0.240 1 23 hm5C_associated_SNPs_4394 0 0 1 1 49053327 49053349 mRNA hsa-miR-335 WDR6 miRanda miRanda
590 chr3 49453180 49453180 1 + C T rs141422153 49453181 + 49453161 49453201 41 CACTATCCAGATGGAGGCACCAAACACCCACATACCTGGCC CACTATCCAGATGGAGGCATCAAACACCCACATACCTGGCC < 41bp 1 0.407284787744755 1 0.496783375740051 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TCTA ENSG00000145022 UTR3 Human protein_coding chr3:49453181 chr3:49453180 . . 0 20 hm5C_associated_SNPs_4395 0 0 1 1 49453174 49453194 mRNA hsa-miR-299-3p TCTA miRanda miRanda
591 chr3 50296234 50296234 1 + A C rs188823486 50296233 + 50296213 50296253 41 CCCCAGCCGCTCGGAGGCCCCAAAGGAAAAAGCACAAGAAG CCCCAGCCGCTCGGAGGCCCCCAAGGAAAAAGCACAAGAAG < 41bp 1 0.23685488518242 1 0.402653425931931 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNAI2 ENSG00000114353 UTR3 Human protein_coding chr3:50296233 chr3:50296234 . . 0 22 hm5C_associated_SNPs_4403 0 0 1 1 50296229 50296249 mRNA hsa-miR-218 GNAI2 miRanda miRanda
592 chr3 122128757 122128757 1 + T C rs16833120 122128764 + 122128744 122128784 41 AAAGGATGTGGTATGAGGATCCATTTCATAAAGTATGATTT AAAGGATGTGGTACGAGGATCCATTTCATAAAGTATGATTT < 41bp 1 0.0353645961447331 1 0.0547116100788116 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM162A ENSG00000114023 UTR3 Human protein_coding chr3:122128764 chr3:122128757 . . 0 14 hm5C_associated_SNPs_4480 0 0 1 1 122128748 122128772 mRNA hsa-miR-203 FAM162A miRanda miRanda
593 chr3 150347490 150347490 1 + C T rs116450267 150347492 + 150347472 150347512 41 ATTCAGCTGTGTTGTTGACGCTCATCTCTTTTGTCTTACGC ATTCAGCTGTGTTGTTGATGCTCATCTCTTTTGTCTTACGC < 41bp 1 0.430404582754189 1 0.17667943239212 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SELENOT ENSG00000198843 UTR3 Human protein_coding chr3:150347492 chr3:150347490 . . 0 19 hm5C_associated_SNPs_4554 0 0 1 2 150347475 150347500 mRNA hsa-miR-143 SELT miRanda miRanda
594 chr3 150347490 150347490 1 + C T rs116450267 150347492 + 150347472 150347512 41 ATTCAGCTGTGTTGTTGACGCTCATCTCTTTTGTCTTACGC ATTCAGCTGTGTTGTTGATGCTCATCTCTTTTGTCTTACGC < 41bp 1 0.430404582754189 1 0.17667943239212 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SELENOT ENSG00000198843 UTR3 Human protein_coding chr3:150347492 chr3:150347490 . . 0 19 hm5C_associated_SNPs_4554 0 0 1 2 150347468 150347491 mRNA hsa-miR-505 SELT miRanda miRanda
595 chr3 150347494 150347494 1 + C T rs181294307 150347492 + 150347472 150347512 41 ATTCAGCTGTGTTGTTGACGCTCATCTCTTTTGTCTTACGC ATTCAGCTGTGTTGTTGACGCTTATCTCTTTTGTCTTACGC < 41bp 1 0.238443322158357 1 0.17833799123764 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SELENOT ENSG00000198843 UTR3 Human protein_coding chr3:150347492 chr3:150347494 . . 0 23 hm5C_associated_SNPs_4555 0 0 1 1 150347475 150347500 mRNA hsa-miR-143 SELT miRanda miRanda
596 chr3 193413732 193413732 1 + A G rs1056366 193413715 + 193413695 193413735 41 GAGGATATGAAAAAATACTTCCGAAACCAGGAATTCAATGT GAGGATATGAAAAAATACTTCCGAAACCAGGAATTCAGTGT < 41bp 1 0.423971579727278 1 0.204909563064575 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OPA1 ENSG00000198836 UTR3 Human protein_coding chr3:193413715 chr3:193413732 . . 0 38 hm5C_associated_SNPs_4727 1 0 1 1 193413723 193413745 mRNA hsa-miR-495 OPA1 miRanda miRanda
597 chr3 196659648 196659648 1 + A C rs554525400 196659644 + 196659624 196659664 41 TTTTGTGGGGGTGTGGTATACCAAAGTAGCCAGTCACTGGG TTTTGTGGGGGTGTGGTATACCAACGTAGCCAGTCACTGGG < 41bp 1 0.262371285651812 1 0.280370235443115 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SENP5 ENSG00000119231 UTR3 Human protein_coding chr3:196659644 chr3:196659648 . . 0 25 hm5C_associated_SNPs_4739 0 0 1 1 196659626 196659650 mRNA hsa-miR-9 SENP5 miRanda miRanda
598 chr3 196669905 196669905 1 + C T rs576269647 196669911 + 196669891 196669931 41 TGGGCTGTGCGGGGCCGAGGCCGCTTGCTTTTCCTTCCGGG TGGGCTGTGCGGGGTCGAGGCCGCTTGCTTTTCCTTCCGGG < 41bp 1 0.283214172327868 1 0.339179337024689 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NCBP2-AS2 ENSG00000270170 ncRNA_exonic Human protein_coding chr3:196669911 chr3:196669905 . . 0 15 hm5C_associated_SNPs_4742 0 0 1 1 196669897 196669920 mRNA hsa-miR-503 LOC152217 miRanda miRanda
599 chr3 196669912 196669912 1 + C T rs335824 196669911 + 196669891 196669931 41 TGGGCTGTGCGGGGCCGAGGCCGCTTGCTTTTCCTTCCGGG TGGGCTGTGCGGGGCCGAGGCTGCTTGCTTTTCCTTCCGGG < 41bp 1 0.496849696852384 1 0.665314018726349 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NCBP2-AS2 ENSG00000270170 ncRNA_exonic Human protein_coding chr3:196669911 chr3:196669912 . . 0 22 hm5C_associated_SNPs_4743 0 0 1 1 196669897 196669920 mRNA hsa-miR-503 LOC152217 miRanda miRanda
600 chr4 38139125 38139125 1 + A G rs12644032 38139124 + 38139104 38139144 41 CCAACTTGCAATTCAGGGGGCATGTCCCAGTGTTTTTTTTG CCAACTTGCAATTCAGGGGGCGTGTCCCAGTGTTTTTTTTG < 41bp 1 0.0737097113028187 1 0.0894413590431213 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBC1D1 ENSG00000065882 UTR3 Human protein_coding chr4:38139124 chr4:38139125 . . 0 22 hm5C_associated_SNPs_4879 0 0 1 2 38139117 38139138 mRNA hsa-miR-141 TBC1D1 miRanda miRanda
601 chr4 38139125 38139125 1 + A G rs12644032 38139124 + 38139104 38139144 41 CCAACTTGCAATTCAGGGGGCATGTCCCAGTGTTTTTTTTG CCAACTTGCAATTCAGGGGGCGTGTCCCAGTGTTTTTTTTG < 41bp 1 0.0737097113028187 1 0.0894413590431213 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBC1D1 ENSG00000065882 UTR3 Human protein_coding chr4:38139124 chr4:38139125 . . 0 22 hm5C_associated_SNPs_4879 0 0 1 2 38139117 38139138 mRNA hsa-miR-200a TBC1D1 miRanda miRanda
602 chr4 39482354 39482354 1 + C T rs6843515 39482364 + 39482344 39482384 41 TTGAGAAAACCGTCTGGTCACAGCCTGGTCGTCAGATTCTA TTGAGAAAACTGTCTGGTCACAGCCTGGTCGTCAGATTCTA < 41bp 1 0.371155631229526 1 0.0481028258800507 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482364 chr4:39482354 . . 0 11 hm5C_associated_SNPs_4891 0 0 0 1 39482343 39482365 mRNA hsa-miR-542-3p LOC401127 miRanda miRanda
603 chr4 41956251 41956251 1 + G A rs6852659 41956252 + 41956232 41956272 41 AGCTACAAATATAGTATAAGCATTATTAGCAGCTGGTACTT AGCTACAAATATAGTATAAACATTATTAGCAGCTGGTACTT < 41bp 1 0.448808931033731 1 0.0460907816886902 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM33 ENSG00000109133 UTR3 Human protein_coding chr4:41956252 chr4:41956251 . . 0 20 hm5C_associated_SNPs_4899 0 0 1 1 41956236 41956257 mRNA hsa-miR-155 TMEM33 miRanda miRanda
604 chr4 41956255 41956255 1 + T C rs6835667 41956252 + 41956232 41956272 41 AGCTACAAATATAGTATAAGCATTATTAGCAGCTGGTACTT AGCTACAAATATAGTATAAGCATCATTAGCAGCTGGTACTT < 41bp 1 0.633569975188278 1 0.0768101513385773 experiment 0.732860049623443 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM33 ENSG00000109133 UTR3 Human protein_coding chr4:41956252 chr4:41956255 . . 0 24 hm5C_associated_SNPs_4900 0 0 1 1 41956236 41956257 mRNA hsa-miR-155 TMEM33 miRanda miRanda
605 chr4 75971991 75971991 1 + C T rs546352766 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGTTCTACAAG < 41bp 1 0.143702906080273 1 0.0968783497810364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971991 . . 0 33 hm5C_associated_SNPs_4945 0 0 1 9 75971990 75972014 mRNA hsa-miR-302a PARM1 miRanda miRanda
606 chr4 75971991 75971991 1 + C T rs546352766 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGTTCTACAAG < 41bp 1 0.143702906080273 1 0.0968783497810364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971991 . . 0 33 hm5C_associated_SNPs_4945 0 0 1 9 75971990 75972014 mRNA hsa-miR-302b PARM1 miRanda miRanda
607 chr4 75971991 75971991 1 + C T rs546352766 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGTTCTACAAG < 41bp 1 0.143702906080273 1 0.0968783497810364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971991 . . 0 33 hm5C_associated_SNPs_4945 0 0 1 9 75971990 75972014 mRNA hsa-miR-302c PARM1 miRanda miRanda
608 chr4 75971991 75971991 1 + C T rs546352766 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGTTCTACAAG < 41bp 1 0.143702906080273 1 0.0968783497810364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971991 . . 0 33 hm5C_associated_SNPs_4945 0 0 1 9 75971990 75972014 mRNA hsa-miR-302d PARM1 miRanda miRanda
609 chr4 75971991 75971991 1 + C T rs546352766 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGTTCTACAAG < 41bp 1 0.143702906080273 1 0.0968783497810364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971991 . . 0 33 hm5C_associated_SNPs_4945 0 0 1 9 75971990 75972014 mRNA hsa-miR-373 PARM1 miRanda miRanda
610 chr4 75971991 75971991 1 + C T rs546352766 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGTTCTACAAG < 41bp 1 0.143702906080273 1 0.0968783497810364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971991 . . 0 33 hm5C_associated_SNPs_4945 0 0 1 9 75971991 75972014 mRNA hsa-miR-520e PARM1 miRanda miRanda
611 chr4 75971991 75971991 1 + C T rs546352766 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGTTCTACAAG < 41bp 1 0.143702906080273 1 0.0968783497810364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971991 . . 0 33 hm5C_associated_SNPs_4945 0 0 1 9 75971990 75972014 mRNA hsa-miR-520a-3p PARM1 miRanda miRanda
612 chr4 75971991 75971991 1 + C T rs546352766 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGTTCTACAAG < 41bp 1 0.143702906080273 1 0.0968783497810364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971991 . . 0 33 hm5C_associated_SNPs_4945 0 0 1 9 75971989 75972014 mRNA hsa-miR-520b PARM1 miRanda miRanda
613 chr4 75971991 75971991 1 + C T rs546352766 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGTTCTACAAG < 41bp 1 0.143702906080273 1 0.0968783497810364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971991 . . 0 33 hm5C_associated_SNPs_4945 0 0 1 9 75971988 75972014 mRNA hsa-miR-520c-3p PARM1 miRanda miRanda
614 chr4 75971997 75971997 1 + A G rs10012438 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACGAG < 41bp 1 0.161683747362243 1 0.215281307697296 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971997 . . 0 39 hm5C_associated_SNPs_4946 0 0 1 9 75971990 75972014 mRNA hsa-miR-302a PARM1 miRanda miRanda
615 chr4 75971997 75971997 1 + A G rs10012438 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACGAG < 41bp 1 0.161683747362243 1 0.215281307697296 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971997 . . 0 39 hm5C_associated_SNPs_4946 0 0 1 9 75971990 75972014 mRNA hsa-miR-302b PARM1 miRanda miRanda
616 chr4 75971997 75971997 1 + A G rs10012438 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACGAG < 41bp 1 0.161683747362243 1 0.215281307697296 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971997 . . 0 39 hm5C_associated_SNPs_4946 0 0 1 9 75971990 75972014 mRNA hsa-miR-302c PARM1 miRanda miRanda
617 chr4 75971997 75971997 1 + A G rs10012438 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACGAG < 41bp 1 0.161683747362243 1 0.215281307697296 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971997 . . 0 39 hm5C_associated_SNPs_4946 0 0 1 9 75971990 75972014 mRNA hsa-miR-302d PARM1 miRanda miRanda
618 chr4 75971997 75971997 1 + A G rs10012438 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACGAG < 41bp 1 0.161683747362243 1 0.215281307697296 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971997 . . 0 39 hm5C_associated_SNPs_4946 0 0 1 9 75971990 75972014 mRNA hsa-miR-373 PARM1 miRanda miRanda
619 chr4 75971997 75971997 1 + A G rs10012438 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACGAG < 41bp 1 0.161683747362243 1 0.215281307697296 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971997 . . 0 39 hm5C_associated_SNPs_4946 0 0 1 9 75971991 75972014 mRNA hsa-miR-520e PARM1 miRanda miRanda
620 chr4 75971997 75971997 1 + A G rs10012438 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACGAG < 41bp 1 0.161683747362243 1 0.215281307697296 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971997 . . 0 39 hm5C_associated_SNPs_4946 0 0 1 9 75971990 75972014 mRNA hsa-miR-520a-3p PARM1 miRanda miRanda
621 chr4 75971997 75971997 1 + A G rs10012438 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACGAG < 41bp 1 0.161683747362243 1 0.215281307697296 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971997 . . 0 39 hm5C_associated_SNPs_4946 0 0 1 9 75971989 75972014 mRNA hsa-miR-520b PARM1 miRanda miRanda
622 chr4 75971997 75971997 1 + A G rs10012438 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACGAG < 41bp 1 0.161683747362243 1 0.215281307697296 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971997 . . 0 39 hm5C_associated_SNPs_4946 0 0 1 9 75971988 75972014 mRNA hsa-miR-520c-3p PARM1 miRanda miRanda
623 chr4 95588674 95588674 1 + T C rs12294 95588672 + 95588652 95588692 41 AAAGTGTATGGTAGGATGTGCATAGGTTATATGCAAATACT AAAGTGTATGGTAGGATGTGCACAGGTTATATGCAAATACT < 41bp 1 0.41696788044287 1 0.377562284469604 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDLIM5 ENSG00000163110 UTR3 Human protein_coding chr4:95588672 chr4:95588674 . . 0 23 hm5C_associated_SNPs_4980 0 0 1 1 95588662 95588687 mRNA hsa-miR-448 PDLIM5 miRanda miRanda
624 chr5 7897283 7897283 1 + G A rs12347 7897284 + 7897264 7897304 41 AAGCCCCAGCAAAGTATGTGCAAGACAACATCCAGCTTCAT AAGCCCCAGCAAAGTATGTACAAGACAACATCCAGCTTCAT < 41bp 1 0.722848673418163 1 0.100762814283371 experiment 0.554302653163674 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7897284 chr5:7897283 synonymous SNV . 0 20 hm5C_associated_SNPs_5063 2 0 1 2 7897277 7897300 mRNA hsa-miR-138 MTRR miRanda miRanda
625 chr5 7897283 7897283 1 + G A rs12347 7897284 + 7897264 7897304 41 AAGCCCCAGCAAAGTATGTGCAAGACAACATCCAGCTTCAT AAGCCCCAGCAAAGTATGTACAAGACAACATCCAGCTTCAT < 41bp 1 0.722848673418163 1 0.100762814283371 experiment 0.554302653163674 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7897284 chr5:7897283 synonymous SNV . 0 20 hm5C_associated_SNPs_5063 2 0 1 2 7897270 7897290 mRNA hsa-miR-431 MTRR miRanda miRanda
626 chr5 32790918 32790918 1 + G C rs73073697 32790915 + 32790895 32790935 41 TGGAAGTGTTTCAATGGGAGCCAGATCTCATGAGTAAAAAT TGGAAGTGTTTCAATGGGAGCCACATCTCATGAGTAAAAAT < 41bp 1 0.197888983437365 1 0.0853051543235779 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NPR3 ENSG00000113389;ENSG00000181495 UTR3 Human other chr5:32790915 chr5:32790918 . . 0 24 hm5C_associated_SNPs_5097 0 0 0 1 32790896 32790919 mRNA hsa-miR-149 C5orf23 miRanda miRanda
627 chr5 56526778 56526778 1 + A G rs62000370 56526784 + 56526764 56526804 41 GCTTTGATTCTGCTATTGGGCGTCCTAATGGAGGTAAAATT GCTTTGATTCTGCTGTTGGGCGTCCTAATGGAGGTAAAATT < 41bp 1 0.203831800443074 1 0.195968627929688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526784 chr5:56526778 nonsynonymous SNV 1.000 0 15 hm5C_associated_SNPs_5141 0 0 1 1 56526775 56526796 mRNA hsa-miR-136 GPBP1 miRanda miRanda
628 chr5 56526783 56526783 1 + G A rs1130203 56526784 + 56526764 56526804 41 GCTTTGATTCTGCTATTGGGCGTCCTAATGGAGGTAAAATT GCTTTGATTCTGCTATTGGACGTCCTAATGGAGGTAAAATT < 41bp 1 0.221810074324999 1 0.0756416320800781 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526784 chr5:56526783 synonymous SNV . 0 20 hm5C_associated_SNPs_5142 0 0 1 1 56526775 56526796 mRNA hsa-miR-136 GPBP1 miRanda miRanda
629 chr5 72801092 72801092 1 + G A rs545142219 72801109 + 72801089 72801129 41 CCTGAAGAAGTTACTGGGAGCTGCTATTTTATATTATGACT CCTAAAGAAGTTACTGGGAGCTGCTATTTTATATTATGACT < 41bp 1 0.298476996551596 1 0.283280283212662 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BTF3 ENSG00000145741 UTR3 Human protein_coding chr5:72801109 chr5:72801092 . . 0 4 hm5C_associated_SNPs_5169 0 0 1 4 72801090 72801114 mRNA hsa-miR-16 BTF3 miRanda miRanda
630 chr5 72801092 72801092 1 + G A rs545142219 72801109 + 72801089 72801129 41 CCTGAAGAAGTTACTGGGAGCTGCTATTTTATATTATGACT CCTAAAGAAGTTACTGGGAGCTGCTATTTTATATTATGACT < 41bp 1 0.298476996551596 1 0.283280283212662 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BTF3 ENSG00000145741 UTR3 Human protein_coding chr5:72801109 chr5:72801092 . . 0 4 hm5C_associated_SNPs_5169 0 0 1 4 72801088 72801109 mRNA hsa-miR-150 BTF3 miRanda miRanda
631 chr5 72801092 72801092 1 + G A rs545142219 72801109 + 72801089 72801129 41 CCTGAAGAAGTTACTGGGAGCTGCTATTTTATATTATGACT CCTAAAGAAGTTACTGGGAGCTGCTATTTTATATTATGACT < 41bp 1 0.298476996551596 1 0.283280283212662 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BTF3 ENSG00000145741 UTR3 Human protein_coding chr5:72801109 chr5:72801092 . . 0 4 hm5C_associated_SNPs_5169 0 0 1 4 72801092 72801114 mRNA hsa-miR-195 BTF3 miRanda miRanda
632 chr5 72801092 72801092 1 + G A rs545142219 72801109 + 72801089 72801129 41 CCTGAAGAAGTTACTGGGAGCTGCTATTTTATATTATGACT CCTAAAGAAGTTACTGGGAGCTGCTATTTTATATTATGACT < 41bp 1 0.298476996551596 1 0.283280283212662 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BTF3 ENSG00000145741 UTR3 Human protein_coding chr5:72801109 chr5:72801092 . . 0 4 hm5C_associated_SNPs_5169 0 0 1 4 72801092 72801114 mRNA hsa-miR-503 BTF3 miRanda miRanda
633 chr5 85915288 85915288 1 + G A rs142386563 85915269 + 85915249 85915289 41 CCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGGA CCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGAA < 41bp 1 0.402954413544251 1 0.375348269939423 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COX7C ENSG00000127184 UTR3 Human protein_coding chr5:85915269 chr5:85915288 . . 0 40 hm5C_associated_SNPs_5193 0 0 1 2 85915287 85915296 mRNA hsa-miR-494 COX7C miRanda miRanda
634 chr5 85915288 85915288 1 + G A rs142386563 85915269 + 85915249 85915289 41 CCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGGA CCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGAA < 41bp 1 0.402954413544251 1 0.375348269939423 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COX7C ENSG00000127184 UTR3 Human protein_coding chr5:85915269 chr5:85915288 . . 0 40 hm5C_associated_SNPs_5193 0 0 1 2 85915287 85915304 mRNA hsa-miR-873 COX7C miRanda miRanda
635 chr5 94031085 94031085 1 + C G rs187730482 94031082 + 94031062 94031102 41 GCATTGGTACTTACTGTGGACTTCATAGCTTACTGACAGAT GCATTGGTACTTACTGTGGACTTGATAGCTTACTGACAGAT < 41bp 1 0.492768416901607 1 0.172425389289856 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLF1 ENSG00000133302 UTR3 Human protein_coding chr5:94031082 chr5:94031085 . . 0 24 hm5C_associated_SNPs_5199 0 0 1 1 94031064 94031085 mRNA hsa-miR-224 ANKRD32 miRanda miRanda
636 chr5 95131401 95131401 1 + A G rs7622 95131395 + 95131375 95131415 41 GAGCTAGTCAGAAGAGAAATCAAATTAGTGTTTAAACCCAT GAGCTAGTCAGAAGAGAAATCAAATTGGTGTTTAAACCCAT < 41bp 1 0.578419087068093 1 0.784567356109619 experiment 0.843161825863814 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOBTB3 ENSG00000164292 UTR3 Human protein_coding chr5:95131395 chr5:95131401 . . 0 27 hm5C_associated_SNPs_5201 0 0 1 1 95131399 95131421 mRNA hsa-miR-203 RHOBTB3 miRanda miRanda
637 chr5 95131859 95131859 1 + T C rs143291303 95131854 + 95131834 95131874 41 ACAGCTAAACTTTTCAACTGCAATTTTAAAAACTACACTAC ACAGCTAAACTTTTCAACTGCAATTCTAAAAACTACACTAC < 41bp 1 0.233786187456821 1 0.0688180029392242 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOBTB3 ENSG00000164292 UTR3 Human protein_coding chr5:95131854 chr5:95131859 . . 0 26 hm5C_associated_SNPs_5204 0 0 1 1 95131851 95131875 mRNA hsa-miR-142-3p RHOBTB3 miRanda miRanda
638 chr5 102472497 102472497 1 + C T rs114517746 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGATTTGAATATGCAGTATCTCATACAAGATAGG < 41bp 1 0.380241225564404 1 0.170014649629593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472497 synonymous SNV . 0 11 hm5C_associated_SNPs_5214 0 0 1 4 102472489 102472511 mRNA hsa-miR-217 PPIP5K2 miRanda miRanda
639 chr5 102472497 102472497 1 + C T rs114517746 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGATTTGAATATGCAGTATCTCATACAAGATAGG < 41bp 1 0.380241225564404 1 0.170014649629593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472497 synonymous SNV . 0 11 hm5C_associated_SNPs_5214 0 0 1 4 102472493 102472516 mRNA hsa-miR-146a PPIP5K2 miRanda miRanda
640 chr5 102472497 102472497 1 + C T rs114517746 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGATTTGAATATGCAGTATCTCATACAAGATAGG < 41bp 1 0.380241225564404 1 0.170014649629593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472497 synonymous SNV . 0 11 hm5C_associated_SNPs_5214 0 0 1 4 102472488 102472509 mRNA hsa-miR-448 PPIP5K2 miRanda miRanda
641 chr5 102472497 102472497 1 + C T rs114517746 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGATTTGAATATGCAGTATCTCATACAAGATAGG < 41bp 1 0.380241225564404 1 0.170014649629593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472497 synonymous SNV . 0 11 hm5C_associated_SNPs_5214 0 0 1 4 102472494 102472516 mRNA hsa-miR-146b-5p PPIP5K2 miRanda miRanda
642 chr5 111496576 111496576 1 + G A rs374211009 111496579 + 111496559 111496599 41 GTCCTTTCTTCCTTTTGGTGCGAGCTTGCTGTGGTTTTTGC GTCCTTTCTTCCTTTTGATGCGAGCTTGCTGTGGTTTTTGC < 41bp 1 0.397997467533361 1 0.352875530719757 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EPB41L4A-AS1 ENSG00000224032 ncRNA_exonic Human lincRNA chr5:111496579 chr5:111496576 . . 0 18 hm5C_associated_SNPs_5216 0 0 1 1 111496571 111496594 lncRNA hsa-miR-140-3p EPB41L4A-AS1 miRanda starBase2
643 chr5 111496581 111496581 1 + A G rs190479616 111496579 + 111496559 111496599 41 GTCCTTTCTTCCTTTTGGTGCGAGCTTGCTGTGGTTTTTGC GTCCTTTCTTCCTTTTGGTGCGGGCTTGCTGTGGTTTTTGC < 41bp 1 0.481156965768151 1 0.586247086524963 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EPB41L4A-AS1 ENSG00000224032 ncRNA_exonic Human lincRNA chr5:111496579 chr5:111496581 . . 0 23 hm5C_associated_SNPs_5217 0 0 1 1 111496571 111496594 lncRNA hsa-miR-140-3p EPB41L4A-AS1 miRanda starBase2
644 chr5 111496834 111496834 1 + C G rs146721641 111496832 + 111496812 111496852 41 ATCGACTATGCCAGGGAGTTCTCCAGATAAGCCTGGTTTTA ATCGACTATGCCAGGGAGTTCTGCAGATAAGCCTGGTTTTA < 41bp 1 0.694614317738808 1 0.403013825416565 experiment 0.610771364522383 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPB41L4A-AS1 ENSG00000224032 ncRNA_exonic Human lincRNA chr5:111496832 chr5:111496834 . . 0 23 hm5C_associated_SNPs_5219 0 0 1 4 111496814 111496835 lncRNA hsa-miR-146a-5p EPB41L4A-AS1 miRanda starBase2
645 chr5 111496834 111496834 1 + C G rs146721641 111496832 + 111496812 111496852 41 ATCGACTATGCCAGGGAGTTCTCCAGATAAGCCTGGTTTTA ATCGACTATGCCAGGGAGTTCTGCAGATAAGCCTGGTTTTA < 41bp 1 0.694614317738808 1 0.403013825416565 experiment 0.610771364522383 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPB41L4A-AS1 ENSG00000224032 ncRNA_exonic Human lincRNA chr5:111496832 chr5:111496834 . . 0 23 hm5C_associated_SNPs_5219 0 0 1 4 111496814 111496835 lncRNA hsa-miR-146b-5p EPB41L4A-AS1 miRanda starBase2
646 chr5 111496834 111496834 1 + C G rs146721641 111496832 + 111496812 111496852 41 ATCGACTATGCCAGGGAGTTCTCCAGATAAGCCTGGTTTTA ATCGACTATGCCAGGGAGTTCTGCAGATAAGCCTGGTTTTA < 41bp 1 0.694614317738808 1 0.403013825416565 experiment 0.610771364522383 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPB41L4A-AS1 ENSG00000224032 ncRNA_exonic Human lincRNA chr5:111496832 chr5:111496834 . . 0 23 hm5C_associated_SNPs_5219 0 0 1 4 111496813 111496835 lncRNA hsa-miR-7153-5p EPB41L4A-AS1 miRanda starBase2
647 chr5 111496834 111496834 1 + C G rs146721641 111496832 + 111496812 111496852 41 ATCGACTATGCCAGGGAGTTCTCCAGATAAGCCTGGTTTTA ATCGACTATGCCAGGGAGTTCTGCAGATAAGCCTGGTTTTA < 41bp 1 0.694614317738808 1 0.403013825416565 experiment 0.610771364522383 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPB41L4A-AS1 ENSG00000224032 ncRNA_exonic Human lincRNA chr5:111496832 chr5:111496834 . . 0 23 hm5C_associated_SNPs_5219 0 0 1 4 111496818 111496839 lncRNA hsa-miR-516b-5p EPB41L4A-AS1 miRanda starBase2
648 chr5 118729388 118729388 1 + A G rs11064 118729387 + 118729367 118729407 41 CTGAGGACTTTTTAATAGGGCAGTTGTTGTGTTGGTGGCAC CTGAGGACTTTTTAATAGGGCGGTTGTTGTGTTGGTGGCAC < 41bp 1 0.412169123171636 1 0.178697317838669 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNFAIP8 ENSG00000145779 UTR3 Human protein_coding chr5:118729387 chr5:118729388 . . 0 22 hm5C_associated_SNPs_5237 0 0 1 4 118729372 118729395 mRNA hsa-miR-141 TNFAIP8 miRanda miRanda
649 chr5 118729388 118729388 1 + A G rs11064 118729387 + 118729367 118729407 41 CTGAGGACTTTTTAATAGGGCAGTTGTTGTGTTGGTGGCAC CTGAGGACTTTTTAATAGGGCGGTTGTTGTGTTGGTGGCAC < 41bp 1 0.412169123171636 1 0.178697317838669 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNFAIP8 ENSG00000145779 UTR3 Human protein_coding chr5:118729387 chr5:118729388 . . 0 22 hm5C_associated_SNPs_5237 0 0 1 4 118729372 118729395 mRNA hsa-miR-200a TNFAIP8 miRanda miRanda
650 chr5 118729388 118729388 1 + A G rs11064 118729387 + 118729367 118729407 41 CTGAGGACTTTTTAATAGGGCAGTTGTTGTGTTGGTGGCAC CTGAGGACTTTTTAATAGGGCGGTTGTTGTGTTGGTGGCAC < 41bp 1 0.412169123171636 1 0.178697317838669 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNFAIP8 ENSG00000145779 UTR3 Human protein_coding chr5:118729387 chr5:118729388 . . 0 22 hm5C_associated_SNPs_5237 0 0 1 4 118729379 118729400 mRNA hsa-miR-495 TNFAIP8 miRanda miRanda
651 chr5 118729388 118729388 1 + A G rs11064 118729387 + 118729367 118729407 41 CTGAGGACTTTTTAATAGGGCAGTTGTTGTGTTGGTGGCAC CTGAGGACTTTTTAATAGGGCGGTTGTTGTGTTGGTGGCAC < 41bp 1 0.412169123171636 1 0.178697317838669 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNFAIP8 ENSG00000145779 UTR3 Human protein_coding chr5:118729387 chr5:118729388 . . 0 22 hm5C_associated_SNPs_5237 0 0 1 4 118729388 118729410 mRNA hsa-miR-455-5p TNFAIP8 miRanda miRanda
652 chr5 118877695 118877695 1 + A G rs111671384 118877694 + 118877674 118877714 41 CTACGCCAAGCTCTGAAGGGCACACTACACTATTAATAAAA CTACGCCAAGCTCTGAAGGGCGCACTACACTATTAATAAAA < 41bp 1 0.195290963577783 1 0.102002441883087 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSD17B4 ENSG00000133835 UTR3 Human protein_coding chr5:118877694 chr5:118877695 . . 0 22 hm5C_associated_SNPs_5239 3 0 1 3 118877690 118877702 mRNA hsa-miR-142-3p HSD17B4 miRanda miRanda
653 chr5 118877695 118877695 1 + A G rs111671384 118877694 + 118877674 118877714 41 CTACGCCAAGCTCTGAAGGGCACACTACACTATTAATAAAA CTACGCCAAGCTCTGAAGGGCGCACTACACTATTAATAAAA < 41bp 1 0.195290963577783 1 0.102002441883087 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSD17B4 ENSG00000133835 UTR3 Human protein_coding chr5:118877694 chr5:118877695 . . 0 22 hm5C_associated_SNPs_5239 3 0 1 3 118877680 118877702 mRNA hsa-miR-142-3p HSD17B4 miRanda miRanda
654 chr5 118877695 118877695 1 + A G rs111671384 118877694 + 118877674 118877714 41 CTACGCCAAGCTCTGAAGGGCACACTACACTATTAATAAAA CTACGCCAAGCTCTGAAGGGCGCACTACACTATTAATAAAA < 41bp 1 0.195290963577783 1 0.102002441883087 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSD17B4 ENSG00000133835 UTR3 Human protein_coding chr5:118877694 chr5:118877695 . . 0 22 hm5C_associated_SNPs_5239 3 0 1 3 118877690 118877696 mRNA hsa-miR-874 HSD17B4 miRanda miRanda
655 chr5 122426284 122426284 1 + C G rs551675521 122426277 + 122426257 122426297 41 TGGAGATCATCCCGCTCAACCAGCACACCAGCGACCCCAAC TGGAGATCATCCCGCTCAACCAGCACAGCAGCGACCCCAAC < 41bp 1 0.784718495756315 1 0.830026865005493 experiment 0.430563008487369 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRDM6 ENSG00000061455 CDS Human protein_coding chr5:122426277 chr5:122426284 nonsynonymous SNV 1.000 0 28 hm5C_associated_SNPs_5240 0 0 0 1 122426267 122426289 mRNA hsa-miR-138 PRDM6 miRanda miRanda
656 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614111 138614134 mRNA hsa-let-7a SNHG4 miRanda miRanda
657 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614115 138614134 mRNA hsa-let-7b SNHG4 miRanda miRanda
658 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614110 138614134 mRNA hsa-let-7c SNHG4 miRanda miRanda
659 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614111 138614134 mRNA hsa-let-7d SNHG4 miRanda miRanda
660 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614111 138614134 mRNA hsa-let-7e SNHG4 miRanda miRanda
661 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614114 138614134 mRNA hsa-let-7f SNHG4 miRanda miRanda
662 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614111 138614134 mRNA hsa-miR-98 SNHG4 miRanda miRanda
663 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614113 138614133 mRNA hsa-miR-196a SNHG4 miRanda miRanda
664 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614111 138614134 mRNA hsa-let-7g SNHG4 miRanda miRanda
665 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614111 138614134 mRNA hsa-let-7i SNHG4 miRanda miRanda
666 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614113 138614133 mRNA hsa-miR-196b SNHG4 miRanda miRanda
667 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614115 138614134 lncRNA hsa-let-7b-5p SNHG4 miRanda starBase2
668 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614110 138614134 lncRNA hsa-let-7c-5p SNHG4 miRanda starBase2
669 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614111 138614134 lncRNA hsa-let-7d-5p SNHG4 miRanda starBase2
670 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614111 138614134 lncRNA hsa-let-7e-5p SNHG4 miRanda starBase2
671 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614114 138614134 lncRNA hsa-let-7f-5p SNHG4 miRanda starBase2
672 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614111 138614134 lncRNA hsa-let-7g-5p SNHG4 miRanda starBase2
673 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614111 138614134 lncRNA hsa-let-7i-5p SNHG4 miRanda starBase2
674 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614112 138614134 lncRNA hsa-miR-4458 SNHG4 miRanda starBase2
675 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614117 138614134 lncRNA hsa-miR-4500 SNHG4 miRanda starBase2
676 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614111 138614134 lncRNA hsa-miR-98-5p SNHG4 miRanda starBase2
677 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614113 138614133 lncRNA hsa-miR-196a-5p SNHG4 miRanda starBase2
678 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614113 138614133 lncRNA hsa-miR-196b-5p SNHG4 miRanda starBase2
679 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 138614106 138614125 lncRNA hsa-miR-409-3p SNHG4 miRanda starBase2
680 chr5 138665490 138665490 1 + A G rs185734839 138665507 + 138665487 138665527 41 GAAACATTCCATGTTTTAATCTGAGCCTTGCAGACTTTCAT GAAGCATTCCATGTTTTAATCTGAGCCTTGCAGACTTTCAT < 41bp 1 0.397253430045439 1 0.275183856487274 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MATR3 ENSG00000015479 UTR3 Human protein_coding chr5:138665507 chr5:138665490 . . 0 4 hm5C_associated_SNPs_5288 1 0 1 4 138665490 138665514 mRNA hsa-miR-24 MATR3 miRanda miRanda
681 chr5 138665490 138665490 1 + A G rs185734839 138665507 + 138665487 138665527 41 GAAACATTCCATGTTTTAATCTGAGCCTTGCAGACTTTCAT GAAGCATTCCATGTTTTAATCTGAGCCTTGCAGACTTTCAT < 41bp 1 0.397253430045439 1 0.275183856487274 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MATR3 ENSG00000015479 UTR3 Human protein_coding chr5:138665507 chr5:138665490 . . 0 4 hm5C_associated_SNPs_5288 1 0 1 4 138665475 138665497 mRNA hsa-miR-1 MATR3 miRanda miRanda
682 chr5 138665490 138665490 1 + A G rs185734839 138665507 + 138665487 138665527 41 GAAACATTCCATGTTTTAATCTGAGCCTTGCAGACTTTCAT GAAGCATTCCATGTTTTAATCTGAGCCTTGCAGACTTTCAT < 41bp 1 0.397253430045439 1 0.275183856487274 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MATR3 ENSG00000015479 UTR3 Human protein_coding chr5:138665507 chr5:138665490 . . 0 4 hm5C_associated_SNPs_5288 1 0 1 4 138665471 138665497 mRNA hsa-miR-206 MATR3 miRanda miRanda
683 chr5 138665490 138665490 1 + A G rs185734839 138665507 + 138665487 138665527 41 GAAACATTCCATGTTTTAATCTGAGCCTTGCAGACTTTCAT GAAGCATTCCATGTTTTAATCTGAGCCTTGCAGACTTTCAT < 41bp 1 0.397253430045439 1 0.275183856487274 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MATR3 ENSG00000015479 UTR3 Human protein_coding chr5:138665507 chr5:138665490 . . 0 4 hm5C_associated_SNPs_5288 1 0 1 4 138665478 138665497 mRNA hsa-miR-613 MATR3 miRanda miRanda
684 chr5 141531833 141531833 1 + C T rs114615467 141531820 + 141531800 141531840 41 TCTGTATGAACACCTGGAAGCAAAATCATAGTGCAAAAATA TCTGTATGAACACCTGGAAGCAAAATCATAGTGTAAAAATA < 41bp 1 0.581411560676116 1 0.168559163808823 experiment 0.837176878647768 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NDFIP1 ENSG00000131507 UTR3 Human protein_coding chr5:141531820 chr5:141531833 . . 0 34 hm5C_associated_SNPs_5334 0 0 1 7 141531814 141531837 mRNA hsa-miR-25 NDFIP1 miRanda miRanda
685 chr5 141531833 141531833 1 + C T rs114615467 141531820 + 141531800 141531840 41 TCTGTATGAACACCTGGAAGCAAAATCATAGTGCAAAAATA TCTGTATGAACACCTGGAAGCAAAATCATAGTGTAAAAATA < 41bp 1 0.581411560676116 1 0.168559163808823 experiment 0.837176878647768 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NDFIP1 ENSG00000131507 UTR3 Human protein_coding chr5:141531820 chr5:141531833 . . 0 34 hm5C_associated_SNPs_5334 0 0 1 7 141531815 141531837 mRNA hsa-miR-32 NDFIP1 miRanda miRanda
686 chr5 141531833 141531833 1 + C T rs114615467 141531820 + 141531800 141531840 41 TCTGTATGAACACCTGGAAGCAAAATCATAGTGCAAAAATA TCTGTATGAACACCTGGAAGCAAAATCATAGTGTAAAAATA < 41bp 1 0.581411560676116 1 0.168559163808823 experiment 0.837176878647768 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NDFIP1 ENSG00000131507 UTR3 Human protein_coding chr5:141531820 chr5:141531833 . . 0 34 hm5C_associated_SNPs_5334 0 0 1 7 141531815 141531837 mRNA hsa-miR-92a NDFIP1 miRanda miRanda
687 chr5 141531833 141531833 1 + C T rs114615467 141531820 + 141531800 141531840 41 TCTGTATGAACACCTGGAAGCAAAATCATAGTGCAAAAATA TCTGTATGAACACCTGGAAGCAAAATCATAGTGTAAAAATA < 41bp 1 0.581411560676116 1 0.168559163808823 experiment 0.837176878647768 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NDFIP1 ENSG00000131507 UTR3 Human protein_coding chr5:141531820 chr5:141531833 . . 0 34 hm5C_associated_SNPs_5334 0 0 1 7 141531819 141531839 mRNA hsa-miR-129-5p NDFIP1 miRanda miRanda
688 chr5 141531833 141531833 1 + C T rs114615467 141531820 + 141531800 141531840 41 TCTGTATGAACACCTGGAAGCAAAATCATAGTGCAAAAATA TCTGTATGAACACCTGGAAGCAAAATCATAGTGTAAAAATA < 41bp 1 0.581411560676116 1 0.168559163808823 experiment 0.837176878647768 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NDFIP1 ENSG00000131507 UTR3 Human protein_coding chr5:141531820 chr5:141531833 . . 0 34 hm5C_associated_SNPs_5334 0 0 1 7 141531818 141531837 mRNA hsa-miR-363 NDFIP1 miRanda miRanda
689 chr5 141531833 141531833 1 + C T rs114615467 141531820 + 141531800 141531840 41 TCTGTATGAACACCTGGAAGCAAAATCATAGTGCAAAAATA TCTGTATGAACACCTGGAAGCAAAATCATAGTGTAAAAATA < 41bp 1 0.581411560676116 1 0.168559163808823 experiment 0.837176878647768 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NDFIP1 ENSG00000131507 UTR3 Human protein_coding chr5:141531820 chr5:141531833 . . 0 34 hm5C_associated_SNPs_5334 0 0 1 7 141531816 141531837 mRNA hsa-miR-367 NDFIP1 miRanda miRanda
690 chr5 141531833 141531833 1 + C T rs114615467 141531820 + 141531800 141531840 41 TCTGTATGAACACCTGGAAGCAAAATCATAGTGCAAAAATA TCTGTATGAACACCTGGAAGCAAAATCATAGTGTAAAAATA < 41bp 1 0.581411560676116 1 0.168559163808823 experiment 0.837176878647768 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NDFIP1 ENSG00000131507 UTR3 Human protein_coding chr5:141531820 chr5:141531833 . . 0 34 hm5C_associated_SNPs_5334 0 0 1 7 141531816 141531837 mRNA hsa-miR-92b NDFIP1 miRanda miRanda
691 chr5 172447762 172447762 1 + G A rs17075508 172447743 + 172447723 172447763 41 GGTTTCTTTCCAGCAGTAGTCAGCCATCCGGACAGAACCGT GGTTTCTTTCCAGCAGTAGTCAGCCATCCGGACAGAACCAT < 41bp 1 0.265812238720448 1 0.75439178943634 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA74B ENSG00000212402 ncRNA_exonic Human snoRNA chr5:172447743 chr5:172447762 . . 0 40 hm5C_associated_SNPs_5412 0 0 1 1 172447749 172447769 mRNA hsa-miR-873 SNORA74B miRanda miRanda
692 chr5 172447762 172447762 1 + G A rs17075508 172447746 + 172447726 172447766 41 TTCTTTCCAGCAGTAGTCAGCCATCCGGACAGAACCGTTCC TTCTTTCCAGCAGTAGTCAGCCATCCGGACAGAACCATTCC < 41bp 1 0.0125333459923127 1 0.0604527592658997 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA74B ENSG00000212402 ncRNA_exonic Human snoRNA chr5:172447746 chr5:172447762 . . 0 37 hm5C_associated_SNPs_5413 0 0 1 1 172447749 172447769 mRNA hsa-miR-873 SNORA74B miRanda miRanda
693 chr5 172447762 172447762 1 + G A rs17075508 172447750 + 172447730 172447770 41 TTCCAGCAGTAGTCAGCCATCCGGACAGAACCGTTCCTGTG TTCCAGCAGTAGTCAGCCATCCGGACAGAACCATTCCTGTG < 41bp 1 0.644006587641951 1 0.934125065803528 experiment 0.711986824716099 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA74B ENSG00000212402 ncRNA_exonic Human snoRNA chr5:172447750 chr5:172447762 . . 0 33 hm5C_associated_SNPs_5414 0 0 1 1 172447749 172447769 mRNA hsa-miR-873 SNORA74B miRanda miRanda
694 chr5 172447762 172447762 1 + G A rs17075508 172447755 + 172447735 172447775 41 GCAGTAGTCAGCCATCCGGACAGAACCGTTCCTGTGATGGT GCAGTAGTCAGCCATCCGGACAGAACCATTCCTGTGATGGT < 41bp 1 0.246439982672654 1 0.316506505012512 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA74B ENSG00000212402 ncRNA_exonic Human snoRNA chr5:172447755 chr5:172447762 . . 0 28 hm5C_associated_SNPs_5415 0 0 1 1 172447749 172447769 mRNA hsa-miR-873 SNORA74B miRanda miRanda
695 chr5 172447762 172447762 1 + G A rs17075508 172447760 + 172447740 172447780 41 AGTCAGCCATCCGGACAGAACCGTTCCTGTGATGGTGTTAC AGTCAGCCATCCGGACAGAACCATTCCTGTGATGGTGTTAC < 41bp 1 0.0271320025025088 1 0.0433060824871063 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA74B ENSG00000212402 ncRNA_exonic Human snoRNA chr5:172447760 chr5:172447762 . . 0 23 hm5C_associated_SNPs_5416 0 0 1 1 172447749 172447769 mRNA hsa-miR-873 SNORA74B miRanda miRanda
696 chr5 172461659 172461659 1 + G A rs138021157 172461669 + 172461649 172461689 41 TGAGAGATACGTTACTCTCTCCTTGGAATCTGTGGATTTGA TGAGAGATACATTACTCTCTCCTTGGAATCTGTGGATTTGA < 41bp 1 0.27562206979685 1 0.0829944014549255 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP6V0E1 ENSG00000113732 UTR3 Human protein_coding chr5:172461669 chr5:172461659 . . 0 11 hm5C_associated_SNPs_5417 0 0 1 1 172461648 172461671 mRNA hsa-miR-185 ATP6V0E1 miRanda miRanda
697 chr5 172461659 172461659 1 + G A rs138021157 172461670 + 172461650 172461690 41 GAGAGATACGTTACTCTCTCCTTGGAATCTGTGGATTTGAA GAGAGATACATTACTCTCTCCTTGGAATCTGTGGATTTGAA < 41bp 1 0.522981418898329 1 0.110203325748444 experiment 0.954037162203343 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP6V0E1 ENSG00000113732 UTR3 Human protein_coding chr5:172461670 chr5:172461659 . . 0 10 hm5C_associated_SNPs_5418 0 0 1 1 172461648 172461671 mRNA hsa-miR-185 ATP6V0E1 miRanda miRanda
698 chr5 176085168 176085168 1 + A G rs748743 176085169 + 176085149 176085189 41 AGTCAAGTTCAGCATCTTCACCGTGGCTGCAGAGCTGCCTG AGTCAAGTTCAGCATCTTCGCCGTGGCTGCAGAGCTGCCTG < 41bp 1 0.643504229612333 1 0.834322333335876 experiment 0.712991540775334 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPAN17 ENSG00000048140 UTR3 Human protein_coding chr5:176085169 chr5:176085168 . . 0 20 hm5C_associated_SNPs_5483 0 0 1 1 176085152 176085174 mRNA hsa-miR-125a-3p TSPAN17 miRanda miRanda
699 chr5 176085171 176085171 1 + G A rs146039549 176085169 + 176085149 176085189 41 AGTCAAGTTCAGCATCTTCACCGTGGCTGCAGAGCTGCCTG AGTCAAGTTCAGCATCTTCACCATGGCTGCAGAGCTGCCTG < 41bp 1 0.510653080395821 1 0.725547909736633 experiment 0.978693839208359 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPAN17 ENSG00000048140 UTR3 Human protein_coding chr5:176085169 chr5:176085171 . . 0 23 hm5C_associated_SNPs_5484 0 0 1 1 176085152 176085174 mRNA hsa-miR-125a-3p TSPAN17 miRanda miRanda
700 chr5 176733907 176733907 1 + T C rs185277044 176733904 + 176733884 176733924 41 TTTTGTTCTCTGATGTGTCTCAGTATCTAGCACATAATAGA TTTTGTTCTCTGATGTGTCTCAGCATCTAGCACATAATAGA < 41bp 1 0.675400965330433 1 0.342762231826782 experiment 0.649198069339134 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MXD3;PRELID1 ENSG00000169230;ENSG00000213347 UTR3 Human other chr5:176733904 chr5:176733907 . . 0 24 hm5C_associated_SNPs_5489 0 0 1 2 176733894 176733918 mRNA hsa-miR-218 PRELID1 miRanda miRanda
701 chr5 176733907 176733907 1 + T C rs185277044 176733904 + 176733884 176733924 41 TTTTGTTCTCTGATGTGTCTCAGTATCTAGCACATAATAGA TTTTGTTCTCTGATGTGTCTCAGCATCTAGCACATAATAGA < 41bp 1 0.675400965330433 1 0.342762231826782 experiment 0.649198069339134 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MXD3;PRELID1 ENSG00000169230;ENSG00000213347 UTR3 Human other chr5:176733904 chr5:176733907 . . 0 24 hm5C_associated_SNPs_5489 0 0 1 2 176733898 176733919 mRNA hsa-miR-455-5p PRELID1 miRanda miRanda
702 chr5 179264132 179264132 1 + T G rs1060271 179264121 + 179264101 179264141 41 AATGTTGGTTTCACTGAGAGCTGCCTCCTGGTCTCTTCACC AATGTTGGTTTCACTGAGAGCTGCCTCCTGGGCTCTTCACC < 41bp 1 0.179995349945269 1 0.0541068315505981 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SQSTM1 ENSG00000161010;ENSG00000161011 UTR3 Human other chr5:179264121 chr5:179264132 . . 0 32 hm5C_associated_SNPs_5530 1 0 1 1 179264128 179264149 mRNA hsa-miR-139-5p SQSTM1 miRanda miRanda
703 chr6 20492407 20492407 1 + C G rs4134986 20492416 + 20492396 20492436 41 ACAAAAAACCACAAGAGCCCCAGCCAGTTTACTCCAGGTAG ACAAAAAACCAGAAGAGCCCCAGCCAGTTTACTCCAGGTAG < 41bp 1 0.361872103930296 1 0.118128299713135 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control E2F3 ENSG00000112242 UTR3 Human protein_coding chr6:20492416 chr6:20492407 . . 0 12 hm5C_associated_SNPs_5690 0 0 1 1 20492388 20492411 mRNA hsa-miR-9 E2F3 miRanda miRanda
704 chr6 31590898 31590898 1 + C T rs2736172 31590883 + 31590863 31590903 41 ACAAAGGCGTGTCTGTGGTTCCCTGTCTTTGGACACGTAAG ACAAAGGCGTGTCTGTGGTTCCCTGTCTTTGGACATGTAAG < 41bp 1 0.0447494573760968 1 0.0320070385932922 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA38 ENSG00000200816 ncRNA_exonic Human snoRNA chr6:31590883 chr6:31590898 . . 0 36 hm5C_associated_SNPs_6764 0 1 1 1 31590877 31590900 mRNA hsa-miR-187 SNORA38 miRanda miRanda
705 chr6 31590898 31590898 1 + C T rs2736172 31590889 + 31590869 31590909 41 GCGTGTCTGTGGTTCCCTGTCTTTGGACACGTAAGAATTGG GCGTGTCTGTGGTTCCCTGTCTTTGGACATGTAAGAATTGG < 41bp 1 0.074606539231422 1 0.174413025379181 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA38 ENSG00000200816 ncRNA_exonic Human snoRNA chr6:31590889 chr6:31590898 . . 0 30 hm5C_associated_SNPs_6765 0 1 1 1 31590877 31590900 mRNA hsa-miR-187 SNORA38 miRanda miRanda
706 chr6 31593369 31593369 1 + G A rs114452424 31593350 + 31593330 31593370 41 GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGC GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCAC < 41bp 1 0.566185942779908 1 0.336709380149841 experiment 0.867628114440183 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593350 chr6:31593369 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_6766 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
707 chr6 31593369 31593369 1 + G A rs114452424 31593351 + 31593331 31593371 41 GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCACG < 41bp 1 0.36544533776436 1 0.109040707349777 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593351 chr6:31593369 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_6767 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
708 chr6 31593369 31593369 1 + G A rs114452424 31593352 + 31593332 31593372 41 CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCACGG < 41bp 1 0.355539559469808 1 0.118464022874832 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593352 chr6:31593369 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_6768 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
709 chr6 31593369 31593369 1 + G A rs114452424 31593353 + 31593333 31593373 41 TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCACGGA < 41bp 1 0.288302461282662 1 0.393140733242035 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593353 chr6:31593369 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_6769 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
710 chr6 31593369 31593369 1 + G A rs114452424 31593388 + 31593368 31593408 41 CGCGGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC CACGGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC < 41bp 1 0.645230880408024 1 0.700056076049805 experiment 0.709538239183951 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593388 chr6:31593369 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_6770 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
711 chr6 32134295 32134295 1 + A C rs148110134 32134276 + 32134256 32134296 41 TCCTCTGGCATGGACGCAGTCAGGGAGTCTGCTCCAAGCAG TCCTCTGGCATGGACGCAGTCAGGGAGTCTGCTCCAAGCCG < 41bp 1 0.744080328914845 1 0.855937957763672 experiment 0.51183934217031 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134276 chr6:32134295 nonsynonymous SNV 0.960 1 40 hm5C_associated_SNPs_6832 0 0 1 2 32134273 32134304 mRNA hsa-miR-199a-5p PPT2 miRanda miRanda
712 chr6 32134295 32134295 1 + A C rs148110134 32134276 + 32134256 32134296 41 TCCTCTGGCATGGACGCAGTCAGGGAGTCTGCTCCAAGCAG TCCTCTGGCATGGACGCAGTCAGGGAGTCTGCTCCAAGCCG < 41bp 1 0.744080328914845 1 0.855937957763672 experiment 0.51183934217031 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134276 chr6:32134295 nonsynonymous SNV 0.960 1 40 hm5C_associated_SNPs_6832 0 0 1 2 32134282 32134304 mRNA hsa-miR-199b-5p PPT2 miRanda miRanda
713 chr6 34213497 34213497 1 + C T rs537322378 34213510 + 34213490 34213530 41 CGCCACTCAGCCATTTCCCCCTCCTCAGATGGGGCACCAAT CGCCACTTAGCCATTTCCCCCTCCTCAGATGGGGCACCAAT < 41bp 1 0.309242427402104 1 0.693559408187866 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HMGA1 ENSG00000137309 UTR3 Human protein_coding chr6:34213510 chr6:34213497 . . 0 8 hm5C_associated_SNPs_6850 0 0 1 1 34213479 34213501 mRNA hsa-miR-138 HMGA1 miRanda miRanda
714 chr6 34213675 34213675 1 + G A rs149013137 34213674 + 34213654 34213694 41 ATGTTCCATTCTTCGACATCCGTCATTGCTGCTGCTACCAG ATGTTCCATTCTTCGACATCCATCATTGCTGCTGCTACCAG < 41bp 1 0.47627572109144 1 0.42156994342804 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HMGA1 ENSG00000137309 UTR3 Human protein_coding chr6:34213674 chr6:34213675 . . 0 22 hm5C_associated_SNPs_6851 0 0 1 6 34213667 34213687 mRNA hsa-miR-15a HMGA1 miRanda miRanda
715 chr6 34213675 34213675 1 + G A rs149013137 34213674 + 34213654 34213694 41 ATGTTCCATTCTTCGACATCCGTCATTGCTGCTGCTACCAG ATGTTCCATTCTTCGACATCCATCATTGCTGCTGCTACCAG < 41bp 1 0.47627572109144 1 0.42156994342804 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HMGA1 ENSG00000137309 UTR3 Human protein_coding chr6:34213674 chr6:34213675 . . 0 22 hm5C_associated_SNPs_6851 0 0 1 6 34213670 34213690 mRNA hsa-miR-16 HMGA1 miRanda miRanda
716 chr6 34213675 34213675 1 + G A rs149013137 34213674 + 34213654 34213694 41 ATGTTCCATTCTTCGACATCCGTCATTGCTGCTGCTACCAG ATGTTCCATTCTTCGACATCCATCATTGCTGCTGCTACCAG < 41bp 1 0.47627572109144 1 0.42156994342804 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HMGA1 ENSG00000137309 UTR3 Human protein_coding chr6:34213674 chr6:34213675 . . 0 22 hm5C_associated_SNPs_6851 0 0 1 6 34213667 34213687 mRNA hsa-miR-15b HMGA1 miRanda miRanda
717 chr6 34213675 34213675 1 + G A rs149013137 34213674 + 34213654 34213694 41 ATGTTCCATTCTTCGACATCCGTCATTGCTGCTGCTACCAG ATGTTCCATTCTTCGACATCCATCATTGCTGCTGCTACCAG < 41bp 1 0.47627572109144 1 0.42156994342804 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HMGA1 ENSG00000137309 UTR3 Human protein_coding chr6:34213674 chr6:34213675 . . 0 22 hm5C_associated_SNPs_6851 0 0 1 6 34213665 34213687 mRNA hsa-miR-195 HMGA1 miRanda miRanda
718 chr6 34213675 34213675 1 + G A rs149013137 34213674 + 34213654 34213694 41 ATGTTCCATTCTTCGACATCCGTCATTGCTGCTGCTACCAG ATGTTCCATTCTTCGACATCCATCATTGCTGCTGCTACCAG < 41bp 1 0.47627572109144 1 0.42156994342804 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HMGA1 ENSG00000137309 UTR3 Human protein_coding chr6:34213674 chr6:34213675 . . 0 22 hm5C_associated_SNPs_6851 0 0 1 6 34213665 34213687 mRNA hsa-miR-424 HMGA1 miRanda miRanda
719 chr6 34213675 34213675 1 + G A rs149013137 34213674 + 34213654 34213694 41 ATGTTCCATTCTTCGACATCCGTCATTGCTGCTGCTACCAG ATGTTCCATTCTTCGACATCCATCATTGCTGCTGCTACCAG < 41bp 1 0.47627572109144 1 0.42156994342804 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HMGA1 ENSG00000137309 UTR3 Human protein_coding chr6:34213674 chr6:34213675 . . 0 22 hm5C_associated_SNPs_6851 0 0 1 6 34213668 34213690 mRNA hsa-miR-497 HMGA1 miRanda miRanda
720 chr6 44221404 44221404 1 + G A rs11538984 44221411 + 44221391 44221431 41 CCACTGCAGCCTCGAGTGCCCCTGTCCCACCTGGCTCCCCC CCACTGCAGCCTCAAGTGCCCCTGTCCCACCTGGCTCCCCC < 41bp 1 0.346609353573376 1 0.0453041791915894 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSP90AB1 ENSG00000096384 UTR3 Human protein_coding chr6:44221411 chr6:44221404 . . 0 14 hm5C_associated_SNPs_6923 0 0 1 1 44221384 44221404 mRNA hsa-miR-485-5p HSP90AB1 miRanda miRanda
721 chr6 57049320 57049320 1 + A G rs143926222 57049327 + 57049307 57049347 41 TTTCCTGTCTGGCATGGAATCACGCAGTCACCTTGGGCATT TTTCCTGTCTGGCGTGGAATCACGCAGTCACCTTGGGCATT < 41bp 1 0.761861210451494 1 0.198816657066345 experiment 0.476277579097012 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BAG2 ENSG00000112208 UTR3 Human protein_coding chr6:57049327 chr6:57049320 . . 0 14 hm5C_associated_SNPs_6930 0 0 1 1 57049315 57049338 mRNA hsa-miR-134 BAG2 miRanda miRanda
722 chr6 64290586 64290586 1 + C T rs575129323 64290589 + 64290569 64290609 41 TGCTCACTTTATGTTTACATCTCCCACATTCATACCAATAT TGCTCACTTTATGTTTATATCTCCCACATTCATACCAATAT < 41bp 1 0.353979678545329 1 0.130936622619629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 UTR3 Human protein_coding chr6:64290589 chr6:64290586 . . 0 18 hm5C_associated_SNPs_6934 0 0 1 8 64290566 64290587 mRNA hsa-miR-30a PTP4A1 miRanda miRanda
723 chr6 64290586 64290586 1 + C T rs575129323 64290589 + 64290569 64290609 41 TGCTCACTTTATGTTTACATCTCCCACATTCATACCAATAT TGCTCACTTTATGTTTATATCTCCCACATTCATACCAATAT < 41bp 1 0.353979678545329 1 0.130936622619629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 UTR3 Human protein_coding chr6:64290589 chr6:64290586 . . 0 18 hm5C_associated_SNPs_6934 0 0 1 8 64290565 64290587 mRNA hsa-miR-30c PTP4A1 miRanda miRanda
724 chr6 64290586 64290586 1 + C T rs575129323 64290589 + 64290569 64290609 41 TGCTCACTTTATGTTTACATCTCCCACATTCATACCAATAT TGCTCACTTTATGTTTATATCTCCCACATTCATACCAATAT < 41bp 1 0.353979678545329 1 0.130936622619629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 UTR3 Human protein_coding chr6:64290589 chr6:64290586 . . 0 18 hm5C_associated_SNPs_6934 0 0 1 8 64290566 64290587 mRNA hsa-miR-30d PTP4A1 miRanda miRanda
725 chr6 64290586 64290586 1 + C T rs575129323 64290589 + 64290569 64290609 41 TGCTCACTTTATGTTTACATCTCCCACATTCATACCAATAT TGCTCACTTTATGTTTATATCTCCCACATTCATACCAATAT < 41bp 1 0.353979678545329 1 0.130936622619629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 UTR3 Human protein_coding chr6:64290589 chr6:64290586 . . 0 18 hm5C_associated_SNPs_6934 0 0 1 8 64290566 64290587 mRNA hsa-miR-30b PTP4A1 miRanda miRanda
726 chr6 64290586 64290586 1 + C T rs575129323 64290589 + 64290569 64290609 41 TGCTCACTTTATGTTTACATCTCCCACATTCATACCAATAT TGCTCACTTTATGTTTATATCTCCCACATTCATACCAATAT < 41bp 1 0.353979678545329 1 0.130936622619629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 UTR3 Human protein_coding chr6:64290589 chr6:64290586 . . 0 18 hm5C_associated_SNPs_6934 0 0 1 8 64290571 64290593 mRNA hsa-miR-122 PTP4A1 miRanda miRanda
727 chr6 64290586 64290586 1 + C T rs575129323 64290589 + 64290569 64290609 41 TGCTCACTTTATGTTTACATCTCCCACATTCATACCAATAT TGCTCACTTTATGTTTATATCTCCCACATTCATACCAATAT < 41bp 1 0.353979678545329 1 0.130936622619629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 UTR3 Human protein_coding chr6:64290589 chr6:64290586 . . 0 18 hm5C_associated_SNPs_6934 0 0 1 8 64290572 64290592 mRNA hsa-miR-143 PTP4A1 miRanda miRanda
728 chr6 64290586 64290586 1 + C T rs575129323 64290589 + 64290569 64290609 41 TGCTCACTTTATGTTTACATCTCCCACATTCATACCAATAT TGCTCACTTTATGTTTATATCTCCCACATTCATACCAATAT < 41bp 1 0.353979678545329 1 0.130936622619629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 UTR3 Human protein_coding chr6:64290589 chr6:64290586 . . 0 18 hm5C_associated_SNPs_6934 0 0 1 8 64290576 64290598 mRNA hsa-miR-299-3p PTP4A1 miRanda miRanda
729 chr6 64290586 64290586 1 + C T rs575129323 64290589 + 64290569 64290609 41 TGCTCACTTTATGTTTACATCTCCCACATTCATACCAATAT TGCTCACTTTATGTTTATATCTCCCACATTCATACCAATAT < 41bp 1 0.353979678545329 1 0.130936622619629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 UTR3 Human protein_coding chr6:64290589 chr6:64290586 . . 0 18 hm5C_associated_SNPs_6934 0 0 1 8 64290565 64290587 mRNA hsa-miR-30e PTP4A1 miRanda miRanda
730 chr6 88346196 88346196 1 + G T rs143108637 88346186 + 88346166 88346206 41 GGATTCAGAGGAGTATGCATCAGTCTTGCAGCTGCTGAGGT GGATTCAGAGGAGTATGCATCAGTCTTGCATCTGCTGAGGT < 41bp 1 0.224690198331979 1 0.598425209522247 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ORC3 ENSG00000135336 CDS Human protein_coding chr6:88346186 chr6:88346196 nonsynonymous SNV 0.797 4 31 hm5C_associated_SNPs_6947 0 0 1 2 88346179 88346200 mRNA hsa-miR-152 ORC3L miRanda miRanda
731 chr6 88346196 88346196 1 + G T rs143108637 88346186 + 88346166 88346206 41 GGATTCAGAGGAGTATGCATCAGTCTTGCAGCTGCTGAGGT GGATTCAGAGGAGTATGCATCAGTCTTGCATCTGCTGAGGT < 41bp 1 0.224690198331979 1 0.598425209522247 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ORC3 ENSG00000135336 CDS Human protein_coding chr6:88346186 chr6:88346196 nonsynonymous SNV 0.797 4 31 hm5C_associated_SNPs_6947 0 0 1 2 88346175 88346199 mRNA hsa-miR-454 ORC3L miRanda miRanda
732 chr6 117869594 117869594 1 + C T rs210622 117869589 + 117869569 117869609 41 CCTCAACCAGACGGCCATGACTGCCCTTTTGTGAACACAAT CCTCAACCAGACGGCCATGACTGCCTTTTTGTGAACACAAT < 41bp 1 0.511281190350373 1 0.237118571996689 experiment 0.977437619299255 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117869589 chr6:117869594 nonsynonymous SNV 0.995 2 26 hm5C_associated_SNPs_6960 0 0 1 2 117869594 117869614 mRNA hsa-miR-23a DCBLD1 miRanda miRanda
733 chr6 117869594 117869594 1 + C T rs210622 117869589 + 117869569 117869609 41 CCTCAACCAGACGGCCATGACTGCCCTTTTGTGAACACAAT CCTCAACCAGACGGCCATGACTGCCTTTTTGTGAACACAAT < 41bp 1 0.511281190350373 1 0.237118571996689 experiment 0.977437619299255 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117869589 chr6:117869594 nonsynonymous SNV 0.995 2 26 hm5C_associated_SNPs_6960 0 0 1 2 117869594 117869614 mRNA hsa-miR-23b DCBLD1 miRanda miRanda
734 chr6 118030453 118030453 1 + T C rs572493455 118030446 + 118030426 118030466 41 TTTATTTGTATTGGAAAATACTGTCTTTAAATTGTTTCTTG TTTATTTGTATTGGAAAATACTGTCTTCAAATTGTTTCTTG < 41bp 1 0.324676404173021 1 0.0562461018562317 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUS1 ENSG00000153989 UTR3 Human protein_coding chr6:118030446 chr6:118030453 . . 0 28 hm5C_associated_SNPs_6963 0 0 0 1 118030451 118030472 mRNA hsa-miR-505 NUS1 miRanda miRanda
735 chr6 130461644 130461644 1 + G A rs147937465 130461660 + 130461640 130461680 41 TAGTGTATTTTGAGTGGCATCAGTCTCACTCATCTTGGTGC TAGTATATTTTGAGTGGCATCAGTCTCACTCATCTTGGTGC < 41bp 1 0.190278332837334 1 0.145338863134384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control L3MBTL3 ENSG00000227678 ncRNA_intronic Human antisense chr6:130461660 chr6:130461644 . . 0 5 hm5C_associated_SNPs_6968 0 0 1 1 130461624 130461646 mRNA hsa-miR-329 L3MBTL3 miRanda miRanda
736 chr6 133138429 133138429 1 + C G rs115580799 133138418 + 133138398 133138438 41 AGACATACTTTAAAAACTGGCAATAGTAAAGCCATGTTACG AGACATACTTTAAAAACTGGCAATAGTAAAGGCATGTTACG < 41bp 1 0.588440684452277 1 0.101142644882202 experiment 0.823118631095447 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA33 ENSG00000200534 ncRNA_exonic Human snoRNA chr6:133138418 chr6:133138429 . . 0 32 hm5C_associated_SNPs_6990 0 0 1 2 133138411 133138433 mRNA hsa-miR-135a SNORA33 miRanda miRanda
737 chr6 133138429 133138429 1 + C G rs115580799 133138418 + 133138398 133138438 41 AGACATACTTTAAAAACTGGCAATAGTAAAGCCATGTTACG AGACATACTTTAAAAACTGGCAATAGTAAAGGCATGTTACG < 41bp 1 0.588440684452277 1 0.101142644882202 experiment 0.823118631095447 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA33 ENSG00000200534 ncRNA_exonic Human snoRNA chr6:133138418 chr6:133138429 . . 0 32 hm5C_associated_SNPs_6990 0 0 1 2 133138411 133138433 mRNA hsa-miR-135b SNORA33 miRanda miRanda
738 chr6 133138429 133138429 1 + C G rs115580799 133138441 + 133138421 133138461 41 TAGTAAAGCCATGTTACGAGCCTTAAGGACATTGAAGTCGT TAGTAAAGGCATGTTACGAGCCTTAAGGACATTGAAGTCGT < 41bp 1 0.241795921390194 1 0.123777061700821 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA33 ENSG00000200534 ncRNA_exonic Human snoRNA chr6:133138441 chr6:133138429 . . 0 9 hm5C_associated_SNPs_6991 0 0 1 2 133138411 133138433 mRNA hsa-miR-135a SNORA33 miRanda miRanda
739 chr6 133138429 133138429 1 + C G rs115580799 133138441 + 133138421 133138461 41 TAGTAAAGCCATGTTACGAGCCTTAAGGACATTGAAGTCGT TAGTAAAGGCATGTTACGAGCCTTAAGGACATTGAAGTCGT < 41bp 1 0.241795921390194 1 0.123777061700821 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA33 ENSG00000200534 ncRNA_exonic Human snoRNA chr6:133138441 chr6:133138429 . . 0 9 hm5C_associated_SNPs_6991 0 0 1 2 133138411 133138433 mRNA hsa-miR-135b SNORA33 miRanda miRanda
740 chr6 133138429 133138429 1 + C G rs115580799 133138442 + 133138422 133138462 41 AGTAAAGCCATGTTACGAGCCTTAAGGACATTGAAGTCGTT AGTAAAGGCATGTTACGAGCCTTAAGGACATTGAAGTCGTT < 41bp 1 0.455311375571573 1 0.432725369930267 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA33 ENSG00000200534 ncRNA_exonic Human snoRNA chr6:133138442 chr6:133138429 . . 0 8 hm5C_associated_SNPs_6992 0 0 1 2 133138411 133138433 mRNA hsa-miR-135a SNORA33 miRanda miRanda
741 chr6 133138429 133138429 1 + C G rs115580799 133138442 + 133138422 133138462 41 AGTAAAGCCATGTTACGAGCCTTAAGGACATTGAAGTCGTT AGTAAAGGCATGTTACGAGCCTTAAGGACATTGAAGTCGTT < 41bp 1 0.455311375571573 1 0.432725369930267 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA33 ENSG00000200534 ncRNA_exonic Human snoRNA chr6:133138442 chr6:133138429 . . 0 8 hm5C_associated_SNPs_6992 0 0 1 2 133138411 133138433 mRNA hsa-miR-135b SNORA33 miRanda miRanda
742 chr6 139114113 139114113 1 + A G rs6570282 139114114 + 139114094 139114134 41 ATGTGACTCGCTGTAATTCACCATAACTGGAGGCCTAGGCC ATGTGACTCGCTGTAATTCGCCATAACTGGAGGCCTAGGCC < 41bp 1 0.448731549396602 1 0.281993746757507 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC28A ENSG00000024862 UTR3 Human protein_coding chr6:139114114 chr6:139114113 . . 0 20 hm5C_associated_SNPs_7018 0 0 1 1 139114103 139114125 mRNA hsa-miR-145 CCDC28A miRanda miRanda
743 chr6 149731747 149731747 1 + A G rs578100209 149731745 + 149731725 149731765 41 TACTTTGCCCTCATGAGTTCCAATGTTGTGTGAAGACAGGC TACTTTGCCCTCATGAGTTCCAGTGTTGTGTGAAGACAGGC < 41bp 1 0.243333816989139 1 0.136009931564331 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAB2 ENSG00000055208 UTR3 Human protein_coding chr6:149731745 chr6:149731747 . . 0 23 hm5C_associated_SNPs_7033 0 0 1 1 149731735 149731758 mRNA hsa-miR-377 TAB2 miRanda miRanda
744 chr7 2702350 2702350 1 + C G rs116694861 2702362 + 2702342 2702382 41 CTGTCCCCCCTTGGGACTAACCACTAACCTCACCCCCAAAC CTGTCCCCGCTTGGGACTAACCACTAACCTCACCCCCAAAC < 41bp 1 0.178383304114396 1 0.0428435802459717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH3 ENSG00000136295 UTR3 Human protein_coding chr7:2702362 chr7:2702350 . . 0 9 hm5C_associated_SNPs_7111 0 0 1 1 2702346 2702367 mRNA hsa-miR-140-5p TTYH3 miRanda miRanda
745 chr7 5036428 5036428 1 + C A rs62444280 5036420 + 5036400 5036440 41 CTGTGGCCCTGTTCTCAGCCCTCTTCCCCAGTATGTAGCCC CTGTGGCCCTGTTCTCAGCCCTCTTCCCAAGTATGTAGCCC < 41bp 1 0.0614708281451658 1 0.0519283711910248 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5036420 chr7:5036428 . . 0 29 hm5C_associated_SNPs_7171 0 0 1 2 5036421 5036439 mRNA hsa-miR-221 RNF216L miRanda miRanda
746 chr7 5036428 5036428 1 + C A rs62444280 5036420 + 5036400 5036440 41 CTGTGGCCCTGTTCTCAGCCCTCTTCCCCAGTATGTAGCCC CTGTGGCCCTGTTCTCAGCCCTCTTCCCAAGTATGTAGCCC < 41bp 1 0.0614708281451658 1 0.0519283711910248 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5036420 chr7:5036428 . . 0 29 hm5C_associated_SNPs_7171 0 0 1 2 5036418 5036439 mRNA hsa-miR-222 RNF216L miRanda miRanda
747 chr7 5036428 5036428 1 + C A rs62444280 5036443 + 5036423 5036463 41 TTCCCCAGTATGTAGCCCTGCATTTCCTGGGCCTGTGGCTG TTCCCAAGTATGTAGCCCTGCATTTCCTGGGCCTGTGGCTG < 41bp 1 0.0291025980450232 1 0.022679328918457 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5036443 chr7:5036428 . . 0 6 hm5C_associated_SNPs_7172 0 0 1 2 5036421 5036439 mRNA hsa-miR-221 RNF216L miRanda miRanda
748 chr7 5036428 5036428 1 + C A rs62444280 5036443 + 5036423 5036463 41 TTCCCCAGTATGTAGCCCTGCATTTCCTGGGCCTGTGGCTG TTCCCAAGTATGTAGCCCTGCATTTCCTGGGCCTGTGGCTG < 41bp 1 0.0291025980450232 1 0.022679328918457 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5036443 chr7:5036428 . . 0 6 hm5C_associated_SNPs_7172 0 0 1 2 5036418 5036439 mRNA hsa-miR-222 RNF216L miRanda miRanda
749 chr7 5037672 5037672 1 + T C rs144121611 5037679 + 5037659 5037699 41 ATTCCTTAGCCAGTGTACCTCCTACCTCAGAGTCTATGTGA ATTCCTTAGCCAGCGTACCTCCTACCTCAGAGTCTATGTGA < 41bp 1 0.0292301408497024 1 0.132812649011612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5037679 chr7:5037672 . . 0 14 hm5C_associated_SNPs_7176 0 0 1 9 5037667 5037687 mRNA hsa-let-7a RNF216L miRanda miRanda
750 chr7 5037672 5037672 1 + T C rs144121611 5037679 + 5037659 5037699 41 ATTCCTTAGCCAGTGTACCTCCTACCTCAGAGTCTATGTGA ATTCCTTAGCCAGCGTACCTCCTACCTCAGAGTCTATGTGA < 41bp 1 0.0292301408497024 1 0.132812649011612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5037679 chr7:5037672 . . 0 14 hm5C_associated_SNPs_7176 0 0 1 9 5037666 5037687 mRNA hsa-let-7b RNF216L miRanda miRanda
751 chr7 5037672 5037672 1 + T C rs144121611 5037679 + 5037659 5037699 41 ATTCCTTAGCCAGTGTACCTCCTACCTCAGAGTCTATGTGA ATTCCTTAGCCAGCGTACCTCCTACCTCAGAGTCTATGTGA < 41bp 1 0.0292301408497024 1 0.132812649011612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5037679 chr7:5037672 . . 0 14 hm5C_associated_SNPs_7176 0 0 1 9 5037666 5037687 mRNA hsa-let-7c RNF216L miRanda miRanda
752 chr7 5037672 5037672 1 + T C rs144121611 5037679 + 5037659 5037699 41 ATTCCTTAGCCAGTGTACCTCCTACCTCAGAGTCTATGTGA ATTCCTTAGCCAGCGTACCTCCTACCTCAGAGTCTATGTGA < 41bp 1 0.0292301408497024 1 0.132812649011612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5037679 chr7:5037672 . . 0 14 hm5C_associated_SNPs_7176 0 0 1 9 5037667 5037687 mRNA hsa-let-7d RNF216L miRanda miRanda
753 chr7 5037672 5037672 1 + T C rs144121611 5037679 + 5037659 5037699 41 ATTCCTTAGCCAGTGTACCTCCTACCTCAGAGTCTATGTGA ATTCCTTAGCCAGCGTACCTCCTACCTCAGAGTCTATGTGA < 41bp 1 0.0292301408497024 1 0.132812649011612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5037679 chr7:5037672 . . 0 14 hm5C_associated_SNPs_7176 0 0 1 9 5037667 5037687 mRNA hsa-let-7e RNF216L miRanda miRanda
754 chr7 5037672 5037672 1 + T C rs144121611 5037679 + 5037659 5037699 41 ATTCCTTAGCCAGTGTACCTCCTACCTCAGAGTCTATGTGA ATTCCTTAGCCAGCGTACCTCCTACCTCAGAGTCTATGTGA < 41bp 1 0.0292301408497024 1 0.132812649011612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5037679 chr7:5037672 . . 0 14 hm5C_associated_SNPs_7176 0 0 1 9 5037669 5037687 mRNA hsa-let-7f RNF216L miRanda miRanda
755 chr7 5037672 5037672 1 + T C rs144121611 5037679 + 5037659 5037699 41 ATTCCTTAGCCAGTGTACCTCCTACCTCAGAGTCTATGTGA ATTCCTTAGCCAGCGTACCTCCTACCTCAGAGTCTATGTGA < 41bp 1 0.0292301408497024 1 0.132812649011612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5037679 chr7:5037672 . . 0 14 hm5C_associated_SNPs_7176 0 0 1 9 5037667 5037687 mRNA hsa-miR-98 RNF216L miRanda miRanda
756 chr7 5037672 5037672 1 + T C rs144121611 5037679 + 5037659 5037699 41 ATTCCTTAGCCAGTGTACCTCCTACCTCAGAGTCTATGTGA ATTCCTTAGCCAGCGTACCTCCTACCTCAGAGTCTATGTGA < 41bp 1 0.0292301408497024 1 0.132812649011612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5037679 chr7:5037672 . . 0 14 hm5C_associated_SNPs_7176 0 0 1 9 5037669 5037687 mRNA hsa-let-7g RNF216L miRanda miRanda
757 chr7 5037672 5037672 1 + T C rs144121611 5037679 + 5037659 5037699 41 ATTCCTTAGCCAGTGTACCTCCTACCTCAGAGTCTATGTGA ATTCCTTAGCCAGCGTACCTCCTACCTCAGAGTCTATGTGA < 41bp 1 0.0292301408497024 1 0.132812649011612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5037679 chr7:5037672 . . 0 14 hm5C_associated_SNPs_7176 0 0 1 9 5037667 5037687 mRNA hsa-let-7i RNF216L miRanda miRanda
758 chr7 5644959 5644959 1 + G A rs140594742 5644976 + 5644956 5644996 41 GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA GGCAACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA < 41bp 1 0.233863216234803 1 0.150693386793137 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5644976 chr7:5644959 nonsynonymous SNV 0.882 1 4 hm5C_associated_SNPs_7186 0 0 1 1 5644945 5644967 mRNA hsa-miR-122 FSCN1 miRanda miRanda
759 chr7 16745716 16745716 1 + G T rs7780235 16745735 + 16745715 16745755 41 TGGCTCAACAAGCACAATACCTAGGTTACCACACACCACTT TTGCTCAACAAGCACAATACCTAGGTTACCACACACCACTT < 41bp 1 0.775085040740381 1 0.229031443595886 experiment 0.449829918519238 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BZW2 ENSG00000235837 ncRNA_intronic Human antisense chr7:16745735 chr7:16745716 . . 0 2 hm5C_associated_SNPs_7214 0 0 1 1 16745714 16745731 mRNA hsa-miR-218 BZW2 miRanda miRanda
760 chr7 23221750 23221750 1 + G C rs368129535 23221740 + 23221720 23221760 41 TTCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTG TTCTTCCTTCAAGGCCGGTGCCGCTTTGGACATCGGTGCTG < 41bp 1 0.412507583159109 1 0.175082236528397 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221740 chr7:23221750 nonsynonymous SNV 0.999 1 31 hm5C_associated_SNPs_7223 0 0 1 3 23221737 23221760 mRNA hsa-miR-29a NUPL2 miRanda miRanda
761 chr7 23221750 23221750 1 + G C rs368129535 23221740 + 23221720 23221760 41 TTCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTG TTCTTCCTTCAAGGCCGGTGCCGCTTTGGACATCGGTGCTG < 41bp 1 0.412507583159109 1 0.175082236528397 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221740 chr7:23221750 nonsynonymous SNV 0.999 1 31 hm5C_associated_SNPs_7223 0 0 1 3 23221736 23221760 mRNA hsa-miR-29b NUPL2 miRanda miRanda
762 chr7 23221750 23221750 1 + G C rs368129535 23221740 + 23221720 23221760 41 TTCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTG TTCTTCCTTCAAGGCCGGTGCCGCTTTGGACATCGGTGCTG < 41bp 1 0.412507583159109 1 0.175082236528397 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221740 chr7:23221750 nonsynonymous SNV 0.999 1 31 hm5C_associated_SNPs_7223 0 0 1 3 23221737 23221760 mRNA hsa-miR-29c NUPL2 miRanda miRanda
763 chr7 23221750 23221750 1 + G C rs368129535 23221741 + 23221721 23221761 41 TCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTGG TCTTCCTTCAAGGCCGGTGCCGCTTTGGACATCGGTGCTGG < 41bp 1 0.586129395149356 1 0.114789605140686 experiment 0.827741209701289 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221741 chr7:23221750 nonsynonymous SNV 0.999 1 30 hm5C_associated_SNPs_7224 0 0 1 3 23221737 23221760 mRNA hsa-miR-29a NUPL2 miRanda miRanda
764 chr7 23221750 23221750 1 + G C rs368129535 23221741 + 23221721 23221761 41 TCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTGG TCTTCCTTCAAGGCCGGTGCCGCTTTGGACATCGGTGCTGG < 41bp 1 0.586129395149356 1 0.114789605140686 experiment 0.827741209701289 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221741 chr7:23221750 nonsynonymous SNV 0.999 1 30 hm5C_associated_SNPs_7224 0 0 1 3 23221736 23221760 mRNA hsa-miR-29b NUPL2 miRanda miRanda
765 chr7 23221750 23221750 1 + G C rs368129535 23221741 + 23221721 23221761 41 TCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTGG TCTTCCTTCAAGGCCGGTGCCGCTTTGGACATCGGTGCTGG < 41bp 1 0.586129395149356 1 0.114789605140686 experiment 0.827741209701289 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221741 chr7:23221750 nonsynonymous SNV 0.999 1 30 hm5C_associated_SNPs_7224 0 0 1 3 23221737 23221760 mRNA hsa-miR-29c NUPL2 miRanda miRanda
766 chr7 35944757 35944757 1 + C G rs150305906 35944746 + 35944726 35944766 41 CAAAATTGTGAAGCTAATGACCAACCTGTTTCTACCTATAT CAAAATTGTGAAGCTAATGACCAACCTGTTTGTACCTATAT < 41bp 1 0.0456849275798679 1 0.124957710504532 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT7 ENSG00000122545 UTR3 Human protein_coding chr7:35944746 chr7:35944757 . . 0 32 hm5C_associated_SNPs_7252 0 0 0 5 35944742 35944763 mRNA hsa-miR-196a SEPT7 miRanda miRanda
767 chr7 35944757 35944757 1 + C G rs150305906 35944746 + 35944726 35944766 41 CAAAATTGTGAAGCTAATGACCAACCTGTTTCTACCTATAT CAAAATTGTGAAGCTAATGACCAACCTGTTTGTACCTATAT < 41bp 1 0.0456849275798679 1 0.124957710504532 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT7 ENSG00000122545 UTR3 Human protein_coding chr7:35944746 chr7:35944757 . . 0 32 hm5C_associated_SNPs_7252 0 0 0 5 35944745 35944772 mRNA hsa-miR-217 SEPT7 miRanda miRanda
768 chr7 35944757 35944757 1 + C G rs150305906 35944746 + 35944726 35944766 41 CAAAATTGTGAAGCTAATGACCAACCTGTTTCTACCTATAT CAAAATTGTGAAGCTAATGACCAACCTGTTTGTACCTATAT < 41bp 1 0.0456849275798679 1 0.124957710504532 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT7 ENSG00000122545 UTR3 Human protein_coding chr7:35944746 chr7:35944757 . . 0 32 hm5C_associated_SNPs_7252 0 0 0 5 35944742 35944762 mRNA hsa-miR-379 SEPT7 miRanda miRanda
769 chr7 35944757 35944757 1 + C G rs150305906 35944746 + 35944726 35944766 41 CAAAATTGTGAAGCTAATGACCAACCTGTTTCTACCTATAT CAAAATTGTGAAGCTAATGACCAACCTGTTTGTACCTATAT < 41bp 1 0.0456849275798679 1 0.124957710504532 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT7 ENSG00000122545 UTR3 Human protein_coding chr7:35944746 chr7:35944757 . . 0 32 hm5C_associated_SNPs_7252 0 0 0 5 35944742 35944763 mRNA hsa-miR-196b SEPT7 miRanda miRanda
770 chr7 35944757 35944757 1 + C G rs150305906 35944746 + 35944726 35944766 41 CAAAATTGTGAAGCTAATGACCAACCTGTTTCTACCTATAT CAAAATTGTGAAGCTAATGACCAACCTGTTTGTACCTATAT < 41bp 1 0.0456849275798679 1 0.124957710504532 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT7 ENSG00000122545 UTR3 Human protein_coding chr7:35944746 chr7:35944757 . . 0 32 hm5C_associated_SNPs_7252 0 0 0 5 35944747 35944770 mRNA hsa-miR-448 SEPT7 miRanda miRanda
771 chr7 56067016 56067016 1 + G C rs4689 56066996 + 56066976 56067016 41 TTTGAAACACCCCGTGTTGTCCAGTATACCTTATAACACTG TTTGAAACACCCCGTGTTGTCCAGTATACCTTATAACACTC < 41bp 1 0.707054427543281 1 0.450327605009079 experiment 0.585891144913438 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NIPSNAP2 ENSG00000146729 UTR3 Human protein_coding chr7:56066996 chr7:56067016 . . 0 41 hm5C_associated_SNPs_7298 0 0 1 3 56066999 56067021 mRNA hsa-miR-24 GBAS miRanda miRanda
772 chr7 56067016 56067016 1 + G C rs4689 56066996 + 56066976 56067016 41 TTTGAAACACCCCGTGTTGTCCAGTATACCTTATAACACTG TTTGAAACACCCCGTGTTGTCCAGTATACCTTATAACACTC < 41bp 1 0.707054427543281 1 0.450327605009079 experiment 0.585891144913438 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NIPSNAP2 ENSG00000146729 UTR3 Human protein_coding chr7:56066996 chr7:56067016 . . 0 41 hm5C_associated_SNPs_7298 0 0 1 3 56067001 56067025 mRNA hsa-miR-373 GBAS miRanda miRanda
773 chr7 56067016 56067016 1 + G C rs4689 56066996 + 56066976 56067016 41 TTTGAAACACCCCGTGTTGTCCAGTATACCTTATAACACTG TTTGAAACACCCCGTGTTGTCCAGTATACCTTATAACACTC < 41bp 1 0.707054427543281 1 0.450327605009079 experiment 0.585891144913438 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NIPSNAP2 ENSG00000146729 UTR3 Human protein_coding chr7:56066996 chr7:56067016 . . 0 41 hm5C_associated_SNPs_7298 0 0 1 3 56067003 56067025 mRNA hsa-miR-520c-3p GBAS miRanda miRanda
774 chr7 65617595 65617595 1 + T C rs875971 65617613 + 65617593 65617633 41 TGTGCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGT TGCGCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGT < 41bp 1 0.517671983058386 1 0.647464156150818 experiment 0.964656033883227 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRCP ENSG00000234185 ncRNA_intronic Human antisense chr7:65617613 chr7:65617595 . . 0 3 hm5C_associated_SNPs_7305 0 1 1 1 65617594 65617616 mRNA hsa-miR-491-5p CRCP miRanda miRanda
775 chr7 100861475 100861475 1 + C T rs10215517 100861474 + 100861454 100861494 41 CTTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACT CTTCCGACAGTTGTGTTGTGCTAATGGTGGAGAAGAAAACT < 41bp 1 0.217668319544084 1 0.126967191696167 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861474 chr7:100861475 . . 0 22 hm5C_associated_SNPs_7471 0 0 1 4 100861456 100861479 mRNA hsa-miR-32 ZNHIT1 miRanda miRanda
776 chr7 100861475 100861475 1 + C T rs10215517 100861474 + 100861454 100861494 41 CTTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACT CTTCCGACAGTTGTGTTGTGCTAATGGTGGAGAAGAAAACT < 41bp 1 0.217668319544084 1 0.126967191696167 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861474 chr7:100861475 . . 0 22 hm5C_associated_SNPs_7471 0 0 1 4 100861457 100861478 mRNA hsa-miR-96 ZNHIT1 miRanda miRanda
777 chr7 100861475 100861475 1 + C T rs10215517 100861474 + 100861454 100861494 41 CTTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACT CTTCCGACAGTTGTGTTGTGCTAATGGTGGAGAAGAAAACT < 41bp 1 0.217668319544084 1 0.126967191696167 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861474 chr7:100861475 . . 0 22 hm5C_associated_SNPs_7471 0 0 1 4 100861459 100861479 mRNA hsa-miR-363 ZNHIT1 miRanda miRanda
778 chr7 100861475 100861475 1 + C T rs10215517 100861474 + 100861454 100861494 41 CTTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACT CTTCCGACAGTTGTGTTGTGCTAATGGTGGAGAAGAAAACT < 41bp 1 0.217668319544084 1 0.126967191696167 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861474 chr7:100861475 . . 0 22 hm5C_associated_SNPs_7471 0 0 1 4 100861457 100861478 mRNA hsa-miR-1271 ZNHIT1 miRanda miRanda
779 chr7 100861476 100861476 1 + A G rs58033606 100861474 + 100861454 100861494 41 CTTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACT CTTCCGACAGTTGTGTTGTGCCGATGGTGGAGAAGAAAACT < 41bp 1 0.176258731468288 1 0.360364556312561 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861474 chr7:100861476 . . 0 23 hm5C_associated_SNPs_7472 0 0 1 4 100861456 100861479 mRNA hsa-miR-32 ZNHIT1 miRanda miRanda
780 chr7 100861476 100861476 1 + A G rs58033606 100861474 + 100861454 100861494 41 CTTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACT CTTCCGACAGTTGTGTTGTGCCGATGGTGGAGAAGAAAACT < 41bp 1 0.176258731468288 1 0.360364556312561 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861474 chr7:100861476 . . 0 23 hm5C_associated_SNPs_7472 0 0 1 4 100861457 100861478 mRNA hsa-miR-96 ZNHIT1 miRanda miRanda
781 chr7 100861476 100861476 1 + A G rs58033606 100861474 + 100861454 100861494 41 CTTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACT CTTCCGACAGTTGTGTTGTGCCGATGGTGGAGAAGAAAACT < 41bp 1 0.176258731468288 1 0.360364556312561 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861474 chr7:100861476 . . 0 23 hm5C_associated_SNPs_7472 0 0 1 4 100861459 100861479 mRNA hsa-miR-363 ZNHIT1 miRanda miRanda
782 chr7 100861476 100861476 1 + A G rs58033606 100861474 + 100861454 100861494 41 CTTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACT CTTCCGACAGTTGTGTTGTGCCGATGGTGGAGAAGAAAACT < 41bp 1 0.176258731468288 1 0.360364556312561 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861474 chr7:100861476 . . 0 23 hm5C_associated_SNPs_7472 0 0 1 4 100861457 100861478 mRNA hsa-miR-1271 ZNHIT1 miRanda miRanda
783 chr7 100861476 100861476 1 + A G rs58033606 100861475 + 100861455 100861495 41 TTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACTT TTCCGACAGTTGTGTTGTGCCGATGGTGGAGAAGAAAACTT < 41bp 1 0.494776661053751 1 0.710920035839081 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861475 chr7:100861476 . . 0 22 hm5C_associated_SNPs_7473 0 0 1 4 100861456 100861479 mRNA hsa-miR-32 ZNHIT1 miRanda miRanda
784 chr7 100861476 100861476 1 + A G rs58033606 100861475 + 100861455 100861495 41 TTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACTT TTCCGACAGTTGTGTTGTGCCGATGGTGGAGAAGAAAACTT < 41bp 1 0.494776661053751 1 0.710920035839081 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861475 chr7:100861476 . . 0 22 hm5C_associated_SNPs_7473 0 0 1 4 100861457 100861478 mRNA hsa-miR-96 ZNHIT1 miRanda miRanda
785 chr7 100861476 100861476 1 + A G rs58033606 100861475 + 100861455 100861495 41 TTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACTT TTCCGACAGTTGTGTTGTGCCGATGGTGGAGAAGAAAACTT < 41bp 1 0.494776661053751 1 0.710920035839081 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861475 chr7:100861476 . . 0 22 hm5C_associated_SNPs_7473 0 0 1 4 100861459 100861479 mRNA hsa-miR-363 ZNHIT1 miRanda miRanda
786 chr7 100861476 100861476 1 + A G rs58033606 100861475 + 100861455 100861495 41 TTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACTT TTCCGACAGTTGTGTTGTGCCGATGGTGGAGAAGAAAACTT < 41bp 1 0.494776661053751 1 0.710920035839081 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861475 chr7:100861476 . . 0 22 hm5C_associated_SNPs_7473 0 0 1 4 100861457 100861478 mRNA hsa-miR-1271 ZNHIT1 miRanda miRanda
787 chr7 100867240 100867240 1 + G A rs144254789 100867232 + 100867212 100867252 41 CTGCAGGTGTCTGAAGTGGACTGTGTGAGCCTGGGCATTCC CTGCAGGTGTCTGAAGTGGACTGTGTGAACCTGGGCATTCC < 41bp 1 0.671890950387505 1 0.113946288824081 experiment 0.65621809922499 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 UTR3 Human protein_coding chr7:100867232 chr7:100867240 . . 0 29 hm5C_associated_SNPs_7476 0 0 1 2 100867240 100867258 mRNA hsa-miR-330-5p ZNHIT1 miRanda miRanda
788 chr7 100867240 100867240 1 + G A rs144254789 100867232 + 100867212 100867252 41 CTGCAGGTGTCTGAAGTGGACTGTGTGAGCCTGGGCATTCC CTGCAGGTGTCTGAAGTGGACTGTGTGAACCTGGGCATTCC < 41bp 1 0.671890950387505 1 0.113946288824081 experiment 0.65621809922499 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 UTR3 Human protein_coding chr7:100867232 chr7:100867240 . . 0 29 hm5C_associated_SNPs_7476 0 0 1 2 100867240 100867258 mRNA hsa-miR-326 ZNHIT1 miRanda miRanda
789 chr7 116437606 116437606 1 + G A rs1621 116437607 + 116437587 116437627 41 TCTGTGGAATTTTGTGCTTGCTACTGTATAGTGCATGTGGT TCTGTGGAATTTTGTGCTTACTACTGTATAGTGCATGTGGT < 41bp 1 0.478570962049128 1 0.111973226070404 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MET ENSG00000105976 UTR3 Human protein_coding chr7:116437607 chr7:116437606 . . 0 20 hm5C_associated_SNPs_7501 1 0 1 6 116437587 116437609 mRNA hsa-miR-15a MET miRanda miRanda
790 chr7 116437606 116437606 1 + G A rs1621 116437607 + 116437587 116437627 41 TCTGTGGAATTTTGTGCTTGCTACTGTATAGTGCATGTGGT TCTGTGGAATTTTGTGCTTACTACTGTATAGTGCATGTGGT < 41bp 1 0.478570962049128 1 0.111973226070404 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MET ENSG00000105976 UTR3 Human protein_coding chr7:116437607 chr7:116437606 . . 0 20 hm5C_associated_SNPs_7501 1 0 1 6 116437590 116437613 mRNA hsa-miR-148a MET miRanda miRanda
791 chr7 116437606 116437606 1 + G A rs1621 116437607 + 116437587 116437627 41 TCTGTGGAATTTTGTGCTTGCTACTGTATAGTGCATGTGGT TCTGTGGAATTTTGTGCTTACTACTGTATAGTGCATGTGGT < 41bp 1 0.478570962049128 1 0.111973226070404 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MET ENSG00000105976 UTR3 Human protein_coding chr7:116437607 chr7:116437606 . . 0 20 hm5C_associated_SNPs_7501 1 0 1 6 116437591 116437613 mRNA hsa-miR-152 MET miRanda miRanda
792 chr7 116437606 116437606 1 + G A rs1621 116437607 + 116437587 116437627 41 TCTGTGGAATTTTGTGCTTGCTACTGTATAGTGCATGTGGT TCTGTGGAATTTTGTGCTTACTACTGTATAGTGCATGTGGT < 41bp 1 0.478570962049128 1 0.111973226070404 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MET ENSG00000105976 UTR3 Human protein_coding chr7:116437607 chr7:116437606 . . 0 20 hm5C_associated_SNPs_7501 1 0 1 6 116437588 116437609 mRNA hsa-miR-195 MET miRanda miRanda
793 chr7 116437606 116437606 1 + G A rs1621 116437607 + 116437587 116437627 41 TCTGTGGAATTTTGTGCTTGCTACTGTATAGTGCATGTGGT TCTGTGGAATTTTGTGCTTACTACTGTATAGTGCATGTGGT < 41bp 1 0.478570962049128 1 0.111973226070404 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MET ENSG00000105976 UTR3 Human protein_coding chr7:116437607 chr7:116437606 . . 0 20 hm5C_associated_SNPs_7501 1 0 1 6 116437590 116437612 mRNA hsa-miR-130b MET miRanda miRanda
794 chr7 116437606 116437606 1 + G A rs1621 116437607 + 116437587 116437627 41 TCTGTGGAATTTTGTGCTTGCTACTGTATAGTGCATGTGGT TCTGTGGAATTTTGTGCTTACTACTGTATAGTGCATGTGGT < 41bp 1 0.478570962049128 1 0.111973226070404 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MET ENSG00000105976 UTR3 Human protein_coding chr7:116437607 chr7:116437606 . . 0 20 hm5C_associated_SNPs_7501 1 0 1 6 116437590 116437613 mRNA hsa-miR-148b MET miRanda miRanda
795 chr7 130145329 130145329 1 + C T rs190221868 130145326 + 130145306 130145346 41 AAGGGGGGCTCCTTCCCTCTCCTCGAATGACGTTATGGGCA AAGGGGGGCTCCTTCCCTCTCCTTGAATGACGTTATGGGCA < 41bp 1 0.0938923234914285 1 0.739928245544434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEST ENSG00000106484 UTR3 Human protein_coding chr7:130145326 chr7:130145329 . . 0 24 hm5C_associated_SNPs_7560 0 0 0 2 130145329 130145353 mRNA hsa-miR-34a MEST miRanda miRanda
796 chr7 130145329 130145329 1 + C T rs190221868 130145326 + 130145306 130145346 41 AAGGGGGGCTCCTTCCCTCTCCTCGAATGACGTTATGGGCA AAGGGGGGCTCCTTCCCTCTCCTTGAATGACGTTATGGGCA < 41bp 1 0.0938923234914285 1 0.739928245544434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEST ENSG00000106484 UTR3 Human protein_coding chr7:130145326 chr7:130145329 . . 0 24 hm5C_associated_SNPs_7560 0 0 0 2 130145329 130145353 mRNA hsa-miR-34c-5p MEST miRanda miRanda
797 chr7 130145329 130145329 1 + C T rs190221868 130145327 + 130145307 130145347 41 AGGGGGGCTCCTTCCCTCTCCTCGAATGACGTTATGGGCAC AGGGGGGCTCCTTCCCTCTCCTTGAATGACGTTATGGGCAC < 41bp 1 0.636852221862453 1 0.756649374961853 experiment 0.726295556275094 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEST ENSG00000106484 UTR3 Human protein_coding chr7:130145327 chr7:130145329 . . 0 23 hm5C_associated_SNPs_7561 0 0 0 2 130145329 130145353 mRNA hsa-miR-34a MEST miRanda miRanda
798 chr7 130145329 130145329 1 + C T rs190221868 130145327 + 130145307 130145347 41 AGGGGGGCTCCTTCCCTCTCCTCGAATGACGTTATGGGCAC AGGGGGGCTCCTTCCCTCTCCTTGAATGACGTTATGGGCAC < 41bp 1 0.636852221862453 1 0.756649374961853 experiment 0.726295556275094 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEST ENSG00000106484 UTR3 Human protein_coding chr7:130145327 chr7:130145329 . . 0 23 hm5C_associated_SNPs_7561 0 0 0 2 130145329 130145353 mRNA hsa-miR-34c-5p MEST miRanda miRanda
799 chr7 140404746 140404746 1 + C T rs79658946 140404750 + 140404730 140404770 41 ACTGAAGGTGTAGACTCAGCCTCACTCTGTACAAGTGGGTG ACTGAAGGTGTAGACTTAGCCTCACTCTGTACAAGTGGGTG < 41bp 1 0.244801045967781 1 0.213245034217834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB2 ENSG00000090266 UTR3 Human protein_coding chr7:140404750 chr7:140404746 . . 0 17 hm5C_associated_SNPs_7577 0 0 1 3 140404737 140404759 mRNA hsa-miR-125a-3p NDUFB2 miRanda miRanda
800 chr7 140404746 140404746 1 + C T rs79658946 140404750 + 140404730 140404770 41 ACTGAAGGTGTAGACTCAGCCTCACTCTGTACAAGTGGGTG ACTGAAGGTGTAGACTTAGCCTCACTCTGTACAAGTGGGTG < 41bp 1 0.244801045967781 1 0.213245034217834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB2 ENSG00000090266 UTR3 Human protein_coding chr7:140404750 chr7:140404746 . . 0 17 hm5C_associated_SNPs_7577 0 0 1 3 140404735 140404753 mRNA hsa-miR-485-5p NDUFB2 miRanda miRanda
801 chr7 140404746 140404746 1 + C T rs79658946 140404750 + 140404730 140404770 41 ACTGAAGGTGTAGACTCAGCCTCACTCTGTACAAGTGGGTG ACTGAAGGTGTAGACTTAGCCTCACTCTGTACAAGTGGGTG < 41bp 1 0.244801045967781 1 0.213245034217834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB2 ENSG00000090266 UTR3 Human protein_coding chr7:140404750 chr7:140404746 . . 0 17 hm5C_associated_SNPs_7577 0 0 1 3 140404732 140404753 mRNA hsa-miR-485-5p NDUFB2 miRanda miRanda
802 chr7 140404760 140404760 1 + A G rs201056308 140404750 + 140404730 140404770 41 ACTGAAGGTGTAGACTCAGCCTCACTCTGTACAAGTGGGTG ACTGAAGGTGTAGACTCAGCCTCACTCTGTGCAAGTGGGTG < 41bp 1 0.179370460949523 1 0.135564684867859 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB2 ENSG00000090266 UTR3 Human protein_coding chr7:140404750 chr7:140404760 . . 0 31 hm5C_associated_SNPs_7578 0 0 1 1 140404750 140404763 mRNA hsa-miR-149 NDUFB2 miRanda miRanda
803 chr7 156763389 156763389 1 + C T rs576261274 156763377 + 156763357 156763397 41 CAAAGTGCTGGGATTACAGGCTTGAGCCACCACGCCCAGCT CAAAGTGCTGGGATTACAGGCTTGAGCCACCATGCCCAGCT < 41bp 1 0.601481591260921 1 0.203274041414261 experiment 0.797036817478159 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NOM1 ENSG00000146909 UTR3 Human protein_coding chr7:156763377 chr7:156763389 . . 0 33 hm5C_associated_SNPs_7733 0 0 0 2 156763385 156763407 mRNA hsa-miR-23a NOM1 miRanda miRanda
804 chr7 156763389 156763389 1 + C T rs576261274 156763377 + 156763357 156763397 41 CAAAGTGCTGGGATTACAGGCTTGAGCCACCACGCCCAGCT CAAAGTGCTGGGATTACAGGCTTGAGCCACCATGCCCAGCT < 41bp 1 0.601481591260921 1 0.203274041414261 experiment 0.797036817478159 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NOM1 ENSG00000146909 UTR3 Human protein_coding chr7:156763377 chr7:156763389 . . 0 33 hm5C_associated_SNPs_7733 0 0 0 2 156763385 156763407 mRNA hsa-miR-23b NOM1 miRanda miRanda
805 chr8 8890468 8890468 1 + C G rs145487375 8890481 + 8890461 8890501 41 CTCGAGACCAGAGACTGTGACTTCTGCATCTTTGATTCCAG CTCGAGAGCAGAGACTGTGACTTCTGCATCTTTGATTCCAG < 41bp 1 0.475179384070997 1 0.232608288526535 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ERI1 ENSG00000104626 UTR3 Human protein_coding chr8:8890481 chr8:8890468 . . 0 8 hm5C_associated_SNPs_7770 0 0 1 3 8890461 8890481 mRNA hsa-miR-27a ERI1 miRanda miRanda
806 chr8 8890468 8890468 1 + C G rs145487375 8890481 + 8890461 8890501 41 CTCGAGACCAGAGACTGTGACTTCTGCATCTTTGATTCCAG CTCGAGAGCAGAGACTGTGACTTCTGCATCTTTGATTCCAG < 41bp 1 0.475179384070997 1 0.232608288526535 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ERI1 ENSG00000104626 UTR3 Human protein_coding chr8:8890481 chr8:8890468 . . 0 8 hm5C_associated_SNPs_7770 0 0 1 3 8890461 8890484 mRNA hsa-miR-224 ERI1 miRanda miRanda
807 chr8 8890468 8890468 1 + C G rs145487375 8890481 + 8890461 8890501 41 CTCGAGACCAGAGACTGTGACTTCTGCATCTTTGATTCCAG CTCGAGAGCAGAGACTGTGACTTCTGCATCTTTGATTCCAG < 41bp 1 0.475179384070997 1 0.232608288526535 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ERI1 ENSG00000104626 UTR3 Human protein_coding chr8:8890481 chr8:8890468 . . 0 8 hm5C_associated_SNPs_7770 0 0 1 3 8890463 8890481 mRNA hsa-miR-27b ERI1 miRanda miRanda
808 chr8 19824342 19824342 1 + T C rs191751442 19824339 + 19824319 19824359 41 TCAGGCTTGGAATGAATTCTCTCTAAAAATAAAATGATGTA TCAGGCTTGGAATGAATTCTCTCCAAAAATAAAATGATGTA < 41bp 1 0.785970050825794 1 0.889413714408875 experiment 0.428059898348411 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LPL ENSG00000175445 UTR3 Human protein_coding chr8:19824339 chr8:19824342 . . 0 24 hm5C_associated_SNPs_7805 0 0 1 1 19824324 19824343 mRNA hsa-miR-185 LPL miRanda miRanda
809 chr8 25270297 25270297 1 + T C rs144441818 25270287 + 25270267 25270307 41 AGAGATTTCCATTTCTGCTGCCAGAGCTGGTATTTGCCTGC AGAGATTTCCATTTCTGCTGCCAGAGCTGGCATTTGCCTGC < 41bp 1 0.334139781577614 1 0.471562415361404 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DOCK5 ENSG00000147459 UTR3 Human protein_coding chr8:25270287 chr8:25270297 . . 0 31 hm5C_associated_SNPs_7835 0 0 1 1 25270289 25270311 mRNA hsa-miR-214 DOCK5 miRanda miRanda
810 chr8 25270306 25270306 1 + G A rs139487703 25270287 + 25270267 25270307 41 AGAGATTTCCATTTCTGCTGCCAGAGCTGGTATTTGCCTGC AGAGATTTCCATTTCTGCTGCCAGAGCTGGTATTTGCCTAC < 41bp 1 0.302495671910111 1 0.780180394649506 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DOCK5 ENSG00000147459 UTR3 Human protein_coding chr8:25270287 chr8:25270306 . . 0 40 hm5C_associated_SNPs_7836 0 0 1 2 25270289 25270311 mRNA hsa-miR-214 DOCK5 miRanda miRanda
811 chr8 25270306 25270306 1 + G A rs139487703 25270287 + 25270267 25270307 41 AGAGATTTCCATTTCTGCTGCCAGAGCTGGTATTTGCCTGC AGAGATTTCCATTTCTGCTGCCAGAGCTGGTATTTGCCTAC < 41bp 1 0.302495671910111 1 0.780180394649506 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DOCK5 ENSG00000147459 UTR3 Human protein_coding chr8:25270287 chr8:25270306 . . 0 40 hm5C_associated_SNPs_7836 0 0 1 2 25270305 25270330 mRNA hsa-miR-191 DOCK5 miRanda miRanda
812 chr8 41355096 41355096 1 + C T rs17656952 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTTGGCGGCCAGTCATATCTCGAAGGTTGT < 41bp 1 0.13170485894955 1 0.165201902389526 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355096 synonymous SNV . 0 14 hm5C_associated_SNPs_7883 0 0 1 2 41355086 41355107 mRNA hsa-miR-193a-3p GOLGA7 miRanda miRanda
813 chr8 41355096 41355096 1 + C T rs17656952 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTTGGCGGCCAGTCATATCTCGAAGGTTGT < 41bp 1 0.13170485894955 1 0.165201902389526 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355096 synonymous SNV . 0 14 hm5C_associated_SNPs_7883 0 0 1 2 41355086 41355107 mRNA hsa-miR-193b GOLGA7 miRanda miRanda
814 chr8 48877227 48877227 1 + T C rs145966797 48877243 + 48877223 48877263 41 ACCATTCAACGCATTGAAGACTAAGAATATGAGAAACCTGA ACCACTCAACGCATTGAAGACTAAGAATATGAGAAACCTGA < 41bp 1 0.182768517911881 1 0.378124624490738 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48877243 chr8:48877227 nonsynonymous SNV 0.983 2 5 hm5C_associated_SNPs_7927 0 0 1 3 48877203 48877228 mRNA hsa-miR-135a MCM4 miRanda miRanda
815 chr8 48877227 48877227 1 + T C rs145966797 48877243 + 48877223 48877263 41 ACCATTCAACGCATTGAAGACTAAGAATATGAGAAACCTGA ACCACTCAACGCATTGAAGACTAAGAATATGAGAAACCTGA < 41bp 1 0.182768517911881 1 0.378124624490738 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48877243 chr8:48877227 nonsynonymous SNV 0.983 2 5 hm5C_associated_SNPs_7927 0 0 1 3 48877203 48877228 mRNA hsa-miR-135b MCM4 miRanda miRanda
816 chr8 48877227 48877227 1 + T C rs145966797 48877243 + 48877223 48877263 41 ACCATTCAACGCATTGAAGACTAAGAATATGAGAAACCTGA ACCACTCAACGCATTGAAGACTAAGAATATGAGAAACCTGA < 41bp 1 0.182768517911881 1 0.378124624490738 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48877243 chr8:48877227 nonsynonymous SNV 0.983 2 5 hm5C_associated_SNPs_7927 0 0 1 3 48877216 48877234 mRNA hsa-miR-653 MCM4 miRanda miRanda
817 chr8 48889535 48889535 1 + T C rs17334542 48889518 + 48889498 48889538 41 GTATCTGTTTTCATTTTTTTCACGTTATAAATAAAAATACT GTATCTGTTTTCATTTTTTTCACGTTATAAATAAAAACACT < 41bp 1 0.381431338173762 1 0.407413095235825 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCM4 ENSG00000104738 UTR3 Human protein_coding chr8:48889518 chr8:48889535 . . 0 38 hm5C_associated_SNPs_7928 0 0 1 1 48889526 48889546 mRNA hsa-miR-338-3p MCM4 miRanda miRanda
818 chr8 61533373 61533373 1 + T C rs368529941 61533362 + 61533342 61533382 41 GTCTAGCTGCCCAACGGGGCCTACTCACTTATTCTTTCACC GTCTAGCTGCCCAACGGGGCCTACTCACTTACTCTTTCACC < 41bp 1 0.43928056696383 1 0.0357897877693176 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB2A ENSG00000104388 UTR3 Human protein_coding chr8:61533362 chr8:61533373 . . 0 32 hm5C_associated_SNPs_7936 0 0 1 1 61533358 61533379 mRNA hsa-miR-186 RAB2A miRanda miRanda
819 chr8 66621875 66621875 1 + C T rs565230085 66621886 + 66621866 66621906 41 AATAGGAACCAGATGATGTTCACTGCTGAAATTCCATAATG AATAGGAACTAGATGATGTTCACTGCTGAAATTCCATAATG < 41bp 1 0.79456625874471 1 0.0894803404808044 experiment 0.410867482510581 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTFR1 ENSG00000066855 UTR3 Human protein_coding chr8:66621886 chr8:66621875 . . 0 10 hm5C_associated_SNPs_7940 0 0 0 1 66621874 66621894 mRNA hsa-miR-128 MTFR1 miRanda miRanda
820 chr8 87572903 87572903 1 + A G rs150559243 87572900 + 87572880 87572920 41 CATAAGAACTGTGATTCCAGCAAACTAGGGTAATTGGTGCC CATAAGAACTGTGATTCCAGCAAGCTAGGGTAATTGGTGCC < 41bp 1 0.565941789048802 1 0.742050528526306 experiment 0.868116421902395 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE3 ENSG00000085719 UTR3 Human protein_coding chr8:87572900 chr8:87572903 . . 0 24 hm5C_associated_SNPs_7964 0 0 1 1 87572900 87572923 mRNA hsa-miR-506 CPNE3 miRanda miRanda
821 chr8 101165832 101165832 1 + T C rs148821867 101165850 + 101165830 101165870 41 TATGTGAATGTGGTTGGTCTCTCTTGCTTTCAAAATATCTT TACGTGAATGTGGTTGGTCTCTCTTGCTTTCAAAATATCTT < 41bp 1 0.349980927341397 1 0.0964289903640747 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLR2K ENSG00000147669 UTR3 Human protein_coding chr8:101165850 chr8:101165832 . . 0 3 hm5C_associated_SNPs_7983 0 0 1 4 101165819 101165841 mRNA hsa-miR-181a POLR2K miRanda miRanda
822 chr8 101165832 101165832 1 + T C rs148821867 101165850 + 101165830 101165870 41 TATGTGAATGTGGTTGGTCTCTCTTGCTTTCAAAATATCTT TACGTGAATGTGGTTGGTCTCTCTTGCTTTCAAAATATCTT < 41bp 1 0.349980927341397 1 0.0964289903640747 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLR2K ENSG00000147669 UTR3 Human protein_coding chr8:101165850 chr8:101165832 . . 0 3 hm5C_associated_SNPs_7983 0 0 1 4 101165817 101165841 mRNA hsa-miR-181b POLR2K miRanda miRanda
823 chr8 101165832 101165832 1 + T C rs148821867 101165850 + 101165830 101165870 41 TATGTGAATGTGGTTGGTCTCTCTTGCTTTCAAAATATCTT TACGTGAATGTGGTTGGTCTCTCTTGCTTTCAAAATATCTT < 41bp 1 0.349980927341397 1 0.0964289903640747 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLR2K ENSG00000147669 UTR3 Human protein_coding chr8:101165850 chr8:101165832 . . 0 3 hm5C_associated_SNPs_7983 0 0 1 4 101165821 101165841 mRNA hsa-miR-181c POLR2K miRanda miRanda
824 chr8 101165832 101165832 1 + T C rs148821867 101165850 + 101165830 101165870 41 TATGTGAATGTGGTTGGTCTCTCTTGCTTTCAAAATATCTT TACGTGAATGTGGTTGGTCTCTCTTGCTTTCAAAATATCTT < 41bp 1 0.349980927341397 1 0.0964289903640747 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLR2K ENSG00000147669 UTR3 Human protein_coding chr8:101165850 chr8:101165832 . . 0 3 hm5C_associated_SNPs_7983 0 0 1 4 101165819 101165841 mRNA hsa-miR-181d POLR2K miRanda miRanda
825 chr8 107754473 107754473 1 + G A rs1681904 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTGGTGCGTTAGCATCTGAACCACTGAAAGTGAGTGATGGC < 41bp 1 0.0768543113175255 1 0.0341335237026215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754473 synonymous SNV . 0 20 hm5C_associated_SNPs_7995 0 0 0 1 107754455 107754476 mRNA hsa-miR-24 OXR1 miRanda miRanda
826 chr8 107754473 107754473 1 + G A rs1681904 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TGGTGCGTTAGCATCTGAACCACTGAAAGTGAGTGATGGCT < 41bp 1 0.184446076882453 1 0.101689368486404 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754473 synonymous SNV . 0 19 hm5C_associated_SNPs_7996 0 0 0 1 107754455 107754476 mRNA hsa-miR-24 OXR1 miRanda miRanda
827 chr9 21859379 21859379 1 + T G rs62556500 21859391 + 21859371 21859411 41 ACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT ACCATACCGCAGATAGGGTCCACAGAATGGTCAGAAACCCT < 41bp 1 0.311530670450125 1 0.251135289669037 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859391 chr9:21859379 synonymous SNV . 0 9 hm5C_associated_SNPs_8119 1 0 1 1 21859363 21859381 mRNA hsa-miR-202 MTAP miRanda miRanda
828 chr9 36163665 36163665 1 + G T rs7874174 36163676 + 36163656 36163696 41 AAGGTCCATGTGGGAGGGACCAACCCAGATGCCCTGCTGAG AAGGTCCATTTGGGAGGGACCAACCCAGATGCCCTGCTGAG < 41bp 1 0.261759359380114 1 0.226966261863708 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLIPR2 ENSG00000122694 UTR3 Human protein_coding chr9:36163676 chr9:36163665 . . 0 10 hm5C_associated_SNPs_8143 0 0 0 2 36163658 36163679 mRNA hsa-miR-133a GLIPR2 miRanda miRanda
829 chr9 36163665 36163665 1 + G T rs7874174 36163676 + 36163656 36163696 41 AAGGTCCATGTGGGAGGGACCAACCCAGATGCCCTGCTGAG AAGGTCCATTTGGGAGGGACCAACCCAGATGCCCTGCTGAG < 41bp 1 0.261759359380114 1 0.226966261863708 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLIPR2 ENSG00000122694 UTR3 Human protein_coding chr9:36163676 chr9:36163665 . . 0 10 hm5C_associated_SNPs_8143 0 0 0 2 36163658 36163679 mRNA hsa-miR-133b GLIPR2 miRanda miRanda
830 chr9 36163671 36163671 1 + G T rs74499081 36163676 + 36163656 36163696 41 AAGGTCCATGTGGGAGGGACCAACCCAGATGCCCTGCTGAG AAGGTCCATGTGGGATGGACCAACCCAGATGCCCTGCTGAG < 41bp 1 0.26830822608398 1 0.191014498472214 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLIPR2 ENSG00000122694 UTR3 Human protein_coding chr9:36163676 chr9:36163671 . . 0 16 hm5C_associated_SNPs_8144 0 0 0 2 36163658 36163679 mRNA hsa-miR-133a GLIPR2 miRanda miRanda
831 chr9 36163671 36163671 1 + G T rs74499081 36163676 + 36163656 36163696 41 AAGGTCCATGTGGGAGGGACCAACCCAGATGCCCTGCTGAG AAGGTCCATGTGGGATGGACCAACCCAGATGCCCTGCTGAG < 41bp 1 0.26830822608398 1 0.191014498472214 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLIPR2 ENSG00000122694 UTR3 Human protein_coding chr9:36163676 chr9:36163671 . . 0 16 hm5C_associated_SNPs_8144 0 0 0 2 36163658 36163679 mRNA hsa-miR-133b GLIPR2 miRanda miRanda
832 chr9 38398559 38398559 1 + G A rs192713382 38398553 + 38398533 38398573 41 AACTCCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAA AACTCCTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAA < 41bp 1 0.275897718078101 1 0.0902552306652069 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398553 chr9:38398559 . . 0 27 hm5C_associated_SNPs_8166 0 0 0 1 38398549 38398570 mRNA hsa-miR-485-5p ALDH1B1 miRanda miRanda
833 chr9 38398559 38398559 1 + G A rs192713382 38398554 + 38398534 38398574 41 ACTCCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAA ACTCCTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAAA < 41bp 1 0.738717883564613 1 0.17341360449791 experiment 0.522564232870773 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398554 chr9:38398559 . . 0 26 hm5C_associated_SNPs_8167 0 0 0 1 38398549 38398570 mRNA hsa-miR-485-5p ALDH1B1 miRanda miRanda
834 chr9 38398559 38398559 1 + G A rs192713382 38398556 + 38398536 38398576 41 TCCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGT TCCTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGT < 41bp 1 0.24312776442979 1 0.051736444234848 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398556 chr9:38398559 . . 0 24 hm5C_associated_SNPs_8168 0 0 0 1 38398549 38398570 mRNA hsa-miR-485-5p ALDH1B1 miRanda miRanda
835 chr9 38398559 38398559 1 + G A rs192713382 38398557 + 38398537 38398577 41 CCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTG CCTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTG < 41bp 1 0.294404306994217 1 0.23681166768074 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398557 chr9:38398559 . . 0 23 hm5C_associated_SNPs_8169 0 0 0 1 38398549 38398570 mRNA hsa-miR-485-5p ALDH1B1 miRanda miRanda
836 chr9 38398559 38398559 1 + G A rs192713382 38398558 + 38398538 38398578 41 CTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGC CTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGC < 41bp 1 0.476428071138503 1 0.0556942820549011 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398558 chr9:38398559 . . 0 22 hm5C_associated_SNPs_8170 0 0 0 1 38398549 38398570 mRNA hsa-miR-485-5p ALDH1B1 miRanda miRanda
837 chr9 38398559 38398559 1 + G A rs192713382 38398560 + 38398540 38398580 41 GACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTG GACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTG < 41bp 1 0.422197460230935 1 0.0637930035591125 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398560 chr9:38398559 . . 0 20 hm5C_associated_SNPs_8171 0 0 0 1 38398549 38398570 mRNA hsa-miR-485-5p ALDH1B1 miRanda miRanda
838 chr9 38398559 38398559 1 + G A rs192713382 38398561 + 38398541 38398581 41 ACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGG ACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGG < 41bp 1 0.544492365570388 1 0.149815648794174 experiment 0.911015268859225 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398561 chr9:38398559 . . 0 19 hm5C_associated_SNPs_8172 0 0 0 1 38398549 38398570 mRNA hsa-miR-485-5p ALDH1B1 miRanda miRanda
839 chr9 38398559 38398559 1 + G A rs192713382 38398563 + 38398543 38398583 41 CTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGA CTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGA < 41bp 1 0.676475586293688 1 0.339799880981445 experiment 0.647048827412624 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398563 chr9:38398559 . . 0 17 hm5C_associated_SNPs_8173 0 0 0 1 38398549 38398570 mRNA hsa-miR-485-5p ALDH1B1 miRanda miRanda
840 chr9 38398559 38398559 1 + G A rs192713382 38398566 + 38398546 38398586 41 AGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTA AGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTA < 41bp 1 0.148441808015687 1 0.074014276266098 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398566 chr9:38398559 . . 0 14 hm5C_associated_SNPs_8174 0 0 0 1 38398549 38398570 mRNA hsa-miR-485-5p ALDH1B1 miRanda miRanda
841 chr9 38398559 38398559 1 + G A rs192713382 38398567 + 38398547 38398587 41 GGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTAC GGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTAC < 41bp 1 0.444769167533972 1 0.101177215576172 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398567 chr9:38398559 . . 0 13 hm5C_associated_SNPs_8175 0 0 0 1 38398549 38398570 mRNA hsa-miR-485-5p ALDH1B1 miRanda miRanda
842 chr9 38398559 38398559 1 + G A rs192713382 38398569 + 38398549 38398589 41 TGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAG TGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAG < 41bp 1 0.413914133112962 1 0.0522187650203705 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398569 chr9:38398559 . . 0 11 hm5C_associated_SNPs_8176 0 0 0 1 38398549 38398570 mRNA hsa-miR-485-5p ALDH1B1 miRanda miRanda
843 chr9 38398559 38398559 1 + G A rs192713382 38398570 + 38398550 38398590 41 GATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGG GATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.472540382616804 1 0.233792811632156 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398570 chr9:38398559 . . 0 10 hm5C_associated_SNPs_8177 0 0 0 1 38398549 38398570 mRNA hsa-miR-485-5p ALDH1B1 miRanda miRanda
844 chr9 38398559 38398559 1 + G A rs192713382 38398571 + 38398551 38398591 41 ATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGT ATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGT < 41bp 1 0.52389590802857 1 0.283527344465256 experiment 0.952208183942859 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398571 chr9:38398559 . . 0 9 hm5C_associated_SNPs_8178 0 0 0 1 38398549 38398570 mRNA hsa-miR-485-5p ALDH1B1 miRanda miRanda
845 chr9 78506249 78506249 1 + A G rs554390740 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAGCCGTAT < 41bp 1 0.0593545000381177 1 0.0332492589950562 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506249 nonsynonymous SNV 0.901 0 35 hm5C_associated_SNPs_8192 0 0 0 1 78506249 78506269 mRNA hsa-miR-431 PCSK5 miRanda miRanda
846 chr9 91973860 91973860 1 + A T rs147264264 91973841 + 91973821 91973861 41 TGACAATGTAATTTGTGTAACTGTTGAATCTGGAAATTGAT TGACAATGTAATTTGTGTAACTGTTGAATCTGGAAATTGTT < 41bp 1 0.168115190122361 1 0.0533234179019928 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SECISBP2 ENSG00000187742 UTR3 Human protein_coding chr9:91973841 chr9:91973860 . . 0 40 hm5C_associated_SNPs_8218 0 0 1 2 91973848 91973870 mRNA hsa-miR-155 SECISBP2 miRanda miRanda
847 chr9 91973860 91973860 1 + A T rs147264264 91973841 + 91973821 91973861 41 TGACAATGTAATTTGTGTAACTGTTGAATCTGGAAATTGAT TGACAATGTAATTTGTGTAACTGTTGAATCTGGAAATTGTT < 41bp 1 0.168115190122361 1 0.0533234179019928 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SECISBP2 ENSG00000187742 UTR3 Human protein_coding chr9:91973841 chr9:91973860 . . 0 40 hm5C_associated_SNPs_8218 0 0 1 2 91973859 91973880 mRNA hsa-miR-455-5p SECISBP2 miRanda miRanda
848 chr9 100079355 100079355 1 + C T rs970857 100079373 + 100079353 100079393 41 AACTATGCCCTGCTGGGCAACCGGAAGGCTCTCGCCCAGCT AATTATGCCCTGCTGGGCAACCGGAAGGCTCTCGCCCAGCT < 41bp 1 0.711418142271756 1 0.598756432533264 experiment 0.577163715456488 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100079373 chr9:100079355 synonymous SNV . 0 3 hm5C_associated_SNPs_8225 0 0 1 2 100079347 100079366 mRNA hsa-miR-103 KIAA1529 miRanda miRanda
849 chr9 100079355 100079355 1 + C T rs970857 100079373 + 100079353 100079393 41 AACTATGCCCTGCTGGGCAACCGGAAGGCTCTCGCCCAGCT AATTATGCCCTGCTGGGCAACCGGAAGGCTCTCGCCCAGCT < 41bp 1 0.711418142271756 1 0.598756432533264 experiment 0.577163715456488 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100079373 chr9:100079355 synonymous SNV . 0 3 hm5C_associated_SNPs_8225 0 0 1 2 100079347 100079366 mRNA hsa-miR-107 KIAA1529 miRanda miRanda
850 chr9 108536388 108536388 1 + A C rs73522022 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCCAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.252209551798811 1 0.175128102302551 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536388 . . 0 3 hm5C_associated_SNPs_8246 0 0 1 2 108536371 108536392 mRNA hsa-miR-129-5p TMEM38B miRanda miRanda
851 chr9 108536388 108536388 1 + A C rs73522022 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCCAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.252209551798811 1 0.175128102302551 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536388 . . 0 3 hm5C_associated_SNPs_8246 0 0 1 2 108536375 108536395 mRNA hsa-miR-590-3p TMEM38B miRanda miRanda
852 chr9 108536392 108536392 1 + A T rs184855300 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.177568355081213 1 0.105875313282013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536392 . . 0 7 hm5C_associated_SNPs_8247 0 0 1 14 108536391 108536413 mRNA hsa-let-7a TMEM38B miRanda miRanda
853 chr9 108536392 108536392 1 + A T rs184855300 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.177568355081213 1 0.105875313282013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536392 . . 0 7 hm5C_associated_SNPs_8247 0 0 1 14 108536391 108536413 mRNA hsa-let-7b TMEM38B miRanda miRanda
854 chr9 108536392 108536392 1 + A T rs184855300 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.177568355081213 1 0.105875313282013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536392 . . 0 7 hm5C_associated_SNPs_8247 0 0 1 14 108536391 108536413 mRNA hsa-let-7c TMEM38B miRanda miRanda
855 chr9 108536392 108536392 1 + A T rs184855300 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.177568355081213 1 0.105875313282013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536392 . . 0 7 hm5C_associated_SNPs_8247 0 0 1 14 108536391 108536413 mRNA hsa-let-7d TMEM38B miRanda miRanda
856 chr9 108536392 108536392 1 + A T rs184855300 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.177568355081213 1 0.105875313282013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536392 . . 0 7 hm5C_associated_SNPs_8247 0 0 1 14 108536391 108536413 mRNA hsa-let-7e TMEM38B miRanda miRanda
857 chr9 108536392 108536392 1 + A T rs184855300 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.177568355081213 1 0.105875313282013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536392 . . 0 7 hm5C_associated_SNPs_8247 0 0 1 14 108536391 108536413 mRNA hsa-let-7f TMEM38B miRanda miRanda
858 chr9 108536392 108536392 1 + A T rs184855300 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.177568355081213 1 0.105875313282013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536392 . . 0 7 hm5C_associated_SNPs_8247 0 0 1 14 108536391 108536413 mRNA hsa-miR-98 TMEM38B miRanda miRanda
859 chr9 108536392 108536392 1 + A T rs184855300 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.177568355081213 1 0.105875313282013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536392 . . 0 7 hm5C_associated_SNPs_8247 0 0 1 14 108536391 108536412 mRNA hsa-miR-196a TMEM38B miRanda miRanda
860 chr9 108536392 108536392 1 + A T rs184855300 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.177568355081213 1 0.105875313282013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536392 . . 0 7 hm5C_associated_SNPs_8247 0 0 1 14 108536371 108536392 mRNA hsa-miR-129-5p TMEM38B miRanda miRanda
861 chr9 108536392 108536392 1 + A T rs184855300 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.177568355081213 1 0.105875313282013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536392 . . 0 7 hm5C_associated_SNPs_8247 0 0 1 14 108536391 108536413 mRNA hsa-let-7g TMEM38B miRanda miRanda
862 chr9 108536392 108536392 1 + A T rs184855300 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.177568355081213 1 0.105875313282013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536392 . . 0 7 hm5C_associated_SNPs_8247 0 0 1 14 108536391 108536413 mRNA hsa-let-7i TMEM38B miRanda miRanda
863 chr9 108536392 108536392 1 + A T rs184855300 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.177568355081213 1 0.105875313282013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536392 . . 0 7 hm5C_associated_SNPs_8247 0 0 1 14 108536391 108536411 mRNA hsa-miR-379 TMEM38B miRanda miRanda
864 chr9 108536392 108536392 1 + A T rs184855300 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.177568355081213 1 0.105875313282013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536392 . . 0 7 hm5C_associated_SNPs_8247 0 0 1 14 108536391 108536412 mRNA hsa-miR-196b TMEM38B miRanda miRanda
865 chr9 108536392 108536392 1 + A T rs184855300 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.177568355081213 1 0.105875313282013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536392 . . 0 7 hm5C_associated_SNPs_8247 0 0 1 14 108536375 108536395 mRNA hsa-miR-590-3p TMEM38B miRanda miRanda
866 chr9 108536392 108536392 1 + A T rs184855300 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.152427217203286 1 0.0514187514781952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536392 . . 0 3 hm5C_associated_SNPs_8248 0 0 1 14 108536391 108536413 mRNA hsa-let-7a TMEM38B miRanda miRanda
867 chr9 108536392 108536392 1 + A T rs184855300 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.152427217203286 1 0.0514187514781952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536392 . . 0 3 hm5C_associated_SNPs_8248 0 0 1 14 108536391 108536413 mRNA hsa-let-7b TMEM38B miRanda miRanda
868 chr9 108536392 108536392 1 + A T rs184855300 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.152427217203286 1 0.0514187514781952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536392 . . 0 3 hm5C_associated_SNPs_8248 0 0 1 14 108536391 108536413 mRNA hsa-let-7c TMEM38B miRanda miRanda
869 chr9 108536392 108536392 1 + A T rs184855300 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.152427217203286 1 0.0514187514781952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536392 . . 0 3 hm5C_associated_SNPs_8248 0 0 1 14 108536391 108536413 mRNA hsa-let-7d TMEM38B miRanda miRanda
870 chr9 108536392 108536392 1 + A T rs184855300 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.152427217203286 1 0.0514187514781952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536392 . . 0 3 hm5C_associated_SNPs_8248 0 0 1 14 108536391 108536413 mRNA hsa-let-7e TMEM38B miRanda miRanda
871 chr9 108536392 108536392 1 + A T rs184855300 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.152427217203286 1 0.0514187514781952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536392 . . 0 3 hm5C_associated_SNPs_8248 0 0 1 14 108536391 108536413 mRNA hsa-let-7f TMEM38B miRanda miRanda
872 chr9 108536392 108536392 1 + A T rs184855300 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.152427217203286 1 0.0514187514781952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536392 . . 0 3 hm5C_associated_SNPs_8248 0 0 1 14 108536391 108536413 mRNA hsa-miR-98 TMEM38B miRanda miRanda
873 chr9 108536392 108536392 1 + A T rs184855300 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.152427217203286 1 0.0514187514781952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536392 . . 0 3 hm5C_associated_SNPs_8248 0 0 1 14 108536391 108536412 mRNA hsa-miR-196a TMEM38B miRanda miRanda
874 chr9 108536392 108536392 1 + A T rs184855300 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.152427217203286 1 0.0514187514781952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536392 . . 0 3 hm5C_associated_SNPs_8248 0 0 1 14 108536371 108536392 mRNA hsa-miR-129-5p TMEM38B miRanda miRanda
875 chr9 108536392 108536392 1 + A T rs184855300 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.152427217203286 1 0.0514187514781952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536392 . . 0 3 hm5C_associated_SNPs_8248 0 0 1 14 108536391 108536413 mRNA hsa-let-7g TMEM38B miRanda miRanda
876 chr9 108536392 108536392 1 + A T rs184855300 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.152427217203286 1 0.0514187514781952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536392 . . 0 3 hm5C_associated_SNPs_8248 0 0 1 14 108536391 108536413 mRNA hsa-let-7i TMEM38B miRanda miRanda
877 chr9 108536392 108536392 1 + A T rs184855300 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.152427217203286 1 0.0514187514781952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536392 . . 0 3 hm5C_associated_SNPs_8248 0 0 1 14 108536391 108536411 mRNA hsa-miR-379 TMEM38B miRanda miRanda
878 chr9 108536392 108536392 1 + A T rs184855300 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.152427217203286 1 0.0514187514781952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536392 . . 0 3 hm5C_associated_SNPs_8248 0 0 1 14 108536391 108536412 mRNA hsa-miR-196b TMEM38B miRanda miRanda
879 chr9 108536392 108536392 1 + A T rs184855300 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.152427217203286 1 0.0514187514781952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536392 . . 0 3 hm5C_associated_SNPs_8248 0 0 1 14 108536375 108536395 mRNA hsa-miR-590-3p TMEM38B miRanda miRanda
880 chr9 108536396 108536396 1 + T A rs141597117 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTATTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.259037105655647 1 0.10272553563118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536396 . . 0 11 hm5C_associated_SNPs_8249 0 0 1 13 108536391 108536413 mRNA hsa-let-7a TMEM38B miRanda miRanda
881 chr9 108536396 108536396 1 + T A rs141597117 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTATTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.259037105655647 1 0.10272553563118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536396 . . 0 11 hm5C_associated_SNPs_8249 0 0 1 13 108536391 108536413 mRNA hsa-let-7b TMEM38B miRanda miRanda
882 chr9 108536396 108536396 1 + T A rs141597117 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTATTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.259037105655647 1 0.10272553563118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536396 . . 0 11 hm5C_associated_SNPs_8249 0 0 1 13 108536391 108536413 mRNA hsa-let-7c TMEM38B miRanda miRanda
883 chr9 108536396 108536396 1 + T A rs141597117 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTATTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.259037105655647 1 0.10272553563118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536396 . . 0 11 hm5C_associated_SNPs_8249 0 0 1 13 108536391 108536413 mRNA hsa-let-7d TMEM38B miRanda miRanda
884 chr9 108536396 108536396 1 + T A rs141597117 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTATTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.259037105655647 1 0.10272553563118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536396 . . 0 11 hm5C_associated_SNPs_8249 0 0 1 13 108536391 108536413 mRNA hsa-let-7e TMEM38B miRanda miRanda
885 chr9 108536396 108536396 1 + T A rs141597117 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTATTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.259037105655647 1 0.10272553563118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536396 . . 0 11 hm5C_associated_SNPs_8249 0 0 1 13 108536391 108536413 mRNA hsa-let-7f TMEM38B miRanda miRanda
886 chr9 108536396 108536396 1 + T A rs141597117 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTATTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.259037105655647 1 0.10272553563118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536396 . . 0 11 hm5C_associated_SNPs_8249 0 0 1 13 108536391 108536413 mRNA hsa-miR-98 TMEM38B miRanda miRanda
887 chr9 108536396 108536396 1 + T A rs141597117 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTATTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.259037105655647 1 0.10272553563118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536396 . . 0 11 hm5C_associated_SNPs_8249 0 0 1 13 108536391 108536412 mRNA hsa-miR-196a TMEM38B miRanda miRanda
888 chr9 108536396 108536396 1 + T A rs141597117 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTATTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.259037105655647 1 0.10272553563118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536396 . . 0 11 hm5C_associated_SNPs_8249 0 0 1 13 108536391 108536413 mRNA hsa-let-7g TMEM38B miRanda miRanda
889 chr9 108536396 108536396 1 + T A rs141597117 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTATTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.259037105655647 1 0.10272553563118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536396 . . 0 11 hm5C_associated_SNPs_8249 0 0 1 13 108536391 108536413 mRNA hsa-let-7i TMEM38B miRanda miRanda
890 chr9 108536396 108536396 1 + T A rs141597117 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTATTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.259037105655647 1 0.10272553563118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536396 . . 0 11 hm5C_associated_SNPs_8249 0 0 1 13 108536396 108536417 mRNA hsa-miR-194 TMEM38B miRanda miRanda
891 chr9 108536396 108536396 1 + T A rs141597117 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTATTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.259037105655647 1 0.10272553563118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536396 . . 0 11 hm5C_associated_SNPs_8249 0 0 1 13 108536391 108536411 mRNA hsa-miR-379 TMEM38B miRanda miRanda
892 chr9 108536396 108536396 1 + T A rs141597117 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTATTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.259037105655647 1 0.10272553563118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536396 . . 0 11 hm5C_associated_SNPs_8249 0 0 1 13 108536391 108536412 mRNA hsa-miR-196b TMEM38B miRanda miRanda
893 chr9 108536396 108536396 1 + T A rs141597117 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTATTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.17056811451831 1 0.0531870126724243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536396 . . 0 7 hm5C_associated_SNPs_8250 0 0 1 13 108536391 108536413 mRNA hsa-let-7a TMEM38B miRanda miRanda
894 chr9 108536396 108536396 1 + T A rs141597117 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTATTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.17056811451831 1 0.0531870126724243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536396 . . 0 7 hm5C_associated_SNPs_8250 0 0 1 13 108536391 108536413 mRNA hsa-let-7b TMEM38B miRanda miRanda
895 chr9 108536396 108536396 1 + T A rs141597117 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTATTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.17056811451831 1 0.0531870126724243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536396 . . 0 7 hm5C_associated_SNPs_8250 0 0 1 13 108536391 108536413 mRNA hsa-let-7c TMEM38B miRanda miRanda
896 chr9 108536396 108536396 1 + T A rs141597117 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTATTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.17056811451831 1 0.0531870126724243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536396 . . 0 7 hm5C_associated_SNPs_8250 0 0 1 13 108536391 108536413 mRNA hsa-let-7d TMEM38B miRanda miRanda
897 chr9 108536396 108536396 1 + T A rs141597117 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTATTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.17056811451831 1 0.0531870126724243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536396 . . 0 7 hm5C_associated_SNPs_8250 0 0 1 13 108536391 108536413 mRNA hsa-let-7e TMEM38B miRanda miRanda
898 chr9 108536396 108536396 1 + T A rs141597117 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTATTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.17056811451831 1 0.0531870126724243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536396 . . 0 7 hm5C_associated_SNPs_8250 0 0 1 13 108536391 108536413 mRNA hsa-let-7f TMEM38B miRanda miRanda
899 chr9 108536396 108536396 1 + T A rs141597117 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTATTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.17056811451831 1 0.0531870126724243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536396 . . 0 7 hm5C_associated_SNPs_8250 0 0 1 13 108536391 108536413 mRNA hsa-miR-98 TMEM38B miRanda miRanda
900 chr9 108536396 108536396 1 + T A rs141597117 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTATTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.17056811451831 1 0.0531870126724243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536396 . . 0 7 hm5C_associated_SNPs_8250 0 0 1 13 108536391 108536412 mRNA hsa-miR-196a TMEM38B miRanda miRanda
901 chr9 108536396 108536396 1 + T A rs141597117 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTATTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.17056811451831 1 0.0531870126724243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536396 . . 0 7 hm5C_associated_SNPs_8250 0 0 1 13 108536391 108536413 mRNA hsa-let-7g TMEM38B miRanda miRanda
902 chr9 108536396 108536396 1 + T A rs141597117 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTATTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.17056811451831 1 0.0531870126724243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536396 . . 0 7 hm5C_associated_SNPs_8250 0 0 1 13 108536391 108536413 mRNA hsa-let-7i TMEM38B miRanda miRanda
903 chr9 108536396 108536396 1 + T A rs141597117 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTATTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.17056811451831 1 0.0531870126724243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536396 . . 0 7 hm5C_associated_SNPs_8250 0 0 1 13 108536396 108536417 mRNA hsa-miR-194 TMEM38B miRanda miRanda
904 chr9 108536396 108536396 1 + T A rs141597117 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTATTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.17056811451831 1 0.0531870126724243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536396 . . 0 7 hm5C_associated_SNPs_8250 0 0 1 13 108536391 108536411 mRNA hsa-miR-379 TMEM38B miRanda miRanda
905 chr9 108536396 108536396 1 + T A rs141597117 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTATTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.17056811451831 1 0.0531870126724243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536396 . . 0 7 hm5C_associated_SNPs_8250 0 0 1 13 108536391 108536412 mRNA hsa-miR-196b TMEM38B miRanda miRanda
906 chr9 108536420 108536420 1 + G T rs146363879 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAA < 41bp 1 0.249328689360875 1 0.299383401870728 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536420 . . 0 35 hm5C_associated_SNPs_8251 0 0 1 8 108536406 108536425 mRNA hsa-miR-29a TMEM38B miRanda miRanda
907 chr9 108536420 108536420 1 + G T rs146363879 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAA < 41bp 1 0.249328689360875 1 0.299383401870728 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536420 . . 0 35 hm5C_associated_SNPs_8251 0 0 1 8 108536407 108536428 mRNA hsa-miR-32 TMEM38B miRanda miRanda
908 chr9 108536420 108536420 1 + G T rs146363879 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAA < 41bp 1 0.249328689360875 1 0.299383401870728 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536420 . . 0 35 hm5C_associated_SNPs_8251 0 0 1 8 108536403 108536425 mRNA hsa-miR-29b TMEM38B miRanda miRanda
909 chr9 108536420 108536420 1 + G T rs146363879 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAA < 41bp 1 0.249328689360875 1 0.299383401870728 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536420 . . 0 35 hm5C_associated_SNPs_8251 0 0 1 8 108536406 108536425 mRNA hsa-miR-29c TMEM38B miRanda miRanda
910 chr9 108536420 108536420 1 + G T rs146363879 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAA < 41bp 1 0.249328689360875 1 0.299383401870728 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536420 . . 0 35 hm5C_associated_SNPs_8251 0 0 1 8 108536406 108536428 mRNA hsa-miR-363 TMEM38B miRanda miRanda
911 chr9 108536420 108536420 1 + G T rs146363879 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAA < 41bp 1 0.249328689360875 1 0.299383401870728 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536420 . . 0 35 hm5C_associated_SNPs_8251 0 0 1 8 108536418 108536438 mRNA hsa-miR-376c TMEM38B miRanda miRanda
912 chr9 108536420 108536420 1 + G T rs146363879 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAA < 41bp 1 0.249328689360875 1 0.299383401870728 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536420 . . 0 35 hm5C_associated_SNPs_8251 0 0 1 8 108536418 108536438 mRNA hsa-miR-376a TMEM38B miRanda miRanda
913 chr9 108536420 108536420 1 + G T rs146363879 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAA < 41bp 1 0.249328689360875 1 0.299383401870728 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536420 . . 0 35 hm5C_associated_SNPs_8251 0 0 1 8 108536417 108536438 mRNA hsa-miR-376b TMEM38B miRanda miRanda
914 chr9 108536420 108536420 1 + G T rs146363879 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAATTTT < 41bp 1 0.108449496785357 1 0.0773288607597351 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536420 . . 0 31 hm5C_associated_SNPs_8252 0 0 1 8 108536406 108536425 mRNA hsa-miR-29a TMEM38B miRanda miRanda
915 chr9 108536420 108536420 1 + G T rs146363879 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAATTTT < 41bp 1 0.108449496785357 1 0.0773288607597351 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536420 . . 0 31 hm5C_associated_SNPs_8252 0 0 1 8 108536407 108536428 mRNA hsa-miR-32 TMEM38B miRanda miRanda
916 chr9 108536420 108536420 1 + G T rs146363879 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAATTTT < 41bp 1 0.108449496785357 1 0.0773288607597351 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536420 . . 0 31 hm5C_associated_SNPs_8252 0 0 1 8 108536403 108536425 mRNA hsa-miR-29b TMEM38B miRanda miRanda
917 chr9 108536420 108536420 1 + G T rs146363879 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAATTTT < 41bp 1 0.108449496785357 1 0.0773288607597351 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536420 . . 0 31 hm5C_associated_SNPs_8252 0 0 1 8 108536406 108536425 mRNA hsa-miR-29c TMEM38B miRanda miRanda
918 chr9 108536420 108536420 1 + G T rs146363879 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAATTTT < 41bp 1 0.108449496785357 1 0.0773288607597351 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536420 . . 0 31 hm5C_associated_SNPs_8252 0 0 1 8 108536406 108536428 mRNA hsa-miR-363 TMEM38B miRanda miRanda
919 chr9 108536420 108536420 1 + G T rs146363879 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAATTTT < 41bp 1 0.108449496785357 1 0.0773288607597351 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536420 . . 0 31 hm5C_associated_SNPs_8252 0 0 1 8 108536418 108536438 mRNA hsa-miR-376c TMEM38B miRanda miRanda
920 chr9 108536420 108536420 1 + G T rs146363879 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAATTTT < 41bp 1 0.108449496785357 1 0.0773288607597351 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536420 . . 0 31 hm5C_associated_SNPs_8252 0 0 1 8 108536418 108536438 mRNA hsa-miR-376a TMEM38B miRanda miRanda
921 chr9 108536420 108536420 1 + G T rs146363879 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAATTTT < 41bp 1 0.108449496785357 1 0.0773288607597351 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536420 . . 0 31 hm5C_associated_SNPs_8252 0 0 1 8 108536417 108536438 mRNA hsa-miR-376b TMEM38B miRanda miRanda
922 chr9 131361670 131361670 1 + T C rs7868827 131361660 + 131361640 131361680 41 CCAACCTCAGGTGATCTGCCCACCTCAGCTTCCCAGAGTGC CCAACCTCAGGTGATCTGCCCACCTCAGCTCCCCAGAGTGC < 41bp 1 0.0537632720963286 1 0.148491442203522 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MIR1268A ENSG00000197694 intronic Human protein_coding chr9:131361660 chr9:131361670 . . 0 31 hm5C_associated_SNPs_8315 0 0 0 2 131361655 131361678 mRNA hsa-miR-330-5p SPTAN1 miRanda miRanda
923 chr9 131361670 131361670 1 + T C rs7868827 131361660 + 131361640 131361680 41 CCAACCTCAGGTGATCTGCCCACCTCAGCTTCCCAGAGTGC CCAACCTCAGGTGATCTGCCCACCTCAGCTCCCCAGAGTGC < 41bp 1 0.0537632720963286 1 0.148491442203522 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MIR1268A ENSG00000197694 intronic Human protein_coding chr9:131361660 chr9:131361670 . . 0 31 hm5C_associated_SNPs_8315 0 0 0 2 131361659 131361678 mRNA hsa-miR-326 SPTAN1 miRanda miRanda
924 chr9 131909837 131909837 1 + G A rs549628194 131909836 + 131909816 131909856 41 CCCCATCCCCTCCCTCTGTTCGTCCCGTTTGATGAGAGGCT CCCCATCCCCTCCCTCTGTTCATCCCGTTTGATGAGAGGCT < 41bp 1 0.0783509135676748 1 0.0759182870388031 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPA ENSG00000119383 UTR3 Human protein_coding chr9:131909836 chr9:131909837 . . 0 22 hm5C_associated_SNPs_8331 0 0 1 1 131909833 131909855 mRNA hsa-miR-205 PPP2R4 miRanda miRanda
925 chr9 136216971 136216971 1 + T C rs148805269 136216975 + 136216955 136216995 41 GTGATGTAAAATTTCTTGGCCTGAAATTACTGTGAAGAGTA GTGATGTAAAATTTCTCGGCCTGAAATTACTGTGAAGAGTA < 41bp 1 0.358020426960799 1 0.0752498507499695 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36B ENSG00000200831 ncRNA_exonic Human snoRNA chr9:136216975 chr9:136216971 . . 0 17 hm5C_associated_SNPs_8424 0 0 1 5 136216967 136216990 mRNA hsa-miR-26a SNORD36B miRanda miRanda
926 chr9 136216971 136216971 1 + T C rs148805269 136216975 + 136216955 136216995 41 GTGATGTAAAATTTCTTGGCCTGAAATTACTGTGAAGAGTA GTGATGTAAAATTTCTCGGCCTGAAATTACTGTGAAGAGTA < 41bp 1 0.358020426960799 1 0.0752498507499695 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36B ENSG00000200831 ncRNA_exonic Human snoRNA chr9:136216975 chr9:136216971 . . 0 17 hm5C_associated_SNPs_8424 0 0 1 5 136216968 136216990 mRNA hsa-miR-26b SNORD36B miRanda miRanda
927 chr9 136216971 136216971 1 + T C rs148805269 136216975 + 136216955 136216995 41 GTGATGTAAAATTTCTTGGCCTGAAATTACTGTGAAGAGTA GTGATGTAAAATTTCTCGGCCTGAAATTACTGTGAAGAGTA < 41bp 1 0.358020426960799 1 0.0752498507499695 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36B ENSG00000200831 ncRNA_exonic Human snoRNA chr9:136216975 chr9:136216971 . . 0 17 hm5C_associated_SNPs_8424 0 0 1 5 136216969 136216990 mRNA hsa-miR-27a SNORD36B miRanda miRanda
928 chr9 136216971 136216971 1 + T C rs148805269 136216975 + 136216955 136216995 41 GTGATGTAAAATTTCTTGGCCTGAAATTACTGTGAAGAGTA GTGATGTAAAATTTCTCGGCCTGAAATTACTGTGAAGAGTA < 41bp 1 0.358020426960799 1 0.0752498507499695 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36B ENSG00000200831 ncRNA_exonic Human snoRNA chr9:136216975 chr9:136216971 . . 0 17 hm5C_associated_SNPs_8424 0 0 1 5 136216969 136216990 mRNA hsa-miR-27b SNORD36B miRanda miRanda
929 chr9 136216971 136216971 1 + T C rs148805269 136216975 + 136216955 136216995 41 GTGATGTAAAATTTCTTGGCCTGAAATTACTGTGAAGAGTA GTGATGTAAAATTTCTCGGCCTGAAATTACTGTGAAGAGTA < 41bp 1 0.358020426960799 1 0.0752498507499695 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36B ENSG00000200831 ncRNA_exonic Human snoRNA chr9:136216975 chr9:136216971 . . 0 17 hm5C_associated_SNPs_8424 0 0 1 5 136216967 136216989 mRNA hsa-miR-128 SNORD36B miRanda miRanda
930 chr9 136216971 136216971 1 + T C rs148805269 136216984 + 136216964 136217004 41 AATTTCTTGGCCTGAAATTACTGTGAAGAGTAAAACCGAGC AATTTCTCGGCCTGAAATTACTGTGAAGAGTAAAACCGAGC < 41bp 1 0.488002567023601 1 0.206247538328171 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36B ENSG00000200831 ncRNA_exonic Human snoRNA chr9:136216984 chr9:136216971 . . 0 8 hm5C_associated_SNPs_8425 0 0 1 5 136216967 136216990 mRNA hsa-miR-26a SNORD36B miRanda miRanda
931 chr9 136216971 136216971 1 + T C rs148805269 136216984 + 136216964 136217004 41 AATTTCTTGGCCTGAAATTACTGTGAAGAGTAAAACCGAGC AATTTCTCGGCCTGAAATTACTGTGAAGAGTAAAACCGAGC < 41bp 1 0.488002567023601 1 0.206247538328171 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36B ENSG00000200831 ncRNA_exonic Human snoRNA chr9:136216984 chr9:136216971 . . 0 8 hm5C_associated_SNPs_8425 0 0 1 5 136216968 136216990 mRNA hsa-miR-26b SNORD36B miRanda miRanda
932 chr9 136216971 136216971 1 + T C rs148805269 136216984 + 136216964 136217004 41 AATTTCTTGGCCTGAAATTACTGTGAAGAGTAAAACCGAGC AATTTCTCGGCCTGAAATTACTGTGAAGAGTAAAACCGAGC < 41bp 1 0.488002567023601 1 0.206247538328171 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36B ENSG00000200831 ncRNA_exonic Human snoRNA chr9:136216984 chr9:136216971 . . 0 8 hm5C_associated_SNPs_8425 0 0 1 5 136216969 136216990 mRNA hsa-miR-27a SNORD36B miRanda miRanda
933 chr9 136216971 136216971 1 + T C rs148805269 136216984 + 136216964 136217004 41 AATTTCTTGGCCTGAAATTACTGTGAAGAGTAAAACCGAGC AATTTCTCGGCCTGAAATTACTGTGAAGAGTAAAACCGAGC < 41bp 1 0.488002567023601 1 0.206247538328171 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36B ENSG00000200831 ncRNA_exonic Human snoRNA chr9:136216984 chr9:136216971 . . 0 8 hm5C_associated_SNPs_8425 0 0 1 5 136216969 136216990 mRNA hsa-miR-27b SNORD36B miRanda miRanda
934 chr9 136216971 136216971 1 + T C rs148805269 136216984 + 136216964 136217004 41 AATTTCTTGGCCTGAAATTACTGTGAAGAGTAAAACCGAGC AATTTCTCGGCCTGAAATTACTGTGAAGAGTAAAACCGAGC < 41bp 1 0.488002567023601 1 0.206247538328171 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36B ENSG00000200831 ncRNA_exonic Human snoRNA chr9:136216984 chr9:136216971 . . 0 8 hm5C_associated_SNPs_8425 0 0 1 5 136216967 136216989 mRNA hsa-miR-128 SNORD36B miRanda miRanda
935 chr9 136217376 136217376 1 + T A rs79897455 136217358 + 136217338 136217378 41 TTCAACCTTGAAGTGCGAATCCATGAGCTTTTTAACCCTGA TTCAACCTTGAAGTGCGAATCCATGAGCTTTTTAACCCAGA < 41bp 1 0.0890256776323992 1 0.411190867424011 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36A ENSG00000199744 ncRNA_exonic Human snoRNA chr9:136217358 chr9:136217376 . . 0 39 hm5C_associated_SNPs_8431 0 0 1 1 136217359 136217380 mRNA hsa-miR-24 SNORD36A miRanda miRanda
936 chr9 136217376 136217376 1 + T A rs79897455 136217365 + 136217345 136217385 41 TTGAAGTGCGAATCCATGAGCTTTTTAACCCTGAGCAATTG TTGAAGTGCGAATCCATGAGCTTTTTAACCCAGAGCAATTG < 41bp 1 0.0599078348523367 1 0.0569513738155365 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36A ENSG00000199744 ncRNA_exonic Human snoRNA chr9:136217365 chr9:136217376 . . 0 32 hm5C_associated_SNPs_8432 0 0 1 1 136217359 136217380 mRNA hsa-miR-24 SNORD36A miRanda miRanda
937 chr9 136217376 136217376 1 + T A rs79897455 136217373 + 136217353 136217393 41 CGAATCCATGAGCTTTTTAACCCTGAGCAATTGTTACAAGC CGAATCCATGAGCTTTTTAACCCAGAGCAATTGTTACAAGC < 41bp 1 0.203329749441616 1 0.133297890424728 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36A ENSG00000199744 ncRNA_exonic Human snoRNA chr9:136217373 chr9:136217376 . . 0 24 hm5C_associated_SNPs_8433 0 0 1 1 136217359 136217380 mRNA hsa-miR-24 SNORD36A miRanda miRanda
938 chr9 138396251 138396251 1 + A G rs535 138396249 + 138396229 138396269 41 GACCTCAGTGGCTGGTATGGCCAAGCTGCTAGAAGATGCTG GACCTCAGTGGCTGGTATGGCCGAGCTGCTAGAAGATGCTG < 41bp 1 0.654638163519505 1 0.275636553764343 experiment 0.690723672960991 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LOC101928525 ENSG00000226706 ncRNA_intronic Human antisense chr9:138396249 chr9:138396251 . . 0 23 hm5C_associated_SNPs_8467 0 0 1 7 138396248 138396272 mRNA hsa-miR-15a MRPS2 miRanda miRanda
939 chr9 138396251 138396251 1 + A G rs535 138396249 + 138396229 138396269 41 GACCTCAGTGGCTGGTATGGCCAAGCTGCTAGAAGATGCTG GACCTCAGTGGCTGGTATGGCCGAGCTGCTAGAAGATGCTG < 41bp 1 0.654638163519505 1 0.275636553764343 experiment 0.690723672960991 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LOC101928525 ENSG00000226706 ncRNA_intronic Human antisense chr9:138396249 chr9:138396251 . . 0 23 hm5C_associated_SNPs_8467 0 0 1 7 138396247 138396272 mRNA hsa-miR-16 MRPS2 miRanda miRanda
940 chr9 138396251 138396251 1 + A G rs535 138396249 + 138396229 138396269 41 GACCTCAGTGGCTGGTATGGCCAAGCTGCTAGAAGATGCTG GACCTCAGTGGCTGGTATGGCCGAGCTGCTAGAAGATGCTG < 41bp 1 0.654638163519505 1 0.275636553764343 experiment 0.690723672960991 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LOC101928525 ENSG00000226706 ncRNA_intronic Human antisense chr9:138396249 chr9:138396251 . . 0 23 hm5C_associated_SNPs_8467 0 0 1 7 138396248 138396271 mRNA hsa-miR-103 MRPS2 miRanda miRanda
941 chr9 138396251 138396251 1 + A G rs535 138396249 + 138396229 138396269 41 GACCTCAGTGGCTGGTATGGCCAAGCTGCTAGAAGATGCTG GACCTCAGTGGCTGGTATGGCCGAGCTGCTAGAAGATGCTG < 41bp 1 0.654638163519505 1 0.275636553764343 experiment 0.690723672960991 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LOC101928525 ENSG00000226706 ncRNA_intronic Human antisense chr9:138396249 chr9:138396251 . . 0 23 hm5C_associated_SNPs_8467 0 0 1 7 138396248 138396271 mRNA hsa-miR-107 MRPS2 miRanda miRanda
942 chr9 138396251 138396251 1 + A G rs535 138396249 + 138396229 138396269 41 GACCTCAGTGGCTGGTATGGCCAAGCTGCTAGAAGATGCTG GACCTCAGTGGCTGGTATGGCCGAGCTGCTAGAAGATGCTG < 41bp 1 0.654638163519505 1 0.275636553764343 experiment 0.690723672960991 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LOC101928525 ENSG00000226706 ncRNA_intronic Human antisense chr9:138396249 chr9:138396251 . . 0 23 hm5C_associated_SNPs_8467 0 0 1 7 138396248 138396272 mRNA hsa-miR-15b MRPS2 miRanda miRanda
943 chr9 138396251 138396251 1 + A G rs535 138396249 + 138396229 138396269 41 GACCTCAGTGGCTGGTATGGCCAAGCTGCTAGAAGATGCTG GACCTCAGTGGCTGGTATGGCCGAGCTGCTAGAAGATGCTG < 41bp 1 0.654638163519505 1 0.275636553764343 experiment 0.690723672960991 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LOC101928525 ENSG00000226706 ncRNA_intronic Human antisense chr9:138396249 chr9:138396251 . . 0 23 hm5C_associated_SNPs_8467 0 0 1 7 138396248 138396272 mRNA hsa-miR-424 MRPS2 miRanda miRanda
944 chr9 138396251 138396251 1 + A G rs535 138396249 + 138396229 138396269 41 GACCTCAGTGGCTGGTATGGCCAAGCTGCTAGAAGATGCTG GACCTCAGTGGCTGGTATGGCCGAGCTGCTAGAAGATGCTG < 41bp 1 0.654638163519505 1 0.275636553764343 experiment 0.690723672960991 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LOC101928525 ENSG00000226706 ncRNA_intronic Human antisense chr9:138396249 chr9:138396251 . . 0 23 hm5C_associated_SNPs_8467 0 0 1 7 138396249 138396272 mRNA hsa-miR-497 MRPS2 miRanda miRanda
945 chr9 140002989 140002989 1 + T C rs4880091 140002991 + 140002971 140003011 41 AAACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAG AAACCTGCTCAGCCTGGACGCCTACGTGTTCAACACCGAAG < 41bp 1 0.0518480956025521 1 0.165575623512268 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002991 chr9:140002989 synonymous SNV . 0 19 hm5C_associated_SNPs_8506 2 0 1 1 140002985 140003006 mRNA hsa-miR-653 MAN1B1 miRanda miRanda
946 chr9 140002989 140002989 1 + T C rs4880091 140002992 + 140002972 140003012 41 AACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAGC AACCTGCTCAGCCTGGACGCCTACGTGTTCAACACCGAAGC < 41bp 1 0.416691878202031 1 0.113255232572556 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002992 chr9:140002989 synonymous SNV . 0 18 hm5C_associated_SNPs_8507 2 0 1 1 140002985 140003006 mRNA hsa-miR-653 MAN1B1 miRanda miRanda
947 chr9 140002995 140002995 1 + C T rs118117962 140002991 + 140002971 140003011 41 AAACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAG AAACCTGCTCAGCCTGGATGCCTATGTGTTCAACACCGAAG < 41bp 1 0.0712661994419199 1 0.168125480413437 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002991 chr9:140002995 synonymous SNV . 0 25 hm5C_associated_SNPs_8508 2 0 1 1 140002985 140003006 mRNA hsa-miR-653 MAN1B1 miRanda miRanda
948 chr9 140002995 140002995 1 + C T rs118117962 140002992 + 140002972 140003012 41 AACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAGC AACCTGCTCAGCCTGGATGCCTATGTGTTCAACACCGAAGC < 41bp 1 0.293097047430016 1 0.101776599884033 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002992 chr9:140002995 synonymous SNV . 0 24 hm5C_associated_SNPs_8509 2 0 1 1 140002985 140003006 mRNA hsa-miR-653 MAN1B1 miRanda miRanda
949 chr10 12191697 12191697 1 + T C rs141011007 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATACACCGAAAGACAGAGCTTTAT < 41bp 1 0.593816970381208 1 0.0587634444236755 experiment 0.812366059237584 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191697 synonymous SNV . 0 31 hm5C_associated_SNPs_8551 0 0 1 5 12191695 12191717 mRNA hsa-miR-136 SEC61A2 miRanda miRanda
950 chr10 12191697 12191697 1 + T C rs141011007 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATACACCGAAAGACAGAGCTTTAT < 41bp 1 0.593816970381208 1 0.0587634444236755 experiment 0.812366059237584 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191697 synonymous SNV . 0 31 hm5C_associated_SNPs_8551 0 0 1 5 12191685 12191706 mRNA hsa-miR-320a SEC61A2 miRanda miRanda
951 chr10 12191697 12191697 1 + T C rs141011007 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATACACCGAAAGACAGAGCTTTAT < 41bp 1 0.593816970381208 1 0.0587634444236755 experiment 0.812366059237584 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191697 synonymous SNV . 0 31 hm5C_associated_SNPs_8551 0 0 1 5 12191685 12191706 mRNA hsa-miR-320b SEC61A2 miRanda miRanda
952 chr10 12191697 12191697 1 + T C rs141011007 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATACACCGAAAGACAGAGCTTTAT < 41bp 1 0.593816970381208 1 0.0587634444236755 experiment 0.812366059237584 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191697 synonymous SNV . 0 31 hm5C_associated_SNPs_8551 0 0 1 5 12191687 12191706 mRNA hsa-miR-320c SEC61A2 miRanda miRanda
953 chr10 12191697 12191697 1 + T C rs141011007 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATACACCGAAAGACAGAGCTTTAT < 41bp 1 0.593816970381208 1 0.0587634444236755 experiment 0.812366059237584 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191697 synonymous SNV . 0 31 hm5C_associated_SNPs_8551 0 0 1 5 12191688 12191706 mRNA hsa-miR-320d SEC61A2 miRanda miRanda
954 chr10 17275861 17275861 1 + C T rs4903 17275853 + 17275833 17275873 41 AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAA AGCCTGACCTCACGGCTGCCCTGCGTGATGTACGTCAGCAA < 41bp 1 0.644870930969309 1 0.686524510383606 experiment 0.710258138061381 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275853 chr10:17275861 synonymous SNV . 0 29 hm5C_associated_SNPs_8573 0 0 1 1 17275853 17275876 mRNA hsa-miR-137 VIM miRanda miRanda
955 chr10 17275861 17275861 1 + C T rs4903 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCACGGCTGCCCTGCGTGATGTACGTCAGCAATAT < 41bp 1 0.490324611059656 1 0.204555660486221 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275861 synonymous SNV . 0 26 hm5C_associated_SNPs_8574 0 0 1 1 17275853 17275876 mRNA hsa-miR-137 VIM miRanda miRanda
956 chr10 35500774 35500774 1 + T C rs113826847 35500785 + 35500765 35500805 41 TAGTTGCTTTTGAAGGAATACAATATATAGCTGGCAAGAAT TAGTTGCTTCTGAAGGAATACAATATATAGCTGGCAAGAAT < 41bp 1 0.538162043173838 1 0.386038184165955 experiment 0.923675913652325 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CREM ENSG00000095794 UTR3 Human protein_coding chr10:35500785 chr10:35500774 . . 0 10 hm5C_associated_SNPs_8580 0 0 1 1 35500760 35500781 mRNA hsa-miR-205 CREM miRanda miRanda
957 chr10 62554183 62554183 1 + T A rs145740622 62554163 + 62554143 62554183 41 GTTTCTTGCCATGTTGTTAACTATACAACCTGGCTAAAGAT GTTTCTTGCCATGTTGTTAACTATACAACCTGGCTAAAGAA < 41bp 1 0.333617659610525 1 0.770842969417572 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CDK1 ENSG00000170312 UTR3 Human protein_coding chr10:62554163 chr10:62554183 . . 0 41 hm5C_associated_SNPs_8597 0 0 1 1 62554179 62554199 mRNA hsa-miR-411 CDK1 miRanda miRanda
958 chr10 70742681 70742681 1 + C T rs537152748 70742667 + 70742647 70742687 41 TTAAAAGCACATTGTGCCTCCTTTTGACCACTTGCCAAGTC TTAAAAGCACATTGTGCCTCCTTTTGACCACTTGTCAAGTC < 41bp 1 0.0775665732909362 1 0.0393932163715363 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DDX21 ENSG00000165732 UTR3 Human protein_coding chr10:70742667 chr10:70742681 . . 0 35 hm5C_associated_SNPs_8628 0 0 1 1 70742661 70742685 mRNA hsa-miR-182 DDX21 miRanda miRanda
959 chr10 75531700 75531700 1 + T C rs144190215 75531699 + 75531679 75531719 41 AGCTGGAGCGCCGTTCTCTCCTGCTGGGACACCGCTTGGGC AGCTGGAGCGCCGTTCTCTCCCGCTGGGACACCGCTTGGGC < 41bp 1 0.581017337104661 1 0.363900721073151 experiment 0.837965325790679 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC24C ENSG00000176986 UTR3 Human protein_coding chr10:75531699 chr10:75531700 . . 0 22 hm5C_associated_SNPs_8670 0 0 1 1 75531685 75531705 mRNA hsa-miR-214 SEC24C miRanda miRanda
960 chr10 79799975 79799975 1 + G A rs139289215 79799966 + 79799946 79799986 41 CCCGCCACTGATTCAGTGAGCTGGAGATTGGATCACAGGTA CCCGCCACTGATTCAGTGAGCTGGAGATTAGATCACAGGTA < 41bp 1 0.698286090241184 1 0.559856414794922 experiment 0.603427819517632 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 UTR3 Human protein_coding chr10:79799966 chr10:79799975 . . 0 30 hm5C_associated_SNPs_8687 1 0 1 1 79799962 79799975 mRNA hsa-miR-216a RPS24 miRanda miRanda
961 chr10 79799975 79799975 1 + G A rs139289215 79799981 + 79799961 79800001 41 GTGAGCTGGAGATTGGATCACAGGTATAATTCAAGCTTTTC GTGAGCTGGAGATTAGATCACAGGTATAATTCAAGCTTTTC < 41bp 1 0.481979322913641 1 0.442115902900696 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 UTR3 Human protein_coding chr10:79799981 chr10:79799975 . . 0 15 hm5C_associated_SNPs_8688 1 0 1 1 79799962 79799975 mRNA hsa-miR-216a RPS24 miRanda miRanda
962 chr10 88495037 88495037 1 + C A rs193213375 88495018 + 88494998 88495038 41 CAAAACTAGCAAAAAAAAAACAAAAAAACAAAAAAAAAACC CAAAACTAGCAAAAAAAAAACAAAAAAACAAAAAAAAAAAC < 41bp 1 0.551416004735804 1 0.802130103111267 experiment 0.897167990528392 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control LDB3 ENSG00000122367 UTR3 Human protein_coding chr10:88495018 chr10:88495037 . . 0 40 hm5C_associated_SNPs_8714 0 0 0 1 88495021 88495042 mRNA hsa-miR-140-5p LDB3 miRanda miRanda
963 chr10 88495037 88495037 1 + C A rs193213375 88495026 + 88495006 88495046 41 GCAAAAAAAAAACAAAAAAACAAAAAAAAAACCACTTAAAA GCAAAAAAAAAACAAAAAAACAAAAAAAAAAACACTTAAAA < 41bp 1 0.704506042571766 1 0.868108510971069 experiment 0.590987914856468 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control LDB3 ENSG00000122367 UTR3 Human protein_coding chr10:88495026 chr10:88495037 . . 0 32 hm5C_associated_SNPs_8715 0 0 0 1 88495021 88495042 mRNA hsa-miR-140-5p LDB3 miRanda miRanda
964 chr10 88495039 88495039 1 + A C rs565279041 88495026 + 88495006 88495046 41 GCAAAAAAAAAACAAAAAAACAAAAAAAAAACCACTTAAAA GCAAAAAAAAAACAAAAAAACAAAAAAAAAACCCCTTAAAA < 41bp 1 0.728358507117213 1 0.872740387916565 experiment 0.543282985765575 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control LDB3 ENSG00000122367 UTR3 Human protein_coding chr10:88495026 chr10:88495039 . . 0 34 hm5C_associated_SNPs_8716 0 0 0 1 88495021 88495042 mRNA hsa-miR-140-5p LDB3 miRanda miRanda
965 chr10 94757362 94757362 1 + A G rs114345865 94757363 + 94757343 94757383 41 AGTTTAACTTAGATGTCATACAGTGTGAATGTAAGTACTAT AGTTTAACTTAGATGTCATGCAGTGTGAATGTAAGTACTAT < 41bp 1 0.204907041375102 1 0.150873154401779 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94757363 chr10:94757362 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_8728 0 0 1 1 94757349 94757370 mRNA hsa-miR-141 EXOC6 miRanda miRanda
966 chr10 99330813 99330813 1 + A G rs10748705 99330812 + 99330792 99330832 41 GAGATGAGGCGGGTGGTGGACAGCTGGGCTGTCGTGGCAGG GAGATGAGGCGGGTGGTGGACGGCTGGGCTGTCGTGGCAGG < 41bp 1 0.772315982648901 1 0.757217407226562 experiment 0.455368034702198 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBTD1 ENSG00000165886 UTR3 Human protein_coding chr10:99330812 chr10:99330813 . . 0 22 hm5C_associated_SNPs_8740 0 0 0 2 99330798 99330819 mRNA hsa-miR-199a-5p UBTD1 miRanda miRanda
967 chr10 99330813 99330813 1 + A G rs10748705 99330812 + 99330792 99330832 41 GAGATGAGGCGGGTGGTGGACAGCTGGGCTGTCGTGGCAGG GAGATGAGGCGGGTGGTGGACGGCTGGGCTGTCGTGGCAGG < 41bp 1 0.772315982648901 1 0.757217407226562 experiment 0.455368034702198 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBTD1 ENSG00000165886 UTR3 Human protein_coding chr10:99330812 chr10:99330813 . . 0 22 hm5C_associated_SNPs_8740 0 0 0 2 99330798 99330819 mRNA hsa-miR-199b-5p UBTD1 miRanda miRanda
968 chr10 104235972 104235972 1 + G A rs45597333 104235971 + 104235951 104235991 41 AGTAGGTGGGATTATAGGAGCGTGCCACCATGCCCGGCTAC AGTAGGTGGGATTATAGGAGCATGCCACCATGCCCGGCTAC < 41bp 1 0.255976121081417 1 0.570464074611664 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control MFSD13A ENSG00000138111 UTR3 Human protein_coding chr10:104235971 chr10:104235972 . . 0 22 hm5C_associated_SNPs_8774 0 0 0 1 104235972 104235995 mRNA hsa-miR-93 TMEM180 miRanda miRanda
969 chr10 104235978 104235978 1 + C T rs11595149 104235971 + 104235951 104235991 41 AGTAGGTGGGATTATAGGAGCGTGCCACCATGCCCGGCTAC AGTAGGTGGGATTATAGGAGCGTGCCATCATGCCCGGCTAC < 41bp 1 0.272739789206177 1 0.507806658744812 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control MFSD13A ENSG00000138111 UTR3 Human protein_coding chr10:104235971 chr10:104235978 . . 0 28 hm5C_associated_SNPs_8775 0 0 0 1 104235972 104235995 mRNA hsa-miR-93 TMEM180 miRanda miRanda
970 chr10 124923935 124923935 1 + T C rs572286922 124923943 + 124923923 124923963 41 TTTTCAATCTTATTAGGGTGCAGAAGGAAAACTAATAAGAA TTTTCAATCTTACTAGGGTGCAGAAGGAAAACTAATAAGAA < 41bp 1 0.770741125975907 1 0.598348140716553 experiment 0.458517748048186 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BUB3 ENSG00000154473 UTR3 Human protein_coding chr10:124923943 chr10:124923935 . . 0 13 hm5C_associated_SNPs_8823 0 0 1 1 124923928 124923948 mRNA hsa-miR-544 BUB3 miRanda miRanda
971 chr11 727310 727310 1 + T C rs12285459 727321 + 727301 727341 41 TGGCCCCTGTGATGCTCCCCCATCCCCACCCACTTCTACAT TGGCCCCTGCGATGCTCCCCCATCCCCACCCACTTCTACAT < 41bp 1 0.121503057957657 1 0.352604746818542 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPS8L2 ENSG00000177106 UTR3 Human protein_coding chr11:727321 chr11:727310 . . 0 10 hm5C_associated_SNPs_8885 0 0 1 1 727309 727330 mRNA hsa-miR-491-5p EPS8L2 miRanda miRanda
972 chr11 727310 727310 1 + T C rs12285459 727326 + 727306 727346 41 CCTGTGATGCTCCCCCATCCCCACCCACTTCTACATCCATC CCTGCGATGCTCCCCCATCCCCACCCACTTCTACATCCATC < 41bp 1 0.151867651608327 1 0.0846614241600037 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPS8L2 ENSG00000177106 UTR3 Human protein_coding chr11:727326 chr11:727310 . . 0 5 hm5C_associated_SNPs_8886 0 0 1 1 727309 727330 mRNA hsa-miR-491-5p EPS8L2 miRanda miRanda
973 chr11 727310 727310 1 + T C rs12285459 727329 + 727309 727349 41 GTGATGCTCCCCCATCCCCACCCACTTCTACATCCATCCAC GCGATGCTCCCCCATCCCCACCCACTTCTACATCCATCCAC < 41bp 1 0.133620733535153 1 0.0372576415538788 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPS8L2 ENSG00000177106 UTR3 Human protein_coding chr11:727329 chr11:727310 . . 0 2 hm5C_associated_SNPs_8887 0 0 1 1 727309 727330 mRNA hsa-miR-491-5p EPS8L2 miRanda miRanda
974 chr11 764957 764957 1 + T C rs537502977 764950 + 764930 764970 41 TTTACAAATTGGAGCAGGGACAGATCATAGATTTCTGATTT TTTACAAATTGGAGCAGGGACAGATCACAGATTTCTGATTT < 41bp 1 0.449174691430826 1 0.342233538627625 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TALDO1 ENSG00000177156 UTR3 Human protein_coding chr11:764950 chr11:764957 . . 0 28 hm5C_associated_SNPs_8888 0 0 1 3 764948 764970 mRNA hsa-miR-361-5p TALDO1 miRanda miRanda
975 chr11 764957 764957 1 + T C rs537502977 764950 + 764930 764970 41 TTTACAAATTGGAGCAGGGACAGATCATAGATTTCTGATTT TTTACAAATTGGAGCAGGGACAGATCACAGATTTCTGATTT < 41bp 1 0.449174691430826 1 0.342233538627625 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TALDO1 ENSG00000177156 UTR3 Human protein_coding chr11:764950 chr11:764957 . . 0 28 hm5C_associated_SNPs_8888 0 0 1 3 764945 764970 mRNA hsa-miR-383 TALDO1 miRanda miRanda
976 chr11 764957 764957 1 + T C rs537502977 764950 + 764930 764970 41 TTTACAAATTGGAGCAGGGACAGATCATAGATTTCTGATTT TTTACAAATTGGAGCAGGGACAGATCACAGATTTCTGATTT < 41bp 1 0.449174691430826 1 0.342233538627625 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TALDO1 ENSG00000177156 UTR3 Human protein_coding chr11:764950 chr11:764957 . . 0 28 hm5C_associated_SNPs_8888 0 0 1 3 764945 764967 mRNA hsa-miR-539 TALDO1 miRanda miRanda
977 chr11 764957 764957 1 + T C rs537502977 764955 + 764935 764975 41 AAATTGGAGCAGGGACAGATCATAGATTTCTGATTTTATGT AAATTGGAGCAGGGACAGATCACAGATTTCTGATTTTATGT < 41bp 1 0.57116919878005 1 0.138360530138016 experiment 0.8576616024399 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TALDO1 ENSG00000177156 UTR3 Human protein_coding chr11:764955 chr11:764957 . . 0 23 hm5C_associated_SNPs_8889 0 0 1 3 764948 764970 mRNA hsa-miR-361-5p TALDO1 miRanda miRanda
978 chr11 764957 764957 1 + T C rs537502977 764955 + 764935 764975 41 AAATTGGAGCAGGGACAGATCATAGATTTCTGATTTTATGT AAATTGGAGCAGGGACAGATCACAGATTTCTGATTTTATGT < 41bp 1 0.57116919878005 1 0.138360530138016 experiment 0.8576616024399 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TALDO1 ENSG00000177156 UTR3 Human protein_coding chr11:764955 chr11:764957 . . 0 23 hm5C_associated_SNPs_8889 0 0 1 3 764945 764970 mRNA hsa-miR-383 TALDO1 miRanda miRanda
979 chr11 764957 764957 1 + T C rs537502977 764955 + 764935 764975 41 AAATTGGAGCAGGGACAGATCATAGATTTCTGATTTTATGT AAATTGGAGCAGGGACAGATCACAGATTTCTGATTTTATGT < 41bp 1 0.57116919878005 1 0.138360530138016 experiment 0.8576616024399 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TALDO1 ENSG00000177156 UTR3 Human protein_coding chr11:764955 chr11:764957 . . 0 23 hm5C_associated_SNPs_8889 0 0 1 3 764945 764967 mRNA hsa-miR-539 TALDO1 miRanda miRanda
980 chr11 3847360 3847360 1 + C T rs116386717 3847345 + 3847325 3847365 41 GTGGAGGTGGTGTTCTATACCTAAAGGATGACCTGCTCCAG GTGGAGGTGGTGTTCTATACCTAAAGGATGACCTGTTCCAG < 41bp 1 0.732853701341978 1 0.708333730697632 experiment 0.534292597316044 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PGAP2 ENSG00000148985 UTR3 Human protein_coding chr11:3847345 chr11:3847360 . . 0 36 hm5C_associated_SNPs_8925 0 0 1 1 3847353 3847379 mRNA hsa-miR-138 PGAP2 miRanda miRanda
981 chr11 8707011 8707011 1 + A G rs375348244 8706993 + 8706973 8707013 41 AGGCTTATGCTTTGCCGAGACTAGAGTCACATCCTGACACA AGGCTTATGCTTTGCCGAGACTAGAGTCACATCCTGACGCA < 41bp 1 0.773973517015069 1 0.545092880725861 experiment 0.452052965969863 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8706993 chr11:8707011 . . 0 39 hm5C_associated_SNPs_8941 0 0 1 1 8706996 8707015 mRNA hsa-miR-599 SNORA45 miRanda miRanda
982 chr11 8707011 8707011 1 + A G rs375348244 8707005 + 8706985 8707025 41 TGCCGAGACTAGAGTCACATCCTGACACAACTCTTGTCCTG TGCCGAGACTAGAGTCACATCCTGACGCAACTCTTGTCCTG < 41bp 1 0.319807424629308 1 0.18434002995491 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707005 chr11:8707011 . . 0 27 hm5C_associated_SNPs_8942 0 0 1 1 8706996 8707015 mRNA hsa-miR-599 SNORA45 miRanda miRanda
983 chr11 8707011 8707011 1 + A G rs375348244 8707006 + 8706986 8707026 41 GCCGAGACTAGAGTCACATCCTGACACAACTCTTGTCCTGG GCCGAGACTAGAGTCACATCCTGACGCAACTCTTGTCCTGG < 41bp 1 0.222980435450771 1 0.686380445957184 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707006 chr11:8707011 . . 0 26 hm5C_associated_SNPs_8943 0 0 1 1 8706996 8707015 mRNA hsa-miR-599 SNORA45 miRanda miRanda
984 chr11 8707011 8707011 1 + A G rs375348244 8707010 + 8706990 8707030 41 AGACTAGAGTCACATCCTGACACAACTCTTGTCCTGGTGTG AGACTAGAGTCACATCCTGACGCAACTCTTGTCCTGGTGTG < 41bp 1 0.45430713584209 1 0.738164722919464 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707010 chr11:8707011 . . 0 22 hm5C_associated_SNPs_8944 0 0 1 1 8706996 8707015 mRNA hsa-miR-599 SNORA45 miRanda miRanda
985 chr11 8707011 8707011 1 + A G rs375348244 8707017 + 8706997 8707037 41 AGTCACATCCTGACACAACTCTTGTCCTGGTGTGCTAGAGT AGTCACATCCTGACGCAACTCTTGTCCTGGTGTGCTAGAGT < 41bp 1 0.135408888737931 1 0.105053573846817 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707017 chr11:8707011 . . 0 15 hm5C_associated_SNPs_8945 0 0 1 1 8706996 8707015 mRNA hsa-miR-599 SNORA45 miRanda miRanda
986 chr11 8941215 8941215 1 + A G rs4910157 8941225 + 8941205 8941245 41 AGACAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCG AGACAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCG < 41bp 1 0.403394128012853 1 0.30461174249649 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKIP1 ENSG00000166452 UTR3 Human protein_coding chr11:8941225 chr11:8941215 . . 0 11 hm5C_associated_SNPs_8967 0 1 1 1 8941197 8941221 mRNA hsa-miR-125a-3p C11orf17 miRanda miRanda
987 chr11 8941215 8941215 1 + A G rs4910157 8941226 + 8941206 8941246 41 GACAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGT GACAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGT < 41bp 1 0.396635148203866 1 0.719988942146301 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKIP1 ENSG00000166452 UTR3 Human protein_coding chr11:8941226 chr11:8941215 . . 0 10 hm5C_associated_SNPs_8968 0 1 1 1 8941197 8941221 mRNA hsa-miR-125a-3p C11orf17 miRanda miRanda
988 chr11 9450377 9450377 1 + T G rs2290423 9450358 + 9450338 9450378 41 GTTTCATCTGTGTCTGGTAGCAGTGTCTGTCTGTGTTTTTC GTTTCATCTGTGTCTGGTAGCAGTGTCTGTCTGTGTTTTGC < 41bp 1 0.16061987434005 1 0.326037287712097 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA23 ENSG00000201998 ncRNA_exonic Human snoRNA chr11:9450358 chr11:9450377 . . 0 40 hm5C_associated_SNPs_8978 0 0 1 1 9450375 9450393 mRNA hsa-miR-31 SNORA23 miRanda miRanda
989 chr11 9450377 9450377 1 + T G rs2290423 9450364 + 9450344 9450384 41 TCTGTGTCTGGTAGCAGTGTCTGTCTGTGTTTTTCATTCAG TCTGTGTCTGGTAGCAGTGTCTGTCTGTGTTTTGCATTCAG < 41bp 1 0.0662625049210205 1 0.154646307229996 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA23 ENSG00000201998 ncRNA_exonic Human snoRNA chr11:9450364 chr11:9450377 . . 0 34 hm5C_associated_SNPs_8979 0 0 1 1 9450375 9450393 mRNA hsa-miR-31 SNORA23 miRanda miRanda
990 chr11 9450377 9450377 1 + T G rs2290423 9450378 + 9450358 9450398 41 CAGTGTCTGTCTGTGTTTTTCATTCAGATCTTGCTATCCAC CAGTGTCTGTCTGTGTTTTGCATTCAGATCTTGCTATCCAC < 41bp 1 0.0406991547419373 1 0.0544078350067139 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA23 ENSG00000201998 ncRNA_exonic Human snoRNA chr11:9450378 chr11:9450377 . . 0 20 hm5C_associated_SNPs_8980 0 0 1 1 9450375 9450393 mRNA hsa-miR-31 SNORA23 miRanda miRanda
991 chr11 9450377 9450377 1 + T G rs2290423 9450382 + 9450362 9450402 41 GTCTGTCTGTGTTTTTCATTCAGATCTTGCTATCCACACAA GTCTGTCTGTGTTTTGCATTCAGATCTTGCTATCCACACAA < 41bp 1 0.244300043438865 1 0.512649893760681 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA23 ENSG00000201998 ncRNA_exonic Human snoRNA chr11:9450382 chr11:9450377 . . 0 16 hm5C_associated_SNPs_8981 0 0 1 1 9450375 9450393 mRNA hsa-miR-31 SNORA23 miRanda miRanda
992 chr11 9450377 9450377 1 + T G rs2290423 9450395 + 9450375 9450415 41 TTTCATTCAGATCTTGCTATCCACACAAACATCATGCGGCC TTGCATTCAGATCTTGCTATCCACACAAACATCATGCGGCC < 41bp 1 0.257992158263599 1 0.0410154759883881 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORA23 ENSG00000201998 ncRNA_exonic Human snoRNA chr11:9450395 chr11:9450377 . . 0 3 hm5C_associated_SNPs_8982 0 0 1 1 9450375 9450393 mRNA hsa-miR-31 SNORA23 miRanda miRanda
993 chr11 9450377 9450377 1 + T G rs2290423 9450396 + 9450376 9450416 41 TTCATTCAGATCTTGCTATCCACACAAACATCATGCGGCCA TGCATTCAGATCTTGCTATCCACACAAACATCATGCGGCCA < 41bp 1 0.15681403889929 1 0.0500051081180573 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA23 ENSG00000201998 ncRNA_exonic Human snoRNA chr11:9450396 chr11:9450377 . . 0 2 hm5C_associated_SNPs_8983 0 0 1 1 9450375 9450393 mRNA hsa-miR-31 SNORA23 miRanda miRanda
994 chr11 12281438 12281438 1 + C T rs35518829 12281442 + 12281422 12281462 41 CACCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT CACCCTGGAAGGCAGCTCCCCAGGTATCTCCACCTCCTTCT < 41bp 1 0.69362986172459 1 0.246012181043625 experiment 0.612740276550821 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281442 chr11:12281438 nonsynonymous SNV 0.993 0 17 hm5C_associated_SNPs_8993 0 0 1 1 12281433 12281444 mRNA hsa-miR-203 MICAL2 miRanda miRanda
995 chr11 35828455 35828455 1 + C T rs182988466 35828454 + 35828434 35828474 41 CATTTGTGAAAATTGTGGTGCCATGAATTAAGATGGATGAC CATTTGTGAAAATTGTGGTGCTATGAATTAAGATGGATGAC < 41bp 1 0.138426642744543 1 0.0937677919864655 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM44 ENSG00000166326 UTR3 Human protein_coding chr11:35828454 chr11:35828455 . . 0 22 hm5C_associated_SNPs_9040 0 0 1 1 35828438 35828458 mRNA hsa-miR-183 TRIM44 miRanda miRanda
996 chr11 43365468 43365468 1 + C T rs574754979 43365474 + 43365454 43365494 41 CTTCATTACCATTACCTCTACACTGCAGAAGAAGCAAAACT CTTCATTACCATTATCTCTACACTGCAGAAGAAGCAAAACT < 41bp 1 0.30687136673765 1 0.284277021884918 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control API5 ENSG00000254907 ncRNA_intronic Human antisense chr11:43365474 chr11:43365468 . . 0 15 hm5C_associated_SNPs_9042 0 0 0 1 43365465 43365484 mRNA hsa-miR-544 API5 miRanda miRanda
997 chr11 43876829 43876829 1 + A G rs11037684 43876844 + 43876824 43876864 41 GCCAGATGCTCCAGCATATGCACGTTCACTGCAAAGCACCC GCCAGGTGCTCCAGCATATGCACGTTCACTGCAAAGCACCC < 41bp 1 0.768083186260188 1 0.0899722576141357 experiment 0.463833627479624 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HSD17B12 ENSG00000246250 ncRNA_intronic Human antisense chr11:43876844 chr11:43876829 . . 0 6 hm5C_associated_SNPs_9045 0 0 1 1 43876826 43876846 mRNA hsa-miR-33b HSD17B12 miRanda miRanda
998 chr11 43876829 43876829 1 + A G rs11037684 43876846 + 43876826 43876866 41 CAGATGCTCCAGCATATGCACGTTCACTGCAAAGCACCCTA CAGGTGCTCCAGCATATGCACGTTCACTGCAAAGCACCCTA < 41bp 1 0.107658175574866 1 0.0472550392150879 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HSD17B12 ENSG00000246250 ncRNA_intronic Human antisense chr11:43876846 chr11:43876829 . . 0 4 hm5C_associated_SNPs_9046 0 0 1 1 43876826 43876846 mRNA hsa-miR-33b HSD17B12 miRanda miRanda
999 chr11 43902650 43902650 1 + G A rs11555640 43902631 + 43902611 43902651 41 AAAGGAAGTGCCCTTATCCACGACCAAGCTCTTCCACCTGC AAAGGAAGTGCCCTTATCCACGACCAAGCTCTTCCACCTAC < 41bp 1 0.481953842643265 1 0.0449461936950684 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALKBH3 ENSG00000166199 UTR5 Human protein_coding chr11:43902631 chr11:43902650 . . 0 40 hm5C_associated_SNPs_9048 0 0 0 1 43902629 43902651 mRNA hsa-miR-125a-3p ALKBH3 miRanda miRanda
1000 chr11 43941637 43941637 1 + C G rs36088299 43941621 + 43941601 43941641 41 AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGCTGCT AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGGTGCT < 41bp 1 0.376154537477593 1 0.81612503528595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3-AS1 ENSG00000244926 ncRNA_intronic Human antisense chr11:43941621 chr11:43941637 . . 0 37 hm5C_associated_SNPs_9049 0 0 1 9 43941622 43941642 mRNA hsa-miR-15a ALKBH3 miRanda miRanda
1001 chr11 43941637 43941637 1 + C G rs36088299 43941621 + 43941601 43941641 41 AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGCTGCT AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGGTGCT < 41bp 1 0.376154537477593 1 0.81612503528595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3-AS1 ENSG00000244926 ncRNA_intronic Human antisense chr11:43941621 chr11:43941637 . . 0 37 hm5C_associated_SNPs_9049 0 0 1 9 43941621 43941642 mRNA hsa-miR-16 ALKBH3 miRanda miRanda
1002 chr11 43941637 43941637 1 + C G rs36088299 43941621 + 43941601 43941641 41 AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGCTGCT AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGGTGCT < 41bp 1 0.376154537477593 1 0.81612503528595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3-AS1 ENSG00000244926 ncRNA_intronic Human antisense chr11:43941621 chr11:43941637 . . 0 37 hm5C_associated_SNPs_9049 0 0 1 9 43941614 43941639 mRNA hsa-miR-29a ALKBH3 miRanda miRanda
1003 chr11 43941637 43941637 1 + C G rs36088299 43941621 + 43941601 43941641 41 AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGCTGCT AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGGTGCT < 41bp 1 0.376154537477593 1 0.81612503528595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3-AS1 ENSG00000244926 ncRNA_intronic Human antisense chr11:43941621 chr11:43941637 . . 0 37 hm5C_associated_SNPs_9049 0 0 1 9 43941613 43941639 mRNA hsa-miR-29b ALKBH3 miRanda miRanda
1004 chr11 43941637 43941637 1 + C G rs36088299 43941621 + 43941601 43941641 41 AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGCTGCT AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGGTGCT < 41bp 1 0.376154537477593 1 0.81612503528595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3-AS1 ENSG00000244926 ncRNA_intronic Human antisense chr11:43941621 chr11:43941637 . . 0 37 hm5C_associated_SNPs_9049 0 0 1 9 43941621 43941642 mRNA hsa-miR-15b ALKBH3 miRanda miRanda
1005 chr11 43941637 43941637 1 + C G rs36088299 43941621 + 43941601 43941641 41 AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGCTGCT AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGGTGCT < 41bp 1 0.376154537477593 1 0.81612503528595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3-AS1 ENSG00000244926 ncRNA_intronic Human antisense chr11:43941621 chr11:43941637 . . 0 37 hm5C_associated_SNPs_9049 0 0 1 9 43941622 43941642 mRNA hsa-miR-195 ALKBH3 miRanda miRanda
1006 chr11 43941637 43941637 1 + C G rs36088299 43941621 + 43941601 43941641 41 AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGCTGCT AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGGTGCT < 41bp 1 0.376154537477593 1 0.81612503528595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3-AS1 ENSG00000244926 ncRNA_intronic Human antisense chr11:43941621 chr11:43941637 . . 0 37 hm5C_associated_SNPs_9049 0 0 1 9 43941614 43941639 mRNA hsa-miR-29c ALKBH3 miRanda miRanda
1007 chr11 43941637 43941637 1 + C G rs36088299 43941621 + 43941601 43941641 41 AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGCTGCT AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGGTGCT < 41bp 1 0.376154537477593 1 0.81612503528595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3-AS1 ENSG00000244926 ncRNA_intronic Human antisense chr11:43941621 chr11:43941637 . . 0 37 hm5C_associated_SNPs_9049 0 0 1 9 43941622 43941642 mRNA hsa-miR-424 ALKBH3 miRanda miRanda
1008 chr11 43941637 43941637 1 + C G rs36088299 43941621 + 43941601 43941641 41 AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGCTGCT AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGGTGCT < 41bp 1 0.376154537477593 1 0.81612503528595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3-AS1 ENSG00000244926 ncRNA_intronic Human antisense chr11:43941621 chr11:43941637 . . 0 37 hm5C_associated_SNPs_9049 0 0 1 9 43941623 43941642 mRNA hsa-miR-497 ALKBH3 miRanda miRanda
1009 chr11 45833077 45833077 1 + A C rs140259547 45833079 + 45833059 45833099 41 TATCAGAAAGTTGAAGGAACCAGTGTTTACAAGTAATACCA TATCAGAAAGTTGAAGGACCCAGTGTTTACAAGTAATACCA < 41bp 1 0.401328020627443 1 0.340782105922699 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC35C1 ENSG00000181830 UTR3 Human protein_coding chr11:45833079 chr11:45833077 . . 0 19 hm5C_associated_SNPs_9075 0 0 1 7 45833062 45833089 mRNA hsa-miR-30a SLC35C1 miRanda miRanda
1010 chr11 45833077 45833077 1 + A C rs140259547 45833079 + 45833059 45833099 41 TATCAGAAAGTTGAAGGAACCAGTGTTTACAAGTAATACCA TATCAGAAAGTTGAAGGACCCAGTGTTTACAAGTAATACCA < 41bp 1 0.401328020627443 1 0.340782105922699 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC35C1 ENSG00000181830 UTR3 Human protein_coding chr11:45833079 chr11:45833077 . . 0 19 hm5C_associated_SNPs_9075 0 0 1 7 45833061 45833089 mRNA hsa-miR-30c SLC35C1 miRanda miRanda
1011 chr11 45833077 45833077 1 + A C rs140259547 45833079 + 45833059 45833099 41 TATCAGAAAGTTGAAGGAACCAGTGTTTACAAGTAATACCA TATCAGAAAGTTGAAGGACCCAGTGTTTACAAGTAATACCA < 41bp 1 0.401328020627443 1 0.340782105922699 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC35C1 ENSG00000181830 UTR3 Human protein_coding chr11:45833079 chr11:45833077 . . 0 19 hm5C_associated_SNPs_9075 0 0 1 7 45833068 45833089 mRNA hsa-miR-30d SLC35C1 miRanda miRanda
1012 chr11 45833077 45833077 1 + A C rs140259547 45833079 + 45833059 45833099 41 TATCAGAAAGTTGAAGGAACCAGTGTTTACAAGTAATACCA TATCAGAAAGTTGAAGGACCCAGTGTTTACAAGTAATACCA < 41bp 1 0.401328020627443 1 0.340782105922699 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC35C1 ENSG00000181830 UTR3 Human protein_coding chr11:45833079 chr11:45833077 . . 0 19 hm5C_associated_SNPs_9075 0 0 1 7 45833067 45833089 mRNA hsa-miR-30b SLC35C1 miRanda miRanda
1013 chr11 45833077 45833077 1 + A C rs140259547 45833079 + 45833059 45833099 41 TATCAGAAAGTTGAAGGAACCAGTGTTTACAAGTAATACCA TATCAGAAAGTTGAAGGACCCAGTGTTTACAAGTAATACCA < 41bp 1 0.401328020627443 1 0.340782105922699 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC35C1 ENSG00000181830 UTR3 Human protein_coding chr11:45833079 chr11:45833077 . . 0 19 hm5C_associated_SNPs_9075 0 0 1 7 45833063 45833086 mRNA hsa-miR-141 SLC35C1 miRanda miRanda
1014 chr11 45833077 45833077 1 + A C rs140259547 45833079 + 45833059 45833099 41 TATCAGAAAGTTGAAGGAACCAGTGTTTACAAGTAATACCA TATCAGAAAGTTGAAGGACCCAGTGTTTACAAGTAATACCA < 41bp 1 0.401328020627443 1 0.340782105922699 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC35C1 ENSG00000181830 UTR3 Human protein_coding chr11:45833079 chr11:45833077 . . 0 19 hm5C_associated_SNPs_9075 0 0 1 7 45833063 45833086 mRNA hsa-miR-200a SLC35C1 miRanda miRanda
1015 chr11 45833077 45833077 1 + A C rs140259547 45833079 + 45833059 45833099 41 TATCAGAAAGTTGAAGGAACCAGTGTTTACAAGTAATACCA TATCAGAAAGTTGAAGGACCCAGTGTTTACAAGTAATACCA < 41bp 1 0.401328020627443 1 0.340782105922699 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC35C1 ENSG00000181830 UTR3 Human protein_coding chr11:45833079 chr11:45833077 . . 0 19 hm5C_associated_SNPs_9075 0 0 1 7 45833062 45833089 mRNA hsa-miR-30e SLC35C1 miRanda miRanda
1016 chr11 57508379 57508379 1 + C G rs115411262 57508393 + 57508373 57508413 41 ACTAACCCTCTGACATACTCCCCACACCCAGTTGATGGCTT ACTAACGCTCTGACATACTCCCCACACCCAGTTGATGGCTT < 41bp 1 0.121833735202305 1 0.383266687393188 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMX2-CTNND1 ENSG00000213593 UTR3 Human protein_coding chr11:57508393 chr11:57508379 . . 0 7 hm5C_associated_SNPs_9130 0 0 1 1 57508377 57508398 mRNA hsa-miR-491-5p TMX2 miRanda miRanda
1017 chr11 60689674 60689674 1 + G A rs372992625 60689694 + 60689674 60689714 41 GAGCTGAGCTGCTTCGGGGCCATGCAGCCCTCCTGCCAGCC AAGCTGAGCTGCTTCGGGGCCATGCAGCCCTCCTGCCAGCC < 41bp 1 0.302338658356447 1 0.0984079837799072 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM109 ENSG00000256196 ncRNA_intronic Human antisense chr11:60689694 chr11:60689674 . . 0 1 hm5C_associated_SNPs_9161 0 0 1 1 60689650 60689675 mRNA hsa-miR-9 TMEM109 miRanda miRanda
1018 chr11 64807695 64807695 1 + G A rs377178162 64807698 + 64807678 64807718 41 TTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCA TTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCA < 41bp 1 0.598148578038473 1 0.0616566836833954 experiment 0.803702843923055 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807698 chr11:64807695 . . 0 18 hm5C_associated_SNPs_9279 0 0 0 4 64807687 64807709 mRNA hsa-let-7b SNX15 miRanda miRanda
1019 chr11 64807695 64807695 1 + G A rs377178162 64807698 + 64807678 64807718 41 TTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCA TTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCA < 41bp 1 0.598148578038473 1 0.0616566836833954 experiment 0.803702843923055 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807698 chr11:64807695 . . 0 18 hm5C_associated_SNPs_9279 0 0 0 4 64807687 64807709 mRNA hsa-let-7e SNX15 miRanda miRanda
1020 chr11 64807695 64807695 1 + G A rs377178162 64807698 + 64807678 64807718 41 TTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCA TTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCA < 41bp 1 0.598148578038473 1 0.0616566836833954 experiment 0.803702843923055 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807698 chr11:64807695 . . 0 18 hm5C_associated_SNPs_9279 0 0 0 4 64807687 64807709 mRNA hsa-let-7g SNX15 miRanda miRanda
1021 chr11 64807695 64807695 1 + G A rs377178162 64807698 + 64807678 64807718 41 TTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCA TTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCA < 41bp 1 0.598148578038473 1 0.0616566836833954 experiment 0.803702843923055 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807698 chr11:64807695 . . 0 18 hm5C_associated_SNPs_9279 0 0 0 4 64807687 64807709 mRNA hsa-let-7i SNX15 miRanda miRanda
1022 chr11 64807708 64807708 1 + C G rs546593699 64807698 + 64807678 64807718 41 TTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCA TTGGCCAGGCTGGTCTCGAACTCCTGACCTGAAGTGATCCA < 41bp 1 0.485124302539718 1 0.0808112323284149 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807698 chr11:64807708 . . 0 31 hm5C_associated_SNPs_9280 0 0 0 4 64807687 64807709 mRNA hsa-let-7b SNX15 miRanda miRanda
1023 chr11 64807708 64807708 1 + C G rs546593699 64807698 + 64807678 64807718 41 TTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCA TTGGCCAGGCTGGTCTCGAACTCCTGACCTGAAGTGATCCA < 41bp 1 0.485124302539718 1 0.0808112323284149 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807698 chr11:64807708 . . 0 31 hm5C_associated_SNPs_9280 0 0 0 4 64807687 64807709 mRNA hsa-let-7e SNX15 miRanda miRanda
1024 chr11 64807708 64807708 1 + C G rs546593699 64807698 + 64807678 64807718 41 TTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCA TTGGCCAGGCTGGTCTCGAACTCCTGACCTGAAGTGATCCA < 41bp 1 0.485124302539718 1 0.0808112323284149 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807698 chr11:64807708 . . 0 31 hm5C_associated_SNPs_9280 0 0 0 4 64807687 64807709 mRNA hsa-let-7g SNX15 miRanda miRanda
1025 chr11 64807708 64807708 1 + C G rs546593699 64807698 + 64807678 64807718 41 TTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCA TTGGCCAGGCTGGTCTCGAACTCCTGACCTGAAGTGATCCA < 41bp 1 0.485124302539718 1 0.0808112323284149 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807698 chr11:64807708 . . 0 31 hm5C_associated_SNPs_9280 0 0 0 4 64807687 64807709 mRNA hsa-let-7i SNX15 miRanda miRanda
1026 chr11 65190887 65190887 1 + C A rs79376422 65190874 + 65190854 65190894 41 GGTATGTAATTTTCGCTCGGCCTGGGACGGGGCCCAGGCCG GGTATGTAATTTTCGCTCGGCCTGGGACGGGGCACAGGCCG < 41bp 1 0.235524907211468 1 0.241807460784912 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190874 chr11:65190887 . . 0 34 hm5C_associated_SNPs_9303 0 0 1 1 65190869 65190889 lncRNA hsa-miR-296-5p NEAT1 miRanda starBase2
1027 chr11 65190887 65190887 1 + C A rs79376422 65190886 + 65190866 65190906 41 TCGCTCGGCCTGGGACGGGGCCCAGGCCGGGCCCAGCCTGG TCGCTCGGCCTGGGACGGGGCACAGGCCGGGCCCAGCCTGG < 41bp 1 0.524728984108208 1 0.541712641716003 experiment 0.950542031783584 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190886 chr11:65190887 . . 0 22 hm5C_associated_SNPs_9304 0 0 1 1 65190869 65190889 lncRNA hsa-miR-296-5p NEAT1 miRanda starBase2
1028 chr11 65190887 65190887 1 + C A rs79376422 65190888 + 65190868 65190908 41 GCTCGGCCTGGGACGGGGCCCAGGCCGGGCCCAGCCTGGTG GCTCGGCCTGGGACGGGGCACAGGCCGGGCCCAGCCTGGTG < 41bp 1 0.630980922438571 1 0.499689549207687 experiment 0.738038155122859 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190888 chr11:65190887 . . 0 20 hm5C_associated_SNPs_9305 0 0 1 1 65190869 65190889 lncRNA hsa-miR-296-5p NEAT1 miRanda starBase2
1029 chr11 65190887 65190887 1 + C A rs79376422 65190892 + 65190872 65190912 41 GGCCTGGGACGGGGCCCAGGCCGGGCCCAGCCTGGTGGAGC GGCCTGGGACGGGGCACAGGCCGGGCCCAGCCTGGTGGAGC < 41bp 1 0.588664024243135 1 0.817917346954346 experiment 0.82267195151373 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190892 chr11:65190887 . . 0 16 hm5C_associated_SNPs_9306 0 0 1 1 65190869 65190889 lncRNA hsa-miR-296-5p NEAT1 miRanda starBase2
1030 chr11 65190887 65190887 1 + C A rs79376422 65190893 + 65190873 65190913 41 GCCTGGGACGGGGCCCAGGCCGGGCCCAGCCTGGTGGAGCG GCCTGGGACGGGGCACAGGCCGGGCCCAGCCTGGTGGAGCG < 41bp 1 0.642588093536376 1 0.85949695110321 experiment 0.714823812927247 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190893 chr11:65190887 . . 0 15 hm5C_associated_SNPs_9307 0 0 1 1 65190869 65190889 lncRNA hsa-miR-296-5p NEAT1 miRanda starBase2
1031 chr11 65190887 65190887 1 + C A rs79376422 65190897 + 65190877 65190917 41 GGGACGGGGCCCAGGCCGGGCCCAGCCTGGTGGAGCGTCCA GGGACGGGGCACAGGCCGGGCCCAGCCTGGTGGAGCGTCCA < 41bp 1 0.262981941851825 1 0.108483761548996 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190897 chr11:65190887 . . 0 11 hm5C_associated_SNPs_9308 0 0 1 1 65190869 65190889 lncRNA hsa-miR-296-5p NEAT1 miRanda starBase2
1032 chr11 65190887 65190887 1 + C A rs79376422 65190898 + 65190878 65190918 41 GGACGGGGCCCAGGCCGGGCCCAGCCTGGTGGAGCGTCCAG GGACGGGGCACAGGCCGGGCCCAGCCTGGTGGAGCGTCCAG < 41bp 1 0.309601311889283 1 0.111527174711227 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190898 chr11:65190887 . . 0 10 hm5C_associated_SNPs_9309 0 0 1 1 65190869 65190889 lncRNA hsa-miR-296-5p NEAT1 miRanda starBase2
1033 chr11 65190887 65190887 1 + C A rs79376422 65190899 + 65190879 65190919 41 GACGGGGCCCAGGCCGGGCCCAGCCTGGTGGAGCGTCCAGG GACGGGGCACAGGCCGGGCCCAGCCTGGTGGAGCGTCCAGG < 41bp 1 0.420154131569223 1 0.0944487750530243 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190899 chr11:65190887 . . 0 9 hm5C_associated_SNPs_9310 0 0 1 1 65190869 65190889 lncRNA hsa-miR-296-5p NEAT1 miRanda starBase2
1034 chr11 65199635 65199635 1 + C T rs192076013 65199650 + 65199630 65199670 41 ACTCTCCTTTGGGTAGATACCCAGTAGTGGGATTGCTGGAT ACTCTTCTTTGGGTAGATACCCAGTAGTGGGATTGCTGGAT < 41bp 1 0.0572440681815212 1 0.655812084674835 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65199650 chr11:65199635 . . 0 6 hm5C_associated_SNPs_9321 0 0 1 1 65199618 65199639 lncRNA hsa-miR-4428 NEAT1 miRanda starBase2
1035 chr11 65267108 65267108 1 + T C rs11540782 65267103 + 65267083 65267123 41 TTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGT TTGGGAGTGGTAGGATGAAACAATTCGGAGAAGATAGAAGT < 41bp 1 0.16668851376012 1 0.53546530008316 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267103 chr11:65267108 . . 0 26 hm5C_associated_SNPs_9322 0 0 1 2 65267091 65267114 lncRNA hsa-miR-515-5p MALAT1 miRanda starBase2
1036 chr11 65267108 65267108 1 + T C rs11540782 65267103 + 65267083 65267123 41 TTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGT TTGGGAGTGGTAGGATGAAACAATTCGGAGAAGATAGAAGT < 41bp 1 0.16668851376012 1 0.53546530008316 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267103 chr11:65267108 . . 0 26 hm5C_associated_SNPs_9322 0 0 1 2 65267092 65267114 lncRNA hsa-miR-519e-5p MALAT1 miRanda starBase2
1037 chr11 65267892 65267892 1 + G A rs528557696 65267898 + 65267878 65267918 41 CAGAAGTGGATTCAGTGAATCTAGGAAGACAGCAGCAGACA CAGAAGTGGATTCAATGAATCTAGGAAGACAGCAGCAGACA < 41bp 1 0.791806490647625 1 0.527490019798279 experiment 0.41638701870475 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267898 chr11:65267892 . . 0 15 hm5C_associated_SNPs_9323 0 0 1 1 65267882 65267905 lncRNA hsa-miR-384 MALAT1 miRanda starBase2
1038 chr11 65267897 65267897 1 + T C rs142149322 65267898 + 65267878 65267918 41 CAGAAGTGGATTCAGTGAATCTAGGAAGACAGCAGCAGACA CAGAAGTGGATTCAGTGAACCTAGGAAGACAGCAGCAGACA < 41bp 1 0.747769668308081 1 0.427713364362717 experiment 0.504460663383838 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267898 chr11:65267897 . . 0 20 hm5C_associated_SNPs_9324 0 0 1 1 65267882 65267905 lncRNA hsa-miR-384 MALAT1 miRanda starBase2
1039 chr11 65268198 65268198 1 + G A rs7927113 65268185 + 65268165 65268205 41 AGGCGTTGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGT AGGCGTTGTGCGTAGAGGATCCTAGACCAGCATACCAGTGT < 41bp 1 0.223459893830076 1 0.120077013969421 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268185 chr11:65268198 . . 0 34 hm5C_associated_SNPs_9326 0 0 1 3 65268189 65268213 lncRNA hsa-miR-212-5p MALAT1 miRanda starBase2
1040 chr11 65268198 65268198 1 + G A rs7927113 65268185 + 65268165 65268205 41 AGGCGTTGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGT AGGCGTTGTGCGTAGAGGATCCTAGACCAGCATACCAGTGT < 41bp 1 0.223459893830076 1 0.120077013969421 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268185 chr11:65268198 . . 0 34 hm5C_associated_SNPs_9326 0 0 1 3 65268189 65268211 lncRNA hsa-miR-1271-5p MALAT1 miRanda starBase2
1041 chr11 65268198 65268198 1 + G A rs7927113 65268185 + 65268165 65268205 41 AGGCGTTGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGT AGGCGTTGTGCGTAGAGGATCCTAGACCAGCATACCAGTGT < 41bp 1 0.223459893830076 1 0.120077013969421 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268185 chr11:65268198 . . 0 34 hm5C_associated_SNPs_9326 0 0 1 3 65268189 65268211 lncRNA hsa-miR-96-5p MALAT1 miRanda starBase2
1042 chr11 65268198 65268198 1 + G A rs7927113 65268191 + 65268171 65268211 41 TGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAG TGTGCGTAGAGGATCCTAGACCAGCATACCAGTGTGCCAAG < 41bp 1 0.483762664884478 1 0.084882527589798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268191 chr11:65268198 . . 0 28 hm5C_associated_SNPs_9327 0 0 1 3 65268189 65268213 lncRNA hsa-miR-212-5p MALAT1 miRanda starBase2
1043 chr11 65268198 65268198 1 + G A rs7927113 65268191 + 65268171 65268211 41 TGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAG TGTGCGTAGAGGATCCTAGACCAGCATACCAGTGTGCCAAG < 41bp 1 0.483762664884478 1 0.084882527589798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268191 chr11:65268198 . . 0 28 hm5C_associated_SNPs_9327 0 0 1 3 65268189 65268211 lncRNA hsa-miR-1271-5p MALAT1 miRanda starBase2
1044 chr11 65268198 65268198 1 + G A rs7927113 65268191 + 65268171 65268211 41 TGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAG TGTGCGTAGAGGATCCTAGACCAGCATACCAGTGTGCCAAG < 41bp 1 0.483762664884478 1 0.084882527589798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268191 chr11:65268198 . . 0 28 hm5C_associated_SNPs_9327 0 0 1 3 65268189 65268211 lncRNA hsa-miR-96-5p MALAT1 miRanda starBase2
1045 chr11 65268198 65268198 1 + G A rs7927113 65268195 + 65268175 65268215 41 CGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAGGCCA CGTAGAGGATCCTAGACCAGCATACCAGTGTGCCAAGGCCA < 41bp 1 0.184441705291428 1 0.0403631627559662 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268195 chr11:65268198 . . 0 24 hm5C_associated_SNPs_9328 0 0 1 3 65268189 65268213 lncRNA hsa-miR-212-5p MALAT1 miRanda starBase2
1046 chr11 65268198 65268198 1 + G A rs7927113 65268195 + 65268175 65268215 41 CGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAGGCCA CGTAGAGGATCCTAGACCAGCATACCAGTGTGCCAAGGCCA < 41bp 1 0.184441705291428 1 0.0403631627559662 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268195 chr11:65268198 . . 0 24 hm5C_associated_SNPs_9328 0 0 1 3 65268189 65268211 lncRNA hsa-miR-1271-5p MALAT1 miRanda starBase2
1047 chr11 65268198 65268198 1 + G A rs7927113 65268195 + 65268175 65268215 41 CGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAGGCCA CGTAGAGGATCCTAGACCAGCATACCAGTGTGCCAAGGCCA < 41bp 1 0.184441705291428 1 0.0403631627559662 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268195 chr11:65268198 . . 0 24 hm5C_associated_SNPs_9328 0 0 1 3 65268189 65268211 lncRNA hsa-miR-96-5p MALAT1 miRanda starBase2
1048 chr11 65268198 65268198 1 + G A rs7927113 65268207 + 65268187 65268227 41 TAGACCAGCATGCCAGTGTGCCAAGGCCACAGGGAAAGCGA TAGACCAGCATACCAGTGTGCCAAGGCCACAGGGAAAGCGA < 41bp 1 0.386108097464826 1 0.196993678808212 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268207 chr11:65268198 . . 0 12 hm5C_associated_SNPs_9329 0 0 1 3 65268189 65268213 lncRNA hsa-miR-212-5p MALAT1 miRanda starBase2
1049 chr11 65268198 65268198 1 + G A rs7927113 65268207 + 65268187 65268227 41 TAGACCAGCATGCCAGTGTGCCAAGGCCACAGGGAAAGCGA TAGACCAGCATACCAGTGTGCCAAGGCCACAGGGAAAGCGA < 41bp 1 0.386108097464826 1 0.196993678808212 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268207 chr11:65268198 . . 0 12 hm5C_associated_SNPs_9329 0 0 1 3 65268189 65268211 lncRNA hsa-miR-1271-5p MALAT1 miRanda starBase2
1050 chr11 65268198 65268198 1 + G A rs7927113 65268207 + 65268187 65268227 41 TAGACCAGCATGCCAGTGTGCCAAGGCCACAGGGAAAGCGA TAGACCAGCATACCAGTGTGCCAAGGCCACAGGGAAAGCGA < 41bp 1 0.386108097464826 1 0.196993678808212 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268207 chr11:65268198 . . 0 12 hm5C_associated_SNPs_9329 0 0 1 3 65268189 65268211 lncRNA hsa-miR-96-5p MALAT1 miRanda starBase2
1051 chr11 65268198 65268198 1 + G A rs7927113 65268208 + 65268188 65268228 41 AGACCAGCATGCCAGTGTGCCAAGGCCACAGGGAAAGCGAG AGACCAGCATACCAGTGTGCCAAGGCCACAGGGAAAGCGAG < 41bp 1 0.730660369557022 1 0.436343878507614 experiment 0.538679260885956 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268208 chr11:65268198 . . 0 11 hm5C_associated_SNPs_9330 0 0 1 3 65268189 65268213 lncRNA hsa-miR-212-5p MALAT1 miRanda starBase2
1052 chr11 65268198 65268198 1 + G A rs7927113 65268208 + 65268188 65268228 41 AGACCAGCATGCCAGTGTGCCAAGGCCACAGGGAAAGCGAG AGACCAGCATACCAGTGTGCCAAGGCCACAGGGAAAGCGAG < 41bp 1 0.730660369557022 1 0.436343878507614 experiment 0.538679260885956 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268208 chr11:65268198 . . 0 11 hm5C_associated_SNPs_9330 0 0 1 3 65268189 65268211 lncRNA hsa-miR-1271-5p MALAT1 miRanda starBase2
1053 chr11 65268198 65268198 1 + G A rs7927113 65268208 + 65268188 65268228 41 AGACCAGCATGCCAGTGTGCCAAGGCCACAGGGAAAGCGAG AGACCAGCATACCAGTGTGCCAAGGCCACAGGGAAAGCGAG < 41bp 1 0.730660369557022 1 0.436343878507614 experiment 0.538679260885956 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268208 chr11:65268198 . . 0 11 hm5C_associated_SNPs_9330 0 0 1 3 65268189 65268211 lncRNA hsa-miR-96-5p MALAT1 miRanda starBase2
1054 chr11 65273622 65273622 1 + G A rs576087101 65273607 + 65273587 65273627 41 AGATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTT AGATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACAGGGTT < 41bp 1 0.416627019630363 1 0.471578925848007 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273607 chr11:65273622 . . 0 36 hm5C_associated_SNPs_9331 0 0 1 1 65273604 65273625 lncRNA hsa-miR-1247-5p MALAT1 miRanda starBase2
1055 chr11 65273622 65273622 1 + G A rs576087101 65273608 + 65273588 65273628 41 GATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTTC GATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACAGGGTTC < 41bp 1 0.604444893205852 1 0.48534032702446 experiment 0.791110213588297 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273608 chr11:65273622 . . 0 35 hm5C_associated_SNPs_9332 0 0 1 1 65273604 65273625 lncRNA hsa-miR-1247-5p MALAT1 miRanda starBase2
1056 chr11 67202573 67202573 1 + C G rs200313021 67202555 + 67202535 67202575 41 TCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCCCCTC TCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCCCGTC < 41bp 1 0.588004296643535 1 0.246205568313599 experiment 0.82399140671293 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202555 chr11:67202573 nonsynonymous SNV 0.505 1 39 hm5C_associated_SNPs_9422 0 0 1 1 67202568 67202589 mRNA hsa-miR-184 RPS6KB2 miRanda miRanda
1057 chr11 73575499 73575499 1 + G A rs1051090 73575502 + 73575482 73575522 41 GTTAGAGTTCATCAGGAGACCCAACCCTTAGATTTCATAAG GTTAGAGTTCATCAGGAAACCCAACCCTTAGATTTCATAAG < 41bp 1 0.202640642397866 1 0.377339839935303 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPL48 ENSG00000175581 UTR3 Human protein_coding chr11:73575502 chr11:73575499 . . 0 18 hm5C_associated_SNPs_9486 0 0 1 1 73575489 73575510 mRNA hsa-miR-296-3p MRPL48 miRanda miRanda
1058 chr11 73575504 73575504 1 + A G rs12262 73575502 + 73575482 73575522 41 GTTAGAGTTCATCAGGAGACCCAACCCTTAGATTTCATAAG GTTAGAGTTCATCAGGAGACCCGACCCTTAGATTTCATAAG < 41bp 1 0.231883954994005 1 0.235652834177017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPL48 ENSG00000175581 UTR3 Human protein_coding chr11:73575502 chr11:73575504 . . 0 23 hm5C_associated_SNPs_9487 0 0 1 1 73575489 73575510 mRNA hsa-miR-296-3p MRPL48 miRanda miRanda
1059 chr11 74353161 74353161 1 + C T rs557954215 74353176 + 74353156 74353196 41 TATGTCGTAAGTGATGCAATCAGCTGTCTGCTTTTTAAGGT TATGTTGTAAGTGATGCAATCAGCTGTCTGCTTTTTAAGGT < 41bp 1 0.676119682154945 1 0.528456628322601 experiment 0.647760635690109 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD3 ENSG00000077514 UTR3 Human protein_coding chr11:74353176 chr11:74353161 . . 0 6 hm5C_associated_SNPs_9507 0 0 1 1 74353153 74353176 mRNA hsa-miR-32 POLD3 miRanda miRanda
1060 chr11 94865068 94865068 1 + G T rs533669 94865048 + 94865028 94865068 41 GTCTATTTATTCTTGGGTGGCCAGTTTTGAAACCTAAAAAG GTCTATTTATTCTTGGGTGGCCAGTTTTGAAACCTAAAAAT < 41bp 1 0.252245039137714 1 0.146006435155869 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ENDOD1 ENSG00000149218 UTR3 Human protein_coding chr11:94865048 chr11:94865068 . . 0 41 hm5C_associated_SNPs_9558 0 0 1 3 94865066 94865086 mRNA hsa-miR-129-5p ENDOD1 miRanda miRanda
1061 chr11 94865068 94865068 1 + G T rs533669 94865048 + 94865028 94865068 41 GTCTATTTATTCTTGGGTGGCCAGTTTTGAAACCTAAAAAG GTCTATTTATTCTTGGGTGGCCAGTTTTGAAACCTAAAAAT < 41bp 1 0.252245039137714 1 0.146006435155869 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ENDOD1 ENSG00000149218 UTR3 Human protein_coding chr11:94865048 chr11:94865068 . . 0 41 hm5C_associated_SNPs_9558 0 0 1 3 94865051 94865072 mRNA hsa-miR-204 ENDOD1 miRanda miRanda
1062 chr11 94865068 94865068 1 + G T rs533669 94865048 + 94865028 94865068 41 GTCTATTTATTCTTGGGTGGCCAGTTTTGAAACCTAAAAAG GTCTATTTATTCTTGGGTGGCCAGTTTTGAAACCTAAAAAT < 41bp 1 0.252245039137714 1 0.146006435155869 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ENDOD1 ENSG00000149218 UTR3 Human protein_coding chr11:94865048 chr11:94865068 . . 0 41 hm5C_associated_SNPs_9558 0 0 1 3 94865052 94865072 mRNA hsa-miR-211 ENDOD1 miRanda miRanda
1063 chr11 94865068 94865068 1 + G T rs533669 94865049 + 94865029 94865069 41 TCTATTTATTCTTGGGTGGCCAGTTTTGAAACCTAAAAAGG TCTATTTATTCTTGGGTGGCCAGTTTTGAAACCTAAAAATG < 41bp 1 0.244567614828189 1 0.233702749013901 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ENDOD1 ENSG00000149218 UTR3 Human protein_coding chr11:94865049 chr11:94865068 . . 0 40 hm5C_associated_SNPs_9559 0 0 1 3 94865066 94865086 mRNA hsa-miR-129-5p ENDOD1 miRanda miRanda
1064 chr11 94865068 94865068 1 + G T rs533669 94865049 + 94865029 94865069 41 TCTATTTATTCTTGGGTGGCCAGTTTTGAAACCTAAAAAGG TCTATTTATTCTTGGGTGGCCAGTTTTGAAACCTAAAAATG < 41bp 1 0.244567614828189 1 0.233702749013901 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ENDOD1 ENSG00000149218 UTR3 Human protein_coding chr11:94865049 chr11:94865068 . . 0 40 hm5C_associated_SNPs_9559 0 0 1 3 94865051 94865072 mRNA hsa-miR-204 ENDOD1 miRanda miRanda
1065 chr11 94865068 94865068 1 + G T rs533669 94865049 + 94865029 94865069 41 TCTATTTATTCTTGGGTGGCCAGTTTTGAAACCTAAAAAGG TCTATTTATTCTTGGGTGGCCAGTTTTGAAACCTAAAAATG < 41bp 1 0.244567614828189 1 0.233702749013901 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ENDOD1 ENSG00000149218 UTR3 Human protein_coding chr11:94865049 chr11:94865068 . . 0 40 hm5C_associated_SNPs_9559 0 0 1 3 94865052 94865072 mRNA hsa-miR-211 ENDOD1 miRanda miRanda
1066 chr11 107917087 107917087 1 + A G rs7117111 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTAAGCAGGCACAGGCAGTAAGTTCTACATGC < 41bp 1 0.37547778058855 1 0.351598083972931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917087 synonymous SNV . 0 17 hm5C_associated_SNPs_9563 0 0 1 1 107917074 107917093 mRNA hsa-miR-218 CUL5 miRanda miRanda
1067 chr11 107975265 107975265 1 + A G rs7112974 107975249 + 107975229 107975269 41 TCTGCCTTACCTTACAAAAACAACTATATTTTGCCAATCAC TCTGCCTTACCTTACAAAAACAACTATATTTTGCCAGTCAC < 41bp 1 0.293210344605605 1 0.338236212730408 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUL5 ENSG00000166266 UTR3 Human protein_coding chr11:107975249 chr11:107975265 . . 0 37 hm5C_associated_SNPs_9565 0 0 1 1 107975242 107975266 mRNA hsa-miR-182 CUL5 miRanda miRanda
1068 chr11 107976579 107976579 1 + G C rs188854772 107976573 + 107976553 107976593 41 AGATAGTAGGAAATGGAGTACAGAAAGGCATACAGTATTAT AGATAGTAGGAAATGGAGTACAGAAACGCATACAGTATTAT < 41bp 1 0.582580200896768 1 0.442966312170029 experiment 0.834839598206464 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CUL5 ENSG00000255467 ncRNA_intronic Human antisense chr11:107976573 chr11:107976579 . . 0 27 hm5C_associated_SNPs_9566 0 0 1 3 107976571 107976592 mRNA hsa-miR-200b CUL5 miRanda miRanda
1069 chr11 107976579 107976579 1 + G C rs188854772 107976573 + 107976553 107976593 41 AGATAGTAGGAAATGGAGTACAGAAAGGCATACAGTATTAT AGATAGTAGGAAATGGAGTACAGAAACGCATACAGTATTAT < 41bp 1 0.582580200896768 1 0.442966312170029 experiment 0.834839598206464 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CUL5 ENSG00000255467 ncRNA_intronic Human antisense chr11:107976573 chr11:107976579 . . 0 27 hm5C_associated_SNPs_9566 0 0 1 3 107976570 107976592 mRNA hsa-miR-200c CUL5 miRanda miRanda
1070 chr11 107976579 107976579 1 + G C rs188854772 107976573 + 107976553 107976593 41 AGATAGTAGGAAATGGAGTACAGAAAGGCATACAGTATTAT AGATAGTAGGAAATGGAGTACAGAAACGCATACAGTATTAT < 41bp 1 0.582580200896768 1 0.442966312170029 experiment 0.834839598206464 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CUL5 ENSG00000255467 ncRNA_intronic Human antisense chr11:107976573 chr11:107976579 . . 0 27 hm5C_associated_SNPs_9566 0 0 1 3 107976571 107976592 mRNA hsa-miR-429 CUL5 miRanda miRanda
1071 chr11 118471577 118471577 1 + G A rs79329602 118471576 + 118471556 118471596 41 TCTCTGCGCGCAAGGACCCTCGACTCACCCCCATGTTTCAG TCTCTGCGCGCAAGGACCCTCAACTCACCCCCATGTTTCAG < 41bp 1 0.470301801340722 1 0.159861385822296 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARCN1 ENSG00000095139 UTR3 Human protein_coding chr11:118471576 chr11:118471577 . . 0 22 hm5C_associated_SNPs_9617 0 0 1 1 118471574 118471595 mRNA hsa-miR-494 ARCN1 miRanda miRanda
1072 chr11 124616897 124616897 1 + G A rs554114488 124616901 + 124616881 124616921 41 CGCACTGTTGAGGGCAGCCTCTCCAGCTCTCTTGTTTATGC CGCACTGTTGAGGGCAACCTCTCCAGCTCTCTTGTTTATGC < 41bp 1 0.746804002279024 1 0.932327270507812 experiment 0.506391995441952 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRGN ENSG00000154146 UTR3 Human protein_coding chr11:124616901 chr11:124616897 . . 0 17 hm5C_associated_SNPs_9648 0 0 1 1 124616881 124616902 mRNA hsa-miR-485-5p NRGN miRanda miRanda
1073 chr11 125453890 125453890 1 + C T rs7094 125453884 + 125453864 125453904 41 GGAACACTTTGTTTTTCTCCCTGTGCCATTTACCCTTCCAC GGAACACTTTGTTTTTCTCCCTGTGCTATTTACCCTTCCAC < 41bp 1 0.389036417016503 1 0.0963094234466553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STT3A-AS1 ENSG00000254671 ncRNA_intronic Human antisense chr11:125453884 chr11:125453890 . . 0 27 hm5C_associated_SNPs_9653 0 0 1 1 125453872 125453893 mRNA hsa-miR-183 EI24 miRanda miRanda
1074 chr12 6619630 6619630 1 + A G rs141234350 6619642 + 6619622 6619662 41 GCATGTTCAGGGTATCAGGGCCAAGGGTCCTAAAGGACTTA GCATGTTCGGGGTATCAGGGCCAAGGGTCCTAAAGGACTTA < 41bp 1 0.126683358736989 1 0.280286192893982 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619642 chr12:6619630 . . 0 9 hm5C_associated_SNPs_9695 0 0 1 1 6619625 6619645 mRNA hsa-miR-328 SCARNA10 miRanda miRanda
1075 chr12 6619630 6619630 1 + A G rs141234350 6619643 + 6619623 6619663 41 CATGTTCAGGGTATCAGGGCCAAGGGTCCTAAAGGACTTAG CATGTTCGGGGTATCAGGGCCAAGGGTCCTAAAGGACTTAG < 41bp 1 0.591054060022223 1 0.740975439548492 experiment 0.817891879955555 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619643 chr12:6619630 . . 0 8 hm5C_associated_SNPs_9696 0 0 1 1 6619625 6619645 mRNA hsa-miR-328 SCARNA10 miRanda miRanda
1076 chr12 6647516 6647516 1 + T G rs552128740 6647536 + 6647516 6647556 41 TAAAGTACCCTGTGCTCAACCAGTTACTTGTCCTGTCTTAT GAAAGTACCCTGTGCTCAACCAGTTACTTGTCCTGTCTTAT < 41bp 1 0.281043781397402 1 0.134436339139938 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647536 chr12:6647516 . . 0 1 hm5C_associated_SNPs_9737 0 0 1 1 6647511 6647535 mRNA hsa-miR-96 GAPDH miRanda miRanda
1077 chr12 6979935 6979935 1 + C T rs540279409 6979919 + 6979899 6979939 41 TCAGAAGGCAGGAGTGCTGCCCTCTCCCATGGTGCCCGTGC TCAGAAGGCAGGAGTGCTGCCCTCTCCCATGGTGCCTGTGC < 41bp 1 0.154473098942695 1 0.0567590594291687 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TPI1 ENSG00000111669 UTR3 Human protein_coding chr12:6979919 chr12:6979935 . . 0 37 hm5C_associated_SNPs_9743 0 0 1 1 6979933 6979955 mRNA hsa-miR-300 TPI1 miRanda miRanda
1078 chr12 6979935 6979935 1 + C T rs540279409 6979922 + 6979902 6979942 41 GAAGGCAGGAGTGCTGCCCTCTCCCATGGTGCCCGTGCCTC GAAGGCAGGAGTGCTGCCCTCTCCCATGGTGCCTGTGCCTC < 41bp 1 0.586938580730958 1 0.849968194961548 experiment 0.826122838538084 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TPI1 ENSG00000111669 UTR3 Human protein_coding chr12:6979922 chr12:6979935 . . 0 34 hm5C_associated_SNPs_9744 0 0 1 1 6979933 6979955 mRNA hsa-miR-300 TPI1 miRanda miRanda
1079 chr12 16517110 16517110 1 + T C rs4149206 16517098 + 16517078 16517118 41 AATTATGAACTGGGGTAAACCCATTTTGAATATTAGCATTG AATTATGAACTGGGGTAAACCCATTTTGAATACTAGCATTG < 41bp 1 0.0701005228764093 1 0.360411882400513 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGST1 ENSG00000008394 UTR3 Human protein_coding chr12:16517098 chr12:16517110 . . 0 33 hm5C_associated_SNPs_9767 0 0 1 3 16517102 16517123 mRNA hsa-miR-96 MGST1 miRanda miRanda
1080 chr12 16517110 16517110 1 + T C rs4149206 16517098 + 16517078 16517118 41 AATTATGAACTGGGGTAAACCCATTTTGAATATTAGCATTG AATTATGAACTGGGGTAAACCCATTTTGAATACTAGCATTG < 41bp 1 0.0701005228764093 1 0.360411882400513 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGST1 ENSG00000008394 UTR3 Human protein_coding chr12:16517098 chr12:16517110 . . 0 33 hm5C_associated_SNPs_9767 0 0 1 3 16517100 16517123 mRNA hsa-miR-182 MGST1 miRanda miRanda
1081 chr12 16517110 16517110 1 + T C rs4149206 16517098 + 16517078 16517118 41 AATTATGAACTGGGGTAAACCCATTTTGAATATTAGCATTG AATTATGAACTGGGGTAAACCCATTTTGAATACTAGCATTG < 41bp 1 0.0701005228764093 1 0.360411882400513 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGST1 ENSG00000008394 UTR3 Human protein_coding chr12:16517098 chr12:16517110 . . 0 33 hm5C_associated_SNPs_9767 0 0 1 3 16517102 16517123 mRNA hsa-miR-1271 MGST1 miRanda miRanda
1082 chr12 48362412 48362412 1 + G C rs6823 48362431 + 48362411 48362451 41 TGGCAGCAGAGAGGGACCATCCAAATACCTAAGAGAAAACA TCGCAGCAGAGAGGGACCATCCAAATACCTAAGAGAAAACA < 41bp 1 0.681567547111285 1 0.500009477138519 experiment 0.636864905777431 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM106C ENSG00000134291 UTR3 Human protein_coding chr12:48362431 chr12:48362412 . . 0 2 hm5C_associated_SNPs_9792 0 0 1 1 48362408 48362430 mRNA hsa-miR-328 TMEM106C miRanda miRanda
1083 chr12 53854790 53854790 1 + A G rs557980143 53854793 + 53854773 53854813 41 ATTTTGAATTTCTTTTTACTCCAAAGAGTACAGGGGCTCAG ATTTTGAATTTCTTTTTGCTCCAAAGAGTACAGGGGCTCAG < 41bp 1 0.302221748504282 1 0.257339000701904 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCBP2 ENSG00000257379 ncRNA_intronic Human processed_transcript chr12:53854793 chr12:53854790 . . 0 18 hm5C_associated_SNPs_9849 0 0 1 1 53854786 53854807 mRNA hsa-miR-486-5p PCBP2 miRanda miRanda
1084 chr12 53854790 53854790 1 + A G rs557980143 53854794 + 53854774 53854814 41 TTTTGAATTTCTTTTTACTCCAAAGAGTACAGGGGCTCAGG TTTTGAATTTCTTTTTGCTCCAAAGAGTACAGGGGCTCAGG < 41bp 1 0.201492253775746 1 0.395569354295731 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCBP2 ENSG00000257379 ncRNA_intronic Human processed_transcript chr12:53854794 chr12:53854790 . . 0 17 hm5C_associated_SNPs_9850 0 0 1 1 53854786 53854807 mRNA hsa-miR-486-5p PCBP2 miRanda miRanda
1085 chr12 54678342 54678342 1 + C A rs537037310 54678327 + 54678307 54678347 41 CAACTTTATTCCATATTGTTCAACAGGAAACAAAGCTTAGC CAACTTTATTCCATATTGTTCAACAGGAAACAAAGATTAGC < 41bp 1 0.252524421838109 1 0.138254970312119 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HNRNPA1P10 ENSG00000258344 ncRNA_intronic Human sense_overlapping chr12:54678327 chr12:54678342 . . 0 36 hm5C_associated_SNPs_9853 0 0 1 2 54678341 54678364 mRNA hsa-miR-149 HNRNPA1 miRanda miRanda
1086 chr12 54678342 54678342 1 + C A rs537037310 54678327 + 54678307 54678347 41 CAACTTTATTCCATATTGTTCAACAGGAAACAAAGCTTAGC CAACTTTATTCCATATTGTTCAACAGGAAACAAAGATTAGC < 41bp 1 0.252524421838109 1 0.138254970312119 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HNRNPA1P10 ENSG00000258344 ncRNA_intronic Human sense_overlapping chr12:54678327 chr12:54678342 . . 0 36 hm5C_associated_SNPs_9853 0 0 1 2 54678341 54678364 mRNA hsa-miR-149 HNRPA1L-2 miRanda miRanda
1087 chr12 70747924 70747924 1 + G T rs374594056 70747908 + 70747888 70747928 41 TAAATTTGTAATTTGTTTTTCTCTAGTTTGAGCAGGGTCTG TAAATTTGTAATTTGTTTTTCTCTAGTTTGAGCAGGTTCTG < 41bp 1 0.40786686821349 1 0.539438366889954 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CNOT2 ENSG00000111596 UTR3 Human protein_coding chr12:70747908 chr12:70747924 . . 0 37 hm5C_associated_SNPs_9934 0 0 1 4 70747902 70747926 mRNA hsa-miR-10a CNOT2 miRanda miRanda
1088 chr12 70747924 70747924 1 + G T rs374594056 70747908 + 70747888 70747928 41 TAAATTTGTAATTTGTTTTTCTCTAGTTTGAGCAGGGTCTG TAAATTTGTAATTTGTTTTTCTCTAGTTTGAGCAGGTTCTG < 41bp 1 0.40786686821349 1 0.539438366889954 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CNOT2 ENSG00000111596 UTR3 Human protein_coding chr12:70747908 chr12:70747924 . . 0 37 hm5C_associated_SNPs_9934 0 0 1 4 70747904 70747926 mRNA hsa-miR-10b CNOT2 miRanda miRanda
1089 chr12 70747924 70747924 1 + G T rs374594056 70747908 + 70747888 70747928 41 TAAATTTGTAATTTGTTTTTCTCTAGTTTGAGCAGGGTCTG TAAATTTGTAATTTGTTTTTCTCTAGTTTGAGCAGGTTCTG < 41bp 1 0.40786686821349 1 0.539438366889954 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CNOT2 ENSG00000111596 UTR3 Human protein_coding chr12:70747908 chr12:70747924 . . 0 37 hm5C_associated_SNPs_9934 0 0 1 4 70747903 70747924 mRNA hsa-miR-370 CNOT2 miRanda miRanda
1090 chr12 70747924 70747924 1 + G T rs374594056 70747908 + 70747888 70747928 41 TAAATTTGTAATTTGTTTTTCTCTAGTTTGAGCAGGGTCTG TAAATTTGTAATTTGTTTTTCTCTAGTTTGAGCAGGTTCTG < 41bp 1 0.40786686821349 1 0.539438366889954 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CNOT2 ENSG00000111596 UTR3 Human protein_coding chr12:70747908 chr12:70747924 . . 0 37 hm5C_associated_SNPs_9934 0 0 1 4 70747907 70747927 mRNA hsa-miR-504 CNOT2 miRanda miRanda
1091 chr12 72180735 72180735 1 + A G rs17110278 72180746 + 72180726 72180766 41 GGCTTTATAAGAGATGGGTTCAGTGGTATGAGCAGAGGAAG GGCTTTATAGGAGATGGGTTCAGTGGTATGAGCAGAGGAAG < 41bp 1 0.786994326026788 1 0.500859081745148 experiment 0.426011347946424 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAB21 ENSG00000080371 UTR3 Human protein_coding chr12:72180746 chr12:72180735 . . 0 10 hm5C_associated_SNPs_9953 0 0 1 1 72180713 72180735 mRNA hsa-miR-340 RAB21 miRanda miRanda
1092 chr12 93881368 93881368 1 + A G rs146944959 93881384 + 93881364 93881404 41 AGGAAGGACCTATGATAGAACAACTTAGCAAAATGTTCTTT AGGAGGGACCTATGATAGAACAACTTAGCAAAATGTTCTTT < 41bp 1 0.55195725946939 1 0.15004974603653 experiment 0.896085481061219 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL42 ENSG00000198015 CDS Human protein_coding chr12:93881384 chr12:93881368 synonymous SNV . 0 5 hm5C_associated_SNPs_9956 0 0 1 1 93881368 93881390 mRNA hsa-miR-382 MRPL42 miRanda miRanda
1093 chr12 95681554 95681554 1 + C G rs12424550 95681551 + 95681531 95681571 41 AAATTAAAGTTGATTCAGCCCCACGTTCAAGCAAGCAACAA AAATTAAAGTTGATTCAGCCCCAGGTTCAAGCAAGCAACAA < 41bp 1 0.614465895274001 1 0.117347598075867 experiment 0.771068209451997 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95681551 chr12:95681554 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_9960 0 0 0 1 95681550 95681571 mRNA hsa-miR-218 VEZT miRanda miRanda
1094 chr12 95693943 95693943 1 + G A rs17344738 95693942 + 95693922 95693962 41 TCTTTTTTTTTATTTGAAGCCGTGTTGAAATCCTTGTCTCC TCTTTTTTTTTATTTGAAGCCATGTTGAAATCCTTGTCTCC < 41bp 1 0.207395760687704 1 0.408587992191315 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95693942 chr12:95693943 nonsynonymous SNV 0.963 2 22 hm5C_associated_SNPs_9961 0 0 1 3 95693927 95693950 mRNA hsa-miR-421 VEZT miRanda miRanda
1095 chr12 95693943 95693943 1 + G A rs17344738 95693942 + 95693922 95693962 41 TCTTTTTTTTTATTTGAAGCCGTGTTGAAATCCTTGTCTCC TCTTTTTTTTTATTTGAAGCCATGTTGAAATCCTTGTCTCC < 41bp 1 0.207395760687704 1 0.408587992191315 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95693942 chr12:95693943 nonsynonymous SNV 0.963 2 22 hm5C_associated_SNPs_9961 0 0 1 3 95693941 95693955 mRNA hsa-miR-876-5p VEZT miRanda miRanda
1096 chr12 95693943 95693943 1 + G A rs17344738 95693942 + 95693922 95693962 41 TCTTTTTTTTTATTTGAAGCCGTGTTGAAATCCTTGTCTCC TCTTTTTTTTTATTTGAAGCCATGTTGAAATCCTTGTCTCC < 41bp 1 0.207395760687704 1 0.408587992191315 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95693942 chr12:95693943 nonsynonymous SNV 0.963 2 22 hm5C_associated_SNPs_9961 0 0 1 3 95693934 95693955 mRNA hsa-miR-876-5p VEZT miRanda miRanda
1097 chr12 98941390 98941390 1 + G A rs144913822 98941402 + 98941382 98941422 41 GCAGGCCGGCCATTAGAACTCAGTGATTTCAGGATGGAGGA GCAGGCCGACCATTAGAACTCAGTGATTTCAGGATGGAGGA < 41bp 1 0.658522337902689 1 0.412046551704407 experiment 0.682955324194621 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMPO ENSG00000120802 CDS Human protein_coding chr12:98941402 chr12:98941390 synonymous SNV . 0 9 hm5C_associated_SNPs_9963 1 0 1 1 98941388 98941410 mRNA hsa-miR-200b TMPO miRanda miRanda
1098 chr12 98993624 98993624 1 + A G rs12297282 98993622 + 98993602 98993642 41 AATGACATGCATTTATGCTGCCATTTGTTACTATCAGGACT AATGACATGCATTTATGCTGCCGTTTGTTACTATCAGGACT < 41bp 1 0.0559233711244435 1 0.142075330018997 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993622 chr12:98993624 . . 0 23 hm5C_associated_SNPs_9964 0 0 1 7 98993604 98993624 mRNA hsa-miR-15a SNORA53 miRanda miRanda
1099 chr12 98993624 98993624 1 + A G rs12297282 98993622 + 98993602 98993642 41 AATGACATGCATTTATGCTGCCATTTGTTACTATCAGGACT AATGACATGCATTTATGCTGCCGTTTGTTACTATCAGGACT < 41bp 1 0.0559233711244435 1 0.142075330018997 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993622 chr12:98993624 . . 0 23 hm5C_associated_SNPs_9964 0 0 1 7 98993605 98993624 mRNA hsa-miR-16 SNORA53 miRanda miRanda
1100 chr12 98993624 98993624 1 + A G rs12297282 98993622 + 98993602 98993642 41 AATGACATGCATTTATGCTGCCATTTGTTACTATCAGGACT AATGACATGCATTTATGCTGCCGTTTGTTACTATCAGGACT < 41bp 1 0.0559233711244435 1 0.142075330018997 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993622 chr12:98993624 . . 0 23 hm5C_associated_SNPs_9964 0 0 1 7 98993598 98993624 mRNA hsa-miR-15b SNORA53 miRanda miRanda
1101 chr12 98993624 98993624 1 + A G rs12297282 98993622 + 98993602 98993642 41 AATGACATGCATTTATGCTGCCATTTGTTACTATCAGGACT AATGACATGCATTTATGCTGCCGTTTGTTACTATCAGGACT < 41bp 1 0.0559233711244435 1 0.142075330018997 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993622 chr12:98993624 . . 0 23 hm5C_associated_SNPs_9964 0 0 1 7 98993604 98993624 mRNA hsa-miR-195 SNORA53 miRanda miRanda
1102 chr12 98993624 98993624 1 + A G rs12297282 98993622 + 98993602 98993642 41 AATGACATGCATTTATGCTGCCATTTGTTACTATCAGGACT AATGACATGCATTTATGCTGCCGTTTGTTACTATCAGGACT < 41bp 1 0.0559233711244435 1 0.142075330018997 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993622 chr12:98993624 . . 0 23 hm5C_associated_SNPs_9964 0 0 1 7 98993600 98993624 mRNA hsa-miR-424 SNORA53 miRanda miRanda
1103 chr12 98993624 98993624 1 + A G rs12297282 98993622 + 98993602 98993642 41 AATGACATGCATTTATGCTGCCATTTGTTACTATCAGGACT AATGACATGCATTTATGCTGCCGTTTGTTACTATCAGGACT < 41bp 1 0.0559233711244435 1 0.142075330018997 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993622 chr12:98993624 . . 0 23 hm5C_associated_SNPs_9964 0 0 1 7 98993617 98993636 mRNA hsa-miR-410 SNORA53 miRanda miRanda
1104 chr12 98993624 98993624 1 + A G rs12297282 98993622 + 98993602 98993642 41 AATGACATGCATTTATGCTGCCATTTGTTACTATCAGGACT AATGACATGCATTTATGCTGCCGTTTGTTACTATCAGGACT < 41bp 1 0.0559233711244435 1 0.142075330018997 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993622 chr12:98993624 . . 0 23 hm5C_associated_SNPs_9964 0 0 1 7 98993599 98993624 mRNA hsa-miR-497 SNORA53 miRanda miRanda
1105 chr12 98993624 98993624 1 + A G rs12297282 98993641 + 98993621 98993661 41 GCCATTTGTTACTATCAGGACTCGACTCGTGTGCGGACATT GCCGTTTGTTACTATCAGGACTCGACTCGTGTGCGGACATT < 41bp 1 0.620136878511732 1 0.426465153694153 experiment 0.759726242976535 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993641 chr12:98993624 . . 0 4 hm5C_associated_SNPs_9965 0 0 1 7 98993604 98993624 mRNA hsa-miR-15a SNORA53 miRanda miRanda
1106 chr12 98993624 98993624 1 + A G rs12297282 98993641 + 98993621 98993661 41 GCCATTTGTTACTATCAGGACTCGACTCGTGTGCGGACATT GCCGTTTGTTACTATCAGGACTCGACTCGTGTGCGGACATT < 41bp 1 0.620136878511732 1 0.426465153694153 experiment 0.759726242976535 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993641 chr12:98993624 . . 0 4 hm5C_associated_SNPs_9965 0 0 1 7 98993605 98993624 mRNA hsa-miR-16 SNORA53 miRanda miRanda
1107 chr12 98993624 98993624 1 + A G rs12297282 98993641 + 98993621 98993661 41 GCCATTTGTTACTATCAGGACTCGACTCGTGTGCGGACATT GCCGTTTGTTACTATCAGGACTCGACTCGTGTGCGGACATT < 41bp 1 0.620136878511732 1 0.426465153694153 experiment 0.759726242976535 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993641 chr12:98993624 . . 0 4 hm5C_associated_SNPs_9965 0 0 1 7 98993598 98993624 mRNA hsa-miR-15b SNORA53 miRanda miRanda
1108 chr12 98993624 98993624 1 + A G rs12297282 98993641 + 98993621 98993661 41 GCCATTTGTTACTATCAGGACTCGACTCGTGTGCGGACATT GCCGTTTGTTACTATCAGGACTCGACTCGTGTGCGGACATT < 41bp 1 0.620136878511732 1 0.426465153694153 experiment 0.759726242976535 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993641 chr12:98993624 . . 0 4 hm5C_associated_SNPs_9965 0 0 1 7 98993604 98993624 mRNA hsa-miR-195 SNORA53 miRanda miRanda
1109 chr12 98993624 98993624 1 + A G rs12297282 98993641 + 98993621 98993661 41 GCCATTTGTTACTATCAGGACTCGACTCGTGTGCGGACATT GCCGTTTGTTACTATCAGGACTCGACTCGTGTGCGGACATT < 41bp 1 0.620136878511732 1 0.426465153694153 experiment 0.759726242976535 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993641 chr12:98993624 . . 0 4 hm5C_associated_SNPs_9965 0 0 1 7 98993600 98993624 mRNA hsa-miR-424 SNORA53 miRanda miRanda
1110 chr12 98993624 98993624 1 + A G rs12297282 98993641 + 98993621 98993661 41 GCCATTTGTTACTATCAGGACTCGACTCGTGTGCGGACATT GCCGTTTGTTACTATCAGGACTCGACTCGTGTGCGGACATT < 41bp 1 0.620136878511732 1 0.426465153694153 experiment 0.759726242976535 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993641 chr12:98993624 . . 0 4 hm5C_associated_SNPs_9965 0 0 1 7 98993617 98993636 mRNA hsa-miR-410 SNORA53 miRanda miRanda
1111 chr12 98993624 98993624 1 + A G rs12297282 98993641 + 98993621 98993661 41 GCCATTTGTTACTATCAGGACTCGACTCGTGTGCGGACATT GCCGTTTGTTACTATCAGGACTCGACTCGTGTGCGGACATT < 41bp 1 0.620136878511732 1 0.426465153694153 experiment 0.759726242976535 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993641 chr12:98993624 . . 0 4 hm5C_associated_SNPs_9965 0 0 1 7 98993599 98993624 mRNA hsa-miR-497 SNORA53 miRanda miRanda
1112 chr12 101780269 101780269 1 + C T rs3199856 101780249 + 101780229 101780269 41 ACTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTAC ACTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTAT < 41bp 1 0.346998571582847 1 0.103716284036636 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 UTR3 Human protein_coding chr12:101780249 chr12:101780269 . . 0 41 hm5C_associated_SNPs_9980 0 0 0 2 101780251 101780276 mRNA hsa-miR-10a UTP20 miRanda miRanda
1113 chr12 101780269 101780269 1 + C T rs3199856 101780249 + 101780229 101780269 41 ACTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTAC ACTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTAT < 41bp 1 0.346998571582847 1 0.103716284036636 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 UTR3 Human protein_coding chr12:101780249 chr12:101780269 . . 0 41 hm5C_associated_SNPs_9980 0 0 0 2 101780251 101780276 mRNA hsa-miR-10b UTP20 miRanda miRanda
1114 chr12 101780269 101780269 1 + C T rs3199856 101780251 + 101780231 101780271 41 TGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAG TGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTATAG < 41bp 1 0.384021243510172 1 0.130648493766785 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 UTR3 Human protein_coding chr12:101780251 chr12:101780269 . . 0 39 hm5C_associated_SNPs_9981 0 0 0 2 101780251 101780276 mRNA hsa-miR-10a UTP20 miRanda miRanda
1115 chr12 101780269 101780269 1 + C T rs3199856 101780251 + 101780231 101780271 41 TGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAG TGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTATAG < 41bp 1 0.384021243510172 1 0.130648493766785 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 UTR3 Human protein_coding chr12:101780251 chr12:101780269 . . 0 39 hm5C_associated_SNPs_9981 0 0 0 2 101780251 101780276 mRNA hsa-miR-10b UTP20 miRanda miRanda
1116 chr12 101780269 101780269 1 + C T rs3199856 101780252 + 101780232 101780272 41 GATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGG GATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTATAGG < 41bp 1 0.416958274490757 1 0.45288360118866 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 UTR3 Human protein_coding chr12:101780252 chr12:101780269 . . 0 38 hm5C_associated_SNPs_9982 0 0 0 2 101780251 101780276 mRNA hsa-miR-10a UTP20 miRanda miRanda
1117 chr12 101780269 101780269 1 + C T rs3199856 101780252 + 101780232 101780272 41 GATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGG GATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTATAGG < 41bp 1 0.416958274490757 1 0.45288360118866 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 UTR3 Human protein_coding chr12:101780252 chr12:101780269 . . 0 38 hm5C_associated_SNPs_9982 0 0 0 2 101780251 101780276 mRNA hsa-miR-10b UTP20 miRanda miRanda
1118 chr12 101780269 101780269 1 + C T rs3199856 101780253 + 101780233 101780273 41 ATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGT ATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTATAGGT < 41bp 1 0.59478045031349 1 0.502937853336334 experiment 0.81043909937302 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 UTR3 Human protein_coding chr12:101780253 chr12:101780269 . . 0 37 hm5C_associated_SNPs_9983 0 0 0 2 101780251 101780276 mRNA hsa-miR-10a UTP20 miRanda miRanda
1119 chr12 101780269 101780269 1 + C T rs3199856 101780253 + 101780233 101780273 41 ATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGT ATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTATAGGT < 41bp 1 0.59478045031349 1 0.502937853336334 experiment 0.81043909937302 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 UTR3 Human protein_coding chr12:101780253 chr12:101780269 . . 0 37 hm5C_associated_SNPs_9983 0 0 0 2 101780251 101780276 mRNA hsa-miR-10b UTP20 miRanda miRanda
1120 chr12 101780269 101780269 1 + C T rs3199856 101780260 + 101780240 101780280 41 TGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCC TGCCTCGGCCTCCCAAAGTGCTGGGATTATAGGTGTGAGCC < 41bp 1 0.755782258024857 1 0.551861226558685 experiment 0.488435483950287 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 UTR3 Human protein_coding chr12:101780260 chr12:101780269 . . 0 30 hm5C_associated_SNPs_9984 0 0 0 2 101780251 101780276 mRNA hsa-miR-10a UTP20 miRanda miRanda
1121 chr12 101780269 101780269 1 + C T rs3199856 101780260 + 101780240 101780280 41 TGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCC TGCCTCGGCCTCCCAAAGTGCTGGGATTATAGGTGTGAGCC < 41bp 1 0.755782258024857 1 0.551861226558685 experiment 0.488435483950287 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 UTR3 Human protein_coding chr12:101780260 chr12:101780269 . . 0 30 hm5C_associated_SNPs_9984 0 0 0 2 101780251 101780276 mRNA hsa-miR-10b UTP20 miRanda miRanda
1122 chr12 112579920 112579920 1 + A G rs61743643 112579938 + 112579918 112579958 41 GAATAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAAGAGA GAGTAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAAGAGA < 41bp 1 0.292087766993461 1 0.429946810007095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112579938 chr12:112579920 nonsynonymous SNV 0.895 0 3 hm5C_associated_SNPs_10045 0 0 1 1 112579910 112579930 mRNA hsa-miR-328 TRAFD1 miRanda miRanda
1123 chr12 112579945 112579945 1 + G A rs61740854 112579938 + 112579918 112579958 41 GAATAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAAGAGA GAATAGAGGCCAACAGCCCCCCAAAGAAGGTGGTGAAGAGA < 41bp 1 0.264796631311866 1 0.351034134626389 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112579938 chr12:112579945 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_10046 0 0 0 1 112579933 112579954 mRNA hsa-miR-197 TRAFD1 miRanda miRanda
1124 chr12 124243364 124243364 1 + T C rs146660715 124243354 + 124243334 124243374 41 GCTGGGATTACAGGCGTGAGCCACCATGCCTGGCCAAAATA GCTGGGATTACAGGCGTGAGCCACCATGCCCGGCCAAAATA < 41bp 1 0.307310964933588 1 0.176341652870178 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0A2 ENSG00000185344 UTR3 Human protein_coding chr12:124243354 chr12:124243364 . . 0 31 hm5C_associated_SNPs_10134 1 0 0 1 124243358 124243379 mRNA hsa-miR-448 ATP6V0A2 miRanda miRanda
1125 chr12 124243364 124243364 1 + T C rs146660715 124243358 + 124243338 124243378 41 GGATTACAGGCGTGAGCCACCATGCCTGGCCAAAATATGCA GGATTACAGGCGTGAGCCACCATGCCCGGCCAAAATATGCA < 41bp 1 0.189874300579575 1 0.411545813083649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0A2 ENSG00000185344 UTR3 Human protein_coding chr12:124243358 chr12:124243364 . . 0 27 hm5C_associated_SNPs_10135 1 0 0 1 124243358 124243379 mRNA hsa-miR-448 ATP6V0A2 miRanda miRanda
1126 chr13 24877225 24877225 1 + C T rs183812171 24877211 + 24877191 24877231 41 TAAAGCGAGTGATTAGGCAGCAGCTGAAGCCACCCCTGCTG TAAAGCGAGTGATTAGGCAGCAGCTGAAGCCACCTCTGCTG < 41bp 1 0.370786507230105 1 0.422056406736374 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPATA13 ENSG00000182957 UTR3 Human protein_coding chr13:24877211 chr13:24877225 . . 0 35 hm5C_associated_SNPs_10245 0 0 0 1 24877211 24877232 mRNA hsa-miR-214 SPATA13 miRanda miRanda
1127 chr13 24877851 24877851 1 + G A rs56198152 24877871 + 24877851 24877891 41 GTGGCCAATATGGCAAAGCCCAGTCTCTACTAATAATACAA ATGGCCAATATGGCAAAGCCCAGTCTCTACTAATAATACAA < 41bp 1 0.0394709415312972 1 0.0335533320903778 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPATA13 ENSG00000182957 UTR3 Human protein_coding chr13:24877871 chr13:24877851 . . 0 1 hm5C_associated_SNPs_10246 0 0 0 1 24877835 24877860 mRNA hsa-miR-25 SPATA13 miRanda miRanda
1128 chr13 27829212 27829212 1 + G A rs140626344 27829203 + 27829183 27829223 41 AATGTATCTTGGCACTCGAGCTTAATGATGACTGTTTTTTT AATGTATCTTGGCACTCGAGCTTAATGATAACTGTTTTTTT < 41bp 1 0.160791792754384 1 0.167199432849884 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD102 ENSG00000207500 ncRNA_exonic Human snoRNA chr13:27829203 chr13:27829212 . . 0 30 hm5C_associated_SNPs_10247 0 0 1 2 27829201 27829219 mRNA hsa-miR-212 SNORD102 miRanda miRanda
1129 chr13 27829212 27829212 1 + G A rs140626344 27829203 + 27829183 27829223 41 AATGTATCTTGGCACTCGAGCTTAATGATGACTGTTTTTTT AATGTATCTTGGCACTCGAGCTTAATGATAACTGTTTTTTT < 41bp 1 0.160791792754384 1 0.167199432849884 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD102 ENSG00000207500 ncRNA_exonic Human snoRNA chr13:27829203 chr13:27829212 . . 0 30 hm5C_associated_SNPs_10247 0 0 1 2 27829201 27829219 mRNA hsa-miR-132 SNORD102 miRanda miRanda
1130 chr13 27829212 27829212 1 + G A rs140626344 27829214 + 27829194 27829234 41 GCACTCGAGCTTAATGATGACTGTTTTTTTTGATTGCTTGA GCACTCGAGCTTAATGATAACTGTTTTTTTTGATTGCTTGA < 41bp 1 0.181305079971761 1 0.0567201673984528 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD102 ENSG00000207500 ncRNA_exonic Human snoRNA chr13:27829214 chr13:27829212 . . 0 19 hm5C_associated_SNPs_10248 0 0 1 2 27829201 27829219 mRNA hsa-miR-212 SNORD102 miRanda miRanda
1131 chr13 27829212 27829212 1 + G A rs140626344 27829214 + 27829194 27829234 41 GCACTCGAGCTTAATGATGACTGTTTTTTTTGATTGCTTGA GCACTCGAGCTTAATGATAACTGTTTTTTTTGATTGCTTGA < 41bp 1 0.181305079971761 1 0.0567201673984528 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD102 ENSG00000207500 ncRNA_exonic Human snoRNA chr13:27829214 chr13:27829212 . . 0 19 hm5C_associated_SNPs_10248 0 0 1 2 27829201 27829219 mRNA hsa-miR-132 SNORD102 miRanda miRanda
1132 chr13 41950104 41950104 1 + C T rs56724144 41950124 + 41950104 41950144 41 CATCAGTTTTAAAGTGTTAACTATATGTTAACAATATGGAG TATCAGTTTTAAAGTGTTAACTATATGTTAACAATATGGAG < 41bp 1 0.539011361770974 1 0.237141966819763 experiment 0.921977276458052 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAA16 ENSG00000172766 UTR3 Human protein_coding chr13:41950124 chr13:41950104 . . 0 1 hm5C_associated_SNPs_10259 0 0 1 1 41950086 41950106 mRNA hsa-miR-218 NAA16 miRanda miRanda
1133 chr13 41950126 41950126 1 + A G rs73181107 41950124 + 41950104 41950144 41 CATCAGTTTTAAAGTGTTAACTATATGTTAACAATATGGAG CATCAGTTTTAAAGTGTTAACTGTATGTTAACAATATGGAG < 41bp 1 0.651739711579148 1 0.144104450941086 experiment 0.696520576841704 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAA16 ENSG00000172766 UTR3 Human protein_coding chr13:41950124 chr13:41950126 . . 0 23 hm5C_associated_SNPs_10260 0 0 1 1 41950123 41950145 mRNA hsa-miR-136 NAA16 miRanda miRanda
1134 chr13 48835585 48835585 1 + G A rs9332305 48835570 + 48835550 48835590 41 TTTTATATTTGAATTAGTAACTGTATGAAGTCATAGATAAT TTTTATATTTGAATTAGTAACTGTATGAAGTCATAAATAAT < 41bp 1 0.480951641735946 1 0.200155079364777 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITM2B ENSG00000136156 UTR3 Human protein_coding chr13:48835570 chr13:48835585 . . 0 36 hm5C_associated_SNPs_10264 0 0 1 4 48835583 48835606 mRNA hsa-miR-18a ITM2B miRanda miRanda
1135 chr13 48835585 48835585 1 + G A rs9332305 48835570 + 48835550 48835590 41 TTTTATATTTGAATTAGTAACTGTATGAAGTCATAGATAAT TTTTATATTTGAATTAGTAACTGTATGAAGTCATAAATAAT < 41bp 1 0.480951641735946 1 0.200155079364777 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITM2B ENSG00000136156 UTR3 Human protein_coding chr13:48835570 chr13:48835585 . . 0 36 hm5C_associated_SNPs_10264 0 0 1 4 48835579 48835600 mRNA hsa-miR-101 ITM2B miRanda miRanda
1136 chr13 48835585 48835585 1 + G A rs9332305 48835570 + 48835550 48835590 41 TTTTATATTTGAATTAGTAACTGTATGAAGTCATAGATAAT TTTTATATTTGAATTAGTAACTGTATGAAGTCATAAATAAT < 41bp 1 0.480951641735946 1 0.200155079364777 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITM2B ENSG00000136156 UTR3 Human protein_coding chr13:48835570 chr13:48835585 . . 0 36 hm5C_associated_SNPs_10264 0 0 1 4 48835583 48835606 mRNA hsa-miR-18b ITM2B miRanda miRanda
1137 chr13 48835585 48835585 1 + G A rs9332305 48835570 + 48835550 48835590 41 TTTTATATTTGAATTAGTAACTGTATGAAGTCATAGATAAT TTTTATATTTGAATTAGTAACTGTATGAAGTCATAAATAAT < 41bp 1 0.480951641735946 1 0.200155079364777 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITM2B ENSG00000136156 UTR3 Human protein_coding chr13:48835570 chr13:48835585 . . 0 36 hm5C_associated_SNPs_10264 0 0 1 4 48835580 48835603 mRNA hsa-miR-542-3p ITM2B miRanda miRanda
1138 chr13 100038233 100038233 1 + A G rs1058083 100038232 + 100038212 100038252 41 TTAATTTTGCTCAGAGTATCCAGAGTTAGCCACTAGGCTGC TTAATTTTGCTCAGAGTATCCGGAGTTAGCCACTAGGCTGC < 41bp 1 0.750841900130673 1 0.91400671005249 experiment 0.498316199738655 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBAC2 ENSG00000134882 UTR3 Human protein_coding chr13:100038232 chr13:100038233 . . 0 22 hm5C_associated_SNPs_10342 0 0 1 1 100038232 100038255 mRNA hsa-miR-615-3p UBAC2 miRanda miRanda
1139 chr13 107029640 107029640 1 + G T rs181638553 107029624 + 107029604 107029644 41 GATTTATGTTAAATTATCACCTTGACTACTGCTATAGAACG GATTTATGTTAAATTATCACCTTGACTACTGCTATATAACG < 41bp 1 0.32598894788329 1 0.395396798849106 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LINC00460 ENSG00000233532 ncRNA_exonic Human lincRNA chr13:107029624 chr13:107029640 . . 0 37 hm5C_associated_SNPs_10346 0 0 0 1 107029627 107029651 mRNA hsa-miR-543 LOC728192 miRanda miRanda
1140 chr14 45580129 45580129 1 + A G rs75940101 45580111 + 45580091 45580131 41 ACTGTGATGAAAGATTTGGTCTGTATGTAATAGATTTTATT ACTGTGATGAAAGATTTGGTCTGTATGTAATAGATTTTGTT < 41bp 1 0.335684265429817 1 0.14521461725235 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD127 ENSG00000239043 ncRNA_exonic Human snoRNA chr14:45580111 chr14:45580129 . . 0 39 hm5C_associated_SNPs_10518 0 0 1 2 45580114 45580136 mRNA hsa-miR-374a SNORD127 miRanda miRanda
1141 chr14 45580129 45580129 1 + A G rs75940101 45580111 + 45580091 45580131 41 ACTGTGATGAAAGATTTGGTCTGTATGTAATAGATTTTATT ACTGTGATGAAAGATTTGGTCTGTATGTAATAGATTTTGTT < 41bp 1 0.335684265429817 1 0.14521461725235 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD127 ENSG00000239043 ncRNA_exonic Human snoRNA chr14:45580111 chr14:45580129 . . 0 39 hm5C_associated_SNPs_10518 0 0 1 2 45580114 45580136 mRNA hsa-miR-374b SNORD127 miRanda miRanda
1142 chr14 55255823 55255823 1 + C T rs184097143 55255817 + 55255797 55255837 41 GATTTTGTGAGAGCGTAGGTCATCCTCGTAAACATATCAGT GATTTTGTGAGAGCGTAGGTCATCCTTGTAAACATATCAGT < 41bp 1 0.0669674578894022 1 0.0400213897228241 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMD4A ENSG00000020577 UTR3 Human protein_coding chr14:55255817 chr14:55255823 . . 0 27 hm5C_associated_SNPs_10540 0 0 1 2 55255814 55255835 mRNA hsa-miR-190 SAMD4A miRanda miRanda
1143 chr14 55255823 55255823 1 + C T rs184097143 55255817 + 55255797 55255837 41 GATTTTGTGAGAGCGTAGGTCATCCTCGTAAACATATCAGT GATTTTGTGAGAGCGTAGGTCATCCTTGTAAACATATCAGT < 41bp 1 0.0669674578894022 1 0.0400213897228241 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMD4A ENSG00000020577 UTR3 Human protein_coding chr14:55255817 chr14:55255823 . . 0 27 hm5C_associated_SNPs_10540 0 0 1 2 55255815 55255835 mRNA hsa-miR-190b SAMD4A miRanda miRanda
1144 chr14 56150858 56150858 1 + G A rs377030594 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGACATTGTATTATATTTTGCCAA < 41bp 1 0.17037040424426 1 0.114988327026367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150858 . . 0 20 hm5C_associated_SNPs_10543 0 0 1 12 56150858 56150880 mRNA hsa-miR-96 KTN1 miRanda miRanda
1145 chr14 56150858 56150858 1 + G A rs377030594 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGACATTGTATTATATTTTGCCAA < 41bp 1 0.17037040424426 1 0.114988327026367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150858 . . 0 20 hm5C_associated_SNPs_10543 0 0 1 12 56150858 56150880 mRNA hsa-miR-182 KTN1 miRanda miRanda
1146 chr14 56150858 56150858 1 + G A rs377030594 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGACATTGTATTATATTTTGCCAA < 41bp 1 0.17037040424426 1 0.114988327026367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150858 . . 0 20 hm5C_associated_SNPs_10543 0 0 1 12 56150840 56150861 mRNA hsa-miR-204 KTN1 miRanda miRanda
1147 chr14 56150858 56150858 1 + G A rs377030594 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGACATTGTATTATATTTTGCCAA < 41bp 1 0.17037040424426 1 0.114988327026367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150858 . . 0 20 hm5C_associated_SNPs_10543 0 0 1 12 56150840 56150861 mRNA hsa-miR-211 KTN1 miRanda miRanda
1148 chr14 56150858 56150858 1 + G A rs377030594 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGACATTGTATTATATTTTGCCAA < 41bp 1 0.17037040424426 1 0.114988327026367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150858 . . 0 20 hm5C_associated_SNPs_10543 0 0 1 12 56150840 56150862 mRNA hsa-miR-135a KTN1 miRanda miRanda
1149 chr14 56150858 56150858 1 + G A rs377030594 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGACATTGTATTATATTTTGCCAA < 41bp 1 0.17037040424426 1 0.114988327026367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150858 . . 0 20 hm5C_associated_SNPs_10543 0 0 1 12 56150842 56150863 mRNA hsa-miR-365 KTN1 miRanda miRanda
1150 chr14 56150858 56150858 1 + G A rs377030594 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGACATTGTATTATATTTTGCCAA < 41bp 1 0.17037040424426 1 0.114988327026367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150858 . . 0 20 hm5C_associated_SNPs_10543 0 0 1 12 56150848 56150871 mRNA hsa-miR-374a KTN1 miRanda miRanda
1151 chr14 56150858 56150858 1 + G A rs377030594 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGACATTGTATTATATTTTGCCAA < 41bp 1 0.17037040424426 1 0.114988327026367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150858 . . 0 20 hm5C_associated_SNPs_10543 0 0 1 12 56150846 56150867 mRNA hsa-miR-381 KTN1 miRanda miRanda
1152 chr14 56150858 56150858 1 + G A rs377030594 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGACATTGTATTATATTTTGCCAA < 41bp 1 0.17037040424426 1 0.114988327026367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150858 . . 0 20 hm5C_associated_SNPs_10543 0 0 1 12 56150840 56150862 mRNA hsa-miR-135b KTN1 miRanda miRanda
1153 chr14 56150858 56150858 1 + G A rs377030594 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGACATTGTATTATATTTTGCCAA < 41bp 1 0.17037040424426 1 0.114988327026367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150858 . . 0 20 hm5C_associated_SNPs_10543 0 0 1 12 56150854 56150872 mRNA hsa-miR-410 KTN1 miRanda miRanda
1154 chr14 56150858 56150858 1 + G A rs377030594 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGACATTGTATTATATTTTGCCAA < 41bp 1 0.17037040424426 1 0.114988327026367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150858 . . 0 20 hm5C_associated_SNPs_10543 0 0 1 12 56150846 56150867 mRNA hsa-miR-300 KTN1 miRanda miRanda
1155 chr14 56150858 56150858 1 + G A rs377030594 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGACATTGTATTATATTTTGCCAA < 41bp 1 0.17037040424426 1 0.114988327026367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150858 . . 0 20 hm5C_associated_SNPs_10543 0 0 1 12 56150852 56150871 mRNA hsa-miR-374b KTN1 miRanda miRanda
1156 chr14 56150861 56150861 1 + T C rs571976451 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGGCACTGTATTATATTTTGCCAA < 41bp 1 0.33483950945778 1 0.129716724157333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150861 . . 0 23 hm5C_associated_SNPs_10544 0 0 1 14 56150859 56150878 mRNA hsa-miR-31 KTN1 miRanda miRanda
1157 chr14 56150861 56150861 1 + T C rs571976451 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGGCACTGTATTATATTTTGCCAA < 41bp 1 0.33483950945778 1 0.129716724157333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150861 . . 0 23 hm5C_associated_SNPs_10544 0 0 1 14 56150858 56150880 mRNA hsa-miR-96 KTN1 miRanda miRanda
1158 chr14 56150861 56150861 1 + T C rs571976451 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGGCACTGTATTATATTTTGCCAA < 41bp 1 0.33483950945778 1 0.129716724157333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150861 . . 0 23 hm5C_associated_SNPs_10544 0 0 1 14 56150858 56150880 mRNA hsa-miR-182 KTN1 miRanda miRanda
1159 chr14 56150861 56150861 1 + T C rs571976451 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGGCACTGTATTATATTTTGCCAA < 41bp 1 0.33483950945778 1 0.129716724157333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150861 . . 0 23 hm5C_associated_SNPs_10544 0 0 1 14 56150840 56150861 mRNA hsa-miR-204 KTN1 miRanda miRanda
1160 chr14 56150861 56150861 1 + T C rs571976451 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGGCACTGTATTATATTTTGCCAA < 41bp 1 0.33483950945778 1 0.129716724157333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150861 . . 0 23 hm5C_associated_SNPs_10544 0 0 1 14 56150840 56150861 mRNA hsa-miR-211 KTN1 miRanda miRanda
1161 chr14 56150861 56150861 1 + T C rs571976451 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGGCACTGTATTATATTTTGCCAA < 41bp 1 0.33483950945778 1 0.129716724157333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150861 . . 0 23 hm5C_associated_SNPs_10544 0 0 1 14 56150840 56150862 mRNA hsa-miR-135a KTN1 miRanda miRanda
1162 chr14 56150861 56150861 1 + T C rs571976451 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGGCACTGTATTATATTTTGCCAA < 41bp 1 0.33483950945778 1 0.129716724157333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150861 . . 0 23 hm5C_associated_SNPs_10544 0 0 1 14 56150842 56150863 mRNA hsa-miR-365 KTN1 miRanda miRanda
1163 chr14 56150861 56150861 1 + T C rs571976451 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGGCACTGTATTATATTTTGCCAA < 41bp 1 0.33483950945778 1 0.129716724157333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150861 . . 0 23 hm5C_associated_SNPs_10544 0 0 1 14 56150848 56150871 mRNA hsa-miR-374a KTN1 miRanda miRanda
1164 chr14 56150861 56150861 1 + T C rs571976451 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGGCACTGTATTATATTTTGCCAA < 41bp 1 0.33483950945778 1 0.129716724157333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150861 . . 0 23 hm5C_associated_SNPs_10544 0 0 1 14 56150846 56150867 mRNA hsa-miR-381 KTN1 miRanda miRanda
1165 chr14 56150861 56150861 1 + T C rs571976451 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGGCACTGTATTATATTTTGCCAA < 41bp 1 0.33483950945778 1 0.129716724157333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150861 . . 0 23 hm5C_associated_SNPs_10544 0 0 1 14 56150840 56150862 mRNA hsa-miR-135b KTN1 miRanda miRanda
1166 chr14 56150861 56150861 1 + T C rs571976451 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGGCACTGTATTATATTTTGCCAA < 41bp 1 0.33483950945778 1 0.129716724157333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150861 . . 0 23 hm5C_associated_SNPs_10544 0 0 1 14 56150854 56150872 mRNA hsa-miR-410 KTN1 miRanda miRanda
1167 chr14 56150861 56150861 1 + T C rs571976451 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGGCACTGTATTATATTTTGCCAA < 41bp 1 0.33483950945778 1 0.129716724157333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150861 . . 0 23 hm5C_associated_SNPs_10544 0 0 1 14 56150859 56150880 mRNA hsa-miR-1271 KTN1 miRanda miRanda
1168 chr14 56150861 56150861 1 + T C rs571976451 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGGCACTGTATTATATTTTGCCAA < 41bp 1 0.33483950945778 1 0.129716724157333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150861 . . 0 23 hm5C_associated_SNPs_10544 0 0 1 14 56150846 56150867 mRNA hsa-miR-300 KTN1 miRanda miRanda
1169 chr14 56150861 56150861 1 + T C rs571976451 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGGCACTGTATTATATTTTGCCAA < 41bp 1 0.33483950945778 1 0.129716724157333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150861 . . 0 23 hm5C_associated_SNPs_10544 0 0 1 14 56150852 56150871 mRNA hsa-miR-374b KTN1 miRanda miRanda
1170 chr14 60592491 60592491 1 + A C rs145320435 60592489 + 60592469 60592509 41 TGATGAAAAGTGGAAGGAAGCAATTTTACAAGAAAAGCCAT TGATGAAAAGTGGAAGGAAGCACTTTTACAAGAAAAGCCAT < 41bp 1 0.348595551509296 1 0.11495178937912 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60592489 chr14:60592491 nonsynonymous SNV 0.928 1 23 hm5C_associated_SNPs_10559 0 0 1 2 60592488 60592510 mRNA hsa-miR-135a C14orf135 miRanda miRanda
1171 chr14 60592491 60592491 1 + A C rs145320435 60592489 + 60592469 60592509 41 TGATGAAAAGTGGAAGGAAGCAATTTTACAAGAAAAGCCAT TGATGAAAAGTGGAAGGAAGCACTTTTACAAGAAAAGCCAT < 41bp 1 0.348595551509296 1 0.11495178937912 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60592489 chr14:60592491 nonsynonymous SNV 0.928 1 23 hm5C_associated_SNPs_10559 0 0 1 2 60592488 60592510 mRNA hsa-miR-135b C14orf135 miRanda miRanda
1172 chr14 64692544 64692544 1 + G A rs79269713 64692531 + 64692511 64692551 41 GTTTCCTGAAGAGCCAAGCACTTTGTGAATTCTGGTTTGTT GTTTCCTGAAGAGCCAAGCACTTTGTGAATTCTAGTTTGTT < 41bp 1 0.0705876071926535 1 0.0339835584163666 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNE2 ENSG00000054654 UTR3 Human protein_coding chr14:64692531 chr14:64692544 . . 0 34 hm5C_associated_SNPs_10570 0 0 1 1 64692530 64692552 mRNA hsa-miR-495 SYNE2 miRanda miRanda
1173 chr14 75359670 75359670 1 + G A rs2230237 75359687 + 75359667 75359707 41 ACAGCCTCCTTCTGGCAAACCTGGTAGGCTTCCAACTCCCA ACAACCTCCTTCTGGCAAACCTGGTAGGCTTCCAACTCCCA < 41bp 1 0.694365416993599 1 0.0704642534255981 experiment 0.611269166012802 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DLST ENSG00000119689 CDS Human protein_coding chr14:75359687 chr14:75359670 synonymous SNV . 0 4 hm5C_associated_SNPs_10606 0 0 1 1 75359654 75359675 mRNA hsa-miR-485-5p DLST miRanda miRanda
1174 chr14 90433762 90433762 1 + T C rs148474327 90433764 + 90433744 90433784 41 AAACAGTATCCACCAGAGTTCAGGTGAGTTCCTCAGGGTGA AAACAGTATCCACCAGAGCTCAGGTGAGTTCCTCAGGGTGA < 41bp 1 0.617412904782201 1 0.703882336616516 experiment 0.765174190435599 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TDP1 ENSG00000042088 CDS Human protein_coding chr14:90433764 chr14:90433762 nonsynonymous SNV 0.985 2 19 hm5C_associated_SNPs_10631 0 0 1 1 90433739 90433762 mRNA hsa-miR-330-5p TDP1 miRanda miRanda
1175 chr14 95059381 95059381 1 + A G rs7070 95059396 + 95059376 95059416 41 AGAGTATCAGTTGCAGGTGCCAATGACTAACTTTTTGAATT AGAGTGTCAGTTGCAGGTGCCAATGACTAACTTTTTGAATT < 41bp 1 0.251075492945406 1 0.177164703607559 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINA5 ENSG00000188488 UTR3 Human protein_coding chr14:95059396 chr14:95059381 . . 0 6 hm5C_associated_SNPs_10641 0 0 1 3 95059378 95059399 mRNA hsa-miR-96 SERPINA5 miRanda miRanda
1176 chr14 95059381 95059381 1 + A G rs7070 95059396 + 95059376 95059416 41 AGAGTATCAGTTGCAGGTGCCAATGACTAACTTTTTGAATT AGAGTGTCAGTTGCAGGTGCCAATGACTAACTTTTTGAATT < 41bp 1 0.251075492945406 1 0.177164703607559 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINA5 ENSG00000188488 UTR3 Human protein_coding chr14:95059396 chr14:95059381 . . 0 6 hm5C_associated_SNPs_10641 0 0 1 3 95059379 95059400 mRNA hsa-miR-367 SERPINA5 miRanda miRanda
1177 chr14 95059381 95059381 1 + A G rs7070 95059396 + 95059376 95059416 41 AGAGTATCAGTTGCAGGTGCCAATGACTAACTTTTTGAATT AGAGTGTCAGTTGCAGGTGCCAATGACTAACTTTTTGAATT < 41bp 1 0.251075492945406 1 0.177164703607559 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINA5 ENSG00000188488 UTR3 Human protein_coding chr14:95059396 chr14:95059381 . . 0 6 hm5C_associated_SNPs_10641 0 0 1 3 95059379 95059399 mRNA hsa-miR-1271 SERPINA5 miRanda miRanda
1178 chr14 95078780 95078780 1 + G A rs557831303 95078782 + 95078762 95078802 41 CTACATCCAGCTCCCTGAGGCAGGTAATCCATGATGTTTTA CTACATCCAGCTCCCTGAAGCAGGTAATCCATGATGTTTTA < 41bp 1 0.395601302428612 1 0.613594770431519 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control SERPINA3 ENSG00000196136 CDS Human protein_coding chr14:95078782 chr14:95078780 synonymous SNV . 0 19 hm5C_associated_SNPs_10642 0 0 1 1 95078774 95078784 mRNA hsa-miR-136 SERPINA3 miRanda miRanda
1179 chr14 96708793 96708793 1 + G A rs201676732 96708811 + 96708791 96708831 41 ACGTAACTGGGATATGTTTACTATAAGGAAAAGACACTGAG ACATAACTGGGATATGTTTACTATAAGGAAAAGACACTGAG < 41bp 1 0.382702394483616 1 0.136828243732452 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BDKRB2 ENSG00000168398 UTR3 Human protein_coding chr14:96708811 chr14:96708793 . . 0 3 hm5C_associated_SNPs_10644 0 0 0 6 96708791 96708812 mRNA hsa-miR-30a BDKRB2 miRanda miRanda
1180 chr14 96708793 96708793 1 + G A rs201676732 96708811 + 96708791 96708831 41 ACGTAACTGGGATATGTTTACTATAAGGAAAAGACACTGAG ACATAACTGGGATATGTTTACTATAAGGAAAAGACACTGAG < 41bp 1 0.382702394483616 1 0.136828243732452 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BDKRB2 ENSG00000168398 UTR3 Human protein_coding chr14:96708811 chr14:96708793 . . 0 3 hm5C_associated_SNPs_10644 0 0 0 6 96708790 96708812 mRNA hsa-miR-30c BDKRB2 miRanda miRanda
1181 chr14 96708793 96708793 1 + G A rs201676732 96708811 + 96708791 96708831 41 ACGTAACTGGGATATGTTTACTATAAGGAAAAGACACTGAG ACATAACTGGGATATGTTTACTATAAGGAAAAGACACTGAG < 41bp 1 0.382702394483616 1 0.136828243732452 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BDKRB2 ENSG00000168398 UTR3 Human protein_coding chr14:96708811 chr14:96708793 . . 0 3 hm5C_associated_SNPs_10644 0 0 0 6 96708791 96708812 mRNA hsa-miR-30d BDKRB2 miRanda miRanda
1182 chr14 96708793 96708793 1 + G A rs201676732 96708811 + 96708791 96708831 41 ACGTAACTGGGATATGTTTACTATAAGGAAAAGACACTGAG ACATAACTGGGATATGTTTACTATAAGGAAAAGACACTGAG < 41bp 1 0.382702394483616 1 0.136828243732452 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BDKRB2 ENSG00000168398 UTR3 Human protein_coding chr14:96708811 chr14:96708793 . . 0 3 hm5C_associated_SNPs_10644 0 0 0 6 96708791 96708812 mRNA hsa-miR-30b BDKRB2 miRanda miRanda
1183 chr14 96708793 96708793 1 + G A rs201676732 96708811 + 96708791 96708831 41 ACGTAACTGGGATATGTTTACTATAAGGAAAAGACACTGAG ACATAACTGGGATATGTTTACTATAAGGAAAAGACACTGAG < 41bp 1 0.382702394483616 1 0.136828243732452 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BDKRB2 ENSG00000168398 UTR3 Human protein_coding chr14:96708811 chr14:96708793 . . 0 3 hm5C_associated_SNPs_10644 0 0 0 6 96708791 96708812 mRNA hsa-miR-30e BDKRB2 miRanda miRanda
1184 chr14 96708793 96708793 1 + G A rs201676732 96708811 + 96708791 96708831 41 ACGTAACTGGGATATGTTTACTATAAGGAAAAGACACTGAG ACATAACTGGGATATGTTTACTATAAGGAAAAGACACTGAG < 41bp 1 0.382702394483616 1 0.136828243732452 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BDKRB2 ENSG00000168398 UTR3 Human protein_coding chr14:96708811 chr14:96708793 . . 0 3 hm5C_associated_SNPs_10644 0 0 0 6 96708788 96708809 mRNA hsa-miR-543 BDKRB2 miRanda miRanda
1185 chr14 102805187 102805187 1 + G A rs140733581 102805183 + 102805163 102805203 41 CATTAGGAATCACAGAATTCCTACGGAAGAAAGAAATACAC CATTAGGAATCACAGAATTCCTACAGAAGAAAGAAATACAC < 41bp 1 0.610905985541265 1 0.787894129753113 experiment 0.77818802891747 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102805183 chr14:102805187 nonsynonymous SNV 0.046 1 25 hm5C_associated_SNPs_10672 0 0 1 1 102805171 102805191 mRNA hsa-miR-384 ZNF839 miRanda miRanda
1186 chr14 103804276 103804276 1 + T C rs191428158 103804263 + 103804243 103804283 41 GCAAGAAAGTCTAACCTATTCCGGTGTTCTCTCTCCCATGA GCAAGAAAGTCTAACCTATTCCGGTGTTCTCTCCCCCATGA < 41bp 1 0.525758157513252 1 0.316789746284485 experiment 0.948483684973497 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804263 chr14:103804276 . . 0 34 hm5C_associated_SNPs_10678 0 0 1 1 103804257 103804279 mRNA hsa-miR-185 SNORA28 miRanda miRanda
1187 chr14 103804276 103804276 1 + T C rs191428158 103804264 + 103804244 103804284 41 CAAGAAAGTCTAACCTATTCCGGTGTTCTCTCTCCCATGAG CAAGAAAGTCTAACCTATTCCGGTGTTCTCTCCCCCATGAG < 41bp 1 0.371861766493273 1 0.703804314136505 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804264 chr14:103804276 . . 0 33 hm5C_associated_SNPs_10679 0 0 1 1 103804257 103804279 mRNA hsa-miR-185 SNORA28 miRanda miRanda
1188 chr14 103804276 103804276 1 + T C rs191428158 103804271 + 103804251 103804291 41 GTCTAACCTATTCCGGTGTTCTCTCTCCCATGAGACAAGCC GTCTAACCTATTCCGGTGTTCTCTCCCCCATGAGACAAGCC < 41bp 1 0.0638054073216403 1 0.0951546430587769 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804271 chr14:103804276 . . 0 26 hm5C_associated_SNPs_10680 0 0 1 1 103804257 103804279 mRNA hsa-miR-185 SNORA28 miRanda miRanda
1189 chr14 103804276 103804276 1 + T C rs191428158 103804277 + 103804257 103804297 41 CCTATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATA CCTATTCCGGTGTTCTCTCCCCCATGAGACAAGCCGTTATA < 41bp 1 0.179162752813158 1 0.229976505041122 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804277 chr14:103804276 . . 0 20 hm5C_associated_SNPs_10681 0 0 1 1 103804257 103804279 mRNA hsa-miR-185 SNORA28 miRanda miRanda
1190 chr14 103804276 103804276 1 + T C rs191428158 103804278 + 103804258 103804298 41 CTATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATAT CTATTCCGGTGTTCTCTCCCCCATGAGACAAGCCGTTATAT < 41bp 1 0.0922534396172968 1 0.317857027053833 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804278 chr14:103804276 . . 0 19 hm5C_associated_SNPs_10682 0 0 1 1 103804257 103804279 mRNA hsa-miR-185 SNORA28 miRanda miRanda
1191 chr14 103804276 103804276 1 + T C rs191428158 103804279 + 103804259 103804299 41 TATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATATA TATTCCGGTGTTCTCTCCCCCATGAGACAAGCCGTTATATA < 41bp 1 0.382967096268552 1 0.458262503147125 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804279 chr14:103804276 . . 0 18 hm5C_associated_SNPs_10683 0 0 1 1 103804257 103804279 mRNA hsa-miR-185 SNORA28 miRanda miRanda
1192 chr14 103804296 103804296 1 + T C rs552309514 103804277 + 103804257 103804297 41 CCTATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATA CCTATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTACA < 41bp 1 0.21546819430286 1 0.374909698963165 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804277 chr14:103804296 . . 0 40 hm5C_associated_SNPs_10684 0 0 1 1 103804279 103804299 mRNA hsa-miR-410 SNORA28 miRanda miRanda
1193 chr14 103804296 103804296 1 + T C rs552309514 103804278 + 103804258 103804298 41 CTATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATAT CTATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTACAT < 41bp 1 0.101256579314868 1 0.207501620054245 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804278 chr14:103804296 . . 0 39 hm5C_associated_SNPs_10685 0 0 1 1 103804279 103804299 mRNA hsa-miR-410 SNORA28 miRanda miRanda
1194 chr14 103804296 103804296 1 + T C rs552309514 103804279 + 103804259 103804299 41 TATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATATA TATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTACATA < 41bp 1 0.51675508300905 1 0.361443221569061 experiment 0.9664898339819 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804279 chr14:103804296 . . 0 38 hm5C_associated_SNPs_10686 0 0 1 1 103804279 103804299 mRNA hsa-miR-410 SNORA28 miRanda miRanda
1195 chr14 104167643 104167643 1 + G A rs184692165 104167636 + 104167616 104167656 41 GGAGGGCCCCTGGCCGGGAGCCGCAGCGCTCACTCATTTCT GGAGGGCCCCTGGCCGGGAGCCGCAGCACTCACTCATTTCT < 41bp 1 0.554812664562856 1 0.204432964324951 experiment 0.890374670874288 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167636 chr14:104167643 . . 0 28 hm5C_associated_SNPs_10700 0 0 0 1 104167636 104167658 mRNA hsa-miR-539 KLC1 miRanda miRanda
1196 chr14 104167643 104167643 1 + G A rs184692165 104167637 + 104167617 104167657 41 GAGGGCCCCTGGCCGGGAGCCGCAGCGCTCACTCATTTCTC GAGGGCCCCTGGCCGGGAGCCGCAGCACTCACTCATTTCTC < 41bp 1 0.56203317416295 1 0.630339324474335 experiment 0.8759336516741 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167637 chr14:104167643 . . 0 27 hm5C_associated_SNPs_10701 0 0 0 1 104167636 104167658 mRNA hsa-miR-539 KLC1 miRanda miRanda
1197 chr14 105936300 105936300 1 + C T rs147974087 105936285 + 105936265 105936305 41 CGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTT CGGCGGCGGATGAACTGGATCGACGCCCCGGATGATGTGTT < 41bp 1 0.489524495084624 1 0.48183286190033 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936285 chr14:105936300 synonymous SNV . 0 36 hm5C_associated_SNPs_10729 0 0 1 1 105936289 105936310 mRNA hsa-miR-30a MTA1 miRanda miRanda
1198 chr14 105936300 105936300 1 + C T rs147974087 105936315 + 105936295 105936335 41 GATGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGG GATGATGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGG < 41bp 1 0.57305496424729 1 0.565023005008698 experiment 0.853890071505419 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936315 chr14:105936300 synonymous SNV . 0 6 hm5C_associated_SNPs_10730 0 0 1 1 105936289 105936310 mRNA hsa-miR-30a MTA1 miRanda miRanda
1199 chr14 105936300 105936300 1 + C T rs147974087 105936317 + 105936297 105936337 41 TGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGGCC TGATGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGGCC < 41bp 1 0.659959565341124 1 0.708763301372528 experiment 0.680080869317752 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936317 chr14:105936300 synonymous SNV . 0 4 hm5C_associated_SNPs_10731 0 0 1 1 105936289 105936310 mRNA hsa-miR-30a MTA1 miRanda miRanda
1200 chr15 25213188 25213188 1 + C T rs556831171 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCTATA < 41bp 1 0.779061547855264 1 0.450905919075012 experiment 0.441876904289471 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG14 ENSG00000128739;ENSG00000214265;ENSG00000273173 UTR5;UTR3 Human other chr15:25213171 chr15:25213188 . . 0 38 hm5C_associated_SNPs_10748 0 0 1 4 25213185 25213191 mRNA hsa-miR-135a SNURF miRanda miRanda
1201 chr15 25213188 25213188 1 + C T rs556831171 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCTATA < 41bp 1 0.779061547855264 1 0.450905919075012 experiment 0.441876904289471 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG14 ENSG00000128739;ENSG00000214265;ENSG00000273173 UTR5;UTR3 Human other chr15:25213171 chr15:25213188 . . 0 38 hm5C_associated_SNPs_10748 0 0 1 4 25213167 25213191 mRNA hsa-miR-135a SNRPN miRanda miRanda
1202 chr15 25213188 25213188 1 + C T rs556831171 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCTATA < 41bp 1 0.779061547855264 1 0.450905919075012 experiment 0.441876904289471 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG14 ENSG00000128739;ENSG00000214265;ENSG00000273173 UTR5;UTR3 Human other chr15:25213171 chr15:25213188 . . 0 38 hm5C_associated_SNPs_10748 0 0 1 4 25213185 25213191 mRNA hsa-miR-135b SNURF miRanda miRanda
1203 chr15 25213188 25213188 1 + C T rs556831171 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCTATA < 41bp 1 0.779061547855264 1 0.450905919075012 experiment 0.441876904289471 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG14 ENSG00000128739;ENSG00000214265;ENSG00000273173 UTR5;UTR3 Human other chr15:25213171 chr15:25213188 . . 0 38 hm5C_associated_SNPs_10748 0 0 1 4 25213167 25213191 mRNA hsa-miR-135b SNRPN miRanda miRanda
1204 chr15 41571613 41571613 1 + C T rs147120669 41571595 + 41571575 41571615 41 ATTTCTTCACTAAAGGAGACCAAACTGTTCCTTGCGGTCTA ATTTCTTCACTAAAGGAGACCAAACTGTTCCTTGCGGTTTA < 41bp 1 0.194700138760234 1 0.106640517711639 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CHP1 ENSG00000187446 UTR3 Human protein_coding chr15:41571595 chr15:41571613 . . 0 39 hm5C_associated_SNPs_10811 0 0 1 1 41571610 41571632 mRNA hsa-miR-145 CHP miRanda miRanda
1205 chr15 43822459 43822459 1 + C G rs554112864 43822450 + 43822430 43822470 41 GCCCTCCCTTCCCCAAGGATCCACTCCCCCAGCTCCTTTAG GCCCTCCCTTCCCCAAGGATCCACTCCCCGAGCTCCTTTAG < 41bp 1 0.0632671976928074 1 0.0864318013191223 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1A ENSG00000166963 UTR3 Human protein_coding chr15:43822450 chr15:43822459 . . 0 30 hm5C_associated_SNPs_10835 0 0 0 2 43822446 43822467 mRNA hsa-miR-28-5p MAP1A miRanda miRanda
1206 chr15 43822459 43822459 1 + C G rs554112864 43822450 + 43822430 43822470 41 GCCCTCCCTTCCCCAAGGATCCACTCCCCCAGCTCCTTTAG GCCCTCCCTTCCCCAAGGATCCACTCCCCGAGCTCCTTTAG < 41bp 1 0.0632671976928074 1 0.0864318013191223 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1A ENSG00000166963 UTR3 Human protein_coding chr15:43822450 chr15:43822459 . . 0 30 hm5C_associated_SNPs_10835 0 0 0 2 43822445 43822467 mRNA hsa-miR-708 MAP1A miRanda miRanda
1207 chr15 57579223 57579223 1 + A C rs1045665 57579221 + 57579201 57579241 41 TGCTTTATTTCTAATAATAACCAAGACTTTTCAAGCTTCTA TGCTTTATTTCTAATAATAACCCAGACTTTTCAAGCTTCTA < 41bp 1 0.139749378381659 1 0.120644479990005 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCF12 ENSG00000140262 UTR3 Human protein_coding chr15:57579221 chr15:57579223 . . 0 23 hm5C_associated_SNPs_10869 0 0 1 2 57579203 57579224 mRNA hsa-miR-154 TCF12 miRanda miRanda
1208 chr15 57579223 57579223 1 + A C rs1045665 57579221 + 57579201 57579241 41 TGCTTTATTTCTAATAATAACCAAGACTTTTCAAGCTTCTA TGCTTTATTTCTAATAATAACCCAGACTTTTCAAGCTTCTA < 41bp 1 0.139749378381659 1 0.120644479990005 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCF12 ENSG00000140262 UTR3 Human protein_coding chr15:57579221 chr15:57579223 . . 0 23 hm5C_associated_SNPs_10869 0 0 1 2 57579208 57579228 mRNA hsa-miR-431 TCF12 miRanda miRanda
1209 chr15 57579223 57579223 1 + A C rs1045665 57579222 + 57579202 57579242 41 GCTTTATTTCTAATAATAACCAAGACTTTTCAAGCTTCTAG GCTTTATTTCTAATAATAACCCAGACTTTTCAAGCTTCTAG < 41bp 1 0.370107338810031 1 0.0929438769817352 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCF12 ENSG00000140262 UTR3 Human protein_coding chr15:57579222 chr15:57579223 . . 0 22 hm5C_associated_SNPs_10870 0 0 1 2 57579203 57579224 mRNA hsa-miR-154 TCF12 miRanda miRanda
1210 chr15 57579223 57579223 1 + A C rs1045665 57579222 + 57579202 57579242 41 GCTTTATTTCTAATAATAACCAAGACTTTTCAAGCTTCTAG GCTTTATTTCTAATAATAACCCAGACTTTTCAAGCTTCTAG < 41bp 1 0.370107338810031 1 0.0929438769817352 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCF12 ENSG00000140262 UTR3 Human protein_coding chr15:57579222 chr15:57579223 . . 0 22 hm5C_associated_SNPs_10870 0 0 1 2 57579208 57579228 mRNA hsa-miR-431 TCF12 miRanda miRanda
1211 chr15 66783610 66783610 1 + G A rs8684 66783627 + 66783607 66783647 41 TCAGTATACTGTGTGGGATACTTAGTGGTATGTCTCTTTAA TCAATATACTGTGTGGGATACTTAGTGGTATGTCTCTTTAA < 41bp 1 0.17492893988731 1 0.0416848659515381 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAP2K1 ENSG00000261351 ncRNA_intronic Human antisense chr15:66783627 chr15:66783610 . . 0 4 hm5C_associated_SNPs_10910 2 0 1 1 66783598 66783619 mRNA hsa-miR-144 MAP2K1 miRanda miRanda
1212 chr15 68099144 68099144 1 + C T rs191978176 68099139 + 68099119 68099159 41 CAGTAACCAAGGAGAACAACCCACCCGTCGCCCTTCTCCGT CAGTAACCAAGGAGAACAACCCACCTGTCGCCCTTCTCCGT < 41bp 1 0.268702196434883 1 0.0467779636383057 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MAP2K5 ENSG00000137764 UTR3 Human protein_coding chr15:68099139 chr15:68099144 . . 0 26 hm5C_associated_SNPs_10934 0 0 0 2 68099143 68099167 mRNA hsa-miR-103 MAP2K5 miRanda miRanda
1213 chr15 68099144 68099144 1 + C T rs191978176 68099139 + 68099119 68099159 41 CAGTAACCAAGGAGAACAACCCACCCGTCGCCCTTCTCCGT CAGTAACCAAGGAGAACAACCCACCTGTCGCCCTTCTCCGT < 41bp 1 0.268702196434883 1 0.0467779636383057 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MAP2K5 ENSG00000137764 UTR3 Human protein_coding chr15:68099139 chr15:68099144 . . 0 26 hm5C_associated_SNPs_10934 0 0 0 2 68099143 68099167 mRNA hsa-miR-107 MAP2K5 miRanda miRanda
1214 chr15 79615168 79615168 1 + C G rs74326713 79615183 + 79615163 79615203 41 AAAAACTAAGTGTGAGCGTCCTGGAGACTTGTGCCTTTATT AAAAAGTAAGTGTGAGCGTCCTGGAGACTTGTGCCTTTATT < 41bp 1 0.615777306460137 1 0.766409397125244 experiment 0.768445387079726 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TMED3 ENSG00000166557 UTR3 Human protein_coding chr15:79615183 chr15:79615168 . . 0 6 hm5C_associated_SNPs_10978 0 0 1 3 79615164 79615185 mRNA hsa-miR-28-5p TMED3 miRanda miRanda
1215 chr15 79615168 79615168 1 + C G rs74326713 79615183 + 79615163 79615203 41 AAAAACTAAGTGTGAGCGTCCTGGAGACTTGTGCCTTTATT AAAAAGTAAGTGTGAGCGTCCTGGAGACTTGTGCCTTTATT < 41bp 1 0.615777306460137 1 0.766409397125244 experiment 0.768445387079726 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TMED3 ENSG00000166557 UTR3 Human protein_coding chr15:79615183 chr15:79615168 . . 0 6 hm5C_associated_SNPs_10978 0 0 1 3 79615157 79615179 mRNA hsa-miR-342-3p TMED3 miRanda miRanda
1216 chr15 79615168 79615168 1 + C G rs74326713 79615183 + 79615163 79615203 41 AAAAACTAAGTGTGAGCGTCCTGGAGACTTGTGCCTTTATT AAAAAGTAAGTGTGAGCGTCCTGGAGACTTGTGCCTTTATT < 41bp 1 0.615777306460137 1 0.766409397125244 experiment 0.768445387079726 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TMED3 ENSG00000166557 UTR3 Human protein_coding chr15:79615183 chr15:79615168 . . 0 6 hm5C_associated_SNPs_10978 0 0 1 3 79615163 79615185 mRNA hsa-miR-708 TMED3 miRanda miRanda
1217 chr15 79615180 79615180 1 + G A rs139872152 79615183 + 79615163 79615203 41 AAAAACTAAGTGTGAGCGTCCTGGAGACTTGTGCCTTTATT AAAAACTAAGTGTGAGCATCCTGGAGACTTGTGCCTTTATT < 41bp 1 0.671713283673921 1 0.789909362792969 experiment 0.656573432652158 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TMED3 ENSG00000166557 UTR3 Human protein_coding chr15:79615183 chr15:79615180 . . 0 18 hm5C_associated_SNPs_10979 0 0 1 2 79615164 79615185 mRNA hsa-miR-28-5p TMED3 miRanda miRanda
1218 chr15 79615180 79615180 1 + G A rs139872152 79615183 + 79615163 79615203 41 AAAAACTAAGTGTGAGCGTCCTGGAGACTTGTGCCTTTATT AAAAACTAAGTGTGAGCATCCTGGAGACTTGTGCCTTTATT < 41bp 1 0.671713283673921 1 0.789909362792969 experiment 0.656573432652158 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TMED3 ENSG00000166557 UTR3 Human protein_coding chr15:79615183 chr15:79615180 . . 0 18 hm5C_associated_SNPs_10979 0 0 1 2 79615163 79615185 mRNA hsa-miR-708 TMED3 miRanda miRanda
1219 chr15 80430236 80430236 1 + C T rs556016603 80430256 + 80430236 80430276 41 CGTGCAGAAATTTTGGAGGGCTGTGATTTTTCCAGTATTAA TGTGCAGAAATTTTGGAGGGCTGTGATTTTTCCAGTATTAA < 41bp 1 0.251305646217977 1 0.0423670411109924 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFAND6 ENSG00000086666 UTR3 Human protein_coding chr15:80430256 chr15:80430236 . . 0 1 hm5C_associated_SNPs_11011 0 0 1 1 80430224 80430245 mRNA hsa-miR-544 ZFAND6 miRanda miRanda
1220 chr15 89835982 89835982 1 + C A rs28378332 89835978 + 89835958 89835998 41 TATAAGAATACAGTCATACCCTTACAGCAGGGAGAGGAGGA TATAAGAATACAGTCATACCCTTAAAGCAGGGAGAGGAGGA < 41bp 1 0.438281396881712 1 0.190776169300079 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout FANCI ENSG00000140525 CDS Human protein_coding chr15:89835978 chr15:89835982 nonsynonymous SNV 0.347 0 25 hm5C_associated_SNPs_11039 1 0 1 1 89835966 89835989 mRNA hsa-miR-370 FANCI miRanda miRanda
1221 chr16 107162 107162 1 + C G rs10266 107163 + 107143 107183 41 AGCCTCCAGACAGGACAACCCTCTTCATCACTGGTGGCTGA AGCCTCCAGACAGGACAACGCTCTTCATCACTGGTGGCTGA < 41bp 1 0.395314595047226 1 0.0434209406375885 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNRNP25 ENSG00000161981 UTR3 Human protein_coding chr16:107163 chr16:107162 . . 0 20 hm5C_associated_SNPs_11107 0 0 1 2 107144 107165 mRNA hsa-miR-296-3p SNRNP25 miRanda miRanda
1222 chr16 107162 107162 1 + C G rs10266 107163 + 107143 107183 41 AGCCTCCAGACAGGACAACCCTCTTCATCACTGGTGGCTGA AGCCTCCAGACAGGACAACGCTCTTCATCACTGGTGGCTGA < 41bp 1 0.395314595047226 1 0.0434209406375885 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNRNP25 ENSG00000161981 UTR3 Human protein_coding chr16:107163 chr16:107162 . . 0 20 hm5C_associated_SNPs_11107 0 0 1 2 107139 107165 mRNA hsa-miR-296-3p SNRNP25 miRanda miRanda
1223 chr16 460321 460321 1 + G A rs77446963 460313 + 460293 460333 41 TTCAAGACCGTGATGGACATCGATACCAGCGGCACCTTCAA TTCAAGACCGTGATGGACATCGATACCAACGGCACCTTCAA < 41bp 1 0.524449327845475 1 0.468924969434738 experiment 0.951101344309051 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DECR2 ENSG00000242612 CDS Human protein_coding chr16:460313 chr16:460321 nonsynonymous SNV 0.002 0 29 hm5C_associated_SNPs_11115 0 0 1 2 460309 460331 mRNA hsa-miR-18a DECR2 miRanda miRanda
1224 chr16 460321 460321 1 + G A rs77446963 460313 + 460293 460333 41 TTCAAGACCGTGATGGACATCGATACCAGCGGCACCTTCAA TTCAAGACCGTGATGGACATCGATACCAACGGCACCTTCAA < 41bp 1 0.524449327845475 1 0.468924969434738 experiment 0.951101344309051 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DECR2 ENSG00000242612 CDS Human protein_coding chr16:460313 chr16:460321 nonsynonymous SNV 0.002 0 29 hm5C_associated_SNPs_11115 0 0 1 2 460309 460331 mRNA hsa-miR-18b DECR2 miRanda miRanda
1225 chr16 713204 713204 1 + A G rs9929652 713185 + 713165 713205 41 TGGTGGTTCATGCCTGTGATCCCAGCACTCTGGGAGGCCAA TGGTGGTTCATGCCTGTGATCCCAGCACTCTGGGAGGCCGA < 41bp 1 0.0597151272097698 1 0.0262835323810577 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR90 ENSG00000161996 intronic Human protein_coding chr16:713185 chr16:713204 . . 0 40 hm5C_associated_SNPs_11147 0 0 0 1 713202 713223 mRNA hsa-miR-125a-3p WDR90 miRanda miRanda
1226 chr16 713204 713204 1 + A G rs9929652 713186 + 713166 713206 41 GGTGGTTCATGCCTGTGATCCCAGCACTCTGGGAGGCCAAG GGTGGTTCATGCCTGTGATCCCAGCACTCTGGGAGGCCGAG < 41bp 1 0.0471141015308007 1 0.250612378120422 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control WDR90 ENSG00000161996 intronic Human protein_coding chr16:713186 chr16:713204 . . 0 39 hm5C_associated_SNPs_11148 0 0 0 1 713202 713223 mRNA hsa-miR-125a-3p WDR90 miRanda miRanda
1227 chr16 713204 713204 1 + A G rs9929652 713187 + 713167 713207 41 GTGGTTCATGCCTGTGATCCCAGCACTCTGGGAGGCCAAGG GTGGTTCATGCCTGTGATCCCAGCACTCTGGGAGGCCGAGG < 41bp 1 0.410980364396783 1 0.280140578746796 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control WDR90 ENSG00000161996 intronic Human protein_coding chr16:713187 chr16:713204 . . 0 38 hm5C_associated_SNPs_11149 0 0 0 1 713202 713223 mRNA hsa-miR-125a-3p WDR90 miRanda miRanda
1228 chr16 2015245 2015245 1 + C A rs17135730 2015236 + 2015216 2015256 41 TGGCCGCGGGTGAGATTCGGCGCCCAGAGCCCCCGGGGGCC TGGCCGCGGGTGAGATTCGGCGCCCAGAGACCCCGGGGGCC < 41bp 1 0.34135870787951 1 0.272253185510635 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015236 chr16:2015245 . . 0 30 hm5C_associated_SNPs_11203 0 0 1 3 2015226 2015245 lncRNA hsa-miR-326 SNHG9 miRanda starBase2
1229 chr16 2015245 2015245 1 + C A rs17135730 2015236 + 2015216 2015256 41 TGGCCGCGGGTGAGATTCGGCGCCCAGAGCCCCCGGGGGCC TGGCCGCGGGTGAGATTCGGCGCCCAGAGACCCCGGGGGCC < 41bp 1 0.34135870787951 1 0.272253185510635 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015236 chr16:2015245 . . 0 30 hm5C_associated_SNPs_11203 0 0 1 3 2015223 2015245 lncRNA hsa-miR-330-5p SNHG9 miRanda starBase2
1230 chr16 2015245 2015245 1 + C A rs17135730 2015236 + 2015216 2015256 41 TGGCCGCGGGTGAGATTCGGCGCCCAGAGCCCCCGGGGGCC TGGCCGCGGGTGAGATTCGGCGCCCAGAGACCCCGGGGGCC < 41bp 1 0.34135870787951 1 0.272253185510635 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015236 chr16:2015245 . . 0 30 hm5C_associated_SNPs_11203 0 0 1 3 2015227 2015247 lncRNA hsa-miR-760 SNHG9 miRanda starBase2
1231 chr16 2015245 2015245 1 + C A rs17135730 2015239 + 2015219 2015259 41 CCGCGGGTGAGATTCGGCGCCCAGAGCCCCCGGGGGCCTCA CCGCGGGTGAGATTCGGCGCCCAGAGACCCCGGGGGCCTCA < 41bp 1 0.548502951885231 1 0.153854429721832 experiment 0.902994096229538 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015239 chr16:2015245 . . 0 27 hm5C_associated_SNPs_11204 0 0 1 3 2015226 2015245 lncRNA hsa-miR-326 SNHG9 miRanda starBase2
1232 chr16 2015245 2015245 1 + C A rs17135730 2015239 + 2015219 2015259 41 CCGCGGGTGAGATTCGGCGCCCAGAGCCCCCGGGGGCCTCA CCGCGGGTGAGATTCGGCGCCCAGAGACCCCGGGGGCCTCA < 41bp 1 0.548502951885231 1 0.153854429721832 experiment 0.902994096229538 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015239 chr16:2015245 . . 0 27 hm5C_associated_SNPs_11204 0 0 1 3 2015223 2015245 lncRNA hsa-miR-330-5p SNHG9 miRanda starBase2
1233 chr16 2015245 2015245 1 + C A rs17135730 2015239 + 2015219 2015259 41 CCGCGGGTGAGATTCGGCGCCCAGAGCCCCCGGGGGCCTCA CCGCGGGTGAGATTCGGCGCCCAGAGACCCCGGGGGCCTCA < 41bp 1 0.548502951885231 1 0.153854429721832 experiment 0.902994096229538 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015239 chr16:2015245 . . 0 27 hm5C_associated_SNPs_11204 0 0 1 3 2015227 2015247 lncRNA hsa-miR-760 SNHG9 miRanda starBase2
1234 chr16 2015245 2015245 1 + C A rs17135730 2015247 + 2015227 2015267 41 GAGATTCGGCGCCCAGAGCCCCCGGGGGCCTCAGCTCACCG GAGATTCGGCGCCCAGAGACCCCGGGGGCCTCAGCTCACCG < 41bp 1 0.601801455637175 1 0.688582479953766 experiment 0.79639708872565 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015247 chr16:2015245 . . 0 19 hm5C_associated_SNPs_11205 0 0 1 3 2015226 2015245 lncRNA hsa-miR-326 SNHG9 miRanda starBase2
1235 chr16 2015245 2015245 1 + C A rs17135730 2015247 + 2015227 2015267 41 GAGATTCGGCGCCCAGAGCCCCCGGGGGCCTCAGCTCACCG GAGATTCGGCGCCCAGAGACCCCGGGGGCCTCAGCTCACCG < 41bp 1 0.601801455637175 1 0.688582479953766 experiment 0.79639708872565 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015247 chr16:2015245 . . 0 19 hm5C_associated_SNPs_11205 0 0 1 3 2015223 2015245 lncRNA hsa-miR-330-5p SNHG9 miRanda starBase2
1236 chr16 2015245 2015245 1 + C A rs17135730 2015247 + 2015227 2015267 41 GAGATTCGGCGCCCAGAGCCCCCGGGGGCCTCAGCTCACCG GAGATTCGGCGCCCAGAGACCCCGGGGGCCTCAGCTCACCG < 41bp 1 0.601801455637175 1 0.688582479953766 experiment 0.79639708872565 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015247 chr16:2015245 . . 0 19 hm5C_associated_SNPs_11205 0 0 1 3 2015227 2015247 lncRNA hsa-miR-760 SNHG9 miRanda starBase2
1237 chr16 2015245 2015245 1 + C A rs17135730 2015256 + 2015236 2015276 41 CGCCCAGAGCCCCCGGGGGCCTCAGCTCACCGCGCGCTGCC CGCCCAGAGACCCCGGGGGCCTCAGCTCACCGCGCGCTGCC < 41bp 1 0.339126836778779 1 0.0451457500457764 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015256 chr16:2015245 . . 0 10 hm5C_associated_SNPs_11206 0 0 1 3 2015226 2015245 lncRNA hsa-miR-326 SNHG9 miRanda starBase2
1238 chr16 2015245 2015245 1 + C A rs17135730 2015256 + 2015236 2015276 41 CGCCCAGAGCCCCCGGGGGCCTCAGCTCACCGCGCGCTGCC CGCCCAGAGACCCCGGGGGCCTCAGCTCACCGCGCGCTGCC < 41bp 1 0.339126836778779 1 0.0451457500457764 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015256 chr16:2015245 . . 0 10 hm5C_associated_SNPs_11206 0 0 1 3 2015223 2015245 lncRNA hsa-miR-330-5p SNHG9 miRanda starBase2
1239 chr16 2015245 2015245 1 + C A rs17135730 2015256 + 2015236 2015276 41 CGCCCAGAGCCCCCGGGGGCCTCAGCTCACCGCGCGCTGCC CGCCCAGAGACCCCGGGGGCCTCAGCTCACCGCGCGCTGCC < 41bp 1 0.339126836778779 1 0.0451457500457764 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015256 chr16:2015245 . . 0 10 hm5C_associated_SNPs_11206 0 0 1 3 2015227 2015247 lncRNA hsa-miR-760 SNHG9 miRanda starBase2
1240 chr16 2999608 2999608 1 + C A rs538191771 2999623 + 2999603 2999643 41 CAGAGCCTCCTCCTTACTAACAAGGACCTGTCCGCAGCCGC CAGAGACTCCTCCTTACTAACAAGGACCTGTCCGCAGCCGC < 41bp 1 0.645986243761581 1 0.927721679210663 experiment 0.708027512476837 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLYWCH1 ENSG00000262482 ncRNA_intronic Human antisense chr16:2999623 chr16:2999608 . . 0 6 hm5C_associated_SNPs_11248 0 0 1 2 2999591 2999614 mRNA hsa-miR-28-5p FLYWCH1 miRanda miRanda
1241 chr16 2999608 2999608 1 + C A rs538191771 2999623 + 2999603 2999643 41 CAGAGCCTCCTCCTTACTAACAAGGACCTGTCCGCAGCCGC CAGAGACTCCTCCTTACTAACAAGGACCTGTCCGCAGCCGC < 41bp 1 0.645986243761581 1 0.927721679210663 experiment 0.708027512476837 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLYWCH1 ENSG00000262482 ncRNA_intronic Human antisense chr16:2999623 chr16:2999608 . . 0 6 hm5C_associated_SNPs_11248 0 0 1 2 2999590 2999614 mRNA hsa-miR-708 FLYWCH1 miRanda miRanda
1242 chr16 2999613 2999613 1 + T C rs143750803 2999623 + 2999603 2999643 41 CAGAGCCTCCTCCTTACTAACAAGGACCTGTCCGCAGCCGC CAGAGCCTCCCCCTTACTAACAAGGACCTGTCCGCAGCCGC < 41bp 1 0.645798866650606 1 0.912078738212585 experiment 0.708402266698787 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLYWCH1 ENSG00000262482 ncRNA_intronic Human antisense chr16:2999623 chr16:2999613 . . 0 11 hm5C_associated_SNPs_11249 0 0 1 2 2999591 2999614 mRNA hsa-miR-28-5p FLYWCH1 miRanda miRanda
1243 chr16 2999613 2999613 1 + T C rs143750803 2999623 + 2999603 2999643 41 CAGAGCCTCCTCCTTACTAACAAGGACCTGTCCGCAGCCGC CAGAGCCTCCCCCTTACTAACAAGGACCTGTCCGCAGCCGC < 41bp 1 0.645798866650606 1 0.912078738212585 experiment 0.708402266698787 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLYWCH1 ENSG00000262482 ncRNA_intronic Human antisense chr16:2999623 chr16:2999613 . . 0 11 hm5C_associated_SNPs_11249 0 0 1 2 2999590 2999614 mRNA hsa-miR-708 FLYWCH1 miRanda miRanda
1244 chr16 15503089 15503089 1 + C A rs576330877 15503093 + 15503073 15503113 41 GGATTACAGGCAGGTGCCACCATGCCTGGCTCATTTTTGTA GGATTACAGGCAGGTGACACCATGCCTGGCTCATTTTTGTA < 41bp 1 0.363210546186362 1 0.225329846143723 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPV17L ENSG00000156968 UTR3 Human protein_coding chr16:15503093 chr16:15503089 . . 0 17 hm5C_associated_SNPs_11507 0 0 0 1 15503070 15503092 mRNA hsa-miR-328 MPV17L miRanda miRanda
1245 chr16 16236004 16236004 1 + T A rs212090 16236001 + 16235981 16236021 41 AACAATCAATGCTGTTATTACTGTTCCCACCATGATTGATG AACAATCAATGCTGTTATTACTGATCCCACCATGATTGATG < 41bp 1 0.11728493020634 1 0.167732983827591 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCC1 ENSG00000103222 UTR3 Human protein_coding chr16:16236001 chr16:16236004 . . 0 24 hm5C_associated_SNPs_11513 0 0 1 1 16235989 16236014 mRNA hsa-miR-299-3p ABCC1 miRanda miRanda
1246 chr16 28848426 28848426 1 + C A rs534808521 28848411 + 28848391 28848431 41 TATAACTTCAGACTTGGGCCCCCTGTTCTTTCTTTCCCATT TATAACTTCAGACTTGGGCCCCCTGTTCTTTCTTTACCATT < 41bp 1 0.0996101046002554 1 0.0378513336181641 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN2L ENSG00000260570 ncRNA_exonic Human antisense chr16:28848411 chr16:28848426 . . 0 36 hm5C_associated_SNPs_11593 0 0 1 1 28848419 28848439 mRNA hsa-miR-26a ATXN2L miRanda miRanda
1247 chr16 29821868 29821868 1 + G A rs11144 29821878 + 29821858 29821898 41 GTAAGCCCATGCCCTGTCTTCCCAGGGACTTGTGAGCCTCT GTAAGCCCATACCCTGTCTTCCCAGGGACTTGTGAGCCTCT < 41bp 1 0.38123586819995 1 0.292255282402039 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAZ ENSG00000238045 ncRNA_exonic Human antisense chr16:29821878 chr16:29821868 . . 0 11 hm5C_associated_SNPs_11610 0 0 1 1 29821859 29821880 mRNA hsa-miR-7 MAZ miRanda miRanda
1248 chr16 30003372 30003372 1 + C T rs185285376 30003352 + 30003332 30003372 41 TCAGGATGGGGTCTTGGGGTCAGGATGCCTGGGTCTCTTCC TCAGGATGGGGTCTTGGGGTCAGGATGCCTGGGTCTCTTCT < 41bp 1 0.765763884446087 1 0.819483160972595 experiment 0.468472231107826 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAOK2 ENSG00000149930 UTR3 Human protein_coding chr16:30003352 chr16:30003372 . . 0 41 hm5C_associated_SNPs_11617 0 0 1 1 30003365 30003387 mRNA hsa-miR-505 TAOK2 miRanda miRanda
1249 chr16 50261755 50261755 1 + C T rs75174826 50261765 + 50261745 50261785 41 GTTAGGATTCCGATGCAACACCATGCAAAACCCCGAAACAG GTTAGGATTCTGATGCAACACCATGCAAAACCCCGAAACAG < 41bp 1 0.256541017553815 1 0.64474630355835 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAPD5 ENSG00000121274 CDS Human protein_coding chr16:50261765 chr16:50261755 synonymous SNV . 0 11 hm5C_associated_SNPs_11671 0 0 1 1 50261750 50261771 mRNA hsa-miR-138 PAPD5 miRanda miRanda
1250 chr16 57286491 57286491 1 + C T rs370149749 57286486 + 57286466 57286506 41 CTCCACCTGGGGGGCCCTTCCCCAGCATACCTGCTGGTGTG CTCCACCTGGGGGGCCCTTCCCCAGTATACCTGCTGGTGTG < 41bp 1 0.760050409463513 1 0.83372962474823 experiment 0.479899181072974 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ARL2BP ENSG00000260946 ncRNA_exonic Human other chr16:57286486 chr16:57286491 . . 0 26 hm5C_associated_SNPs_11700 0 0 1 2 57286489 57286508 mRNA hsa-miR-362-3p ARL2BP miRanda miRanda
1251 chr16 57286491 57286491 1 + C T rs370149749 57286486 + 57286466 57286506 41 CTCCACCTGGGGGGCCCTTCCCCAGCATACCTGCTGGTGTG CTCCACCTGGGGGGCCCTTCCCCAGTATACCTGCTGGTGTG < 41bp 1 0.760050409463513 1 0.83372962474823 experiment 0.479899181072974 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ARL2BP ENSG00000260946 ncRNA_exonic Human other chr16:57286486 chr16:57286491 . . 0 26 hm5C_associated_SNPs_11700 0 0 1 2 57286485 57286508 mRNA hsa-miR-329 ARL2BP miRanda miRanda
1252 chr16 57286491 57286491 1 + C T rs370149749 57286487 + 57286467 57286507 41 TCCACCTGGGGGGCCCTTCCCCAGCATACCTGCTGGTGTGT TCCACCTGGGGGGCCCTTCCCCAGTATACCTGCTGGTGTGT < 41bp 1 0.743605994793433 1 0.700554013252258 experiment 0.512788010413134 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ARL2BP ENSG00000260946 ncRNA_exonic Human other chr16:57286487 chr16:57286491 . . 0 25 hm5C_associated_SNPs_11701 0 0 1 2 57286489 57286508 mRNA hsa-miR-362-3p ARL2BP miRanda miRanda
1253 chr16 57286491 57286491 1 + C T rs370149749 57286487 + 57286467 57286507 41 TCCACCTGGGGGGCCCTTCCCCAGCATACCTGCTGGTGTGT TCCACCTGGGGGGCCCTTCCCCAGTATACCTGCTGGTGTGT < 41bp 1 0.743605994793433 1 0.700554013252258 experiment 0.512788010413134 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ARL2BP ENSG00000260946 ncRNA_exonic Human other chr16:57286487 chr16:57286491 . . 0 25 hm5C_associated_SNPs_11701 0 0 1 2 57286485 57286508 mRNA hsa-miR-329 ARL2BP miRanda miRanda
1254 chr16 66920758 66920758 1 + G C rs576539581 66920738 + 66920718 66920758 41 ATTCACCCTGCACCTGCCAACTGCAAAATATTGTCTGAAAG ATTCACCCTGCACCTGCCAACTGCAAAATATTGTCTGAAAC < 41bp 1 0.738504871206366 1 0.655861675739288 experiment 0.522990257587268 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDP2 ENSG00000172840 UTR3 Human protein_coding chr16:66920738 chr16:66920758 . . 0 41 hm5C_associated_SNPs_11752 0 0 1 1 66920758 66920778 mRNA hsa-miR-873 PDP2 miRanda miRanda
1255 chr16 70367545 70367545 1 + G A rs397821730 70367559 + 70367539 70367579 41 AAGTGCGTTCAGGGCACAGGCCCCGACATCACCCCAAGGAC AAGTGCATTCAGGGCACAGGCCCCGACATCACCCCAAGGAC < 41bp 1 0.619167661772314 1 0.38948455452919 experiment 0.761664676455373 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LOC100506083 ENSG00000261777 ncRNA_intronic Human processed_transcript chr16:70367559 chr16:70367545 . . 0 7 hm5C_associated_SNPs_11805 0 0 1 1 70367534 70367555 mRNA hsa-miR-874 DDX19B miRanda miRanda
1256 chr16 70367548 70367548 1 + C G rs148606610 70367559 + 70367539 70367579 41 AAGTGCGTTCAGGGCACAGGCCCCGACATCACCCCAAGGAC AAGTGCGTTGAGGGCACAGGCCCCGACATCACCCCAAGGAC < 41bp 1 0.619747478065386 1 0.271716922521591 experiment 0.760505043869227 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LOC100506083 ENSG00000261777 ncRNA_intronic Human processed_transcript chr16:70367559 chr16:70367548 . . 0 10 hm5C_associated_SNPs_11806 0 0 1 1 70367534 70367555 mRNA hsa-miR-874 DDX19B miRanda miRanda
1257 chr16 71956505 71956505 1 + G A rs72801788 71956504 + 71956484 71956524 41 AGTTGGTGGACCTGATGGAACGGTGCCAATGCCCATGCCCA AGTTGGTGGACCTGATGGAACAGTGCCAATGCCCATGCCCA < 41bp 1 0.633728613577474 1 0.247315764427185 experiment 0.732542772845052 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IST1 ENSG00000182149 CDS Human protein_coding chr16:71956504 chr16:71956505 synonymous SNV . 0 22 hm5C_associated_SNPs_11851 0 0 1 2 71956491 71956513 mRNA hsa-miR-96 KIAA0174 miRanda miRanda
1258 chr16 71956505 71956505 1 + G A rs72801788 71956504 + 71956484 71956524 41 AGTTGGTGGACCTGATGGAACGGTGCCAATGCCCATGCCCA AGTTGGTGGACCTGATGGAACAGTGCCAATGCCCATGCCCA < 41bp 1 0.633728613577474 1 0.247315764427185 experiment 0.732542772845052 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IST1 ENSG00000182149 CDS Human protein_coding chr16:71956504 chr16:71956505 synonymous SNV . 0 22 hm5C_associated_SNPs_11851 0 0 1 2 71956492 71956513 mRNA hsa-miR-1271 KIAA0174 miRanda miRanda
1259 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079226 81079250 mRNA hsa-miR-17 ATMIN miRanda miRanda
1260 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079226 81079250 mRNA hsa-miR-20a ATMIN miRanda miRanda
1261 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079226 81079250 mRNA hsa-miR-93 ATMIN miRanda miRanda
1262 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079226 81079250 mRNA hsa-miR-106a ATMIN miRanda miRanda
1263 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079229 81079250 mRNA hsa-miR-106b ATMIN miRanda miRanda
1264 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079222 81079249 mRNA hsa-miR-302a ATMIN miRanda miRanda
1265 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079227 81079249 mRNA hsa-miR-302b ATMIN miRanda miRanda
1266 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079226 81079249 mRNA hsa-miR-302c ATMIN miRanda miRanda
1267 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079226 81079249 mRNA hsa-miR-302d ATMIN miRanda miRanda
1268 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079228 81079249 mRNA hsa-miR-372 ATMIN miRanda miRanda
1269 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079225 81079249 mRNA hsa-miR-373 ATMIN miRanda miRanda
1270 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079222 81079250 mRNA hsa-miR-20b ATMIN miRanda miRanda
1271 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079228 81079249 mRNA hsa-miR-520e ATMIN miRanda miRanda
1272 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079227 81079249 mRNA hsa-miR-520a-3p ATMIN miRanda miRanda
1273 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079228 81079249 mRNA hsa-miR-520b ATMIN miRanda miRanda
1274 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079227 81079249 mRNA hsa-miR-520c-3p ATMIN miRanda miRanda
1275 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079228 81079250 mRNA hsa-miR-519d ATMIN miRanda miRanda
1276 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079226 81079249 mRNA hsa-miR-520d-3p ATMIN miRanda miRanda
1277 chr16 81079233 81079233 1 + C G rs2278024 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATAGAAGTGTACAGCACTTTACACACAAGAGG < 41bp 1 0.778409093439111 1 0.378992974758148 experiment 0.443181813121778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079233 . . 0 13 hm5C_associated_SNPs_11888 0 0 0 19 81079232 81079249 mRNA hsa-miR-302e ATMIN miRanda miRanda
1278 chr16 83845980 83845980 1 + T G rs180677200 83845960 + 83845940 83845980 41 AAAACACTATTTTACTTAAACTGTTTCTTATCTAAATTCTT AAAACACTATTTTACTTAAACTGTTTCTTATCTAAATTCTG < 41bp 1 0.198374750726224 1 0.0442304015159607 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSBP1 ENSG00000230989 UTR3 Human protein_coding chr16:83845960 chr16:83845980 . . 0 41 hm5C_associated_SNPs_11893 0 0 1 1 83845973 83845994 mRNA hsa-miR-367 HSBP1 miRanda miRanda
1279 chr16 85840474 85840474 1 + G A rs184745241 85840456 + 85840436 85840476 41 TTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAGAA TTAGCCTCCAAGTGGGACTACGAAAAGAACGAGTGGAAAAA < 41bp 1 0.779164863827316 1 0.329088181257248 experiment 0.441670272345368 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control COX4I1 ENSG00000131143 CDS Human protein_coding chr16:85840456 chr16:85840474 synonymous SNV . 0 39 hm5C_associated_SNPs_11920 0 0 1 1 85840470 85840491 mRNA hsa-miR-338-3p COX4I1 miRanda miRanda
1280 chr16 89727606 89727606 1 + G A rs188486606 89727624 + 89727604 89727644 41 CTGTTAGGATATTGATGTGGCTTGGCTGTGTCCTCACCCAA CTATTAGGATATTGATGTGGCTTGGCTGTGTCCTCACCCAA < 41bp 1 0.348106478680774 1 0.0798616409301758 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATA33 ENSG00000167523 UTR3 Human protein_coding chr16:89727624 chr16:89727606 . . 0 3 hm5C_associated_SNPs_12015 0 0 1 1 89727584 89727606 mRNA hsa-miR-22 C16orf55 miRanda miRanda
1281 chr17 1658354 1658354 1 + T C rs567488309 1658339 + 1658319 1658359 41 GGCCTAACCTGCCGAGAGTCCATCAGCCTCCATCCTACCCC GGCCTAACCTGCCGAGAGTCCATCAGCCTCCATCCCACCCC < 41bp 1 0.783487279842284 1 0.0374190509319305 experiment 0.433025440315432 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINF2 ENSG00000167711 UTR3 Human protein_coding chr17:1658339 chr17:1658354 . . 0 36 hm5C_associated_SNPs_12036 0 0 1 2 1658350 1658369 mRNA hsa-miR-124 SERPINF2 miRanda miRanda
1282 chr17 1658354 1658354 1 + T C rs567488309 1658339 + 1658319 1658359 41 GGCCTAACCTGCCGAGAGTCCATCAGCCTCCATCCTACCCC GGCCTAACCTGCCGAGAGTCCATCAGCCTCCATCCCACCCC < 41bp 1 0.783487279842284 1 0.0374190509319305 experiment 0.433025440315432 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINF2 ENSG00000167711 UTR3 Human protein_coding chr17:1658339 chr17:1658354 . . 0 36 hm5C_associated_SNPs_12036 0 0 1 2 1658349 1658369 mRNA hsa-miR-506 SERPINF2 miRanda miRanda
1283 chr17 1658359 1658359 1 + C A rs552317098 1658339 + 1658319 1658359 41 GGCCTAACCTGCCGAGAGTCCATCAGCCTCCATCCTACCCC GGCCTAACCTGCCGAGAGTCCATCAGCCTCCATCCTACCCA < 41bp 1 0.748230952060503 1 0.0251156389713287 experiment 0.503538095878994 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINF2 ENSG00000167711 UTR3 Human protein_coding chr17:1658339 chr17:1658359 . . 0 41 hm5C_associated_SNPs_12037 0 0 1 2 1658350 1658369 mRNA hsa-miR-124 SERPINF2 miRanda miRanda
1284 chr17 1658359 1658359 1 + C A rs552317098 1658339 + 1658319 1658359 41 GGCCTAACCTGCCGAGAGTCCATCAGCCTCCATCCTACCCC GGCCTAACCTGCCGAGAGTCCATCAGCCTCCATCCTACCCA < 41bp 1 0.748230952060503 1 0.0251156389713287 experiment 0.503538095878994 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINF2 ENSG00000167711 UTR3 Human protein_coding chr17:1658339 chr17:1658359 . . 0 41 hm5C_associated_SNPs_12037 0 0 1 2 1658349 1658369 mRNA hsa-miR-506 SERPINF2 miRanda miRanda
1285 chr17 2541480 2541480 1 + T C rs533089397 2541477 + 2541457 2541497 41 ATTTTCCCCTGTGTGGAAGACACTTAGTGGCATATTTAAAT ATTTTCCCCTGTGTGGAAGACACCTAGTGGCATATTTAAAT < 41bp 1 0.337807775562646 1 0.0292070508003235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAFAH1B1 ENSG00000007168 UTR5 Human protein_coding chr17:2541477 chr17:2541480 . . 0 24 hm5C_associated_SNPs_12045 0 0 1 12 2541459 2541482 mRNA hsa-miR-302a PAFAH1B1 miRanda miRanda
1286 chr17 2541480 2541480 1 + T C rs533089397 2541477 + 2541457 2541497 41 ATTTTCCCCTGTGTGGAAGACACTTAGTGGCATATTTAAAT ATTTTCCCCTGTGTGGAAGACACCTAGTGGCATATTTAAAT < 41bp 1 0.337807775562646 1 0.0292070508003235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAFAH1B1 ENSG00000007168 UTR5 Human protein_coding chr17:2541477 chr17:2541480 . . 0 24 hm5C_associated_SNPs_12045 0 0 1 12 2541459 2541482 mRNA hsa-miR-302b PAFAH1B1 miRanda miRanda
1287 chr17 2541480 2541480 1 + T C rs533089397 2541477 + 2541457 2541497 41 ATTTTCCCCTGTGTGGAAGACACTTAGTGGCATATTTAAAT ATTTTCCCCTGTGTGGAAGACACCTAGTGGCATATTTAAAT < 41bp 1 0.337807775562646 1 0.0292070508003235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAFAH1B1 ENSG00000007168 UTR5 Human protein_coding chr17:2541477 chr17:2541480 . . 0 24 hm5C_associated_SNPs_12045 0 0 1 12 2541459 2541482 mRNA hsa-miR-302c PAFAH1B1 miRanda miRanda
1288 chr17 2541480 2541480 1 + T C rs533089397 2541477 + 2541457 2541497 41 ATTTTCCCCTGTGTGGAAGACACTTAGTGGCATATTTAAAT ATTTTCCCCTGTGTGGAAGACACCTAGTGGCATATTTAAAT < 41bp 1 0.337807775562646 1 0.0292070508003235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAFAH1B1 ENSG00000007168 UTR5 Human protein_coding chr17:2541477 chr17:2541480 . . 0 24 hm5C_associated_SNPs_12045 0 0 1 12 2541459 2541482 mRNA hsa-miR-302d PAFAH1B1 miRanda miRanda
1289 chr17 2541480 2541480 1 + T C rs533089397 2541477 + 2541457 2541497 41 ATTTTCCCCTGTGTGGAAGACACTTAGTGGCATATTTAAAT ATTTTCCCCTGTGTGGAAGACACCTAGTGGCATATTTAAAT < 41bp 1 0.337807775562646 1 0.0292070508003235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAFAH1B1 ENSG00000007168 UTR5 Human protein_coding chr17:2541477 chr17:2541480 . . 0 24 hm5C_associated_SNPs_12045 0 0 1 12 2541459 2541482 mRNA hsa-miR-372 PAFAH1B1 miRanda miRanda
1290 chr17 2541480 2541480 1 + T C rs533089397 2541477 + 2541457 2541497 41 ATTTTCCCCTGTGTGGAAGACACTTAGTGGCATATTTAAAT ATTTTCCCCTGTGTGGAAGACACCTAGTGGCATATTTAAAT < 41bp 1 0.337807775562646 1 0.0292070508003235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAFAH1B1 ENSG00000007168 UTR5 Human protein_coding chr17:2541477 chr17:2541480 . . 0 24 hm5C_associated_SNPs_12045 0 0 1 12 2541459 2541482 mRNA hsa-miR-373 PAFAH1B1 miRanda miRanda
1291 chr17 2541480 2541480 1 + T C rs533089397 2541477 + 2541457 2541497 41 ATTTTCCCCTGTGTGGAAGACACTTAGTGGCATATTTAAAT ATTTTCCCCTGTGTGGAAGACACCTAGTGGCATATTTAAAT < 41bp 1 0.337807775562646 1 0.0292070508003235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAFAH1B1 ENSG00000007168 UTR5 Human protein_coding chr17:2541477 chr17:2541480 . . 0 24 hm5C_associated_SNPs_12045 0 0 1 12 2541460 2541482 mRNA hsa-miR-520a-3p PAFAH1B1 miRanda miRanda
1292 chr17 2541480 2541480 1 + T C rs533089397 2541477 + 2541457 2541497 41 ATTTTCCCCTGTGTGGAAGACACTTAGTGGCATATTTAAAT ATTTTCCCCTGTGTGGAAGACACCTAGTGGCATATTTAAAT < 41bp 1 0.337807775562646 1 0.0292070508003235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAFAH1B1 ENSG00000007168 UTR5 Human protein_coding chr17:2541477 chr17:2541480 . . 0 24 hm5C_associated_SNPs_12045 0 0 1 12 2541461 2541482 mRNA hsa-miR-520b PAFAH1B1 miRanda miRanda
1293 chr17 2541480 2541480 1 + T C rs533089397 2541477 + 2541457 2541497 41 ATTTTCCCCTGTGTGGAAGACACTTAGTGGCATATTTAAAT ATTTTCCCCTGTGTGGAAGACACCTAGTGGCATATTTAAAT < 41bp 1 0.337807775562646 1 0.0292070508003235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAFAH1B1 ENSG00000007168 UTR5 Human protein_coding chr17:2541477 chr17:2541480 . . 0 24 hm5C_associated_SNPs_12045 0 0 1 12 2541460 2541482 mRNA hsa-miR-520c-3p PAFAH1B1 miRanda miRanda
1294 chr17 2541480 2541480 1 + T C rs533089397 2541477 + 2541457 2541497 41 ATTTTCCCCTGTGTGGAAGACACTTAGTGGCATATTTAAAT ATTTTCCCCTGTGTGGAAGACACCTAGTGGCATATTTAAAT < 41bp 1 0.337807775562646 1 0.0292070508003235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAFAH1B1 ENSG00000007168 UTR5 Human protein_coding chr17:2541477 chr17:2541480 . . 0 24 hm5C_associated_SNPs_12045 0 0 1 12 2541460 2541482 mRNA hsa-miR-520d-3p PAFAH1B1 miRanda miRanda
1295 chr17 2541480 2541480 1 + T C rs533089397 2541477 + 2541457 2541497 41 ATTTTCCCCTGTGTGGAAGACACTTAGTGGCATATTTAAAT ATTTTCCCCTGTGTGGAAGACACCTAGTGGCATATTTAAAT < 41bp 1 0.337807775562646 1 0.0292070508003235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAFAH1B1 ENSG00000007168 UTR5 Human protein_coding chr17:2541477 chr17:2541480 . . 0 24 hm5C_associated_SNPs_12045 0 0 1 12 2541477 2541502 mRNA hsa-miR-374b PAFAH1B1 miRanda miRanda
1296 chr17 2541480 2541480 1 + T C rs533089397 2541477 + 2541457 2541497 41 ATTTTCCCCTGTGTGGAAGACACTTAGTGGCATATTTAAAT ATTTTCCCCTGTGTGGAAGACACCTAGTGGCATATTTAAAT < 41bp 1 0.337807775562646 1 0.0292070508003235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAFAH1B1 ENSG00000007168 UTR5 Human protein_coding chr17:2541477 chr17:2541480 . . 0 24 hm5C_associated_SNPs_12045 0 0 1 12 2541465 2541482 mRNA hsa-miR-302e PAFAH1B1 miRanda miRanda
1297 chr17 2585948 2585948 1 + A G rs144602512 2585961 + 2585941 2585981 41 GTGTGTCATGGTACAAATCACTATTCGTTTTTGGTGTTTTT GTGTGTCGTGGTACAAATCACTATTCGTTTTTGGTGTTTTT < 41bp 1 0.0735019182079949 1 0.0454476475715637 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAFAH1B1 ENSG00000007168 UTR3 Human protein_coding chr17:2585961 chr17:2585948 . . 0 8 hm5C_associated_SNPs_12046 1 0 1 1 2585928 2585950 mRNA hsa-miR-425 PAFAH1B1 miRanda miRanda
1298 chr17 5286761 5286761 1 + G A rs563022596 5286768 + 5286748 5286788 41 GATTCCAACAGGCGTGGGATCAGATTTGGTGATGGAAAAAG GATTCCAACAGGCATGGGATCAGATTTGGTGATGGAAAAAG < 41bp 1 0.589328319394199 1 0.397311449050903 experiment 0.821343361211603 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RABEP1 ENSG00000029725 UTR3 Human protein_coding chr17:5286768 chr17:5286761 . . 0 14 hm5C_associated_SNPs_12126 0 0 1 1 5286739 5286763 mRNA hsa-miR-10b RABEP1 miRanda miRanda
1299 chr17 7163137 7163137 1 + G A rs548498221 7163120 + 7163100 7163140 41 CCTGCCCCACCTTGGTTCCCCTTGTCTATGGAGCCCCGCCT CCTGCCCCACCTTGGTTCCCCTTGTCTATGGAGCCCCACCT < 41bp 1 0.486160043496102 1 0.0245595574378967 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ELP5 ENSG00000170291 UTR3 Human protein_coding chr17:7163120 chr17:7163137 . . 0 38 hm5C_associated_SNPs_12141 0 0 1 1 7163128 7163151 mRNA hsa-miR-149 C17orf81 miRanda miRanda
1300 chr17 7460957 7460957 1 + G T rs9907657 7460945 + 7460925 7460965 41 TCTCGACTCCCCCCTGGCCACAGACCCCCAGGGCATTGTGT TCTCGACTCCCCCCTGGCCACAGACCCCCAGGTCATTGTGT < 41bp 1 0.163890939445497 1 0.11055925488472 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNFSF12 ENSG00000239697 UTR3 Human protein_coding chr17:7460945 chr17:7460957 . . 0 33 hm5C_associated_SNPs_12149 0 0 0 2 7460941 7460962 mRNA hsa-miR-365 TNFSF12 miRanda miRanda
1301 chr17 7460957 7460957 1 + G T rs9907657 7460945 + 7460925 7460965 41 TCTCGACTCCCCCCTGGCCACAGACCCCCAGGGCATTGTGT TCTCGACTCCCCCCTGGCCACAGACCCCCAGGTCATTGTGT < 41bp 1 0.163890939445497 1 0.11055925488472 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNFSF12 ENSG00000239697 UTR3 Human protein_coding chr17:7460945 chr17:7460957 . . 0 33 hm5C_associated_SNPs_12149 0 0 0 2 7460939 7460960 mRNA hsa-miR-874 TNFSF12 miRanda miRanda
1302 chr17 14110901 14110901 1 + A G rs11078234 14110919 + 14110899 14110939 41 GCAGAGTGGCACTTGGTGGCCAGAAAGTGTGAGCCTCATGA GCGGAGTGGCACTTGGTGGCCAGAAAGTGTGAGCCTCATGA < 41bp 1 0.76448999150835 1 0.645110726356506 experiment 0.471020016983301 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COX10 ENSG00000006695 UTR3 Human protein_coding chr17:14110919 chr17:14110901 . . 0 3 hm5C_associated_SNPs_12263 2 0 1 1 14110881 14110903 mRNA hsa-miR-330-5p COX10 miRanda miRanda
1303 chr17 15907568 15907568 1 + G A rs58517927 15907552 + 15907532 15907572 41 TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCGCAGA TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCACAGA < 41bp 1 0.123747155104089 1 0.0638697445392609 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15907552 chr17:15907568 synonymous SNV . 0 37 hm5C_associated_SNPs_12269 2 0 1 2 15907545 15907568 mRNA hsa-miR-103 TTC19 miRanda miRanda
1304 chr17 15907568 15907568 1 + G A rs58517927 15907552 + 15907532 15907572 41 TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCGCAGA TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCACAGA < 41bp 1 0.123747155104089 1 0.0638697445392609 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15907552 chr17:15907568 synonymous SNV . 0 37 hm5C_associated_SNPs_12269 2 0 1 2 15907545 15907568 mRNA hsa-miR-107 TTC19 miRanda miRanda
1305 chr17 15929920 15929920 1 + A C rs143293913 15929902 + 15929882 15929922 41 CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCCTATATT CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCCTATCTT < 41bp 1 0.217238720764789 1 0.0309081375598907 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15929902 chr17:15929920 nonsynonymous SNV 0.985 1 39 hm5C_associated_SNPs_12270 0 0 1 1 15929911 15929931 mRNA hsa-miR-448 TTC19 miRanda miRanda
1306 chr17 15931582 15931582 1 + C G rs143866104 15931565 + 15931545 15931585 41 TGAACACTCTACTTCCTTTGCAGCCTTAGTCACACAACTGA TGAACACTCTACTTCCTTTGCAGCCTTAGTCACACAAGTGA < 41bp 1 0.465918700099296 1 0.109746515750885 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TTC19 ENSG00000011295 UTR3 Human protein_coding chr17:15931565 chr17:15931582 . . 0 38 hm5C_associated_SNPs_12272 1 0 1 1 15931573 15931594 mRNA hsa-miR-143 TTC19 miRanda miRanda
1307 chr17 19239702 19239702 1 + T A rs111954981 19239712 + 19239692 19239732 41 GTGATTCTTTTGTAACGAGTCTTTCATGATGTGACTTTGAG GTGATTCTTTAGTAACGAGTCTTTCATGATGTGACTTTGAG < 41bp 1 0.0691489017679214 1 0.0431336462497711 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control B9D1;EPN2 ENSG00000072134 UTR3 Human protein_coding chr17:19239712 chr17:19239702 . . 0 11 hm5C_associated_SNPs_12315 0 0 1 1 19239680 19239702 mRNA hsa-miR-186 EPN2 miRanda miRanda
1308 chr17 26672162 26672162 1 + T C rs556668726 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT CGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT < 41bp 1 0.688447368140474 1 0.946739912033081 experiment 0.623105263719052 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672162 . . 0 1 hm5C_associated_SNPs_12344 0 0 1 2 26672145 26672167 mRNA hsa-miR-448 TNFAIP1 miRanda miRanda
1309 chr17 26672162 26672162 1 + T C rs556668726 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT CGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT < 41bp 1 0.688447368140474 1 0.946739912033081 experiment 0.623105263719052 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672162 . . 0 1 hm5C_associated_SNPs_12344 0 0 1 2 26672148 26672170 mRNA hsa-miR-544 TNFAIP1 miRanda miRanda
1310 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672195 26672219 mRNA hsa-miR-17 TNFAIP1 miRanda miRanda
1311 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672195 26672219 mRNA hsa-miR-20a TNFAIP1 miRanda miRanda
1312 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672195 26672219 mRNA hsa-miR-93 TNFAIP1 miRanda miRanda
1313 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672195 26672219 mRNA hsa-miR-106a TNFAIP1 miRanda miRanda
1314 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672182 26672204 mRNA hsa-miR-212 TNFAIP1 miRanda miRanda
1315 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672181 26672204 mRNA hsa-miR-132 TNFAIP1 miRanda miRanda
1316 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672197 26672219 mRNA hsa-miR-106b TNFAIP1 miRanda miRanda
1317 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672196 26672218 mRNA hsa-miR-302a TNFAIP1 miRanda miRanda
1318 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672196 26672218 mRNA hsa-miR-302b TNFAIP1 miRanda miRanda
1319 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672196 26672218 mRNA hsa-miR-302c TNFAIP1 miRanda miRanda
1320 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672196 26672218 mRNA hsa-miR-302d TNFAIP1 miRanda miRanda
1321 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672196 26672218 mRNA hsa-miR-372 TNFAIP1 miRanda miRanda
1322 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672196 26672218 mRNA hsa-miR-373 TNFAIP1 miRanda miRanda
1323 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672195 26672219 mRNA hsa-miR-20b TNFAIP1 miRanda miRanda
1324 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672198 26672218 mRNA hsa-miR-520e TNFAIP1 miRanda miRanda
1325 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672197 26672218 mRNA hsa-miR-520a-3p TNFAIP1 miRanda miRanda
1326 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672198 26672218 mRNA hsa-miR-520b TNFAIP1 miRanda miRanda
1327 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672197 26672218 mRNA hsa-miR-520c-3p TNFAIP1 miRanda miRanda
1328 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 26672197 26672218 mRNA hsa-miR-520d-3p TNFAIP1 miRanda miRanda
1329 chr17 34051052 34051052 1 + C T rs141919698 34051057 + 34051037 34051077 41 TTGTAATTGAGAGCTCATTTCAAAAGCAGAAAAAGACAACA TTGTAATTGAGAGCTTATTTCAAAAGCAGAAAAAGACAACA < 41bp 1 0.490745789507318 1 0.656023442745209 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34051057 chr17:34051052 . . 0 16 hm5C_associated_SNPs_12388 0 0 1 2 34051038 34051059 mRNA hsa-miR-203 AP2B1 miRanda miRanda
1330 chr17 34051052 34051052 1 + C T rs141919698 34051057 + 34051037 34051077 41 TTGTAATTGAGAGCTCATTTCAAAAGCAGAAAAAGACAACA TTGTAATTGAGAGCTTATTTCAAAAGCAGAAAAAGACAACA < 41bp 1 0.490745789507318 1 0.656023442745209 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34051057 chr17:34051052 . . 0 16 hm5C_associated_SNPs_12388 0 0 1 2 34051047 34051068 mRNA hsa-miR-544 AP2B1 miRanda miRanda
1331 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052505 34052527 mRNA hsa-miR-17 AP2B1 miRanda miRanda
1332 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052504 34052527 mRNA hsa-miR-20a AP2B1 miRanda miRanda
1333 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052504 34052527 mRNA hsa-miR-93 AP2B1 miRanda miRanda
1334 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052505 34052527 mRNA hsa-miR-106a AP2B1 miRanda miRanda
1335 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052507 34052527 mRNA hsa-miR-106b AP2B1 miRanda miRanda
1336 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052504 34052526 mRNA hsa-miR-302a AP2B1 miRanda miRanda
1337 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052504 34052526 mRNA hsa-miR-302b AP2B1 miRanda miRanda
1338 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052504 34052526 mRNA hsa-miR-302c AP2B1 miRanda miRanda
1339 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052507 34052526 mRNA hsa-miR-302d AP2B1 miRanda miRanda
1340 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052504 34052526 mRNA hsa-miR-372 AP2B1 miRanda miRanda
1341 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052508 34052526 mRNA hsa-miR-373 AP2B1 miRanda miRanda
1342 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052507 34052527 mRNA hsa-miR-20b AP2B1 miRanda miRanda
1343 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052506 34052526 mRNA hsa-miR-520e AP2B1 miRanda miRanda
1344 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052507 34052526 mRNA hsa-miR-520a-3p AP2B1 miRanda miRanda
1345 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052506 34052526 mRNA hsa-miR-520b AP2B1 miRanda miRanda
1346 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052505 34052526 mRNA hsa-miR-520c-3p AP2B1 miRanda miRanda
1347 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052506 34052527 mRNA hsa-miR-519d AP2B1 miRanda miRanda
1348 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052506 34052526 mRNA hsa-miR-520d-3p AP2B1 miRanda miRanda
1349 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 34052510 34052526 mRNA hsa-miR-302e AP2B1 miRanda miRanda
1350 chr17 37075096 37075096 1 + C A rs114909359 37075095 + 37075075 37075115 41 GCATCCGTCCTGGGCGTGACCCGTCCATTCTTCAGTGTCTC GCATCCGTCCTGGGCGTGACCAGTCCATTCTTCAGTGTCTC < 41bp 1 0.158830500988017 1 0.0802165269851685 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LASP1 ENSG00000265784 ncRNA_exonic Human antisense chr17:37075095 chr17:37075096 . . 0 22 hm5C_associated_SNPs_12410 0 0 1 1 37075092 37075116 mRNA hsa-miR-146a LASP1 miRanda miRanda
1351 chr17 42085972 42085972 1 + C A rs186636 42085966 + 42085946 42085986 41 CCAGCTTCTGACCCAGGCAGCTGACCCTCACCATGGACACT CCAGCTTCTGACCCAGGCAGCTGACCATCACCATGGACACT < 41bp 1 0.113628311253499 1 0.112264811992645 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAGS ENSG00000161653 UTR3 Human protein_coding chr17:42085966 chr17:42085972 . . 0 27 hm5C_associated_SNPs_12478 0 0 0 1 42085970 42085989 mRNA hsa-miR-142-3p NAGS miRanda miRanda
1352 chr17 43311739 43311739 1 + A C rs148012563 43311752 + 43311732 43311772 41 AGAAGCCATCAGGGGTGGGGCTGGGTGCTGTGGCTCATGCC AGAAGCCCTCAGGGGTGGGGCTGGGTGCTGTGGCTCATGCC < 41bp 1 0.419907495606791 1 0.713801622390747 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control FMNL1 ENSG00000184922 intronic Human protein_coding chr17:43311752 chr17:43311739 . . 0 8 hm5C_associated_SNPs_12495 0 0 0 2 43311720 43311741 mRNA hsa-miR-135a FMNL1 miRanda miRanda
1353 chr17 43311739 43311739 1 + A C rs148012563 43311752 + 43311732 43311772 41 AGAAGCCATCAGGGGTGGGGCTGGGTGCTGTGGCTCATGCC AGAAGCCCTCAGGGGTGGGGCTGGGTGCTGTGGCTCATGCC < 41bp 1 0.419907495606791 1 0.713801622390747 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control FMNL1 ENSG00000184922 intronic Human protein_coding chr17:43311752 chr17:43311739 . . 0 8 hm5C_associated_SNPs_12495 0 0 0 2 43311716 43311741 mRNA hsa-miR-135b FMNL1 miRanda miRanda
1354 chr17 44834393 44834393 1 + A G rs181109040 44834373 + 44834353 44834393 41 GTGCCTCTCTCTCCCAACTGCTGCTTAAAATGCAAGGACAA GTGCCTCTCTCTCCCAACTGCTGCTTAAAATGCAAGGACAG < 41bp 1 0.434026381684048 1 0.44599261879921 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control NSF ENSG00000073969 UTR3 Human protein_coding chr17:44834373 chr17:44834393 . . 0 41 hm5C_associated_SNPs_12498 0 0 0 2 44834388 44834409 mRNA hsa-miR-135a NSF miRanda miRanda
1355 chr17 44834393 44834393 1 + A G rs181109040 44834373 + 44834353 44834393 41 GTGCCTCTCTCTCCCAACTGCTGCTTAAAATGCAAGGACAA GTGCCTCTCTCTCCCAACTGCTGCTTAAAATGCAAGGACAG < 41bp 1 0.434026381684048 1 0.44599261879921 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control NSF ENSG00000073969 UTR3 Human protein_coding chr17:44834373 chr17:44834393 . . 0 41 hm5C_associated_SNPs_12498 0 0 0 2 44834388 44834409 mRNA hsa-miR-135b NSF miRanda miRanda
1356 chr17 46058901 46058901 1 + C T rs112342224 46058895 + 46058875 46058915 41 CCGTGTTCTTGCCTGCCCATCTTCTCCGCTTTTGGGATGAA CCGTGTTCTTGCCTGCCCATCTTCTCTGCTTTTGGGATGAA < 41bp 1 0.114564513849748 1 0.105311751365662 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK5RAP3 ENSG00000264701 ncRNA_intronic Human antisense chr17:46058895 chr17:46058901 . . 0 27 hm5C_associated_SNPs_12504 0 0 1 1 46058880 46058902 mRNA hsa-miR-185 CDK5RAP3 miRanda miRanda
1357 chr17 46058901 46058901 1 + C T rs112342224 46058898 + 46058878 46058918 41 TGTTCTTGCCTGCCCATCTTCTCCGCTTTTGGGATGAAGAT TGTTCTTGCCTGCCCATCTTCTCTGCTTTTGGGATGAAGAT < 41bp 1 0.312143268607708 1 0.245404005050659 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CDK5RAP3 ENSG00000264701 ncRNA_intronic Human antisense chr17:46058898 chr17:46058901 . . 0 24 hm5C_associated_SNPs_12505 0 0 1 1 46058880 46058902 mRNA hsa-miR-185 CDK5RAP3 miRanda miRanda
1358 chr17 46199240 46199240 1 + C T rs182437136 46199224 + 46199204 46199244 41 CGTATGTGGCAAATTCTAAGCTGCCATATTGAACATCATCC CGTATGTGGCAAATTCTAAGCTGCCATATTGAACATTATCC < 41bp 1 0.419733036129102 1 0.124044448137283 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX11 ENSG00000002919 UTR3 Human protein_coding chr17:46199224 chr17:46199240 . . 0 37 hm5C_associated_SNPs_12508 0 0 1 2 46199222 46199244 mRNA hsa-miR-190 SNX11 miRanda miRanda
1359 chr17 46199240 46199240 1 + C T rs182437136 46199224 + 46199204 46199244 41 CGTATGTGGCAAATTCTAAGCTGCCATATTGAACATCATCC CGTATGTGGCAAATTCTAAGCTGCCATATTGAACATTATCC < 41bp 1 0.419733036129102 1 0.124044448137283 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX11 ENSG00000002919 UTR3 Human protein_coding chr17:46199224 chr17:46199240 . . 0 37 hm5C_associated_SNPs_12508 0 0 1 2 46199223 46199244 mRNA hsa-miR-190b SNX11 miRanda miRanda
1360 chr17 46940600 46940600 1 + C T rs111623438 46940590 + 46940570 46940610 41 TTTAAGTCGCATAACTCTAGCTGTATCATCCTCTCACCTGT TTTAAGTCGCATAACTCTAGCTGTATCATCTTCTCACCTGT < 41bp 1 0.67244268309204 1 0.161437928676605 experiment 0.655114633815919 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CALCOCO2 ENSG00000136436 UTR3 Human protein_coding chr17:46940590 chr17:46940600 . . 0 31 hm5C_associated_SNPs_12512 0 0 1 2 46940581 46940603 mRNA hsa-miR-143 CALCOCO2 miRanda miRanda
1361 chr17 46940600 46940600 1 + C T rs111623438 46940590 + 46940570 46940610 41 TTTAAGTCGCATAACTCTAGCTGTATCATCCTCTCACCTGT TTTAAGTCGCATAACTCTAGCTGTATCATCTTCTCACCTGT < 41bp 1 0.67244268309204 1 0.161437928676605 experiment 0.655114633815919 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CALCOCO2 ENSG00000136436 UTR3 Human protein_coding chr17:46940590 chr17:46940600 . . 0 31 hm5C_associated_SNPs_12512 0 0 1 2 46940589 46940610 mRNA hsa-miR-125a-3p CALCOCO2 miRanda miRanda
1362 chr17 48165720 48165720 1 + G A rs140614661 48165705 + 48165685 48165725 41 ACCGACGACTACTGAGGGGGCAGCCCCCCGCCCCCGGCCCA ACCGACGACTACTGAGGGGGCAGCCCCCCGCCCCCAGCCCA < 41bp 1 0.308478850792528 1 0.37536546587944 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165705 chr17:48165720 . . 0 36 hm5C_associated_SNPs_12527 0 0 1 1 48165716 48165730 mRNA hsa-miR-224 ITGA3 miRanda miRanda
1363 chr17 48165720 48165720 1 + G A rs140614661 48165715 + 48165695 48165735 41 ACTGAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAAC ACTGAGGGGGCAGCCCCCCGCCCCCAGCCCACCTGGGTAAC < 41bp 1 0.205398342768339 1 0.28998327255249 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165715 chr17:48165720 . . 0 26 hm5C_associated_SNPs_12528 0 0 1 1 48165716 48165730 mRNA hsa-miR-224 ITGA3 miRanda miRanda
1364 chr17 48165720 48165720 1 + G A rs140614661 48165716 + 48165696 48165736 41 CTGAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACA CTGAGGGGGCAGCCCCCCGCCCCCAGCCCACCTGGGTAACA < 41bp 1 0.395038255975863 1 0.181744158267975 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165716 chr17:48165720 . . 0 25 hm5C_associated_SNPs_12529 0 0 1 1 48165716 48165730 mRNA hsa-miR-224 ITGA3 miRanda miRanda
1365 chr17 48165720 48165720 1 + G A rs140614661 48165717 + 48165697 48165737 41 TGAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACAC TGAGGGGGCAGCCCCCCGCCCCCAGCCCACCTGGGTAACAC < 41bp 1 0.214363814719171 1 0.139705985784531 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165717 chr17:48165720 . . 0 24 hm5C_associated_SNPs_12530 0 0 1 1 48165716 48165730 mRNA hsa-miR-224 ITGA3 miRanda miRanda
1366 chr17 48165720 48165720 1 + G A rs140614661 48165718 + 48165698 48165738 41 GAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACACG GAGGGGGCAGCCCCCCGCCCCCAGCCCACCTGGGTAACACG < 41bp 1 0.0842942134315326 1 0.124434351921082 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165718 chr17:48165720 . . 0 23 hm5C_associated_SNPs_12531 0 0 1 1 48165716 48165730 mRNA hsa-miR-224 ITGA3 miRanda miRanda
1367 chr17 48165720 48165720 1 + G A rs140614661 48165719 + 48165699 48165739 41 AGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACACGG AGGGGGCAGCCCCCCGCCCCCAGCCCACCTGGGTAACACGG < 41bp 1 0.325604499575811 1 0.791081368923187 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165719 chr17:48165720 . . 0 22 hm5C_associated_SNPs_12532 0 0 1 1 48165716 48165730 mRNA hsa-miR-224 ITGA3 miRanda miRanda
1368 chr17 53852178 53852178 1 + G A rs79806530 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCGATAACCCAGGTGGCCAAATTCCGTCCTGGCTCATT < 41bp 1 0.265355306488145 1 0.194811552762985 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852178 synonymous SNV . 0 14 hm5C_associated_SNPs_12549 0 0 1 1 53852176 53852197 mRNA hsa-miR-184 PCTP miRanda miRanda
1369 chr17 55191921 55191921 1 + G A rs73317574 55191920 + 55191900 55191940 41 CACACACCCTACCTTCCACGCGCTGCGCAGCCTCGACCAGC CACACACCCTACCTTCCACGCACTGCGCAGCCTCGACCAGC < 41bp 1 0.218980705267286 1 0.0294417142868042 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55191920 chr17:55191921 synonymous SNV . 0 22 hm5C_associated_SNPs_12555 0 0 1 1 55191910 55191934 mRNA hsa-miR-485-5p AKAP1 miRanda miRanda
1370 chr17 62223750 62223750 1 + T G rs554830608 62223735 + 62223715 62223755 41 CCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAATCTGCAGC CCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAATCGGCAGC < 41bp 1 0.681650411269548 1 0.120034992694855 experiment 0.636699177460904 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223735 chr17:62223750 . . 0 36 hm5C_associated_SNPs_12580 0 0 1 1 62223744 62223763 lncRNA hsa-miR-1251-5p SNHG25 miRanda starBase2
1371 chr17 62223750 62223750 1 + T G rs554830608 62223745 + 62223725 62223765 41 TTCCTCGTGGCGCCGGGGGTCAATCTGCAGCGCTAGAGCAT TTCCTCGTGGCGCCGGGGGTCAATCGGCAGCGCTAGAGCAT < 41bp 1 0.262570863190749 1 0.237588882446289 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223745 chr17:62223750 . . 0 26 hm5C_associated_SNPs_12581 0 0 1 1 62223744 62223763 lncRNA hsa-miR-1251-5p SNHG25 miRanda starBase2
1372 chr17 62223750 62223750 1 + T G rs554830608 62223763 + 62223743 62223783 41 GTCAATCTGCAGCGCTAGAGCATGTGCTTGCGCATAACTGG GTCAATCGGCAGCGCTAGAGCATGTGCTTGCGCATAACTGG < 41bp 1 0.619562610694655 1 0.483423382043839 experiment 0.76087477861069 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223763 chr17:62223750 . . 0 8 hm5C_associated_SNPs_12582 0 0 1 1 62223744 62223763 lncRNA hsa-miR-1251-5p SNHG25 miRanda starBase2
1373 chr17 62223750 62223750 1 + T G rs554830608 62223769 + 62223749 62223789 41 CTGCAGCGCTAGAGCATGTGCTTGCGCATAACTGGGGCCGC CGGCAGCGCTAGAGCATGTGCTTGCGCATAACTGGGGCCGC < 41bp 1 0.326904512602687 1 0.137423753738403 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223769 chr17:62223750 . . 0 2 hm5C_associated_SNPs_12583 0 0 1 1 62223744 62223763 lncRNA hsa-miR-1251-5p SNHG25 miRanda starBase2
1374 chr17 66527802 66527802 1 + T A rs8905 66527809 + 66527789 66527829 41 AAGGCTATCCTGCTGAAAGTCCTGCTTTCCTATCTAGCATT AAGGCTATCCTGCAGAAAGTCCTGCTTTCCTATCTAGCATT < 41bp 1 0.104457204294905 1 0.049899697303772 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527809 chr17:66527802 . . 0 14 hm5C_associated_SNPs_12596 0 0 1 1 66527784 66527804 mRNA hsa-miR-214 PRKAR1A miRanda miRanda
1375 chr17 66527802 66527802 1 + T A rs8905 66527810 + 66527790 66527830 41 AGGCTATCCTGCTGAAAGTCCTGCTTTCCTATCTAGCATTT AGGCTATCCTGCAGAAAGTCCTGCTTTCCTATCTAGCATTT < 41bp 1 0.403204580029331 1 0.066148966550827 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527810 chr17:66527802 . . 0 13 hm5C_associated_SNPs_12597 0 0 1 1 66527784 66527804 mRNA hsa-miR-214 PRKAR1A miRanda miRanda
1376 chr17 66527802 66527802 1 + T A rs8905 66527813 + 66527793 66527833 41 CTATCCTGCTGAAAGTCCTGCTTTCCTATCTAGCATTTATT CTATCCTGCAGAAAGTCCTGCTTTCCTATCTAGCATTTATT < 41bp 1 0.0111947816061467 1 0.035890519618988 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527813 chr17:66527802 . . 0 10 hm5C_associated_SNPs_12598 0 0 1 1 66527784 66527804 mRNA hsa-miR-214 PRKAR1A miRanda miRanda
1377 chr17 66527802 66527802 1 + T A rs8905 66527817 + 66527797 66527837 41 CCTGCTGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTC CCTGCAGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTC < 41bp 1 0.0597860929580145 1 0.0829612612724304 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527817 chr17:66527802 . . 0 6 hm5C_associated_SNPs_12599 0 0 1 1 66527784 66527804 mRNA hsa-miR-214 PRKAR1A miRanda miRanda
1378 chr17 66527802 66527802 1 + T A rs8905 66527818 + 66527798 66527838 41 CTGCTGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTCT CTGCAGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTCT < 41bp 1 0.120289650042029 1 0.291931480169296 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527818 chr17:66527802 . . 0 5 hm5C_associated_SNPs_12600 0 0 1 1 66527784 66527804 mRNA hsa-miR-214 PRKAR1A miRanda miRanda
1379 chr17 66527802 66527802 1 + T A rs8905 66527822 + 66527802 66527842 41 TGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTCTGGCA AGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTCTGGCA < 41bp 1 0.330707451434861 1 0.345486104488373 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527822 chr17:66527802 . . 0 1 hm5C_associated_SNPs_12601 0 0 1 1 66527784 66527804 mRNA hsa-miR-214 PRKAR1A miRanda miRanda
1380 chr17 66527834 66527834 1 + T C rs9925 66527817 + 66527797 66527837 41 CCTGCTGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTC CCTGCTGAAAGTCCTGCTTTCCTATCTAGCATTTATTCCTC < 41bp 1 0.0642365032873785 1 0.0381206572055817 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527817 chr17:66527834 . . 0 38 hm5C_associated_SNPs_12602 2 0 1 1 66527816 66527838 mRNA hsa-miR-539 PRKAR1A miRanda miRanda
1381 chr17 66527834 66527834 1 + T C rs9925 66527818 + 66527798 66527838 41 CTGCTGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTCT CTGCTGAAAGTCCTGCTTTCCTATCTAGCATTTATTCCTCT < 41bp 1 0.118660467085364 1 0.258398205041885 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527818 chr17:66527834 . . 0 37 hm5C_associated_SNPs_12603 2 0 1 1 66527816 66527838 mRNA hsa-miR-539 PRKAR1A miRanda miRanda
1382 chr17 66527834 66527834 1 + T C rs9925 66527822 + 66527802 66527842 41 TGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTCTGGCA TGAAAGTCCTGCTTTCCTATCTAGCATTTATTCCTCTGGCA < 41bp 1 0.322419978841385 1 0.214265257120132 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527822 chr17:66527834 . . 0 33 hm5C_associated_SNPs_12604 2 0 1 1 66527816 66527838 mRNA hsa-miR-539 PRKAR1A miRanda miRanda
1383 chr17 66527834 66527834 1 + T C rs9925 66527826 + 66527806 66527846 41 AGTCCTGCTTTCCTATCTAGCATTTATTTCTCTGGCAAACT AGTCCTGCTTTCCTATCTAGCATTTATTCCTCTGGCAAACT < 41bp 1 0.053540750520773 1 0.0245177447795868 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527826 chr17:66527834 . . 0 29 hm5C_associated_SNPs_12605 2 0 1 1 66527816 66527838 mRNA hsa-miR-539 PRKAR1A miRanda miRanda
1384 chr17 66527834 66527834 1 + T C rs9925 66527835 + 66527815 66527855 41 TTCCTATCTAGCATTTATTTCTCTGGCAAACTTTTCTTTCT TTCCTATCTAGCATTTATTCCTCTGGCAAACTTTTCTTTCT < 41bp 1 0.260061758527175 1 0.29530268907547 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527835 chr17:66527834 . . 0 20 hm5C_associated_SNPs_12606 2 0 1 1 66527816 66527838 mRNA hsa-miR-539 PRKAR1A miRanda miRanda
1385 chr17 66527834 66527834 1 + T C rs9925 66527837 + 66527817 66527857 41 CCTATCTAGCATTTATTTCTCTGGCAAACTTTTCTTTCTTT CCTATCTAGCATTTATTCCTCTGGCAAACTTTTCTTTCTTT < 41bp 1 0.384637624744771 1 0.744376182556152 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527837 chr17:66527834 . . 0 18 hm5C_associated_SNPs_12607 2 0 1 1 66527816 66527838 mRNA hsa-miR-539 PRKAR1A miRanda miRanda
1386 chr17 66527834 66527834 1 + T C rs9925 66527841 + 66527821 66527861 41 TCTAGCATTTATTTCTCTGGCAAACTTTTCTTTCTTTTCTT TCTAGCATTTATTCCTCTGGCAAACTTTTCTTTCTTTTCTT < 41bp 1 0.161435947819117 1 0.346236884593964 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527841 chr17:66527834 . . 0 14 hm5C_associated_SNPs_12608 2 0 1 1 66527816 66527838 mRNA hsa-miR-539 PRKAR1A miRanda miRanda
1387 chr17 73060052 73060052 1 + T C rs186879104 73060062 + 73060042 73060082 41 GCTGTTTCTTTGAAAGTTGCCAAATGTGTTATGTTGTGTCT GCTGTTTCTTCGAAAGTTGCCAAATGTGTTATGTTGTGTCT < 41bp 1 0.311538153098922 1 0.914053320884705 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control KCTD2 ENSG00000180901 UTR3 Human protein_coding chr17:73060062 chr17:73060052 . . 0 11 hm5C_associated_SNPs_12642 0 0 1 2 73060042 73060065 mRNA hsa-miR-182 KCTD2 miRanda miRanda
1388 chr17 73060052 73060052 1 + T C rs186879104 73060062 + 73060042 73060082 41 GCTGTTTCTTTGAAAGTTGCCAAATGTGTTATGTTGTGTCT GCTGTTTCTTCGAAAGTTGCCAAATGTGTTATGTTGTGTCT < 41bp 1 0.311538153098922 1 0.914053320884705 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control KCTD2 ENSG00000180901 UTR3 Human protein_coding chr17:73060062 chr17:73060052 . . 0 11 hm5C_associated_SNPs_12642 0 0 1 2 73060052 73060077 mRNA hsa-miR-495 KCTD2 miRanda miRanda
1389 chr17 73060073 73060073 1 + T A rs11077773 73060062 + 73060042 73060082 41 GCTGTTTCTTTGAAAGTTGCCAAATGTGTTATGTTGTGTCT GCTGTTTCTTTGAAAGTTGCCAAATGTGTTAAGTTGTGTCT < 41bp 1 0.28403294196186 1 0.878129959106445 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control KCTD2 ENSG00000180901 UTR3 Human protein_coding chr17:73060062 chr17:73060073 . . 0 32 hm5C_associated_SNPs_12643 0 1 1 1 73060052 73060077 mRNA hsa-miR-495 KCTD2 miRanda miRanda
1390 chr17 74557211 74557211 1 + A C rs16969028 74557218 + 74557198 74557238 41 CATGATGATTTCAAGTTATCCCTGTCTGAAGGCAAAGAAAG CATGATGATTTCACGTTATCCCTGTCTGAAGGCAAAGAAAG < 41bp 1 0.0946191361264457 1 0.048850953578949 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1B ENSG00000199961 ncRNA_exonic Human snoRNA chr17:74557218 chr17:74557211 . . 0 14 hm5C_associated_SNPs_12670 0 0 1 1 74557204 74557227 mRNA hsa-miR-421 SNORD1B miRanda miRanda
1391 chr17 74557211 74557211 1 + A C rs16969028 74557219 + 74557199 74557239 41 ATGATGATTTCAAGTTATCCCTGTCTGAAGGCAAAGAAAGG ATGATGATTTCACGTTATCCCTGTCTGAAGGCAAAGAAAGG < 41bp 1 0.117886172698094 1 0.0701704025268555 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1B ENSG00000199961 ncRNA_exonic Human snoRNA chr17:74557219 chr17:74557211 . . 0 13 hm5C_associated_SNPs_12671 0 0 1 1 74557204 74557227 mRNA hsa-miR-421 SNORD1B miRanda miRanda
1392 chr17 74557211 74557211 1 + A C rs16969028 74557230 + 74557210 74557250 41 AAGTTATCCCTGTCTGAAGGCAAAGAAAGGCCTTTCTGTGT ACGTTATCCCTGTCTGAAGGCAAAGAAAGGCCTTTCTGTGT < 41bp 1 0.300869750797145 1 0.339674115180969 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1B ENSG00000199961 ncRNA_exonic Human snoRNA chr17:74557230 chr17:74557211 . . 0 2 hm5C_associated_SNPs_12672 0 0 1 1 74557204 74557227 mRNA hsa-miR-421 SNORD1B miRanda miRanda
1393 chr17 75085434 75085434 1 + G A rs2678770 75085422 + 75085402 75085442 41 AGGCTCCTGTGTTGTTGAGCCTGCCAAGTTGTGGGTGCAGC AGGCTCCTGTGTTGTTGAGCCTGCCAAGTTGTAGGTGCAGC < 41bp 1 0.191200862769069 1 0.110502511262894 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA16 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75085422 chr17:75085434 . . 0 33 hm5C_associated_SNPs_12683 0 0 1 1 75085432 75085454 mRNA hsa-miR-486-5p SCARNA16 miRanda miRanda
1394 chr17 75085434 75085434 1 + G A rs2678770 75085425 + 75085405 75085445 41 CTCCTGTGTTGTTGAGCCTGCCAAGTTGTGGGTGCAGCATG CTCCTGTGTTGTTGAGCCTGCCAAGTTGTAGGTGCAGCATG < 41bp 1 0.14384080520067 1 0.384666502475739 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA16 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75085425 chr17:75085434 . . 0 30 hm5C_associated_SNPs_12684 0 0 1 1 75085432 75085454 mRNA hsa-miR-486-5p SCARNA16 miRanda miRanda
1395 chr17 75085434 75085434 1 + G A rs2678770 75085426 + 75085406 75085446 41 TCCTGTGTTGTTGAGCCTGCCAAGTTGTGGGTGCAGCATGG TCCTGTGTTGTTGAGCCTGCCAAGTTGTAGGTGCAGCATGG < 41bp 1 0.322964153074747 1 0.483523964881897 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA16 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75085426 chr17:75085434 . . 0 29 hm5C_associated_SNPs_12685 0 0 1 1 75085432 75085454 mRNA hsa-miR-486-5p SCARNA16 miRanda miRanda
1396 chr17 75085434 75085434 1 + G A rs2678770 75085439 + 75085419 75085459 41 AGCCTGCCAAGTTGTGGGTGCAGCATGGTACCAGGCAGCCC AGCCTGCCAAGTTGTAGGTGCAGCATGGTACCAGGCAGCCC < 41bp 1 0.554967426388114 1 0.306269228458405 experiment 0.890065147223773 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA16 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75085439 chr17:75085434 . . 0 16 hm5C_associated_SNPs_12686 0 0 1 1 75085432 75085454 mRNA hsa-miR-486-5p SCARNA16 miRanda miRanda
1397 chr17 75085434 75085434 1 + G A rs2678770 75085449 + 75085429 75085469 41 GTTGTGGGTGCAGCATGGTACCAGGCAGCCCAACCCTGACC GTTGTAGGTGCAGCATGGTACCAGGCAGCCCAACCCTGACC < 41bp 1 0.38022598764564 1 0.290946245193481 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA16 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75085449 chr17:75085434 . . 0 6 hm5C_associated_SNPs_12687 0 0 1 1 75085432 75085454 mRNA hsa-miR-486-5p SCARNA16 miRanda miRanda
1398 chr17 75085434 75085434 1 + G A rs2678770 75085454 + 75085434 75085474 41 GGGTGCAGCATGGTACCAGGCAGCCCAACCCTGACCTAAAG AGGTGCAGCATGGTACCAGGCAGCCCAACCCTGACCTAAAG < 41bp 1 0.351227895827462 1 0.35416167974472 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA16 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75085454 chr17:75085434 . . 0 1 hm5C_associated_SNPs_12688 0 0 1 1 75085432 75085454 mRNA hsa-miR-486-5p SCARNA16 miRanda miRanda
1399 chr18 13095654 13095654 1 + A G rs79702541 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCT < 41bp 1 0.211410962957357 1 0.232764035463333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095654 nonsynonymous SNV 0.132 0 22 hm5C_associated_SNPs_12894 0 0 1 14 13095651 13095674 mRNA hsa-miR-28-5p CEP192 miRanda miRanda
1400 chr18 13095654 13095654 1 + A G rs79702541 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCT < 41bp 1 0.211410962957357 1 0.232764035463333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095654 nonsynonymous SNV 0.132 0 22 hm5C_associated_SNPs_12894 0 0 1 14 13095636 13095658 mRNA hsa-miR-302a CEP192 miRanda miRanda
1401 chr18 13095654 13095654 1 + A G rs79702541 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCT < 41bp 1 0.211410962957357 1 0.232764035463333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095654 nonsynonymous SNV 0.132 0 22 hm5C_associated_SNPs_12894 0 0 1 14 13095636 13095658 mRNA hsa-miR-302b CEP192 miRanda miRanda
1402 chr18 13095654 13095654 1 + A G rs79702541 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCT < 41bp 1 0.211410962957357 1 0.232764035463333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095654 nonsynonymous SNV 0.132 0 22 hm5C_associated_SNPs_12894 0 0 1 14 13095636 13095658 mRNA hsa-miR-302c CEP192 miRanda miRanda
1403 chr18 13095654 13095654 1 + A G rs79702541 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCT < 41bp 1 0.211410962957357 1 0.232764035463333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095654 nonsynonymous SNV 0.132 0 22 hm5C_associated_SNPs_12894 0 0 1 14 13095636 13095658 mRNA hsa-miR-302d CEP192 miRanda miRanda
1404 chr18 13095654 13095654 1 + A G rs79702541 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCT < 41bp 1 0.211410962957357 1 0.232764035463333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095654 nonsynonymous SNV 0.132 0 22 hm5C_associated_SNPs_12894 0 0 1 14 13095637 13095658 mRNA hsa-miR-372 CEP192 miRanda miRanda
1405 chr18 13095654 13095654 1 + A G rs79702541 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCT < 41bp 1 0.211410962957357 1 0.232764035463333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095654 nonsynonymous SNV 0.132 0 22 hm5C_associated_SNPs_12894 0 0 1 14 13095636 13095658 mRNA hsa-miR-373 CEP192 miRanda miRanda
1406 chr18 13095654 13095654 1 + A G rs79702541 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCT < 41bp 1 0.211410962957357 1 0.232764035463333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095654 nonsynonymous SNV 0.132 0 22 hm5C_associated_SNPs_12894 0 0 1 14 13095638 13095658 mRNA hsa-miR-520e CEP192 miRanda miRanda
1407 chr18 13095654 13095654 1 + A G rs79702541 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCT < 41bp 1 0.211410962957357 1 0.232764035463333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095654 nonsynonymous SNV 0.132 0 22 hm5C_associated_SNPs_12894 0 0 1 14 13095638 13095658 mRNA hsa-miR-520a-3p CEP192 miRanda miRanda
1408 chr18 13095654 13095654 1 + A G rs79702541 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCT < 41bp 1 0.211410962957357 1 0.232764035463333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095654 nonsynonymous SNV 0.132 0 22 hm5C_associated_SNPs_12894 0 0 1 14 13095638 13095658 mRNA hsa-miR-520b CEP192 miRanda miRanda
1409 chr18 13095654 13095654 1 + A G rs79702541 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCT < 41bp 1 0.211410962957357 1 0.232764035463333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095654 nonsynonymous SNV 0.132 0 22 hm5C_associated_SNPs_12894 0 0 1 14 13095637 13095658 mRNA hsa-miR-520c-3p CEP192 miRanda miRanda
1410 chr18 13095654 13095654 1 + A G rs79702541 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCT < 41bp 1 0.211410962957357 1 0.232764035463333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095654 nonsynonymous SNV 0.132 0 22 hm5C_associated_SNPs_12894 0 0 1 14 13095637 13095658 mRNA hsa-miR-520d-3p CEP192 miRanda miRanda
1411 chr18 13095654 13095654 1 + A G rs79702541 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCT < 41bp 1 0.211410962957357 1 0.232764035463333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095654 nonsynonymous SNV 0.132 0 22 hm5C_associated_SNPs_12894 0 0 1 14 13095651 13095674 mRNA hsa-miR-708 CEP192 miRanda miRanda
1412 chr18 13095654 13095654 1 + A G rs79702541 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCT < 41bp 1 0.211410962957357 1 0.232764035463333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095654 nonsynonymous SNV 0.132 0 22 hm5C_associated_SNPs_12894 0 0 1 14 13095642 13095658 mRNA hsa-miR-302e CEP192 miRanda miRanda
1413 chr18 13095654 13095654 1 + A G rs79702541 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCTTC < 41bp 1 0.553290076721899 1 0.236833572387695 experiment 0.893419846556202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095654 nonsynonymous SNV 0.132 0 20 hm5C_associated_SNPs_12895 0 0 1 14 13095651 13095674 mRNA hsa-miR-28-5p CEP192 miRanda miRanda
1414 chr18 13095654 13095654 1 + A G rs79702541 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCTTC < 41bp 1 0.553290076721899 1 0.236833572387695 experiment 0.893419846556202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095654 nonsynonymous SNV 0.132 0 20 hm5C_associated_SNPs_12895 0 0 1 14 13095636 13095658 mRNA hsa-miR-302a CEP192 miRanda miRanda
1415 chr18 13095654 13095654 1 + A G rs79702541 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCTTC < 41bp 1 0.553290076721899 1 0.236833572387695 experiment 0.893419846556202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095654 nonsynonymous SNV 0.132 0 20 hm5C_associated_SNPs_12895 0 0 1 14 13095636 13095658 mRNA hsa-miR-302b CEP192 miRanda miRanda
1416 chr18 13095654 13095654 1 + A G rs79702541 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCTTC < 41bp 1 0.553290076721899 1 0.236833572387695 experiment 0.893419846556202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095654 nonsynonymous SNV 0.132 0 20 hm5C_associated_SNPs_12895 0 0 1 14 13095636 13095658 mRNA hsa-miR-302c CEP192 miRanda miRanda
1417 chr18 13095654 13095654 1 + A G rs79702541 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCTTC < 41bp 1 0.553290076721899 1 0.236833572387695 experiment 0.893419846556202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095654 nonsynonymous SNV 0.132 0 20 hm5C_associated_SNPs_12895 0 0 1 14 13095636 13095658 mRNA hsa-miR-302d CEP192 miRanda miRanda
1418 chr18 13095654 13095654 1 + A G rs79702541 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCTTC < 41bp 1 0.553290076721899 1 0.236833572387695 experiment 0.893419846556202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095654 nonsynonymous SNV 0.132 0 20 hm5C_associated_SNPs_12895 0 0 1 14 13095637 13095658 mRNA hsa-miR-372 CEP192 miRanda miRanda
1419 chr18 13095654 13095654 1 + A G rs79702541 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCTTC < 41bp 1 0.553290076721899 1 0.236833572387695 experiment 0.893419846556202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095654 nonsynonymous SNV 0.132 0 20 hm5C_associated_SNPs_12895 0 0 1 14 13095636 13095658 mRNA hsa-miR-373 CEP192 miRanda miRanda
1420 chr18 13095654 13095654 1 + A G rs79702541 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCTTC < 41bp 1 0.553290076721899 1 0.236833572387695 experiment 0.893419846556202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095654 nonsynonymous SNV 0.132 0 20 hm5C_associated_SNPs_12895 0 0 1 14 13095638 13095658 mRNA hsa-miR-520e CEP192 miRanda miRanda
1421 chr18 13095654 13095654 1 + A G rs79702541 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCTTC < 41bp 1 0.553290076721899 1 0.236833572387695 experiment 0.893419846556202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095654 nonsynonymous SNV 0.132 0 20 hm5C_associated_SNPs_12895 0 0 1 14 13095638 13095658 mRNA hsa-miR-520a-3p CEP192 miRanda miRanda
1422 chr18 13095654 13095654 1 + A G rs79702541 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCTTC < 41bp 1 0.553290076721899 1 0.236833572387695 experiment 0.893419846556202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095654 nonsynonymous SNV 0.132 0 20 hm5C_associated_SNPs_12895 0 0 1 14 13095638 13095658 mRNA hsa-miR-520b CEP192 miRanda miRanda
1423 chr18 13095654 13095654 1 + A G rs79702541 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCTTC < 41bp 1 0.553290076721899 1 0.236833572387695 experiment 0.893419846556202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095654 nonsynonymous SNV 0.132 0 20 hm5C_associated_SNPs_12895 0 0 1 14 13095637 13095658 mRNA hsa-miR-520c-3p CEP192 miRanda miRanda
1424 chr18 13095654 13095654 1 + A G rs79702541 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCTTC < 41bp 1 0.553290076721899 1 0.236833572387695 experiment 0.893419846556202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095654 nonsynonymous SNV 0.132 0 20 hm5C_associated_SNPs_12895 0 0 1 14 13095637 13095658 mRNA hsa-miR-520d-3p CEP192 miRanda miRanda
1425 chr18 13095654 13095654 1 + A G rs79702541 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCTTC < 41bp 1 0.553290076721899 1 0.236833572387695 experiment 0.893419846556202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095654 nonsynonymous SNV 0.132 0 20 hm5C_associated_SNPs_12895 0 0 1 14 13095651 13095674 mRNA hsa-miR-708 CEP192 miRanda miRanda
1426 chr18 13095654 13095654 1 + A G rs79702541 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCTTC < 41bp 1 0.553290076721899 1 0.236833572387695 experiment 0.893419846556202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095654 nonsynonymous SNV 0.132 0 20 hm5C_associated_SNPs_12895 0 0 1 14 13095642 13095658 mRNA hsa-miR-302e CEP192 miRanda miRanda
1427 chr18 21594977 21594977 1 + T A rs548200876 21594978 + 21594958 21594998 41 CAACAACGGCTTCAGGGAGTCGGACCAGCTTTTCAAACAAT CAACAACGGCTTCAGGGAGACGGACCAGCTTTTCAAACAAT < 41bp 1 0.227344201557504 1 0.472558230161667 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control TTC39C ENSG00000168234 CDS Human protein_coding chr18:21594978 chr18:21594977 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_12911 0 0 1 4 21594969 21594990 mRNA hsa-miR-320a TTC39C miRanda miRanda
1428 chr18 21594977 21594977 1 + T A rs548200876 21594978 + 21594958 21594998 41 CAACAACGGCTTCAGGGAGTCGGACCAGCTTTTCAAACAAT CAACAACGGCTTCAGGGAGACGGACCAGCTTTTCAAACAAT < 41bp 1 0.227344201557504 1 0.472558230161667 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control TTC39C ENSG00000168234 CDS Human protein_coding chr18:21594978 chr18:21594977 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_12911 0 0 1 4 21594969 21594990 mRNA hsa-miR-320b TTC39C miRanda miRanda
1429 chr18 21594977 21594977 1 + T A rs548200876 21594978 + 21594958 21594998 41 CAACAACGGCTTCAGGGAGTCGGACCAGCTTTTCAAACAAT CAACAACGGCTTCAGGGAGACGGACCAGCTTTTCAAACAAT < 41bp 1 0.227344201557504 1 0.472558230161667 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control TTC39C ENSG00000168234 CDS Human protein_coding chr18:21594978 chr18:21594977 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_12911 0 0 1 4 21594971 21594990 mRNA hsa-miR-320c TTC39C miRanda miRanda
1430 chr18 21594977 21594977 1 + T A rs548200876 21594978 + 21594958 21594998 41 CAACAACGGCTTCAGGGAGTCGGACCAGCTTTTCAAACAAT CAACAACGGCTTCAGGGAGACGGACCAGCTTTTCAAACAAT < 41bp 1 0.227344201557504 1 0.472558230161667 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control TTC39C ENSG00000168234 CDS Human protein_coding chr18:21594978 chr18:21594977 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_12911 0 0 1 4 21594972 21594990 mRNA hsa-miR-320d TTC39C miRanda miRanda
1431 chr18 54694456 54694456 1 + G A rs77321591 54694463 + 54694443 54694483 41 GCTGCCTGCCGCCGTGACTGCGTTTTAGTTCTCTAAATTAT GCTGCCTGCCGCCATGACTGCGTTTTAGTTCTCTAAATTAT < 41bp 1 0.067194295739767 1 0.101187437772751 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR7 ENSG00000091157 UTR3 Human protein_coding chr18:54694463 chr18:54694456 . . 0 14 hm5C_associated_SNPs_12953 0 0 0 2 54694455 54694476 mRNA hsa-miR-146a WDR7 miRanda miRanda
1432 chr18 54694456 54694456 1 + G A rs77321591 54694463 + 54694443 54694483 41 GCTGCCTGCCGCCGTGACTGCGTTTTAGTTCTCTAAATTAT GCTGCCTGCCGCCATGACTGCGTTTTAGTTCTCTAAATTAT < 41bp 1 0.067194295739767 1 0.101187437772751 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR7 ENSG00000091157 UTR3 Human protein_coding chr18:54694463 chr18:54694456 . . 0 14 hm5C_associated_SNPs_12953 0 0 0 2 54694455 54694476 mRNA hsa-miR-146b-5p WDR7 miRanda miRanda
1433 chr18 77730663 77730663 1 + T G rs113959961 77730660 + 77730640 77730680 41 AGAAATCACACGGACCAGCACCTTGATCTGGGACTTCCAGA AGAAATCACACGGACCAGCACCTGGATCTGGGACTTCCAGA < 41bp 1 0.522587060672585 1 0.0490711629390717 experiment 0.954825878654829 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSBP1L1 ENSG00000226742 UTR3 Human protein_coding chr18:77730660 chr18:77730663 . . 0 24 hm5C_associated_SNPs_12973 0 0 1 2 77730642 77730664 mRNA hsa-miR-18a HSBP1L1 miRanda miRanda
1434 chr18 77730663 77730663 1 + T G rs113959961 77730660 + 77730640 77730680 41 AGAAATCACACGGACCAGCACCTTGATCTGGGACTTCCAGA AGAAATCACACGGACCAGCACCTGGATCTGGGACTTCCAGA < 41bp 1 0.522587060672585 1 0.0490711629390717 experiment 0.954825878654829 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSBP1L1 ENSG00000226742 UTR3 Human protein_coding chr18:77730660 chr18:77730663 . . 0 24 hm5C_associated_SNPs_12973 0 0 1 2 77730641 77730664 mRNA hsa-miR-18b HSBP1L1 miRanda miRanda
1435 chr19 580388 580388 1 + C A rs2229664 580385 + 580365 580405 41 TGCTGTGGTTGCAGGGTGGACTCCGACGACCAGTGGGGAGA TGCTGTGGTTGCAGGGTGGACTCAGACGACCAGTGGGGAGA < 41bp 1 0.473607801111871 1 0.284375190734863 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580385 chr19:580388 synonymous SNV . 0 24 hm5C_associated_SNPs_13001 0 0 1 1 580379 580390 mRNA hsa-miR-127-3p BSG miRanda miRanda
1436 chr19 580388 580388 1 + C A rs2229664 580387 + 580367 580407 41 CTGTGGTTGCAGGGTGGACTCCGACGACCAGTGGGGAGAGT CTGTGGTTGCAGGGTGGACTCAGACGACCAGTGGGGAGAGT < 41bp 1 0.494862987823132 1 0.40036016702652 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580387 chr19:580388 synonymous SNV . 0 22 hm5C_associated_SNPs_13002 0 0 1 1 580379 580390 mRNA hsa-miR-127-3p BSG miRanda miRanda
1437 chr19 580388 580388 1 + C A rs2229664 580394 + 580374 580414 41 TGCAGGGTGGACTCCGACGACCAGTGGGGAGAGTACTCCTG TGCAGGGTGGACTCAGACGACCAGTGGGGAGAGTACTCCTG < 41bp 1 0.444087628296082 1 0.143410235643387 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580394 chr19:580388 synonymous SNV . 0 15 hm5C_associated_SNPs_13003 0 0 1 1 580379 580390 mRNA hsa-miR-127-3p BSG miRanda miRanda
1438 chr19 580389 580389 1 + G C rs202113312 580385 + 580365 580405 41 TGCTGTGGTTGCAGGGTGGACTCCGACGACCAGTGGGGAGA TGCTGTGGTTGCAGGGTGGACTCCCACGACCAGTGGGGAGA < 41bp 1 0.278959497568888 1 0.117996662855148 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580385 chr19:580389 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_13004 0 0 1 1 580379 580390 mRNA hsa-miR-127-3p BSG miRanda miRanda
1439 chr19 580389 580389 1 + G C rs202113312 580387 + 580367 580407 41 CTGTGGTTGCAGGGTGGACTCCGACGACCAGTGGGGAGAGT CTGTGGTTGCAGGGTGGACTCCCACGACCAGTGGGGAGAGT < 41bp 1 0.194757640469809 1 0.0798741281032562 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580387 chr19:580389 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_13005 0 0 1 1 580379 580390 mRNA hsa-miR-127-3p BSG miRanda miRanda
1440 chr19 580389 580389 1 + G C rs202113312 580394 + 580374 580414 41 TGCAGGGTGGACTCCGACGACCAGTGGGGAGAGTACTCCTG TGCAGGGTGGACTCCCACGACCAGTGGGGAGAGTACTCCTG < 41bp 1 0.426173867692407 1 0.192533791065216 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580394 chr19:580389 nonsynonymous SNV 0.002 0 16 hm5C_associated_SNPs_13006 0 0 1 1 580379 580390 mRNA hsa-miR-127-3p BSG miRanda miRanda
1441 chr19 812209 812209 1 + G A rs14613 812197 + 812177 812217 41 GGCTTGTGACGCGGAGAGAACCGATTAAAACCGTTTGAGAA GGCTTGTGACGCGGAGAGAACCGATTAAAACCATTTGAGAA < 41bp 1 0.439988812359862 1 0.0956390202045441 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTBP1 ENSG00000011304 UTR3 Human protein_coding chr19:812197 chr19:812209 . . 0 33 hm5C_associated_SNPs_13058 0 0 1 1 812197 812216 mRNA hsa-miR-371-5p PTBP1 miRanda miRanda
1442 chr19 2271386 2271386 1 + C T rs28384673 2271393 + 2271373 2271413 41 ATCATCTTCAGTTCCAGGGTCTCCCTCCACTGCTGTAGTAA ATCATCTTCAGTTTCAGGGTCTCCCTCCACTGCTGTAGTAA < 41bp 1 0.234418483098529 1 0.258628219366074 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control OAZ1 ENSG00000104904 CDS Human protein_coding chr19:2271393 chr19:2271386 nonsynonymous SNV 0.597 1 14 hm5C_associated_SNPs_13123 0 0 1 1 2271384 2271394 mRNA hsa-miR-504 OAZ1 miRanda miRanda
1443 chr19 2271937 2271937 1 + G A rs533784107 2271919 + 2271899 2271939 41 GCAGCCTCTACATCGAGATCCCGGGCGGCGCGCTGCCCGAG GCAGCCTCTACATCGAGATCCCGGGCGGCGCGCTGCCCAAG < 41bp 1 0.678680097539645 1 0.861434459686279 experiment 0.642639804920709 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control OAZ1 ENSG00000104904 CDS Human protein_coding chr19:2271919 chr19:2271937 nonsynonymous SNV 0.726 1 39 hm5C_associated_SNPs_13126 0 0 1 2 2271937 2271953 mRNA hsa-miR-320a OAZ1 miRanda miRanda
1444 chr19 2271937 2271937 1 + G A rs533784107 2271919 + 2271899 2271939 41 GCAGCCTCTACATCGAGATCCCGGGCGGCGCGCTGCCCGAG GCAGCCTCTACATCGAGATCCCGGGCGGCGCGCTGCCCAAG < 41bp 1 0.678680097539645 1 0.861434459686279 experiment 0.642639804920709 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control OAZ1 ENSG00000104904 CDS Human protein_coding chr19:2271919 chr19:2271937 nonsynonymous SNV 0.726 1 39 hm5C_associated_SNPs_13126 0 0 1 2 2271937 2271953 mRNA hsa-miR-320b OAZ1 miRanda miRanda
1445 chr19 3578653 3578653 1 + C T rs939209 3578644 + 3578624 3578664 41 CATCCTGCACCTTGGGGGCTCCAGCCCCCCTAAAATTAAAT CATCCTGCACCTTGGGGGCTCCAGCCCCCTTAAAATTAAAT < 41bp 1 0.0784078350575106 1 0.454580247402191 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HMG20B ENSG00000064961 UTR3 Human protein_coding chr19:3578644 chr19:3578653 . . 0 30 hm5C_associated_SNPs_13154 0 0 0 1 3578641 3578661 mRNA hsa-miR-590-3p HMG20B miRanda miRanda
1446 chr19 7626456 7626456 1 + G A rs561526950 7626465 + 7626445 7626485 41 CTGAGGACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCT CTGAGGACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCT < 41bp 1 0.392248991184231 1 0.0699202716350555 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626465 chr19:7626456 . . 0 12 hm5C_associated_SNPs_13228 1 0 0 1 7626449 7626463 mRNA hsa-miR-339-5p PNPLA6 miRanda miRanda
1447 chr19 7626456 7626456 1 + G A rs561526950 7626467 + 7626447 7626487 41 GAGGACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGG GAGGACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGG < 41bp 1 0.278347963693536 1 0.0767365396022797 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626467 chr19:7626456 . . 0 10 hm5C_associated_SNPs_13229 1 0 0 1 7626449 7626463 mRNA hsa-miR-339-5p PNPLA6 miRanda miRanda
1448 chr19 7626456 7626456 1 + G A rs561526950 7626468 + 7626448 7626488 41 AGGACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGA AGGACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGA < 41bp 1 0.180482571140545 1 0.0827329754829407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626468 chr19:7626456 . . 0 9 hm5C_associated_SNPs_13230 1 0 0 1 7626449 7626463 mRNA hsa-miR-339-5p PNPLA6 miRanda miRanda
1449 chr19 7626456 7626456 1 + G A rs561526950 7626469 + 7626449 7626489 41 GGACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGAC GGACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGAC < 41bp 1 0.10705820722741 1 0.234183758497238 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626469 chr19:7626456 . . 0 8 hm5C_associated_SNPs_13231 1 0 0 1 7626449 7626463 mRNA hsa-miR-339-5p PNPLA6 miRanda miRanda
1450 chr19 7626456 7626456 1 + G A rs561526950 7626470 + 7626450 7626490 41 GACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGACT GACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGACT < 41bp 1 0.0696652263829412 1 0.370857298374176 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626470 chr19:7626456 . . 0 7 hm5C_associated_SNPs_13232 1 0 0 1 7626449 7626463 mRNA hsa-miR-339-5p PNPLA6 miRanda miRanda
1451 chr19 7626456 7626456 1 + G A rs561526950 7626471 + 7626451 7626491 41 ACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTG ACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTG < 41bp 1 0.432188403314111 1 0.700345516204834 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626471 chr19:7626456 . . 0 6 hm5C_associated_SNPs_13233 1 0 0 1 7626449 7626463 mRNA hsa-miR-339-5p PNPLA6 miRanda miRanda
1452 chr19 7626456 7626456 1 + G A rs561526950 7626473 + 7626453 7626493 41 CTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTGGG CTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTGGG < 41bp 1 0.1055462861284 1 0.549901723861694 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626473 chr19:7626456 . . 0 4 hm5C_associated_SNPs_13234 1 0 0 1 7626449 7626463 mRNA hsa-miR-339-5p PNPLA6 miRanda miRanda
1453 chr19 7626456 7626456 1 + G A rs561526950 7626474 + 7626454 7626494 41 TCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTGGGC TCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTGGGC < 41bp 1 0.079026846034375 1 0.404252171516418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626474 chr19:7626456 . . 0 3 hm5C_associated_SNPs_13235 1 0 0 1 7626449 7626463 mRNA hsa-miR-339-5p PNPLA6 miRanda miRanda
1454 chr19 7626527 7626527 1 + C A rs144903832 7626507 + 7626487 7626527 41 GACTGGGCTGGGGGTGGCCCCGTGGGGGTAGCTCACTCCCC GACTGGGCTGGGGGTGGCCCCGTGGGGGTAGCTCACTCCCA < 41bp 1 0.789696014941068 1 0.920913219451904 experiment 0.420607970117864 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626507 chr19:7626527 . . 0 41 hm5C_associated_SNPs_13236 0 0 1 6 7626518 7626539 mRNA hsa-miR-15a PNPLA6 miRanda miRanda
1455 chr19 7626527 7626527 1 + C A rs144903832 7626507 + 7626487 7626527 41 GACTGGGCTGGGGGTGGCCCCGTGGGGGTAGCTCACTCCCC GACTGGGCTGGGGGTGGCCCCGTGGGGGTAGCTCACTCCCA < 41bp 1 0.789696014941068 1 0.920913219451904 experiment 0.420607970117864 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626507 chr19:7626527 . . 0 41 hm5C_associated_SNPs_13236 0 0 1 6 7626518 7626539 mRNA hsa-miR-16 PNPLA6 miRanda miRanda
1456 chr19 7626527 7626527 1 + C A rs144903832 7626507 + 7626487 7626527 41 GACTGGGCTGGGGGTGGCCCCGTGGGGGTAGCTCACTCCCC GACTGGGCTGGGGGTGGCCCCGTGGGGGTAGCTCACTCCCA < 41bp 1 0.789696014941068 1 0.920913219451904 experiment 0.420607970117864 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626507 chr19:7626527 . . 0 41 hm5C_associated_SNPs_13236 0 0 1 6 7626518 7626539 mRNA hsa-miR-15b PNPLA6 miRanda miRanda
1457 chr19 7626527 7626527 1 + C A rs144903832 7626507 + 7626487 7626527 41 GACTGGGCTGGGGGTGGCCCCGTGGGGGTAGCTCACTCCCC GACTGGGCTGGGGGTGGCCCCGTGGGGGTAGCTCACTCCCA < 41bp 1 0.789696014941068 1 0.920913219451904 experiment 0.420607970117864 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626507 chr19:7626527 . . 0 41 hm5C_associated_SNPs_13236 0 0 1 6 7626519 7626539 mRNA hsa-miR-195 PNPLA6 miRanda miRanda
1458 chr19 7626527 7626527 1 + C A rs144903832 7626507 + 7626487 7626527 41 GACTGGGCTGGGGGTGGCCCCGTGGGGGTAGCTCACTCCCC GACTGGGCTGGGGGTGGCCCCGTGGGGGTAGCTCACTCCCA < 41bp 1 0.789696014941068 1 0.920913219451904 experiment 0.420607970117864 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626507 chr19:7626527 . . 0 41 hm5C_associated_SNPs_13236 0 0 1 6 7626518 7626539 mRNA hsa-miR-424 PNPLA6 miRanda miRanda
1459 chr19 7626527 7626527 1 + C A rs144903832 7626507 + 7626487 7626527 41 GACTGGGCTGGGGGTGGCCCCGTGGGGGTAGCTCACTCCCC GACTGGGCTGGGGGTGGCCCCGTGGGGGTAGCTCACTCCCA < 41bp 1 0.789696014941068 1 0.920913219451904 experiment 0.420607970117864 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626507 chr19:7626527 . . 0 41 hm5C_associated_SNPs_13236 0 0 1 6 7626519 7626539 mRNA hsa-miR-497 PNPLA6 miRanda miRanda
1460 chr19 9960114 9960114 1 + G A rs138973404 9960128 + 9960108 9960148 41 ACTTCAGCAGGGGTGGGAGGCTCCCAGACCCAGGGCAGTGT ACTTCAACAGGGGTGGGAGGCTCCCAGACCCAGGGCAGTGT < 41bp 1 0.196651056823377 1 0.337972044944763 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIN1 ENSG00000127445 UTR3 Human protein_coding chr19:9960128 chr19:9960114 . . 0 7 hm5C_associated_SNPs_13272 0 0 1 1 9960097 9960119 mRNA hsa-miR-370 PIN1 miRanda miRanda
1461 chr19 13010516 13010516 1 + G A rs113720193 13010519 + 13010499 13010539 41 ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAAGA ATTTCCCTTCTGAAGTCATTCAGATGTGTTCCTTAAAAAGA < 41bp 1 0.470172972424154 1 0.503603160381317 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13010519 chr19:13010516 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_13352 0 0 1 1 13010513 13010533 mRNA hsa-miR-873 GCDH miRanda miRanda
1462 chr19 13010520 13010520 1 + A G rs8012 13010519 + 13010499 13010539 41 ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAAGA ATTTCCCTTCTGAAGTCGTTCGGATGTGTTCCTTAAAAAGA < 41bp 1 0.409785217854589 1 0.405917853116989 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13010519 chr19:13010520 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_13353 2 1 1 1 13010513 13010533 mRNA hsa-miR-873 GCDH miRanda miRanda
1463 chr19 16243761 16243761 1 + G A rs182397992 16243766 + 16243746 16243786 41 GGAAAGAAGCCTGGAGCAGCCTCTCCTGTCCACAGCCAGGG GGAAAGAAGCCTGGAACAGCCTCTCCTGTCCACAGCCAGGG < 41bp 1 0.304341575125579 1 0.0736166834831238 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB8A ENSG00000269243 ncRNA_exonic Human antisense chr19:16243766 chr19:16243761 . . 0 16 hm5C_associated_SNPs_13410 0 0 1 1 16243753 16243777 mRNA hsa-miR-184 RAB8A miRanda miRanda
1464 chr19 16799575 16799575 1 + G A rs188996215 16799556 + 16799536 16799576 41 GCTCATGCCTATAATCCTAGCACTTTGGGAGGCCGAGGCGG GCTCATGCCTATAATCCTAGCACTTTGGGAGGCCGAGGCAG < 41bp 1 0.379888634335637 1 0.0297673642635345 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38A ENSG00000072954 UTR3 Human protein_coding chr19:16799556 chr19:16799575 . . 0 40 hm5C_associated_SNPs_13412 0 0 0 1 16799568 16799589 mRNA hsa-miR-125a-3p TMEM38A miRanda miRanda
1465 chr19 16799575 16799575 1 + G A rs188996215 16799558 + 16799538 16799578 41 TCATGCCTATAATCCTAGCACTTTGGGAGGCCGAGGCGGGC TCATGCCTATAATCCTAGCACTTTGGGAGGCCGAGGCAGGC < 41bp 1 0.237959091262853 1 0.101288676261902 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38A ENSG00000072954 UTR3 Human protein_coding chr19:16799558 chr19:16799575 . . 0 38 hm5C_associated_SNPs_13413 0 0 0 1 16799568 16799589 mRNA hsa-miR-125a-3p TMEM38A miRanda miRanda
1466 chr19 16799575 16799575 1 + G A rs188996215 16799568 + 16799548 16799588 41 AATCCTAGCACTTTGGGAGGCCGAGGCGGGCAGATCACCTG AATCCTAGCACTTTGGGAGGCCGAGGCAGGCAGATCACCTG < 41bp 1 0.748423831679636 1 0.832211494445801 experiment 0.503152336640727 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38A ENSG00000072954 UTR3 Human protein_coding chr19:16799568 chr19:16799575 . . 0 28 hm5C_associated_SNPs_13414 0 0 0 1 16799568 16799589 mRNA hsa-miR-125a-3p TMEM38A miRanda miRanda
1467 chr19 17323366 17323366 1 + C T rs150928154 17323349 + 17323329 17323369 41 ATGGACGCACCTGTGGGGAGCACCACATCTCCACCTGCGGC ATGGACGCACCTGTGGGGAGCACCACATCTCCACCTGTGGC < 41bp 1 0.402709178391969 1 0.457244694232941 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYO9B ENSG00000099331 UTR3 Human protein_coding chr19:17323349 chr19:17323366 . . 0 38 hm5C_associated_SNPs_13420 0 0 1 3 17323359 17323381 mRNA hsa-miR-1 MYO9B miRanda miRanda
1468 chr19 17323366 17323366 1 + C T rs150928154 17323349 + 17323329 17323369 41 ATGGACGCACCTGTGGGGAGCACCACATCTCCACCTGCGGC ATGGACGCACCTGTGGGGAGCACCACATCTCCACCTGTGGC < 41bp 1 0.402709178391969 1 0.457244694232941 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYO9B ENSG00000099331 UTR3 Human protein_coding chr19:17323349 chr19:17323366 . . 0 38 hm5C_associated_SNPs_13420 0 0 1 3 17323359 17323381 mRNA hsa-miR-206 MYO9B miRanda miRanda
1469 chr19 17323366 17323366 1 + C T rs150928154 17323349 + 17323329 17323369 41 ATGGACGCACCTGTGGGGAGCACCACATCTCCACCTGCGGC ATGGACGCACCTGTGGGGAGCACCACATCTCCACCTGTGGC < 41bp 1 0.402709178391969 1 0.457244694232941 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYO9B ENSG00000099331 UTR3 Human protein_coding chr19:17323349 chr19:17323366 . . 0 38 hm5C_associated_SNPs_13420 0 0 1 3 17323364 17323385 mRNA hsa-miR-491-5p MYO9B miRanda miRanda
1470 chr19 17392894 17392894 1 + G A rs8100241 17392879 + 17392859 17392899 41 TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCGCGGAC TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCACGGAC < 41bp 1 0.532148644454254 1 0.240589946508408 experiment 0.935702711091491 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17392879 chr19:17392894 nonsynonymous SNV 0.145 3 36 hm5C_associated_SNPs_13425 0 1 1 6 17392893 17392914 mRNA hsa-miR-29a C19orf62 miRanda miRanda
1471 chr19 17392894 17392894 1 + G A rs8100241 17392879 + 17392859 17392899 41 TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCGCGGAC TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCACGGAC < 41bp 1 0.532148644454254 1 0.240589946508408 experiment 0.935702711091491 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17392879 chr19:17392894 nonsynonymous SNV 0.145 3 36 hm5C_associated_SNPs_13425 0 1 1 6 17392893 17392914 mRNA hsa-miR-29a ANKLE1 miRanda miRanda
1472 chr19 17392894 17392894 1 + G A rs8100241 17392879 + 17392859 17392899 41 TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCGCGGAC TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCACGGAC < 41bp 1 0.532148644454254 1 0.240589946508408 experiment 0.935702711091491 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17392879 chr19:17392894 nonsynonymous SNV 0.145 3 36 hm5C_associated_SNPs_13425 0 1 1 6 17392891 17392914 mRNA hsa-miR-29b C19orf62 miRanda miRanda
1473 chr19 17392894 17392894 1 + G A rs8100241 17392879 + 17392859 17392899 41 TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCGCGGAC TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCACGGAC < 41bp 1 0.532148644454254 1 0.240589946508408 experiment 0.935702711091491 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17392879 chr19:17392894 nonsynonymous SNV 0.145 3 36 hm5C_associated_SNPs_13425 0 1 1 6 17392891 17392914 mRNA hsa-miR-29b ANKLE1 miRanda miRanda
1474 chr19 17392894 17392894 1 + G A rs8100241 17392879 + 17392859 17392899 41 TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCGCGGAC TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCACGGAC < 41bp 1 0.532148644454254 1 0.240589946508408 experiment 0.935702711091491 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17392879 chr19:17392894 nonsynonymous SNV 0.145 3 36 hm5C_associated_SNPs_13425 0 1 1 6 17392892 17392914 mRNA hsa-miR-29c C19orf62 miRanda miRanda
1475 chr19 17392894 17392894 1 + G A rs8100241 17392879 + 17392859 17392899 41 TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCGCGGAC TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCACGGAC < 41bp 1 0.532148644454254 1 0.240589946508408 experiment 0.935702711091491 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17392879 chr19:17392894 nonsynonymous SNV 0.145 3 36 hm5C_associated_SNPs_13425 0 1 1 6 17392892 17392914 mRNA hsa-miR-29c ANKLE1 miRanda miRanda
1476 chr19 17973414 17973414 1 + G A rs151028181 17973409 + 17973389 17973429 41 CCTCCCTGATTGCACCTAAACCCAAGAATCACTGTTTCTTA CCTCCCTGATTGCACCTAAACCCAAAAATCACTGTTTCTTA < 41bp 1 0.513339129524729 1 0.0330275297164917 experiment 0.973321740950541 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA68 ENSG00000207166 ncRNA_exonic Human snoRNA chr19:17973409 chr19:17973414 . . 0 26 hm5C_associated_SNPs_13452 0 0 1 1 17973406 17973427 mRNA hsa-miR-494 SNORA68 miRanda miRanda
1477 chr19 17973414 17973414 1 + G A rs151028181 17973410 + 17973390 17973430 41 CTCCCTGATTGCACCTAAACCCAAGAATCACTGTTTCTTAT CTCCCTGATTGCACCTAAACCCAAAAATCACTGTTTCTTAT < 41bp 1 0.333269976311858 1 0.169404983520508 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA68 ENSG00000207166 ncRNA_exonic Human snoRNA chr19:17973410 chr19:17973414 . . 0 25 hm5C_associated_SNPs_13453 0 0 1 1 17973406 17973427 mRNA hsa-miR-494 SNORA68 miRanda miRanda
1478 chr19 17973414 17973414 1 + G A rs151028181 17973420 + 17973400 17973440 41 GCACCTAAACCCAAGAATCACTGTTTCTTATAGCGGTGGTT GCACCTAAACCCAAAAATCACTGTTTCTTATAGCGGTGGTT < 41bp 1 0.12528884025328 1 0.0349036455154419 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA68 ENSG00000207166 ncRNA_exonic Human snoRNA chr19:17973420 chr19:17973414 . . 0 15 hm5C_associated_SNPs_13454 0 0 1 1 17973406 17973427 mRNA hsa-miR-494 SNORA68 miRanda miRanda
1479 chr19 17973414 17973414 1 + G A rs151028181 17973426 + 17973406 17973446 41 AAACCCAAGAATCACTGTTTCTTATAGCGGTGGTTTAAACA AAACCCAAAAATCACTGTTTCTTATAGCGGTGGTTTAAACA < 41bp 1 0.083807298545029 1 0.0319676697254181 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA68 ENSG00000207166 ncRNA_exonic Human snoRNA chr19:17973426 chr19:17973414 . . 0 9 hm5C_associated_SNPs_13455 0 0 1 1 17973406 17973427 mRNA hsa-miR-494 SNORA68 miRanda miRanda
1480 chr19 18280230 18280230 1 + T A rs57909410 18280214 + 18280194 18280234 41 ATCCAGGGGTCCTCATTTCTCCGGCTCTGGCTCTTGTTTGG ATCCAGGGGTCCTCATTTCTCCGGCTCTGGCTCTTGATTGG < 41bp 1 0.615369008439404 1 0.85872495174408 experiment 0.769261983121192 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control PIK3R2 ENSG00000105647;ENSG00000268173 UTR3 Human other chr19:18280214 chr19:18280230 . . 0 37 hm5C_associated_SNPs_13471 0 0 1 1 18280206 18280230 mRNA hsa-miR-335 PIK3R2 miRanda miRanda
1481 chr19 18280230 18280230 1 + T A rs57909410 18280215 + 18280195 18280235 41 TCCAGGGGTCCTCATTTCTCCGGCTCTGGCTCTTGTTTGGG TCCAGGGGTCCTCATTTCTCCGGCTCTGGCTCTTGATTGGG < 41bp 1 0.338452802420426 1 0.241852313280106 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control PIK3R2 ENSG00000105647;ENSG00000268173 UTR3 Human other chr19:18280215 chr19:18280230 . . 0 36 hm5C_associated_SNPs_13472 0 0 1 1 18280206 18280230 mRNA hsa-miR-335 PIK3R2 miRanda miRanda
1482 chr19 18679655 18679655 1 + C T rs57907504 18679645 + 18679625 18679665 41 TCCTTCCTTCCTCAGAACATCTCTATTCTGCAAGACCCCTC TCCTTCCTTCCTCAGAACATCTCTATTCTGTAAGACCCCTC < 41bp 1 0.620243115189595 1 0.366653203964233 experiment 0.759513769620811 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KXD1 ENSG00000268983 ncRNA_intronic Human antisense chr19:18679645 chr19:18679655 . . 0 31 hm5C_associated_SNPs_13486 0 0 1 1 18679641 18679661 mRNA hsa-miR-431 C19orf50 miRanda miRanda
1483 chr19 36128510 36128510 1 + G A rs115413794 36128495 + 36128475 36128515 41 CGCTCCCACCTGGCCGGGCGCTGGCTCCTCCCTCAGTTCTC CGCTCCCACCTGGCCGGGCGCTGGCTCCTCCCTCAATTCTC < 41bp 1 0.562284912814567 1 0.170330315828323 experiment 0.875430174370867 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM42 ENSG00000126254 UTR3 Human protein_coding chr19:36128495 chr19:36128510 . . 0 36 hm5C_associated_SNPs_13629 0 0 1 2 36128495 36128516 mRNA hsa-miR-146a RBM42 miRanda miRanda
1484 chr19 36128510 36128510 1 + G A rs115413794 36128495 + 36128475 36128515 41 CGCTCCCACCTGGCCGGGCGCTGGCTCCTCCCTCAGTTCTC CGCTCCCACCTGGCCGGGCGCTGGCTCCTCCCTCAATTCTC < 41bp 1 0.562284912814567 1 0.170330315828323 experiment 0.875430174370867 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM42 ENSG00000126254 UTR3 Human protein_coding chr19:36128495 chr19:36128510 . . 0 36 hm5C_associated_SNPs_13629 0 0 1 2 36128495 36128516 mRNA hsa-miR-146b-5p RBM42 miRanda miRanda
1485 chr19 39601170 39601170 1 + G A rs11670186 39601151 + 39601131 39601171 41 CTCCTCTCCTGCCCACCTGGCAAGGGCATCGCCAGGTGGGC CTCCTCTCCTGCCCACCTGGCAAGGGCATCGCCAGGTGGAC < 41bp 1 0.677404656153581 1 0.771821737289429 experiment 0.645190687692837 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACP7 ENSG00000183760 UTR3 Human protein_coding chr19:39601151 chr19:39601170 . . 0 40 hm5C_associated_SNPs_13696 0 0 0 1 39601169 39601191 mRNA hsa-miR-142-3p PAPL miRanda miRanda
1486 chr19 39601170 39601170 1 + G A rs11670186 39601162 + 39601142 39601182 41 CCCACCTGGCAAGGGCATCGCCAGGTGGGCACAACCGTCAT CCCACCTGGCAAGGGCATCGCCAGGTGGACACAACCGTCAT < 41bp 1 0.780144262670362 1 0.787792921066284 experiment 0.439711474659275 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACP7 ENSG00000183760 UTR3 Human protein_coding chr19:39601162 chr19:39601170 . . 0 29 hm5C_associated_SNPs_13697 0 0 0 1 39601169 39601191 mRNA hsa-miR-142-3p PAPL miRanda miRanda
1487 chr19 39889464 39889464 1 + G A rs112063338 39889467 + 39889447 39889487 41 CCATGGTTCCCACATTCGCACTCCATGGCCTCCTGTCCTGG CCATGGTTCCCACATTCACACTCCATGGCCTCCTGTCCTGG < 41bp 1 0.767299484195261 1 0.886330604553223 experiment 0.465401031609479 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED29 ENSG00000063322 UTR3 Human protein_coding chr19:39889467 chr19:39889464 . . 0 18 hm5C_associated_SNPs_13699 0 0 1 2 39889447 39889469 mRNA hsa-miR-130a MED29 miRanda miRanda
1488 chr19 39889464 39889464 1 + G A rs112063338 39889467 + 39889447 39889487 41 CCATGGTTCCCACATTCGCACTCCATGGCCTCCTGTCCTGG CCATGGTTCCCACATTCACACTCCATGGCCTCCTGTCCTGG < 41bp 1 0.767299484195261 1 0.886330604553223 experiment 0.465401031609479 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED29 ENSG00000063322 UTR3 Human protein_coding chr19:39889467 chr19:39889464 . . 0 18 hm5C_associated_SNPs_13699 0 0 1 2 39889447 39889469 mRNA hsa-miR-130b MED29 miRanda miRanda
1489 chr19 39918384 39918384 1 + A G rs180825910 39918393 + 39918373 39918413 41 TCACTGTCCTCATTACATTCCTAATATGCAAGTGAGCATGT TCACTGTCCTCGTTACATTCCTAATATGCAAGTGAGCATGT < 41bp 1 0.125887805693118 1 0.0772877335548401 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHG2 ENSG00000269410 ncRNA_exonic Human other chr19:39918393 chr19:39918384 . . 0 12 hm5C_associated_SNPs_13701 0 0 1 4 39918373 39918394 mRNA hsa-miR-1 PLEKHG2 miRanda miRanda
1490 chr19 39918384 39918384 1 + A G rs180825910 39918393 + 39918373 39918413 41 TCACTGTCCTCATTACATTCCTAATATGCAAGTGAGCATGT TCACTGTCCTCGTTACATTCCTAATATGCAAGTGAGCATGT < 41bp 1 0.125887805693118 1 0.0772877335548401 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHG2 ENSG00000269410 ncRNA_exonic Human other chr19:39918393 chr19:39918384 . . 0 12 hm5C_associated_SNPs_13701 0 0 1 4 39918373 39918394 mRNA hsa-miR-206 PLEKHG2 miRanda miRanda
1491 chr19 39918384 39918384 1 + A G rs180825910 39918393 + 39918373 39918413 41 TCACTGTCCTCATTACATTCCTAATATGCAAGTGAGCATGT TCACTGTCCTCGTTACATTCCTAATATGCAAGTGAGCATGT < 41bp 1 0.125887805693118 1 0.0772877335548401 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHG2 ENSG00000269410 ncRNA_exonic Human other chr19:39918393 chr19:39918384 . . 0 12 hm5C_associated_SNPs_13701 0 0 1 4 39918382 39918403 mRNA hsa-miR-448 PLEKHG2 miRanda miRanda
1492 chr19 39918384 39918384 1 + A G rs180825910 39918393 + 39918373 39918413 41 TCACTGTCCTCATTACATTCCTAATATGCAAGTGAGCATGT TCACTGTCCTCGTTACATTCCTAATATGCAAGTGAGCATGT < 41bp 1 0.125887805693118 1 0.0772877335548401 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHG2 ENSG00000269410 ncRNA_exonic Human other chr19:39918393 chr19:39918384 . . 0 12 hm5C_associated_SNPs_13701 0 0 1 4 39918375 39918394 mRNA hsa-miR-613 PLEKHG2 miRanda miRanda
1493 chr19 42814487 42814487 1 + C T rs201526186 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTGATCAAGTTCCAGAGCA < 41bp 1 0.168435896009252 1 0.105370163917542 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814487 synonymous SNV . 0 33 hm5C_associated_SNPs_13751 0 0 0 4 42814473 42814492 mRNA hsa-miR-378 PRR19 miRanda miRanda
1494 chr19 42814487 42814487 1 + C T rs201526186 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTGATCAAGTTCCAGAGCA < 41bp 1 0.168435896009252 1 0.105370163917542 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814487 synonymous SNV . 0 33 hm5C_associated_SNPs_13751 0 0 0 4 42814473 42814494 mRNA hsa-miR-330-5p PRR19 miRanda miRanda
1495 chr19 42814487 42814487 1 + C T rs201526186 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTGATCAAGTTCCAGAGCA < 41bp 1 0.168435896009252 1 0.105370163917542 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814487 synonymous SNV . 0 33 hm5C_associated_SNPs_13751 0 0 0 4 42814476 42814494 mRNA hsa-miR-326 PRR19 miRanda miRanda
1496 chr19 42814487 42814487 1 + C T rs201526186 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTGATCAAGTTCCAGAGCA < 41bp 1 0.168435896009252 1 0.105370163917542 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814487 synonymous SNV . 0 33 hm5C_associated_SNPs_13751 0 0 0 4 42814472 42814492 mRNA hsa-miR-422a PRR19 miRanda miRanda
1497 chr19 49470060 49470060 1 + T C rs569313546 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCCCCCTCCAGCCAATAGGCAGCTTT < 41bp 1 0.701747629549406 1 0.977875828742981 experiment 0.596504740901189 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470060 . . 0 18 hm5C_associated_SNPs_13859 0 0 1 8 49470059 49470084 mRNA hsa-miR-17 FTL miRanda miRanda
1498 chr19 49470060 49470060 1 + T C rs569313546 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCCCCCTCCAGCCAATAGGCAGCTTT < 41bp 1 0.701747629549406 1 0.977875828742981 experiment 0.596504740901189 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470060 . . 0 18 hm5C_associated_SNPs_13859 0 0 1 8 49470059 49470084 mRNA hsa-miR-20a FTL miRanda miRanda
1499 chr19 49470060 49470060 1 + T C rs569313546 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCCCCCTCCAGCCAATAGGCAGCTTT < 41bp 1 0.701747629549406 1 0.977875828742981 experiment 0.596504740901189 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470060 . . 0 18 hm5C_associated_SNPs_13859 0 0 1 8 49470059 49470084 mRNA hsa-miR-93 FTL miRanda miRanda
1500 chr19 49470060 49470060 1 + T C rs569313546 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCCCCCTCCAGCCAATAGGCAGCTTT < 41bp 1 0.701747629549406 1 0.977875828742981 experiment 0.596504740901189 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470060 . . 0 18 hm5C_associated_SNPs_13859 0 0 1 8 49470059 49470084 mRNA hsa-miR-106a FTL miRanda miRanda
1501 chr19 49470060 49470060 1 + T C rs569313546 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCCCCCTCCAGCCAATAGGCAGCTTT < 41bp 1 0.701747629549406 1 0.977875828742981 experiment 0.596504740901189 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470060 . . 0 18 hm5C_associated_SNPs_13859 0 0 1 8 49470058 49470084 mRNA hsa-miR-320a FTL miRanda miRanda
1502 chr19 49470060 49470060 1 + T C rs569313546 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCCCCCTCCAGCCAATAGGCAGCTTT < 41bp 1 0.701747629549406 1 0.977875828742981 experiment 0.596504740901189 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470060 . . 0 18 hm5C_associated_SNPs_13859 0 0 1 8 49470059 49470084 mRNA hsa-miR-20b FTL miRanda miRanda
1503 chr19 49470060 49470060 1 + T C rs569313546 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCCCCCTCCAGCCAATAGGCAGCTTT < 41bp 1 0.701747629549406 1 0.977875828742981 experiment 0.596504740901189 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470060 . . 0 18 hm5C_associated_SNPs_13859 0 0 1 8 49470058 49470084 mRNA hsa-miR-320b FTL miRanda miRanda
1504 chr19 49470060 49470060 1 + T C rs569313546 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCCCCCTCCAGCCAATAGGCAGCTTT < 41bp 1 0.701747629549406 1 0.977875828742981 experiment 0.596504740901189 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470060 . . 0 18 hm5C_associated_SNPs_13859 0 0 1 8 49470060 49470084 mRNA hsa-miR-320c FTL miRanda miRanda
1505 chr19 49470064 49470064 1 + T C rs536646625 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCTCCCCCCAGCCAATAGGCAGCTTT < 41bp 1 0.572414641133994 1 0.467041343450546 experiment 0.855170717732011 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470064 . . 0 22 hm5C_associated_SNPs_13860 0 0 1 9 49470059 49470084 mRNA hsa-miR-17 FTL miRanda miRanda
1506 chr19 49470064 49470064 1 + T C rs536646625 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCTCCCCCCAGCCAATAGGCAGCTTT < 41bp 1 0.572414641133994 1 0.467041343450546 experiment 0.855170717732011 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470064 . . 0 22 hm5C_associated_SNPs_13860 0 0 1 9 49470059 49470084 mRNA hsa-miR-20a FTL miRanda miRanda
1507 chr19 49470064 49470064 1 + T C rs536646625 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCTCCCCCCAGCCAATAGGCAGCTTT < 41bp 1 0.572414641133994 1 0.467041343450546 experiment 0.855170717732011 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470064 . . 0 22 hm5C_associated_SNPs_13860 0 0 1 9 49470061 49470082 mRNA hsa-miR-22 FTL miRanda miRanda
1508 chr19 49470064 49470064 1 + T C rs536646625 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCTCCCCCCAGCCAATAGGCAGCTTT < 41bp 1 0.572414641133994 1 0.467041343450546 experiment 0.855170717732011 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470064 . . 0 22 hm5C_associated_SNPs_13860 0 0 1 9 49470059 49470084 mRNA hsa-miR-93 FTL miRanda miRanda
1509 chr19 49470064 49470064 1 + T C rs536646625 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCTCCCCCCAGCCAATAGGCAGCTTT < 41bp 1 0.572414641133994 1 0.467041343450546 experiment 0.855170717732011 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470064 . . 0 22 hm5C_associated_SNPs_13860 0 0 1 9 49470059 49470084 mRNA hsa-miR-106a FTL miRanda miRanda
1510 chr19 49470064 49470064 1 + T C rs536646625 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCTCCCCCCAGCCAATAGGCAGCTTT < 41bp 1 0.572414641133994 1 0.467041343450546 experiment 0.855170717732011 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470064 . . 0 22 hm5C_associated_SNPs_13860 0 0 1 9 49470058 49470084 mRNA hsa-miR-320a FTL miRanda miRanda
1511 chr19 49470064 49470064 1 + T C rs536646625 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCTCCCCCCAGCCAATAGGCAGCTTT < 41bp 1 0.572414641133994 1 0.467041343450546 experiment 0.855170717732011 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470064 . . 0 22 hm5C_associated_SNPs_13860 0 0 1 9 49470059 49470084 mRNA hsa-miR-20b FTL miRanda miRanda
1512 chr19 49470064 49470064 1 + T C rs536646625 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCTCCCCCCAGCCAATAGGCAGCTTT < 41bp 1 0.572414641133994 1 0.467041343450546 experiment 0.855170717732011 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470064 . . 0 22 hm5C_associated_SNPs_13860 0 0 1 9 49470058 49470084 mRNA hsa-miR-320b FTL miRanda miRanda
1513 chr19 49470064 49470064 1 + T C rs536646625 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCTCCCCCCAGCCAATAGGCAGCTTT < 41bp 1 0.572414641133994 1 0.467041343450546 experiment 0.855170717732011 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470064 . . 0 22 hm5C_associated_SNPs_13860 0 0 1 9 49470060 49470084 mRNA hsa-miR-320c FTL miRanda miRanda
1514 chr19 49993254 49993254 1 + C G rs141468307 49993237 + 49993217 49993257 41 CGCTGGAGGTCAGTGATGAGCAACATTCACCATCTTTCGTT CGCTGGAGGTCAGTGATGAGCAACATTCACCATCTTTGGTT < 41bp 1 0.738169822454323 1 0.396925956010818 experiment 0.523660355091355 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993237 chr19:49993254 . . 0 38 hm5C_associated_SNPs_13881 0 0 1 1 49993243 49993262 mRNA hsa-miR-371-5p SNORD32A miRanda miRanda
1515 chr19 49993254 49993254 1 + C G rs141468307 49993240 + 49993220 49993260 41 TGGAGGTCAGTGATGAGCAACATTCACCATCTTTCGTTTGA TGGAGGTCAGTGATGAGCAACATTCACCATCTTTGGTTTGA < 41bp 1 0.0230534864380949 1 0.036264181137085 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993240 chr19:49993254 . . 0 35 hm5C_associated_SNPs_13882 0 0 1 1 49993243 49993262 mRNA hsa-miR-371-5p SNORD32A miRanda miRanda
1516 chr19 49993254 49993254 1 + C G rs141468307 49993244 + 49993224 49993264 41 GGTCAGTGATGAGCAACATTCACCATCTTTCGTTTGAGTCT GGTCAGTGATGAGCAACATTCACCATCTTTGGTTTGAGTCT < 41bp 1 0.748242979626246 1 0.789601445198059 experiment 0.503514040747507 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993244 chr19:49993254 . . 0 31 hm5C_associated_SNPs_13883 0 0 1 1 49993243 49993262 mRNA hsa-miR-371-5p SNORD32A miRanda miRanda
1517 chr19 49993254 49993254 1 + C G rs141468307 49993246 + 49993226 49993266 41 TCAGTGATGAGCAACATTCACCATCTTTCGTTTGAGTCTCA TCAGTGATGAGCAACATTCACCATCTTTGGTTTGAGTCTCA < 41bp 1 0.0705397614962717 1 0.278565526008606 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993246 chr19:49993254 . . 0 29 hm5C_associated_SNPs_13884 0 0 1 1 49993243 49993262 mRNA hsa-miR-371-5p SNORD32A miRanda miRanda
1518 chr19 49993254 49993254 1 + C G rs141468307 49993247 + 49993227 49993267 41 CAGTGATGAGCAACATTCACCATCTTTCGTTTGAGTCTCAC CAGTGATGAGCAACATTCACCATCTTTGGTTTGAGTCTCAC < 41bp 1 0.120944631106931 1 0.242182284593582 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993247 chr19:49993254 . . 0 28 hm5C_associated_SNPs_13885 0 0 1 1 49993243 49993262 mRNA hsa-miR-371-5p SNORD32A miRanda miRanda
1519 chr19 49993254 49993254 1 + C G rs141468307 49993250 + 49993230 49993270 41 TGATGAGCAACATTCACCATCTTTCGTTTGAGTCTCACGGC TGATGAGCAACATTCACCATCTTTGGTTTGAGTCTCACGGC < 41bp 1 0.180790513525124 1 0.0742266178131104 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993250 chr19:49993254 . . 0 25 hm5C_associated_SNPs_13886 0 0 1 1 49993243 49993262 mRNA hsa-miR-371-5p SNORD32A miRanda miRanda
1520 chr19 49993254 49993254 1 + C G rs141468307 49993267 + 49993247 49993287 41 CATCTTTCGTTTGAGTCTCACGGCCATGAGATCAACCCCAT CATCTTTGGTTTGAGTCTCACGGCCATGAGATCAACCCCAT < 41bp 1 0.494894891195119 1 0.868574500083923 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993267 chr19:49993254 . . 0 8 hm5C_associated_SNPs_13887 0 0 1 1 49993243 49993262 mRNA hsa-miR-371-5p SNORD32A miRanda miRanda
1521 chr19 49995420 49995420 1 + T C rs537341906 49995427 + 49995407 49995447 41 AATGTGCAAGCACTTGGGGACAGCATGAGCTTGCTGTTGTA AATGTGCAAGCACCTGGGGACAGCATGAGCTTGCTGTTGTA < 41bp 1 0.784694496208891 1 0.426548600196838 experiment 0.430611007582218 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995427 chr19:49995420 . . 0 14 hm5C_associated_SNPs_13902 0 0 1 12 49995400 49995422 mRNA hsa-miR-302a RPL13A miRanda miRanda
1522 chr19 49995420 49995420 1 + T C rs537341906 49995427 + 49995407 49995447 41 AATGTGCAAGCACTTGGGGACAGCATGAGCTTGCTGTTGTA AATGTGCAAGCACCTGGGGACAGCATGAGCTTGCTGTTGTA < 41bp 1 0.784694496208891 1 0.426548600196838 experiment 0.430611007582218 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995427 chr19:49995420 . . 0 14 hm5C_associated_SNPs_13902 0 0 1 12 49995400 49995422 mRNA hsa-miR-302b RPL13A miRanda miRanda
1523 chr19 49995420 49995420 1 + T C rs537341906 49995427 + 49995407 49995447 41 AATGTGCAAGCACTTGGGGACAGCATGAGCTTGCTGTTGTA AATGTGCAAGCACCTGGGGACAGCATGAGCTTGCTGTTGTA < 41bp 1 0.784694496208891 1 0.426548600196838 experiment 0.430611007582218 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995427 chr19:49995420 . . 0 14 hm5C_associated_SNPs_13902 0 0 1 12 49995400 49995422 mRNA hsa-miR-302c RPL13A miRanda miRanda
1524 chr19 49995420 49995420 1 + T C rs537341906 49995427 + 49995407 49995447 41 AATGTGCAAGCACTTGGGGACAGCATGAGCTTGCTGTTGTA AATGTGCAAGCACCTGGGGACAGCATGAGCTTGCTGTTGTA < 41bp 1 0.784694496208891 1 0.426548600196838 experiment 0.430611007582218 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995427 chr19:49995420 . . 0 14 hm5C_associated_SNPs_13902 0 0 1 12 49995400 49995422 mRNA hsa-miR-302d RPL13A miRanda miRanda
1525 chr19 49995420 49995420 1 + T C rs537341906 49995427 + 49995407 49995447 41 AATGTGCAAGCACTTGGGGACAGCATGAGCTTGCTGTTGTA AATGTGCAAGCACCTGGGGACAGCATGAGCTTGCTGTTGTA < 41bp 1 0.784694496208891 1 0.426548600196838 experiment 0.430611007582218 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995427 chr19:49995420 . . 0 14 hm5C_associated_SNPs_13902 0 0 1 12 49995400 49995422 mRNA hsa-miR-372 RPL13A miRanda miRanda
1526 chr19 49995420 49995420 1 + T C rs537341906 49995427 + 49995407 49995447 41 AATGTGCAAGCACTTGGGGACAGCATGAGCTTGCTGTTGTA AATGTGCAAGCACCTGGGGACAGCATGAGCTTGCTGTTGTA < 41bp 1 0.784694496208891 1 0.426548600196838 experiment 0.430611007582218 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995427 chr19:49995420 . . 0 14 hm5C_associated_SNPs_13902 0 0 1 12 49995398 49995422 mRNA hsa-miR-373 RPL13A miRanda miRanda
1527 chr19 49995420 49995420 1 + T C rs537341906 49995427 + 49995407 49995447 41 AATGTGCAAGCACTTGGGGACAGCATGAGCTTGCTGTTGTA AATGTGCAAGCACCTGGGGACAGCATGAGCTTGCTGTTGTA < 41bp 1 0.784694496208891 1 0.426548600196838 experiment 0.430611007582218 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995427 chr19:49995420 . . 0 14 hm5C_associated_SNPs_13902 0 0 1 12 49995400 49995422 mRNA hsa-miR-520e RPL13A miRanda miRanda
1528 chr19 49995420 49995420 1 + T C rs537341906 49995427 + 49995407 49995447 41 AATGTGCAAGCACTTGGGGACAGCATGAGCTTGCTGTTGTA AATGTGCAAGCACCTGGGGACAGCATGAGCTTGCTGTTGTA < 41bp 1 0.784694496208891 1 0.426548600196838 experiment 0.430611007582218 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995427 chr19:49995420 . . 0 14 hm5C_associated_SNPs_13902 0 0 1 12 49995399 49995422 mRNA hsa-miR-520a-3p RPL13A miRanda miRanda
1529 chr19 49995420 49995420 1 + T C rs537341906 49995427 + 49995407 49995447 41 AATGTGCAAGCACTTGGGGACAGCATGAGCTTGCTGTTGTA AATGTGCAAGCACCTGGGGACAGCATGAGCTTGCTGTTGTA < 41bp 1 0.784694496208891 1 0.426548600196838 experiment 0.430611007582218 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995427 chr19:49995420 . . 0 14 hm5C_associated_SNPs_13902 0 0 1 12 49995398 49995422 mRNA hsa-miR-520b RPL13A miRanda miRanda
1530 chr19 49995420 49995420 1 + T C rs537341906 49995427 + 49995407 49995447 41 AATGTGCAAGCACTTGGGGACAGCATGAGCTTGCTGTTGTA AATGTGCAAGCACCTGGGGACAGCATGAGCTTGCTGTTGTA < 41bp 1 0.784694496208891 1 0.426548600196838 experiment 0.430611007582218 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995427 chr19:49995420 . . 0 14 hm5C_associated_SNPs_13902 0 0 1 12 49995398 49995422 mRNA hsa-miR-520c-3p RPL13A miRanda miRanda
1531 chr19 49995420 49995420 1 + T C rs537341906 49995427 + 49995407 49995447 41 AATGTGCAAGCACTTGGGGACAGCATGAGCTTGCTGTTGTA AATGTGCAAGCACCTGGGGACAGCATGAGCTTGCTGTTGTA < 41bp 1 0.784694496208891 1 0.426548600196838 experiment 0.430611007582218 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995427 chr19:49995420 . . 0 14 hm5C_associated_SNPs_13902 0 0 1 12 49995400 49995422 mRNA hsa-miR-520d-3p RPL13A miRanda miRanda
1532 chr19 49995420 49995420 1 + T C rs537341906 49995427 + 49995407 49995447 41 AATGTGCAAGCACTTGGGGACAGCATGAGCTTGCTGTTGTA AATGTGCAAGCACCTGGGGACAGCATGAGCTTGCTGTTGTA < 41bp 1 0.784694496208891 1 0.426548600196838 experiment 0.430611007582218 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995427 chr19:49995420 . . 0 14 hm5C_associated_SNPs_13902 0 0 1 12 49995406 49995422 mRNA hsa-miR-302e RPL13A miRanda miRanda
1533 chr19 49995420 49995420 1 + T C rs537341906 49995436 + 49995416 49995456 41 GCACTTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA GCACCTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA < 41bp 1 0.409493001178776 1 0.147377192974091 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995436 chr19:49995420 . . 0 5 hm5C_associated_SNPs_13903 0 0 1 12 49995400 49995422 mRNA hsa-miR-302a RPL13A miRanda miRanda
1534 chr19 49995420 49995420 1 + T C rs537341906 49995436 + 49995416 49995456 41 GCACTTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA GCACCTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA < 41bp 1 0.409493001178776 1 0.147377192974091 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995436 chr19:49995420 . . 0 5 hm5C_associated_SNPs_13903 0 0 1 12 49995400 49995422 mRNA hsa-miR-302b RPL13A miRanda miRanda
1535 chr19 49995420 49995420 1 + T C rs537341906 49995436 + 49995416 49995456 41 GCACTTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA GCACCTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA < 41bp 1 0.409493001178776 1 0.147377192974091 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995436 chr19:49995420 . . 0 5 hm5C_associated_SNPs_13903 0 0 1 12 49995400 49995422 mRNA hsa-miR-302c RPL13A miRanda miRanda
1536 chr19 49995420 49995420 1 + T C rs537341906 49995436 + 49995416 49995456 41 GCACTTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA GCACCTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA < 41bp 1 0.409493001178776 1 0.147377192974091 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995436 chr19:49995420 . . 0 5 hm5C_associated_SNPs_13903 0 0 1 12 49995400 49995422 mRNA hsa-miR-302d RPL13A miRanda miRanda
1537 chr19 49995420 49995420 1 + T C rs537341906 49995436 + 49995416 49995456 41 GCACTTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA GCACCTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA < 41bp 1 0.409493001178776 1 0.147377192974091 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995436 chr19:49995420 . . 0 5 hm5C_associated_SNPs_13903 0 0 1 12 49995400 49995422 mRNA hsa-miR-372 RPL13A miRanda miRanda
1538 chr19 49995420 49995420 1 + T C rs537341906 49995436 + 49995416 49995456 41 GCACTTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA GCACCTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA < 41bp 1 0.409493001178776 1 0.147377192974091 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995436 chr19:49995420 . . 0 5 hm5C_associated_SNPs_13903 0 0 1 12 49995398 49995422 mRNA hsa-miR-373 RPL13A miRanda miRanda
1539 chr19 49995420 49995420 1 + T C rs537341906 49995436 + 49995416 49995456 41 GCACTTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA GCACCTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA < 41bp 1 0.409493001178776 1 0.147377192974091 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995436 chr19:49995420 . . 0 5 hm5C_associated_SNPs_13903 0 0 1 12 49995400 49995422 mRNA hsa-miR-520e RPL13A miRanda miRanda
1540 chr19 49995420 49995420 1 + T C rs537341906 49995436 + 49995416 49995456 41 GCACTTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA GCACCTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA < 41bp 1 0.409493001178776 1 0.147377192974091 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995436 chr19:49995420 . . 0 5 hm5C_associated_SNPs_13903 0 0 1 12 49995399 49995422 mRNA hsa-miR-520a-3p RPL13A miRanda miRanda
1541 chr19 49995420 49995420 1 + T C rs537341906 49995436 + 49995416 49995456 41 GCACTTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA GCACCTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA < 41bp 1 0.409493001178776 1 0.147377192974091 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995436 chr19:49995420 . . 0 5 hm5C_associated_SNPs_13903 0 0 1 12 49995398 49995422 mRNA hsa-miR-520b RPL13A miRanda miRanda
1542 chr19 49995420 49995420 1 + T C rs537341906 49995436 + 49995416 49995456 41 GCACTTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA GCACCTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA < 41bp 1 0.409493001178776 1 0.147377192974091 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995436 chr19:49995420 . . 0 5 hm5C_associated_SNPs_13903 0 0 1 12 49995398 49995422 mRNA hsa-miR-520c-3p RPL13A miRanda miRanda
1543 chr19 49995420 49995420 1 + T C rs537341906 49995436 + 49995416 49995456 41 GCACTTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA GCACCTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA < 41bp 1 0.409493001178776 1 0.147377192974091 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995436 chr19:49995420 . . 0 5 hm5C_associated_SNPs_13903 0 0 1 12 49995400 49995422 mRNA hsa-miR-520d-3p RPL13A miRanda miRanda
1544 chr19 49995420 49995420 1 + T C rs537341906 49995436 + 49995416 49995456 41 GCACTTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA GCACCTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA < 41bp 1 0.409493001178776 1 0.147377192974091 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995436 chr19:49995420 . . 0 5 hm5C_associated_SNPs_13903 0 0 1 12 49995406 49995422 mRNA hsa-miR-302e RPL13A miRanda miRanda
1545 chr19 49995512 49995512 1 + G A rs11539144 49995511 + 49995491 49995531 41 AACCAAGGGGTTACAGGCATCGCCCATGCTCCTCACCTGTA AACCAAGGGGTTACAGGCATCACCCATGCTCCTCACCTGTA < 41bp 1 0.584904170111133 1 0.151925593614578 experiment 0.830191659777733 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995511 chr19:49995512 . . 0 22 hm5C_associated_SNPs_13907 0 0 1 1 49995509 49995530 mRNA hsa-miR-125a-3p RPL13A miRanda miRanda
1546 chr19 49995522 49995522 1 + C T rs3203517 49995511 + 49995491 49995531 41 AACCAAGGGGTTACAGGCATCGCCCATGCTCCTCACCTGTA AACCAAGGGGTTACAGGCATCGCCCATGCTCTTCACCTGTA < 41bp 1 0.63487233433728 1 0.351213574409485 experiment 0.730255331325439 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995511 chr19:49995522 . . 0 32 hm5C_associated_SNPs_13908 0 0 1 1 49995509 49995530 mRNA hsa-miR-125a-3p RPL13A miRanda miRanda
1547 chr19 54606446 54606446 1 + C G rs138758439 54606432 + 54606412 54606452 41 ACCCCTTCAGGAGTCGGCGCCTTCCTCAAGAATGCCTGGGA ACCCCTTCAGGAGTCGGCGCCTTCCTCAAGAATGGCTGGGA < 41bp 1 0.103061004035169 1 0.0950077176094055 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54606432 chr19:54606446 nonsynonymous SNV 0.751 1 35 hm5C_associated_SNPs_13952 0 0 1 1 54606442 54606464 mRNA hsa-miR-149 NDUFA3 miRanda miRanda
1548 chr19 54972653 54972653 1 + G T rs183600073 54972656 + 54972636 54972676 41 GACTGTGCCCGTCCTCGGCCCCCCACCCTGAAGTGCCAGCA GACTGTGCCCGTCCTCGTCCCCCCACCCTGAAGTGCCAGCA < 41bp 1 0.211815622873631 1 0.341613054275513 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 UTR3 Human protein_coding chr19:54972656 chr19:54972653 . . 0 18 hm5C_associated_SNPs_13967 0 0 1 1 54972652 54972675 mRNA hsa-miR-422a LENG8 miRanda miRanda
1549 chr19 54972653 54972653 1 + G T rs183600073 54972657 + 54972637 54972677 41 ACTGTGCCCGTCCTCGGCCCCCCACCCTGAAGTGCCAGCAC ACTGTGCCCGTCCTCGTCCCCCCACCCTGAAGTGCCAGCAC < 41bp 1 0.0958592016218046 1 0.155399769544601 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 UTR3 Human protein_coding chr19:54972657 chr19:54972653 . . 0 17 hm5C_associated_SNPs_13968 0 0 1 1 54972652 54972675 mRNA hsa-miR-422a LENG8 miRanda miRanda
1550 chr19 54972653 54972653 1 + G T rs183600073 54972658 + 54972638 54972678 41 CTGTGCCCGTCCTCGGCCCCCCACCCTGAAGTGCCAGCACC CTGTGCCCGTCCTCGTCCCCCCACCCTGAAGTGCCAGCACC < 41bp 1 0.0572789887335051 1 0.405533045530319 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 UTR3 Human protein_coding chr19:54972658 chr19:54972653 . . 0 16 hm5C_associated_SNPs_13969 0 0 1 1 54972652 54972675 mRNA hsa-miR-422a LENG8 miRanda miRanda
1551 chr19 54972653 54972653 1 + G T rs183600073 54972659 + 54972639 54972679 41 TGTGCCCGTCCTCGGCCCCCCACCCTGAAGTGCCAGCACCA TGTGCCCGTCCTCGTCCCCCCACCCTGAAGTGCCAGCACCA < 41bp 1 0.163402069525589 1 0.620402336120605 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 UTR3 Human protein_coding chr19:54972659 chr19:54972653 . . 0 15 hm5C_associated_SNPs_13970 0 0 1 1 54972652 54972675 mRNA hsa-miR-422a LENG8 miRanda miRanda
1552 chr19 54972653 54972653 1 + G T rs183600073 54972661 + 54972641 54972681 41 TGCCCGTCCTCGGCCCCCCACCCTGAAGTGCCAGCACCACC TGCCCGTCCTCGTCCCCCCACCCTGAAGTGCCAGCACCACC < 41bp 1 0.0607580629956287 1 0.561926186084747 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 UTR3 Human protein_coding chr19:54972661 chr19:54972653 . . 0 13 hm5C_associated_SNPs_13971 0 0 1 1 54972652 54972675 mRNA hsa-miR-422a LENG8 miRanda miRanda
1553 chr19 54972653 54972653 1 + G T rs183600073 54972662 + 54972642 54972682 41 GCCCGTCCTCGGCCCCCCACCCTGAAGTGCCAGCACCACCA GCCCGTCCTCGTCCCCCCACCCTGAAGTGCCAGCACCACCA < 41bp 1 0.207342801877795 1 0.493400484323502 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 UTR3 Human protein_coding chr19:54972662 chr19:54972653 . . 0 12 hm5C_associated_SNPs_13972 0 0 1 1 54972652 54972675 mRNA hsa-miR-422a LENG8 miRanda miRanda
1554 chr19 59061961 59061961 1 + C T rs201545775 59061965 + 59061945 59061985 41 AGCCTGGCTCTGTTCTCTGTCCTGTCACCCCATCCCCACTC AGCCTGGCTCTGTTCTTTGTCCTGTCACCCCATCCCCACTC < 41bp 1 0.278092793837795 1 0.133128941059113 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 UTR3 Human protein_coding chr19:59061965 chr19:59061961 . . 0 17 hm5C_associated_SNPs_14056 0 0 1 1 59061951 59061973 mRNA hsa-miR-542-3p TRIM28 miRanda miRanda
1555 chr19 59094136 59094136 1 + A G rs8106379 59094134 + 59094114 59094154 41 CAGACGCTTCCATGAACTCTCAAGTGTGACTTATTACAGCC CAGACGCTTCCATGAACTCTCAGGTGTGACTTATTACAGCC < 41bp 1 0.638488316068591 1 0.694903194904327 experiment 0.723023367862817 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CENPBD1P1 ENSG00000213753 ncRNA_exonic Human transcribed_processed_pseudogene chr19:59094134 chr19:59094136 . . 0 23 hm5C_associated_SNPs_14058 0 0 1 1 59094123 59094146 mRNA hsa-miR-224 MGC2752 miRanda miRanda
1556 chr19 59102874 59102874 1 + G A rs201252898 59102868 + 59102848 59102888 41 CAGAGCTTTGTTCTCAGGACCCACCCGAGGATGGGTCACCA CAGAGCTTTGTTCTCAGGACCCACCCAAGGATGGGTCACCA < 41bp 1 0.0250028513668165 1 0.0569269955158234 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPBD1P1;NONE ENSG00000213753 ncRNA_exonic Human transcribed_processed_pseudogene chr19:59102868 chr19:59102874 . . 0 27 hm5C_associated_SNPs_14061 0 0 0 1 59102867 59102891 mRNA hsa-miR-125a-3p MGC2752 miRanda miRanda
1557 chr19 59102878 59102878 1 + A G rs80223678 59102868 + 59102848 59102888 41 CAGAGCTTTGTTCTCAGGACCCACCCGAGGATGGGTCACCA CAGAGCTTTGTTCTCAGGACCCACCCGAGGGTGGGTCACCA < 41bp 1 0.0208827262658672 1 0.0699622929096222 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPBD1P1;NONE ENSG00000213753 ncRNA_exonic Human transcribed_processed_pseudogene chr19:59102868 chr19:59102878 . . 0 31 hm5C_associated_SNPs_14062 0 0 0 1 59102867 59102891 mRNA hsa-miR-125a-3p MGC2752 miRanda miRanda
1558 chr20 2636749 2636749 1 + G A rs140275178 2636757 + 2636737 2636777 41 TTGGGGGATCACGGTGATGGCTGACCAGGGCTCCCTGACCT TTGGGGGATCACAGTGATGGCTGACCAGGGCTCCCTGACCT < 41bp 1 0.474401218742988 1 0.0545556545257568 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD86 ENSG00000212498 ncRNA_exonic Human snoRNA chr20:2636757 chr20:2636749 . . 0 13 hm5C_associated_SNPs_14098 0 0 1 1 2636748 2636770 mRNA hsa-miR-504 SNORD86 miRanda miRanda
1559 chr20 2636749 2636749 1 + G A rs140275178 2636761 + 2636741 2636781 41 GGGATCACGGTGATGGCTGACCAGGGCTCCCTGACCTATAC GGGATCACAGTGATGGCTGACCAGGGCTCCCTGACCTATAC < 41bp 1 0.539664742365829 1 0.502054929733276 experiment 0.920670515268342 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD86 ENSG00000212498 ncRNA_exonic Human snoRNA chr20:2636761 chr20:2636749 . . 0 9 hm5C_associated_SNPs_14099 0 0 1 1 2636748 2636770 mRNA hsa-miR-504 SNORD86 miRanda miRanda
1560 chr20 3893159 3893159 1 + T C rs149583615 3893142 + 3893122 3893162 41 TTTTTGGTCTCTGCTGTCTTCTTACTGGCTGTACCACTTTT TTTTTGGTCTCTGCTGTCTTCTTACTGGCTGTACCACCTTT < 41bp 1 0.139819752604035 1 0.0810133814811707 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PANK2 ENSG00000125779 CDS Human protein_coding chr20:3893142 chr20:3893159 synonymous SNV . 0 38 hm5C_associated_SNPs_14116 0 0 1 1 3893154 3893176 mRNA hsa-miR-335 PANK2 miRanda miRanda
1561 chr20 30157026 30157026 1 + A G rs4607 30157025 + 30157005 30157045 41 GAGAAGAAAGAGAAATGATGCAGCTGGTGCCCGAGCCTCTC GAGAAGAAAGAGAAATGATGCGGCTGGTGCCCGAGCCTCTC < 41bp 1 0.735607015460173 1 0.784740328788757 experiment 0.528785969079655 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HM13-AS1 ENSG00000230613 ncRNA_intronic Human antisense chr20:30157025 chr20:30157026 . . 0 22 hm5C_associated_SNPs_14165 0 0 1 1 30157009 30157031 mRNA hsa-miR-148b HM13 miRanda miRanda
1562 chr20 31025163 31025163 1 + A G rs2295764 31025162 + 31025142 31025182 41 TAAATTATGGCCATGGGAAACATTGTATATTTAGTGTGTGT TAAATTATGGCCATGGGAAACGTTGTATATTTAGTGTGTGT < 41bp 1 0.0547027406921344 1 0.151070445775986 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 UTR3 Human protein_coding chr20:31025162 chr20:31025163 . . 0 22 hm5C_associated_SNPs_14186 1 0 1 3 31025157 31025181 mRNA hsa-miR-362-3p ASXL1 miRanda miRanda
1563 chr20 31025163 31025163 1 + A G rs2295764 31025162 + 31025142 31025182 41 TAAATTATGGCCATGGGAAACATTGTATATTTAGTGTGTGT TAAATTATGGCCATGGGAAACGTTGTATATTTAGTGTGTGT < 41bp 1 0.0547027406921344 1 0.151070445775986 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 UTR3 Human protein_coding chr20:31025162 chr20:31025163 . . 0 22 hm5C_associated_SNPs_14186 1 0 1 3 31025157 31025183 mRNA hsa-miR-377 ASXL1 miRanda miRanda
1564 chr20 31025163 31025163 1 + A G rs2295764 31025162 + 31025142 31025182 41 TAAATTATGGCCATGGGAAACATTGTATATTTAGTGTGTGT TAAATTATGGCCATGGGAAACGTTGTATATTTAGTGTGTGT < 41bp 1 0.0547027406921344 1 0.151070445775986 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 UTR3 Human protein_coding chr20:31025162 chr20:31025163 . . 0 22 hm5C_associated_SNPs_14186 1 0 1 3 31025160 31025181 mRNA hsa-miR-329 ASXL1 miRanda miRanda
1565 chr20 32441602 32441602 1 + T C rs187600351 32441589 + 32441569 32441609 41 GGCGGGGTGGGAAGTGCCTGCTGTTTATAATGTTGAATTTC GGCGGGGTGGGAAGTGCCTGCTGTTTATAATGTCGAATTTC < 41bp 1 0.334616395121613 1 0.283725470304489 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHMP4B ENSG00000101421 UTR3 Human protein_coding chr20:32441589 chr20:32441602 . . 0 34 hm5C_associated_SNPs_14189 0 0 1 6 32441601 32441626 mRNA hsa-miR-145 CHMP4B miRanda miRanda
1566 chr20 32441602 32441602 1 + T C rs187600351 32441589 + 32441569 32441609 41 GGCGGGGTGGGAAGTGCCTGCTGTTTATAATGTTGAATTTC GGCGGGGTGGGAAGTGCCTGCTGTTTATAATGTCGAATTTC < 41bp 1 0.334616395121613 1 0.283725470304489 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHMP4B ENSG00000101421 UTR3 Human protein_coding chr20:32441589 chr20:32441602 . . 0 34 hm5C_associated_SNPs_14189 0 0 1 6 32441585 32441606 mRNA hsa-miR-505 CHMP4B miRanda miRanda
1567 chr20 32441602 32441602 1 + T C rs187600351 32441589 + 32441569 32441609 41 GGCGGGGTGGGAAGTGCCTGCTGTTTATAATGTTGAATTTC GGCGGGGTGGGAAGTGCCTGCTGTTTATAATGTCGAATTTC < 41bp 1 0.334616395121613 1 0.283725470304489 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHMP4B ENSG00000101421 UTR3 Human protein_coding chr20:32441589 chr20:32441602 . . 0 34 hm5C_associated_SNPs_14189 0 0 1 6 32441590 32441612 mRNA hsa-miR-539 CHMP4B miRanda miRanda
1568 chr20 32441602 32441602 1 + T C rs187600351 32441589 + 32441569 32441609 41 GGCGGGGTGGGAAGTGCCTGCTGTTTATAATGTTGAATTTC GGCGGGGTGGGAAGTGCCTGCTGTTTATAATGTCGAATTTC < 41bp 1 0.334616395121613 1 0.283725470304489 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHMP4B ENSG00000101421 UTR3 Human protein_coding chr20:32441589 chr20:32441602 . . 0 34 hm5C_associated_SNPs_14189 0 0 1 6 32441599 32441619 mRNA hsa-miR-590-3p CHMP4B miRanda miRanda
1569 chr20 32441602 32441602 1 + T C rs187600351 32441589 + 32441569 32441609 41 GGCGGGGTGGGAAGTGCCTGCTGTTTATAATGTTGAATTTC GGCGGGGTGGGAAGTGCCTGCTGTTTATAATGTCGAATTTC < 41bp 1 0.334616395121613 1 0.283725470304489 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHMP4B ENSG00000101421 UTR3 Human protein_coding chr20:32441589 chr20:32441602 . . 0 34 hm5C_associated_SNPs_14189 0 0 1 6 32441583 32441605 mRNA hsa-miR-421 CHMP4B miRanda miRanda
1570 chr20 32441602 32441602 1 + T C rs187600351 32441589 + 32441569 32441609 41 GGCGGGGTGGGAAGTGCCTGCTGTTTATAATGTTGAATTTC GGCGGGGTGGGAAGTGCCTGCTGTTTATAATGTCGAATTTC < 41bp 1 0.334616395121613 1 0.283725470304489 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHMP4B ENSG00000101421 UTR3 Human protein_coding chr20:32441589 chr20:32441602 . . 0 34 hm5C_associated_SNPs_14189 0 0 1 6 32441577 32441603 mRNA hsa-miR-543 CHMP4B miRanda miRanda
1571 chr20 35857284 35857284 1 + T C rs73293748 35857281 + 35857261 35857301 41 AATAAGCTTGGGAGGTGAGGCACTGTGTGCAGTCTCCATAA AATAAGCTTGGGAGGTGAGGCACCGTGTGCAGTCTCCATAA < 41bp 1 0.682290931939663 1 0.329100966453552 experiment 0.635418136120674 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPN2 ENSG00000118705 intronic Human protein_coding chr20:35857281 chr20:35857284 . . 0 24 hm5C_associated_SNPs_14204 0 0 1 2 35857269 35857288 mRNA hsa-miR-128 RPN2 miRanda miRanda
1572 chr20 35857284 35857284 1 + T C rs73293748 35857281 + 35857261 35857301 41 AATAAGCTTGGGAGGTGAGGCACTGTGTGCAGTCTCCATAA AATAAGCTTGGGAGGTGAGGCACCGTGTGCAGTCTCCATAA < 41bp 1 0.682290931939663 1 0.329100966453552 experiment 0.635418136120674 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPN2 ENSG00000118705 intronic Human protein_coding chr20:35857281 chr20:35857284 . . 0 24 hm5C_associated_SNPs_14204 0 0 1 2 35857271 35857293 mRNA hsa-miR-342-3p RPN2 miRanda miRanda
1573 chr20 43356156 43356156 1 + C T rs1061098 43356149 + 43356129 43356169 41 GTATGGCAGAGGTGCAAGACCTAGTCCCCTTTCCTCTAACT GTATGGCAGAGGTGCAAGACCTAGTCCTCTTTCCTCTAACT < 41bp 1 0.457067375605486 1 0.0471051931381226 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNK15-AS1 ENSG00000244558 ncRNA_intronic Human antisense chr20:43356149 chr20:43356156 . . 0 28 hm5C_associated_SNPs_14227 0 1 1 2 43356156 43356177 mRNA hsa-miR-34a WISP2 miRanda miRanda
1574 chr20 43356156 43356156 1 + C T rs1061098 43356149 + 43356129 43356169 41 GTATGGCAGAGGTGCAAGACCTAGTCCCCTTTCCTCTAACT GTATGGCAGAGGTGCAAGACCTAGTCCTCTTTCCTCTAACT < 41bp 1 0.457067375605486 1 0.0471051931381226 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNK15-AS1 ENSG00000244558 ncRNA_intronic Human antisense chr20:43356149 chr20:43356156 . . 0 28 hm5C_associated_SNPs_14227 0 1 1 2 43356156 43356177 mRNA hsa-miR-34c-5p WISP2 miRanda miRanda
1575 chr20 43535101 43535101 1 + T C rs6876 43535105 + 43535085 43535125 41 CTCGTGCTTTGTGATCTGTTCAGTGTCACTCTGTACCCTCA CTCGTGCTTTGTGATCCGTTCAGTGTCACTCTGTACCCTCA < 41bp 1 0.493354321020426 1 0.340348154306412 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control YWHAB ENSG00000166913 UTR3 Human protein_coding chr20:43535105 chr20:43535101 . . 0 17 hm5C_associated_SNPs_14229 0 0 1 1 43535084 43535105 mRNA hsa-miR-212 YWHAB miRanda miRanda
1576 chr20 44050050 44050050 1 + C T rs146896700 44050042 + 44050022 44050062 41 GAGGCCCCCCCAGTGCCCTTCCTGCATGCCCAGCGGTACGT GAGGCCCCCCCAGTGCCCTTCCTGCATGTCCAGCGGTACGT < 41bp 1 0.121685914047061 1 0.0529753267765045 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44050042 chr20:44050050 nonsynonymous SNV 0.990 3 29 hm5C_associated_SNPs_14231 0 0 1 1 44050040 44050062 mRNA hsa-miR-126 PIGT miRanda miRanda
1577 chr20 44050061 44050061 1 + G A rs370184382 44050042 + 44050022 44050062 41 GAGGCCCCCCCAGTGCCCTTCCTGCATGCCCAGCGGTACGT GAGGCCCCCCCAGTGCCCTTCCTGCATGCCCAGCGGTACAT < 41bp 1 0.131362828726227 1 0.0526649653911591 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44050042 chr20:44050061 nonsynonymous SNV 0.949 4 40 hm5C_associated_SNPs_14232 0 0 1 1 44050040 44050062 mRNA hsa-miR-126 PIGT miRanda miRanda
1578 chr20 45817263 45817263 1 + A G rs149054416 45817258 + 45817238 45817278 41 TCTAATGTAAGCACTCTATTCTCCAAGTTGTGCTTTGTGGG TCTAATGTAAGCACTCTATTCTCCAGGTTGTGCTTTGTGGG < 41bp 1 0.591149144595233 1 0.920658528804779 experiment 0.817701710809535 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA2 ENSG00000064655 UTR3 Human protein_coding chr20:45817258 chr20:45817263 . . 0 26 hm5C_associated_SNPs_14256 0 0 0 1 45817261 45817286 mRNA hsa-miR-219-5p EYA2 miRanda miRanda
1579 chr20 47895559 47895559 1 + C T rs140365533 47895553 + 47895533 47895573 41 TTATATTTTGCCAGTTAGTTCTGATACATCGGCCTCAAAAG TTATATTTTGCCAGTTAGTTCTGATATATCGGCCTCAAAAG < 41bp 1 0.379180065976571 1 0.0841898322105408 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895553 chr20:47895559 . . 0 27 hm5C_associated_SNPs_14265 0 0 1 2 47895538 47895559 mRNA hsa-miR-361-5p SNORD12C miRanda miRanda
1580 chr20 47895559 47895559 1 + C T rs140365533 47895553 + 47895533 47895573 41 TTATATTTTGCCAGTTAGTTCTGATACATCGGCCTCAAAAG TTATATTTTGCCAGTTAGTTCTGATATATCGGCCTCAAAAG < 41bp 1 0.379180065976571 1 0.0841898322105408 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895553 chr20:47895559 . . 0 27 hm5C_associated_SNPs_14265 0 0 1 2 47895539 47895559 mRNA hsa-miR-383 SNORD12C miRanda miRanda
1581 chr20 47896907 47896907 1 + A C rs116993790 47896887 + 47896867 47896907 41 TGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGA TGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGC < 41bp 1 0.0651505394204513 1 0.0899316370487213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896887 chr20:47896907 . . 0 41 hm5C_associated_SNPs_14266 0 0 1 5 47896905 47896927 mRNA hsa-miR-135a SNORD12B miRanda miRanda
1582 chr20 47896907 47896907 1 + A C rs116993790 47896887 + 47896867 47896907 41 TGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGA TGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGC < 41bp 1 0.0651505394204513 1 0.0899316370487213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896887 chr20:47896907 . . 0 41 hm5C_associated_SNPs_14266 0 0 1 5 47896905 47896927 mRNA hsa-miR-149 SNORD12B miRanda miRanda
1583 chr20 47896907 47896907 1 + A C rs116993790 47896887 + 47896867 47896907 41 TGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGA TGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGC < 41bp 1 0.0651505394204513 1 0.0899316370487213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896887 chr20:47896907 . . 0 41 hm5C_associated_SNPs_14266 0 0 1 5 47896907 47896928 mRNA hsa-miR-193a-3p SNORD12B miRanda miRanda
1584 chr20 47896907 47896907 1 + A C rs116993790 47896887 + 47896867 47896907 41 TGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGA TGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGC < 41bp 1 0.0651505394204513 1 0.0899316370487213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896887 chr20:47896907 . . 0 41 hm5C_associated_SNPs_14266 0 0 1 5 47896905 47896927 mRNA hsa-miR-135b SNORD12B miRanda miRanda
1585 chr20 47896907 47896907 1 + A C rs116993790 47896887 + 47896867 47896907 41 TGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGA TGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGC < 41bp 1 0.0651505394204513 1 0.0899316370487213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896887 chr20:47896907 . . 0 41 hm5C_associated_SNPs_14266 0 0 1 5 47896907 47896928 mRNA hsa-miR-193b SNORD12B miRanda miRanda
1586 chr20 47896907 47896907 1 + A C rs116993790 47896899 + 47896879 47896919 41 TTTTTTCCCCGACAGATCGACTATGTTGATCTAACTTTTCT TTTTTTCCCCGACAGATCGACTATGTTGCTCTAACTTTTCT < 41bp 1 0.124669224516164 1 0.0930370092391968 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896899 chr20:47896907 . . 0 29 hm5C_associated_SNPs_14267 0 0 1 5 47896905 47896927 mRNA hsa-miR-135a SNORD12B miRanda miRanda
1587 chr20 47896907 47896907 1 + A C rs116993790 47896899 + 47896879 47896919 41 TTTTTTCCCCGACAGATCGACTATGTTGATCTAACTTTTCT TTTTTTCCCCGACAGATCGACTATGTTGCTCTAACTTTTCT < 41bp 1 0.124669224516164 1 0.0930370092391968 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896899 chr20:47896907 . . 0 29 hm5C_associated_SNPs_14267 0 0 1 5 47896905 47896927 mRNA hsa-miR-149 SNORD12B miRanda miRanda
1588 chr20 47896907 47896907 1 + A C rs116993790 47896899 + 47896879 47896919 41 TTTTTTCCCCGACAGATCGACTATGTTGATCTAACTTTTCT TTTTTTCCCCGACAGATCGACTATGTTGCTCTAACTTTTCT < 41bp 1 0.124669224516164 1 0.0930370092391968 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896899 chr20:47896907 . . 0 29 hm5C_associated_SNPs_14267 0 0 1 5 47896907 47896928 mRNA hsa-miR-193a-3p SNORD12B miRanda miRanda
1589 chr20 47896907 47896907 1 + A C rs116993790 47896899 + 47896879 47896919 41 TTTTTTCCCCGACAGATCGACTATGTTGATCTAACTTTTCT TTTTTTCCCCGACAGATCGACTATGTTGCTCTAACTTTTCT < 41bp 1 0.124669224516164 1 0.0930370092391968 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896899 chr20:47896907 . . 0 29 hm5C_associated_SNPs_14267 0 0 1 5 47896905 47896927 mRNA hsa-miR-135b SNORD12B miRanda miRanda
1590 chr20 47896907 47896907 1 + A C rs116993790 47896899 + 47896879 47896919 41 TTTTTTCCCCGACAGATCGACTATGTTGATCTAACTTTTCT TTTTTTCCCCGACAGATCGACTATGTTGCTCTAACTTTTCT < 41bp 1 0.124669224516164 1 0.0930370092391968 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896899 chr20:47896907 . . 0 29 hm5C_associated_SNPs_14267 0 0 1 5 47896907 47896928 mRNA hsa-miR-193b SNORD12B miRanda miRanda
1591 chr20 47896907 47896907 1 + A C rs116993790 47896909 + 47896889 47896929 41 GACAGATCGACTATGTTGATCTAACTTTTCTAAGCCAGTTT GACAGATCGACTATGTTGCTCTAACTTTTCTAAGCCAGTTT < 41bp 1 0.0873736562070679 1 0.0832721889019012 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896909 chr20:47896907 . . 0 19 hm5C_associated_SNPs_14268 0 0 1 5 47896905 47896927 mRNA hsa-miR-135a SNORD12B miRanda miRanda
1592 chr20 47896907 47896907 1 + A C rs116993790 47896909 + 47896889 47896929 41 GACAGATCGACTATGTTGATCTAACTTTTCTAAGCCAGTTT GACAGATCGACTATGTTGCTCTAACTTTTCTAAGCCAGTTT < 41bp 1 0.0873736562070679 1 0.0832721889019012 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896909 chr20:47896907 . . 0 19 hm5C_associated_SNPs_14268 0 0 1 5 47896905 47896927 mRNA hsa-miR-149 SNORD12B miRanda miRanda
1593 chr20 47896907 47896907 1 + A C rs116993790 47896909 + 47896889 47896929 41 GACAGATCGACTATGTTGATCTAACTTTTCTAAGCCAGTTT GACAGATCGACTATGTTGCTCTAACTTTTCTAAGCCAGTTT < 41bp 1 0.0873736562070679 1 0.0832721889019012 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896909 chr20:47896907 . . 0 19 hm5C_associated_SNPs_14268 0 0 1 5 47896907 47896928 mRNA hsa-miR-193a-3p SNORD12B miRanda miRanda
1594 chr20 47896907 47896907 1 + A C rs116993790 47896909 + 47896889 47896929 41 GACAGATCGACTATGTTGATCTAACTTTTCTAAGCCAGTTT GACAGATCGACTATGTTGCTCTAACTTTTCTAAGCCAGTTT < 41bp 1 0.0873736562070679 1 0.0832721889019012 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896909 chr20:47896907 . . 0 19 hm5C_associated_SNPs_14268 0 0 1 5 47896905 47896927 mRNA hsa-miR-135b SNORD12B miRanda miRanda
1595 chr20 47896907 47896907 1 + A C rs116993790 47896909 + 47896889 47896929 41 GACAGATCGACTATGTTGATCTAACTTTTCTAAGCCAGTTT GACAGATCGACTATGTTGCTCTAACTTTTCTAAGCCAGTTT < 41bp 1 0.0873736562070679 1 0.0832721889019012 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896909 chr20:47896907 . . 0 19 hm5C_associated_SNPs_14268 0 0 1 5 47896907 47896928 mRNA hsa-miR-193b SNORD12B miRanda miRanda
1596 chr20 49493441 49493441 1 + T C rs2295720 49493438 + 49493418 49493458 41 GACCACAGGGTTTGGAGAAGCAGTTGGAACCCACGTGTGGT GACCACAGGGTTTGGAGAAGCAGCTGGAACCCACGTGTGGT < 41bp 1 0.740490210066946 1 0.605733811855316 experiment 0.519019579866109 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCAS4 ENSG00000124243 UTR3 Human protein_coding chr20:49493438 chr20:49493441 . . 0 24 hm5C_associated_SNPs_14272 0 0 0 1 49493440 49493461 mRNA hsa-miR-197 BCAS4 miRanda miRanda
1597 chr20 57478846 57478846 1 + C G rs11554266 57478840 + 57478820 57478860 41 AACGTGCCTGACTTTGACTTCCCTCCCGTAAGCTACACCCC AACGTGCCTGACTTTGACTTCCCTCCGGTAAGCTACACCCC < 41bp 1 0.0636804459536286 1 0.0748854577541351 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57478840 chr20:57478846 synonymous SNV . 0 27 hm5C_associated_SNPs_14288 0 0 1 2 57478838 57478846 mRNA hsa-miR-376a GNAS miRanda miRanda
1598 chr20 57478846 57478846 1 + C G rs11554266 57478840 + 57478820 57478860 41 AACGTGCCTGACTTTGACTTCCCTCCCGTAAGCTACACCCC AACGTGCCTGACTTTGACTTCCCTCCGGTAAGCTACACCCC < 41bp 1 0.0636804459536286 1 0.0748854577541351 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57478840 chr20:57478846 synonymous SNV . 0 27 hm5C_associated_SNPs_14288 0 0 1 2 57478837 57478846 mRNA hsa-miR-376b GNAS miRanda miRanda
1599 chr20 60963542 60963542 1 + T G rs114402901 60963554 + 60963534 60963574 41 CACAGATGTGGAATATTTGTCATAAATAAATAATGAAAACC CACAGATGGGGAATATTTGTCATAAATAAATAATGAAAACC < 41bp 1 0.519018559962811 1 0.306372821331024 experiment 0.961962880074378 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963554 chr20:60963542 . . 0 9 hm5C_associated_SNPs_14311 0 0 1 2 60963535 60963557 mRNA hsa-miR-425 RPS21 miRanda miRanda
1600 chr20 60963542 60963542 1 + T G rs114402901 60963554 + 60963534 60963574 41 CACAGATGTGGAATATTTGTCATAAATAAATAATGAAAACC CACAGATGGGGAATATTTGTCATAAATAAATAATGAAAACC < 41bp 1 0.519018559962811 1 0.306372821331024 experiment 0.961962880074378 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963554 chr20:60963542 . . 0 9 hm5C_associated_SNPs_14311 0 0 1 2 60963536 60963559 mRNA hsa-miR-758 RPS21 miRanda miRanda
1601 chr21 33887131 33887131 1 + G A rs1129157 33887128 + 33887108 33887148 41 TCTCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCT TCTCTTCCTCCTGCAGCCCACCCAGAGAGAGCTGCCCTGCT < 41bp 1 0.228816135418998 1 0.674376010894775 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887128 chr21:33887131 synonymous SNV . 0 24 hm5C_associated_SNPs_14415 0 0 0 1 33887130 33887150 mRNA hsa-miR-214 C21orf63 miRanda miRanda
1602 chr21 33887131 33887131 1 + G A rs1129157 33887129 + 33887109 33887149 41 CTCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCTG CTCTTCCTCCTGCAGCCCACCCAGAGAGAGCTGCCCTGCTG < 41bp 1 0.677000825694398 1 0.359885841608047 experiment 0.645998348611203 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887129 chr21:33887131 synonymous SNV . 0 23 hm5C_associated_SNPs_14416 0 0 0 1 33887130 33887150 mRNA hsa-miR-214 C21orf63 miRanda miRanda
1603 chr21 33887131 33887131 1 + G A rs1129157 33887130 + 33887110 33887150 41 TCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCTGT TCTTCCTCCTGCAGCCCACCCAGAGAGAGCTGCCCTGCTGT < 41bp 1 0.672151489862324 1 0.825838923454285 experiment 0.655697020275353 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887130 chr21:33887131 synonymous SNV . 0 22 hm5C_associated_SNPs_14417 0 0 0 1 33887130 33887150 mRNA hsa-miR-214 C21orf63 miRanda miRanda
1604 chr21 47983806 47983806 1 + C G rs201790767 47983797 + 47983777 47983817 41 CCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG CCCGGCGTGAAGGTCATCATCGCACACACGGAGACCAAAGG < 41bp 1 0.307406097951424 1 0.224317967891693 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47983797 chr21:47983806 synonymous SNV . 0 30 hm5C_associated_SNPs_14515 0 0 1 1 47983804 47983829 mRNA hsa-miR-150 DIP2A miRanda miRanda
1605 chr22 18209613 18209613 1 + A G rs4488761 18209612 + 18209592 18209632 41 GAGCTTACCTGTGTCACTGTCAGCTAGCCAGAGTTGGCACA GAGCTTACCTGTGTCACTGTCGGCTAGCCAGAGTTGGCACA < 41bp 1 0.708729952018354 1 0.291658043861389 experiment 0.582540095963292 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCL2L13 ENSG00000099968 CDS Human protein_coding chr22:18209612 chr22:18209613 synonymous SNV . 0 22 hm5C_associated_SNPs_14518 0 0 1 1 18209592 18209615 mRNA hsa-miR-139-5p BCL2L13 miRanda miRanda
1606 chr22 18979430 18979430 1 + G A rs534406602 18979435 + 18979415 18979455 41 AGGCCCGTCCTGGTGGAGTTCACCCTGCTGGAGATGGAGAA AGGCCCGTCCTGGTGAAGTTCACCCTGCTGGAGATGGAGAA < 41bp 1 0.241037448111589 1 0.273840039968491 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979435 chr22:18979430 . . 0 16 hm5C_associated_SNPs_14545 0 0 1 1 18979419 18979442 mRNA hsa-miR-125a-3p DGCR5 miRanda miRanda
1607 chr22 20052327 20052327 1 + C T rs544274351 20052334 + 20052314 20052354 41 GCCCTGTGGTTTGCGTGTTACCCATCTGTGTCCCCATGCCC GCCCTGTGGTTTGTGTGTTACCCATCTGTGTCCCCATGCCC < 41bp 1 0.103657858330313 1 0.0290983319282532 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TANGO2 ENSG00000268292 ncRNA_exonic Human antisense chr22:20052334 chr22:20052327 . . 0 14 hm5C_associated_SNPs_14556 0 0 1 1 20052314 20052335 mRNA hsa-miR-194 C22orf25 miRanda miRanda
1608 chr22 21305049 21305049 1 + G A rs57573660 21305056 + 21305036 21305076 41 GTTGGGTTTTTATGATAGTGCAAGGAATGACTCATGCCTCT GTTGGGTTTTTATAATAGTGCAAGGAATGACTCATGCCTCT < 41bp 1 0.681825444379902 1 0.268046230077744 experiment 0.636349111240196 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRKL ENSG00000099942 UTR3 Human protein_coding chr22:21305056 chr22:21305049 . . 0 14 hm5C_associated_SNPs_14560 0 0 1 1 21305047 21305069 mRNA hsa-miR-496 CRKL miRanda miRanda
1609 chr22 22050304 22050304 1 + T A rs190466719 22050296 + 22050276 22050316 41 GTATATGTCTGGTTTTCTTACCCCTACTTCTGTCATCTTCT GTATATGTCTGGTTTTCTTACCCCTACTACTGTCATCTTCT < 41bp 1 0.08351372233864 1 0.181136906147003 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPIL2 ENSG00000100023 UTR3 Human protein_coding chr22:22050296 chr22:22050304 . . 0 29 hm5C_associated_SNPs_14580 0 0 1 2 22050301 22050322 mRNA hsa-miR-125b PPIL2 miRanda miRanda
1610 chr22 22050304 22050304 1 + T A rs190466719 22050296 + 22050276 22050316 41 GTATATGTCTGGTTTTCTTACCCCTACTTCTGTCATCTTCT GTATATGTCTGGTTTTCTTACCCCTACTACTGTCATCTTCT < 41bp 1 0.08351372233864 1 0.181136906147003 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPIL2 ENSG00000100023 UTR3 Human protein_coding chr22:22050296 chr22:22050304 . . 0 29 hm5C_associated_SNPs_14580 0 0 1 2 22050299 22050322 mRNA hsa-miR-125a-5p PPIL2 miRanda miRanda
1611 chr22 29184245 29184245 1 + T C rs568694373 29184234 + 29184214 29184254 41 GCCATTTGATAAACTTCTGCCTTGTAGTCATTGTTTGATGG GCCATTTGATAAACTTCTGCCTTGTAGTCATCGTTTGATGG < 41bp 1 0.170671070498206 1 0.0458030998706818 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC117 ENSG00000159873 UTR3 Human protein_coding chr22:29184234 chr22:29184245 . . 0 32 hm5C_associated_SNPs_14623 0 0 1 2 29184240 29184261 mRNA hsa-miR-133a CCDC117 miRanda miRanda
1612 chr22 29184245 29184245 1 + T C rs568694373 29184234 + 29184214 29184254 41 GCCATTTGATAAACTTCTGCCTTGTAGTCATTGTTTGATGG GCCATTTGATAAACTTCTGCCTTGTAGTCATCGTTTGATGG < 41bp 1 0.170671070498206 1 0.0458030998706818 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC117 ENSG00000159873 UTR3 Human protein_coding chr22:29184234 chr22:29184245 . . 0 32 hm5C_associated_SNPs_14623 0 0 1 2 29184240 29184261 mRNA hsa-miR-133b CCDC117 miRanda miRanda
1613 chr22 36054862 36054862 1 + C G rs143660228 36054872 + 36054852 36054892 41 GCCACCTCTACTGCTGTCATCTCTGGAGTGATGAGCCTCCT GCCACCTCTAGTGCTGTCATCTCTGGAGTGATGAGCCTCCT < 41bp 1 0.523893089044133 1 0.719786763191223 experiment 0.952213821911734 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APOL6 ENSG00000221963 CDS Human protein_coding chr22:36054872 chr22:36054862 nonsynonymous SNV 0.000 0 11 hm5C_associated_SNPs_14651 0 0 0 1 36054854 36054875 mRNA hsa-miR-143 APOL6 miRanda miRanda
1614 chr22 38155661 38155661 1 + C T rs77551684 38155651 + 38155631 38155671 41 CGAGAGTCACTCCCTGAACACAGGGAAATCCTGCCGAGGCC CGAGAGTCACTCCCTGAACACAGGGAAATCTTGCCGAGGCC < 41bp 1 0.434927913408922 1 0.828328609466553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control TRIOBP ENSG00000100106 UTR3 Human protein_coding chr22:38155651 chr22:38155661 . . 0 31 hm5C_associated_SNPs_14680 0 0 0 1 38155642 38155662 mRNA hsa-miR-876-5p TRIOBP miRanda miRanda
1615 chr22 38212762 38212762 1 + A G rs13911 38212763 + 38212743 38212783 41 GAAGAGCCAAGGTCCGCCTACTGCCACAGGGTCAAAGGAGG GAAGAGCCAAGGTCCGCCTGCTGCCACAGGGTCAAAGGAGG < 41bp 1 0.0823442905011286 1 0.113874882459641 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GCAT ENSG00000100116 UTR3 Human protein_coding chr22:38212763 chr22:38212762 . . 0 20 hm5C_associated_SNPs_14684 0 0 0 1 38212754 38212776 mRNA hsa-miR-504 GCAT miRanda miRanda
1616 chr22 38213102 38213102 1 + T C rs2269617 38213096 + 38213076 38213116 41 AATCCCAGCACTTTGGGAGGCCAAGGTAGGCGGATCACCTG AATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACCTG < 41bp 1 0.663266392965598 1 0.750747740268707 experiment 0.673467214068804 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GCAT ENSG00000100116 UTR3 Human protein_coding chr22:38213096 chr22:38213102 . . 0 27 hm5C_associated_SNPs_14686 0 0 0 1 38213096 38213117 mRNA hsa-miR-125a-3p GCAT miRanda miRanda
1617 chr22 41794553 41794553 1 + T A rs373958647 41794536 + 41794516 41794556 41 AAATCATGAATGAGCTGGAACTTTGCAAGAATATTCATATT AAATCATGAATGAGCTGGAACTTTGCAAGAATATTCAAATT < 41bp 1 0.0968920515471573 1 0.130791991949081 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TEF ENSG00000167074 UTR3 Human protein_coding chr22:41794536 chr22:41794553 . . 0 38 hm5C_associated_SNPs_14736 0 0 0 2 41794539 41794560 mRNA hsa-miR-374a TEF miRanda miRanda
1618 chr22 41794553 41794553 1 + T A rs373958647 41794536 + 41794516 41794556 41 AAATCATGAATGAGCTGGAACTTTGCAAGAATATTCATATT AAATCATGAATGAGCTGGAACTTTGCAAGAATATTCAAATT < 41bp 1 0.0968920515471573 1 0.130791991949081 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TEF ENSG00000167074 UTR3 Human protein_coding chr22:41794536 chr22:41794553 . . 0 38 hm5C_associated_SNPs_14736 0 0 0 2 41794534 41794560 mRNA hsa-miR-374b TEF miRanda miRanda
1619 chr22 43011302 43011302 1 + C A rs148484665 43011293 + 43011273 43011313 41 AAAATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAA AAAATAACGATTCGGGGTGACGCCCGAATACTCACTGCTAA < 41bp 1 0.513238093831035 1 0.377944588661194 experiment 0.973523812337929 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011293 chr22:43011302 . . 0 30 hm5C_associated_SNPs_14748 0 0 1 5 43011300 43011319 lncRNA hsa-miR-130a-5p Z93241.1 miRanda starBase2
1620 chr22 43011302 43011302 1 + C A rs148484665 43011293 + 43011273 43011313 41 AAAATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAA AAAATAACGATTCGGGGTGACGCCCGAATACTCACTGCTAA < 41bp 1 0.513238093831035 1 0.377944588661194 experiment 0.973523812337929 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011293 chr22:43011302 . . 0 30 hm5C_associated_SNPs_14748 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23a-3p Z93241.1 miRanda starBase2
1621 chr22 43011302 43011302 1 + C A rs148484665 43011293 + 43011273 43011313 41 AAAATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAA AAAATAACGATTCGGGGTGACGCCCGAATACTCACTGCTAA < 41bp 1 0.513238093831035 1 0.377944588661194 experiment 0.973523812337929 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011293 chr22:43011302 . . 0 30 hm5C_associated_SNPs_14748 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23b-3p Z93241.1 miRanda starBase2
1622 chr22 43011302 43011302 1 + C A rs148484665 43011293 + 43011273 43011313 41 AAAATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAA AAAATAACGATTCGGGGTGACGCCCGAATACTCACTGCTAA < 41bp 1 0.513238093831035 1 0.377944588661194 experiment 0.973523812337929 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011293 chr22:43011302 . . 0 30 hm5C_associated_SNPs_14748 0 0 1 5 43011298 43011319 lncRNA hsa-miR-23c Z93241.1 miRanda starBase2
1623 chr22 43011302 43011302 1 + C A rs148484665 43011293 + 43011273 43011313 41 AAAATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAA AAAATAACGATTCGGGGTGACGCCCGAATACTCACTGCTAA < 41bp 1 0.513238093831035 1 0.377944588661194 experiment 0.973523812337929 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011293 chr22:43011302 . . 0 30 hm5C_associated_SNPs_14748 0 0 1 5 43011293 43011314 lncRNA hsa-miR-374b-3p Z93241.1 miRanda starBase2
1624 chr22 43011302 43011302 1 + C A rs148484665 43011296 + 43011276 43011316 41 ATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAATGT ATAACGATTCGGGGTGACGCCCGAATACTCACTGCTAATGT < 41bp 1 0.561119152985994 1 0.380922317504883 experiment 0.877761694028012 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011296 chr22:43011302 . . 0 27 hm5C_associated_SNPs_14749 0 0 1 5 43011300 43011319 lncRNA hsa-miR-130a-5p Z93241.1 miRanda starBase2
1625 chr22 43011302 43011302 1 + C A rs148484665 43011296 + 43011276 43011316 41 ATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAATGT ATAACGATTCGGGGTGACGCCCGAATACTCACTGCTAATGT < 41bp 1 0.561119152985994 1 0.380922317504883 experiment 0.877761694028012 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011296 chr22:43011302 . . 0 27 hm5C_associated_SNPs_14749 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23a-3p Z93241.1 miRanda starBase2
1626 chr22 43011302 43011302 1 + C A rs148484665 43011296 + 43011276 43011316 41 ATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAATGT ATAACGATTCGGGGTGACGCCCGAATACTCACTGCTAATGT < 41bp 1 0.561119152985994 1 0.380922317504883 experiment 0.877761694028012 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011296 chr22:43011302 . . 0 27 hm5C_associated_SNPs_14749 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23b-3p Z93241.1 miRanda starBase2
1627 chr22 43011302 43011302 1 + C A rs148484665 43011296 + 43011276 43011316 41 ATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAATGT ATAACGATTCGGGGTGACGCCCGAATACTCACTGCTAATGT < 41bp 1 0.561119152985994 1 0.380922317504883 experiment 0.877761694028012 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011296 chr22:43011302 . . 0 27 hm5C_associated_SNPs_14749 0 0 1 5 43011298 43011319 lncRNA hsa-miR-23c Z93241.1 miRanda starBase2
1628 chr22 43011302 43011302 1 + C A rs148484665 43011296 + 43011276 43011316 41 ATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAATGT ATAACGATTCGGGGTGACGCCCGAATACTCACTGCTAATGT < 41bp 1 0.561119152985994 1 0.380922317504883 experiment 0.877761694028012 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011296 chr22:43011302 . . 0 27 hm5C_associated_SNPs_14749 0 0 1 5 43011293 43011314 lncRNA hsa-miR-374b-3p Z93241.1 miRanda starBase2
1629 chr22 43011302 43011302 1 + C A rs148484665 43011305 + 43011285 43011325 41 CGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAAT CGGGGTGACGCCCGAATACTCACTGCTAATGTGAGACGAAT < 41bp 1 0.475200469285442 1 0.125499695539474 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011305 chr22:43011302 . . 0 18 hm5C_associated_SNPs_14750 0 0 1 5 43011300 43011319 lncRNA hsa-miR-130a-5p Z93241.1 miRanda starBase2
1630 chr22 43011302 43011302 1 + C A rs148484665 43011305 + 43011285 43011325 41 CGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAAT CGGGGTGACGCCCGAATACTCACTGCTAATGTGAGACGAAT < 41bp 1 0.475200469285442 1 0.125499695539474 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011305 chr22:43011302 . . 0 18 hm5C_associated_SNPs_14750 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23a-3p Z93241.1 miRanda starBase2
1631 chr22 43011302 43011302 1 + C A rs148484665 43011305 + 43011285 43011325 41 CGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAAT CGGGGTGACGCCCGAATACTCACTGCTAATGTGAGACGAAT < 41bp 1 0.475200469285442 1 0.125499695539474 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011305 chr22:43011302 . . 0 18 hm5C_associated_SNPs_14750 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23b-3p Z93241.1 miRanda starBase2
1632 chr22 43011302 43011302 1 + C A rs148484665 43011305 + 43011285 43011325 41 CGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAAT CGGGGTGACGCCCGAATACTCACTGCTAATGTGAGACGAAT < 41bp 1 0.475200469285442 1 0.125499695539474 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011305 chr22:43011302 . . 0 18 hm5C_associated_SNPs_14750 0 0 1 5 43011298 43011319 lncRNA hsa-miR-23c Z93241.1 miRanda starBase2
1633 chr22 43011302 43011302 1 + C A rs148484665 43011305 + 43011285 43011325 41 CGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAAT CGGGGTGACGCCCGAATACTCACTGCTAATGTGAGACGAAT < 41bp 1 0.475200469285442 1 0.125499695539474 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011305 chr22:43011302 . . 0 18 hm5C_associated_SNPs_14750 0 0 1 5 43011293 43011314 lncRNA hsa-miR-374b-3p Z93241.1 miRanda starBase2
1634 chr22 43011302 43011302 1 + C A rs148484665 43011307 + 43011287 43011327 41 GGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAATTT GGGTGACGCCCGAATACTCACTGCTAATGTGAGACGAATTT < 41bp 1 0.429224271717657 1 0.0933567583560944 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011307 chr22:43011302 . . 0 16 hm5C_associated_SNPs_14751 0 0 1 5 43011300 43011319 lncRNA hsa-miR-130a-5p Z93241.1 miRanda starBase2
1635 chr22 43011302 43011302 1 + C A rs148484665 43011307 + 43011287 43011327 41 GGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAATTT GGGTGACGCCCGAATACTCACTGCTAATGTGAGACGAATTT < 41bp 1 0.429224271717657 1 0.0933567583560944 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011307 chr22:43011302 . . 0 16 hm5C_associated_SNPs_14751 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23a-3p Z93241.1 miRanda starBase2
1636 chr22 43011302 43011302 1 + C A rs148484665 43011307 + 43011287 43011327 41 GGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAATTT GGGTGACGCCCGAATACTCACTGCTAATGTGAGACGAATTT < 41bp 1 0.429224271717657 1 0.0933567583560944 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011307 chr22:43011302 . . 0 16 hm5C_associated_SNPs_14751 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23b-3p Z93241.1 miRanda starBase2
1637 chr22 43011302 43011302 1 + C A rs148484665 43011307 + 43011287 43011327 41 GGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAATTT GGGTGACGCCCGAATACTCACTGCTAATGTGAGACGAATTT < 41bp 1 0.429224271717657 1 0.0933567583560944 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011307 chr22:43011302 . . 0 16 hm5C_associated_SNPs_14751 0 0 1 5 43011298 43011319 lncRNA hsa-miR-23c Z93241.1 miRanda starBase2
1638 chr22 43011302 43011302 1 + C A rs148484665 43011307 + 43011287 43011327 41 GGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAATTT GGGTGACGCCCGAATACTCACTGCTAATGTGAGACGAATTT < 41bp 1 0.429224271717657 1 0.0933567583560944 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011307 chr22:43011302 . . 0 16 hm5C_associated_SNPs_14751 0 0 1 5 43011293 43011314 lncRNA hsa-miR-374b-3p Z93241.1 miRanda starBase2
1639 chr22 43011303 43011303 1 + C G rs549604353 43011293 + 43011273 43011313 41 AAAATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAA AAAATAACGATTCGGGGTGACGCCCGAATCGTCACTGCTAA < 41bp 1 0.510779420065223 1 0.32923036813736 experiment 0.978441159869554 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011293 chr22:43011303 . . 0 31 hm5C_associated_SNPs_14752 0 0 1 5 43011300 43011319 lncRNA hsa-miR-130a-5p Z93241.1 miRanda starBase2
1640 chr22 43011303 43011303 1 + C G rs549604353 43011293 + 43011273 43011313 41 AAAATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAA AAAATAACGATTCGGGGTGACGCCCGAATCGTCACTGCTAA < 41bp 1 0.510779420065223 1 0.32923036813736 experiment 0.978441159869554 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011293 chr22:43011303 . . 0 31 hm5C_associated_SNPs_14752 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23a-3p Z93241.1 miRanda starBase2
1641 chr22 43011303 43011303 1 + C G rs549604353 43011293 + 43011273 43011313 41 AAAATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAA AAAATAACGATTCGGGGTGACGCCCGAATCGTCACTGCTAA < 41bp 1 0.510779420065223 1 0.32923036813736 experiment 0.978441159869554 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011293 chr22:43011303 . . 0 31 hm5C_associated_SNPs_14752 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23b-3p Z93241.1 miRanda starBase2
1642 chr22 43011303 43011303 1 + C G rs549604353 43011293 + 43011273 43011313 41 AAAATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAA AAAATAACGATTCGGGGTGACGCCCGAATCGTCACTGCTAA < 41bp 1 0.510779420065223 1 0.32923036813736 experiment 0.978441159869554 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011293 chr22:43011303 . . 0 31 hm5C_associated_SNPs_14752 0 0 1 5 43011298 43011319 lncRNA hsa-miR-23c Z93241.1 miRanda starBase2
1643 chr22 43011303 43011303 1 + C G rs549604353 43011293 + 43011273 43011313 41 AAAATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAA AAAATAACGATTCGGGGTGACGCCCGAATCGTCACTGCTAA < 41bp 1 0.510779420065223 1 0.32923036813736 experiment 0.978441159869554 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011293 chr22:43011303 . . 0 31 hm5C_associated_SNPs_14752 0 0 1 5 43011293 43011314 lncRNA hsa-miR-374b-3p Z93241.1 miRanda starBase2
1644 chr22 43011303 43011303 1 + C G rs549604353 43011296 + 43011276 43011316 41 ATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAATGT ATAACGATTCGGGGTGACGCCCGAATCGTCACTGCTAATGT < 41bp 1 0.54892764868435 1 0.49511057138443 experiment 0.902144702631299 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011296 chr22:43011303 . . 0 28 hm5C_associated_SNPs_14753 0 0 1 5 43011300 43011319 lncRNA hsa-miR-130a-5p Z93241.1 miRanda starBase2
1645 chr22 43011303 43011303 1 + C G rs549604353 43011296 + 43011276 43011316 41 ATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAATGT ATAACGATTCGGGGTGACGCCCGAATCGTCACTGCTAATGT < 41bp 1 0.54892764868435 1 0.49511057138443 experiment 0.902144702631299 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011296 chr22:43011303 . . 0 28 hm5C_associated_SNPs_14753 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23a-3p Z93241.1 miRanda starBase2
1646 chr22 43011303 43011303 1 + C G rs549604353 43011296 + 43011276 43011316 41 ATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAATGT ATAACGATTCGGGGTGACGCCCGAATCGTCACTGCTAATGT < 41bp 1 0.54892764868435 1 0.49511057138443 experiment 0.902144702631299 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011296 chr22:43011303 . . 0 28 hm5C_associated_SNPs_14753 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23b-3p Z93241.1 miRanda starBase2
1647 chr22 43011303 43011303 1 + C G rs549604353 43011296 + 43011276 43011316 41 ATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAATGT ATAACGATTCGGGGTGACGCCCGAATCGTCACTGCTAATGT < 41bp 1 0.54892764868435 1 0.49511057138443 experiment 0.902144702631299 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011296 chr22:43011303 . . 0 28 hm5C_associated_SNPs_14753 0 0 1 5 43011298 43011319 lncRNA hsa-miR-23c Z93241.1 miRanda starBase2
1648 chr22 43011303 43011303 1 + C G rs549604353 43011296 + 43011276 43011316 41 ATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAATGT ATAACGATTCGGGGTGACGCCCGAATCGTCACTGCTAATGT < 41bp 1 0.54892764868435 1 0.49511057138443 experiment 0.902144702631299 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011296 chr22:43011303 . . 0 28 hm5C_associated_SNPs_14753 0 0 1 5 43011293 43011314 lncRNA hsa-miR-374b-3p Z93241.1 miRanda starBase2
1649 chr22 43011303 43011303 1 + C G rs549604353 43011305 + 43011285 43011325 41 CGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAAT CGGGGTGACGCCCGAATCGTCACTGCTAATGTGAGACGAAT < 41bp 1 0.343741952808188 1 0.209493964910507 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011305 chr22:43011303 . . 0 19 hm5C_associated_SNPs_14754 0 0 1 5 43011300 43011319 lncRNA hsa-miR-130a-5p Z93241.1 miRanda starBase2
1650 chr22 43011303 43011303 1 + C G rs549604353 43011305 + 43011285 43011325 41 CGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAAT CGGGGTGACGCCCGAATCGTCACTGCTAATGTGAGACGAAT < 41bp 1 0.343741952808188 1 0.209493964910507 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011305 chr22:43011303 . . 0 19 hm5C_associated_SNPs_14754 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23a-3p Z93241.1 miRanda starBase2
1651 chr22 43011303 43011303 1 + C G rs549604353 43011305 + 43011285 43011325 41 CGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAAT CGGGGTGACGCCCGAATCGTCACTGCTAATGTGAGACGAAT < 41bp 1 0.343741952808188 1 0.209493964910507 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011305 chr22:43011303 . . 0 19 hm5C_associated_SNPs_14754 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23b-3p Z93241.1 miRanda starBase2
1652 chr22 43011303 43011303 1 + C G rs549604353 43011305 + 43011285 43011325 41 CGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAAT CGGGGTGACGCCCGAATCGTCACTGCTAATGTGAGACGAAT < 41bp 1 0.343741952808188 1 0.209493964910507 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011305 chr22:43011303 . . 0 19 hm5C_associated_SNPs_14754 0 0 1 5 43011298 43011319 lncRNA hsa-miR-23c Z93241.1 miRanda starBase2
1653 chr22 43011303 43011303 1 + C G rs549604353 43011305 + 43011285 43011325 41 CGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAAT CGGGGTGACGCCCGAATCGTCACTGCTAATGTGAGACGAAT < 41bp 1 0.343741952808188 1 0.209493964910507 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011305 chr22:43011303 . . 0 19 hm5C_associated_SNPs_14754 0 0 1 5 43011293 43011314 lncRNA hsa-miR-374b-3p Z93241.1 miRanda starBase2
1654 chr22 43011303 43011303 1 + C G rs549604353 43011307 + 43011287 43011327 41 GGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAATTT GGGTGACGCCCGAATCGTCACTGCTAATGTGAGACGAATTT < 41bp 1 0.379579903049497 1 0.0843262076377869 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011307 chr22:43011303 . . 0 17 hm5C_associated_SNPs_14755 0 0 1 5 43011300 43011319 lncRNA hsa-miR-130a-5p Z93241.1 miRanda starBase2
1655 chr22 43011303 43011303 1 + C G rs549604353 43011307 + 43011287 43011327 41 GGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAATTT GGGTGACGCCCGAATCGTCACTGCTAATGTGAGACGAATTT < 41bp 1 0.379579903049497 1 0.0843262076377869 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011307 chr22:43011303 . . 0 17 hm5C_associated_SNPs_14755 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23a-3p Z93241.1 miRanda starBase2
1656 chr22 43011303 43011303 1 + C G rs549604353 43011307 + 43011287 43011327 41 GGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAATTT GGGTGACGCCCGAATCGTCACTGCTAATGTGAGACGAATTT < 41bp 1 0.379579903049497 1 0.0843262076377869 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011307 chr22:43011303 . . 0 17 hm5C_associated_SNPs_14755 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23b-3p Z93241.1 miRanda starBase2
1657 chr22 43011303 43011303 1 + C G rs549604353 43011307 + 43011287 43011327 41 GGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAATTT GGGTGACGCCCGAATCGTCACTGCTAATGTGAGACGAATTT < 41bp 1 0.379579903049497 1 0.0843262076377869 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011307 chr22:43011303 . . 0 17 hm5C_associated_SNPs_14755 0 0 1 5 43011298 43011319 lncRNA hsa-miR-23c Z93241.1 miRanda starBase2
1658 chr22 43011303 43011303 1 + C G rs549604353 43011307 + 43011287 43011327 41 GGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAATTT GGGTGACGCCCGAATCGTCACTGCTAATGTGAGACGAATTT < 41bp 1 0.379579903049497 1 0.0843262076377869 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011307 chr22:43011303 . . 0 17 hm5C_associated_SNPs_14755 0 0 1 5 43011293 43011314 lncRNA hsa-miR-374b-3p Z93241.1 miRanda starBase2
1659 chr22 44342515 44342515 1 + G A rs554741738 44342508 + 44342488 44342528 41 GGAAATGACACCAGGAAGCCCAGTGCAGAGGGTCCCTTACT GGAAATGACACCAGGAAGCCCAGTGCAAAGGGTCCCTTACT < 41bp 1 0.546288819223293 1 0.858416199684143 experiment 0.907422361553414 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PNPLA3 ENSG00000100344 UTR3 Human protein_coding chr22:44342508 chr22:44342515 . . 0 28 hm5C_associated_SNPs_14770 0 0 1 1 44342515 44342536 mRNA hsa-miR-132 PNPLA3 miRanda miRanda
1660 chr22 50357657 50357657 1 + A G rs150927168 50357675 + 50357655 50357695 41 AAAGTGAGATGTCTGGAGATCATATTTTTTTATACAGGTAT AAGGTGAGATGTCTGGAGATCATATTTTTTTATACAGGTAT < 41bp 1 0.0805314441034175 1 0.289348572492599 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PIM3 ENSG00000198355 UTR3 Human protein_coding chr22:50357675 chr22:50357657 . . 0 3 hm5C_associated_SNPs_14803 0 0 1 2 50357650 50357671 mRNA hsa-miR-338-3p PIM3 miRanda miRanda
1661 chr22 50357657 50357657 1 + A G rs150927168 50357675 + 50357655 50357695 41 AAAGTGAGATGTCTGGAGATCATATTTTTTTATACAGGTAT AAGGTGAGATGTCTGGAGATCATATTTTTTTATACAGGTAT < 41bp 1 0.0805314441034175 1 0.289348572492599 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PIM3 ENSG00000198355 UTR3 Human protein_coding chr22:50357675 chr22:50357657 . . 0 3 hm5C_associated_SNPs_14803 0 0 1 2 50357644 50357667 mRNA hsa-miR-181d PIM3 miRanda miRanda
1662 chr22 50357667 50357667 1 + C G rs189822817 50357675 + 50357655 50357695 41 AAAGTGAGATGTCTGGAGATCATATTTTTTTATACAGGTAT AAAGTGAGATGTGTGGAGATCATATTTTTTTATACAGGTAT < 41bp 1 0.0910829093990562 1 0.269570887088776 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PIM3 ENSG00000198355 UTR3 Human protein_coding chr22:50357675 chr22:50357667 . . 0 13 hm5C_associated_SNPs_14804 0 0 1 2 50357650 50357671 mRNA hsa-miR-338-3p PIM3 miRanda miRanda
1663 chr22 50357667 50357667 1 + C G rs189822817 50357675 + 50357655 50357695 41 AAAGTGAGATGTCTGGAGATCATATTTTTTTATACAGGTAT AAAGTGAGATGTGTGGAGATCATATTTTTTTATACAGGTAT < 41bp 1 0.0910829093990562 1 0.269570887088776 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PIM3 ENSG00000198355 UTR3 Human protein_coding chr22:50357675 chr22:50357667 . . 0 13 hm5C_associated_SNPs_14804 0 0 1 2 50357644 50357667 mRNA hsa-miR-181d PIM3 miRanda miRanda
1664 chrX 1428607 1428607 1 + C T rs28416688 1428605 + 1428585 1428625 41 GCCTGCCCAACATGGTGAAACCCCATCTGGACTAAAAATGC GCCTGCCCAACATGGTGAAACCTCATCTGGACTAAAAATGC < 41bp 1 0.541792285928069 1 0.106238752603531 experiment 0.916415428143862 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF2RA ENSG00000198223 UTR3 Human protein_coding chrX:1428605 chrX:1428607 . . 0 23 hm5C_associated_SNPs_14856 0 0 0 1 1428607 1428629 mRNA hsa-miR-217 CSF2RA miRanda miRanda
1665 chrX 12841166 12841166 1 + T C rs189102420 12841176 + 12841156 12841196 41 TTTGTCATTTTGACTTTTAACAGGTACAGGTGATCTCTTCC TTTGTCATTTCGACTTTTAACAGGTACAGGTGATCTCTTCC < 41bp 1 0.75369564133644 1 0.587566494941711 experiment 0.492608717327119 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPS2 ENSG00000101911 UTR3 Human protein_coding chrX:12841176 chrX:12841166 . . 0 11 hm5C_associated_SNPs_14872 0 0 1 1 12841165 12841186 mRNA hsa-miR-486-5p PRPS2 miRanda miRanda
1666 chrX 47430973 47430973 1 + C T rs755675686 47430992 + 47430972 47431012 41 ACCCTGGGAGATGAGGGGGTCCCCATGTGCTTTTCCAGTTC ATCCTGGGAGATGAGGGGGTCCCCATGTGCTTTTCCAGTTC < 41bp 1 0.739745902756005 1 0.209109991788864 experiment 0.52050819448799 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ARAF ENSG00000078061 UTR3 Human protein_coding chrX:47430992 chrX:47430973 . . 0 2 hm5C_associated_SNPs_14913 0 0 1 1 47430953 47430974 mRNA hsa-miR-491-5p ARAF miRanda miRanda
1667 chrX 47430973 47430973 1 + C T rs755675686 47430993 + 47430973 47431013 41 CCCTGGGAGATGAGGGGGTCCCCATGTGCTTTTCCAGTTCT TCCTGGGAGATGAGGGGGTCCCCATGTGCTTTTCCAGTTCT < 41bp 1 0.347205617007925 1 0.210542142391205 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARAF ENSG00000078061 UTR3 Human protein_coding chrX:47430993 chrX:47430973 . . 0 1 hm5C_associated_SNPs_14914 0 0 1 1 47430953 47430974 mRNA hsa-miR-491-5p ARAF miRanda miRanda
1668 chrX 47431033 47431033 1 + C T rs112568375 47431029 + 47431009 47431049 41 GTTCTTCTGGAATTGGGGGACCCCCGCCAAAGACTGAGCCC GTTCTTCTGGAATTGGGGGACCCCTGCCAAAGACTGAGCCC < 41bp 1 0.394117300120074 1 0.163039326667786 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARAF ENSG00000078061 UTR3 Human protein_coding chrX:47431029 chrX:47431033 . . 0 25 hm5C_associated_SNPs_14915 0 0 1 1 47431026 47431049 mRNA hsa-miR-24 ARAF miRanda miRanda
1669 chrX 47431033 47431033 1 + C T rs112568375 47431030 + 47431010 47431050 41 TTCTTCTGGAATTGGGGGACCCCCGCCAAAGACTGAGCCCC TTCTTCTGGAATTGGGGGACCCCTGCCAAAGACTGAGCCCC < 41bp 1 0.223615768929365 1 0.0710371732711792 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARAF ENSG00000078061 UTR3 Human protein_coding chrX:47431030 chrX:47431033 . . 0 24 hm5C_associated_SNPs_14916 0 0 1 1 47431026 47431049 mRNA hsa-miR-24 ARAF miRanda miRanda
1670 chrX 47431033 47431033 1 + C T rs112568375 47431031 + 47431011 47431051 41 TCTTCTGGAATTGGGGGACCCCCGCCAAAGACTGAGCCCCC TCTTCTGGAATTGGGGGACCCCTGCCAAAGACTGAGCCCCC < 41bp 1 0.316922920057762 1 0.308443605899811 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARAF ENSG00000078061 UTR3 Human protein_coding chrX:47431031 chrX:47431033 . . 0 23 hm5C_associated_SNPs_14917 0 0 1 1 47431026 47431049 mRNA hsa-miR-24 ARAF miRanda miRanda
1671 chrX 47431033 47431033 1 + C T rs112568375 47431032 + 47431012 47431052 41 CTTCTGGAATTGGGGGACCCCCGCCAAAGACTGAGCCCCCT CTTCTGGAATTGGGGGACCCCTGCCAAAGACTGAGCCCCCT < 41bp 1 0.720586212563823 1 0.465850263834 experiment 0.558827574872354 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARAF ENSG00000078061 UTR3 Human protein_coding chrX:47431032 chrX:47431033 . . 0 22 hm5C_associated_SNPs_14918 0 0 1 1 47431026 47431049 mRNA hsa-miR-24 ARAF miRanda miRanda
1672 chrX 48344344 48344344 1 + C T rs149911384 48344342 + 48344322 48344362 41 GTCTTACCTCTTCTTTAAACCTCTTCAGGAGTGTCCTGATT GTCTTACCTCTTCTTTAAACCTTTTCAGGAGTGTCCTGATT < 41bp 1 0.0786228939883657 1 0.0439575910568237 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FTSJ1 ENSG00000068438 UTR3 Human protein_coding chrX:48344342 chrX:48344344 . . 0 23 hm5C_associated_SNPs_14919 0 0 1 1 48344339 48344360 mRNA hsa-miR-873 FTSJ1 miRanda miRanda
1673 chrX 48435928 48435928 1 + C G rs235829 48435925 + 48435905 48435945 41 TATAAAGGTTTTTGGAGCTGCACCGAAGCATCTTATTTTAT TATAAAGGTTTTTGGAGCTGCACGGAAGCATCTTATTTTAT < 41bp 1 0.398089227025841 1 0.0809211134910583 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM3 ENSG00000102317 CDS Human protein_coding chrX:48435925 chrX:48435928 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_14920 0 0 1 7 48435918 48435939 mRNA hsa-miR-18a RBM3 miRanda miRanda
1674 chrX 48435928 48435928 1 + C G rs235829 48435925 + 48435905 48435945 41 TATAAAGGTTTTTGGAGCTGCACCGAAGCATCTTATTTTAT TATAAAGGTTTTTGGAGCTGCACGGAAGCATCTTATTTTAT < 41bp 1 0.398089227025841 1 0.0809211134910583 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM3 ENSG00000102317 CDS Human protein_coding chrX:48435925 chrX:48435928 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_14920 0 0 1 7 48435916 48435939 mRNA hsa-miR-373 RBM3 miRanda miRanda
1675 chrX 48435928 48435928 1 + C G rs235829 48435925 + 48435905 48435945 41 TATAAAGGTTTTTGGAGCTGCACCGAAGCATCTTATTTTAT TATAAAGGTTTTTGGAGCTGCACGGAAGCATCTTATTTTAT < 41bp 1 0.398089227025841 1 0.0809211134910583 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM3 ENSG00000102317 CDS Human protein_coding chrX:48435925 chrX:48435928 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_14920 0 0 1 7 48435927 48435947 mRNA hsa-miR-340 RBM3 miRanda miRanda
1676 chrX 48435928 48435928 1 + C G rs235829 48435925 + 48435905 48435945 41 TATAAAGGTTTTTGGAGCTGCACCGAAGCATCTTATTTTAT TATAAAGGTTTTTGGAGCTGCACGGAAGCATCTTATTTTAT < 41bp 1 0.398089227025841 1 0.0809211134910583 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM3 ENSG00000102317 CDS Human protein_coding chrX:48435925 chrX:48435928 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_14920 0 0 1 7 48435918 48435939 mRNA hsa-miR-18b RBM3 miRanda miRanda
1677 chrX 48435928 48435928 1 + C G rs235829 48435925 + 48435905 48435945 41 TATAAAGGTTTTTGGAGCTGCACCGAAGCATCTTATTTTAT TATAAAGGTTTTTGGAGCTGCACGGAAGCATCTTATTTTAT < 41bp 1 0.398089227025841 1 0.0809211134910583 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM3 ENSG00000102317 CDS Human protein_coding chrX:48435925 chrX:48435928 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_14920 0 0 1 7 48435918 48435939 mRNA hsa-miR-520b RBM3 miRanda miRanda
1678 chrX 48435928 48435928 1 + C G rs235829 48435925 + 48435905 48435945 41 TATAAAGGTTTTTGGAGCTGCACCGAAGCATCTTATTTTAT TATAAAGGTTTTTGGAGCTGCACGGAAGCATCTTATTTTAT < 41bp 1 0.398089227025841 1 0.0809211134910583 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM3 ENSG00000102317 CDS Human protein_coding chrX:48435925 chrX:48435928 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_14920 0 0 1 7 48435917 48435939 mRNA hsa-miR-520c-3p RBM3 miRanda miRanda
1679 chrX 48435928 48435928 1 + C G rs235829 48435925 + 48435905 48435945 41 TATAAAGGTTTTTGGAGCTGCACCGAAGCATCTTATTTTAT TATAAAGGTTTTTGGAGCTGCACGGAAGCATCTTATTTTAT < 41bp 1 0.398089227025841 1 0.0809211134910583 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM3 ENSG00000102317 CDS Human protein_coding chrX:48435925 chrX:48435928 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_14920 0 0 1 7 48435922 48435939 mRNA hsa-miR-302e RBM3 miRanda miRanda
1680 chrX 48927299 48927299 1 + G A rs184704717 48927283 + 48927263 48927303 41 CGCCTTGGCCTCCCAAAGTGCTGGGATTACAGCCGTGAGCC CGCCTTGGCCTCCCAAAGTGCTGGGATTACAGCCGTAAGCC < 41bp 1 0.765023876145708 1 0.707510650157928 experiment 0.469952247708585 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC120 ENSG00000147144 UTR3 Human protein_coding chrX:48927283 chrX:48927299 . . 0 37 hm5C_associated_SNPs_14926 0 0 0 1 48927292 48927316 mRNA hsa-miR-138 CCDC120 miRanda miRanda
1681 chrX 49368288 49368288 1 + G C rs1967646 49368274 + 49368254 49368294 41 TATTTTTTATTTTTAAGGGCCGAAGCCTGAAGCTGATAGCC TATTTTTTATTTTTAAGGGCCGAAGCCTGAAGCTCATAGCC < 41bp 1 0.18062103035614 1 0.421843379735947 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GAGE1 ENSG00000205777 CDS Human protein_coding chrX:49368274 chrX:49368288 nonsynonymous SNV 0.008 2 35 hm5C_associated_SNPs_14932 0 0 0 4 49368284 49368306 mRNA hsa-miR-10a GAGE1 miRanda miRanda
1682 chrX 49368288 49368288 1 + G C rs1967646 49368274 + 49368254 49368294 41 TATTTTTTATTTTTAAGGGCCGAAGCCTGAAGCTGATAGCC TATTTTTTATTTTTAAGGGCCGAAGCCTGAAGCTCATAGCC < 41bp 1 0.18062103035614 1 0.421843379735947 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GAGE1 ENSG00000205777 CDS Human protein_coding chrX:49368274 chrX:49368288 nonsynonymous SNV 0.008 2 35 hm5C_associated_SNPs_14932 0 0 0 4 49368284 49368306 mRNA hsa-miR-10b GAGE1 miRanda miRanda
1683 chrX 49368288 49368288 1 + G C rs1967646 49368274 + 49368254 49368294 41 TATTTTTTATTTTTAAGGGCCGAAGCCTGAAGCTGATAGCC TATTTTTTATTTTTAAGGGCCGAAGCCTGAAGCTCATAGCC < 41bp 1 0.18062103035614 1 0.421843379735947 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GAGE1 ENSG00000205777 CDS Human protein_coding chrX:49368274 chrX:49368288 nonsynonymous SNV 0.008 2 35 hm5C_associated_SNPs_14932 0 0 0 4 49368279 49368305 mRNA hsa-miR-339-5p GAGE1 miRanda miRanda
1684 chrX 49368288 49368288 1 + G C rs1967646 49368274 + 49368254 49368294 41 TATTTTTTATTTTTAAGGGCCGAAGCCTGAAGCTGATAGCC TATTTTTTATTTTTAAGGGCCGAAGCCTGAAGCTCATAGCC < 41bp 1 0.18062103035614 1 0.421843379735947 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GAGE1 ENSG00000205777 CDS Human protein_coding chrX:49368274 chrX:49368288 nonsynonymous SNV 0.008 2 35 hm5C_associated_SNPs_14932 0 0 0 4 49368286 49368307 mRNA hsa-miR-504 GAGE1 miRanda miRanda
1685 chrX 64960287 64960287 1 + T C rs192766716 64960284 + 64960264 64960304 41 GAGTTATTTAGGCTTTGTAACGATTGGGGGATAAAAAGATG GAGTTATTTAGGCTTTGTAACGACTGGGGGATAAAAAGATG < 41bp 1 0.364281179180483 1 0.737002015113831 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MSN ENSG00000147065 UTR3 Human protein_coding chrX:64960284 chrX:64960287 . . 0 24 hm5C_associated_SNPs_14944 0 0 1 1 64960266 64960288 mRNA hsa-miR-487b MSN miRanda miRanda
1686 chrX 70794241 70794241 1 + A G rs183943406 70794243 + 70794223 70794263 41 GACCTAATATTTGGAGCTATCAGTGCTTTGTTGATTTAGAT GACCTAATATTTGGAGCTGTCAGTGCTTTGTTGATTTAGAT < 41bp 1 0.362474377173518 1 0.769671022891998 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCYRN1 ENSG00000147162 UTR3 Human protein_coding chrX:70794243 chrX:70794241 . . 0 19 hm5C_associated_SNPs_14962 0 0 1 1 70794233 70794255 mRNA hsa-miR-495 OGT miRanda miRanda
1687 chrX 73040640 73040640 1 - G C rs369296409 73040659 - 73040639 73040679 41 AAGACTCTTGAACTTGTGAACTGATGTGAAATGCAGAATCT AAGACTCTTGAACTTGTGAACTGATGTGAAATGCAGAATGT < 41bp 1 0.153114316388676 1 0.134533315896988 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040659 chrX:73040640 . . 0 40 hm5C_associated_SNPs_14964 0 0 1 2 73040621 73040642 lncRNA hsa-miR-545-3p XIST miRanda starBase2
1688 chrX 73040640 73040640 1 - G C rs369296409 73040659 - 73040639 73040679 41 AAGACTCTTGAACTTGTGAACTGATGTGAAATGCAGAATCT AAGACTCTTGAACTTGTGAACTGATGTGAAATGCAGAATGT < 41bp 1 0.153114316388676 1 0.134533315896988 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040659 chrX:73040640 . . 0 40 hm5C_associated_SNPs_14964 0 0 1 2 73040629 73040649 lncRNA hsa-miR-888-5p XIST miRanda starBase2
1689 chrX 73042022 73042022 1 - A C rs780532376 73042026 - 73042006 73042046 41 CCCTCATGAAAAATGACTGACCACTGCTGGGCAGCAGGAGG CCCTCATGAAAAATGACTGACCACGGCTGGGCAGCAGGAGG < 41bp 1 0.116464365682529 1 0.158545911312103 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042026 chrX:73042022 . . 0 25 hm5C_associated_SNPs_14966 0 0 1 2 73042008 73042029 lncRNA hsa-miR-370-3p XIST miRanda starBase2
1690 chrX 73042022 73042022 1 - A C rs780532376 73042026 - 73042006 73042046 41 CCCTCATGAAAAATGACTGACCACTGCTGGGCAGCAGGAGG CCCTCATGAAAAATGACTGACCACGGCTGGGCAGCAGGAGG < 41bp 1 0.116464365682529 1 0.158545911312103 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042026 chrX:73042022 . . 0 25 hm5C_associated_SNPs_14966 0 0 1 2 73042008 73042029 lncRNA hsa-miR-6893-3p XIST miRanda starBase2
1691 chrX 73042916 73042916 1 - T C rs5982487 73042925 - 73042905 73042945 41 GTATTTGCTCATTGGTCTGGCTTAGAGACAGGAAGACATAT GTATTTGCTCATTGGTCTGGCTTAGAGACGGGAAGACATAT < 41bp 1 0.0534747736036175 1 0.0647725760936737 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042925 chrX:73042916 . . 0 30 hm5C_associated_SNPs_14967 0 0 1 1 73042896 73042918 lncRNA hsa-miR-137 XIST miRanda starBase2
1692 chrX 73042916 73042916 1 - T C rs5982487 73042929 - 73042909 73042949 41 AAAGGTATTTGCTCATTGGTCTGGCTTAGAGACAGGAAGAC AAAGGTATTTGCTCATTGGTCTGGCTTAGAGACGGGAAGAC < 41bp 1 0.196617765038959 1 0.298234760761261 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042929 chrX:73042916 . . 0 34 hm5C_associated_SNPs_14968 0 0 1 1 73042896 73042918 lncRNA hsa-miR-137 XIST miRanda starBase2
1693 chrX 73043734 73043734 1 - G T rs144341862 73043732 - 73043712 73043752 41 GGGGCTCGGAACTACATGCCCTAGGATATAAAAATGATGTT GGGGCTCGGAACTACATGACCTAGGATATAAAAATGATGTT < 41bp 1 0.359590025680592 1 0.468106210231781 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043732 chrX:73043734 . . 0 19 hm5C_associated_SNPs_14971 0 0 1 1 73043730 73043750 lncRNA hsa-miR-4761-3p XIST miRanda starBase2
1694 chrX 73043734 73043734 1 - G T rs144341862 73043738 - 73043718 73043758 41 TTCTGTGGGGCTCGGAACTACATGCCCTAGGATATAAAAAT TTCTGTGGGGCTCGGAACTACATGACCTAGGATATAAAAAT < 41bp 1 0.217445037533946 1 0.179369360208511 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043738 chrX:73043734 . . 0 25 hm5C_associated_SNPs_14972 0 0 1 1 73043730 73043750 lncRNA hsa-miR-4761-3p XIST miRanda starBase2
1695 chrX 73043734 73043734 1 - G T rs144341862 73043746 - 73043726 73043766 41 TGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGGAT TGATTACTTTCTGTGGGGCTCGGAACTACATGACCTAGGAT < 41bp 1 0.28072896372957 1 0.768303096294403 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043746 chrX:73043734 . . 0 33 hm5C_associated_SNPs_14973 0 0 1 1 73043730 73043750 lncRNA hsa-miR-4761-3p XIST miRanda starBase2
1696 chrX 73043734 73043734 1 - G T rs144341862 73043748 - 73043728 73043768 41 GGTGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGG GGTGATTACTTTCTGTGGGGCTCGGAACTACATGACCTAGG < 41bp 1 0.241036621025157 1 0.280334413051605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043748 chrX:73043734 . . 0 35 hm5C_associated_SNPs_14974 0 0 1 1 73043730 73043750 lncRNA hsa-miR-4761-3p XIST miRanda starBase2
1697 chrX 73045232 73045232 1 - C G rs41305401 73045215 - 73045195 73045235 41 TGTGATAAGCGTTGTGGATACAAAGAAAGGAGCAAGCATAA TGTCATAAGCGTTGTGGATACAAAGAAAGGAGCAAGCATAA < 41bp 1 0.332413124742665 1 0.443327456712723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045215 chrX:73045232 . . 0 4 hm5C_associated_SNPs_14977 0 0 1 2 73045230 73045253 lncRNA hsa-miR-27a-3p XIST miRanda starBase2
1698 chrX 73045232 73045232 1 - C G rs41305401 73045215 - 73045195 73045235 41 TGTGATAAGCGTTGTGGATACAAAGAAAGGAGCAAGCATAA TGTCATAAGCGTTGTGGATACAAAGAAAGGAGCAAGCATAA < 41bp 1 0.332413124742665 1 0.443327456712723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045215 chrX:73045232 . . 0 4 hm5C_associated_SNPs_14977 0 0 1 2 73045230 73045253 lncRNA hsa-miR-27b-3p XIST miRanda starBase2
1699 chrX 73045740 73045740 1 - A C rs1794213 73045745 - 73045725 73045765 41 GAGAACCTGGGACTGTTGAGCATGTTTAATACTTTCCTTGA GAGAACCTGGGACTGTTGAGCATGTGTAATACTTTCCTTGA < 41bp 1 0.172592278600284 1 0.80276894569397 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045745 chrX:73045740 . . 0 26 hm5C_associated_SNPs_14978 0 0 1 1 73045724 73045748 lncRNA hsa-miR-561-5p XIST miRanda starBase2
1700 chrX 73045740 73045740 1 - A C rs1794213 73045753 - 73045733 73045773 41 AAAGATGAGAGAACCTGGGACTGTTGAGCATGTTTAATACT AAAGATGAGAGAACCTGGGACTGTTGAGCATGTGTAATACT < 41bp 1 0.0410911400807021 1 0.0655647814273834 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045753 chrX:73045740 . . 0 34 hm5C_associated_SNPs_14979 0 0 1 1 73045724 73045748 lncRNA hsa-miR-561-5p XIST miRanda starBase2
1701 chrX 73045740 73045740 1 - A C rs1794213 73045760 - 73045740 73045780 41 TAGGCTTAAAGATGAGAGAACCTGGGACTGTTGAGCATGTT TAGGCTTAAAGATGAGAGAACCTGGGACTGTTGAGCATGTG < 41bp 1 0.0611199041548954 1 0.164002746343613 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045760 chrX:73045740 . . 0 41 hm5C_associated_SNPs_14980 0 0 1 1 73045724 73045748 lncRNA hsa-miR-561-5p XIST miRanda starBase2
1702 chrX 73045745 73045745 1 - G A rs41303699 73045753 - 73045733 73045773 41 AAAGATGAGAGAACCTGGGACTGTTGAGCATGTTTAATACT AAAGATGAGAGAACCTGGGACTGTTGAGTATGTTTAATACT < 41bp 1 0.0411102432271814 1 0.0990611910820007 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045753 chrX:73045745 . . 0 29 hm5C_associated_SNPs_14981 0 0 1 1 73045724 73045748 lncRNA hsa-miR-561-5p XIST miRanda starBase2
1703 chrX 73045745 73045745 1 - G A rs41303699 73045760 - 73045740 73045780 41 TAGGCTTAAAGATGAGAGAACCTGGGACTGTTGAGCATGTT TAGGCTTAAAGATGAGAGAACCTGGGACTGTTGAGTATGTT < 41bp 1 0.0395414799265546 1 0.174728631973267 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045760 chrX:73045745 . . 0 36 hm5C_associated_SNPs_14982 0 0 1 1 73045724 73045748 lncRNA hsa-miR-561-5p XIST miRanda starBase2
1704 chrX 73045801 73045801 1 - G A rs12009304 73045800 - 73045780 73045820 41 GGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATCTCT GGACTGTGCCAACGCTACTTCTGGGTTTAATACCCATCTCT < 41bp 1 0.634618315326465 1 0.658986747264862 experiment 0.73076336934707 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045800 chrX:73045801 . . 0 20 hm5C_associated_SNPs_14983 0 0 1 1 73045796 73045817 lncRNA hsa-miR-665 XIST miRanda starBase2
1705 chrX 73045801 73045801 1 - G A rs12009304 73045803 - 73045783 73045823 41 GGTGGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATC GGTGGACTGTGCCAACGCTACTTCTGGGTTTAATACCCATC < 41bp 1 0.124097249948534 1 0.0926186442375183 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045803 chrX:73045801 . . 0 23 hm5C_associated_SNPs_14984 0 0 1 1 73045796 73045817 lncRNA hsa-miR-665 XIST miRanda starBase2
1706 chrX 73045801 73045801 1 - G A rs12009304 73045808 - 73045788 73045828 41 AATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAATAC AATTTGGTGGACTGTGCCAACGCTACTTCTGGGTTTAATAC < 41bp 1 0.381315971458235 1 0.0799453258514404 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045808 chrX:73045801 . . 0 28 hm5C_associated_SNPs_14985 0 0 1 1 73045796 73045817 lncRNA hsa-miR-665 XIST miRanda starBase2
1707 chrX 73045801 73045801 1 - G A rs12009304 73045811 - 73045791 73045831 41 AATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAA AATAATTTGGTGGACTGTGCCAACGCTACTTCTGGGTTTAA < 41bp 1 0.293926615467813 1 0.563978016376495 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045811 chrX:73045801 . . 0 31 hm5C_associated_SNPs_14986 0 0 1 1 73045796 73045817 lncRNA hsa-miR-665 XIST miRanda starBase2
1708 chrX 73045801 73045801 1 - G A rs12009304 73045812 - 73045792 73045832 41 AAATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTA AAATAATTTGGTGGACTGTGCCAACGCTACTTCTGGGTTTA < 41bp 1 0.0435938466465326 1 0.197122812271118 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045812 chrX:73045801 . . 0 32 hm5C_associated_SNPs_14987 0 0 1 1 73045796 73045817 lncRNA hsa-miR-665 XIST miRanda starBase2
1709 chrX 73045807 73045807 1 - C T rs180926896 73045800 - 73045780 73045820 41 GGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATCTCT GGACTGTGCCAACACTACTCCTGGGTTTAATACCCATCTCT < 41bp 1 0.51117343076411 1 0.557793200016022 experiment 0.977653138471781 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045800 chrX:73045807 . . 0 14 hm5C_associated_SNPs_14988 0 0 1 1 73045796 73045817 lncRNA hsa-miR-665 XIST miRanda starBase2
1710 chrX 73045807 73045807 1 - C T rs180926896 73045803 - 73045783 73045823 41 GGTGGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATC GGTGGACTGTGCCAACACTACTCCTGGGTTTAATACCCATC < 41bp 1 0.337421386664246 1 0.198671340942383 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045803 chrX:73045807 . . 0 17 hm5C_associated_SNPs_14989 0 0 1 1 73045796 73045817 lncRNA hsa-miR-665 XIST miRanda starBase2
1711 chrX 73045807 73045807 1 - C T rs180926896 73045808 - 73045788 73045828 41 AATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAATAC AATTTGGTGGACTGTGCCAACACTACTCCTGGGTTTAATAC < 41bp 1 0.350942281124576 1 0.0360265076160431 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045808 chrX:73045807 . . 0 22 hm5C_associated_SNPs_14990 0 0 1 1 73045796 73045817 lncRNA hsa-miR-665 XIST miRanda starBase2
1712 chrX 73045807 73045807 1 - C T rs180926896 73045811 - 73045791 73045831 41 AATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAA AATAATTTGGTGGACTGTGCCAACACTACTCCTGGGTTTAA < 41bp 1 0.45546575616072 1 0.400877863168716 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045811 chrX:73045807 . . 0 25 hm5C_associated_SNPs_14991 0 0 1 1 73045796 73045817 lncRNA hsa-miR-665 XIST miRanda starBase2
1713 chrX 73045807 73045807 1 - C T rs180926896 73045812 - 73045792 73045832 41 AAATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTA AAATAATTTGGTGGACTGTGCCAACACTACTCCTGGGTTTA < 41bp 1 0.0314470005245026 1 0.17556357383728 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045812 chrX:73045807 . . 0 26 hm5C_associated_SNPs_14992 0 0 1 1 73045796 73045817 lncRNA hsa-miR-665 XIST miRanda starBase2
1714 chrX 73045809 73045809 1 - T C rs16992442 73045800 - 73045780 73045820 41 GGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATCTCT GGACTGTGCCAGCGCTACTCCTGGGTTTAATACCCATCTCT < 41bp 1 0.632270059121515 1 0.589413940906525 experiment 0.735459881756969 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045800 chrX:73045809 . . 0 12 hm5C_associated_SNPs_14993 0 0 1 3 73045796 73045817 lncRNA hsa-miR-665 XIST miRanda starBase2
1715 chrX 73045809 73045809 1 - T C rs16992442 73045800 - 73045780 73045820 41 GGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATCTCT GGACTGTGCCAGCGCTACTCCTGGGTTTAATACCCATCTCT < 41bp 1 0.632270059121515 1 0.589413940906525 experiment 0.735459881756969 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045800 chrX:73045809 . . 0 12 hm5C_associated_SNPs_14993 0 0 1 3 73045808 73045832 lncRNA hsa-miR-1271-5p XIST miRanda starBase2
1716 chrX 73045809 73045809 1 - T C rs16992442 73045800 - 73045780 73045820 41 GGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATCTCT GGACTGTGCCAGCGCTACTCCTGGGTTTAATACCCATCTCT < 41bp 1 0.632270059121515 1 0.589413940906525 experiment 0.735459881756969 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045800 chrX:73045809 . . 0 12 hm5C_associated_SNPs_14993 0 0 1 3 73045808 73045835 lncRNA hsa-miR-96-5p XIST miRanda starBase2
1717 chrX 73045809 73045809 1 - T C rs16992442 73045803 - 73045783 73045823 41 GGTGGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATC GGTGGACTGTGCCAGCGCTACTCCTGGGTTTAATACCCATC < 41bp 1 0.300529048092497 1 0.32965612411499 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045803 chrX:73045809 . . 0 15 hm5C_associated_SNPs_14994 0 0 1 3 73045796 73045817 lncRNA hsa-miR-665 XIST miRanda starBase2
1718 chrX 73045809 73045809 1 - T C rs16992442 73045803 - 73045783 73045823 41 GGTGGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATC GGTGGACTGTGCCAGCGCTACTCCTGGGTTTAATACCCATC < 41bp 1 0.300529048092497 1 0.32965612411499 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045803 chrX:73045809 . . 0 15 hm5C_associated_SNPs_14994 0 0 1 3 73045808 73045832 lncRNA hsa-miR-1271-5p XIST miRanda starBase2
1719 chrX 73045809 73045809 1 - T C rs16992442 73045803 - 73045783 73045823 41 GGTGGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATC GGTGGACTGTGCCAGCGCTACTCCTGGGTTTAATACCCATC < 41bp 1 0.300529048092497 1 0.32965612411499 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045803 chrX:73045809 . . 0 15 hm5C_associated_SNPs_14994 0 0 1 3 73045808 73045835 lncRNA hsa-miR-96-5p XIST miRanda starBase2
1720 chrX 73045809 73045809 1 - T C rs16992442 73045808 - 73045788 73045828 41 AATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAATAC AATTTGGTGGACTGTGCCAGCGCTACTCCTGGGTTTAATAC < 41bp 1 0.38012652306919 1 0.0703544318675995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045808 chrX:73045809 . . 0 20 hm5C_associated_SNPs_14995 0 0 1 3 73045796 73045817 lncRNA hsa-miR-665 XIST miRanda starBase2
1721 chrX 73045809 73045809 1 - T C rs16992442 73045808 - 73045788 73045828 41 AATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAATAC AATTTGGTGGACTGTGCCAGCGCTACTCCTGGGTTTAATAC < 41bp 1 0.38012652306919 1 0.0703544318675995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045808 chrX:73045809 . . 0 20 hm5C_associated_SNPs_14995 0 0 1 3 73045808 73045832 lncRNA hsa-miR-1271-5p XIST miRanda starBase2
1722 chrX 73045809 73045809 1 - T C rs16992442 73045808 - 73045788 73045828 41 AATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAATAC AATTTGGTGGACTGTGCCAGCGCTACTCCTGGGTTTAATAC < 41bp 1 0.38012652306919 1 0.0703544318675995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045808 chrX:73045809 . . 0 20 hm5C_associated_SNPs_14995 0 0 1 3 73045808 73045835 lncRNA hsa-miR-96-5p XIST miRanda starBase2
1723 chrX 73045809 73045809 1 - T C rs16992442 73045811 - 73045791 73045831 41 AATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAA AATAATTTGGTGGACTGTGCCAGCGCTACTCCTGGGTTTAA < 41bp 1 0.472955054461466 1 0.680680096149445 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045811 chrX:73045809 . . 0 23 hm5C_associated_SNPs_14996 0 0 1 3 73045796 73045817 lncRNA hsa-miR-665 XIST miRanda starBase2
1724 chrX 73045809 73045809 1 - T C rs16992442 73045811 - 73045791 73045831 41 AATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAA AATAATTTGGTGGACTGTGCCAGCGCTACTCCTGGGTTTAA < 41bp 1 0.472955054461466 1 0.680680096149445 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045811 chrX:73045809 . . 0 23 hm5C_associated_SNPs_14996 0 0 1 3 73045808 73045832 lncRNA hsa-miR-1271-5p XIST miRanda starBase2
1725 chrX 73045809 73045809 1 - T C rs16992442 73045811 - 73045791 73045831 41 AATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAA AATAATTTGGTGGACTGTGCCAGCGCTACTCCTGGGTTTAA < 41bp 1 0.472955054461466 1 0.680680096149445 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045811 chrX:73045809 . . 0 23 hm5C_associated_SNPs_14996 0 0 1 3 73045808 73045835 lncRNA hsa-miR-96-5p XIST miRanda starBase2
1726 chrX 73045809 73045809 1 - T C rs16992442 73045812 - 73045792 73045832 41 AAATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTA AAATAATTTGGTGGACTGTGCCAGCGCTACTCCTGGGTTTA < 41bp 1 0.1016179505465 1 0.48116534948349 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045812 chrX:73045809 . . 0 24 hm5C_associated_SNPs_14997 0 0 1 3 73045796 73045817 lncRNA hsa-miR-665 XIST miRanda starBase2
1727 chrX 73045809 73045809 1 - T C rs16992442 73045812 - 73045792 73045832 41 AAATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTA AAATAATTTGGTGGACTGTGCCAGCGCTACTCCTGGGTTTA < 41bp 1 0.1016179505465 1 0.48116534948349 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045812 chrX:73045809 . . 0 24 hm5C_associated_SNPs_14997 0 0 1 3 73045808 73045832 lncRNA hsa-miR-1271-5p XIST miRanda starBase2
1728 chrX 73045809 73045809 1 - T C rs16992442 73045812 - 73045792 73045832 41 AAATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTA AAATAATTTGGTGGACTGTGCCAGCGCTACTCCTGGGTTTA < 41bp 1 0.1016179505465 1 0.48116534948349 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045812 chrX:73045809 . . 0 24 hm5C_associated_SNPs_14997 0 0 1 3 73045808 73045835 lncRNA hsa-miR-96-5p XIST miRanda starBase2
1729 chrX 73046774 73046774 1 - C A rs191884965 73046754 - 73046734 73046774 41 GTTGGATGGAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAGA TTTGGATGGAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAGA < 41bp 1 0.523418005259652 1 0.155743896961212 experiment 0.953163989480696 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046754 chrX:73046774 . . 0 1 hm5C_associated_SNPs_15005 0 0 1 1 73046772 73046795 lncRNA hsa-miR-510-5p XIST miRanda starBase2
1730 chrX 73046774 73046774 1 - C A rs191884965 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCGAAGGCCTGATTTGGATGGAAGTCTC < 41bp 1 0.304431196502295 1 0.319349765777588 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046774 . . 0 26 hm5C_associated_SNPs_15006 0 0 1 1 73046772 73046795 lncRNA hsa-miR-510-5p XIST miRanda starBase2
1731 chrX 73046774 73046774 1 - C A rs191884965 73046786 - 73046766 73046806 41 AGAGGGTGGCCTGAATTGGACCGAAGGCCTGAGTTGGATGG AGAGGGTGGCCTGAATTGGACCGAAGGCCTGATTTGGATGG < 41bp 1 0.348220354701879 1 0.177191168069839 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046786 chrX:73046774 . . 0 33 hm5C_associated_SNPs_15007 0 0 1 1 73046772 73046795 lncRNA hsa-miR-510-5p XIST miRanda starBase2
1732 chrX 73047076 73047076 1 - G A rs187945496 73047096 - 73047076 73047116 41 GGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTGCAGAAC GGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTGCAGAAT < 41bp 1 0.103390809016814 1 0.293791383504868 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047096 chrX:73047076 . . 0 41 hm5C_associated_SNPs_15008 0 0 1 2 73047059 73047080 lncRNA hsa-miR-5691 XIST miRanda starBase2
1733 chrX 73047076 73047076 1 - G A rs187945496 73047096 - 73047076 73047116 41 GGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTGCAGAAC GGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTGCAGAAT < 41bp 1 0.103390809016814 1 0.293791383504868 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047096 chrX:73047076 . . 0 41 hm5C_associated_SNPs_15008 0 0 1 2 73047059 73047081 lncRNA hsa-miR-6805-3p XIST miRanda starBase2
1734 chrX 100647142 100647142 1 + A G rs190593323 100647138 + 100647118 100647158 41 TTCCTTATCTGTCAATATGTCTGAATCCTCGCTTGTTGGTT TTCCTTATCTGTCAATATGTCTGAGTCCTCGCTTGTTGGTT < 41bp 1 0.480039872863917 1 0.355627238750458 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL36A ENSG00000241343;ENSG00000257529 intronic Human other chrX:100647138 chrX:100647142 . . 0 25 hm5C_associated_SNPs_15015 0 0 1 4 100647141 100647164 mRNA hsa-miR-301a RPL36A miRanda miRanda
1735 chrX 100647142 100647142 1 + A G rs190593323 100647138 + 100647118 100647158 41 TTCCTTATCTGTCAATATGTCTGAATCCTCGCTTGTTGGTT TTCCTTATCTGTCAATATGTCTGAGTCCTCGCTTGTTGGTT < 41bp 1 0.480039872863917 1 0.355627238750458 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL36A ENSG00000241343;ENSG00000257529 intronic Human other chrX:100647138 chrX:100647142 . . 0 25 hm5C_associated_SNPs_15015 0 0 1 4 100647142 100647164 mRNA hsa-miR-130b RPL36A miRanda miRanda
1736 chrX 100647142 100647142 1 + A G rs190593323 100647138 + 100647118 100647158 41 TTCCTTATCTGTCAATATGTCTGAATCCTCGCTTGTTGGTT TTCCTTATCTGTCAATATGTCTGAGTCCTCGCTTGTTGGTT < 41bp 1 0.480039872863917 1 0.355627238750458 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL36A ENSG00000241343;ENSG00000257529 intronic Human other chrX:100647138 chrX:100647142 . . 0 25 hm5C_associated_SNPs_15015 0 0 1 4 100647142 100647164 mRNA hsa-miR-454 RPL36A miRanda miRanda
1737 chrX 100647142 100647142 1 + A G rs190593323 100647138 + 100647118 100647158 41 TTCCTTATCTGTCAATATGTCTGAATCCTCGCTTGTTGGTT TTCCTTATCTGTCAATATGTCTGAGTCCTCGCTTGTTGGTT < 41bp 1 0.480039872863917 1 0.355627238750458 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL36A ENSG00000241343;ENSG00000257529 intronic Human other chrX:100647138 chrX:100647142 . . 0 25 hm5C_associated_SNPs_15015 0 0 1 4 100647141 100647164 mRNA hsa-miR-301b RPL36A miRanda miRanda
1738 chrX 135127228 135127228 1 + G A rs180710014 135127220 + 135127200 135127240 41 CTGACACTTAACCAGAGTACCAGTTCTCGTGATGTGAATTA CTGACACTTAACCAGAGTACCAGTTCTCATGATGTGAATTA < 41bp 1 0.192693090244147 1 0.129339188337326 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC9A6 ENSG00000198689 UTR3 Human protein_coding chrX:135127220 chrX:135127228 . . 0 29 hm5C_associated_SNPs_15041 0 0 1 2 135127208 135127228 mRNA hsa-miR-146a SLC9A6 miRanda miRanda
1739 chrX 135127228 135127228 1 + G A rs180710014 135127220 + 135127200 135127240 41 CTGACACTTAACCAGAGTACCAGTTCTCGTGATGTGAATTA CTGACACTTAACCAGAGTACCAGTTCTCATGATGTGAATTA < 41bp 1 0.192693090244147 1 0.129339188337326 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC9A6 ENSG00000198689 UTR3 Human protein_coding chrX:135127220 chrX:135127228 . . 0 29 hm5C_associated_SNPs_15041 0 0 1 2 135127206 135127228 mRNA hsa-miR-146b-5p SLC9A6 miRanda miRanda
1740 chrX 135594255 135594255 1 + C G rs185621465 135594249 + 135594229 135594269 41 GGTAATTACTAGTAGTGTTACATGAACATGTGCATAGTGGT GGTAATTACTAGTAGTGTTACATGAAGATGTGCATAGTGGT < 41bp 1 0.661986711706357 1 0.101607650518417 experiment 0.676026576587287 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTATSF1 ENSG00000102241 UTR3 Human protein_coding chrX:135594249 chrX:135594255 . . 0 27 hm5C_associated_SNPs_15042 0 0 1 1 135594255 135594277 mRNA hsa-miR-324-5p HTATSF1 miRanda miRanda
1741 chrX 154005239 154005239 1 + A G rs7878787 154005227 + 154005207 154005247 41 TTGTTGCTGAGAGAGTGGAACATAGGTCCTAGACAGGGTGA TTGTTGCTGAGAGAGTGGAACATAGGTCCTAGGCAGGGTGA < 41bp 1 0.491118414067658 1 0.171545952558517 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DKC1 ENSG00000130826 UTR3 Human protein_coding chrX:154005227 chrX:154005239 . . 0 33 hm5C_associated_SNPs_15078 0 0 1 3 154005222 154005246 mRNA hsa-miR-10a DKC1 miRanda miRanda
1742 chrX 154005239 154005239 1 + A G rs7878787 154005227 + 154005207 154005247 41 TTGTTGCTGAGAGAGTGGAACATAGGTCCTAGACAGGGTGA TTGTTGCTGAGAGAGTGGAACATAGGTCCTAGGCAGGGTGA < 41bp 1 0.491118414067658 1 0.171545952558517 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DKC1 ENSG00000130826 UTR3 Human protein_coding chrX:154005227 chrX:154005239 . . 0 33 hm5C_associated_SNPs_15078 0 0 1 3 154005222 154005246 mRNA hsa-miR-10b DKC1 miRanda miRanda
1743 chrX 154005239 154005239 1 + A G rs7878787 154005227 + 154005207 154005247 41 TTGTTGCTGAGAGAGTGGAACATAGGTCCTAGACAGGGTGA TTGTTGCTGAGAGAGTGGAACATAGGTCCTAGGCAGGGTGA < 41bp 1 0.491118414067658 1 0.171545952558517 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DKC1 ENSG00000130826 UTR3 Human protein_coding chrX:154005227 chrX:154005239 . . 0 33 hm5C_associated_SNPs_15078 0 0 1 3 154005226 154005245 mRNA hsa-miR-339-5p DKC1 miRanda miRanda
1744 chrX 154005239 154005239 1 + A G rs7878787 154005235 + 154005215 154005255 41 GAGAGAGTGGAACATAGGTCCTAGACAGGGTGAAGAGTTCT GAGAGAGTGGAACATAGGTCCTAGGCAGGGTGAAGAGTTCT < 41bp 1 0.681016176767292 1 0.164220988750458 experiment 0.637967646465417 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DKC1 ENSG00000130826 UTR3 Human protein_coding chrX:154005235 chrX:154005239 . . 0 25 hm5C_associated_SNPs_15079 0 0 1 3 154005222 154005246 mRNA hsa-miR-10a DKC1 miRanda miRanda
1745 chrX 154005239 154005239 1 + A G rs7878787 154005235 + 154005215 154005255 41 GAGAGAGTGGAACATAGGTCCTAGACAGGGTGAAGAGTTCT GAGAGAGTGGAACATAGGTCCTAGGCAGGGTGAAGAGTTCT < 41bp 1 0.681016176767292 1 0.164220988750458 experiment 0.637967646465417 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DKC1 ENSG00000130826 UTR3 Human protein_coding chrX:154005235 chrX:154005239 . . 0 25 hm5C_associated_SNPs_15079 0 0 1 3 154005222 154005246 mRNA hsa-miR-10b DKC1 miRanda miRanda
1746 chrX 154005239 154005239 1 + A G rs7878787 154005235 + 154005215 154005255 41 GAGAGAGTGGAACATAGGTCCTAGACAGGGTGAAGAGTTCT GAGAGAGTGGAACATAGGTCCTAGGCAGGGTGAAGAGTTCT < 41bp 1 0.681016176767292 1 0.164220988750458 experiment 0.637967646465417 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DKC1 ENSG00000130826 UTR3 Human protein_coding chrX:154005235 chrX:154005239 . . 0 25 hm5C_associated_SNPs_15079 0 0 1 3 154005226 154005245 mRNA hsa-miR-339-5p DKC1 miRanda miRanda
1747 chr15 74335395 74335395 1 + C T ACC 74335388 + 74335368 74335408 41 TGACCTCCAGCTGGAAGGCCCCAGCACCCTCAGGGTCCTGG TGACCTCCAGCTGGAAGGCCCCAGCACTCTCAGGGTCCTGG < 41bp 1 0.151705878865535 1 0.120758384466171 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74335388 chr15:74335395 synonymous SNV . 0 28 hm5C_associated_SNPs_15081 0 0 0 1 74335383 74335405 mRNA hsa-miR-504 PML miRanda miRanda
1748 chrX 49093667 49093667 1 + T A ACC 49093654 + 49093634 49093674 41 GATCAACCCTGCGGTGGGCTCTGGCCTCAGCCCTCTGCTGC GATCAACCCTGCGGTGGGCTCTGGCCTCAGCCCACTGCTGC < 41bp 1 0.785848107997862 1 0.516132950782776 experiment 0.428303784004277 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49093654 chrX:49093667 synonymous SNV . 0 34 hm5C_associated_SNPs_15113 0 0 1 1 49093664 49093683 mRNA hsa-miR-31 CCDC22 miRanda miRanda
1749 chr16 31121421 31121421 1 + C A ACC 31121439 + 31121419 31121459 41 TTCCAGAAGCTGACAGACTTCCCTCCGGTGAGTGCTGGGCC TTACAGAAGCTGACAGACTTCCCTCCGGTGAGTGCTGGGCC < 41bp 1 0.0953749123812944 1 0.106821596622467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121439 chr16:31121421 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_15126 0 0 1 2 31121403 31121421 mRNA hsa-miR-124 BCKDK miRanda miRanda
1750 chr16 31121421 31121421 1 + C A ACC 31121439 + 31121419 31121459 41 TTCCAGAAGCTGACAGACTTCCCTCCGGTGAGTGCTGGGCC TTACAGAAGCTGACAGACTTCCCTCCGGTGAGTGCTGGGCC < 41bp 1 0.0953749123812944 1 0.106821596622467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121439 chr16:31121421 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_15126 0 0 1 2 31121400 31121421 mRNA hsa-miR-506 BCKDK miRanda miRanda
1751 chr17 30535210 30535210 1 + T C ACC 30535224 + 30535204 30535244 41 AGTATTTCACCTACTGATTTCTGCAGGAAACACAAAATGCC AGTATTCCACCTACTGATTTCTGCAGGAAACACAAAATGCC < 41bp 1 0.759685936765197 1 0.762610197067261 experiment 0.480628126469606 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30535224 chr17:30535210 nonsynonymous SNV 0.993 0 7 hm5C_associated_SNPs_15169 0 0 1 3 30535191 30535210 mRNA hsa-miR-200b RHOT1 miRanda miRanda
1752 chr17 30535210 30535210 1 + T C ACC 30535224 + 30535204 30535244 41 AGTATTTCACCTACTGATTTCTGCAGGAAACACAAAATGCC AGTATTCCACCTACTGATTTCTGCAGGAAACACAAAATGCC < 41bp 1 0.759685936765197 1 0.762610197067261 experiment 0.480628126469606 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30535224 chr17:30535210 nonsynonymous SNV 0.993 0 7 hm5C_associated_SNPs_15169 0 0 1 3 30535188 30535210 mRNA hsa-miR-200c RHOT1 miRanda miRanda
1753 chr17 30535210 30535210 1 + T C ACC 30535224 + 30535204 30535244 41 AGTATTTCACCTACTGATTTCTGCAGGAAACACAAAATGCC AGTATTCCACCTACTGATTTCTGCAGGAAACACAAAATGCC < 41bp 1 0.759685936765197 1 0.762610197067261 experiment 0.480628126469606 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30535224 chr17:30535210 nonsynonymous SNV 0.993 0 7 hm5C_associated_SNPs_15169 0 0 1 3 30535186 30535210 mRNA hsa-miR-429 RHOT1 miRanda miRanda
1754 chr9 100079354 100079354 1 + A C ACC 100079373 + 100079353 100079393 41 AACTATGCCCTGCTGGGCAACCGGAAGGCTCTCGCCCAGCT ACCTATGCCCTGCTGGGCAACCGGAAGGCTCTCGCCCAGCT < 41bp 1 0.724589660599808 1 0.594037592411041 experiment 0.550820678800385 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100079373 chr9:100079354 nonsynonymous SNV 0.985 3 2 hm5C_associated_SNPs_15219 0 0 1 2 100079347 100079366 mRNA hsa-miR-103 KIAA1529 miRanda miRanda
1755 chr9 100079354 100079354 1 + A C ACC 100079373 + 100079353 100079393 41 AACTATGCCCTGCTGGGCAACCGGAAGGCTCTCGCCCAGCT ACCTATGCCCTGCTGGGCAACCGGAAGGCTCTCGCCCAGCT < 41bp 1 0.724589660599808 1 0.594037592411041 experiment 0.550820678800385 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100079373 chr9:100079354 nonsynonymous SNV 0.985 3 2 hm5C_associated_SNPs_15219 0 0 1 2 100079347 100079366 mRNA hsa-miR-107 KIAA1529 miRanda miRanda
1756 chrX 153669455 153669455 1 + C A ACC 153669437 + 153669417 153669457 41 CTTCACCGGAGCTGCTCTCACCACAGATTGAGTGCCATCTA CTTCACCGGAGCTGCTCTCACCACAGATTGAGTGCCATATA < 41bp 1 0.723586049147844 1 0.507371068000793 experiment 0.552827901704312 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GDI1 ENSG00000203879 CDS Human protein_coding chrX:153669437 chrX:153669455 synonymous SNV . 0 39 hm5C_associated_SNPs_15221 0 0 1 3 153669455 153669478 mRNA hsa-miR-103 GDI1 miRanda miRanda
1757 chrX 153669455 153669455 1 + C A ACC 153669437 + 153669417 153669457 41 CTTCACCGGAGCTGCTCTCACCACAGATTGAGTGCCATCTA CTTCACCGGAGCTGCTCTCACCACAGATTGAGTGCCATATA < 41bp 1 0.723586049147844 1 0.507371068000793 experiment 0.552827901704312 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GDI1 ENSG00000203879 CDS Human protein_coding chrX:153669437 chrX:153669455 synonymous SNV . 0 39 hm5C_associated_SNPs_15221 0 0 1 3 153669455 153669478 mRNA hsa-miR-107 GDI1 miRanda miRanda
1758 chrX 153669455 153669455 1 + C A ACC 153669437 + 153669417 153669457 41 CTTCACCGGAGCTGCTCTCACCACAGATTGAGTGCCATCTA CTTCACCGGAGCTGCTCTCACCACAGATTGAGTGCCATATA < 41bp 1 0.723586049147844 1 0.507371068000793 experiment 0.552827901704312 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GDI1 ENSG00000203879 CDS Human protein_coding chrX:153669437 chrX:153669455 synonymous SNV . 0 39 hm5C_associated_SNPs_15221 0 0 1 3 153669434 153669455 mRNA hsa-miR-183 GDI1 miRanda miRanda
1759 chr19 1272166 1272166 1 + C T BLCA 1272179 + 1272159 1272199 41 GTGCTTGCCCAGAAGAGGCGCATCTGTCCTCTCAGAGCCAT GTGCTTGTCCAGAAGAGGCGCATCTGTCCTCTCAGAGCCAT < 41bp 1 0.134396396672642 1 0.178918033838272 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272179 chr19:1272166 synonymous SNV . 0 8 hm5C_associated_SNPs_15237 0 0 1 1 1272148 1272168 mRNA hsa-miR-31 CIRBP miRanda miRanda
1760 chr19 1272166 1272166 1 + C T BLCA 1272182 + 1272162 1272202 41 CTTGCCCAGAAGAGGCGCATCTGTCCTCTCAGAGCCATTTC CTTGTCCAGAAGAGGCGCATCTGTCCTCTCAGAGCCATTTC < 41bp 1 0.332576653366225 1 0.0638211667537689 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272182 chr19:1272166 synonymous SNV . 0 5 hm5C_associated_SNPs_15238 0 0 1 1 1272148 1272168 mRNA hsa-miR-31 CIRBP miRanda miRanda
1761 chr10 135197569 135197569 1 + T A BLCA 135197583 + 135197563 135197603 41 TCTTCCTGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC TCTTCCAGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC < 41bp 1 0.0771531064538299 1 0.0571873784065247 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PAOX ENSG00000148832 CDS Human protein_coding chr10:135197583 chr10:135197569 nonsynonymous SNV 0.997 5 7 hm5C_associated_SNPs_15241 0 0 0 2 135197569 135197599 mRNA hsa-miR-149 PAOX miRanda miRanda
1762 chr10 135197569 135197569 1 + T A BLCA 135197583 + 135197563 135197603 41 TCTTCCTGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC TCTTCCAGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC < 41bp 1 0.0771531064538299 1 0.0571873784065247 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PAOX ENSG00000148832 CDS Human protein_coding chr10:135197583 chr10:135197569 nonsynonymous SNV 0.997 5 7 hm5C_associated_SNPs_15241 0 0 0 2 135197561 135197580 mRNA hsa-miR-371-5p PAOX miRanda miRanda
1763 chr2 157406241 157406241 1 + G A BLCA 157406248 + 157406228 157406268 41 ACCCCCAGACAGGGAAAGTGCGTGTGAGCGGCGCACGGTGC ACCCCCAGACAGGAAAAGTGCGTGTGAGCGGCGCACGGTGC < 41bp 1 0.54557571769621 1 0.352708637714386 experiment 0.90884856460758 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157406248 chr2:157406241 synonymous SNV . 0 14 hm5C_associated_SNPs_15295 0 0 0 1 157406220 157406242 mRNA hsa-miR-339-5p GPD2 miRanda miRanda
1764 chr14 60591527 60591527 1 + C G BLCA 60591543 + 60591523 60591563 41 AGTTCTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG AGTTGTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG < 41bp 1 0.218788434723215 1 0.274068534374237 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591543 chr14:60591527 nonsynonymous SNV 0.591 0 5 hm5C_associated_SNPs_15371 0 0 1 2 60591525 60591546 mRNA hsa-miR-214 C14orf135 miRanda miRanda
1765 chr14 60591527 60591527 1 + C G BLCA 60591543 + 60591523 60591563 41 AGTTCTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG AGTTGTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG < 41bp 1 0.218788434723215 1 0.274068534374237 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591543 chr14:60591527 nonsynonymous SNV 0.591 0 5 hm5C_associated_SNPs_15371 0 0 1 2 60591522 60591550 mRNA hsa-miR-421 C14orf135 miRanda miRanda
1766 chrX 73044223 73044223 1 - T A BLCA 73044221 - 73044201 73044241 41 AAGGCACCATATAAATGTAACTGTTGATTTTCTCACTTGGT AAGGCACCATATAAATGTTACTGTTGATTTTCTCACTTGGT < 41bp 1 0.0269081556668029 1 0.0689023435115814 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044221 chrX:73044223 . . 0 19 hm5C_associated_SNPs_15374 0 0 1 1 73044214 73044240 lncRNA hsa-miR-421 XIST miRanda starBase2
1767 chrX 73047089 73047089 1 - C A BLCA 73047076 - 73047056 73047096 41 CCTGCCTGATAGGTGCAGAACGTCGGCTATCAGAGCAAGCA CCTGCCTTATAGGTGCAGAACGTCGGCTATCAGAGCAAGCA < 41bp 1 0.248783530540416 1 0.127440392971039 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047076 chrX:73047089 . . 0 8 hm5C_associated_SNPs_15383 0 0 1 1 73047079 73047103 lncRNA hsa-miR-500a-3p XIST miRanda starBase2
1768 chrX 73047089 73047089 1 - C A BLCA 73047096 - 73047076 73047116 41 GGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTGCAGAAC GGCAGAGGGGCTTCCTAACCCCTGCCTTATAGGTGCAGAAC < 41bp 1 0.102125351240533 1 0.340937316417694 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047096 chrX:73047089 . . 0 28 hm5C_associated_SNPs_15384 0 0 1 1 73047079 73047103 lncRNA hsa-miR-500a-3p XIST miRanda starBase2
1769 chrX 73047089 73047089 1 - C A BLCA 73047098 - 73047078 73047118 41 GTGGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTGCAGA GTGGCAGAGGGGCTTCCTAACCCCTGCCTTATAGGTGCAGA < 41bp 1 0.175727238383216 1 0.38289549946785 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047098 chrX:73047089 . . 0 30 hm5C_associated_SNPs_15385 0 0 1 1 73047079 73047103 lncRNA hsa-miR-500a-3p XIST miRanda starBase2
1770 chrX 73047089 73047089 1 - C A BLCA 73047102 - 73047082 73047122 41 ATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTG ATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTTATAGGTG < 41bp 1 0.0993828702235452 1 0.149033308029175 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047102 chrX:73047089 . . 0 34 hm5C_associated_SNPs_15386 0 0 1 1 73047079 73047103 lncRNA hsa-miR-500a-3p XIST miRanda starBase2
1771 chrX 73047089 73047089 1 - C A BLCA 73047103 - 73047083 73047123 41 CATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGT CATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTTATAGGT < 41bp 1 0.0561458047935309 1 0.0454576015472412 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047103 chrX:73047089 . . 0 35 hm5C_associated_SNPs_15387 0 0 1 1 73047079 73047103 lncRNA hsa-miR-500a-3p XIST miRanda starBase2
1772 chrX 73047089 73047089 1 - C A BLCA 73047106 - 73047086 73047126 41 TGTCATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTGATA TGTCATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTTATA < 41bp 1 0.0746051224982496 1 0.15254008769989 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047106 chrX:73047089 . . 0 38 hm5C_associated_SNPs_15388 0 0 1 1 73047079 73047103 lncRNA hsa-miR-500a-3p XIST miRanda starBase2
1773 chr21 33032093 33032093 1 + A G BLCA 33032103 + 33032083 33032123 41 ATGGCGACGAAGGCCGTGTGCGTGCTGAAGGGCGACGGCCC ATGGCGACGAGGGCCGTGTGCGTGCTGAAGGGCGACGGCCC < 41bp 1 0.747032612976249 1 0.23314693570137 experiment 0.505934774047502 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOD1 ENSG00000142168 CDS Human protein_coding chr21:33032103 chr21:33032093 nonsynonymous SNV 0.902 1 11 hm5C_associated_SNPs_15403 0 0 1 1 33032088 33032109 mRNA hsa-miR-497 SOD1 miRanda miRanda
1774 chr12 22208204 22208204 1 + G C BLCA 22208197 + 22208177 22208217 41 AGCTCTACCTCACTAGATGCCATCATAGAATTTCTTAATTA AGCTCTACCTCACTAGATGCCATCATACAATTTCTTAATTA < 41bp 1 0.46639519676336 1 0.0304044485092163 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208197 chr12:22208204 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_15442 0 0 1 1 22208194 22208213 mRNA hsa-miR-539 CMAS miRanda miRanda
1775 chr7 140404733 140404733 1 + G C BLCA 140404750 + 140404730 140404770 41 ACTGAAGGTGTAGACTCAGCCTCACTCTGTACAAGTGGGTG ACTCAAGGTGTAGACTCAGCCTCACTCTGTACAAGTGGGTG < 41bp 1 0.210720575286028 1 0.172384738922119 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB2 ENSG00000090266 CDS Human protein_coding chr7:140404750 chr7:140404733 stoploss 0.552 0 4 hm5C_associated_SNPs_15452 0 0 1 1 140404732 140404753 mRNA hsa-miR-485-5p NDUFB2 miRanda miRanda
1776 chr7 65751506 65751506 1 + G C BLCA 65751509 + 65751489 65751529 41 TGTTTTCAGAGTGGAGAGATCTACAGACCAAGTAATCAAGC TGTTTTCAGAGTGGAGACATCTACAGACCAAGTAATCAAGC < 41bp 1 0.618713223271032 1 0.585058271884918 experiment 0.762573553457937 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65751509 chr7:65751506 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_15489 0 0 0 2 65751499 65751520 mRNA hsa-miR-133a TPST1 miRanda miRanda
1777 chr7 65751506 65751506 1 + G C BLCA 65751509 + 65751489 65751529 41 TGTTTTCAGAGTGGAGAGATCTACAGACCAAGTAATCAAGC TGTTTTCAGAGTGGAGACATCTACAGACCAAGTAATCAAGC < 41bp 1 0.618713223271032 1 0.585058271884918 experiment 0.762573553457937 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65751509 chr7:65751506 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_15489 0 0 0 2 65751499 65751520 mRNA hsa-miR-133b TPST1 miRanda miRanda
1778 chr11 65268881 65268881 1 + G A BLCA 65268891 + 65268871 65268911 41 GAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGCTGGTA GAGGTCTGTGAAAGAGATGTCCATTGGAGAAATGGCTGGTA < 41bp 1 0.158764764016538 1 0.256917715072632 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268891 chr11:65268881 . . 0 11 hm5C_associated_SNPs_15500 0 0 1 2 65268878 65268901 lncRNA hsa-miR-515-5p MALAT1 miRanda starBase2
1779 chr11 65268881 65268881 1 + G A BLCA 65268891 + 65268871 65268911 41 GAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGCTGGTA GAGGTCTGTGAAAGAGATGTCCATTGGAGAAATGGCTGGTA < 41bp 1 0.158764764016538 1 0.256917715072632 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268891 chr11:65268881 . . 0 11 hm5C_associated_SNPs_15500 0 0 1 2 65268880 65268901 lncRNA hsa-miR-519e-5p MALAT1 miRanda starBase2
1780 chr11 65268884 65268884 1 + G A BLCA 65268891 + 65268871 65268911 41 GAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGCTGGTA GAGGTCTGTGGAAAAGATGTCCATTGGAGAAATGGCTGGTA < 41bp 1 0.14560429484881 1 0.265716135501862 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268891 chr11:65268884 . . 0 14 hm5C_associated_SNPs_15501 0 0 1 2 65268878 65268901 lncRNA hsa-miR-515-5p MALAT1 miRanda starBase2
1781 chr11 65268884 65268884 1 + G A BLCA 65268891 + 65268871 65268911 41 GAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGCTGGTA GAGGTCTGTGGAAAAGATGTCCATTGGAGAAATGGCTGGTA < 41bp 1 0.14560429484881 1 0.265716135501862 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268891 chr11:65268884 . . 0 14 hm5C_associated_SNPs_15501 0 0 1 2 65268880 65268901 lncRNA hsa-miR-519e-5p MALAT1 miRanda starBase2
1782 chr11 65269080 65269080 1 + G A BLCA 65269082 + 65269062 65269102 41 AGATGCTATAGTACTATTGACAAACTGGGTTAGAGAAGGAG AGATGCTATAGTACTATTAACAAACTGGGTTAGAGAAGGAG < 41bp 1 0.167589250699627 1 0.441261559724808 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269082 chr11:65269080 . . 0 19 hm5C_associated_SNPs_15504 0 0 1 1 65269079 65269100 lncRNA hsa-miR-942-5p MALAT1 miRanda starBase2
1783 chr11 65269080 65269080 1 + G A BLCA 65269086 + 65269066 65269106 41 GCTATAGTACTATTGACAAACTGGGTTAGAGAAGGAGTGTA GCTATAGTACTATTAACAAACTGGGTTAGAGAAGGAGTGTA < 41bp 1 0.72696961879336 1 0.421612441539764 experiment 0.546060762413281 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269086 chr11:65269080 . . 0 15 hm5C_associated_SNPs_15505 0 0 1 1 65269079 65269100 lncRNA hsa-miR-942-5p MALAT1 miRanda starBase2
1784 chr20 42249548 42249548 1 + G A BLCA 42249532 + 42249512 42249552 41 TGGCTCACGACAGGAGACATCCACCTAAACCAGATTGATGC TGGCTCACGACAGGAGACATCCACCTAAACCAGATTAATGC < 41bp 1 0.124722943253865 1 0.0853811204433441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT52 ENSG00000101052 CDS Human protein_coding chr20:42249532 chr20:42249548 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_15603 0 0 1 3 42249544 42249565 mRNA hsa-miR-330-5p IFT52 miRanda miRanda
1785 chr20 42249548 42249548 1 + G A BLCA 42249532 + 42249512 42249552 41 TGGCTCACGACAGGAGACATCCACCTAAACCAGATTGATGC TGGCTCACGACAGGAGACATCCACCTAAACCAGATTAATGC < 41bp 1 0.124722943253865 1 0.0853811204433441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT52 ENSG00000101052 CDS Human protein_coding chr20:42249532 chr20:42249548 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_15603 0 0 1 3 42249547 42249565 mRNA hsa-miR-326 IFT52 miRanda miRanda
1786 chr20 42249548 42249548 1 + G A BLCA 42249532 + 42249512 42249552 41 TGGCTCACGACAGGAGACATCCACCTAAACCAGATTGATGC TGGCTCACGACAGGAGACATCCACCTAAACCAGATTAATGC < 41bp 1 0.124722943253865 1 0.0853811204433441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT52 ENSG00000101052 CDS Human protein_coding chr20:42249532 chr20:42249548 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_15603 0 0 1 3 42249548 42249565 mRNA hsa-miR-216b IFT52 miRanda miRanda
1787 chr17 16343359 16343359 1 + G A BLCA 16343379 + 16343359 16343399 41 GAAATCACTAATAGGAAGTGCCGTCAGAAGCGATAACTGAC AAAATCACTAATAGGAAGTGCCGTCAGAAGCGATAACTGAC < 41bp 1 0.0273362852111864 1 0.236116290092468 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD49A ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16343379 chr17:16343359 . . 0 1 hm5C_associated_SNPs_15642 0 0 1 1 16343350 16343366 mRNA hsa-miR-876-5p SNORD49A miRanda miRanda
1788 chr3 160122125 160122125 1 + G A BLCA 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATAATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT < 41bp 1 0.111115985521757 1 0.0568875074386597 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122125 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_15672 0 0 1 2 160122116 160122136 mRNA hsa-miR-205 SMC4 miRanda miRanda
1789 chr3 160122125 160122125 1 + G A BLCA 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATAATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT < 41bp 1 0.111115985521757 1 0.0568875074386597 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122125 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_15672 0 0 1 2 160122116 160122127 mRNA hsa-miR-324-5p SMC4 miRanda miRanda
1790 chr9 7103807 7103807 1 + G A BLCA 7103791 + 7103771 7103811 41 TGTCACTTGTGCCCATGCTGCTGGGGTACTGATGGAGCCTG TGTCACTTGTGCCCATGCTGCTGGGGTACTGATGGAACCTG < 41bp 1 0.754042828490084 1 0.76321804523468 experiment 0.491914343019831 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KDM4C ENSG00000107077 CDS Human protein_coding chr9:7103791 chr9:7103807 synonymous SNV . 0 37 hm5C_associated_SNPs_15743 0 0 0 1 7103800 7103820 mRNA hsa-miR-338-3p KDM4C miRanda miRanda
1791 chr9 37770008 37770008 1 + C G BLCA 37769995 + 37769975 37770015 41 CCTTGGAAACCCTTGTGTACCTGACTCCTGACTCAGAACAC CCTTGGAAACCCTTGTGTACCTGACTCCTGACTGAGAACAC < 41bp 1 0.421785815357069 1 0.0485954284667969 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37769995 chr9:37770008 stopgain 0.985 1 34 hm5C_associated_SNPs_15747 0 0 1 1 37770001 37770016 mRNA hsa-miR-335 RG9MTD3 miRanda miRanda
1792 chr9 37770008 37770008 1 + C G BLCA 37770013 + 37769993 37770033 41 ACCTGACTCCTGACTCAGAACACGGTATGTAGTTGAATGCA ACCTGACTCCTGACTGAGAACACGGTATGTAGTTGAATGCA < 41bp 1 0.729556964557886 1 0.685704708099365 experiment 0.540886070884228 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37770013 chr9:37770008 stopgain 0.985 1 16 hm5C_associated_SNPs_15748 0 0 1 1 37770001 37770016 mRNA hsa-miR-335 RG9MTD3 miRanda miRanda
1793 chr9 15453176 15453176 1 + A G BLCA 15453178 + 15453158 15453198 41 GTCATCAGGGAGACTGTGAACATGTCATTGTCATTACTGAC GTCATCAGGGAGACTGTGGACATGTCATTGTCATTACTGAC < 41bp 1 0.272785102244064 1 0.0722055733203888 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15453178 chr9:15453176 nonsynonymous SNV 0.998 4 19 hm5C_associated_SNPs_15775 0 0 1 5 15453157 15453177 mRNA hsa-miR-27a SNAPC3 miRanda miRanda
1794 chr9 15453176 15453176 1 + A G BLCA 15453178 + 15453158 15453198 41 GTCATCAGGGAGACTGTGAACATGTCATTGTCATTACTGAC GTCATCAGGGAGACTGTGGACATGTCATTGTCATTACTGAC < 41bp 1 0.272785102244064 1 0.0722055733203888 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15453178 chr9:15453176 nonsynonymous SNV 0.998 4 19 hm5C_associated_SNPs_15775 0 0 1 5 15453154 15453176 mRNA hsa-miR-212 SNAPC3 miRanda miRanda
1795 chr9 15453176 15453176 1 + A G BLCA 15453178 + 15453158 15453198 41 GTCATCAGGGAGACTGTGAACATGTCATTGTCATTACTGAC GTCATCAGGGAGACTGTGGACATGTCATTGTCATTACTGAC < 41bp 1 0.272785102244064 1 0.0722055733203888 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15453178 chr9:15453176 nonsynonymous SNV 0.998 4 19 hm5C_associated_SNPs_15775 0 0 1 5 15453157 15453177 mRNA hsa-miR-27b SNAPC3 miRanda miRanda
1796 chr9 15453176 15453176 1 + A G BLCA 15453178 + 15453158 15453198 41 GTCATCAGGGAGACTGTGAACATGTCATTGTCATTACTGAC GTCATCAGGGAGACTGTGGACATGTCATTGTCATTACTGAC < 41bp 1 0.272785102244064 1 0.0722055733203888 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15453178 chr9:15453176 nonsynonymous SNV 0.998 4 19 hm5C_associated_SNPs_15775 0 0 1 5 15453156 15453176 mRNA hsa-miR-128 SNAPC3 miRanda miRanda
1797 chr9 15453176 15453176 1 + A G BLCA 15453178 + 15453158 15453198 41 GTCATCAGGGAGACTGTGAACATGTCATTGTCATTACTGAC GTCATCAGGGAGACTGTGGACATGTCATTGTCATTACTGAC < 41bp 1 0.272785102244064 1 0.0722055733203888 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15453178 chr9:15453176 nonsynonymous SNV 0.998 4 19 hm5C_associated_SNPs_15775 0 0 1 5 15453155 15453176 mRNA hsa-miR-132 SNAPC3 miRanda miRanda
1798 chr11 120957741 120957741 1 + G C BLCA 120957753 + 120957733 120957773 41 CAGCTCTCGGGCATTGCATTCCTTTGGCATTAGGGATGGAG CAGCTCTCCGGCATTGCATTCCTTTGGCATTAGGGATGGAG < 41bp 1 0.0241778639074023 1 0.0932805836200714 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBCEL ENSG00000154114 CDS Human protein_coding chr11:120957753 chr11:120957741 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_15820 0 0 1 1 120957727 120957748 mRNA hsa-miR-365 TBCEL miRanda miRanda
1799 chr2 202141587 202141587 1 + G A BLCA 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTCAGGGATACTGTCTGATCATCAACAATCA < 41bp 1 0.231965525003329 1 0.101947814226151 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141587 nonsynonymous SNV 0.925 5 14 hm5C_associated_SNPs_15839 0 0 1 1 202141583 202141604 mRNA hsa-miR-383 CASP8 miRanda miRanda
1800 chr11 65273619 65273619 1 + G T BLCA 65273607 + 65273587 65273627 41 AGATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTT AGATGCTGGTGGTTGGCACTCCTGGTTTCCAGTACGGGGTT < 41bp 1 0.433617102818727 1 0.479976177215576 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273607 chr11:65273619 . . 0 33 hm5C_associated_SNPs_15872 0 0 1 1 65273604 65273625 lncRNA hsa-miR-1247-5p MALAT1 miRanda starBase2
1801 chr11 65273619 65273619 1 + G T BLCA 65273608 + 65273588 65273628 41 GATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTTC GATGCTGGTGGTTGGCACTCCTGGTTTCCAGTACGGGGTTC < 41bp 1 0.616089399986173 1 0.421976268291473 experiment 0.767821200027654 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273608 chr11:65273619 . . 0 32 hm5C_associated_SNPs_15873 0 0 1 1 65273604 65273625 lncRNA hsa-miR-1247-5p MALAT1 miRanda starBase2
1802 chr11 65273350 65273350 1 + G T BLCA 65273330 + 65273310 65273350 41 ACTGTAATGCTGGGTGGGAACATGTAACTTGTAGACTGGAG ACTGTAATGCTGGGTGGGAACATGTAACTTGTAGACTGGAT < 41bp 1 0.69405033121915 1 0.382556438446045 experiment 0.6118993375617 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273330 chr11:65273350 . . 0 41 hm5C_associated_SNPs_15877 0 0 1 3 65273341 65273365 lncRNA hsa-miR-105-5p MALAT1 miRanda starBase2
1803 chr11 65273350 65273350 1 + G T BLCA 65273330 + 65273310 65273350 41 ACTGTAATGCTGGGTGGGAACATGTAACTTGTAGACTGGAG ACTGTAATGCTGGGTGGGAACATGTAACTTGTAGACTGGAT < 41bp 1 0.69405033121915 1 0.382556438446045 experiment 0.6118993375617 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273330 chr11:65273350 . . 0 41 hm5C_associated_SNPs_15877 0 0 1 3 65273345 65273365 lncRNA hsa-miR-7853-5p MALAT1 miRanda starBase2
1804 chr11 65273350 65273350 1 + G T BLCA 65273330 + 65273310 65273350 41 ACTGTAATGCTGGGTGGGAACATGTAACTTGTAGACTGGAG ACTGTAATGCTGGGTGGGAACATGTAACTTGTAGACTGGAT < 41bp 1 0.69405033121915 1 0.382556438446045 experiment 0.6118993375617 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273330 chr11:65273350 . . 0 41 hm5C_associated_SNPs_15877 0 0 1 3 65273348 65273368 lncRNA hsa-miR-888-5p MALAT1 miRanda starBase2
1805 chr11 65273350 65273350 1 + G T BLCA 65273337 + 65273317 65273357 41 TGCTGGGTGGGAACATGTAACTTGTAGACTGGAGAAGATAG TGCTGGGTGGGAACATGTAACTTGTAGACTGGATAAGATAG < 41bp 1 0.699653400767593 1 0.114173710346222 experiment 0.600693198464815 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273337 chr11:65273350 . . 0 34 hm5C_associated_SNPs_15878 0 0 1 3 65273341 65273365 lncRNA hsa-miR-105-5p MALAT1 miRanda starBase2
1806 chr11 65273350 65273350 1 + G T BLCA 65273337 + 65273317 65273357 41 TGCTGGGTGGGAACATGTAACTTGTAGACTGGAGAAGATAG TGCTGGGTGGGAACATGTAACTTGTAGACTGGATAAGATAG < 41bp 1 0.699653400767593 1 0.114173710346222 experiment 0.600693198464815 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273337 chr11:65273350 . . 0 34 hm5C_associated_SNPs_15878 0 0 1 3 65273345 65273365 lncRNA hsa-miR-7853-5p MALAT1 miRanda starBase2
1807 chr11 65273350 65273350 1 + G T BLCA 65273337 + 65273317 65273357 41 TGCTGGGTGGGAACATGTAACTTGTAGACTGGAGAAGATAG TGCTGGGTGGGAACATGTAACTTGTAGACTGGATAAGATAG < 41bp 1 0.699653400767593 1 0.114173710346222 experiment 0.600693198464815 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273337 chr11:65273350 . . 0 34 hm5C_associated_SNPs_15878 0 0 1 3 65273348 65273368 lncRNA hsa-miR-888-5p MALAT1 miRanda starBase2
1808 chr22 18979420 18979420 1 + C T BLCA 18979435 + 18979415 18979455 41 AGGCCCGTCCTGGTGGAGTTCACCCTGCTGGAGATGGAGAA AGGCCTGTCCTGGTGGAGTTCACCCTGCTGGAGATGGAGAA < 41bp 1 0.255142952814818 1 0.258341133594513 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979435 chr22:18979420 . . 0 6 hm5C_associated_SNPs_15897 0 0 1 1 18979419 18979442 mRNA hsa-miR-125a-3p DGCR5 miRanda miRanda
1809 chr1 203834186 203834186 1 + G A BLCA 203834189 + 203834169 203834209 41 GGTTTTGATGAGTATATGAACCTTGTATTAGATGATGCAGA GGTTTTGATGAGTATATAAACCTTGTATTAGATGATGCAGA < 41bp 1 0.0753249002035857 1 0.134621679782867 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SNRPE ENSG00000182004 CDS Human protein_coding chr1:203834189 chr1:203834186 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_15976 0 0 1 2 203834175 203834197 mRNA hsa-miR-381 SNRPE miRanda miRanda
1810 chr1 203834186 203834186 1 + G A BLCA 203834189 + 203834169 203834209 41 GGTTTTGATGAGTATATGAACCTTGTATTAGATGATGCAGA GGTTTTGATGAGTATATAAACCTTGTATTAGATGATGCAGA < 41bp 1 0.0753249002035857 1 0.134621679782867 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SNRPE ENSG00000182004 CDS Human protein_coding chr1:203834189 chr1:203834186 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_15976 0 0 1 2 203834175 203834197 mRNA hsa-miR-300 SNRPE miRanda miRanda
1811 chr22 21965299 21965299 1 + G T BLCA 21965319 + 21965299 21965339 41 GAAAACTGGAAGCCAGCAACCAAAACCGACCAAGGTAAGAC TAAAACTGGAAGCCAGCAACCAAAACCGACCAAGGTAAGAC < 41bp 1 0.605857707831504 1 0.782130002975464 experiment 0.788284584336993 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2L3 ENSG00000185651 CDS Human protein_coding chr22:21965319 chr22:21965299 stopgain 1.000 1 1 hm5C_associated_SNPs_16028 0 0 1 1 21965286 21965309 mRNA hsa-miR-145 UBE2L3 miRanda miRanda
1812 chr1 227618492 227618492 1 + G T BLCA 227618502 + 227618482 227618522 41 CAGACAGAAGGATGTAAAGTCTGGAAAATACAGCCAGATCC CAGACAGAAGTATGTAAAGTCTGGAAAATACAGCCAGATCC < 41bp 1 0.744443291390149 1 0.634475231170654 experiment 0.511113417219702 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC42BPA;ZNF678 ENSG00000234277;ENSG00000242757 ncRNA_exonic Human other chr1:227618502 chr1:227618492 . . 0 11 hm5C_associated_SNPs_16055 0 0 0 1 227618485 227618505 lncRNA hsa-miR-499b-5p LINC01641 miRanda starBase2
1813 chr11 85977208 85977208 1 + G C BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATCATGAA < 41bp 1 0.179394170147215 1 0.130336463451385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977208 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16095 0 0 1 13 85977199 85977220 mRNA hsa-miR-25 EED miRanda miRanda
1814 chr11 85977208 85977208 1 + G C BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATCATGAA < 41bp 1 0.179394170147215 1 0.130336463451385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977208 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16095 0 0 1 13 85977199 85977220 mRNA hsa-miR-32 EED miRanda miRanda
1815 chr11 85977208 85977208 1 + G C BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATCATGAA < 41bp 1 0.179394170147215 1 0.130336463451385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977208 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16095 0 0 1 13 85977198 85977218 mRNA hsa-miR-33a EED miRanda miRanda
1816 chr11 85977208 85977208 1 + G C BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATCATGAA < 41bp 1 0.179394170147215 1 0.130336463451385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977208 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16095 0 0 1 13 85977199 85977220 mRNA hsa-miR-92a EED miRanda miRanda
1817 chr11 85977208 85977208 1 + G C BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATCATGAA < 41bp 1 0.179394170147215 1 0.130336463451385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977208 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16095 0 0 1 13 85977195 85977217 mRNA hsa-miR-181a EED miRanda miRanda
1818 chr11 85977208 85977208 1 + G C BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATCATGAA < 41bp 1 0.179394170147215 1 0.130336463451385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977208 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16095 0 0 1 13 85977195 85977217 mRNA hsa-miR-181b EED miRanda miRanda
1819 chr11 85977208 85977208 1 + G C BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATCATGAA < 41bp 1 0.179394170147215 1 0.130336463451385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977208 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16095 0 0 1 13 85977195 85977217 mRNA hsa-miR-181c EED miRanda miRanda
1820 chr11 85977208 85977208 1 + G C BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATCATGAA < 41bp 1 0.179394170147215 1 0.130336463451385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977208 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16095 0 0 1 13 85977204 85977225 mRNA hsa-miR-205 EED miRanda miRanda
1821 chr11 85977208 85977208 1 + G C BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATCATGAA < 41bp 1 0.179394170147215 1 0.130336463451385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977208 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16095 0 0 1 13 85977200 85977220 mRNA hsa-miR-363 EED miRanda miRanda
1822 chr11 85977208 85977208 1 + G C BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATCATGAA < 41bp 1 0.179394170147215 1 0.130336463451385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977208 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16095 0 0 1 13 85977199 85977220 mRNA hsa-miR-367 EED miRanda miRanda
1823 chr11 85977208 85977208 1 + G C BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATCATGAA < 41bp 1 0.179394170147215 1 0.130336463451385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977208 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16095 0 0 1 13 85977195 85977217 mRNA hsa-miR-181d EED miRanda miRanda
1824 chr11 85977208 85977208 1 + G C BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATCATGAA < 41bp 1 0.179394170147215 1 0.130336463451385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977208 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16095 0 0 1 13 85977199 85977220 mRNA hsa-miR-92b EED miRanda miRanda
1825 chr11 85977208 85977208 1 + G C BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATCATGAA < 41bp 1 0.179394170147215 1 0.130336463451385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977208 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16095 0 0 1 13 85977199 85977218 mRNA hsa-miR-33b EED miRanda miRanda
1826 chr11 85977209 85977209 1 + A T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGTTGAA < 41bp 1 0.163726994972108 1 0.0997744798660278 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977209 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16097 0 0 1 13 85977199 85977220 mRNA hsa-miR-25 EED miRanda miRanda
1827 chr11 85977209 85977209 1 + A T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGTTGAA < 41bp 1 0.163726994972108 1 0.0997744798660278 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977209 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16097 0 0 1 13 85977199 85977220 mRNA hsa-miR-32 EED miRanda miRanda
1828 chr11 85977209 85977209 1 + A T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGTTGAA < 41bp 1 0.163726994972108 1 0.0997744798660278 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977209 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16097 0 0 1 13 85977198 85977218 mRNA hsa-miR-33a EED miRanda miRanda
1829 chr11 85977209 85977209 1 + A T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGTTGAA < 41bp 1 0.163726994972108 1 0.0997744798660278 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977209 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16097 0 0 1 13 85977199 85977220 mRNA hsa-miR-92a EED miRanda miRanda
1830 chr11 85977209 85977209 1 + A T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGTTGAA < 41bp 1 0.163726994972108 1 0.0997744798660278 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977209 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16097 0 0 1 13 85977195 85977217 mRNA hsa-miR-181a EED miRanda miRanda
1831 chr11 85977209 85977209 1 + A T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGTTGAA < 41bp 1 0.163726994972108 1 0.0997744798660278 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977209 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16097 0 0 1 13 85977195 85977217 mRNA hsa-miR-181b EED miRanda miRanda
1832 chr11 85977209 85977209 1 + A T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGTTGAA < 41bp 1 0.163726994972108 1 0.0997744798660278 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977209 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16097 0 0 1 13 85977195 85977217 mRNA hsa-miR-181c EED miRanda miRanda
1833 chr11 85977209 85977209 1 + A T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGTTGAA < 41bp 1 0.163726994972108 1 0.0997744798660278 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977209 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16097 0 0 1 13 85977204 85977225 mRNA hsa-miR-205 EED miRanda miRanda
1834 chr11 85977209 85977209 1 + A T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGTTGAA < 41bp 1 0.163726994972108 1 0.0997744798660278 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977209 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16097 0 0 1 13 85977200 85977220 mRNA hsa-miR-363 EED miRanda miRanda
1835 chr11 85977209 85977209 1 + A T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGTTGAA < 41bp 1 0.163726994972108 1 0.0997744798660278 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977209 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16097 0 0 1 13 85977199 85977220 mRNA hsa-miR-367 EED miRanda miRanda
1836 chr11 85977209 85977209 1 + A T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGTTGAA < 41bp 1 0.163726994972108 1 0.0997744798660278 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977209 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16097 0 0 1 13 85977195 85977217 mRNA hsa-miR-181d EED miRanda miRanda
1837 chr11 85977209 85977209 1 + A T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGTTGAA < 41bp 1 0.163726994972108 1 0.0997744798660278 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977209 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16097 0 0 1 13 85977199 85977220 mRNA hsa-miR-92b EED miRanda miRanda
1838 chr11 85977209 85977209 1 + A T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGTTGAA < 41bp 1 0.163726994972108 1 0.0997744798660278 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977209 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16097 0 0 1 13 85977199 85977218 mRNA hsa-miR-33b EED miRanda miRanda
1839 chr12 54675607 54675607 1 + C G BLCA 54675598 + 54675578 54675618 41 GGTAATGAGAGATCCAAACACCAAGCGCTCCAGGGGCTTTG GGTAATGAGAGATCCAAACACCAAGCGCTGCAGGGGCTTTG < 41bp 1 0.346255891809729 1 0.397072494029999 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675598 chr12:54675607 nonsynonymous SNV 0.997 5 30 hm5C_associated_SNPs_16142 0 0 0 1 54675606 54675629 mRNA hsa-miR-19b HNRNPA1 miRanda miRanda
1840 chr12 54675607 54675607 1 + C G BLCA 54675599 + 54675579 54675619 41 GTAATGAGAGATCCAAACACCAAGCGCTCCAGGGGCTTTGG GTAATGAGAGATCCAAACACCAAGCGCTGCAGGGGCTTTGG < 41bp 1 0.553814927937841 1 0.445027828216553 experiment 0.892370144124317 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675599 chr12:54675607 nonsynonymous SNV 0.997 5 29 hm5C_associated_SNPs_16143 0 0 0 1 54675606 54675629 mRNA hsa-miR-19b HNRNPA1 miRanda miRanda
1841 chr11 65271270 65271270 1 + G T BLCA 65271255 + 65271235 65271275 41 TCAGGATTTGAGCGGAAGAACGAATGTAACTTTAAGGCAGG TCAGGATTTGAGCGGAAGAACGAATGTAACTTTAATGCAGG < 41bp 1 0.377843022357791 1 0.477019369602203 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271255 chr11:65271270 . . 0 36 hm5C_associated_SNPs_16146 0 0 1 1 65271270 65271291 lncRNA hsa-miR-3163 MALAT1 miRanda starBase2
1842 chr7 114302141 114302141 1 + A T BLCA 114302124 + 114302104 114302144 41 CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTAGCC CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTTGCC < 41bp 1 0.197647455532781 1 0.19581264257431 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114302124 chr7:114302141 nonsynonymous SNV 0.998 5 38 hm5C_associated_SNPs_16195 0 0 1 4 114302124 114302145 mRNA hsa-miR-31 FOXP2 miRanda miRanda
1843 chr7 114302141 114302141 1 + A T BLCA 114302124 + 114302104 114302144 41 CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTAGCC CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTTGCC < 41bp 1 0.197647455532781 1 0.19581264257431 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114302124 chr7:114302141 nonsynonymous SNV 0.998 5 38 hm5C_associated_SNPs_16195 0 0 1 4 114302134 114302157 mRNA hsa-miR-141 FOXP2 miRanda miRanda
1844 chr7 114302141 114302141 1 + A T BLCA 114302124 + 114302104 114302144 41 CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTAGCC CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTTGCC < 41bp 1 0.197647455532781 1 0.19581264257431 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114302124 chr7:114302141 nonsynonymous SNV 0.998 5 38 hm5C_associated_SNPs_16195 0 0 1 4 114302134 114302157 mRNA hsa-miR-200a FOXP2 miRanda miRanda
1845 chr7 114302141 114302141 1 + A T BLCA 114302124 + 114302104 114302144 41 CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTAGCC CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTTGCC < 41bp 1 0.197647455532781 1 0.19581264257431 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114302124 chr7:114302141 nonsynonymous SNV 0.998 5 38 hm5C_associated_SNPs_16195 0 0 1 4 114302139 114302162 mRNA hsa-miR-495 FOXP2 miRanda miRanda
1846 chr2 217311861 217311861 1 + C T BLCA 217311863 + 217311843 217311883 41 TTTCATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGT TTTCATGCCTTTGGACTTTGCTACTGTGATGCCAAACGGGT < 41bp 1 0.427670297414705 1 0.0939412713050842 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311863 chr2:217311861 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_16235 0 0 0 2 217311852 217311872 mRNA hsa-miR-27a SMARCAL1 miRanda miRanda
1847 chr2 217311861 217311861 1 + C T BLCA 217311863 + 217311843 217311883 41 TTTCATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGT TTTCATGCCTTTGGACTTTGCTACTGTGATGCCAAACGGGT < 41bp 1 0.427670297414705 1 0.0939412713050842 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311863 chr2:217311861 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_16235 0 0 0 2 217311852 217311872 mRNA hsa-miR-27b SMARCAL1 miRanda miRanda
1848 chr2 217311861 217311861 1 + C T BLCA 217311866 + 217311846 217311886 41 CATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGTATG CATGCCTTTGGACTTTGCTACTGTGATGCCAAACGGGTATG < 41bp 1 0.38740259944823 1 0.074720174074173 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311866 chr2:217311861 nonsynonymous SNV 1.000 5 16 hm5C_associated_SNPs_16236 0 0 0 2 217311852 217311872 mRNA hsa-miR-27a SMARCAL1 miRanda miRanda
1849 chr2 217311861 217311861 1 + C T BLCA 217311866 + 217311846 217311886 41 CATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGTATG CATGCCTTTGGACTTTGCTACTGTGATGCCAAACGGGTATG < 41bp 1 0.38740259944823 1 0.074720174074173 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311866 chr2:217311861 nonsynonymous SNV 1.000 5 16 hm5C_associated_SNPs_16236 0 0 0 2 217311852 217311872 mRNA hsa-miR-27b SMARCAL1 miRanda miRanda
1850 chr20 47895492 47895492 1 + G A BLCA 47895499 + 47895479 47895519 41 TGGTGTAAATGATGACTTCACTTTTTTCCCCATCAGATCGA TGGTGTAAATGATAACTTCACTTTTTTCCCCATCAGATCGA < 41bp 1 0.088741190941636 1 0.0862611532211304 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895499 chr20:47895492 . . 0 14 hm5C_associated_SNPs_16242 0 0 1 1 47895482 47895497 mRNA hsa-miR-224 SNORD12C miRanda miRanda
1851 chr20 47895492 47895492 1 + G A BLCA 47895509 + 47895489 47895529 41 GATGACTTCACTTTTTTCCCCATCAGATCGACAATGCTGAC GATAACTTCACTTTTTTCCCCATCAGATCGACAATGCTGAC < 41bp 1 0.290187065410299 1 0.0501384437084198 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895509 chr20:47895492 . . 0 4 hm5C_associated_SNPs_16243 0 0 1 1 47895482 47895497 mRNA hsa-miR-224 SNORD12C miRanda miRanda
1852 chr8 48874100 48874100 1 + C G BLCA 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATGCCAGGTCATGTCCCTCTCAGAGACGTAGAGGCGA < 41bp 1 0.153889895080416 1 0.0718506276607513 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874100 nonsynonymous SNV 0.012 1 17 hm5C_associated_SNPs_16299 0 0 1 1 48874083 48874103 mRNA hsa-miR-143 MCM4 miRanda miRanda
1853 chr10 73122286 73122286 1 + G C BLCA 73122270 + 73122250 73122290 41 CTAAGATTGTGCCCAGGGAGCTGGCTGAGGCCACGGGAGTG CTAAGATTGTGCCCAGGGAGCTGGCTGAGGCCACGGCAGTG < 41bp 1 0.679782911059221 1 0.493979007005692 experiment 0.640434177881558 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73122270 chr10:73122286 nonsynonymous SNV 0.189 2 37 hm5C_associated_SNPs_16309 0 0 1 1 73122274 73122295 mRNA hsa-miR-197 SLC29A3 miRanda miRanda
1854 chr11 66050541 66050541 1 + C G BLCA 66050523 + 66050503 66050543 41 CAGCTGGTGGTCCCAGAATACTCCATCCACGGCCTCTTCTG CAGCTGGTGGTCCCAGAATACTCCATCCACGGCCTCTTGTG < 41bp 1 0.736757933906634 1 0.915665864944458 experiment 0.526484132186732 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CNIH2 ENSG00000174871 CDS Human protein_coding chr11:66050523 chr11:66050541 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_16322 0 0 1 2 66050541 66050564 mRNA hsa-miR-342-3p CNIH2 miRanda miRanda
1855 chr11 66050541 66050541 1 + C G BLCA 66050523 + 66050503 66050543 41 CAGCTGGTGGTCCCAGAATACTCCATCCACGGCCTCTTCTG CAGCTGGTGGTCCCAGAATACTCCATCCACGGCCTCTTGTG < 41bp 1 0.736757933906634 1 0.915665864944458 experiment 0.526484132186732 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CNIH2 ENSG00000174871 CDS Human protein_coding chr11:66050523 chr11:66050541 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_16322 0 0 1 2 66050533 66050555 mRNA hsa-miR-494 CNIH2 miRanda miRanda
1856 chr2 55461976 55461976 1 + C G BLCA 55461971 + 55461951 55461991 41 ATTCTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGA ATTCTTCCATTAACAGGAGTCTACTGTTCATCTTGTGTTGA < 41bp 1 0.249156886017491 1 0.108326494693756 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461971 chr2:55461976 nonsynonymous SNV 0.997 2 26 hm5C_associated_SNPs_16354 0 0 1 2 55461967 55461976 mRNA hsa-miR-379 RPS27A miRanda miRanda
1857 chr2 55461976 55461976 1 + C G BLCA 55461971 + 55461951 55461991 41 ATTCTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGA ATTCTTCCATTAACAGGAGTCTACTGTTCATCTTGTGTTGA < 41bp 1 0.249156886017491 1 0.108326494693756 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461971 chr2:55461976 nonsynonymous SNV 0.997 2 26 hm5C_associated_SNPs_16354 0 0 1 2 55461967 55461976 mRNA hsa-miR-411 RPS27A miRanda miRanda
1858 chr2 55461976 55461976 1 + C G BLCA 55461974 + 55461954 55461994 41 CTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGAC CTTCCATTAACAGGAGTCTACTGTTCATCTTGTGTTGAGAC < 41bp 1 0.152484952873635 1 0.174960434436798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461974 chr2:55461976 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_16355 0 0 1 2 55461967 55461976 mRNA hsa-miR-379 RPS27A miRanda miRanda
1859 chr2 55461976 55461976 1 + C G BLCA 55461974 + 55461954 55461994 41 CTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGAC CTTCCATTAACAGGAGTCTACTGTTCATCTTGTGTTGAGAC < 41bp 1 0.152484952873635 1 0.174960434436798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461974 chr2:55461976 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_16355 0 0 1 2 55461967 55461976 mRNA hsa-miR-411 RPS27A miRanda miRanda
1860 chr2 55461976 55461976 1 + C G BLCA 55461979 + 55461959 55461999 41 ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGT ATTAACAGGAGTCTACTGTTCATCTTGTGTTGAGACTTCGT < 41bp 1 0.169259191766767 1 0.0319207012653351 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461979 chr2:55461976 nonsynonymous SNV 0.997 2 18 hm5C_associated_SNPs_16356 0 0 1 2 55461967 55461976 mRNA hsa-miR-379 RPS27A miRanda miRanda
1861 chr2 55461976 55461976 1 + C G BLCA 55461979 + 55461959 55461999 41 ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGT ATTAACAGGAGTCTACTGTTCATCTTGTGTTGAGACTTCGT < 41bp 1 0.169259191766767 1 0.0319207012653351 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461979 chr2:55461976 nonsynonymous SNV 0.997 2 18 hm5C_associated_SNPs_16356 0 0 1 2 55461967 55461976 mRNA hsa-miR-411 RPS27A miRanda miRanda
1862 chr6 149730837 149730837 1 + G C BLCA 149730822 + 149730802 149730842 41 AACCATCCAGCCTTAATTCGCTGTGAACAGTGTGAGATGCC AACCATCCAGCCTTAATTCGCTGTGAACAGTGTGACATGCC < 41bp 1 0.414313561872002 1 0.197544872760773 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TAB2 ENSG00000055208 CDS Human protein_coding chr6:149730822 chr6:149730837 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16439 0 0 1 1 149730818 149730838 mRNA hsa-miR-342-3p TAB2 miRanda miRanda
1863 chr5 73981280 73981280 1 + G A BLCA 73981268 + 73981248 73981288 41 GCGCTGTGGCCCCTGCCGCTCTTGGTGAAGATGACCCCGAA GCGCTGTGGCCCCTGCCGCTCTTGGTGAAGATAACCCCGAA < 41bp 1 0.778416406658617 1 0.766813158988953 experiment 0.443167186682766 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HEXB ENSG00000049860 CDS Human protein_coding chr5:73981268 chr5:73981280 nonsynonymous SNV 0.006 1 33 hm5C_associated_SNPs_16448 0 0 1 1 73981275 73981296 mRNA hsa-miR-214 HEXB miRanda miRanda
1864 chr7 158672547 158672547 1 + C T BLCA 158672551 + 158672531 158672571 41 AAAAGTAATTCATTCTCTGACAAAGGGGAAGAAAGACATAA AAAAGTAATTCATTCTTTGACAAAGGGGAAGAAAGACATAA < 41bp 1 0.292473586291827 1 0.443084418773651 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR60 ENSG00000126870 CDS Human protein_coding chr7:158672551 chr7:158672547 nonsynonymous SNV 0.012 0 17 hm5C_associated_SNPs_16476 0 0 1 1 158672527 158672548 mRNA hsa-miR-143 WDR60 miRanda miRanda
1865 chr3 20019815 20019815 1 + A C BLCA 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAGTCCTCTGCAGATGACAATAGTTTATTATTCATGGA < 41bp 1 0.486593836889217 1 0.0920608043670654 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019815 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_16518 0 0 1 2 20019811 20019830 mRNA hsa-miR-219-5p RAB5A miRanda miRanda
1866 chr3 20019815 20019815 1 + A C BLCA 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAGTCCTCTGCAGATGACAATAGTTTATTATTCATGGA < 41bp 1 0.486593836889217 1 0.0920608043670654 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019815 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_16518 0 0 1 2 20019802 20019820 mRNA hsa-miR-153 RAB5A miRanda miRanda
1867 chr1 76255006 76255006 1 + G C BLCA 76255012 + 76254992 76255032 41 CTAGTATCGGACATGATCCTCATCTTTTATACACTCTTAGT CTAGTATCGGACATCATCCTCATCTTTTATACACTCTTAGT < 41bp 1 0.247969349894415 1 0.0455408692359924 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255012 chr1:76255006 nonsynonymous SNV 0.991 4 15 hm5C_associated_SNPs_16620 0 0 1 2 76254987 76255010 mRNA hsa-miR-190 RABGGTB miRanda miRanda
1868 chr1 76255006 76255006 1 + G C BLCA 76255012 + 76254992 76255032 41 CTAGTATCGGACATGATCCTCATCTTTTATACACTCTTAGT CTAGTATCGGACATCATCCTCATCTTTTATACACTCTTAGT < 41bp 1 0.247969349894415 1 0.0455408692359924 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255012 chr1:76255006 nonsynonymous SNV 0.991 4 15 hm5C_associated_SNPs_16620 0 0 1 2 76254989 76255010 mRNA hsa-miR-190b RABGGTB miRanda miRanda
1869 chr17 35310557 35310557 1 + G A BLCA 35310538 + 35310518 35310558 41 GATGGTGTGGTGATGACCTTCTCTAGTGTCAAAGTTTCTGA GATGGTGTGGTGATGACCTTCTCTAGTGTCAAAGTTTCTAA < 41bp 1 0.75078850947954 1 0.902595162391663 experiment 0.498422981040921 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AATF ENSG00000108270 CDS Human other chr17:35310538 chr17:35310557 nonsynonymous SNV 0.977 1 40 hm5C_associated_SNPs_16623 0 0 1 1 35310544 35310563 mRNA hsa-miR-384 AATF miRanda miRanda
1870 chr1 242052811 242052811 1 + T G BLCA 242052812 + 242052792 242052832 41 AAGAAACCCCTGTCCCCAGTCAGAGATAACATCCAACTAAC AAGAAACCCCTGTCCCCAGGCAGAGATAACATCCAACTAAC < 41bp 1 0.593572513612806 1 0.810050308704376 experiment 0.812854972774389 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242052812 chr1:242052811 nonsynonymous SNV 0.996 3 20 hm5C_associated_SNPs_16680 0 0 1 1 242052790 242052811 mRNA hsa-miR-491-5p EXO1 miRanda miRanda
1871 chr7 148921496 148921496 1 + C G BLCA 148921485 + 148921465 148921505 41 AGACCTACAGCCGTAAGGAGCACCTGCAGAACCACCAGCGG AGACCTACAGCCGTAAGGAGCACCTGCAGAAGCACCAGCGG < 41bp 1 0.349924650014743 1 0.238924562931061 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921485 chr7:148921496 nonsynonymous SNV 1.000 0 32 hm5C_associated_SNPs_16732 0 0 1 2 148921484 148921504 mRNA hsa-miR-138 ZNF282 miRanda miRanda
1872 chr7 148921496 148921496 1 + C G BLCA 148921485 + 148921465 148921505 41 AGACCTACAGCCGTAAGGAGCACCTGCAGAACCACCAGCGG AGACCTACAGCCGTAAGGAGCACCTGCAGAAGCACCAGCGG < 41bp 1 0.349924650014743 1 0.238924562931061 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921485 chr7:148921496 nonsynonymous SNV 1.000 0 32 hm5C_associated_SNPs_16732 0 0 1 2 148921475 148921496 mRNA hsa-miR-544 ZNF282 miRanda miRanda
1873 chr7 148921496 148921496 1 + C G BLCA 148921487 + 148921467 148921507 41 ACCTACAGCCGTAAGGAGCACCTGCAGAACCACCAGCGGCT ACCTACAGCCGTAAGGAGCACCTGCAGAAGCACCAGCGGCT < 41bp 1 0.0631208813558634 1 0.183176696300507 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921487 chr7:148921496 nonsynonymous SNV 1.000 0 30 hm5C_associated_SNPs_16733 0 0 1 2 148921484 148921504 mRNA hsa-miR-138 ZNF282 miRanda miRanda
1874 chr7 148921496 148921496 1 + C G BLCA 148921487 + 148921467 148921507 41 ACCTACAGCCGTAAGGAGCACCTGCAGAACCACCAGCGGCT ACCTACAGCCGTAAGGAGCACCTGCAGAAGCACCAGCGGCT < 41bp 1 0.0631208813558634 1 0.183176696300507 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921487 chr7:148921496 nonsynonymous SNV 1.000 0 30 hm5C_associated_SNPs_16733 0 0 1 2 148921475 148921496 mRNA hsa-miR-544 ZNF282 miRanda miRanda
1875 chr7 148921496 148921496 1 + C G BLCA 148921488 + 148921468 148921508 41 CCTACAGCCGTAAGGAGCACCTGCAGAACCACCAGCGGCTG CCTACAGCCGTAAGGAGCACCTGCAGAAGCACCAGCGGCTG < 41bp 1 0.757781085945154 1 0.75944185256958 experiment 0.484437828109693 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921488 chr7:148921496 nonsynonymous SNV 1.000 0 29 hm5C_associated_SNPs_16734 0 0 1 2 148921484 148921504 mRNA hsa-miR-138 ZNF282 miRanda miRanda
1876 chr7 148921496 148921496 1 + C G BLCA 148921488 + 148921468 148921508 41 CCTACAGCCGTAAGGAGCACCTGCAGAACCACCAGCGGCTG CCTACAGCCGTAAGGAGCACCTGCAGAAGCACCAGCGGCTG < 41bp 1 0.757781085945154 1 0.75944185256958 experiment 0.484437828109693 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921488 chr7:148921496 nonsynonymous SNV 1.000 0 29 hm5C_associated_SNPs_16734 0 0 1 2 148921475 148921496 mRNA hsa-miR-544 ZNF282 miRanda miRanda
1877 chr11 6591874 6591874 1 + G C BLCA 6591872 + 6591852 6591892 41 AAGGGAGCTGGATGCAATGGCAGAGTGCAAGGCCCAGATGC AAGGGAGCTGGATGCAATGGCACAGTGCAAGGCCCAGATGC < 41bp 1 0.293211798513066 1 0.299270987510681 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNHD1 ENSG00000179532 CDS Human protein_coding chr11:6591872 chr11:6591874 nonsynonymous SNV 0.975 0 23 hm5C_associated_SNPs_16736 0 0 0 1 6591873 6591894 mRNA hsa-miR-33b DNHD1 miRanda miRanda
1878 chr1 26158516 26158516 1 + G A BLCA 26158523 + 26158503 26158543 41 AGAAAAGGAAATTGACAACCCTCAGCTCTGCAAACTCAGTC AGAAAAGGAAATTAACAACCCTCAGCTCTGCAAACTCAGTC < 41bp 1 0.490510980560373 1 0.125117927789688 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTFR1L ENSG00000117640 CDS Human protein_coding chr1:26158523 chr1:26158516 synonymous SNV . 0 14 hm5C_associated_SNPs_16792 0 0 1 1 26158504 26158525 mRNA hsa-miR-296-3p FAM54B miRanda miRanda
1879 chr6 161470185 161470185 1 + T C BLCA 161470199 + 161470179 161470219 41 CAGATATTATTAATGAAATCCTTACTTTCAAAGTCGACTAT CAGATACTATTAATGAAATCCTTACTTTCAAAGTCGACTAT < 41bp 1 0.0723970627460784 1 0.0492531657218933 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161470199 chr6:161470185 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_16800 0 0 1 1 161470179 161470200 mRNA hsa-miR-876-5p MAP3K4 miRanda miRanda
1880 chr10 115489207 115489207 1 + G C BLCA 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGCCAGGCACTTTCAGTCTCAGT < 41bp 1 0.280853064956167 1 0.1108618080616 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489207 nonsynonymous SNV 0.995 3 32 hm5C_associated_SNPs_16813 0 0 1 9 115489184 115489207 mRNA hsa-miR-17 CASP7 miRanda miRanda
1881 chr10 115489207 115489207 1 + G C BLCA 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGCCAGGCACTTTCAGTCTCAGT < 41bp 1 0.280853064956167 1 0.1108618080616 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489207 nonsynonymous SNV 0.995 3 32 hm5C_associated_SNPs_16813 0 0 1 9 115489185 115489207 mRNA hsa-miR-20a CASP7 miRanda miRanda
1882 chr10 115489207 115489207 1 + G C BLCA 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGCCAGGCACTTTCAGTCTCAGT < 41bp 1 0.280853064956167 1 0.1108618080616 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489207 nonsynonymous SNV 0.995 3 32 hm5C_associated_SNPs_16813 0 0 1 9 115489184 115489207 mRNA hsa-miR-93 CASP7 miRanda miRanda
1883 chr10 115489207 115489207 1 + G C BLCA 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGCCAGGCACTTTCAGTCTCAGT < 41bp 1 0.280853064956167 1 0.1108618080616 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489207 nonsynonymous SNV 0.995 3 32 hm5C_associated_SNPs_16813 0 0 1 9 115489184 115489207 mRNA hsa-miR-106a CASP7 miRanda miRanda
1884 chr10 115489207 115489207 1 + G C BLCA 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGCCAGGCACTTTCAGTCTCAGT < 41bp 1 0.280853064956167 1 0.1108618080616 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489207 nonsynonymous SNV 0.995 3 32 hm5C_associated_SNPs_16813 0 0 1 9 115489186 115489207 mRNA hsa-miR-106b CASP7 miRanda miRanda
1885 chr10 115489207 115489207 1 + G C BLCA 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGCCAGGCACTTTCAGTCTCAGT < 41bp 1 0.280853064956167 1 0.1108618080616 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489207 nonsynonymous SNV 0.995 3 32 hm5C_associated_SNPs_16813 0 0 1 9 115489195 115489216 mRNA hsa-miR-378 CASP7 miRanda miRanda
1886 chr10 115489207 115489207 1 + G C BLCA 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGCCAGGCACTTTCAGTCTCAGT < 41bp 1 0.280853064956167 1 0.1108618080616 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489207 nonsynonymous SNV 0.995 3 32 hm5C_associated_SNPs_16813 0 0 1 9 115489194 115489216 mRNA hsa-miR-422a CASP7 miRanda miRanda
1887 chr10 115489207 115489207 1 + G C BLCA 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGCCAGGCACTTTCAGTCTCAGT < 41bp 1 0.280853064956167 1 0.1108618080616 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489207 nonsynonymous SNV 0.995 3 32 hm5C_associated_SNPs_16813 0 0 1 9 115489184 115489207 mRNA hsa-miR-20b CASP7 miRanda miRanda
1888 chr10 115489207 115489207 1 + G C BLCA 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGCCAGGCACTTTCAGTCTCAGT < 41bp 1 0.280853064956167 1 0.1108618080616 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489207 nonsynonymous SNV 0.995 3 32 hm5C_associated_SNPs_16813 0 0 1 9 115489186 115489207 mRNA hsa-miR-519d CASP7 miRanda miRanda
1889 chr12 27908150 27908150 1 + G C BLCA 27908142 + 27908122 27908162 41 AGAATGGGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGT AGAATGGGAAAAAAGTAAGACTGAAGCACACATGGAAGAGT < 41bp 1 0.578468714311282 1 0.514430165290833 experiment 0.843062571377436 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27908142 chr12:27908150 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_16814 0 0 1 1 27908131 27908153 mRNA hsa-miR-346 MRPS35 miRanda miRanda
1890 chr12 27908150 27908150 1 + G C BLCA 27908148 + 27908128 27908168 41 GGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGTATATAT GGAAAAAAGTAAGACTGAAGCACACATGGAAGAGTATATAT < 41bp 1 0.45793985459062 1 0.454443901777267 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27908148 chr12:27908150 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_16815 0 0 1 1 27908131 27908153 mRNA hsa-miR-346 MRPS35 miRanda miRanda
1891 chr1 109643217 109643217 1 + G C BLCA 109643199 + 109643179 109643219 41 ATAGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAG ATAGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCCAG < 41bp 1 0.721551579859346 1 0.388178706169128 experiment 0.556896840281309 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643199 chr1:109643217 . . 0 39 hm5C_associated_SNPs_16827 0 0 1 2 109643203 109643232 mRNA hsa-miR-383 SCARNA2 miRanda miRanda
1892 chr1 109643217 109643217 1 + G C BLCA 109643199 + 109643179 109643219 41 ATAGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAG ATAGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCCAG < 41bp 1 0.721551579859346 1 0.388178706169128 experiment 0.556896840281309 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643199 chr1:109643217 . . 0 39 hm5C_associated_SNPs_16827 0 0 1 2 109643209 109643231 lncRNA hsa-miR-2115-3p AL356488.2 miRanda starBase2
1893 chr1 109643217 109643217 1 + G C BLCA 109643200 + 109643180 109643220 41 TAGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGG TAGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCCAGG < 41bp 1 0.553904505851117 1 0.552452385425568 experiment 0.892190988297765 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643200 chr1:109643217 . . 0 38 hm5C_associated_SNPs_16828 0 0 1 2 109643203 109643232 mRNA hsa-miR-383 SCARNA2 miRanda miRanda
1894 chr1 109643217 109643217 1 + G C BLCA 109643200 + 109643180 109643220 41 TAGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGG TAGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCCAGG < 41bp 1 0.553904505851117 1 0.552452385425568 experiment 0.892190988297765 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643200 chr1:109643217 . . 0 38 hm5C_associated_SNPs_16828 0 0 1 2 109643209 109643231 lncRNA hsa-miR-2115-3p AL356488.2 miRanda starBase2
1895 chr1 109643217 109643217 1 + G C BLCA 109643201 + 109643181 109643221 41 AGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGC AGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCCAGGC < 41bp 1 0.592801187111848 1 0.903638482093811 experiment 0.814397625776303 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643201 chr1:109643217 . . 0 37 hm5C_associated_SNPs_16829 0 0 1 2 109643203 109643232 mRNA hsa-miR-383 SCARNA2 miRanda miRanda
1896 chr1 109643217 109643217 1 + G C BLCA 109643201 + 109643181 109643221 41 AGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGC AGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCCAGGC < 41bp 1 0.592801187111848 1 0.903638482093811 experiment 0.814397625776303 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643201 chr1:109643217 . . 0 37 hm5C_associated_SNPs_16829 0 0 1 2 109643209 109643231 lncRNA hsa-miR-2115-3p AL356488.2 miRanda starBase2
1897 chr1 109643217 109643217 1 + G C BLCA 109643202 + 109643182 109643222 41 GACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCG GACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCCAGGCG < 41bp 1 0.462553878250647 1 0.736834049224854 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643202 chr1:109643217 . . 0 36 hm5C_associated_SNPs_16830 0 0 1 2 109643203 109643232 mRNA hsa-miR-383 SCARNA2 miRanda miRanda
1898 chr1 109643217 109643217 1 + G C BLCA 109643202 + 109643182 109643222 41 GACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCG GACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCCAGGCG < 41bp 1 0.462553878250647 1 0.736834049224854 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643202 chr1:109643217 . . 0 36 hm5C_associated_SNPs_16830 0 0 1 2 109643209 109643231 lncRNA hsa-miR-2115-3p AL356488.2 miRanda starBase2
1899 chr1 109643217 109643217 1 + G C BLCA 109643205 + 109643185 109643225 41 GAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCGATT GAGGCCGGGCTTGTCCCCGGCCACTGATTATCCAGGCGATT < 41bp 1 0.0774856077026185 1 0.0838050842285156 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643205 chr1:109643217 . . 0 33 hm5C_associated_SNPs_16831 0 0 1 2 109643203 109643232 mRNA hsa-miR-383 SCARNA2 miRanda miRanda
1900 chr1 109643217 109643217 1 + G C BLCA 109643205 + 109643185 109643225 41 GAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCGATT GAGGCCGGGCTTGTCCCCGGCCACTGATTATCCAGGCGATT < 41bp 1 0.0774856077026185 1 0.0838050842285156 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643205 chr1:109643217 . . 0 33 hm5C_associated_SNPs_16831 0 0 1 2 109643209 109643231 lncRNA hsa-miR-2115-3p AL356488.2 miRanda starBase2
1901 chr1 109643217 109643217 1 + G C BLCA 109643206 + 109643186 109643226 41 AGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCGATTC AGGCCGGGCTTGTCCCCGGCCACTGATTATCCAGGCGATTC < 41bp 1 0.354482229573776 1 0.0278176665306091 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643206 chr1:109643217 . . 0 32 hm5C_associated_SNPs_16832 0 0 1 2 109643203 109643232 mRNA hsa-miR-383 SCARNA2 miRanda miRanda
1902 chr1 109643217 109643217 1 + G C BLCA 109643206 + 109643186 109643226 41 AGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCGATTC AGGCCGGGCTTGTCCCCGGCCACTGATTATCCAGGCGATTC < 41bp 1 0.354482229573776 1 0.0278176665306091 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643206 chr1:109643217 . . 0 32 hm5C_associated_SNPs_16832 0 0 1 2 109643209 109643231 lncRNA hsa-miR-2115-3p AL356488.2 miRanda starBase2
1903 chr1 109643217 109643217 1 + G C BLCA 109643208 + 109643188 109643228 41 GCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCGATTCTG GCCGGGCTTGTCCCCGGCCACTGATTATCCAGGCGATTCTG < 41bp 1 0.526340458138631 1 0.0626833736896515 experiment 0.947319083722739 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643208 chr1:109643217 . . 0 30 hm5C_associated_SNPs_16833 0 0 1 2 109643203 109643232 mRNA hsa-miR-383 SCARNA2 miRanda miRanda
1904 chr1 109643217 109643217 1 + G C BLCA 109643208 + 109643188 109643228 41 GCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCGATTCTG GCCGGGCTTGTCCCCGGCCACTGATTATCCAGGCGATTCTG < 41bp 1 0.526340458138631 1 0.0626833736896515 experiment 0.947319083722739 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643208 chr1:109643217 . . 0 30 hm5C_associated_SNPs_16833 0 0 1 2 109643209 109643231 lncRNA hsa-miR-2115-3p AL356488.2 miRanda starBase2
1905 chr1 109643217 109643217 1 + G C BLCA 109643221 + 109643201 109643241 41 CCGGCCACTGATTATCGAGGCGATTCTGATCTGGGCACGGC CCGGCCACTGATTATCCAGGCGATTCTGATCTGGGCACGGC < 41bp 1 0.265351589666251 1 0.374196976423264 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643221 chr1:109643217 . . 0 17 hm5C_associated_SNPs_16834 0 0 1 2 109643203 109643232 mRNA hsa-miR-383 SCARNA2 miRanda miRanda
1906 chr1 109643217 109643217 1 + G C BLCA 109643221 + 109643201 109643241 41 CCGGCCACTGATTATCGAGGCGATTCTGATCTGGGCACGGC CCGGCCACTGATTATCCAGGCGATTCTGATCTGGGCACGGC < 41bp 1 0.265351589666251 1 0.374196976423264 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643221 chr1:109643217 . . 0 17 hm5C_associated_SNPs_16834 0 0 1 2 109643209 109643231 lncRNA hsa-miR-2115-3p AL356488.2 miRanda starBase2
1907 chr1 109643217 109643217 1 + G C BLCA 109643226 + 109643206 109643246 41 CACTGATTATCGAGGCGATTCTGATCTGGGCACGGCCACCG CACTGATTATCCAGGCGATTCTGATCTGGGCACGGCCACCG < 41bp 1 0.616393123303669 1 0.0527658462524414 experiment 0.767213753392662 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643226 chr1:109643217 . . 0 12 hm5C_associated_SNPs_16835 0 0 1 2 109643203 109643232 mRNA hsa-miR-383 SCARNA2 miRanda miRanda
1908 chr1 109643217 109643217 1 + G C BLCA 109643226 + 109643206 109643246 41 CACTGATTATCGAGGCGATTCTGATCTGGGCACGGCCACCG CACTGATTATCCAGGCGATTCTGATCTGGGCACGGCCACCG < 41bp 1 0.616393123303669 1 0.0527658462524414 experiment 0.767213753392662 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643226 chr1:109643217 . . 0 12 hm5C_associated_SNPs_16835 0 0 1 2 109643209 109643231 lncRNA hsa-miR-2115-3p AL356488.2 miRanda starBase2
1909 chr22 24226515 24226515 1 + G A BLCA 24226534 + 24226514 24226554 41 AGAGCTGTTTGACCAGATGGCCAGGCCTGCTGCCTGCATGG AAAGCTGTTTGACCAGATGGCCAGGCCTGCTGCCTGCATGG < 41bp 1 0.381549959870403 1 0.253114998340607 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24226534 chr22:24226515 nonsynonymous SNV 0.992 5 2 hm5C_associated_SNPs_16863 0 0 1 1 24226496 24226518 mRNA hsa-miR-330-5p SLC2A11 miRanda miRanda
1910 chr8 68007756 68007756 1 + G A BLCA 68007774 + 68007754 68007794 41 AAGAAGTGGGCATTTCCAACCTAAAACATCAAAGGTTTGCA AAAAAGTGGGCATTTCCAACCTAAAACATCAAAGGTTTGCA < 41bp 1 0.366241783808001 1 0.388838171958923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68007774 chr8:68007756 nonsynonymous SNV 0.859 1 3 hm5C_associated_SNPs_16864 0 0 1 1 68007746 68007768 mRNA hsa-miR-365 CSPP1 miRanda miRanda
1911 chr11 107917093 107917093 1 + G A BLCA 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTAAGCAAGCACAAGCAGTAAGTTCTACATGC < 41bp 1 0.312319609196946 1 0.266749799251556 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917093 synonymous SNV . 0 23 hm5C_associated_SNPs_16865 0 0 1 2 107917089 107917096 mRNA hsa-miR-24 CUL5 miRanda miRanda
1912 chr11 107917093 107917093 1 + G A BLCA 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTAAGCAAGCACAAGCAGTAAGTTCTACATGC < 41bp 1 0.312319609196946 1 0.266749799251556 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917093 synonymous SNV . 0 23 hm5C_associated_SNPs_16865 0 0 1 2 107917074 107917093 mRNA hsa-miR-218 CUL5 miRanda miRanda
1913 chr10 17277378 17277378 1 + G A BLCA 17277369 + 17277349 17277389 41 TTGCCACCTACAGGAAGCTGCTGGAAGGCGAGGAGAGCAGG TTGCCACCTACAGGAAGCTGCTGGAAGGCAAGGAGAGCAGG < 41bp 1 0.70650357475124 1 0.55744481086731 experiment 0.58699285049752 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277369 chr10:17277378 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_16955 0 0 1 1 17277376 17277388 mRNA hsa-miR-539 VIM miRanda miRanda
1914 chr10 17277378 17277378 1 + G A BLCA 17277386 + 17277366 17277406 41 CTGCTGGAAGGCGAGGAGAGCAGGTAGGGAACTCAGACTTG CTGCTGGAAGGCAAGGAGAGCAGGTAGGGAACTCAGACTTG < 41bp 1 0.586591764762412 1 0.556146442890167 experiment 0.826816470475177 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277386 chr10:17277378 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_16956 0 0 1 1 17277376 17277388 mRNA hsa-miR-539 VIM miRanda miRanda
1915 chr9 36204091 36204091 1 + G C BLCA 36204107 + 36204087 36204127 41 AGCAGAGTGGAAAGAAAAGGCAATAAAGGAGCTAGAAGAAT AGCACAGTGGAAAGAAAAGGCAATAAAGGAGCTAGAAGAAT < 41bp 1 0.368306188072634 1 0.202040106058121 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLTA ENSG00000122705 CDS Human protein_coding chr9:36204107 chr9:36204091 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_16966 0 0 1 1 36204090 36204112 mRNA hsa-miR-137 CLTA miRanda miRanda
1916 chr3 97661173 97661173 1 + G A BLCA 97661188 + 97661168 97661208 41 CACCTGGAGCTAAAGTAGCTCTATGGACTGAACATGGGCAA CACCTAGAGCTAAAGTAGCTCTATGGACTGAACATGGGCAA < 41bp 1 0.197640597027592 1 0.073092132806778 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRYBG3 ENSG00000080200 CDS Human protein_coding chr3:97661188 chr3:97661173 nonsynonymous SNV 0.995 3 6 hm5C_associated_SNPs_16983 0 0 0 1 97661150 97661175 mRNA hsa-miR-199a-5p CRYBG3 miRanda miRanda
1917 chr4 524279 524279 1 + G A BLCA 524262 + 524242 524282 41 GTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACGGGC GTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACAGGC < 41bp 1 0.295093091144555 1 0.192519515752792 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGG ENSG00000174227 CDS Human protein_coding chr4:524262 chr4:524279 synonymous SNV . 0 38 hm5C_associated_SNPs_17022 0 0 1 2 524266 524290 mRNA hsa-miR-9 PIGG miRanda miRanda
1918 chr4 524279 524279 1 + G A BLCA 524262 + 524242 524282 41 GTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACGGGC GTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACAGGC < 41bp 1 0.295093091144555 1 0.192519515752792 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGG ENSG00000174227 CDS Human protein_coding chr4:524262 chr4:524279 synonymous SNV . 0 38 hm5C_associated_SNPs_17022 0 0 1 2 524257 524279 mRNA hsa-miR-542-3p PIGG miRanda miRanda
1919 chr21 34635155 34635155 1 + G C BLCA 34635140 + 34635120 34635160 41 GGCCATTTCCTAACCTGCCACCGTTGGAAGCCATGGATATG GGCCATTTCCTAACCTGCCACCGTTGGAAGCCATGCATATG < 41bp 1 0.0365743431371736 1 0.0381505787372589 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IFNAR2 ENSG00000159110 CDS Human protein_coding chr21:34635140 chr21:34635155 nonsynonymous SNV 0.004 1 36 hm5C_associated_SNPs_17072 0 0 1 1 34635150 34635172 mRNA hsa-miR-875-5p IFNAR2 miRanda miRanda
1920 chr10 17277345 17277345 1 + G C BLCA 17277353 + 17277333 17277373 41 GCCCTTGACATTGAGATTGCCACCTACAGGAAGCTGCTGGA GCCCTTGACATTCAGATTGCCACCTACAGGAAGCTGCTGGA < 41bp 1 0.345082666246274 1 0.17715921998024 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277353 chr10:17277345 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_17098 0 0 1 1 17277331 17277351 mRNA hsa-miR-216a VIM miRanda miRanda
1921 chr10 17277345 17277345 1 + G C BLCA 17277356 + 17277336 17277376 41 CTTGACATTGAGATTGCCACCTACAGGAAGCTGCTGGAAGG CTTGACATTCAGATTGCCACCTACAGGAAGCTGCTGGAAGG < 41bp 1 0.760548568791696 1 0.683423578739166 experiment 0.478902862416609 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277356 chr10:17277345 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_17099 0 0 1 1 17277331 17277351 mRNA hsa-miR-216a VIM miRanda miRanda
1922 chr10 135197564 135197564 1 + C T BLCA 135197583 + 135197563 135197603 41 TCTTCCTGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC TTTTCCTGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC < 41bp 1 0.0574971961780728 1 0.0325770974159241 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PAOX ENSG00000148832 CDS Human protein_coding chr10:135197583 chr10:135197564 synonymous SNV . 0 2 hm5C_associated_SNPs_17104 0 0 0 1 135197561 135197580 mRNA hsa-miR-371-5p PAOX miRanda miRanda
1923 chrX 73043047 73043047 1 - C A BLCA 73043029 - 73043009 73043049 41 AGGAGACTGATAAAAGGGCTCAGGGTTTGTTCTTTAATTCA AGTAGACTGATAAAAGGGCTCAGGGTTTGTTCTTTAATTCA < 41bp 1 0.406323669809939 1 0.506540358066559 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043029 chrX:73043047 . . 0 3 hm5C_associated_SNPs_17121 0 0 1 3 73043029 73043050 lncRNA hsa-miR-129-1-3p XIST miRanda starBase2
1924 chrX 73043047 73043047 1 - C A BLCA 73043029 - 73043009 73043049 41 AGGAGACTGATAAAAGGGCTCAGGGTTTGTTCTTTAATTCA AGTAGACTGATAAAAGGGCTCAGGGTTTGTTCTTTAATTCA < 41bp 1 0.406323669809939 1 0.506540358066559 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043029 chrX:73043047 . . 0 3 hm5C_associated_SNPs_17121 0 0 1 3 73043029 73043050 lncRNA hsa-miR-129-2-3p XIST miRanda starBase2
1925 chrX 73043047 73043047 1 - C A BLCA 73043029 - 73043009 73043049 41 AGGAGACTGATAAAAGGGCTCAGGGTTTGTTCTTTAATTCA AGTAGACTGATAAAAGGGCTCAGGGTTTGTTCTTTAATTCA < 41bp 1 0.406323669809939 1 0.506540358066559 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043029 chrX:73043047 . . 0 3 hm5C_associated_SNPs_17121 0 0 1 3 73043036 73043057 lncRNA hsa-miR-374a-3p XIST miRanda starBase2
1926 chr11 65273616 65273616 1 + C T BLCA 65273607 + 65273587 65273627 41 AGATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTT AGATGCTGGTGGTTGGCACTCCTGGTTTCTAGGACGGGGTT < 41bp 1 0.392310509451112 1 0.54178649187088 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273607 chr11:65273616 . . 0 30 hm5C_associated_SNPs_17144 0 0 0 1 65273604 65273625 lncRNA hsa-miR-1247-5p MALAT1 miRanda starBase2
1927 chr11 65273616 65273616 1 + C T BLCA 65273608 + 65273588 65273628 41 GATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTTC GATGCTGGTGGTTGGCACTCCTGGTTTCTAGGACGGGGTTC < 41bp 1 0.610428035656625 1 0.549972951412201 experiment 0.779143928686749 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273608 chr11:65273616 . . 0 29 hm5C_associated_SNPs_17145 0 0 0 1 65273604 65273625 lncRNA hsa-miR-1247-5p MALAT1 miRanda starBase2
1928 chr11 65273615 65273615 1 + C T BLCA 65273607 + 65273587 65273627 41 AGATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTT AGATGCTGGTGGTTGGCACTCCTGGTTTTCAGGACGGGGTT < 41bp 1 0.424398071254856 1 0.444121569395065 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273607 chr11:65273615 . . 0 29 hm5C_associated_SNPs_17150 0 0 0 1 65273604 65273625 lncRNA hsa-miR-1247-5p MALAT1 miRanda starBase2
1929 chr11 65273615 65273615 1 + C T BLCA 65273608 + 65273588 65273628 41 GATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTTC GATGCTGGTGGTTGGCACTCCTGGTTTTCAGGACGGGGTTC < 41bp 1 0.589697864977107 1 0.48072612285614 experiment 0.820604270045785 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273608 chr11:65273615 . . 0 28 hm5C_associated_SNPs_17151 0 0 0 1 65273604 65273625 lncRNA hsa-miR-1247-5p MALAT1 miRanda starBase2
1930 chr11 65267925 65267925 1 + C A BLCA 65267931 + 65267911 65267951 41 AGCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGG AGCAGACAGGATTCAAGGAACCAGTGTTTGATGAAGCTAGG < 41bp 1 0.375815234955721 1 0.193825840950012 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267931 chr11:65267925 . . 0 15 hm5C_associated_SNPs_17175 0 0 1 2 65267916 65267939 lncRNA hsa-miR-141-3p MALAT1 miRanda starBase2
1931 chr11 65267925 65267925 1 + C A BLCA 65267931 + 65267911 65267951 41 AGCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGG AGCAGACAGGATTCAAGGAACCAGTGTTTGATGAAGCTAGG < 41bp 1 0.375815234955721 1 0.193825840950012 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267931 chr11:65267925 . . 0 15 hm5C_associated_SNPs_17175 0 0 1 2 65267915 65267939 lncRNA hsa-miR-200a-3p MALAT1 miRanda starBase2
1932 chr11 65267925 65267925 1 + C A BLCA 65267932 + 65267912 65267952 41 GCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGGA GCAGACAGGATTCAAGGAACCAGTGTTTGATGAAGCTAGGA < 41bp 1 0.665310183181645 1 0.215543538331985 experiment 0.66937963363671 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267932 chr11:65267925 . . 0 14 hm5C_associated_SNPs_17176 0 0 1 2 65267916 65267939 lncRNA hsa-miR-141-3p MALAT1 miRanda starBase2
1933 chr11 65267925 65267925 1 + C A BLCA 65267932 + 65267912 65267952 41 GCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGGA GCAGACAGGATTCAAGGAACCAGTGTTTGATGAAGCTAGGA < 41bp 1 0.665310183181645 1 0.215543538331985 experiment 0.66937963363671 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267932 chr11:65267925 . . 0 14 hm5C_associated_SNPs_17176 0 0 1 2 65267915 65267939 lncRNA hsa-miR-200a-3p MALAT1 miRanda starBase2
1934 chr22 35726432 35726432 1 + C T BLCA 35726424 + 35726404 35726444 41 ATGAGCAGCTGACAGAGGAGCTGCTCATCGTCAATGACAAT ATGAGCAGCTGACAGAGGAGCTGCTCATTGTCAATGACAAT < 41bp 1 0.129953596844531 1 0.0741252303123474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35726424 chr22:35726432 synonymous SNV . 0 29 hm5C_associated_SNPs_17179 0 0 1 1 35726426 35726446 mRNA hsa-miR-219-5p TOM1 miRanda miRanda
1935 chr2 37475346 37475346 1 + G A BLCA 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATAAATCCAAAGAAGATGGGAGAGAGA < 41bp 1 0.430713116369607 1 0.490877419710159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475346 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_17210 0 0 1 2 37475334 37475356 mRNA hsa-miR-9 C2orf56 miRanda miRanda
1936 chr2 37475346 37475346 1 + G A BLCA 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATAAATCCAAAGAAGATGGGAGAGAGA < 41bp 1 0.430713116369607 1 0.490877419710159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475346 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_17210 0 0 1 2 37475345 37475366 mRNA hsa-miR-150 C2orf56 miRanda miRanda
1937 chr2 37475346 37475346 1 + G A BLCA 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATAAATCCAAAGAAGATGGGAGAGAGAT < 41bp 1 0.407134950951458 1 0.322917401790619 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475346 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_17211 0 0 1 2 37475334 37475356 mRNA hsa-miR-9 C2orf56 miRanda miRanda
1938 chr2 37475346 37475346 1 + G A BLCA 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATAAATCCAAAGAAGATGGGAGAGAGAT < 41bp 1 0.407134950951458 1 0.322917401790619 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475346 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_17211 0 0 1 2 37475345 37475366 mRNA hsa-miR-150 C2orf56 miRanda miRanda
1939 chr2 37475355 37475355 1 + G T BLCA 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATCCAAATAAGATGGGAGAGAGA < 41bp 1 0.359299314634437 1 0.498546242713928 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475355 nonsynonymous SNV 0.999 0 26 hm5C_associated_SNPs_17212 0 0 1 3 37475334 37475356 mRNA hsa-miR-9 C2orf56 miRanda miRanda
1940 chr2 37475355 37475355 1 + G T BLCA 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATCCAAATAAGATGGGAGAGAGA < 41bp 1 0.359299314634437 1 0.498546242713928 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475355 nonsynonymous SNV 0.999 0 26 hm5C_associated_SNPs_17212 0 0 1 3 37475345 37475366 mRNA hsa-miR-150 C2orf56 miRanda miRanda
1941 chr2 37475355 37475355 1 + G T BLCA 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATCCAAATAAGATGGGAGAGAGA < 41bp 1 0.359299314634437 1 0.498546242713928 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475355 nonsynonymous SNV 0.999 0 26 hm5C_associated_SNPs_17212 0 0 1 3 37475352 37475373 mRNA hsa-miR-216b C2orf56 miRanda miRanda
1942 chr2 37475355 37475355 1 + G T BLCA 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATCCAAATAAGATGGGAGAGAGAT < 41bp 1 0.249097379857346 1 0.228430807590485 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475355 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_17213 0 0 1 3 37475334 37475356 mRNA hsa-miR-9 C2orf56 miRanda miRanda
1943 chr2 37475355 37475355 1 + G T BLCA 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATCCAAATAAGATGGGAGAGAGAT < 41bp 1 0.249097379857346 1 0.228430807590485 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475355 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_17213 0 0 1 3 37475345 37475366 mRNA hsa-miR-150 C2orf56 miRanda miRanda
1944 chr2 37475355 37475355 1 + G T BLCA 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATCCAAATAAGATGGGAGAGAGAT < 41bp 1 0.249097379857346 1 0.228430807590485 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475355 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_17213 0 0 1 3 37475352 37475373 mRNA hsa-miR-216b C2orf56 miRanda miRanda
1945 chr15 89659692 89659692 1 + A G BRCA 89659711 + 89659691 89659731 41 TACTTCCAGGACTCGGGGCTCTCACGCTTTCTGCTCAAGTC TGCTTCCAGGACTCGGGGCTCTCACGCTTTCTGCTCAAGTC < 41bp 1 0.33240739335777 1 0.116804271936417 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89659711 chr15:89659692 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_17217 0 0 1 1 89659685 89659707 mRNA hsa-miR-615-3p ABHD2 miRanda miRanda
1946 chr22 36054859 36054859 1 + C G BRCA 36054872 + 36054852 36054892 41 GCCACCTCTACTGCTGTCATCTCTGGAGTGATGAGCCTCCT GCCACCTGTACTGCTGTCATCTCTGGAGTGATGAGCCTCCT < 41bp 1 0.571646677472116 1 0.765496134757996 experiment 0.856706645055768 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APOL6 ENSG00000221963 CDS Human protein_coding chr22:36054872 chr22:36054859 nonsynonymous SNV 0.005 2 8 hm5C_associated_SNPs_17231 0 0 0 1 36054854 36054875 mRNA hsa-miR-143 APOL6 miRanda miRanda
1947 chr2 28521317 28521317 1 + C G BRCA 28521298 + 28521278 28521318 41 TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCCGTACA TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCCGTAGA < 41bp 1 0.214987816338656 1 0.193666994571686 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28521298 chr2:28521317 stopgain 0.994 1 40 hm5C_associated_SNPs_17249 0 0 1 1 28521311 28521335 mRNA hsa-miR-324-5p BRE miRanda miRanda
1948 chr2 202141586 202141586 1 + C T BRCA 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTTGGGGATACTGTCTGATCATCAACAATCA < 41bp 1 0.255699739046773 1 0.106071382761002 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141586 nonsynonymous SNV 0.931 5 13 hm5C_associated_SNPs_17266 0 0 1 1 202141583 202141604 mRNA hsa-miR-383 CASP8 miRanda miRanda
1949 chr7 92926136 92926136 1 + A G BRCA 92926143 + 92926123 92926163 41 ATCTTTGTTTTGGATATAATCAGCAGGTAGTATTTAAGATC ATCTTTGTTTTGGGTATAATCAGCAGGTAGTATTTAAGATC < 41bp 1 0.795806821944433 1 0.869550168514252 experiment 0.408386356111134 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92926143 chr7:92926136 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_17269 0 0 1 1 92926130 92926148 mRNA hsa-miR-370 CCDC132 miRanda miRanda
1950 chr1 112999478 112999478 1 + T A BRCA 112999460 + 112999440 112999480 41 TAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGGATCA TAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGGAACA < 41bp 1 0.376403526009923 1 0.0590434074401855 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999460 chr1:112999478 nonsynonymous SNV 0.998 2 39 hm5C_associated_SNPs_17314 0 0 0 1 112999470 112999491 mRNA hsa-miR-451 CTTNBP2NL miRanda miRanda
1951 chr1 112999478 112999478 1 + T A BRCA 112999467 + 112999447 112999487 41 CCTGGCTACCAGTCATCGTACCAAGTAGGGATCAACCAACG CCTGGCTACCAGTCATCGTACCAAGTAGGGAACAACCAACG < 41bp 1 0.265179003544863 1 0.51737368106842 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999467 chr1:112999478 nonsynonymous SNV 0.998 2 32 hm5C_associated_SNPs_17315 0 0 0 1 112999470 112999491 mRNA hsa-miR-451 CTTNBP2NL miRanda miRanda
1952 chr1 112999478 112999478 1 + T A BRCA 112999468 + 112999448 112999488 41 CTGGCTACCAGTCATCGTACCAAGTAGGGATCAACCAACGG CTGGCTACCAGTCATCGTACCAAGTAGGGAACAACCAACGG < 41bp 1 0.474637723695198 1 0.167675673961639 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999468 chr1:112999478 nonsynonymous SNV 0.998 2 31 hm5C_associated_SNPs_17316 0 0 0 1 112999470 112999491 mRNA hsa-miR-451 CTTNBP2NL miRanda miRanda
1953 chr19 49469846 49469846 1 + G A BRCA 49469831 + 49469811 49469851 41 GTTTCTAATTTCTCCCTCTTCTCTCTCAGCTCTGTGACTTC GTTTCTAATTTCTCCCTCTTCTCTCTCAGCTCTGTAACTTC < 41bp 1 0.266686386629624 1 0.206251710653305 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469831 chr19:49469846 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_17390 0 0 1 1 49469832 49469851 mRNA hsa-miR-224 FTL miRanda miRanda
1954 chr2 157407221 157407221 1 + A G BRCA 157407233 + 157407213 157407253 41 GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGGTTAT GCCAGCCAGGTGCTGGTGTCCATATTGTGATGCCTGGTTAT < 41bp 1 0.209906593310228 1 0.269917488098145 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407233 chr2:157407221 nonsynonymous SNV 0.507 2 9 hm5C_associated_SNPs_17400 0 0 1 1 157407213 157407236 mRNA hsa-miR-425 GPD2 miRanda miRanda
1955 chr1 10332316 10332316 1 + T C BRCA 10332306 + 10332286 10332326 41 GTATTTATTTTAGGAAGGAGCAAATATTAATAAGTCTCTTA GTATTTATTTTAGGAAGGAGCAAATATTAACAAGTCTCTTA < 41bp 1 0.0472626342761648 1 0.186384111642838 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10332306 chr1:10332316 synonymous SNV . 0 31 hm5C_associated_SNPs_17446 0 0 1 1 10332312 10332333 mRNA hsa-miR-382 KIF1B miRanda miRanda
1956 chr15 75190052 75190052 1 + G A BRCA 75190039 + 75190019 75190059 41 AGCTTACTGAGCCGAAGGACCTGCTGATATTCCGTGCCTGC AGCTTACTGAGCCGAAGGACCTGCTGATATTCCATGCCTGC < 41bp 1 0.577445493032693 1 0.183769911527634 experiment 0.845109013934614 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MPI ENSG00000178802 CDS Human protein_coding chr15:75190039 chr15:75190052 nonsynonymous SNV 0.996 5 34 hm5C_associated_SNPs_17494 1 0 1 3 75190040 75190061 mRNA hsa-miR-16 MPI miRanda miRanda
1957 chr15 75190052 75190052 1 + G A BRCA 75190039 + 75190019 75190059 41 AGCTTACTGAGCCGAAGGACCTGCTGATATTCCGTGCCTGC AGCTTACTGAGCCGAAGGACCTGCTGATATTCCATGCCTGC < 41bp 1 0.577445493032693 1 0.183769911527634 experiment 0.845109013934614 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MPI ENSG00000178802 CDS Human protein_coding chr15:75190039 chr15:75190052 nonsynonymous SNV 0.996 5 34 hm5C_associated_SNPs_17494 1 0 1 3 75190041 75190062 mRNA hsa-miR-214 MPI miRanda miRanda
1958 chr15 75190052 75190052 1 + G A BRCA 75190039 + 75190019 75190059 41 AGCTTACTGAGCCGAAGGACCTGCTGATATTCCGTGCCTGC AGCTTACTGAGCCGAAGGACCTGCTGATATTCCATGCCTGC < 41bp 1 0.577445493032693 1 0.183769911527634 experiment 0.845109013934614 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MPI ENSG00000178802 CDS Human protein_coding chr15:75190039 chr15:75190052 nonsynonymous SNV 0.996 5 34 hm5C_associated_SNPs_17494 1 0 1 3 75190041 75190061 mRNA hsa-miR-195 MPI miRanda miRanda
1959 chr17 48595031 48595031 1 + G C BRCA 48595045 + 48595025 48595065 41 TTAAGAGAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT TTAAGACAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT < 41bp 1 0.724456796495716 1 0.844249725341797 experiment 0.551086407008569 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48595045 chr17:48595031 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_17498 0 0 0 5 48595017 48595041 mRNA hsa-miR-130a MYCBPAP miRanda miRanda
1960 chr17 48595031 48595031 1 + G C BRCA 48595045 + 48595025 48595065 41 TTAAGAGAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT TTAAGACAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT < 41bp 1 0.724456796495716 1 0.844249725341797 experiment 0.551086407008569 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48595045 chr17:48595031 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_17498 0 0 0 5 48595021 48595041 mRNA hsa-miR-301a MYCBPAP miRanda miRanda
1961 chr17 48595031 48595031 1 + G C BRCA 48595045 + 48595025 48595065 41 TTAAGAGAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT TTAAGACAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT < 41bp 1 0.724456796495716 1 0.844249725341797 experiment 0.551086407008569 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48595045 chr17:48595031 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_17498 0 0 0 5 48595020 48595041 mRNA hsa-miR-130b MYCBPAP miRanda miRanda
1962 chr17 48595031 48595031 1 + G C BRCA 48595045 + 48595025 48595065 41 TTAAGAGAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT TTAAGACAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT < 41bp 1 0.724456796495716 1 0.844249725341797 experiment 0.551086407008569 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48595045 chr17:48595031 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_17498 0 0 0 5 48595020 48595041 mRNA hsa-miR-454 MYCBPAP miRanda miRanda
1963 chr17 48595031 48595031 1 + G C BRCA 48595045 + 48595025 48595065 41 TTAAGAGAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT TTAAGACAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT < 41bp 1 0.724456796495716 1 0.844249725341797 experiment 0.551086407008569 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48595045 chr17:48595031 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_17498 0 0 0 5 48595021 48595041 mRNA hsa-miR-301b MYCBPAP miRanda miRanda
1964 chrX 77378415 77378415 1 + T C BRCA 77378418 + 77378398 77378438 41 TGGTGGTGGAATGGCTTTTACCTTCCTTAAGGTGCTCAACA TGGTGGTGGAATGGCTTCTACCTTCCTTAAGGTGCTCAACA < 41bp 1 0.0241625438497796 1 0.171668648719788 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378418 chrX:77378415 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_17527 0 0 1 1 77378413 77378437 mRNA hsa-miR-1271 PGK1 miRanda miRanda
1965 chrX 48759265 48759265 1 + G A BRCA 48759267 + 48759247 48759287 41 TCCTGGCTCTCCCCACATGACCCCAACTCCGTGGTTACCAA TCCTGGCTCTCCCCACATAACCCCAACTCCGTGGTTACCAA < 41bp 1 0.746225410319309 1 0.195550888776779 experiment 0.507549179361382 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759267 chrX:48759265 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_17554 0 0 1 1 48759243 48759265 mRNA hsa-miR-299-3p PQBP1 miRanda miRanda
1966 chr15 41021711 41021711 1 + T G BRCA 41021710 + 41021690 41021730 41 TTGTTTCCTGTAGGTATGCACTGCTTATTGTAGACAGTGCC TTGTTTCCTGTAGGTATGCACGGCTTATTGTAGACAGTGCC < 41bp 1 0.300269402738334 1 0.271614789962769 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RAD51 ENSG00000051180 CDS Human protein_coding chr15:41021710 chr15:41021711 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_17577 0 0 1 4 41021703 41021713 mRNA hsa-miR-148a RAD51 miRanda miRanda
1967 chr15 41021711 41021711 1 + T G BRCA 41021710 + 41021690 41021730 41 TTGTTTCCTGTAGGTATGCACTGCTTATTGTAGACAGTGCC TTGTTTCCTGTAGGTATGCACGGCTTATTGTAGACAGTGCC < 41bp 1 0.300269402738334 1 0.271614789962769 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RAD51 ENSG00000051180 CDS Human protein_coding chr15:41021710 chr15:41021711 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_17577 0 0 1 4 41021703 41021713 mRNA hsa-miR-152 RAD51 miRanda miRanda
1968 chr15 41021711 41021711 1 + T G BRCA 41021710 + 41021690 41021730 41 TTGTTTCCTGTAGGTATGCACTGCTTATTGTAGACAGTGCC TTGTTTCCTGTAGGTATGCACGGCTTATTGTAGACAGTGCC < 41bp 1 0.300269402738334 1 0.271614789962769 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RAD51 ENSG00000051180 CDS Human protein_coding chr15:41021710 chr15:41021711 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_17577 0 0 1 4 41021703 41021713 mRNA hsa-miR-148b RAD51 miRanda miRanda
1969 chr15 41021711 41021711 1 + T G BRCA 41021710 + 41021690 41021730 41 TTGTTTCCTGTAGGTATGCACTGCTTATTGTAGACAGTGCC TTGTTTCCTGTAGGTATGCACGGCTTATTGTAGACAGTGCC < 41bp 1 0.300269402738334 1 0.271614789962769 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RAD51 ENSG00000051180 CDS Human protein_coding chr15:41021710 chr15:41021711 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_17577 0 0 1 4 41021703 41021712 mRNA hsa-miR-454 RAD51 miRanda miRanda
1970 chr1 28975130 28975130 1 + G T BRCA 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC CTTCTGTCGTTAGTGGCACACGTAGGGCAACTCGATTGCTC < 41bp 1 0.574684393109853 1 0.232621371746063 experiment 0.850631213780293 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975130 . . 0 11 hm5C_associated_SNPs_17583 0 0 1 2 28975112 28975132 mRNA hsa-miR-377 RNU11 miRanda miRanda
1971 chr1 28975130 28975130 1 + G T BRCA 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC CTTCTGTCGTTAGTGGCACACGTAGGGCAACTCGATTGCTC < 41bp 1 0.574684393109853 1 0.232621371746063 experiment 0.850631213780293 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975130 . . 0 11 hm5C_associated_SNPs_17583 0 0 1 2 28975112 28975133 mRNA hsa-miR-342-3p RNU11 miRanda miRanda
1972 chr1 28975208 28975208 1 + T C BRCA 28975227 + 28975207 28975247 41 GTATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC GCATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC < 41bp 1 0.654596998602342 1 0.358381509780884 experiment 0.690806002795316 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975227 chr1:28975208 . . 0 2 hm5C_associated_SNPs_17584 0 0 1 2 28975197 28975221 mRNA hsa-miR-22 RNU11 miRanda miRanda
1973 chr1 28975208 28975208 1 + T C BRCA 28975227 + 28975207 28975247 41 GTATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC GCATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC < 41bp 1 0.654596998602342 1 0.358381509780884 experiment 0.690806002795316 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975227 chr1:28975208 . . 0 2 hm5C_associated_SNPs_17584 0 0 1 2 28975197 28975221 lncRNA hsa-miR-22-3p AL360012.1 miRanda starBase2
1974 chr11 67202569 67202569 1 + G A BRCA 67202549 + 67202529 67202569 41 TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCA < 41bp 1 0.749871289151134 1 0.666049718856812 experiment 0.500257421697731 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202549 chr11:67202569 nonsynonymous SNV 0.422 0 41 hm5C_associated_SNPs_17597 0 0 1 1 67202568 67202589 mRNA hsa-miR-184 RPS6KB2 miRanda miRanda
1975 chr11 67202569 67202569 1 + G A BRCA 67202551 + 67202531 67202571 41 TACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCC TACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCACC < 41bp 1 0.305016937951352 1 0.335906267166138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202551 chr11:67202569 nonsynonymous SNV 0.422 0 39 hm5C_associated_SNPs_17598 0 0 1 1 67202568 67202589 mRNA hsa-miR-184 RPS6KB2 miRanda miRanda
1976 chr11 67202569 67202569 1 + G A BRCA 67202555 + 67202535 67202575 41 TCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCCCCTC TCCACTCCTGCCACCGCCGCCGCCCTCGACCACCACCCCTC < 41bp 1 0.599558039277473 1 0.157609492540359 experiment 0.800883921445054 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202555 chr11:67202569 nonsynonymous SNV 0.422 0 35 hm5C_associated_SNPs_17599 0 0 1 1 67202568 67202589 mRNA hsa-miR-184 RPS6KB2 miRanda miRanda
1977 chr11 67202530 67202530 1 + C G BRCA 67202549 + 67202529 67202569 41 TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG TGTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG < 41bp 1 0.741535637866872 1 0.588360667228699 experiment 0.516928724266256 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202549 chr11:67202530 nonsynonymous SNV 0.703 0 2 hm5C_associated_SNPs_17600 0 0 1 9 67202517 67202537 mRNA hsa-let-7a RPS6KB2 miRanda miRanda
1978 chr11 67202530 67202530 1 + C G BRCA 67202549 + 67202529 67202569 41 TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG TGTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG < 41bp 1 0.741535637866872 1 0.588360667228699 experiment 0.516928724266256 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202549 chr11:67202530 nonsynonymous SNV 0.703 0 2 hm5C_associated_SNPs_17600 0 0 1 9 67202514 67202537 mRNA hsa-let-7b RPS6KB2 miRanda miRanda
1979 chr11 67202530 67202530 1 + C G BRCA 67202549 + 67202529 67202569 41 TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG TGTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG < 41bp 1 0.741535637866872 1 0.588360667228699 experiment 0.516928724266256 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202549 chr11:67202530 nonsynonymous SNV 0.703 0 2 hm5C_associated_SNPs_17600 0 0 1 9 67202517 67202537 mRNA hsa-let-7c RPS6KB2 miRanda miRanda
1980 chr11 67202530 67202530 1 + C G BRCA 67202549 + 67202529 67202569 41 TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG TGTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG < 41bp 1 0.741535637866872 1 0.588360667228699 experiment 0.516928724266256 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202549 chr11:67202530 nonsynonymous SNV 0.703 0 2 hm5C_associated_SNPs_17600 0 0 1 9 67202517 67202537 mRNA hsa-let-7d RPS6KB2 miRanda miRanda
1981 chr11 67202530 67202530 1 + C G BRCA 67202549 + 67202529 67202569 41 TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG TGTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG < 41bp 1 0.741535637866872 1 0.588360667228699 experiment 0.516928724266256 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202549 chr11:67202530 nonsynonymous SNV 0.703 0 2 hm5C_associated_SNPs_17600 0 0 1 9 67202517 67202537 mRNA hsa-let-7e RPS6KB2 miRanda miRanda
1982 chr11 67202530 67202530 1 + C G BRCA 67202549 + 67202529 67202569 41 TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG TGTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG < 41bp 1 0.741535637866872 1 0.588360667228699 experiment 0.516928724266256 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202549 chr11:67202530 nonsynonymous SNV 0.703 0 2 hm5C_associated_SNPs_17600 0 0 1 9 67202517 67202537 mRNA hsa-let-7f RPS6KB2 miRanda miRanda
1983 chr11 67202530 67202530 1 + C G BRCA 67202549 + 67202529 67202569 41 TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG TGTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG < 41bp 1 0.741535637866872 1 0.588360667228699 experiment 0.516928724266256 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202549 chr11:67202530 nonsynonymous SNV 0.703 0 2 hm5C_associated_SNPs_17600 0 0 1 9 67202517 67202537 mRNA hsa-miR-98 RPS6KB2 miRanda miRanda
1984 chr11 67202530 67202530 1 + C G BRCA 67202549 + 67202529 67202569 41 TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG TGTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG < 41bp 1 0.741535637866872 1 0.588360667228699 experiment 0.516928724266256 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202549 chr11:67202530 nonsynonymous SNV 0.703 0 2 hm5C_associated_SNPs_17600 0 0 1 9 67202517 67202537 mRNA hsa-let-7g RPS6KB2 miRanda miRanda
1985 chr11 67202530 67202530 1 + C G BRCA 67202549 + 67202529 67202569 41 TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG TGTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG < 41bp 1 0.741535637866872 1 0.588360667228699 experiment 0.516928724266256 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202549 chr11:67202530 nonsynonymous SNV 0.703 0 2 hm5C_associated_SNPs_17600 0 0 1 9 67202510 67202531 mRNA hsa-let-7i RPS6KB2 miRanda miRanda
1986 chr12 6619500 6619500 1 + C T BRCA 6619484 + 6619464 6619504 41 TGTAATCTTGGTGGGCGATACAGAGTTATGTGTGTTCACTG TGTAATCTTGGTGGGCGATACAGAGTTATGTGTGTTTACTG < 41bp 1 0.512022977219756 1 0.584633469581604 experiment 0.975954045560489 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619484 chr12:6619500 . . 0 37 hm5C_associated_SNPs_17604 0 0 1 1 6619494 6619516 mRNA hsa-miR-346 SCARNA10 miRanda miRanda
1987 chr12 6619500 6619500 1 + C T BRCA 6619502 + 6619482 6619522 41 TACAGAGTTATGTGTGTTCACTGTAAGGGCAGACCAACAAG TACAGAGTTATGTGTGTTTACTGTAAGGGCAGACCAACAAG < 41bp 1 0.514511427952229 1 0.287623196840286 experiment 0.970977144095542 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619502 chr12:6619500 . . 0 19 hm5C_associated_SNPs_17605 0 0 1 1 6619494 6619516 mRNA hsa-miR-346 SCARNA10 miRanda miRanda
1988 chr12 6619500 6619500 1 + C T BRCA 6619511 + 6619491 6619531 41 ATGTGTGTTCACTGTAAGGGCAGACCAACAAGAACTTTTTC ATGTGTGTTTACTGTAAGGGCAGACCAACAAGAACTTTTTC < 41bp 1 0.105642855791083 1 0.357156366109848 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619511 chr12:6619500 . . 0 10 hm5C_associated_SNPs_17606 0 0 1 1 6619494 6619516 mRNA hsa-miR-346 SCARNA10 miRanda miRanda
1989 chr12 6619500 6619500 1 + C T BRCA 6619515 + 6619495 6619535 41 GTGTTCACTGTAAGGGCAGACCAACAAGAACTTTTTCCTAC GTGTTTACTGTAAGGGCAGACCAACAAGAACTTTTTCCTAC < 41bp 1 0.052281218509063 1 0.204521417617798 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619515 chr12:6619500 . . 0 6 hm5C_associated_SNPs_17607 0 0 1 1 6619494 6619516 mRNA hsa-miR-346 SCARNA10 miRanda miRanda
1990 chr12 6619500 6619500 1 + C T BRCA 6619516 + 6619496 6619536 41 TGTTCACTGTAAGGGCAGACCAACAAGAACTTTTTCCTACT TGTTTACTGTAAGGGCAGACCAACAAGAACTTTTTCCTACT < 41bp 1 0.476032966291178 1 0.571803748607635 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619516 chr12:6619500 . . 0 5 hm5C_associated_SNPs_17608 0 0 1 1 6619494 6619516 mRNA hsa-miR-346 SCARNA10 miRanda miRanda
1991 chr12 6619500 6619500 1 + C T BRCA 6619519 + 6619499 6619539 41 TCACTGTAAGGGCAGACCAACAAGAACTTTTTCCTACTTTT TTACTGTAAGGGCAGACCAACAAGAACTTTTTCCTACTTTT < 41bp 1 0.425181851886804 1 0.296250522136688 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619519 chr12:6619500 . . 0 2 hm5C_associated_SNPs_17609 0 0 1 1 6619494 6619516 mRNA hsa-miR-346 SCARNA10 miRanda miRanda
1992 chr17 27047625 27047625 1 + A G BRCA 27047615 + 27047595 27047635 41 CCTGACACTTGTGATGTCTTCAAAGGAACCACTGATGCACC CCTGACACTTGTGATGTCTTCAAAGGAACCGCTGATGCACC < 41bp 1 0.609927011866498 1 0.876006364822388 experiment 0.780145976267005 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD42B ENSG00000238423 ncRNA_exonic Human snoRNA chr17:27047615 chr17:27047625 . . 0 31 hm5C_associated_SNPs_17653 0 0 1 1 27047607 27047628 mRNA hsa-miR-140-5p SNORD42B miRanda miRanda
1993 chr17 27047625 27047625 1 + A G BRCA 27047623 + 27047603 27047643 41 TTGTGATGTCTTCAAAGGAACCACTGATGCACCTGTGGCCA TTGTGATGTCTTCAAAGGAACCGCTGATGCACCTGTGGCCA < 41bp 1 0.286897865927137 1 0.08964803814888 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD42B ENSG00000238423 ncRNA_exonic Human snoRNA chr17:27047623 chr17:27047625 . . 0 23 hm5C_associated_SNPs_17654 0 0 1 1 27047607 27047628 mRNA hsa-miR-140-5p SNORD42B miRanda miRanda
1994 chr17 27047625 27047625 1 + A G BRCA 27047632 + 27047612 27047652 41 CTTCAAAGGAACCACTGATGCACCTGTGGCCAGGGTGGCCC CTTCAAAGGAACCGCTGATGCACCTGTGGCCAGGGTGGCCC < 41bp 1 0.783814979279968 1 0.0290888547897339 experiment 0.432370041440064 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD42B ENSG00000238423 ncRNA_exonic Human snoRNA chr17:27047632 chr17:27047625 . . 0 14 hm5C_associated_SNPs_17655 0 0 1 1 27047607 27047628 mRNA hsa-miR-140-5p SNORD42B miRanda miRanda
1995 chr17 27047625 27047625 1 + A G BRCA 27047634 + 27047614 27047654 41 TCAAAGGAACCACTGATGCACCTGTGGCCAGGGTGGCCCAC TCAAAGGAACCGCTGATGCACCTGTGGCCAGGGTGGCCCAC < 41bp 1 0.317479069287887 1 0.0275797843933105 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD42B ENSG00000238423 ncRNA_exonic Human snoRNA chr17:27047634 chr17:27047625 . . 0 12 hm5C_associated_SNPs_17656 0 0 1 1 27047607 27047628 mRNA hsa-miR-140-5p SNORD42B miRanda miRanda
1996 chrX 73045755 73045755 1 - C A BRCA 73045745 - 73045725 73045765 41 GAGAACCTGGGACTGTTGAGCATGTTTAATACTTTCCTTGA GAGAACCTGGTACTGTTGAGCATGTTTAATACTTTCCTTGA < 41bp 1 0.127985201859397 1 0.546557247638702 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045745 chrX:73045755 . . 0 11 hm5C_associated_SNPs_17720 0 0 1 3 73045748 73045768 lncRNA hsa-miR-132-3p XIST miRanda starBase2
1997 chrX 73045755 73045755 1 - C A BRCA 73045745 - 73045725 73045765 41 GAGAACCTGGGACTGTTGAGCATGTTTAATACTTTCCTTGA GAGAACCTGGTACTGTTGAGCATGTTTAATACTTTCCTTGA < 41bp 1 0.127985201859397 1 0.546557247638702 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045745 chrX:73045755 . . 0 11 hm5C_associated_SNPs_17720 0 0 1 3 73045748 73045767 lncRNA hsa-miR-212-3p XIST miRanda starBase2
1998 chrX 73045755 73045755 1 - C A BRCA 73045745 - 73045725 73045765 41 GAGAACCTGGGACTGTTGAGCATGTTTAATACTTTCCTTGA GAGAACCTGGTACTGTTGAGCATGTTTAATACTTTCCTTGA < 41bp 1 0.127985201859397 1 0.546557247638702 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045745 chrX:73045755 . . 0 11 hm5C_associated_SNPs_17720 0 0 1 3 73045746 73045768 lncRNA hsa-miR-421 XIST miRanda starBase2
1999 chrX 73045755 73045755 1 - C A BRCA 73045753 - 73045733 73045773 41 AAAGATGAGAGAACCTGGGACTGTTGAGCATGTTTAATACT AAAGATGAGAGAACCTGGTACTGTTGAGCATGTTTAATACT < 41bp 1 0.0463246124984845 1 0.0784916579723358 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045753 chrX:73045755 . . 0 19 hm5C_associated_SNPs_17721 0 0 1 3 73045748 73045768 lncRNA hsa-miR-132-3p XIST miRanda starBase2
2000 chrX 73045755 73045755 1 - C A BRCA 73045753 - 73045733 73045773 41 AAAGATGAGAGAACCTGGGACTGTTGAGCATGTTTAATACT AAAGATGAGAGAACCTGGTACTGTTGAGCATGTTTAATACT < 41bp 1 0.0463246124984845 1 0.0784916579723358 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045753 chrX:73045755 . . 0 19 hm5C_associated_SNPs_17721 0 0 1 3 73045748 73045767 lncRNA hsa-miR-212-3p XIST miRanda starBase2
2001 chrX 73045755 73045755 1 - C A BRCA 73045753 - 73045733 73045773 41 AAAGATGAGAGAACCTGGGACTGTTGAGCATGTTTAATACT AAAGATGAGAGAACCTGGTACTGTTGAGCATGTTTAATACT < 41bp 1 0.0463246124984845 1 0.0784916579723358 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045753 chrX:73045755 . . 0 19 hm5C_associated_SNPs_17721 0 0 1 3 73045746 73045768 lncRNA hsa-miR-421 XIST miRanda starBase2
2002 chrX 73045755 73045755 1 - C A BRCA 73045760 - 73045740 73045780 41 TAGGCTTAAAGATGAGAGAACCTGGGACTGTTGAGCATGTT TAGGCTTAAAGATGAGAGAACCTGGTACTGTTGAGCATGTT < 41bp 1 0.0454184265074613 1 0.115916579961777 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045760 chrX:73045755 . . 0 26 hm5C_associated_SNPs_17722 0 0 1 3 73045748 73045768 lncRNA hsa-miR-132-3p XIST miRanda starBase2
2003 chrX 73045755 73045755 1 - C A BRCA 73045760 - 73045740 73045780 41 TAGGCTTAAAGATGAGAGAACCTGGGACTGTTGAGCATGTT TAGGCTTAAAGATGAGAGAACCTGGTACTGTTGAGCATGTT < 41bp 1 0.0454184265074613 1 0.115916579961777 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045760 chrX:73045755 . . 0 26 hm5C_associated_SNPs_17722 0 0 1 3 73045748 73045767 lncRNA hsa-miR-212-3p XIST miRanda starBase2
2004 chrX 73045755 73045755 1 - C A BRCA 73045760 - 73045740 73045780 41 TAGGCTTAAAGATGAGAGAACCTGGGACTGTTGAGCATGTT TAGGCTTAAAGATGAGAGAACCTGGTACTGTTGAGCATGTT < 41bp 1 0.0454184265074613 1 0.115916579961777 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045760 chrX:73045755 . . 0 26 hm5C_associated_SNPs_17722 0 0 1 3 73045746 73045768 lncRNA hsa-miR-421 XIST miRanda starBase2
2005 chr7 22896271 22896271 1 + C T CESC 22896268 + 22896248 22896288 41 CTCTAATCTGATTTTATGTGCTTCTGCTGTGATGGATTAAA CTCTAATCTGATTTTATGTGCTTTTGCTGTGATGGATTAAA < 41bp 1 0.0463930089078972 1 0.043730765581131 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD93 ENSG00000221740 ncRNA_exonic Human snoRNA chr7:22896268 chr7:22896271 . . 0 24 hm5C_associated_SNPs_17771 0 0 1 1 22896258 22896280 mRNA hsa-miR-377 SNORD93 miRanda miRanda
2006 chrX 73043746 73043746 1 - G A CESC 73043732 - 73043712 73043752 41 GGGGCTCGGAACTACATGCCCTAGGATATAAAAATGATGTT GGGGCTTGGAACTACATGCCCTAGGATATAAAAATGATGTT < 41bp 1 0.306833866195599 1 0.512212812900543 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043732 chrX:73043746 . . 0 7 hm5C_associated_SNPs_17772 0 0 1 2 73043730 73043750 lncRNA hsa-miR-4761-3p XIST miRanda starBase2
2007 chrX 73043746 73043746 1 - G A CESC 73043732 - 73043712 73043752 41 GGGGCTCGGAACTACATGCCCTAGGATATAAAAATGATGTT GGGGCTTGGAACTACATGCCCTAGGATATAAAAATGATGTT < 41bp 1 0.306833866195599 1 0.512212812900543 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043732 chrX:73043746 . . 0 7 hm5C_associated_SNPs_17772 0 0 1 2 73043743 73043764 lncRNA hsa-miR-615-3p XIST miRanda starBase2
2008 chrX 73043746 73043746 1 - G A CESC 73043738 - 73043718 73043758 41 TTCTGTGGGGCTCGGAACTACATGCCCTAGGATATAAAAAT TTCTGTGGGGCTTGGAACTACATGCCCTAGGATATAAAAAT < 41bp 1 0.0512866145080465 1 0.177982836961746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043738 chrX:73043746 . . 0 13 hm5C_associated_SNPs_17773 0 0 1 2 73043730 73043750 lncRNA hsa-miR-4761-3p XIST miRanda starBase2
2009 chrX 73043746 73043746 1 - G A CESC 73043738 - 73043718 73043758 41 TTCTGTGGGGCTCGGAACTACATGCCCTAGGATATAAAAAT TTCTGTGGGGCTTGGAACTACATGCCCTAGGATATAAAAAT < 41bp 1 0.0512866145080465 1 0.177982836961746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043738 chrX:73043746 . . 0 13 hm5C_associated_SNPs_17773 0 0 1 2 73043743 73043764 lncRNA hsa-miR-615-3p XIST miRanda starBase2
2010 chrX 73043746 73043746 1 - G A CESC 73043748 - 73043728 73043768 41 GGTGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGG GGTGATTACTTTCTGTGGGGCTTGGAACTACATGCCCTAGG < 41bp 1 0.120193952952019 1 0.138409346342087 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043748 chrX:73043746 . . 0 23 hm5C_associated_SNPs_17774 0 0 1 2 73043730 73043750 lncRNA hsa-miR-4761-3p XIST miRanda starBase2
2011 chrX 73043746 73043746 1 - G A CESC 73043748 - 73043728 73043768 41 GGTGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGG GGTGATTACTTTCTGTGGGGCTTGGAACTACATGCCCTAGG < 41bp 1 0.120193952952019 1 0.138409346342087 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043748 chrX:73043746 . . 0 23 hm5C_associated_SNPs_17774 0 0 1 2 73043743 73043764 lncRNA hsa-miR-615-3p XIST miRanda starBase2
2012 chr15 63866331 63866331 1 + G A CESC 63866342 + 63866322 63866362 41 CAGAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT CAGAATCTAAAAAGTTTGATCCATTCCTAGGTAAGATATAT < 41bp 1 0.0137638385852621 1 0.0702128410339355 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP3 ENSG00000140455 CDS Human protein_coding chr15:63866342 chr15:63866331 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_17784 0 0 1 4 63866328 63866349 mRNA hsa-miR-1 USP3 miRanda miRanda
2013 chr15 63866331 63866331 1 + G A CESC 63866342 + 63866322 63866362 41 CAGAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT CAGAATCTAAAAAGTTTGATCCATTCCTAGGTAAGATATAT < 41bp 1 0.0137638385852621 1 0.0702128410339355 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP3 ENSG00000140455 CDS Human protein_coding chr15:63866342 chr15:63866331 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_17784 0 0 1 4 63866328 63866349 mRNA hsa-miR-206 USP3 miRanda miRanda
2014 chr15 63866331 63866331 1 + G A CESC 63866342 + 63866322 63866362 41 CAGAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT CAGAATCTAAAAAGTTTGATCCATTCCTAGGTAAGATATAT < 41bp 1 0.0137638385852621 1 0.0702128410339355 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP3 ENSG00000140455 CDS Human protein_coding chr15:63866342 chr15:63866331 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_17784 0 0 1 4 63866323 63866342 mRNA hsa-miR-371-5p USP3 miRanda miRanda
2015 chr15 63866331 63866331 1 + G A CESC 63866342 + 63866322 63866362 41 CAGAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT CAGAATCTAAAAAGTTTGATCCATTCCTAGGTAAGATATAT < 41bp 1 0.0137638385852621 1 0.0702128410339355 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP3 ENSG00000140455 CDS Human protein_coding chr15:63866342 chr15:63866331 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_17784 0 0 1 4 63866330 63866349 mRNA hsa-miR-613 USP3 miRanda miRanda
2016 chr9 72659589 72659589 1 + C T CESC 72659575 + 72659555 72659595 41 GAGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTCTGCCGT GAGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTTTGCCGT < 41bp 1 0.59190137325615 1 0.258632600307465 experiment 0.8161972534877 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659575 chr9:72659589 synonymous SNV . 0 35 hm5C_associated_SNPs_17785 0 0 0 1 72659573 72659594 mRNA hsa-miR-31 MAMDC2 miRanda miRanda
2017 chr9 72659589 72659589 1 + C T CESC 72659576 + 72659556 72659596 41 AGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTCTGCCGTG AGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTTTGCCGTG < 41bp 1 0.473975280080178 1 0.499132186174393 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659576 chr9:72659589 synonymous SNV . 0 34 hm5C_associated_SNPs_17786 0 0 0 1 72659573 72659594 mRNA hsa-miR-31 MAMDC2 miRanda miRanda
2018 chr9 72659589 72659589 1 + C T CESC 72659584 + 72659564 72659604 41 CGGCTTTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAA CGGCTTTGACTCCGTGTTGGCCTCTTTGCCGTGGATTTTAA < 41bp 1 0.110592063027651 1 0.0463207364082336 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659584 chr9:72659589 synonymous SNV . 0 26 hm5C_associated_SNPs_17787 0 0 0 1 72659573 72659594 mRNA hsa-miR-31 MAMDC2 miRanda miRanda
2019 chr9 72659589 72659589 1 + C T CESC 72659585 + 72659565 72659605 41 GGCTTTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAAA GGCTTTGACTCCGTGTTGGCCTCTTTGCCGTGGATTTTAAA < 41bp 1 0.198593183158869 1 0.0890517830848694 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659585 chr9:72659589 synonymous SNV . 0 25 hm5C_associated_SNPs_17788 0 0 0 1 72659573 72659594 mRNA hsa-miR-31 MAMDC2 miRanda miRanda
2020 chr9 72659589 72659589 1 + C T CESC 72659587 + 72659567 72659607 41 CTTTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAAATG CTTTGACTCCGTGTTGGCCTCTTTGCCGTGGATTTTAAATG < 41bp 1 0.189662388555003 1 0.209403842687607 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659587 chr9:72659589 synonymous SNV . 0 23 hm5C_associated_SNPs_17789 0 0 0 1 72659573 72659594 mRNA hsa-miR-31 MAMDC2 miRanda miRanda
2021 chr3 119205772 119205772 1 + C T CESC 119205764 + 119205744 119205784 41 GAATACACCAAAAACCAGGCCTGGAAATCTATGAAAGTAAT GAATACACCAAAAACCAGGCCTGGAAATTTATGAAAGTAAT < 41bp 1 0.616016686871919 1 0.155491352081299 experiment 0.767966626256162 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119205764 chr3:119205772 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_17791 0 0 1 4 119205762 119205778 mRNA hsa-miR-376c KTELC1 miRanda miRanda
2022 chr3 119205772 119205772 1 + C T CESC 119205764 + 119205744 119205784 41 GAATACACCAAAAACCAGGCCTGGAAATCTATGAAAGTAAT GAATACACCAAAAACCAGGCCTGGAAATTTATGAAAGTAAT < 41bp 1 0.616016686871919 1 0.155491352081299 experiment 0.767966626256162 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119205764 chr3:119205772 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_17791 0 0 1 4 119205758 119205778 mRNA hsa-miR-376a KTELC1 miRanda miRanda
2023 chr3 119205772 119205772 1 + C T CESC 119205764 + 119205744 119205784 41 GAATACACCAAAAACCAGGCCTGGAAATCTATGAAAGTAAT GAATACACCAAAAACCAGGCCTGGAAATTTATGAAAGTAAT < 41bp 1 0.616016686871919 1 0.155491352081299 experiment 0.767966626256162 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119205764 chr3:119205772 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_17791 0 0 1 4 119205757 119205778 mRNA hsa-miR-376b KTELC1 miRanda miRanda
2024 chr3 119205772 119205772 1 + C T CESC 119205764 + 119205744 119205784 41 GAATACACCAAAAACCAGGCCTGGAAATCTATGAAAGTAAT GAATACACCAAAAACCAGGCCTGGAAATTTATGAAAGTAAT < 41bp 1 0.616016686871919 1 0.155491352081299 experiment 0.767966626256162 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119205764 chr3:119205772 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_17791 0 0 1 4 119205753 119205774 mRNA hsa-miR-876-5p KTELC1 miRanda miRanda
2025 chr1 156202177 156202177 1 + C G CESC 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATGACACAGCAAATGTATGACAAGTTTATA < 41bp 1 0.150617627492317 1 0.378735959529877 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202177 nonsynonymous SNV 0.990 3 26 hm5C_associated_SNPs_17852 0 0 0 3 156202163 156202183 mRNA hsa-miR-376c PMF1 miRanda miRanda
2026 chr1 156202177 156202177 1 + C G CESC 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATGACACAGCAAATGTATGACAAGTTTATA < 41bp 1 0.150617627492317 1 0.378735959529877 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202177 nonsynonymous SNV 0.990 3 26 hm5C_associated_SNPs_17852 0 0 0 3 156202163 156202183 mRNA hsa-miR-376a PMF1 miRanda miRanda
2027 chr1 156202177 156202177 1 + C G CESC 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATGACACAGCAAATGTATGACAAGTTTATA < 41bp 1 0.150617627492317 1 0.378735959529877 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202177 nonsynonymous SNV 0.990 3 26 hm5C_associated_SNPs_17852 0 0 0 3 156202162 156202183 mRNA hsa-miR-376b PMF1 miRanda miRanda
2028 chr7 33014871 33014871 1 + C T CESC 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTTAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG < 41bp 1 0.524284457935168 1 0.736395001411438 experiment 0.951431084129663 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014871 stopgain 0.998 1 4 hm5C_associated_SNPs_17880 0 0 1 1 33014845 33014871 mRNA hsa-miR-490-3p FKBP9 miRanda miRanda
2029 chr14 102805188 102805188 1 + G T CESC 102805183 + 102805163 102805203 41 CATTAGGAATCACAGAATTCCTACGGAAGAAAGAAATACAC CATTAGGAATCACAGAATTCCTACGTAAGAAAGAAATACAC < 41bp 1 0.435784978331259 1 0.453522086143494 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102805183 chr14:102805188 synonymous SNV . 0 26 hm5C_associated_SNPs_17947 0 0 1 1 102805171 102805191 mRNA hsa-miR-384 ZNF839 miRanda miRanda
2030 chrX 73043745 73043745 1 - C T CESC 73043732 - 73043712 73043752 41 GGGGCTCGGAACTACATGCCCTAGGATATAAAAATGATGTT GGGGCTCAGAACTACATGCCCTAGGATATAAAAATGATGTT < 41bp 1 0.307345318881287 1 0.382901281118393 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043732 chrX:73043745 . . 0 8 hm5C_associated_SNPs_17993 0 0 1 2 73043730 73043750 lncRNA hsa-miR-4761-3p XIST miRanda starBase2
2031 chrX 73043745 73043745 1 - C T CESC 73043732 - 73043712 73043752 41 GGGGCTCGGAACTACATGCCCTAGGATATAAAAATGATGTT GGGGCTCAGAACTACATGCCCTAGGATATAAAAATGATGTT < 41bp 1 0.307345318881287 1 0.382901281118393 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043732 chrX:73043745 . . 0 8 hm5C_associated_SNPs_17993 0 0 1 2 73043743 73043764 lncRNA hsa-miR-615-3p XIST miRanda starBase2
2032 chrX 73043745 73043745 1 - C T CESC 73043738 - 73043718 73043758 41 TTCTGTGGGGCTCGGAACTACATGCCCTAGGATATAAAAAT TTCTGTGGGGCTCAGAACTACATGCCCTAGGATATAAAAAT < 41bp 1 0.0430707912083503 1 0.159604221582413 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043738 chrX:73043745 . . 0 14 hm5C_associated_SNPs_17994 0 0 1 2 73043730 73043750 lncRNA hsa-miR-4761-3p XIST miRanda starBase2
2033 chrX 73043745 73043745 1 - C T CESC 73043738 - 73043718 73043758 41 TTCTGTGGGGCTCGGAACTACATGCCCTAGGATATAAAAAT TTCTGTGGGGCTCAGAACTACATGCCCTAGGATATAAAAAT < 41bp 1 0.0430707912083503 1 0.159604221582413 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043738 chrX:73043745 . . 0 14 hm5C_associated_SNPs_17994 0 0 1 2 73043743 73043764 lncRNA hsa-miR-615-3p XIST miRanda starBase2
2034 chrX 73043745 73043745 1 - C T CESC 73043746 - 73043726 73043766 41 TGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGGAT TGATTACTTTCTGTGGGGCTCAGAACTACATGCCCTAGGAT < 41bp 1 0.258361971615372 1 0.708385229110718 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043746 chrX:73043745 . . 0 22 hm5C_associated_SNPs_17995 0 0 1 2 73043730 73043750 lncRNA hsa-miR-4761-3p XIST miRanda starBase2
2035 chrX 73043745 73043745 1 - C T CESC 73043746 - 73043726 73043766 41 TGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGGAT TGATTACTTTCTGTGGGGCTCAGAACTACATGCCCTAGGAT < 41bp 1 0.258361971615372 1 0.708385229110718 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043746 chrX:73043745 . . 0 22 hm5C_associated_SNPs_17995 0 0 1 2 73043743 73043764 lncRNA hsa-miR-615-3p XIST miRanda starBase2
2036 chrX 73043745 73043745 1 - C T CESC 73043748 - 73043728 73043768 41 GGTGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGG GGTGATTACTTTCTGTGGGGCTCAGAACTACATGCCCTAGG < 41bp 1 0.125916924071082 1 0.10692685842514 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043748 chrX:73043745 . . 0 24 hm5C_associated_SNPs_17996 0 0 1 2 73043730 73043750 lncRNA hsa-miR-4761-3p XIST miRanda starBase2
2037 chrX 73043745 73043745 1 - C T CESC 73043748 - 73043728 73043768 41 GGTGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGG GGTGATTACTTTCTGTGGGGCTCAGAACTACATGCCCTAGG < 41bp 1 0.125916924071082 1 0.10692685842514 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043748 chrX:73043745 . . 0 24 hm5C_associated_SNPs_17996 0 0 1 2 73043743 73043764 lncRNA hsa-miR-615-3p XIST miRanda starBase2
2038 chr2 28521316 28521316 1 + A G CESC 28521298 + 28521278 28521318 41 TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCCGTACA TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCCGTGCA < 41bp 1 0.228533077084133 1 0.155998289585114 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28521298 chr2:28521316 nonsynonymous SNV 0.986 4 39 hm5C_associated_SNPs_18048 0 0 1 1 28521311 28521335 mRNA hsa-miR-324-5p BRE miRanda miRanda
2039 chrX 73046072 73046072 1 - C A CESC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.345014594886721 1 0.905385673046112 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046072 . . 0 18 hm5C_associated_SNPs_18063 0 0 1 11 73046051 73046072 lncRNA hsa-miR-23c XIST miRanda starBase2
2040 chrX 73046072 73046072 1 - C A CESC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.345014594886721 1 0.905385673046112 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046072 . . 0 18 hm5C_associated_SNPs_18063 0 0 1 11 73046062 73046085 lncRNA hsa-miR-518d-5p XIST miRanda starBase2
2041 chrX 73046072 73046072 1 - C A CESC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.345014594886721 1 0.905385673046112 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046072 . . 0 18 hm5C_associated_SNPs_18063 0 0 1 11 73046062 73046085 lncRNA hsa-miR-518e-5p XIST miRanda starBase2
2042 chrX 73046072 73046072 1 - C A CESC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.345014594886721 1 0.905385673046112 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046072 . . 0 18 hm5C_associated_SNPs_18063 0 0 1 11 73046062 73046085 lncRNA hsa-miR-518f-5p XIST miRanda starBase2
2043 chrX 73046072 73046072 1 - C A CESC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.345014594886721 1 0.905385673046112 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046072 . . 0 18 hm5C_associated_SNPs_18063 0 0 1 11 73046062 73046085 lncRNA hsa-miR-519a-5p XIST miRanda starBase2
2044 chrX 73046072 73046072 1 - C A CESC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.345014594886721 1 0.905385673046112 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046072 . . 0 18 hm5C_associated_SNPs_18063 0 0 1 11 73046062 73046085 lncRNA hsa-miR-519b-5p XIST miRanda starBase2
2045 chrX 73046072 73046072 1 - C A CESC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.345014594886721 1 0.905385673046112 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046072 . . 0 18 hm5C_associated_SNPs_18063 0 0 1 11 73046062 73046085 lncRNA hsa-miR-519c-5p XIST miRanda starBase2
2046 chrX 73046072 73046072 1 - C A CESC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.345014594886721 1 0.905385673046112 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046072 . . 0 18 hm5C_associated_SNPs_18063 0 0 1 11 73046062 73046085 lncRNA hsa-miR-520c-5p XIST miRanda starBase2
2047 chrX 73046072 73046072 1 - C A CESC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.345014594886721 1 0.905385673046112 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046072 . . 0 18 hm5C_associated_SNPs_18063 0 0 1 11 73046062 73046085 lncRNA hsa-miR-522-5p XIST miRanda starBase2
2048 chrX 73046072 73046072 1 - C A CESC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.345014594886721 1 0.905385673046112 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046072 . . 0 18 hm5C_associated_SNPs_18063 0 0 1 11 73046062 73046085 lncRNA hsa-miR-523-5p XIST miRanda starBase2
2049 chrX 73046072 73046072 1 - C A CESC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.345014594886721 1 0.905385673046112 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046072 . . 0 18 hm5C_associated_SNPs_18063 0 0 1 11 73046062 73046085 lncRNA hsa-miR-526a XIST miRanda starBase2
2050 chrX 73046072 73046072 1 - C A CESC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATG < 41bp 1 0.0665782381892902 1 0.0737722814083099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046072 . . 0 24 hm5C_associated_SNPs_18064 0 0 1 11 73046051 73046072 lncRNA hsa-miR-23c XIST miRanda starBase2
2051 chrX 73046072 73046072 1 - C A CESC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATG < 41bp 1 0.0665782381892902 1 0.0737722814083099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046072 . . 0 24 hm5C_associated_SNPs_18064 0 0 1 11 73046062 73046085 lncRNA hsa-miR-518d-5p XIST miRanda starBase2
2052 chrX 73046072 73046072 1 - C A CESC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATG < 41bp 1 0.0665782381892902 1 0.0737722814083099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046072 . . 0 24 hm5C_associated_SNPs_18064 0 0 1 11 73046062 73046085 lncRNA hsa-miR-518e-5p XIST miRanda starBase2
2053 chrX 73046072 73046072 1 - C A CESC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATG < 41bp 1 0.0665782381892902 1 0.0737722814083099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046072 . . 0 24 hm5C_associated_SNPs_18064 0 0 1 11 73046062 73046085 lncRNA hsa-miR-518f-5p XIST miRanda starBase2
2054 chrX 73046072 73046072 1 - C A CESC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATG < 41bp 1 0.0665782381892902 1 0.0737722814083099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046072 . . 0 24 hm5C_associated_SNPs_18064 0 0 1 11 73046062 73046085 lncRNA hsa-miR-519a-5p XIST miRanda starBase2
2055 chrX 73046072 73046072 1 - C A CESC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATG < 41bp 1 0.0665782381892902 1 0.0737722814083099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046072 . . 0 24 hm5C_associated_SNPs_18064 0 0 1 11 73046062 73046085 lncRNA hsa-miR-519b-5p XIST miRanda starBase2
2056 chrX 73046072 73046072 1 - C A CESC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATG < 41bp 1 0.0665782381892902 1 0.0737722814083099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046072 . . 0 24 hm5C_associated_SNPs_18064 0 0 1 11 73046062 73046085 lncRNA hsa-miR-519c-5p XIST miRanda starBase2
2057 chrX 73046072 73046072 1 - C A CESC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATG < 41bp 1 0.0665782381892902 1 0.0737722814083099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046072 . . 0 24 hm5C_associated_SNPs_18064 0 0 1 11 73046062 73046085 lncRNA hsa-miR-520c-5p XIST miRanda starBase2
2058 chrX 73046072 73046072 1 - C A CESC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATG < 41bp 1 0.0665782381892902 1 0.0737722814083099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046072 . . 0 24 hm5C_associated_SNPs_18064 0 0 1 11 73046062 73046085 lncRNA hsa-miR-522-5p XIST miRanda starBase2
2059 chrX 73046072 73046072 1 - C A CESC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATG < 41bp 1 0.0665782381892902 1 0.0737722814083099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046072 . . 0 24 hm5C_associated_SNPs_18064 0 0 1 11 73046062 73046085 lncRNA hsa-miR-523-5p XIST miRanda starBase2
2060 chrX 73046072 73046072 1 - C A CESC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATG < 41bp 1 0.0665782381892902 1 0.0737722814083099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046072 . . 0 24 hm5C_associated_SNPs_18064 0 0 1 11 73046062 73046085 lncRNA hsa-miR-526a XIST miRanda starBase2
2061 chrX 73046072 73046072 1 - C A CESC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAAT < 41bp 1 0.0616509729323631 1 0.0856037437915802 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046072 . . 0 25 hm5C_associated_SNPs_18065 0 0 1 11 73046051 73046072 lncRNA hsa-miR-23c XIST miRanda starBase2
2062 chrX 73046072 73046072 1 - C A CESC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAAT < 41bp 1 0.0616509729323631 1 0.0856037437915802 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046072 . . 0 25 hm5C_associated_SNPs_18065 0 0 1 11 73046062 73046085 lncRNA hsa-miR-518d-5p XIST miRanda starBase2
2063 chrX 73046072 73046072 1 - C A CESC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAAT < 41bp 1 0.0616509729323631 1 0.0856037437915802 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046072 . . 0 25 hm5C_associated_SNPs_18065 0 0 1 11 73046062 73046085 lncRNA hsa-miR-518e-5p XIST miRanda starBase2
2064 chrX 73046072 73046072 1 - C A CESC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAAT < 41bp 1 0.0616509729323631 1 0.0856037437915802 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046072 . . 0 25 hm5C_associated_SNPs_18065 0 0 1 11 73046062 73046085 lncRNA hsa-miR-518f-5p XIST miRanda starBase2
2065 chrX 73046072 73046072 1 - C A CESC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAAT < 41bp 1 0.0616509729323631 1 0.0856037437915802 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046072 . . 0 25 hm5C_associated_SNPs_18065 0 0 1 11 73046062 73046085 lncRNA hsa-miR-519a-5p XIST miRanda starBase2
2066 chrX 73046072 73046072 1 - C A CESC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAAT < 41bp 1 0.0616509729323631 1 0.0856037437915802 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046072 . . 0 25 hm5C_associated_SNPs_18065 0 0 1 11 73046062 73046085 lncRNA hsa-miR-519b-5p XIST miRanda starBase2
2067 chrX 73046072 73046072 1 - C A CESC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAAT < 41bp 1 0.0616509729323631 1 0.0856037437915802 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046072 . . 0 25 hm5C_associated_SNPs_18065 0 0 1 11 73046062 73046085 lncRNA hsa-miR-519c-5p XIST miRanda starBase2
2068 chrX 73046072 73046072 1 - C A CESC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAAT < 41bp 1 0.0616509729323631 1 0.0856037437915802 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046072 . . 0 25 hm5C_associated_SNPs_18065 0 0 1 11 73046062 73046085 lncRNA hsa-miR-520c-5p XIST miRanda starBase2
2069 chrX 73046072 73046072 1 - C A CESC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAAT < 41bp 1 0.0616509729323631 1 0.0856037437915802 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046072 . . 0 25 hm5C_associated_SNPs_18065 0 0 1 11 73046062 73046085 lncRNA hsa-miR-522-5p XIST miRanda starBase2
2070 chrX 73046072 73046072 1 - C A CESC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAAT < 41bp 1 0.0616509729323631 1 0.0856037437915802 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046072 . . 0 25 hm5C_associated_SNPs_18065 0 0 1 11 73046062 73046085 lncRNA hsa-miR-523-5p XIST miRanda starBase2
2071 chrX 73046072 73046072 1 - C A CESC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAAT < 41bp 1 0.0616509729323631 1 0.0856037437915802 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046072 . . 0 25 hm5C_associated_SNPs_18065 0 0 1 11 73046062 73046085 lncRNA hsa-miR-526a XIST miRanda starBase2
2072 chr14 105936295 105936295 1 + G A CESC 105936285 + 105936265 105936305 41 CGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTT CGGCGGCGGATGAACTGGATCGACGCCCCGAATGACGTGTT < 41bp 1 0.563651921034756 1 0.681366324424744 experiment 0.872696157930488 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936285 chr14:105936295 nonsynonymous SNV 0.934 0 31 hm5C_associated_SNPs_18109 0 0 1 1 105936289 105936310 mRNA hsa-miR-30a MTA1 miRanda miRanda
2073 chr14 105936295 105936295 1 + G A CESC 105936315 + 105936295 105936335 41 GATGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGG AATGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGG < 41bp 1 0.534526544067363 1 0.685532450675964 experiment 0.930946911865274 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936315 chr14:105936295 nonsynonymous SNV 0.934 0 1 hm5C_associated_SNPs_18110 0 0 1 1 105936289 105936310 mRNA hsa-miR-30a MTA1 miRanda miRanda
2074 chr19 49469847 49469847 1 + A G CESC 49469831 + 49469811 49469851 41 GTTTCTAATTTCTCCCTCTTCTCTCTCAGCTCTGTGACTTC GTTTCTAATTTCTCCCTCTTCTCTCTCAGCTCTGTGGCTTC < 41bp 1 0.301485068031866 1 0.227178931236267 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469831 chr19:49469847 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_18129 0 0 1 1 49469832 49469851 mRNA hsa-miR-224 FTL miRanda miRanda
2075 chr20 62562222 62562222 1 + G A CESC 62562230 + 62562210 62562250 41 TTTGTCTTCTGCGGCCTCCTCACGTGCTGCTACTGCTGCTG TTTGTCTTCTGCAGCCTCCTCACGTGCTGCTACTGCTGCTG < 41bp 1 0.610954571641272 1 0.430665254592896 experiment 0.778090856717455 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62562230 chr20:62562222 nonsynonymous SNV 0.754 1 13 hm5C_associated_SNPs_18187 0 0 1 6 62562220 62562241 mRNA hsa-miR-15a DNAJC5 miRanda miRanda
2076 chr20 62562222 62562222 1 + G A CESC 62562230 + 62562210 62562250 41 TTTGTCTTCTGCGGCCTCCTCACGTGCTGCTACTGCTGCTG TTTGTCTTCTGCAGCCTCCTCACGTGCTGCTACTGCTGCTG < 41bp 1 0.610954571641272 1 0.430665254592896 experiment 0.778090856717455 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62562230 chr20:62562222 nonsynonymous SNV 0.754 1 13 hm5C_associated_SNPs_18187 0 0 1 6 62562220 62562241 mRNA hsa-miR-16 DNAJC5 miRanda miRanda
2077 chr20 62562222 62562222 1 + G A CESC 62562230 + 62562210 62562250 41 TTTGTCTTCTGCGGCCTCCTCACGTGCTGCTACTGCTGCTG TTTGTCTTCTGCAGCCTCCTCACGTGCTGCTACTGCTGCTG < 41bp 1 0.610954571641272 1 0.430665254592896 experiment 0.778090856717455 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62562230 chr20:62562222 nonsynonymous SNV 0.754 1 13 hm5C_associated_SNPs_18187 0 0 1 6 62562220 62562241 mRNA hsa-miR-15b DNAJC5 miRanda miRanda
2078 chr20 62562222 62562222 1 + G A CESC 62562230 + 62562210 62562250 41 TTTGTCTTCTGCGGCCTCCTCACGTGCTGCTACTGCTGCTG TTTGTCTTCTGCAGCCTCCTCACGTGCTGCTACTGCTGCTG < 41bp 1 0.610954571641272 1 0.430665254592896 experiment 0.778090856717455 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62562230 chr20:62562222 nonsynonymous SNV 0.754 1 13 hm5C_associated_SNPs_18187 0 0 1 6 62562221 62562241 mRNA hsa-miR-195 DNAJC5 miRanda miRanda
2079 chr20 62562222 62562222 1 + G A CESC 62562230 + 62562210 62562250 41 TTTGTCTTCTGCGGCCTCCTCACGTGCTGCTACTGCTGCTG TTTGTCTTCTGCAGCCTCCTCACGTGCTGCTACTGCTGCTG < 41bp 1 0.610954571641272 1 0.430665254592896 experiment 0.778090856717455 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62562230 chr20:62562222 nonsynonymous SNV 0.754 1 13 hm5C_associated_SNPs_18187 0 0 1 6 62562220 62562241 mRNA hsa-miR-424 DNAJC5 miRanda miRanda
2080 chr20 62562222 62562222 1 + G A CESC 62562230 + 62562210 62562250 41 TTTGTCTTCTGCGGCCTCCTCACGTGCTGCTACTGCTGCTG TTTGTCTTCTGCAGCCTCCTCACGTGCTGCTACTGCTGCTG < 41bp 1 0.610954571641272 1 0.430665254592896 experiment 0.778090856717455 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62562230 chr20:62562222 nonsynonymous SNV 0.754 1 13 hm5C_associated_SNPs_18187 0 0 1 6 62562222 62562241 mRNA hsa-miR-497 DNAJC5 miRanda miRanda
2081 chr21 46624585 46624585 1 + T C CESC 46624567 + 46624547 46624587 41 GCAGCCTTTACCACGGGGACCACCTTTCCAGGGCCATGTAC GCAGCCTTTACCACGGGGACCACCTTTCCAGGGCCATGCAC < 41bp 1 0.369733471513309 1 0.0747115314006805 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46624567 chr21:46624585 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_18191 0 0 0 1 46624563 46624586 mRNA hsa-miR-193b ADARB1 miRanda miRanda
2082 chr2 157407249 157407249 1 + G A CESC 157407233 + 157407213 157407253 41 GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGGTTAT GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGATTAT < 41bp 1 0.144308249846649 1 0.275337010622025 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407233 chr2:157407249 nonsynonymous SNV 0.983 1 37 hm5C_associated_SNPs_18225 0 0 1 3 157407246 157407258 mRNA hsa-miR-330-5p GPD2 miRanda miRanda
2083 chr2 157407249 157407249 1 + G A CESC 157407233 + 157407213 157407253 41 GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGGTTAT GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGATTAT < 41bp 1 0.144308249846649 1 0.275337010622025 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407233 chr2:157407249 nonsynonymous SNV 0.983 1 37 hm5C_associated_SNPs_18225 0 0 1 3 157407247 157407258 mRNA hsa-miR-326 GPD2 miRanda miRanda
2084 chr2 157407249 157407249 1 + G A CESC 157407233 + 157407213 157407253 41 GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGGTTAT GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGATTAT < 41bp 1 0.144308249846649 1 0.275337010622025 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407233 chr2:157407249 nonsynonymous SNV 0.983 1 37 hm5C_associated_SNPs_18225 0 0 1 3 157407229 157407250 mRNA hsa-miR-338-3p GPD2 miRanda miRanda
2085 chr6 26468224 26468224 1 + C T CESC 26468231 + 26468211 26468251 41 GATCTCTTCCTGTCAGAGGACCGGAGAAGTGTGAGAAGGTG GATCTCTTCCTGTTAGAGGACCGGAGAAGTGTGAGAAGGTG < 41bp 1 0.798016918459553 1 0.499956339597702 experiment 0.403966163080895 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26468231 chr6:26468224 nonsynonymous SNV 0.968 3 14 hm5C_associated_SNPs_18242 0 0 1 1 26468224 26468246 mRNA hsa-miR-342-3p BTN2A1 miRanda miRanda
2086 chr13 48937001 48937001 1 + C T CESC 48936995 + 48936975 48937015 41 GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCA GTTCACCTCGAACACCCAGGCGAGGTTAGAACAGGAGTGCA < 41bp 1 0.693117081448509 1 0.801494300365448 experiment 0.613765837102982 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48936995 chr13:48937001 stopgain 1.000 1 27 hm5C_associated_SNPs_18247 0 0 1 1 48936998 48937019 mRNA hsa-miR-148a RB1 miRanda miRanda
2087 chr1 2087470 2087470 1 + G C CESC 2087488 + 2087468 2087508 41 TTGAGCAGGCATCCAGCAACCCCTTCCTGGTCGGATTACAC TTCAGCAGGCATCCAGCAACCCCTTCCTGGTCGGATTACAC < 41bp 1 0.0674006009686283 1 0.0408521890640259 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCZ ENSG00000067606 CDS Human protein_coding chr1:2087488 chr1:2087470 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_18311 0 0 1 1 2087453 2087473 mRNA hsa-miR-371-5p PRKCZ miRanda miRanda
2088 chr17 35346666 35346666 1 + G C CESC 35346663 + 35346643 35346683 41 TCTATCGAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCT TCTATCGAGTTCTTGGCAAACCTCAGCCAGCAGCTCAGCCT < 41bp 1 0.464274922771437 1 0.0423479974269867 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AATF ENSG00000108270 CDS Human other chr17:35346663 chr17:35346666 nonsynonymous SNV 0.919 1 24 hm5C_associated_SNPs_18343 0 0 0 1 35346649 35346671 mRNA hsa-miR-24 AATF miRanda miRanda
2089 chr17 35346678 35346678 1 + C T CESC 35346663 + 35346643 35346683 41 TCTATCGAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCT TCTATCGAGTTCTTGGCAAACCTGAGCCAGCAGCTTAGCCT < 41bp 1 0.559759148343467 1 0.0396811068058014 experiment 0.880481703313066 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AATF ENSG00000108270 CDS Human other chr17:35346663 chr17:35346678 stopgain 0.030 0 36 hm5C_associated_SNPs_18345 0 0 0 2 35346674 35346693 mRNA hsa-miR-330-5p AATF miRanda miRanda
2090 chr17 35346678 35346678 1 + C T CESC 35346663 + 35346643 35346683 41 TCTATCGAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCT TCTATCGAGTTCTTGGCAAACCTGAGCCAGCAGCTTAGCCT < 41bp 1 0.559759148343467 1 0.0396811068058014 experiment 0.880481703313066 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AATF ENSG00000108270 CDS Human other chr17:35346663 chr17:35346678 stopgain 0.030 0 36 hm5C_associated_SNPs_18345 0 0 0 2 35346674 35346693 mRNA hsa-miR-326 AATF miRanda miRanda
2091 chrX 73043756 73043756 1 - G A CESC 73043738 - 73043718 73043758 41 TTCTGTGGGGCTCGGAACTACATGCCCTAGGATATAAAAAT TTTTGTGGGGCTCGGAACTACATGCCCTAGGATATAAAAAT < 41bp 1 0.0633725491673816 1 0.240299433469772 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043738 chrX:73043756 . . 0 3 hm5C_associated_SNPs_18352 0 0 1 1 73043743 73043764 lncRNA hsa-miR-615-3p XIST miRanda starBase2
2092 chrX 73043756 73043756 1 - G A CESC 73043746 - 73043726 73043766 41 TGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGGAT TGATTACTTTTTGTGGGGCTCGGAACTACATGCCCTAGGAT < 41bp 1 0.280522624288219 1 0.786957263946533 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043746 chrX:73043756 . . 0 11 hm5C_associated_SNPs_18353 0 0 1 1 73043743 73043764 lncRNA hsa-miR-615-3p XIST miRanda starBase2
2093 chrX 73043756 73043756 1 - G A CESC 73043748 - 73043728 73043768 41 GGTGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGG GGTGATTACTTTTTGTGGGGCTCGGAACTACATGCCCTAGG < 41bp 1 0.269697093183617 1 0.21326008439064 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043748 chrX:73043756 . . 0 13 hm5C_associated_SNPs_18354 0 0 1 1 73043743 73043764 lncRNA hsa-miR-615-3p XIST miRanda starBase2
2094 chr3 186503991 186503991 1 + G T CESC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCATATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT < 41bp 1 0.126999622749416 1 0.107707589864731 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186503991 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_18374 0 0 1 1 186503978 186504001 mRNA hsa-miR-181b EIF4A2 miRanda miRanda
2095 chr20 61291826 61291826 1 + C T CESC 61291833 + 61291813 61291853 41 GGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCCGT GGCTTCCTGGGCTTTGGGGCCGCTGCTTTCTTCACCGCCGT < 41bp 1 0.425805406602235 1 0.392410486936569 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61291833 chr20:61291826 nonsynonymous SNV 0.027 1 14 hm5C_associated_SNPs_18412 0 0 0 1 61291818 61291840 mRNA hsa-miR-503 SLCO4A1 miRanda miRanda
2096 chr5 74865228 74865228 1 + G A CESC 74865247 + 74865227 74865267 41 TGACATGGATGCTTTCTATGCAGCTGTAGAAATGAGGGACA TAACATGGATGCTTTCTATGCAGCTGTAGAAATGAGGGACA < 41bp 1 0.708830518087202 1 0.204555988311768 experiment 0.582338963825596 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLK ENSG00000122008 CDS Human protein_coding chr5:74865247 chr5:74865228 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_18446 0 0 1 1 74865227 74865249 mRNA hsa-miR-153 POLK miRanda miRanda
2097 chr17 18638431 18638431 1 + G A CESC 18638429 + 18638409 18638449 41 TGACCTGCAAAGGCATCGACCAGAAAGGGGAGGAGCGCAGC TGACCTGCAAAGGCATCGACCAAAAAGGGGAGGAGCGCAGC < 41bp 1 0.656723512767374 1 0.680527150630951 experiment 0.686552974465252 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18638429 chr17:18638431 synonymous SNV . 0 23 hm5C_associated_SNPs_18451 0 0 0 1 18638426 18638449 mRNA hsa-miR-149 TRIM16L miRanda miRanda
2098 chr15 52188684 52188684 1 + C T CESC 52188695 + 52188675 52188715 41 GAAATGTTTCAGTCTTGCAGCCACCCGGAGCAATGACCCTG GAAATGTTTTAGTCTTGCAGCCACCCGGAGCAATGACCCTG < 41bp 1 0.0901589625523675 1 0.0531454980373383 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMOD3 ENSG00000138594 CDS Human protein_coding chr15:52188695 chr15:52188684 synonymous SNV . 0 10 hm5C_associated_SNPs_18503 0 0 1 1 52188663 52188685 mRNA hsa-miR-494 TMOD3 miRanda miRanda
2099 chr8 22037970 22037970 1 + C T CESC 22037952 + 22037932 22037972 41 ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGCGC ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGTGC < 41bp 1 0.357374364209623 1 0.0936912596225739 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037952 chr8:22037970 nonsynonymous SNV 0.993 3 39 hm5C_associated_SNPs_18508 0 0 1 1 22037965 22037984 mRNA hsa-miR-542-3p BMP1 miRanda miRanda
2100 chr10 70506953 70506953 1 + G A CESC 70506935 + 70506915 70506955 41 CAGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAG CAGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAG < 41bp 1 0.133947024210604 1 0.219482392072678 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506935 chr10:70506953 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_18521 0 0 1 3 70506947 70506974 mRNA hsa-miR-302a CCAR1 miRanda miRanda
2101 chr10 70506953 70506953 1 + G A CESC 70506935 + 70506915 70506955 41 CAGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAG CAGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAG < 41bp 1 0.133947024210604 1 0.219482392072678 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506935 chr10:70506953 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_18521 0 0 1 3 70506951 70506974 mRNA hsa-miR-373 CCAR1 miRanda miRanda
2102 chr10 70506953 70506953 1 + G A CESC 70506935 + 70506915 70506955 41 CAGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAG CAGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAG < 41bp 1 0.133947024210604 1 0.219482392072678 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506935 chr10:70506953 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_18521 0 0 1 3 70506952 70506974 mRNA hsa-miR-520a-3p CCAR1 miRanda miRanda
2103 chr10 70506953 70506953 1 + G A CESC 70506936 + 70506916 70506956 41 AGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGT AGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGT < 41bp 1 0.168747511264222 1 0.127678543329239 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506936 chr10:70506953 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_18522 0 0 1 3 70506947 70506974 mRNA hsa-miR-302a CCAR1 miRanda miRanda
2104 chr10 70506953 70506953 1 + G A CESC 70506936 + 70506916 70506956 41 AGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGT AGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGT < 41bp 1 0.168747511264222 1 0.127678543329239 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506936 chr10:70506953 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_18522 0 0 1 3 70506951 70506974 mRNA hsa-miR-373 CCAR1 miRanda miRanda
2105 chr10 70506953 70506953 1 + G A CESC 70506936 + 70506916 70506956 41 AGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGT AGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGT < 41bp 1 0.168747511264222 1 0.127678543329239 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506936 chr10:70506953 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_18522 0 0 1 3 70506952 70506974 mRNA hsa-miR-520a-3p CCAR1 miRanda miRanda
2106 chr10 70506953 70506953 1 + G A CESC 70506937 + 70506917 70506957 41 GTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTA GTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGTA < 41bp 1 0.520189509124176 1 0.278316110372543 experiment 0.959620981751648 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506937 chr10:70506953 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_18523 0 0 1 3 70506947 70506974 mRNA hsa-miR-302a CCAR1 miRanda miRanda
2107 chr10 70506953 70506953 1 + G A CESC 70506937 + 70506917 70506957 41 GTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTA GTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGTA < 41bp 1 0.520189509124176 1 0.278316110372543 experiment 0.959620981751648 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506937 chr10:70506953 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_18523 0 0 1 3 70506951 70506974 mRNA hsa-miR-373 CCAR1 miRanda miRanda
2108 chr10 70506953 70506953 1 + G A CESC 70506937 + 70506917 70506957 41 GTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTA GTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGTA < 41bp 1 0.520189509124176 1 0.278316110372543 experiment 0.959620981751648 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506937 chr10:70506953 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_18523 0 0 1 3 70506952 70506974 mRNA hsa-miR-520a-3p CCAR1 miRanda miRanda
2109 chr10 70506953 70506953 1 + G A CESC 70506938 + 70506918 70506958 41 TGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTAT TGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGTAT < 41bp 1 0.373345607275869 1 0.307306945323944 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506938 chr10:70506953 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_18524 0 0 1 3 70506947 70506974 mRNA hsa-miR-302a CCAR1 miRanda miRanda
2110 chr10 70506953 70506953 1 + G A CESC 70506938 + 70506918 70506958 41 TGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTAT TGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGTAT < 41bp 1 0.373345607275869 1 0.307306945323944 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506938 chr10:70506953 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_18524 0 0 1 3 70506951 70506974 mRNA hsa-miR-373 CCAR1 miRanda miRanda
2111 chr10 70506953 70506953 1 + G A CESC 70506938 + 70506918 70506958 41 TGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTAT TGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGTAT < 41bp 1 0.373345607275869 1 0.307306945323944 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506938 chr10:70506953 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_18524 0 0 1 3 70506952 70506974 mRNA hsa-miR-520a-3p CCAR1 miRanda miRanda
2112 chr5 9549019 9549019 1 + C T CESC 9549001 + 9548981 9549021 41 TGTGACTTGAAAAATGCCATCCATTTCCTGATTCACCTCAA TGTGACTTGAAAAATGCCATCCATTTCCTGATTCACCTTAA < 41bp 1 0.0663466595868151 1 0.034344494342804 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD123 ENSG00000250786 ncRNA_intronic Human lincRNA chr5:9549001 chr5:9549019 . . 0 39 hm5C_associated_SNPs_18538 0 0 0 2 9549000 9549020 mRNA hsa-miR-143 SNORD123 miRanda miRanda
2113 chr5 9549019 9549019 1 + C T CESC 9549001 + 9548981 9549021 41 TGTGACTTGAAAAATGCCATCCATTTCCTGATTCACCTCAA TGTGACTTGAAAAATGCCATCCATTTCCTGATTCACCTTAA < 41bp 1 0.0663466595868151 1 0.034344494342804 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD123 ENSG00000250786 ncRNA_intronic Human lincRNA chr5:9549001 chr5:9549019 . . 0 39 hm5C_associated_SNPs_18538 0 0 0 2 9549001 9549020 mRNA hsa-miR-125a-3p SNORD123 miRanda miRanda
2114 chr5 9549019 9549019 1 + C T CESC 9549002 + 9548982 9549022 41 GTGACTTGAAAAATGCCATCCATTTCCTGATTCACCTCAAT GTGACTTGAAAAATGCCATCCATTTCCTGATTCACCTTAAT < 41bp 1 0.0228093072585839 1 0.065372109413147 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD123 ENSG00000250786 ncRNA_intronic Human lincRNA chr5:9549002 chr5:9549019 . . 0 38 hm5C_associated_SNPs_18539 0 0 0 2 9549000 9549020 mRNA hsa-miR-143 SNORD123 miRanda miRanda
2115 chr5 9549019 9549019 1 + C T CESC 9549002 + 9548982 9549022 41 GTGACTTGAAAAATGCCATCCATTTCCTGATTCACCTCAAT GTGACTTGAAAAATGCCATCCATTTCCTGATTCACCTTAAT < 41bp 1 0.0228093072585839 1 0.065372109413147 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD123 ENSG00000250786 ncRNA_intronic Human lincRNA chr5:9549002 chr5:9549019 . . 0 38 hm5C_associated_SNPs_18539 0 0 0 2 9549001 9549020 mRNA hsa-miR-125a-3p SNORD123 miRanda miRanda
2116 chr5 9549019 9549019 1 + C T CESC 9549007 + 9548987 9549027 41 TTGAAAAATGCCATCCATTTCCTGATTCACCTCAATTCTGT TTGAAAAATGCCATCCATTTCCTGATTCACCTTAATTCTGT < 41bp 1 0.340367638911924 1 0.0644253194332123 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD123 ENSG00000250786 ncRNA_intronic Human lincRNA chr5:9549007 chr5:9549019 . . 0 33 hm5C_associated_SNPs_18540 0 0 0 2 9549000 9549020 mRNA hsa-miR-143 SNORD123 miRanda miRanda
2117 chr5 9549019 9549019 1 + C T CESC 9549007 + 9548987 9549027 41 TTGAAAAATGCCATCCATTTCCTGATTCACCTCAATTCTGT TTGAAAAATGCCATCCATTTCCTGATTCACCTTAATTCTGT < 41bp 1 0.340367638911924 1 0.0644253194332123 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD123 ENSG00000250786 ncRNA_intronic Human lincRNA chr5:9549007 chr5:9549019 . . 0 33 hm5C_associated_SNPs_18540 0 0 0 2 9549001 9549020 mRNA hsa-miR-125a-3p SNORD123 miRanda miRanda
2118 chr22 37425517 37425517 1 + G A CESC 37425514 + 37425494 37425534 41 AGTGGTACATGCGCGCCCGGCCCGAGGATGTCATCTCAGAG AGTGGTACATGCGCGCCCGGCCCAAGGATGTCATCTCAGAG < 41bp 1 0.417125221307175 1 0.286644577980042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control MPST ENSG00000128309 CDS Human protein_coding chr22:37425514 chr22:37425517 nonsynonymous SNV 0.019 1 24 hm5C_associated_SNPs_18546 0 0 1 1 37425511 37425531 mRNA hsa-miR-143 MPST miRanda miRanda
2119 chr22 37425517 37425517 1 + G A CESC 37425515 + 37425495 37425535 41 GTGGTACATGCGCGCCCGGCCCGAGGATGTCATCTCAGAGG GTGGTACATGCGCGCCCGGCCCAAGGATGTCATCTCAGAGG < 41bp 1 0.308527744746388 1 0.356207370758057 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MPST ENSG00000128309 CDS Human protein_coding chr22:37425515 chr22:37425517 nonsynonymous SNV 0.019 1 23 hm5C_associated_SNPs_18547 0 0 1 1 37425511 37425531 mRNA hsa-miR-143 MPST miRanda miRanda
2120 chr22 37425517 37425517 1 + G A CESC 37425537 + 37425517 37425557 41 GAGGATGTCATCTCAGAGGGCCGGGGGAAGACCCACTGAAG AAGGATGTCATCTCAGAGGGCCGGGGGAAGACCCACTGAAG < 41bp 1 0.657584254257925 1 0.894755065441132 experiment 0.68483149148415 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MPST ENSG00000128309 CDS Human protein_coding chr22:37425537 chr22:37425517 nonsynonymous SNV 0.019 1 1 hm5C_associated_SNPs_18548 0 0 1 1 37425511 37425531 mRNA hsa-miR-143 MPST miRanda miRanda
2121 chr2 71660368 71660368 1 + A G CESC 71660380 + 71660360 71660400 41 GAAAAAGCAATGACAAATCACTGCAAGAGTACACGTCATAA GAAAAAGCGATGACAAATCACTGCAAGAGTACACGTCATAA < 41bp 1 0.688829679407364 1 0.389955699443817 experiment 0.622340641185272 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71660380 chr2:71660368 synonymous SNV . 0 9 hm5C_associated_SNPs_18621 0 0 1 3 71660350 71660372 mRNA hsa-miR-137 ZNF638 miRanda miRanda
2122 chr2 71660368 71660368 1 + A G CESC 71660380 + 71660360 71660400 41 GAAAAAGCAATGACAAATCACTGCAAGAGTACACGTCATAA GAAAAAGCGATGACAAATCACTGCAAGAGTACACGTCATAA < 41bp 1 0.688829679407364 1 0.389955699443817 experiment 0.622340641185272 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71660380 chr2:71660368 synonymous SNV . 0 9 hm5C_associated_SNPs_18621 0 0 1 3 71660366 71660389 mRNA hsa-miR-431 ZNF638 miRanda miRanda
2123 chr2 71660368 71660368 1 + A G CESC 71660380 + 71660360 71660400 41 GAAAAAGCAATGACAAATCACTGCAAGAGTACACGTCATAA GAAAAAGCGATGACAAATCACTGCAAGAGTACACGTCATAA < 41bp 1 0.688829679407364 1 0.389955699443817 experiment 0.622340641185272 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71660380 chr2:71660368 synonymous SNV . 0 9 hm5C_associated_SNPs_18621 0 0 1 3 71660355 71660375 mRNA hsa-miR-33b ZNF638 miRanda miRanda
2124 chr2 39008747 39008747 1 + G A CESC 39008755 + 39008735 39008775 41 GAAACTATGAATGAAGGGGACCATAGAGTGAGGGAGAAGCT GAAACTATGAATAAAGGGGACCATAGAGTGAGGGAGAAGCT < 41bp 1 0.193001654923801 1 0.0817839801311493 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008755 chr2:39008747 nonsynonymous SNV 0.867 2 13 hm5C_associated_SNPs_18706 0 0 1 1 39008731 39008752 mRNA hsa-miR-205 GEMIN6 miRanda miRanda
2125 chr12 95877012 95877012 1 + G A CESC 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGCGATGGAGATGAAGCAACTGGAAAGAAGAAGAAAA < 41bp 1 0.463340241941279 1 0.393874019384384 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877012 nonsynonymous SNV 0.999 2 18 hm5C_associated_SNPs_18711 0 0 1 1 95877001 95877023 mRNA hsa-miR-145 METAP2 miRanda miRanda
2126 chr2 170804131 170804131 1 + T G CESC 170804126 + 170804106 170804146 41 TTAGTGTCAAACATGCGACACTTTATAAACTATGTTAGAGT TTAGTGTCAAACATGCGACACTTTAGAAACTATGTTAGAGT < 41bp 1 0.0741663281233972 1 0.0634437501430511 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR3 ENSG00000144357 CDS Human protein_coding chr2:170804126 chr2:170804131 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_18716 0 0 1 1 170804112 170804133 mRNA hsa-miR-340 UBR3 miRanda miRanda
2127 chrX 73044562 73044562 1 - G A CESC 73044553 - 73044533 73044573 41 GAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAATGT GAGATCCAGACTGAAAGTCACTTAATTCAGCTTGCGAATGT < 41bp 1 0.128028097479734 1 0.0293511152267456 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044553 chrX:73044562 . . 0 12 hm5C_associated_SNPs_18730 0 0 1 2 73044552 73044573 lncRNA hsa-miR-3164 XIST miRanda starBase2
2128 chrX 73044562 73044562 1 - G A CESC 73044553 - 73044533 73044573 41 GAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAATGT GAGATCCAGACTGAAAGTCACTTAATTCAGCTTGCGAATGT < 41bp 1 0.128028097479734 1 0.0293511152267456 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044553 chrX:73044562 . . 0 12 hm5C_associated_SNPs_18730 0 0 1 2 73044552 73044573 lncRNA hsa-miR-6820-3p XIST miRanda starBase2
2129 chrX 73044562 73044562 1 - G A CESC 73044555 - 73044535 73044575 41 GTGAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAAT GTGAGATCCAGACTGAAAGTCACTTAATTCAGCTTGCGAAT < 41bp 1 0.0711629641504003 1 0.0324897766113281 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044555 chrX:73044562 . . 0 14 hm5C_associated_SNPs_18731 0 0 1 2 73044552 73044573 lncRNA hsa-miR-3164 XIST miRanda starBase2
2130 chrX 73044562 73044562 1 - G A CESC 73044555 - 73044535 73044575 41 GTGAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAAT GTGAGATCCAGACTGAAAGTCACTTAATTCAGCTTGCGAAT < 41bp 1 0.0711629641504003 1 0.0324897766113281 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044555 chrX:73044562 . . 0 14 hm5C_associated_SNPs_18731 0 0 1 2 73044552 73044573 lncRNA hsa-miR-6820-3p XIST miRanda starBase2
2131 chrX 73044562 73044562 1 - G A CESC 73044568 - 73044548 73044588 41 TGAAGTAATAGATGTGAGATCCAGACCGAAAGTCACTTAAT TGAAGTAATAGATGTGAGATCCAGACTGAAAGTCACTTAAT < 41bp 1 0.327787422263919 1 0.688329696655273 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044568 chrX:73044562 . . 0 27 hm5C_associated_SNPs_18732 0 0 1 2 73044552 73044573 lncRNA hsa-miR-3164 XIST miRanda starBase2
2132 chrX 73044562 73044562 1 - G A CESC 73044568 - 73044548 73044588 41 TGAAGTAATAGATGTGAGATCCAGACCGAAAGTCACTTAAT TGAAGTAATAGATGTGAGATCCAGACTGAAAGTCACTTAAT < 41bp 1 0.327787422263919 1 0.688329696655273 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044568 chrX:73044562 . . 0 27 hm5C_associated_SNPs_18732 0 0 1 2 73044552 73044573 lncRNA hsa-miR-6820-3p XIST miRanda starBase2
2133 chr11 125513714 125513714 1 + G A CESC 125513698 + 125513678 125513718 41 CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGT CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGT < 41bp 1 0.261962316555723 1 0.259312987327576 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513698 chr11:125513714 nonsynonymous SNV 0.926 0 37 hm5C_associated_SNPs_18739 0 0 1 2 125513701 125513723 mRNA hsa-miR-362-3p CHEK1 miRanda miRanda
2134 chr11 125513714 125513714 1 + G A CESC 125513698 + 125513678 125513718 41 CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGT CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGT < 41bp 1 0.261962316555723 1 0.259312987327576 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513698 chr11:125513714 nonsynonymous SNV 0.926 0 37 hm5C_associated_SNPs_18739 0 0 1 2 125513702 125513723 mRNA hsa-miR-329 CHEK1 miRanda miRanda
2135 chr11 125513714 125513714 1 + G A CESC 125513699 + 125513679 125513719 41 TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTG TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGTG < 41bp 1 0.659326729908489 1 0.395488500595093 experiment 0.681346540183021 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513699 chr11:125513714 nonsynonymous SNV 0.926 0 36 hm5C_associated_SNPs_18740 0 0 1 2 125513701 125513723 mRNA hsa-miR-362-3p CHEK1 miRanda miRanda
2136 chr11 125513714 125513714 1 + G A CESC 125513699 + 125513679 125513719 41 TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTG TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGTG < 41bp 1 0.659326729908489 1 0.395488500595093 experiment 0.681346540183021 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513699 chr11:125513714 nonsynonymous SNV 0.926 0 36 hm5C_associated_SNPs_18740 0 0 1 2 125513702 125513723 mRNA hsa-miR-329 CHEK1 miRanda miRanda
2137 chr11 125513714 125513714 1 + G A CESC 125513700 + 125513680 125513720 41 TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGT TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGTGT < 41bp 1 0.104773726080322 1 0.168052792549133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513700 chr11:125513714 nonsynonymous SNV 0.926 0 35 hm5C_associated_SNPs_18741 0 0 1 2 125513701 125513723 mRNA hsa-miR-362-3p CHEK1 miRanda miRanda
2138 chr11 125513714 125513714 1 + G A CESC 125513700 + 125513680 125513720 41 TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGT TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGTGT < 41bp 1 0.104773726080322 1 0.168052792549133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513700 chr11:125513714 nonsynonymous SNV 0.926 0 35 hm5C_associated_SNPs_18741 0 0 1 2 125513702 125513723 mRNA hsa-miR-329 CHEK1 miRanda miRanda
2139 chr11 125513714 125513714 1 + G A CESC 125513701 + 125513681 125513721 41 TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTG TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGTGTG < 41bp 1 0.401436469656583 1 0.444914638996124 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513701 chr11:125513714 nonsynonymous SNV 0.926 0 34 hm5C_associated_SNPs_18742 0 0 1 2 125513701 125513723 mRNA hsa-miR-362-3p CHEK1 miRanda miRanda
2140 chr11 125513714 125513714 1 + G A CESC 125513701 + 125513681 125513721 41 TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTG TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGTGTG < 41bp 1 0.401436469656583 1 0.444914638996124 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513701 chr11:125513714 nonsynonymous SNV 0.926 0 34 hm5C_associated_SNPs_18742 0 0 1 2 125513702 125513723 mRNA hsa-miR-329 CHEK1 miRanda miRanda
2141 chr19 54711421 54711421 1 + G C CESC 54711401 + 54711381 54711421 41 AGGAAGAATGCCAAGAAGGGCCAGGGTGGGGCTGGGGCTGG AGGAAGAATGCCAAGAAGGGCCAGGGTGGGGCTGGGGCTGC < 41bp 1 0.799821531279489 1 0.46652764081955 experiment 0.400356937441023 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS9 ENSG00000170889 CDS Human protein_coding chr19:54711401 chr19:54711421 nonsynonymous SNV 0.947 1 41 hm5C_associated_SNPs_18795 0 0 1 1 54711408 54711430 mRNA hsa-miR-187 RPS9 miRanda miRanda
2142 chrX 73046913 73046913 1 - C G CESC 73046893 - 73046873 73046913 41 GATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAGC CATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAGC < 41bp 1 0.178396795618392 1 0.404325097799301 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046893 chrX:73046913 . . 0 1 hm5C_associated_SNPs_18807 0 0 1 3 73046902 73046921 lncRNA hsa-miR-371a-5p XIST miRanda starBase2
2143 chrX 73046913 73046913 1 - C G CESC 73046893 - 73046873 73046913 41 GATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAGC CATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAGC < 41bp 1 0.178396795618392 1 0.404325097799301 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046893 chrX:73046913 . . 0 1 hm5C_associated_SNPs_18807 0 0 1 3 73046894 73046920 lncRNA hsa-miR-513c-5p XIST miRanda starBase2
2144 chrX 73046913 73046913 1 - C G CESC 73046893 - 73046873 73046913 41 GATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAGC CATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAGC < 41bp 1 0.178396795618392 1 0.404325097799301 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046893 chrX:73046913 . . 0 1 hm5C_associated_SNPs_18807 0 0 1 3 73046894 73046915 lncRNA hsa-miR-514b-5p XIST miRanda starBase2
2145 chrX 73046913 73046913 1 - C G CESC 73046894 - 73046874 73046914 41 AGATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAG ACATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAG < 41bp 1 0.433083711487988 1 0.139819502830505 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046894 chrX:73046913 . . 0 2 hm5C_associated_SNPs_18808 0 0 1 3 73046902 73046921 lncRNA hsa-miR-371a-5p XIST miRanda starBase2
2146 chrX 73046913 73046913 1 - C G CESC 73046894 - 73046874 73046914 41 AGATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAG ACATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAG < 41bp 1 0.433083711487988 1 0.139819502830505 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046894 chrX:73046913 . . 0 2 hm5C_associated_SNPs_18808 0 0 1 3 73046894 73046920 lncRNA hsa-miR-513c-5p XIST miRanda starBase2
2147 chrX 73046913 73046913 1 - C G CESC 73046894 - 73046874 73046914 41 AGATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAG ACATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAG < 41bp 1 0.433083711487988 1 0.139819502830505 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046894 chrX:73046913 . . 0 2 hm5C_associated_SNPs_18808 0 0 1 3 73046894 73046915 lncRNA hsa-miR-514b-5p XIST miRanda starBase2
2148 chrX 73046913 73046913 1 - C G CESC 73046915 - 73046895 73046935 41 AGAAGGCCCAAAGTATAAGACAGATGGTTTGAGACTTGAGA AGAAGGCCCAAAGTATAAGACACATGGTTTGAGACTTGAGA < 41bp 1 0.128056206943049 1 0.118196040391922 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046915 chrX:73046913 . . 0 23 hm5C_associated_SNPs_18809 0 0 1 3 73046902 73046921 lncRNA hsa-miR-371a-5p XIST miRanda starBase2
2149 chrX 73046913 73046913 1 - C G CESC 73046915 - 73046895 73046935 41 AGAAGGCCCAAAGTATAAGACAGATGGTTTGAGACTTGAGA AGAAGGCCCAAAGTATAAGACACATGGTTTGAGACTTGAGA < 41bp 1 0.128056206943049 1 0.118196040391922 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046915 chrX:73046913 . . 0 23 hm5C_associated_SNPs_18809 0 0 1 3 73046894 73046920 lncRNA hsa-miR-513c-5p XIST miRanda starBase2
2150 chrX 73046913 73046913 1 - C G CESC 73046915 - 73046895 73046935 41 AGAAGGCCCAAAGTATAAGACAGATGGTTTGAGACTTGAGA AGAAGGCCCAAAGTATAAGACACATGGTTTGAGACTTGAGA < 41bp 1 0.128056206943049 1 0.118196040391922 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046915 chrX:73046913 . . 0 23 hm5C_associated_SNPs_18809 0 0 1 3 73046894 73046915 lncRNA hsa-miR-514b-5p XIST miRanda starBase2
2151 chr6 142519611 142519611 1 + C T CESC 142519603 + 142519583 142519623 41 AGAAAATGAAGATGCTGGAGCAGCCTCTCTGCCCACTCAGC AGAAAATGAAGATGCTGGAGCAGCCTCTTTGCCCACTCAGC < 41bp 1 0.307723065082631 1 0.215969890356064 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VTA1 ENSG00000009844 CDS Human protein_coding chr6:142519603 chr6:142519611 synonymous SNV . 0 29 hm5C_associated_SNPs_18823 0 0 1 1 142519595 142519616 mRNA hsa-miR-31 VTA1 miRanda miRanda
2152 chrX 73046776 73046776 1 - C T CESC 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCGAAGGCCTAAGTTGGATGGAAGTCTC < 41bp 1 0.176544666559504 1 0.621666371822357 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046776 . . 0 24 hm5C_associated_SNPs_18929 0 0 1 3 73046776 73046796 lncRNA hsa-miR-1245b-5p XIST miRanda starBase2
2153 chrX 73046776 73046776 1 - C T CESC 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCGAAGGCCTAAGTTGGATGGAAGTCTC < 41bp 1 0.176544666559504 1 0.621666371822357 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046776 . . 0 24 hm5C_associated_SNPs_18929 0 0 1 3 73046776 73046797 lncRNA hsa-miR-3142 XIST miRanda starBase2
2154 chrX 73046776 73046776 1 - C T CESC 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCGAAGGCCTAAGTTGGATGGAAGTCTC < 41bp 1 0.176544666559504 1 0.621666371822357 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046776 . . 0 24 hm5C_associated_SNPs_18929 0 0 1 3 73046772 73046795 lncRNA hsa-miR-510-5p XIST miRanda starBase2
2155 chrX 73046776 73046776 1 - C T CESC 73046786 - 73046766 73046806 41 AGAGGGTGGCCTGAATTGGACCGAAGGCCTGAGTTGGATGG AGAGGGTGGCCTGAATTGGACCGAAGGCCTAAGTTGGATGG < 41bp 1 0.369674782234892 1 0.159264743328094 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046786 chrX:73046776 . . 0 31 hm5C_associated_SNPs_18930 0 0 1 3 73046776 73046796 lncRNA hsa-miR-1245b-5p XIST miRanda starBase2
2156 chrX 73046776 73046776 1 - C T CESC 73046786 - 73046766 73046806 41 AGAGGGTGGCCTGAATTGGACCGAAGGCCTGAGTTGGATGG AGAGGGTGGCCTGAATTGGACCGAAGGCCTAAGTTGGATGG < 41bp 1 0.369674782234892 1 0.159264743328094 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046786 chrX:73046776 . . 0 31 hm5C_associated_SNPs_18930 0 0 1 3 73046776 73046797 lncRNA hsa-miR-3142 XIST miRanda starBase2
2157 chrX 73046776 73046776 1 - C T CESC 73046786 - 73046766 73046806 41 AGAGGGTGGCCTGAATTGGACCGAAGGCCTGAGTTGGATGG AGAGGGTGGCCTGAATTGGACCGAAGGCCTAAGTTGGATGG < 41bp 1 0.369674782234892 1 0.159264743328094 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046786 chrX:73046776 . . 0 31 hm5C_associated_SNPs_18930 0 0 1 3 73046772 73046795 lncRNA hsa-miR-510-5p XIST miRanda starBase2
2158 chrX 48759680 48759680 1 + C A CESC 48759667 + 48759647 48759687 41 CGTGGCTATGACAAGGTAGACAGAGAGAGAGAGCGAGACAG CGTGGCTATGACAAGGTAGACAGAGAGAGAGAGAGAGACAG < 41bp 1 0.768358098820279 1 0.63315623998642 experiment 0.463283802359443 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759667 chrX:48759680 synonymous SNV . 0 34 hm5C_associated_SNPs_18933 0 0 1 1 48759669 48759690 mRNA hsa-miR-339-5p PQBP1 miRanda miRanda
2159 chr15 91456130 91456130 1 + C T CESC 91456118 + 91456098 91456138 41 TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCCGTGCTGCG TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCTGTGCTGCG < 41bp 1 0.646862779985419 1 0.886131763458252 experiment 0.706274440029163 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91456118 chr15:91456130 synonymous SNV . 0 33 hm5C_associated_SNPs_19028 0 0 1 1 91456127 91456147 mRNA hsa-miR-152 MAN2A2 miRanda miRanda
2160 chr11 68846030 68846030 1 + G T COAD 68846028 + 68846008 68846048 41 GCCACTACTACTTTGACTACCTGGGGAACCTCATCGCCCTG GCCACTACTACTTTGACTACCTTGGGAACCTCATCGCCCTG < 41bp 1 0.480260768763777 1 0.230260998010635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68846028 chr11:68846030 synonymous SNV . 0 23 hm5C_associated_SNPs_19068 0 0 1 2 68846010 68846030 mRNA hsa-miR-196a TPCN2 miRanda miRanda
2161 chr11 68846030 68846030 1 + G T COAD 68846028 + 68846008 68846048 41 GCCACTACTACTTTGACTACCTGGGGAACCTCATCGCCCTG GCCACTACTACTTTGACTACCTTGGGAACCTCATCGCCCTG < 41bp 1 0.480260768763777 1 0.230260998010635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68846028 chr11:68846030 synonymous SNV . 0 23 hm5C_associated_SNPs_19068 0 0 1 2 68846010 68846030 mRNA hsa-miR-196b TPCN2 miRanda miRanda
2162 chr2 37475354 37475354 1 + A C COAD 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATCCAACGAAGATGGGAGAGAGA < 41bp 1 0.10888559822759 1 0.325759053230286 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475354 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_19115 0 0 1 3 37475334 37475356 mRNA hsa-miR-9 C2orf56 miRanda miRanda
2163 chr2 37475354 37475354 1 + A C COAD 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATCCAACGAAGATGGGAGAGAGA < 41bp 1 0.10888559822759 1 0.325759053230286 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475354 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_19115 0 0 1 3 37475345 37475366 mRNA hsa-miR-150 C2orf56 miRanda miRanda
2164 chr2 37475354 37475354 1 + A C COAD 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATCCAACGAAGATGGGAGAGAGA < 41bp 1 0.10888559822759 1 0.325759053230286 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475354 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_19115 0 0 1 3 37475352 37475373 mRNA hsa-miR-216b C2orf56 miRanda miRanda
2165 chr2 37475354 37475354 1 + A C COAD 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATCCAACGAAGATGGGAGAGAGAT < 41bp 1 0.475908014237201 1 0.248678803443909 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475354 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_19116 0 0 1 3 37475334 37475356 mRNA hsa-miR-9 C2orf56 miRanda miRanda
2166 chr2 37475354 37475354 1 + A C COAD 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATCCAACGAAGATGGGAGAGAGAT < 41bp 1 0.475908014237201 1 0.248678803443909 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475354 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_19116 0 0 1 3 37475345 37475366 mRNA hsa-miR-150 C2orf56 miRanda miRanda
2167 chr2 37475354 37475354 1 + A C COAD 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATCCAACGAAGATGGGAGAGAGAT < 41bp 1 0.475908014237201 1 0.248678803443909 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475354 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_19116 0 0 1 3 37475352 37475373 mRNA hsa-miR-216b C2orf56 miRanda miRanda
2168 chr9 134064461 134064461 1 + A G COAD 134064468 + 134064448 134064488 41 AATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCCG AATAAATTCCCTTGAGCCATCTGGGCCTACACCAGCATCCG < 41bp 1 0.588606127793228 1 0.739716470241547 experiment 0.822787744413544 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134064468 chr9:134064461 nonsynonymous SNV 0.931 3 14 hm5C_associated_SNPs_19146 0 0 1 2 134064446 134064468 mRNA hsa-miR-135a NUP214 miRanda miRanda
2169 chr9 134064461 134064461 1 + A G COAD 134064468 + 134064448 134064488 41 AATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCCG AATAAATTCCCTTGAGCCATCTGGGCCTACACCAGCATCCG < 41bp 1 0.588606127793228 1 0.739716470241547 experiment 0.822787744413544 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134064468 chr9:134064461 nonsynonymous SNV 0.931 3 14 hm5C_associated_SNPs_19146 0 0 1 2 134064446 134064468 mRNA hsa-miR-135b NUP214 miRanda miRanda
2170 chr15 63866324 63866324 1 + G A COAD 63866342 + 63866322 63866362 41 CAGAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT CAAAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT < 41bp 1 0.016054118645578 1 0.0899722576141357 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP3 ENSG00000140455 CDS Human protein_coding chr15:63866342 chr15:63866324 nonsynonymous SNV 0.999 2 3 hm5C_associated_SNPs_19158 0 0 1 1 63866323 63866342 mRNA hsa-miR-371-5p USP3 miRanda miRanda
2171 chr14 24569454 24569454 1 + T C COAD 24569453 + 24569433 24569473 41 TGGGGAAGGTGTGGCACAGCCTCCAGGCCTCAGCACCTTAA TGGGGAAGGTGTGGCACAGCCCCCAGGCCTCAGCACCTTAA < 41bp 1 0.633841069764543 1 0.64246529340744 experiment 0.732317860470914 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout PCK2 ENSG00000100889 CDS Human protein_coding chr14:24569453 chr14:24569454 synonymous SNV . 0 22 hm5C_associated_SNPs_19170 0 0 1 2 24569450 24569472 mRNA hsa-miR-18a PCK2 miRanda miRanda
2172 chr14 24569454 24569454 1 + T C COAD 24569453 + 24569433 24569473 41 TGGGGAAGGTGTGGCACAGCCTCCAGGCCTCAGCACCTTAA TGGGGAAGGTGTGGCACAGCCCCCAGGCCTCAGCACCTTAA < 41bp 1 0.633841069764543 1 0.64246529340744 experiment 0.732317860470914 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout PCK2 ENSG00000100889 CDS Human protein_coding chr14:24569453 chr14:24569454 synonymous SNV . 0 22 hm5C_associated_SNPs_19170 0 0 1 2 24569450 24569472 mRNA hsa-miR-18b PCK2 miRanda miRanda
2173 chr19 58290959 58290959 1 + A G COAD 58290970 + 58290950 58290990 41 TTATTATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT TTATTATACGTCTGAGAGTTCACACTGGAGAAAGGCCTTAT < 41bp 1 0.242324889598912 1 0.055432140827179 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58290970 chr19:58290959 nonsynonymous SNV 0.018 4 10 hm5C_associated_SNPs_19275 0 0 1 3 58290955 58290978 mRNA hsa-miR-199a-5p ZNF586 miRanda miRanda
2174 chr19 58290959 58290959 1 + A G COAD 58290970 + 58290950 58290990 41 TTATTATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT TTATTATACGTCTGAGAGTTCACACTGGAGAAAGGCCTTAT < 41bp 1 0.242324889598912 1 0.055432140827179 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58290970 chr19:58290959 nonsynonymous SNV 0.018 4 10 hm5C_associated_SNPs_19275 0 0 1 3 58290958 58290978 mRNA hsa-miR-199b-5p ZNF586 miRanda miRanda
2175 chr19 58290959 58290959 1 + A G COAD 58290970 + 58290950 58290990 41 TTATTATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT TTATTATACGTCTGAGAGTTCACACTGGAGAAAGGCCTTAT < 41bp 1 0.242324889598912 1 0.055432140827179 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58290970 chr19:58290959 nonsynonymous SNV 0.018 4 10 hm5C_associated_SNPs_19275 0 0 1 3 58290956 58290977 mRNA hsa-miR-125a-3p ZNF586 miRanda miRanda
2176 chr11 107917094 107917094 1 + G A COAD 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTAAGCAAGCACAGACAGTAAGTTCTACATGC < 41bp 1 0.223632520608126 1 0.2604740858078 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917094 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_19301 0 0 1 1 107917089 107917096 mRNA hsa-miR-24 CUL5 miRanda miRanda
2177 chr1 53420447 53420447 1 + A G COAD 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGGAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.394704023480897 1 0.179698199033737 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420447 nonsynonymous SNV 0.999 3 3 hm5C_associated_SNPs_19337 0 0 1 1 53420428 53420447 mRNA hsa-miR-371-5p SCP2 miRanda miRanda
2178 chr11 107917076 107917076 1 + T C COAD 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGCTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC < 41bp 1 0.421888566805512 1 0.399980247020721 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917076 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_19349 0 0 1 1 107917074 107917093 mRNA hsa-miR-218 CUL5 miRanda miRanda
2179 chr1 27630278 27630278 1 + C A COAD 27630272 + 27630252 27630292 41 ACCACGGATATCAAAGAGGCCAATTTCTTTGGCAGGTCCGA ACCACGGATATCAAAGAGGCCAATTTATTTGGCAGGTCCGA < 41bp 1 0.0639708565971758 1 0.148474901914597 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27630272 chr1:27630278 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_19432 0 0 0 1 27630260 27630282 mRNA hsa-miR-186 WDTC1 miRanda miRanda
2180 chr2 170804118 170804118 1 + A T COAD 170804126 + 170804106 170804146 41 TTAGTGTCAAACATGCGACACTTTATAAACTATGTTAGAGT TTAGTGTCAAACTTGCGACACTTTATAAACTATGTTAGAGT < 41bp 1 0.0730556047090031 1 0.0820217132568359 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR3 ENSG00000144357 CDS Human protein_coding chr2:170804126 chr2:170804118 nonsynonymous SNV 0.999 0 13 hm5C_associated_SNPs_19475 0 0 0 1 170804112 170804133 mRNA hsa-miR-340 UBR3 miRanda miRanda
2181 chr12 110456190 110456190 1 + C T COAD 110456173 + 110456153 110456193 41 CCTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATC CCTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGTATC < 41bp 1 0.380719438618989 1 0.605301380157471 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456173 chr12:110456190 synonymous SNV . 0 38 hm5C_associated_SNPs_19518 0 0 1 1 110456190 110456211 mRNA hsa-miR-1271 ANKRD13A miRanda miRanda
2182 chr12 110456190 110456190 1 + C T COAD 110456174 + 110456154 110456194 41 CTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATCT CTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGTATCT < 41bp 1 0.311366857362149 1 0.151655048131943 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456174 chr12:110456190 synonymous SNV . 0 37 hm5C_associated_SNPs_19519 0 0 1 1 110456190 110456211 mRNA hsa-miR-1271 ANKRD13A miRanda miRanda
2183 chrX 73047072 73047072 1 - C T COAD 73047076 - 73047056 73047096 41 CCTGCCTGATAGGTGCAGAACGTCGGCTATCAGAGCAAGCA CCTGCCTGATAGGTGCAGAACGTCAGCTATCAGAGCAAGCA < 41bp 1 0.377831448917424 1 0.135126084089279 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047076 chrX:73047072 . . 0 25 hm5C_associated_SNPs_19553 0 0 1 2 73047059 73047080 lncRNA hsa-miR-5691 XIST miRanda starBase2
2184 chrX 73047072 73047072 1 - C T COAD 73047076 - 73047056 73047096 41 CCTGCCTGATAGGTGCAGAACGTCGGCTATCAGAGCAAGCA CCTGCCTGATAGGTGCAGAACGTCAGCTATCAGAGCAAGCA < 41bp 1 0.377831448917424 1 0.135126084089279 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047076 chrX:73047072 . . 0 25 hm5C_associated_SNPs_19553 0 0 1 2 73047059 73047081 lncRNA hsa-miR-6805-3p XIST miRanda starBase2
2185 chr6 158449875 158449875 1 + C G COAD 158449888 + 158449868 158449908 41 ATCACTGCCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA ATCACTGGCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA < 41bp 1 0.0628654771223201 1 0.0402891337871552 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158449888 chr6:158449875 nonsynonymous SNV 0.201 0 8 hm5C_associated_SNPs_19617 0 0 1 4 158449856 158449877 mRNA hsa-miR-34a SYNJ2 miRanda miRanda
2186 chr6 158449875 158449875 1 + C G COAD 158449888 + 158449868 158449908 41 ATCACTGCCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA ATCACTGGCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA < 41bp 1 0.0628654771223201 1 0.0402891337871552 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158449888 chr6:158449875 nonsynonymous SNV 0.201 0 8 hm5C_associated_SNPs_19617 0 0 1 4 158449856 158449877 mRNA hsa-miR-34c-5p SYNJ2 miRanda miRanda
2187 chr6 158449875 158449875 1 + C G COAD 158449888 + 158449868 158449908 41 ATCACTGCCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA ATCACTGGCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA < 41bp 1 0.0628654771223201 1 0.0402891337871552 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158449888 chr6:158449875 nonsynonymous SNV 0.201 0 8 hm5C_associated_SNPs_19617 0 0 1 4 158449856 158449877 mRNA hsa-miR-449a SYNJ2 miRanda miRanda
2188 chr6 158449875 158449875 1 + C G COAD 158449888 + 158449868 158449908 41 ATCACTGCCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA ATCACTGGCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA < 41bp 1 0.0628654771223201 1 0.0402891337871552 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158449888 chr6:158449875 nonsynonymous SNV 0.201 0 8 hm5C_associated_SNPs_19617 0 0 1 4 158449856 158449877 mRNA hsa-miR-449b SYNJ2 miRanda miRanda
2189 chr8 41355101 41355101 1 + G A COAD 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGACCAGTCATATCTCGAAGGTTGT < 41bp 1 0.168173102639989 1 0.188007533550262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355101 nonsynonymous SNV 0.968 1 19 hm5C_associated_SNPs_19670 0 0 1 2 41355086 41355107 mRNA hsa-miR-193a-3p GOLGA7 miRanda miRanda
2190 chr8 41355101 41355101 1 + G A COAD 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGACCAGTCATATCTCGAAGGTTGT < 41bp 1 0.168173102639989 1 0.188007533550262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355101 nonsynonymous SNV 0.968 1 19 hm5C_associated_SNPs_19670 0 0 1 2 41355086 41355107 mRNA hsa-miR-193b GOLGA7 miRanda miRanda
2191 chr13 31903690 31903690 1 + C T COAD 31903694 + 31903674 31903714 41 CATCAAGTTCCCATATCGTTCCACAAACACTGGAACATCGA CATCAAGTTCCCATATTGTTCCACAAACACTGGAACATCGA < 41bp 1 0.428641577292033 1 0.129657834768295 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31903694 chr13:31903690 nonsynonymous SNV 0.927 4 17 hm5C_associated_SNPs_19673 0 0 0 2 31903685 31903707 mRNA hsa-miR-199a-5p B3GALTL miRanda miRanda
2192 chr13 31903690 31903690 1 + C T COAD 31903694 + 31903674 31903714 41 CATCAAGTTCCCATATCGTTCCACAAACACTGGAACATCGA CATCAAGTTCCCATATTGTTCCACAAACACTGGAACATCGA < 41bp 1 0.428641577292033 1 0.129657834768295 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31903694 chr13:31903690 nonsynonymous SNV 0.927 4 17 hm5C_associated_SNPs_19673 0 0 0 2 31903682 31903707 mRNA hsa-miR-199b-5p B3GALTL miRanda miRanda
2193 chr8 107752665 107752665 1 + G A COAD 107752684 + 107752664 107752704 41 CGAACAATGACAGGTTTAGACACCCCAGTGCTGATGGTGAT CAAACAATGACAGGTTTAGACACCCCAGTGCTGATGGTGAT < 41bp 1 0.333522924229847 1 0.182835131883621 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107752684 chr8:107752665 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_19754 0 0 1 1 107752650 107752671 mRNA hsa-miR-375 OXR1 miRanda miRanda
2194 chr12 13232900 13232900 1 + G A COAD 13232896 + 13232876 13232916 41 CCAAAATTGGCCGTGGGGAGCTGCGAAGATTTCTCTCTAGG CCAAAATTGGCCGTGGGGAGCTGCAAAGATTTCTCTCTAGG < 41bp 1 0.66996269731816 1 0.285153120756149 experiment 0.66007460536368 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232896 chr12:13232900 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_19762 0 0 1 1 13232890 13232911 mRNA hsa-miR-539 KIAA1467 miRanda miRanda
2195 chr9 131455942 131455942 1 + C T COAD 131455929 + 131455909 131455949 41 TCATTTAGGATTTGACGAAACGTTCGAGTCAAACGCAGAAT TCATTTAGGATTTGACGAAACGTTCGAGTCAAATGCAGAAT < 41bp 1 0.111549179623361 1 0.0575315058231354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455929 chr9:131455942 nonsynonymous SNV 0.998 1 34 hm5C_associated_SNPs_19768 0 0 1 1 131455942 131455962 mRNA hsa-miR-370 SET miRanda miRanda
2196 chr12 107237706 107237706 1 + G A COAD 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCCCATCGAAACATCCAAAAATTTCTCAAAGA < 41bp 1 0.128671473970378 1 0.221647083759308 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237706 nonsynonymous SNV 0.993 4 26 hm5C_associated_SNPs_19789 0 0 0 1 107237698 107237717 mRNA hsa-miR-539 RIC8B miRanda miRanda
2197 chr7 65610471 65610471 1 + C T COAD 65610481 + 65610461 65610501 41 CCTGTGACTGCTGTGGAGATCCAGCTGGTGAGTGAAGGGCG CCTGTGACTGTTGTGGAGATCCAGCTGGTGAGTGAAGGGCG < 41bp 1 0.576697146955096 1 0.432409405708313 experiment 0.846605706089808 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CRCP ENSG00000241258;ENSG00000249319 CDS Human other chr7:65610481 chr7:65610471 nonsynonymous SNV 0.972 3 11 hm5C_associated_SNPs_19800 0 0 1 3 65610451 65610473 mRNA hsa-miR-15a CRCP miRanda miRanda
2198 chr7 65610471 65610471 1 + C T COAD 65610481 + 65610461 65610501 41 CCTGTGACTGCTGTGGAGATCCAGCTGGTGAGTGAAGGGCG CCTGTGACTGTTGTGGAGATCCAGCTGGTGAGTGAAGGGCG < 41bp 1 0.576697146955096 1 0.432409405708313 experiment 0.846605706089808 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CRCP ENSG00000241258;ENSG00000249319 CDS Human other chr7:65610481 chr7:65610471 nonsynonymous SNV 0.972 3 11 hm5C_associated_SNPs_19800 0 0 1 3 65610448 65610473 mRNA hsa-miR-15b CRCP miRanda miRanda
2199 chr7 65610471 65610471 1 + C T COAD 65610481 + 65610461 65610501 41 CCTGTGACTGCTGTGGAGATCCAGCTGGTGAGTGAAGGGCG CCTGTGACTGTTGTGGAGATCCAGCTGGTGAGTGAAGGGCG < 41bp 1 0.576697146955096 1 0.432409405708313 experiment 0.846605706089808 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CRCP ENSG00000241258;ENSG00000249319 CDS Human other chr7:65610481 chr7:65610471 nonsynonymous SNV 0.972 3 11 hm5C_associated_SNPs_19800 0 0 1 3 65610449 65610473 mRNA hsa-miR-497 CRCP miRanda miRanda
2200 chrX 153008757 153008757 1 + G A COAD 153008774 + 153008754 153008794 41 GACGCGGGCATTGCCCTGCTCTCCATCACCCACCGGCCCTC GACACGGGCATTGCCCTGCTCTCCATCACCCACCGGCCCTC < 41bp 1 0.77668065161402 1 0.919561743736267 experiment 0.44663869677196 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153008774 chrX:153008757 nonsynonymous SNV 0.816 2 4 hm5C_associated_SNPs_19886 0 0 1 1 153008745 153008766 mRNA hsa-miR-365 ABCD1 miRanda miRanda
2201 chr2 197541360 197541360 1 + C T COAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAGCTGTTAGAATCAACTATTGCA < 41bp 1 0.136921294804079 1 0.0728147923946381 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541360 synonymous SNV . 0 24 hm5C_associated_SNPs_19940 0 0 1 7 197541341 197541362 mRNA hsa-miR-15a CCDC150 miRanda miRanda
2202 chr2 197541360 197541360 1 + C T COAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAGCTGTTAGAATCAACTATTGCA < 41bp 1 0.136921294804079 1 0.0728147923946381 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541360 synonymous SNV . 0 24 hm5C_associated_SNPs_19940 0 0 1 7 197541341 197541362 mRNA hsa-miR-16 CCDC150 miRanda miRanda
2203 chr2 197541360 197541360 1 + C T COAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAGCTGTTAGAATCAACTATTGCA < 41bp 1 0.136921294804079 1 0.0728147923946381 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541360 synonymous SNV . 0 24 hm5C_associated_SNPs_19940 0 0 1 7 197541341 197541362 mRNA hsa-miR-15b CCDC150 miRanda miRanda
2204 chr2 197541360 197541360 1 + C T COAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAGCTGTTAGAATCAACTATTGCA < 41bp 1 0.136921294804079 1 0.0728147923946381 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541360 synonymous SNV . 0 24 hm5C_associated_SNPs_19940 0 0 1 7 197541342 197541362 mRNA hsa-miR-195 CCDC150 miRanda miRanda
2205 chr2 197541360 197541360 1 + C T COAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAGCTGTTAGAATCAACTATTGCA < 41bp 1 0.136921294804079 1 0.0728147923946381 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541360 synonymous SNV . 0 24 hm5C_associated_SNPs_19940 0 0 1 7 197541341 197541362 mRNA hsa-miR-424 CCDC150 miRanda miRanda
2206 chr2 197541360 197541360 1 + C T COAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAGCTGTTAGAATCAACTATTGCA < 41bp 1 0.136921294804079 1 0.0728147923946381 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541360 synonymous SNV . 0 24 hm5C_associated_SNPs_19940 0 0 1 7 197541340 197541362 mRNA hsa-miR-503 CCDC150 miRanda miRanda
2207 chr2 197541360 197541360 1 + C T COAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAGCTGTTAGAATCAACTATTGCA < 41bp 1 0.136921294804079 1 0.0728147923946381 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541360 synonymous SNV . 0 24 hm5C_associated_SNPs_19940 0 0 1 7 197541340 197541366 mRNA hsa-miR-544 CCDC150 miRanda miRanda
2208 chr15 25220542 25220542 1 + A G COAD 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGGCTATAGA < 41bp 1 0.66043163382841 1 0.526533186435699 experiment 0.67913673234318 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220542 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_20069 0 0 1 3 25220534 25220559 mRNA hsa-miR-181b SNURF miRanda miRanda
2209 chr15 25220542 25220542 1 + A G COAD 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGGCTATAGA < 41bp 1 0.66043163382841 1 0.526533186435699 experiment 0.67913673234318 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220542 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_20069 0 0 1 3 25220537 25220559 mRNA hsa-miR-181c SNURF miRanda miRanda
2210 chr15 25220542 25220542 1 + A G COAD 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGGCTATAGA < 41bp 1 0.66043163382841 1 0.526533186435699 experiment 0.67913673234318 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220542 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_20069 0 0 1 3 25220534 25220559 mRNA hsa-miR-181d SNURF miRanda miRanda
2211 chr11 125513698 125513698 1 + C T COAD 125513690 + 125513670 125513710 41 TTTGTTTTCTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTT TTTGTTTTCTTTTTTAGGGGCAAAAAGGTCCCGAGTCACTT < 41bp 1 0.361374514515325 1 0.222907096147537 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513690 chr11:125513698 nonsynonymous SNV 0.998 0 29 hm5C_associated_SNPs_20075 0 0 1 2 125513687 125513711 mRNA hsa-miR-372 CHEK1 miRanda miRanda
2212 chr11 125513698 125513698 1 + C T COAD 125513690 + 125513670 125513710 41 TTTGTTTTCTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTT TTTGTTTTCTTTTTTAGGGGCAAAAAGGTCCCGAGTCACTT < 41bp 1 0.361374514515325 1 0.222907096147537 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513690 chr11:125513698 nonsynonymous SNV 0.998 0 29 hm5C_associated_SNPs_20075 0 0 1 2 125513687 125513711 mRNA hsa-miR-520e CHEK1 miRanda miRanda
2213 chr11 125513698 125513698 1 + C T COAD 125513699 + 125513679 125513719 41 TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTG TTTTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGTG < 41bp 1 0.734824226130195 1 0.396350800991058 experiment 0.53035154773961 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513699 chr11:125513698 nonsynonymous SNV 0.998 0 20 hm5C_associated_SNPs_20076 0 0 1 2 125513687 125513711 mRNA hsa-miR-372 CHEK1 miRanda miRanda
2214 chr11 125513698 125513698 1 + C T COAD 125513699 + 125513679 125513719 41 TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTG TTTTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGTG < 41bp 1 0.734824226130195 1 0.396350800991058 experiment 0.53035154773961 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513699 chr11:125513698 nonsynonymous SNV 0.998 0 20 hm5C_associated_SNPs_20076 0 0 1 2 125513687 125513711 mRNA hsa-miR-520e CHEK1 miRanda miRanda
2215 chr11 125513698 125513698 1 + C T COAD 125513700 + 125513680 125513720 41 TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGT TTTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGTGT < 41bp 1 0.115764065383215 1 0.228569030761719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513700 chr11:125513698 nonsynonymous SNV 0.998 0 19 hm5C_associated_SNPs_20077 0 0 1 2 125513687 125513711 mRNA hsa-miR-372 CHEK1 miRanda miRanda
2216 chr11 125513698 125513698 1 + C T COAD 125513700 + 125513680 125513720 41 TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGT TTTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGTGT < 41bp 1 0.115764065383215 1 0.228569030761719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513700 chr11:125513698 nonsynonymous SNV 0.998 0 19 hm5C_associated_SNPs_20077 0 0 1 2 125513687 125513711 mRNA hsa-miR-520e CHEK1 miRanda miRanda
2217 chr11 125513698 125513698 1 + C T COAD 125513701 + 125513681 125513721 41 TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTG TTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGTGTG < 41bp 1 0.541165286526444 1 0.527314603328705 experiment 0.917669426947112 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513701 chr11:125513698 nonsynonymous SNV 0.998 0 18 hm5C_associated_SNPs_20078 0 0 1 2 125513687 125513711 mRNA hsa-miR-372 CHEK1 miRanda miRanda
2218 chr11 125513698 125513698 1 + C T COAD 125513701 + 125513681 125513721 41 TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTG TTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGTGTG < 41bp 1 0.541165286526444 1 0.527314603328705 experiment 0.917669426947112 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513701 chr11:125513698 nonsynonymous SNV 0.998 0 18 hm5C_associated_SNPs_20078 0 0 1 2 125513687 125513711 mRNA hsa-miR-520e CHEK1 miRanda miRanda
2219 chr6 42044971 42044971 1 + G T COAD 42044969 + 42044949 42044989 41 GTGAAGAAGCCCAAGATCCGCAGGAAGAAGTGAGTTGGAGG GTGAAGAAGCCCAAGATCCGCATGAAGAAGTGAGTTGGAGG < 41bp 1 0.651562720393714 1 0.325345158576965 experiment 0.696874559212572 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TAF8 ENSG00000137413 CDS Human protein_coding chr6:42044969 chr6:42044971 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_20086 0 0 1 3 42044961 42044977 mRNA hsa-miR-135a TAF8 miRanda miRanda
2220 chr6 42044971 42044971 1 + G T COAD 42044969 + 42044949 42044989 41 GTGAAGAAGCCCAAGATCCGCAGGAAGAAGTGAGTTGGAGG GTGAAGAAGCCCAAGATCCGCATGAAGAAGTGAGTTGGAGG < 41bp 1 0.651562720393714 1 0.325345158576965 experiment 0.696874559212572 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TAF8 ENSG00000137413 CDS Human protein_coding chr6:42044969 chr6:42044971 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_20086 0 0 1 3 42044961 42044977 mRNA hsa-miR-149 TAF8 miRanda miRanda
2221 chr6 42044971 42044971 1 + G T COAD 42044969 + 42044949 42044989 41 GTGAAGAAGCCCAAGATCCGCAGGAAGAAGTGAGTTGGAGG GTGAAGAAGCCCAAGATCCGCATGAAGAAGTGAGTTGGAGG < 41bp 1 0.651562720393714 1 0.325345158576965 experiment 0.696874559212572 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TAF8 ENSG00000137413 CDS Human protein_coding chr6:42044969 chr6:42044971 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_20086 0 0 1 3 42044960 42044977 mRNA hsa-miR-135b TAF8 miRanda miRanda
2222 chr11 6414487 6414487 1 + G A COAD 6414500 + 6414480 6414520 41 GGTCTCCGCCTCATCTCTCTCAATATGAATTTTTGTTCCCG GGTCTCCACCTCATCTCTCTCAATATGAATTTTTGTTCCCG < 41bp 1 0.424806203771086 1 0.647922933101654 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6414500 chr11:6414487 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_20154 0 0 1 1 6414477 6414497 mRNA hsa-miR-143 SMPD1 miRanda miRanda
2223 chr2 127453576 127453576 1 + G A COAD 127453565 + 127453545 127453585 41 GTCCTAGTCTCCCTCCTCTTCGTCATGCTGCGCTACATGTA GTCCTAGTCTCCCTCCTCTTCGTCATGCTGCACTACATGTA < 41bp 1 0.692544252668855 1 0.424920201301575 experiment 0.614911494662289 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control GYPC ENSG00000136732 CDS Human protein_coding chr2:127453565 chr2:127453576 nonsynonymous SNV 0.003 0 32 hm5C_associated_SNPs_20163 0 0 1 2 127453554 127453576 mRNA hsa-miR-103 GYPC miRanda miRanda
2224 chr2 127453576 127453576 1 + G A COAD 127453565 + 127453545 127453585 41 GTCCTAGTCTCCCTCCTCTTCGTCATGCTGCGCTACATGTA GTCCTAGTCTCCCTCCTCTTCGTCATGCTGCACTACATGTA < 41bp 1 0.692544252668855 1 0.424920201301575 experiment 0.614911494662289 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control GYPC ENSG00000136732 CDS Human protein_coding chr2:127453565 chr2:127453576 nonsynonymous SNV 0.003 0 32 hm5C_associated_SNPs_20163 0 0 1 2 127453554 127453576 mRNA hsa-miR-107 GYPC miRanda miRanda
2225 chr5 7889311 7889311 1 + T C COAD 7889293 + 7889273 7889313 41 GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGTAC GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGCAC < 41bp 1 0.224233241508487 1 0.110122352838516 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7889293 chr5:7889311 nonsynonymous SNV 0.002 1 39 hm5C_associated_SNPs_20181 0 0 1 1 7889311 7889332 mRNA hsa-miR-195 MTRR miRanda miRanda
2226 chr7 5644956 5644956 1 + G A COAD 5644976 + 5644956 5644996 41 GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA AGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA < 41bp 1 0.230654783329136 1 0.183800637722015 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5644976 chr7:5644956 nonsynonymous SNV 0.955 0 1 hm5C_associated_SNPs_20202 0 0 1 1 5644945 5644967 mRNA hsa-miR-122 FSCN1 miRanda miRanda
2227 chr2 160087103 160087103 1 + G A COAD 160087089 + 160087069 160087109 41 GCGGTACAGCTGAGCACAGACCCCGCAACACGCCGTTCATG GCGGTACAGCTGAGCACAGACCCCGCAACACGCCATTCATG < 41bp 1 0.22199370886233 1 0.309577465057373 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160087089 chr2:160087103 synonymous SNV . 0 35 hm5C_associated_SNPs_20210 0 0 1 1 160087096 160087118 mRNA hsa-miR-455-5p TANC1 miRanda miRanda
2228 chr1 53420462 53420462 1 + A G COAD 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGAAGATGAGTAAGGGAGGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.307514968564535 1 0.183474898338318 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420462 nonsynonymous SNV 0.004 3 18 hm5C_associated_SNPs_20212 0 0 1 1 53420459 53420476 mRNA hsa-miR-590-3p SCP2 miRanda miRanda
2229 chr6 31593370 31593370 1 + C T COAD 31593350 + 31593330 31593370 41 GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGC GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGT < 41bp 1 0.53681996426197 1 0.255204319953918 experiment 0.92636007147606 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593350 chr6:31593370 synonymous SNV . 0 41 hm5C_associated_SNPs_20229 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
2230 chr6 31593370 31593370 1 + C T COAD 31593351 + 31593331 31593371 41 GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGTG < 41bp 1 0.386938764480967 1 0.0896115005016327 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593351 chr6:31593370 synonymous SNV . 0 40 hm5C_associated_SNPs_20230 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
2231 chr6 31593370 31593370 1 + C T COAD 31593352 + 31593332 31593372 41 CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGTGG < 41bp 1 0.343746388630413 1 0.101510733366013 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593352 chr6:31593370 synonymous SNV . 0 39 hm5C_associated_SNPs_20231 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
2232 chr6 31593370 31593370 1 + C T COAD 31593353 + 31593333 31593373 41 TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGTGGA < 41bp 1 0.289890815152502 1 0.327859133481979 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593353 chr6:31593370 synonymous SNV . 0 38 hm5C_associated_SNPs_20232 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
2233 chr6 31593370 31593370 1 + C T COAD 31593388 + 31593368 31593408 41 CGCGGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC CGTGGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC < 41bp 1 0.667985829078255 1 0.736867547035217 experiment 0.66402834184349 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593388 chr6:31593370 synonymous SNV . 0 3 hm5C_associated_SNPs_20233 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
2234 chr7 77214878 77214878 1 + C T COAD 77214877 + 77214857 77214897 41 TAGATCATTGTAATGGCCTGCCGAGAATTTGAGATGGGAAG TAGATCATTGTAATGGCCTGCTGAGAATTTGAGATGGGAAG < 41bp 1 0.274276082835196 1 0.40167498588562 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77214877 chr7:77214878 stopgain 1.000 1 22 hm5C_associated_SNPs_20270 0 0 1 1 77214868 77214893 mRNA hsa-miR-216a PTPN12 miRanda miRanda
2235 chr10 62547923 62547923 1 + A T COAD 62547929 + 62547909 62547949 41 ATGACAAAGGAACAATTAAACTGGCTGATTTTGGCCTTGCC ATGACAAAGGAACATTTAAACTGGCTGATTTTGGCCTTGCC < 41bp 1 0.792435378869003 1 0.209714561700821 experiment 0.415129242261994 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDK1 ENSG00000170312 CDS Human protein_coding chr10:62547929 chr10:62547923 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_20281 0 0 1 1 62547902 62547924 mRNA hsa-miR-375 CDK1 miRanda miRanda
2236 chr2 238944554 238944554 1 + A G COAD 238944540 + 238944520 238944560 41 ATCTTTTGAATTTTGATGATCCACTGAATATTGAAGCTGCA ATCTTTTGAATTTTGATGATCCACTGAATATTGAGGCTGCA < 41bp 1 0.102883303471584 1 0.0441645383834839 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE2F ENSG00000184182;ENSG00000258984 CDS Human other chr2:238944540 chr2:238944554 synonymous SNV . 0 35 hm5C_associated_SNPs_20284 0 0 1 1 238944543 238944564 mRNA hsa-miR-544 UBE2F miRanda miRanda
2237 chr16 72048541 72048541 1 + G A COAD 72048554 + 72048534 72048574 41 GTCTTCCGCCTCCCTGAGGACCAAGCTGTCATTAACAGGTA GTCTTCCACCTCCCTGAGGACCAAGCTGTCATTAACAGGTA < 41bp 1 0.212389666184233 1 0.0471792817115784 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048554 chr16:72048541 nonsynonymous SNV 0.971 5 8 hm5C_associated_SNPs_20476 0 0 1 3 72048519 72048541 mRNA hsa-miR-7 DHODH miRanda miRanda
2238 chr16 72048541 72048541 1 + G A COAD 72048554 + 72048534 72048574 41 GTCTTCCGCCTCCCTGAGGACCAAGCTGTCATTAACAGGTA GTCTTCCACCTCCCTGAGGACCAAGCTGTCATTAACAGGTA < 41bp 1 0.212389666184233 1 0.0471792817115784 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048554 chr16:72048541 nonsynonymous SNV 0.971 5 8 hm5C_associated_SNPs_20476 0 0 1 3 72048537 72048558 mRNA hsa-miR-133a DHODH miRanda miRanda
2239 chr16 72048541 72048541 1 + G A COAD 72048554 + 72048534 72048574 41 GTCTTCCGCCTCCCTGAGGACCAAGCTGTCATTAACAGGTA GTCTTCCACCTCCCTGAGGACCAAGCTGTCATTAACAGGTA < 41bp 1 0.212389666184233 1 0.0471792817115784 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048554 chr16:72048541 nonsynonymous SNV 0.971 5 8 hm5C_associated_SNPs_20476 0 0 1 3 72048537 72048558 mRNA hsa-miR-133b DHODH miRanda miRanda
2240 chr16 72048541 72048541 1 + G A COAD 72048555 + 72048535 72048575 41 TCTTCCGCCTCCCTGAGGACCAAGCTGTCATTAACAGGTAG TCTTCCACCTCCCTGAGGACCAAGCTGTCATTAACAGGTAG < 41bp 1 0.417208767885187 1 0.361894905567169 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048555 chr16:72048541 nonsynonymous SNV 0.971 5 7 hm5C_associated_SNPs_20477 0 0 1 3 72048519 72048541 mRNA hsa-miR-7 DHODH miRanda miRanda
2241 chr16 72048541 72048541 1 + G A COAD 72048555 + 72048535 72048575 41 TCTTCCGCCTCCCTGAGGACCAAGCTGTCATTAACAGGTAG TCTTCCACCTCCCTGAGGACCAAGCTGTCATTAACAGGTAG < 41bp 1 0.417208767885187 1 0.361894905567169 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048555 chr16:72048541 nonsynonymous SNV 0.971 5 7 hm5C_associated_SNPs_20477 0 0 1 3 72048537 72048558 mRNA hsa-miR-133a DHODH miRanda miRanda
2242 chr16 72048541 72048541 1 + G A COAD 72048555 + 72048535 72048575 41 TCTTCCGCCTCCCTGAGGACCAAGCTGTCATTAACAGGTAG TCTTCCACCTCCCTGAGGACCAAGCTGTCATTAACAGGTAG < 41bp 1 0.417208767885187 1 0.361894905567169 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048555 chr16:72048541 nonsynonymous SNV 0.971 5 7 hm5C_associated_SNPs_20477 0 0 1 3 72048537 72048558 mRNA hsa-miR-133b DHODH miRanda miRanda
2243 chr16 72048541 72048541 1 + G A COAD 72048559 + 72048539 72048579 41 CCGCCTCCCTGAGGACCAAGCTGTCATTAACAGGTAGGTGA CCACCTCCCTGAGGACCAAGCTGTCATTAACAGGTAGGTGA < 41bp 1 0.263632984898471 1 0.0613999962806702 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048559 chr16:72048541 nonsynonymous SNV 0.971 5 3 hm5C_associated_SNPs_20478 0 0 1 3 72048519 72048541 mRNA hsa-miR-7 DHODH miRanda miRanda
2244 chr16 72048541 72048541 1 + G A COAD 72048559 + 72048539 72048579 41 CCGCCTCCCTGAGGACCAAGCTGTCATTAACAGGTAGGTGA CCACCTCCCTGAGGACCAAGCTGTCATTAACAGGTAGGTGA < 41bp 1 0.263632984898471 1 0.0613999962806702 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048559 chr16:72048541 nonsynonymous SNV 0.971 5 3 hm5C_associated_SNPs_20478 0 0 1 3 72048537 72048558 mRNA hsa-miR-133a DHODH miRanda miRanda
2245 chr16 72048541 72048541 1 + G A COAD 72048559 + 72048539 72048579 41 CCGCCTCCCTGAGGACCAAGCTGTCATTAACAGGTAGGTGA CCACCTCCCTGAGGACCAAGCTGTCATTAACAGGTAGGTGA < 41bp 1 0.263632984898471 1 0.0613999962806702 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048559 chr16:72048541 nonsynonymous SNV 0.971 5 3 hm5C_associated_SNPs_20478 0 0 1 3 72048537 72048558 mRNA hsa-miR-133b DHODH miRanda miRanda
2246 chr15 25213177 25213177 1 + G C COAD 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGAGACACCAAGAGCTGGTTAAAGCCATA < 41bp 1 0.778622662256221 1 0.493186950683594 experiment 0.442754675487558 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213177 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_20546 0 0 0 2 25213167 25213191 mRNA hsa-miR-135a SNRPN miRanda miRanda
2247 chr15 25213177 25213177 1 + G C COAD 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGAGACACCAAGAGCTGGTTAAAGCCATA < 41bp 1 0.778622662256221 1 0.493186950683594 experiment 0.442754675487558 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213177 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_20546 0 0 0 2 25213167 25213191 mRNA hsa-miR-135b SNRPN miRanda miRanda
2248 chr17 72306157 72306157 1 + T C COAD 72306164 + 72306144 72306184 41 CCCCTTCAATAGGTGTGTGACGAGGCCCTCTTCTGCCTCCG CCCCTTCAATAGGCGTGTGACGAGGCCCTCTTCTGCCTCCG < 41bp 1 0.780694722287354 1 0.867522418498993 experiment 0.438610555425291 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306164 chr17:72306157 nonsynonymous SNV 0.975 4 14 hm5C_associated_SNPs_20567 0 0 0 4 72306156 72306164 mRNA hsa-miR-197 DNAI2 miRanda miRanda
2249 chr17 72306157 72306157 1 + T C COAD 72306164 + 72306144 72306184 41 CCCCTTCAATAGGTGTGTGACGAGGCCCTCTTCTGCCTCCG CCCCTTCAATAGGCGTGTGACGAGGCCCTCTTCTGCCTCCG < 41bp 1 0.780694722287354 1 0.867522418498993 experiment 0.438610555425291 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306164 chr17:72306157 nonsynonymous SNV 0.975 4 14 hm5C_associated_SNPs_20567 0 0 0 4 72306156 72306162 mRNA hsa-miR-362-3p DNAI2 miRanda miRanda
2250 chr17 72306157 72306157 1 + T C COAD 72306164 + 72306144 72306184 41 CCCCTTCAATAGGTGTGTGACGAGGCCCTCTTCTGCCTCCG CCCCTTCAATAGGCGTGTGACGAGGCCCTCTTCTGCCTCCG < 41bp 1 0.780694722287354 1 0.867522418498993 experiment 0.438610555425291 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306164 chr17:72306157 nonsynonymous SNV 0.975 4 14 hm5C_associated_SNPs_20567 0 0 0 4 72306156 72306162 mRNA hsa-miR-329 DNAI2 miRanda miRanda
2251 chr17 72306157 72306157 1 + T C COAD 72306164 + 72306144 72306184 41 CCCCTTCAATAGGTGTGTGACGAGGCCCTCTTCTGCCTCCG CCCCTTCAATAGGCGTGTGACGAGGCCCTCTTCTGCCTCCG < 41bp 1 0.780694722287354 1 0.867522418498993 experiment 0.438610555425291 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306164 chr17:72306157 nonsynonymous SNV 0.975 4 14 hm5C_associated_SNPs_20567 0 0 0 4 72306156 72306165 mRNA hsa-miR-505 DNAI2 miRanda miRanda
2252 chr5 52177801 52177801 1 + G A COAD 52177818 + 52177798 52177838 41 ATAGTCCAGAGAGGTGGCCGCCAGACTATGACAGCTCTTGG ATAATCCAGAGAGGTGGCCGCCAGACTATGACAGCTCTTGG < 41bp 1 0.342201785072218 1 0.388006120920181 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52177818 chr5:52177801 nonsynonymous SNV 0.973 1 4 hm5C_associated_SNPs_20618 0 0 0 2 52177787 52177807 mRNA hsa-miR-378 ITGA1 miRanda miRanda
2253 chr5 52177801 52177801 1 + G A COAD 52177818 + 52177798 52177838 41 ATAGTCCAGAGAGGTGGCCGCCAGACTATGACAGCTCTTGG ATAATCCAGAGAGGTGGCCGCCAGACTATGACAGCTCTTGG < 41bp 1 0.342201785072218 1 0.388006120920181 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52177818 chr5:52177801 nonsynonymous SNV 0.973 1 4 hm5C_associated_SNPs_20618 0 0 0 2 52177786 52177807 mRNA hsa-miR-422a ITGA1 miRanda miRanda
2254 chr12 54675966 54675966 1 + T G COAD 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAGAGATTAGTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.6187379450155 1 0.362755805253983 experiment 0.762524109968999 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675966 stopgain 1.000 1 14 hm5C_associated_SNPs_20659 0 0 0 3 54675960 54675980 mRNA hsa-miR-200b HNRNPA1 miRanda miRanda
2255 chr12 54675966 54675966 1 + T G COAD 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAGAGATTAGTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.6187379450155 1 0.362755805253983 experiment 0.762524109968999 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675966 stopgain 1.000 1 14 hm5C_associated_SNPs_20659 0 0 0 3 54675956 54675980 mRNA hsa-miR-200c HNRNPA1 miRanda miRanda
2256 chr12 54675966 54675966 1 + T G COAD 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAGAGATTAGTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.6187379450155 1 0.362755805253983 experiment 0.762524109968999 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675966 stopgain 1.000 1 14 hm5C_associated_SNPs_20659 0 0 0 3 54675959 54675980 mRNA hsa-miR-429 HNRNPA1 miRanda miRanda
2257 chr19 42814474 42814474 1 + G T COAD 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATATCCCTGATCAAGTCCCAGAGCA < 41bp 1 0.226563105801351 1 0.179033696651459 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814474 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_20694 0 0 0 3 42814473 42814492 mRNA hsa-miR-378 PRR19 miRanda miRanda
2258 chr19 42814474 42814474 1 + G T COAD 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATATCCCTGATCAAGTCCCAGAGCA < 41bp 1 0.226563105801351 1 0.179033696651459 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814474 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_20694 0 0 0 3 42814473 42814494 mRNA hsa-miR-330-5p PRR19 miRanda miRanda
2259 chr19 42814474 42814474 1 + G T COAD 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATATCCCTGATCAAGTCCCAGAGCA < 41bp 1 0.226563105801351 1 0.179033696651459 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814474 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_20694 0 0 0 3 42814472 42814492 mRNA hsa-miR-422a PRR19 miRanda miRanda
2260 chr8 144332293 144332293 1 + C T COAD 144332280 + 144332260 144332300 41 AGGAAGAAACCCTATGAGTGCAGTGAGTGTGGGCGGATCTT AGGAAGAAACCCTATGAGTGCAGTGAGTGTGGGTGGATCTT < 41bp 1 0.213667710095228 1 0.189714044332504 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP41 ENSG00000181638;ENSG00000264668 CDS Human other chr8:144332280 chr8:144332293 nonsynonymous SNV 0.123 1 34 hm5C_associated_SNPs_20700 0 0 1 1 144332286 144332309 mRNA hsa-miR-218 ZFP41 miRanda miRanda
2261 chr10 129866475 129866475 1 + T C COAD 129866472 + 129866452 129866492 41 CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC CTTCGGAGTGCCTTTTACCCCCACTGGGATGCTGAAGTTCC < 41bp 1 0.208866457753524 1 0.0620485544204712 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866472 chr10:129866475 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_20728 0 0 0 3 129866469 129866495 mRNA hsa-miR-146a PTPRE miRanda miRanda
2262 chr10 129866475 129866475 1 + T C COAD 129866472 + 129866452 129866492 41 CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC CTTCGGAGTGCCTTTTACCCCCACTGGGATGCTGAAGTTCC < 41bp 1 0.208866457753524 1 0.0620485544204712 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866472 chr10:129866475 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_20728 0 0 0 3 129866462 129866484 mRNA hsa-miR-324-5p PTPRE miRanda miRanda
2263 chr10 129866475 129866475 1 + T C COAD 129866472 + 129866452 129866492 41 CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC CTTCGGAGTGCCTTTTACCCCCACTGGGATGCTGAAGTTCC < 41bp 1 0.208866457753524 1 0.0620485544204712 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866472 chr10:129866475 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_20728 0 0 0 3 129866475 129866495 mRNA hsa-miR-873 PTPRE miRanda miRanda
2264 chr14 105936304 105936304 1 + T C COAD 105936285 + 105936265 105936305 41 CGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTT CGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGCT < 41bp 1 0.508479975769267 1 0.678425908088684 experiment 0.983040048461467 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936285 chr14:105936304 nonsynonymous SNV 0.989 1 40 hm5C_associated_SNPs_20744 0 0 1 1 105936289 105936310 mRNA hsa-miR-30a MTA1 miRanda miRanda
2265 chr14 105936304 105936304 1 + T C COAD 105936315 + 105936295 105936335 41 GATGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGG GATGACGTGCTCTACATGGCCACAGAGGAGACCAGGTGGGG < 41bp 1 0.557400716677323 1 0.757834672927856 experiment 0.885198566645354 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936315 chr14:105936304 nonsynonymous SNV 0.989 1 10 hm5C_associated_SNPs_20745 0 0 1 1 105936289 105936310 mRNA hsa-miR-30a MTA1 miRanda miRanda
2266 chr14 105936304 105936304 1 + T C COAD 105936317 + 105936297 105936337 41 TGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGGCC TGACGTGCTCTACATGGCCACAGAGGAGACCAGGTGGGGCC < 41bp 1 0.62621413888414 1 0.744315326213837 experiment 0.74757172223172 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936317 chr14:105936304 nonsynonymous SNV 0.989 1 8 hm5C_associated_SNPs_20746 0 0 1 1 105936289 105936310 mRNA hsa-miR-30a MTA1 miRanda miRanda
2267 chr16 30096341 30096341 1 + G T COAD 30096347 + 30096327 30096367 41 CCCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGC CCCCAAGAGACACGTGGCATCCCCTCCAAGAAGCCCGTGGC < 41bp 1 0.316594357873112 1 0.239750683307648 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096347 chr16:30096341 synonymous SNV . 0 15 hm5C_associated_SNPs_20757 0 0 1 1 30096318 30096341 mRNA hsa-miR-187 PPP4C miRanda miRanda
2268 chr19 10886448 10886448 1 + T C COAD 10886461 + 10886441 10886481 41 CCAGACATCGAGTACCAGATCAAGGACATGATCCTGCAGTT CCAGACACCGAGTACCAGATCAAGGACATGATCCTGCAGTT < 41bp 1 0.614055932346319 1 0.828719854354858 experiment 0.771888135307362 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886461 chr19:10886448 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_20762 0 0 1 2 10886438 10886459 mRNA hsa-miR-378 DNM2 miRanda miRanda
2269 chr19 10886448 10886448 1 + T C COAD 10886461 + 10886441 10886481 41 CCAGACATCGAGTACCAGATCAAGGACATGATCCTGCAGTT CCAGACACCGAGTACCAGATCAAGGACATGATCCTGCAGTT < 41bp 1 0.614055932346319 1 0.828719854354858 experiment 0.771888135307362 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886461 chr19:10886448 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_20762 0 0 1 2 10886437 10886459 mRNA hsa-miR-422a DNM2 miRanda miRanda
2270 chr17 1946247 1946247 1 + C T COAD 1946262 + 1946242 1946282 41 GGACACTGACAAAGTCATCCCCTCTCAGGAGAGTGTGCAAC GGACATTGACAAAGTCATCCCCTCTCAGGAGAGTGTGCAAC < 41bp 1 0.100742170593608 1 0.0282630920410156 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OVCA2 ENSG00000262664 CDS Human protein_coding chr17:1946262 chr17:1946247 nonsynonymous SNV 0.996 1 6 hm5C_associated_SNPs_20837 0 0 1 1 1946230 1946252 mRNA hsa-miR-223 DPH1 miRanda miRanda
2271 chr16 56667676 56667676 1 + C T COAD 56667667 + 56667647 56667687 41 TCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTGCCCCGTGGG TCCCCTTCTTCCCCAGGCTGCTGCTCCTGTTGCCCCGTGGG < 41bp 1 0.22601403759929 1 0.111606806516647 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MT1M ENSG00000205364 CDS Human protein_coding chr16:56667667 chr16:56667676 synonymous SNV . 0 30 hm5C_associated_SNPs_20930 0 0 0 2 56667676 56667697 mRNA hsa-miR-96 MT1M miRanda miRanda
2272 chr16 56667676 56667676 1 + C T COAD 56667667 + 56667647 56667687 41 TCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTGCCCCGTGGG TCCCCTTCTTCCCCAGGCTGCTGCTCCTGTTGCCCCGTGGG < 41bp 1 0.22601403759929 1 0.111606806516647 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MT1M ENSG00000205364 CDS Human protein_coding chr16:56667667 chr16:56667676 synonymous SNV . 0 30 hm5C_associated_SNPs_20930 0 0 0 2 56667663 56667679 mRNA hsa-miR-214 MT1M miRanda miRanda
2273 chr9 131455957 131455957 1 + G A COAD 131455942 + 131455922 131455962 41 GACGAAACGTTCGAGTCAAACGCAGAATAAAGCCAGCAGGA GACGAAACGTTCGAGTCAAACGCAGAATAAAGCCAACAGGA < 41bp 1 0.784574856525354 1 0.618277788162231 experiment 0.430850286949293 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455942 chr9:131455957 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_20952 0 0 1 1 131455942 131455962 mRNA hsa-miR-370 SET miRanda miRanda
2274 chr1 242052807 242052807 1 + C A COAD 242052812 + 242052792 242052832 41 AAGAAACCCCTGTCCCCAGTCAGAGATAACATCCAACTAAC AAGAAACCCCTGTCCACAGTCAGAGATAACATCCAACTAAC < 41bp 1 0.699337484353487 1 0.935187518596649 experiment 0.601325031293025 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242052812 chr1:242052807 nonsynonymous SNV 0.990 4 16 hm5C_associated_SNPs_20995 0 0 1 1 242052790 242052811 mRNA hsa-miR-491-5p EXO1 miRanda miRanda
2275 chr9 140002996 140002996 1 + G A COAD 140002991 + 140002971 140003011 41 AAACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAG AAACCTGCTCAGCCTGGATGCCTACATGTTCAACACCGAAG < 41bp 1 0.0360146267422742 1 0.313847064971924 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002991 chr9:140002996 nonsynonymous SNV 0.817 4 26 hm5C_associated_SNPs_21071 0 0 1 1 140002985 140003006 mRNA hsa-miR-653 MAN1B1 miRanda miRanda
2276 chr9 140002996 140002996 1 + G A COAD 140002992 + 140002972 140003012 41 AACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAGC AACCTGCTCAGCCTGGATGCCTACATGTTCAACACCGAAGC < 41bp 1 0.649746302993845 1 0.47085976600647 experiment 0.700507394012309 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002992 chr9:140002996 nonsynonymous SNV 0.817 4 25 hm5C_associated_SNPs_21072 0 0 1 1 140002985 140003006 mRNA hsa-miR-653 MAN1B1 miRanda miRanda
2277 chr9 37770015 37770015 1 + C T COAD 37769995 + 37769975 37770015 41 CCTTGGAAACCCTTGTGTACCTGACTCCTGACTCAGAACAC CCTTGGAAACCCTTGTGTACCTGACTCCTGACTCAGAACAT < 41bp 1 0.39773015293669 1 0.0446921586990356 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37769995 chr9:37770015 synonymous SNV . 0 41 hm5C_associated_SNPs_21218 0 0 1 1 37770001 37770016 mRNA hsa-miR-335 RG9MTD3 miRanda miRanda
2278 chr9 37770015 37770015 1 + C T COAD 37770013 + 37769993 37770033 41 ACCTGACTCCTGACTCAGAACACGGTATGTAGTTGAATGCA ACCTGACTCCTGACTCAGAACATGGTATGTAGTTGAATGCA < 41bp 1 0.446633434175581 1 0.44210210442543 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37770013 chr9:37770015 synonymous SNV . 0 23 hm5C_associated_SNPs_21219 0 0 1 1 37770001 37770016 mRNA hsa-miR-335 RG9MTD3 miRanda miRanda
2279 chr19 50906852 50906852 1 + A T COAD 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACCTCATCTCTCGGGCCCAGACCCTCTAGGTGAGGGCT < 41bp 1 0.0683168216152871 1 0.208764910697937 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906852 stopgain 0.996 1 30 hm5C_associated_SNPs_21232 0 0 1 3 50906847 50906854 mRNA hsa-miR-1 POLD1 miRanda miRanda
2280 chr19 50906852 50906852 1 + A T COAD 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACCTCATCTCTCGGGCCCAGACCCTCTAGGTGAGGGCT < 41bp 1 0.0683168216152871 1 0.208764910697937 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906852 stopgain 0.996 1 30 hm5C_associated_SNPs_21232 0 0 1 3 50906847 50906854 mRNA hsa-miR-206 POLD1 miRanda miRanda
2281 chr19 50906852 50906852 1 + A T COAD 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACCTCATCTCTCGGGCCCAGACCCTCTAGGTGAGGGCT < 41bp 1 0.0683168216152871 1 0.208764910697937 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906852 stopgain 0.996 1 30 hm5C_associated_SNPs_21232 0 0 1 3 50906849 50906854 mRNA hsa-miR-613 POLD1 miRanda miRanda
2282 chr19 50906852 50906852 1 + A T COAD 50906851 + 50906831 50906871 41 ATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT ATCTCTCGGGCCCAGACCCTCTAGGTGAGGGCTGGGCAGGT < 41bp 1 0.660981640971446 1 0.741741836071014 experiment 0.678036718057107 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906851 chr19:50906852 stopgain 0.996 1 22 hm5C_associated_SNPs_21233 0 0 1 3 50906847 50906854 mRNA hsa-miR-1 POLD1 miRanda miRanda
2283 chr19 50906852 50906852 1 + A T COAD 50906851 + 50906831 50906871 41 ATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT ATCTCTCGGGCCCAGACCCTCTAGGTGAGGGCTGGGCAGGT < 41bp 1 0.660981640971446 1 0.741741836071014 experiment 0.678036718057107 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906851 chr19:50906852 stopgain 0.996 1 22 hm5C_associated_SNPs_21233 0 0 1 3 50906847 50906854 mRNA hsa-miR-206 POLD1 miRanda miRanda
2284 chr19 50906852 50906852 1 + A T COAD 50906851 + 50906831 50906871 41 ATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT ATCTCTCGGGCCCAGACCCTCTAGGTGAGGGCTGGGCAGGT < 41bp 1 0.660981640971446 1 0.741741836071014 experiment 0.678036718057107 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906851 chr19:50906852 stopgain 0.996 1 22 hm5C_associated_SNPs_21233 0 0 1 3 50906849 50906854 mRNA hsa-miR-613 POLD1 miRanda miRanda
2285 chr10 94757358 94757358 1 + T C COAD 94757363 + 94757343 94757383 41 AGTTTAACTTAGATGTCATACAGTGTGAATGTAAGTACTAT AGTTTAACTTAGATGCCATACAGTGTGAATGTAAGTACTAT < 41bp 1 0.20934229687425 1 0.141951501369476 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94757363 chr10:94757358 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_21248 0 0 1 1 94757349 94757370 mRNA hsa-miR-141 EXOC6 miRanda miRanda
2286 chr1 78325044 78325044 1 + A G COAD 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGAGACAGTGATTTTCTTGCCAAGCTTCACTGTATTCGACA < 41bp 1 0.399853747371745 1 0.193935185670853 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325044 synonymous SNV . 0 24 hm5C_associated_SNPs_21303 0 0 0 1 78325021 78325044 mRNA hsa-miR-182 FAM73A miRanda miRanda
2287 chr1 47838753 47838753 1 + G A COAD 47838752 + 47838732 47838772 41 GGGAAGGCAGATGTATCTTTCGTTCTCTTTTTTGACTGTAA GGGAAGGCAGATGTATCTTTCATTCTCTTTTTTGACTGTAA < 41bp 1 0.120365995108156 1 0.227583110332489 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838752 chr1:47838753 nonsynonymous SNV 0.989 1 22 hm5C_associated_SNPs_21311 0 0 1 2 47838752 47838772 mRNA hsa-miR-212 CMPK1 miRanda miRanda
2288 chr1 47838753 47838753 1 + G A COAD 47838752 + 47838732 47838772 41 GGGAAGGCAGATGTATCTTTCGTTCTCTTTTTTGACTGTAA GGGAAGGCAGATGTATCTTTCATTCTCTTTTTTGACTGTAA < 41bp 1 0.120365995108156 1 0.227583110332489 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838752 chr1:47838753 nonsynonymous SNV 0.989 1 22 hm5C_associated_SNPs_21311 0 0 1 2 47838751 47838772 mRNA hsa-miR-132 CMPK1 miRanda miRanda
2289 chr3 141644455 141644455 1 + A C COAD 141644475 + 141644455 141644495 41 AGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT CGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT < 41bp 1 0.687961553581538 1 0.4543417096138 experiment 0.624076892836923 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644475 chr3:141644455 nonsynonymous SNV 0.885 3 1 hm5C_associated_SNPs_21414 0 0 1 6 141644436 141644457 mRNA hsa-miR-25 ATP1B3 miRanda miRanda
2290 chr3 141644455 141644455 1 + A C COAD 141644475 + 141644455 141644495 41 AGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT CGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT < 41bp 1 0.687961553581538 1 0.4543417096138 experiment 0.624076892836923 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644475 chr3:141644455 nonsynonymous SNV 0.885 3 1 hm5C_associated_SNPs_21414 0 0 1 6 141644438 141644457 mRNA hsa-miR-32 ATP1B3 miRanda miRanda
2291 chr3 141644455 141644455 1 + A C COAD 141644475 + 141644455 141644495 41 AGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT CGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT < 41bp 1 0.687961553581538 1 0.4543417096138 experiment 0.624076892836923 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644475 chr3:141644455 nonsynonymous SNV 0.885 3 1 hm5C_associated_SNPs_21414 0 0 1 6 141644436 141644457 mRNA hsa-miR-92a ATP1B3 miRanda miRanda
2292 chr3 141644455 141644455 1 + A C COAD 141644475 + 141644455 141644495 41 AGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT CGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT < 41bp 1 0.687961553581538 1 0.4543417096138 experiment 0.624076892836923 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644475 chr3:141644455 nonsynonymous SNV 0.885 3 1 hm5C_associated_SNPs_21414 0 0 1 6 141644436 141644457 mRNA hsa-miR-363 ATP1B3 miRanda miRanda
2293 chr3 141644455 141644455 1 + A C COAD 141644475 + 141644455 141644495 41 AGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT CGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT < 41bp 1 0.687961553581538 1 0.4543417096138 experiment 0.624076892836923 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644475 chr3:141644455 nonsynonymous SNV 0.885 3 1 hm5C_associated_SNPs_21414 0 0 1 6 141644436 141644457 mRNA hsa-miR-367 ATP1B3 miRanda miRanda
2294 chr3 141644455 141644455 1 + A C COAD 141644475 + 141644455 141644495 41 AGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT CGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT < 41bp 1 0.687961553581538 1 0.4543417096138 experiment 0.624076892836923 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644475 chr3:141644455 nonsynonymous SNV 0.885 3 1 hm5C_associated_SNPs_21414 0 0 1 6 141644436 141644457 mRNA hsa-miR-92b ATP1B3 miRanda miRanda
2295 chr12 110457028 110457028 1 + G A COAD 110457008 + 110456988 110457028 41 GTCACCACCGAACGCTTCGACCTTTCCCAAGAAATGGAGCG GTCACCACCGAACGCTTCGACCTTTCCCAAGAAATGGAGCA < 41bp 1 0.0139172734935249 1 0.0654219686985016 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110457008 chr12:110457028 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_21490 0 0 1 1 110457017 110457039 mRNA hsa-miR-125a-3p ANKRD13A miRanda miRanda
2296 chr15 25220524 25220524 1 + A G COAD 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAGTAGCAGGATGCTGCAGCACATTGACTATAGA < 41bp 1 0.641117452562414 1 0.520973026752472 experiment 0.717765094875172 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220524 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_21495 0 0 0 2 25220511 25220533 mRNA hsa-miR-103 SNURF miRanda miRanda
2297 chr15 25220524 25220524 1 + A G COAD 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAGTAGCAGGATGCTGCAGCACATTGACTATAGA < 41bp 1 0.641117452562414 1 0.520973026752472 experiment 0.717765094875172 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220524 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_21495 0 0 0 2 25220511 25220533 mRNA hsa-miR-107 SNURF miRanda miRanda
2298 chr12 13232899 13232899 1 + C T COAD 13232896 + 13232876 13232916 41 CCAAAATTGGCCGTGGGGAGCTGCGAAGATTTCTCTCTAGG CCAAAATTGGCCGTGGGGAGCTGTGAAGATTTCTCTCTAGG < 41bp 1 0.314202467918896 1 0.110538274049759 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232896 chr12:13232899 stopgain 1.000 0 24 hm5C_associated_SNPs_21563 0 0 1 1 13232890 13232911 mRNA hsa-miR-539 KIAA1467 miRanda miRanda
2299 chr6 149730820 149730820 1 + C T COAD 149730822 + 149730802 149730842 41 AACCATCCAGCCTTAATTCGCTGTGAACAGTGTGAGATGCC AACCATCCAGCCTTAATTTGCTGTGAACAGTGTGAGATGCC < 41bp 1 0.369157259892381 1 0.291173219680786 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TAB2 ENSG00000055208 CDS Human protein_coding chr6:149730822 chr6:149730820 nonsynonymous SNV 0.999 4 19 hm5C_associated_SNPs_21564 0 0 1 1 149730818 149730838 mRNA hsa-miR-342-3p TAB2 miRanda miRanda
2300 chr5 56526785 56526785 1 + G A COAD 56526784 + 56526764 56526804 41 GCTTTGATTCTGCTATTGGGCGTCCTAATGGAGGTAAAATT GCTTTGATTCTGCTATTGGGCATCCTAATGGAGGTAAAATT < 41bp 1 0.173895391090825 1 0.0663838982582092 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526784 chr5:56526785 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_21583 0 0 1 1 56526775 56526796 mRNA hsa-miR-136 GPBP1 miRanda miRanda
2301 chr20 39721181 39721181 1 + C A COAD 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATTTGCACCACCATATGAGCCTCTTCCAGAGAATGTCAAGT < 41bp 1 0.100197390313904 1 0.0352682173252106 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721181 synonymous SNV . 0 7 hm5C_associated_SNPs_21677 0 0 1 3 39721180 39721202 mRNA hsa-miR-7 TOP1 miRanda miRanda
2302 chr20 39721181 39721181 1 + C A COAD 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATTTGCACCACCATATGAGCCTCTTCCAGAGAATGTCAAGT < 41bp 1 0.100197390313904 1 0.0352682173252106 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721181 synonymous SNV . 0 7 hm5C_associated_SNPs_21677 0 0 1 3 39721177 39721198 mRNA hsa-miR-485-5p TOP1 miRanda miRanda
2303 chr20 39721181 39721181 1 + C A COAD 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATTTGCACCACCATATGAGCCTCTTCCAGAGAATGTCAAGT < 41bp 1 0.100197390313904 1 0.0352682173252106 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721181 synonymous SNV . 0 7 hm5C_associated_SNPs_21677 0 0 1 3 39721165 39721186 mRNA hsa-miR-491-5p TOP1 miRanda miRanda
2304 chr1 45808613 45808613 1 + G A COAD 45808600 + 45808580 45808620 41 ATCCTTCCAGCATGAGGGACCATATTGATTACCGCTGCTGC ATCCTTCCAGCATGAGGGACCATATTGATTACCACTGCTGC < 41bp 1 0.0962581955528892 1 0.0473159849643707 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TOE1 ENSG00000132773 CDS Human protein_coding chr1:45808600 chr1:45808613 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_21686 0 0 1 1 45808596 45808619 mRNA hsa-miR-503 TOE1 miRanda miRanda
2305 chr2 85598241 85598241 1 + G A COAD 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGACTCGCCGCCCTCCGACACTACCTCT < 41bp 1 0.369796373685449 1 0.271815210580826 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598241 synonymous SNV . 0 16 hm5C_associated_SNPs_21692 0 0 0 1 85598241 85598263 mRNA hsa-miR-142-3p ELMOD3 miRanda miRanda
2306 chr2 85598241 85598241 1 + G A COAD 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGACTCGCCGCCCTCCGACACTACCTCTTCGGG < 41bp 1 0.691612576399922 1 0.803031206130981 experiment 0.616774847200155 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598241 synonymous SNV . 0 11 hm5C_associated_SNPs_21693 0 0 0 1 85598241 85598263 mRNA hsa-miR-142-3p ELMOD3 miRanda miRanda
2307 chr17 53852170 53852170 1 + G T COAD 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCTATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT < 41bp 1 0.288001746518068 1 0.117260336875916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852170 nonsynonymous SNV 0.998 4 6 hm5C_associated_SNPs_21721 0 0 1 3 53852153 53852172 mRNA hsa-miR-26a PCTP miRanda miRanda
2308 chr17 53852170 53852170 1 + G T COAD 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCTATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT < 41bp 1 0.288001746518068 1 0.117260336875916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852170 nonsynonymous SNV 0.998 4 6 hm5C_associated_SNPs_21721 0 0 1 3 53852153 53852172 mRNA hsa-miR-26b PCTP miRanda miRanda
2309 chr17 53852170 53852170 1 + G T COAD 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCTATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT < 41bp 1 0.288001746518068 1 0.117260336875916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852170 nonsynonymous SNV 0.998 4 6 hm5C_associated_SNPs_21721 0 0 1 3 53852155 53852172 mRNA hsa-miR-1297 PCTP miRanda miRanda
2310 chr2 202141597 202141597 1 + T A DLBC 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTCGGGGATACTGACTGATCATCAACAATCA < 41bp 1 0.377242378943362 1 0.228742122650146 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141597 stopgain 0.993 0 24 hm5C_associated_SNPs_21885 0 0 1 1 202141583 202141604 mRNA hsa-miR-383 CASP8 miRanda miRanda
2311 chr17 62223488 62223488 1 + G T ESCA 62223469 + 62223449 62223489 41 ATGACATTCCAATTAAAGCACGTGTTAGACTGCTGACGCGG ATGACATTCCAATTAAAGCACGTGTTAGACTGCTGACGCTG < 41bp 1 0.388667443523564 1 0.166543364524841 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223469 chr17:62223488 . . 0 40 hm5C_associated_SNPs_21959 0 0 1 1 62223483 62223505 mRNA hsa-miR-145 SNORD104 miRanda miRanda
2312 chr17 62223488 62223488 1 + G T ESCA 62223481 + 62223461 62223501 41 TTAAAGCACGTGTTAGACTGCTGACGCGGGTGATGCGAACT TTAAAGCACGTGTTAGACTGCTGACGCTGGTGATGCGAACT < 41bp 1 0.311704372759577 1 0.172475814819336 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223481 chr17:62223488 . . 0 28 hm5C_associated_SNPs_21960 0 0 1 1 62223483 62223505 mRNA hsa-miR-145 SNORD104 miRanda miRanda
2313 chr17 62223488 62223488 1 + G T ESCA 62223485 + 62223465 62223505 41 AGCACGTGTTAGACTGCTGACGCGGGTGATGCGAACTGGAG AGCACGTGTTAGACTGCTGACGCTGGTGATGCGAACTGGAG < 41bp 1 0.539776241493654 1 0.138917505741119 experiment 0.920447517012692 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223485 chr17:62223488 . . 0 24 hm5C_associated_SNPs_21961 0 0 1 1 62223483 62223505 mRNA hsa-miR-145 SNORD104 miRanda miRanda
2314 chr17 62223488 62223488 1 + G T ESCA 62223496 + 62223476 62223516 41 GACTGCTGACGCGGGTGATGCGAACTGGAGTCTGAGCCTGC GACTGCTGACGCTGGTGATGCGAACTGGAGTCTGAGCCTGC < 41bp 1 0.395850369836482 1 0.316812306642532 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223496 chr17:62223488 . . 0 13 hm5C_associated_SNPs_21962 0 0 1 1 62223483 62223505 mRNA hsa-miR-145 SNORD104 miRanda miRanda
2315 chrX 73042914 73042914 1 - C A ESCA 73042925 - 73042905 73042945 41 GTATTTGCTCATTGGTCTGGCTTAGAGACAGGAAGACATAT GTATTTGCTCATTGGTCTGGCTTAGAGACAGTAAGACATAT < 41bp 1 0.0549498601672807 1 0.112165689468384 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042925 chrX:73042914 . . 0 32 hm5C_associated_SNPs_21970 0 0 1 1 73042896 73042918 lncRNA hsa-miR-137 XIST miRanda starBase2
2316 chrX 73042914 73042914 1 - C A ESCA 73042929 - 73042909 73042949 41 AAAGGTATTTGCTCATTGGTCTGGCTTAGAGACAGGAAGAC AAAGGTATTTGCTCATTGGTCTGGCTTAGAGACAGTAAGAC < 41bp 1 0.168586121315147 1 0.219120562076569 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042929 chrX:73042914 . . 0 36 hm5C_associated_SNPs_21971 0 0 1 1 73042896 73042918 lncRNA hsa-miR-137 XIST miRanda starBase2
2317 chr19 42814490 42814490 1 + A T ESCA 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCTGAGCA < 41bp 1 0.161348702947285 1 0.22471085190773 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814490 synonymous SNV . 0 36 hm5C_associated_SNPs_21987 0 0 0 4 42814473 42814492 mRNA hsa-miR-378 PRR19 miRanda miRanda
2318 chr19 42814490 42814490 1 + A T ESCA 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCTGAGCA < 41bp 1 0.161348702947285 1 0.22471085190773 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814490 synonymous SNV . 0 36 hm5C_associated_SNPs_21987 0 0 0 4 42814473 42814494 mRNA hsa-miR-330-5p PRR19 miRanda miRanda
2319 chr19 42814490 42814490 1 + A T ESCA 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCTGAGCA < 41bp 1 0.161348702947285 1 0.22471085190773 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814490 synonymous SNV . 0 36 hm5C_associated_SNPs_21987 0 0 0 4 42814476 42814494 mRNA hsa-miR-326 PRR19 miRanda miRanda
2320 chr19 42814490 42814490 1 + A T ESCA 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCTGAGCA < 41bp 1 0.161348702947285 1 0.22471085190773 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814490 synonymous SNV . 0 36 hm5C_associated_SNPs_21987 0 0 0 4 42814472 42814492 mRNA hsa-miR-422a PRR19 miRanda miRanda
2321 chr15 74335396 74335396 1 + C A ESCA 74335388 + 74335368 74335408 41 TGACCTCCAGCTGGAAGGCCCCAGCACCCTCAGGGTCCTGG TGACCTCCAGCTGGAAGGCCCCAGCACCATCAGGGTCCTGG < 41bp 1 0.159990368775343 1 0.185105681419373 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74335388 chr15:74335396 nonsynonymous SNV 0.129 2 29 hm5C_associated_SNPs_21998 0 0 0 1 74335383 74335405 mRNA hsa-miR-504 PML miRanda miRanda
2322 chr15 75190056 75190056 1 + C T ESCA 75190039 + 75190019 75190059 41 AGCTTACTGAGCCGAAGGACCTGCTGATATTCCGTGCCTGC AGCTTACTGAGCCGAAGGACCTGCTGATATTCCGTGCTTGC < 41bp 1 0.579720931854541 1 0.0881657004356384 experiment 0.840558136290918 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MPI ENSG00000178802 CDS Human protein_coding chr15:75190039 chr15:75190056 synonymous SNV . 0 38 hm5C_associated_SNPs_22024 0 0 1 3 75190040 75190061 mRNA hsa-miR-16 MPI miRanda miRanda
2323 chr15 75190056 75190056 1 + C T ESCA 75190039 + 75190019 75190059 41 AGCTTACTGAGCCGAAGGACCTGCTGATATTCCGTGCCTGC AGCTTACTGAGCCGAAGGACCTGCTGATATTCCGTGCTTGC < 41bp 1 0.579720931854541 1 0.0881657004356384 experiment 0.840558136290918 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MPI ENSG00000178802 CDS Human protein_coding chr15:75190039 chr15:75190056 synonymous SNV . 0 38 hm5C_associated_SNPs_22024 0 0 1 3 75190041 75190062 mRNA hsa-miR-214 MPI miRanda miRanda
2324 chr15 75190056 75190056 1 + C T ESCA 75190039 + 75190019 75190059 41 AGCTTACTGAGCCGAAGGACCTGCTGATATTCCGTGCCTGC AGCTTACTGAGCCGAAGGACCTGCTGATATTCCGTGCTTGC < 41bp 1 0.579720931854541 1 0.0881657004356384 experiment 0.840558136290918 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MPI ENSG00000178802 CDS Human protein_coding chr15:75190039 chr15:75190056 synonymous SNV . 0 38 hm5C_associated_SNPs_22024 0 0 1 3 75190041 75190061 mRNA hsa-miR-195 MPI miRanda miRanda
2325 chr11 65270548 65270548 1 + G C ESCA 65270555 + 65270535 65270575 41 GATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTT GATCAAGTGGATTCAGGAGGCTGTGCTGTGTGCCAATGTTT < 41bp 1 0.461019318533416 1 0.173072129487991 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270555 chr11:65270548 . . 0 14 hm5C_associated_SNPs_22026 0 0 1 1 65270548 65270571 lncRNA hsa-miR-96-5p MALAT1 miRanda starBase2
2326 chr11 65270548 65270548 1 + G C ESCA 65270560 + 65270540 65270580 41 AGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTT AGTGGATTCAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTT < 41bp 1 0.508786892720546 1 0.246183156967163 experiment 0.982426214558908 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270560 chr11:65270548 . . 0 9 hm5C_associated_SNPs_22027 0 0 1 1 65270548 65270571 lncRNA hsa-miR-96-5p MALAT1 miRanda starBase2
2327 chr11 65270548 65270548 1 + G C ESCA 65270567 + 65270547 65270587 41 TGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTTGCCTCAG TCAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTTGCCTCAG < 41bp 1 0.309094900115389 1 0.140723586082458 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270567 chr11:65270548 . . 0 2 hm5C_associated_SNPs_22028 0 0 1 1 65270548 65270571 lncRNA hsa-miR-96-5p MALAT1 miRanda starBase2
2328 chr15 91456129 91456129 1 + C T ESCA 91456118 + 91456098 91456138 41 TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCCGTGCTGCG TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCTCGTGCTGCG < 41bp 1 0.682958074577971 1 0.852319836616516 experiment 0.634083850844058 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91456118 chr15:91456129 nonsynonymous SNV 0.833 4 32 hm5C_associated_SNPs_22048 0 0 1 1 91456127 91456147 mRNA hsa-miR-152 MAN2A2 miRanda miRanda
2329 chr3 20019889 20019889 1 + G A ESCA 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATGACAATAGGTAAGATTAATATCT < 41bp 1 0.236159101610772 1 0.161831438541412 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019889 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_22086 0 0 0 3 20019889 20019895 mRNA hsa-miR-96 RAB5A miRanda miRanda
2330 chr3 20019889 20019889 1 + G A ESCA 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATGACAATAGGTAAGATTAATATCT < 41bp 1 0.236159101610772 1 0.161831438541412 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019889 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_22086 0 0 0 3 20019888 20019895 mRNA hsa-miR-182 RAB5A miRanda miRanda
2331 chr3 20019889 20019889 1 + G A ESCA 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATGACAATAGGTAAGATTAATATCT < 41bp 1 0.236159101610772 1 0.161831438541412 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019889 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_22086 0 0 0 3 20019888 20019895 mRNA hsa-miR-9 RAB5A miRanda miRanda
2332 chr20 61292523 61292523 1 + C T ESCA 61292526 + 61292506 61292546 41 AAACCATCAGAGACCTGCCTCTGTAAGGACCGGAGTCGGGA AAACCATCAGAGACCTGTCTCTGTAAGGACCGGAGTCGGGA < 41bp 1 0.460953751077654 1 0.402170062065125 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61292526 chr20:61292523 nonsynonymous SNV 0.719 2 18 hm5C_associated_SNPs_22113 0 0 1 1 61292512 61292527 mRNA hsa-miR-185 SLCO4A1 miRanda miRanda
2333 chr4 53579529 53579529 1 + G A ESCA 53579509 + 53579489 53579529 41 GAGAAGAGACTGGAAAGCTCCTCTTTGGATCCTGTCTGGAG GAGAAGAGACTGGAAAGCTCCTCTTTGGATCCTGTCTGGAA < 41bp 1 0.233550792764716 1 0.189675658941269 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579509 chr4:53579529 . . 0 41 hm5C_associated_SNPs_22121 0 0 1 1 53579514 53579536 mRNA hsa-miR-758 SNORA26 miRanda miRanda
2334 chr4 53579529 53579529 1 + G A ESCA 53579519 + 53579499 53579539 41 TGGAAAGCTCCTCTTTGGATCCTGTCTGGAGTCACAACTGA TGGAAAGCTCCTCTTTGGATCCTGTCTGGAATCACAACTGA < 41bp 1 0.0888531349011764 1 0.28423285484314 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579519 chr4:53579529 . . 0 31 hm5C_associated_SNPs_22122 0 0 1 1 53579514 53579536 mRNA hsa-miR-758 SNORA26 miRanda miRanda
2335 chr4 53579529 53579529 1 + G A ESCA 53579520 + 53579500 53579540 41 GGAAAGCTCCTCTTTGGATCCTGTCTGGAGTCACAACTGAA GGAAAGCTCCTCTTTGGATCCTGTCTGGAATCACAACTGAA < 41bp 1 0.106759199714655 1 0.136604875326157 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579520 chr4:53579529 . . 0 30 hm5C_associated_SNPs_22123 0 0 1 1 53579514 53579536 mRNA hsa-miR-758 SNORA26 miRanda miRanda
2336 chr4 53579529 53579529 1 + G A ESCA 53579531 + 53579511 53579551 41 CTTTGGATCCTGTCTGGAGTCACAACTGAACCAGAAAAAGT CTTTGGATCCTGTCTGGAATCACAACTGAACCAGAAAAAGT < 41bp 1 0.582844859955532 1 0.37837541103363 experiment 0.834310280088936 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579531 chr4:53579529 . . 0 19 hm5C_associated_SNPs_22124 0 0 1 1 53579514 53579536 mRNA hsa-miR-758 SNORA26 miRanda miRanda
2337 chr4 53579529 53579529 1 + G A ESCA 53579536 + 53579516 53579556 41 GATCCTGTCTGGAGTCACAACTGAACCAGAAAAAGTTTCGT GATCCTGTCTGGAATCACAACTGAACCAGAAAAAGTTTCGT < 41bp 1 0.442063168160029 1 0.504998803138733 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579536 chr4:53579529 . . 0 14 hm5C_associated_SNPs_22125 0 0 1 1 53579514 53579536 mRNA hsa-miR-758 SNORA26 miRanda miRanda
2338 chr7 142457375 142457375 1 + C G ESCA 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTGGTG < 41bp 1 0.0382867590790145 1 0.0283523499965668 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457375 nonsynonymous SNV 0.046 1 38 hm5C_associated_SNPs_22129 0 0 0 1 142457357 142457375 mRNA hsa-miR-335 PRSS2 miRanda miRanda
2339 chr7 142457375 142457375 1 + C G ESCA 142457359 + 142457339 142457379 41 AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTGGTGA < 41bp 1 0.174388506006905 1 0.317447125911713 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457359 chr7:142457375 nonsynonymous SNV 0.046 1 37 hm5C_associated_SNPs_22130 0 0 0 1 142457357 142457375 mRNA hsa-miR-335 PRSS2 miRanda miRanda
2340 chr7 142457375 142457375 1 + C G ESCA 142457367 + 142457347 142457387 41 CCTGATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATG CCTGATCCTTACCTTTGTGGCAGCTGCTGGTGAGTATCATG < 41bp 1 0.335676629416038 1 0.170626759529114 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457367 chr7:142457375 nonsynonymous SNV 0.046 1 29 hm5C_associated_SNPs_22131 0 0 0 1 142457357 142457375 mRNA hsa-miR-335 PRSS2 miRanda miRanda
2341 chr7 142457375 142457375 1 + C G ESCA 142457370 + 142457350 142457390 41 GATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC GATCCTTACCTTTGTGGCAGCTGCTGGTGAGTATCATGCCC < 41bp 1 0.395646456349332 1 0.204790323972702 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457370 chr7:142457375 nonsynonymous SNV 0.046 1 26 hm5C_associated_SNPs_22132 0 0 0 1 142457357 142457375 mRNA hsa-miR-335 PRSS2 miRanda miRanda
2342 chr7 142457375 142457375 1 + C G ESCA 142457373 + 142457353 142457393 41 CCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGC CCTTACCTTTGTGGCAGCTGCTGGTGAGTATCATGCCCTGC < 41bp 1 0.638695516594574 1 0.32762399315834 experiment 0.722608966810853 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457373 chr7:142457375 nonsynonymous SNV 0.046 1 23 hm5C_associated_SNPs_22133 0 0 0 1 142457357 142457375 mRNA hsa-miR-335 PRSS2 miRanda miRanda
2343 chr12 13232915 13232915 1 + G C ESCA 13232896 + 13232876 13232916 41 CCAAAATTGGCCGTGGGGAGCTGCGAAGATTTCTCTCTAGG CCAAAATTGGCCGTGGGGAGCTGCGAAGATTTCTCTCTACG < 41bp 1 0.52722015181533 1 0.213467180728912 experiment 0.945559696369339 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232896 chr12:13232915 nonsynonymous SNV 0.995 4 40 hm5C_associated_SNPs_22158 0 0 0 1 13232908 13232929 mRNA hsa-miR-495 KIAA1467 miRanda miRanda
2344 chr5 86669996 86669996 1 + T C ESCA 86670013 + 86669993 86670033 41 TTTTACATATTGAAGAAGCCCATAAACTCCCAGTAAAACAT TTTCACATATTGAAGAAGCCCATAAACTCCCAGTAAAACAT < 41bp 1 0.203766806602451 1 0.256947875022888 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RASA1 ENSG00000145715 CDS Human protein_coding chr5:86670013 chr5:86669996 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_22202 0 0 0 2 86669995 86670016 mRNA hsa-miR-135a RASA1 miRanda miRanda
2345 chr5 86669996 86669996 1 + T C ESCA 86670013 + 86669993 86670033 41 TTTTACATATTGAAGAAGCCCATAAACTCCCAGTAAAACAT TTTCACATATTGAAGAAGCCCATAAACTCCCAGTAAAACAT < 41bp 1 0.203766806602451 1 0.256947875022888 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RASA1 ENSG00000145715 CDS Human protein_coding chr5:86670013 chr5:86669996 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_22202 0 0 0 2 86669995 86670016 mRNA hsa-miR-135b RASA1 miRanda miRanda
2346 chr20 48568670 48568670 1 + G A ESCA 48568680 + 48568660 48568700 41 CTCCATCATCGACCAGTGAGCAGAGTCCGTGCTTGCTATCT CTCCATCATCAACCAGTGAGCAGAGTCCGTGCTTGCTATCT < 41bp 1 0.63769188045972 1 0.558053612709045 experiment 0.724616239080561 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF114 ENSG00000124226 CDS Human protein_coding chr20:48568680 chr20:48568670 nonsynonymous SNV 0.475 5 11 hm5C_associated_SNPs_22246 0 0 1 1 48568650 48568672 mRNA hsa-miR-433 RNF114 miRanda miRanda
2347 chr11 124502084 124502084 1 + C T ESCA 124502089 + 124502069 124502109 41 GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCACAGGG GTAGATACTCACCTGTAGCACTTGAAGTCTCCATCACAGGG < 41bp 1 0.61557069857651 1 0.126835942268372 experiment 0.768858602846979 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502089 chr11:124502084 stopgain 0.970 1 16 hm5C_associated_SNPs_22251 0 0 1 12 124502071 124502092 mRNA hsa-miR-302a TBRG1 miRanda miRanda
2348 chr11 124502084 124502084 1 + C T ESCA 124502089 + 124502069 124502109 41 GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCACAGGG GTAGATACTCACCTGTAGCACTTGAAGTCTCCATCACAGGG < 41bp 1 0.61557069857651 1 0.126835942268372 experiment 0.768858602846979 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502089 chr11:124502084 stopgain 0.970 1 16 hm5C_associated_SNPs_22251 0 0 1 12 124502071 124502092 mRNA hsa-miR-302b TBRG1 miRanda miRanda
2349 chr11 124502084 124502084 1 + C T ESCA 124502089 + 124502069 124502109 41 GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCACAGGG GTAGATACTCACCTGTAGCACTTGAAGTCTCCATCACAGGG < 41bp 1 0.61557069857651 1 0.126835942268372 experiment 0.768858602846979 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502089 chr11:124502084 stopgain 0.970 1 16 hm5C_associated_SNPs_22251 0 0 1 12 124502071 124502092 mRNA hsa-miR-302c TBRG1 miRanda miRanda
2350 chr11 124502084 124502084 1 + C T ESCA 124502089 + 124502069 124502109 41 GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCACAGGG GTAGATACTCACCTGTAGCACTTGAAGTCTCCATCACAGGG < 41bp 1 0.61557069857651 1 0.126835942268372 experiment 0.768858602846979 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502089 chr11:124502084 stopgain 0.970 1 16 hm5C_associated_SNPs_22251 0 0 1 12 124502073 124502092 mRNA hsa-miR-302d TBRG1 miRanda miRanda
2351 chr11 124502084 124502084 1 + C T ESCA 124502089 + 124502069 124502109 41 GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCACAGGG GTAGATACTCACCTGTAGCACTTGAAGTCTCCATCACAGGG < 41bp 1 0.61557069857651 1 0.126835942268372 experiment 0.768858602846979 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502089 chr11:124502084 stopgain 0.970 1 16 hm5C_associated_SNPs_22251 0 0 1 12 124502073 124502092 mRNA hsa-miR-372 TBRG1 miRanda miRanda
2352 chr11 124502084 124502084 1 + C T ESCA 124502089 + 124502069 124502109 41 GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCACAGGG GTAGATACTCACCTGTAGCACTTGAAGTCTCCATCACAGGG < 41bp 1 0.61557069857651 1 0.126835942268372 experiment 0.768858602846979 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502089 chr11:124502084 stopgain 0.970 1 16 hm5C_associated_SNPs_22251 0 0 1 12 124502070 124502092 mRNA hsa-miR-373 TBRG1 miRanda miRanda
2353 chr11 124502084 124502084 1 + C T ESCA 124502089 + 124502069 124502109 41 GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCACAGGG GTAGATACTCACCTGTAGCACTTGAAGTCTCCATCACAGGG < 41bp 1 0.61557069857651 1 0.126835942268372 experiment 0.768858602846979 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502089 chr11:124502084 stopgain 0.970 1 16 hm5C_associated_SNPs_22251 0 0 1 12 124502072 124502092 mRNA hsa-miR-520e TBRG1 miRanda miRanda
2354 chr11 124502084 124502084 1 + C T ESCA 124502089 + 124502069 124502109 41 GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCACAGGG GTAGATACTCACCTGTAGCACTTGAAGTCTCCATCACAGGG < 41bp 1 0.61557069857651 1 0.126835942268372 experiment 0.768858602846979 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502089 chr11:124502084 stopgain 0.970 1 16 hm5C_associated_SNPs_22251 0 0 1 12 124502071 124502092 mRNA hsa-miR-520a-3p TBRG1 miRanda miRanda
2355 chr11 124502084 124502084 1 + C T ESCA 124502089 + 124502069 124502109 41 GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCACAGGG GTAGATACTCACCTGTAGCACTTGAAGTCTCCATCACAGGG < 41bp 1 0.61557069857651 1 0.126835942268372 experiment 0.768858602846979 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502089 chr11:124502084 stopgain 0.970 1 16 hm5C_associated_SNPs_22251 0 0 1 12 124502072 124502092 mRNA hsa-miR-520b TBRG1 miRanda miRanda
2356 chr11 124502084 124502084 1 + C T ESCA 124502089 + 124502069 124502109 41 GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCACAGGG GTAGATACTCACCTGTAGCACTTGAAGTCTCCATCACAGGG < 41bp 1 0.61557069857651 1 0.126835942268372 experiment 0.768858602846979 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502089 chr11:124502084 stopgain 0.970 1 16 hm5C_associated_SNPs_22251 0 0 1 12 124502071 124502092 mRNA hsa-miR-520c-3p TBRG1 miRanda miRanda
2357 chr11 124502084 124502084 1 + C T ESCA 124502089 + 124502069 124502109 41 GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCACAGGG GTAGATACTCACCTGTAGCACTTGAAGTCTCCATCACAGGG < 41bp 1 0.61557069857651 1 0.126835942268372 experiment 0.768858602846979 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502089 chr11:124502084 stopgain 0.970 1 16 hm5C_associated_SNPs_22251 0 0 1 12 124502071 124502092 mRNA hsa-miR-520d-3p TBRG1 miRanda miRanda
2358 chr11 124502084 124502084 1 + C T ESCA 124502089 + 124502069 124502109 41 GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCACAGGG GTAGATACTCACCTGTAGCACTTGAAGTCTCCATCACAGGG < 41bp 1 0.61557069857651 1 0.126835942268372 experiment 0.768858602846979 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502089 chr11:124502084 stopgain 0.970 1 16 hm5C_associated_SNPs_22251 0 0 1 12 124502076 124502092 mRNA hsa-miR-302e TBRG1 miRanda miRanda
2359 chr1 109643003 109643003 1 + G C ESCA 109642983 + 109642963 109643003 41 CCCCTGCGCCCCTCCTCCCGCTTACACTTTGATCTTATTTG CCCCTGCGCCCCTCCTCCCGCTTACACTTTGATCTTATTTC < 41bp 1 0.0565278823628178 1 0.0972627997398376 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642983 chr1:109643003 . . 0 41 hm5C_associated_SNPs_22301 0 0 1 1 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2360 chr1 109643003 109643003 1 + G C ESCA 109642987 + 109642967 109643007 41 TGCGCCCCTCCTCCCGCTTACACTTTGATCTTATTTGATCG TGCGCCCCTCCTCCCGCTTACACTTTGATCTTATTTCATCG < 41bp 1 0.192925589899402 1 0.0293286740779877 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642987 chr1:109643003 . . 0 37 hm5C_associated_SNPs_22302 0 0 1 1 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2361 chr1 109643003 109643003 1 + G C ESCA 109642989 + 109642969 109643009 41 CGCCCCTCCTCCCGCTTACACTTTGATCTTATTTGATCGGA CGCCCCTCCTCCCGCTTACACTTTGATCTTATTTCATCGGA < 41bp 1 0.263687517335586 1 0.0330907106399536 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642989 chr1:109643003 . . 0 35 hm5C_associated_SNPs_22303 0 0 1 1 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2362 chr1 109643003 109643003 1 + G C ESCA 109642996 + 109642976 109643016 41 CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTGAC CCTCCCGCTTACACTTTGATCTTATTTCATCGGATCGTGAC < 41bp 1 0.222882184756564 1 0.0148472785949707 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642996 chr1:109643003 . . 0 28 hm5C_associated_SNPs_22304 0 0 1 1 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2363 chr1 109643003 109643003 1 + G C ESCA 109643006 + 109642986 109643026 41 ACACTTTGATCTTATTTGATCGGATCGTGACCCCAGCCCCG ACACTTTGATCTTATTTCATCGGATCGTGACCCCAGCCCCG < 41bp 1 0.527722091844874 1 0.77061665058136 experiment 0.944555816310251 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643006 chr1:109643003 . . 0 18 hm5C_associated_SNPs_22305 0 0 1 1 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2364 chr1 109643003 109643003 1 + G C ESCA 109643011 + 109642991 109643031 41 TTGATCTTATTTGATCGGATCGTGACCCCAGCCCCGCCGGG TTGATCTTATTTCATCGGATCGTGACCCCAGCCCCGCCGGG < 41bp 1 0.518625414318075 1 0.390009582042694 experiment 0.962749171363851 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643011 chr1:109643003 . . 0 13 hm5C_associated_SNPs_22306 0 0 1 1 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2365 chr1 109643003 109643003 1 + G C ESCA 109643018 + 109642998 109643038 41 TATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCC TATTTCATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCC < 41bp 1 0.338923836018433 1 0.337153613567352 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643018 chr1:109643003 . . 0 6 hm5C_associated_SNPs_22307 0 0 1 1 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2366 chr1 109643003 109643003 1 + G C ESCA 109643019 + 109642999 109643039 41 ATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCG ATTTCATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCG < 41bp 1 0.581992388636385 1 0.339597940444946 experiment 0.83601522272723 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643019 chr1:109643003 . . 0 5 hm5C_associated_SNPs_22308 0 0 1 1 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2367 chr1 109643003 109643003 1 + G C ESCA 109643023 + 109643003 109643043 41 GATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT CATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT < 41bp 1 0.303028341433566 1 0.135653018951416 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643023 chr1:109643003 . . 0 1 hm5C_associated_SNPs_22309 0 0 1 1 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2368 chrX 53114916 53114916 1 + C G ESCA 53114930 + 53114910 53114950 41 ACAATTCATGACATCAAGATCTCTGACTTCATGGAGACCAC ACAATTGATGACATCAAGATCTCTGACTTCATGGAGACCAC < 41bp 1 0.446772069161873 1 0.314709007740021 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53114930 chrX:53114916 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_22311 0 0 1 1 53114899 53114921 mRNA hsa-miR-433 TSPYL2 miRanda miRanda
2369 chr20 57480483 57480483 1 + C T ESCA 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGAGTGTGTGCCTGCTACGAACGCTCCAACGA < 41bp 1 0.521042189273757 1 0.36413511633873 experiment 0.957915621452485 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480483 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_22312 0 0 1 2 57480471 57480493 mRNA hsa-miR-15a GNAS miRanda miRanda
2370 chr20 57480483 57480483 1 + C T ESCA 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGAGTGTGTGCCTGCTACGAACGCTCCAACGA < 41bp 1 0.521042189273757 1 0.36413511633873 experiment 0.957915621452485 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480483 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_22312 0 0 1 2 57480471 57480493 mRNA hsa-miR-16 GNAS miRanda miRanda
2371 chr1 109643014 109643014 1 + G A ESCA 109642996 + 109642976 109643016 41 CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTGAC CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTAAC < 41bp 1 0.220684252098262 1 0.0240156650543213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642996 chr1:109643014 . . 0 39 hm5C_associated_SNPs_22356 0 0 1 5 109643009 109643029 lncRNA hsa-miR-1908-5p AL356488.2 miRanda starBase2
2372 chr1 109643014 109643014 1 + G A ESCA 109642996 + 109642976 109643016 41 CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTGAC CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTAAC < 41bp 1 0.220684252098262 1 0.0240156650543213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642996 chr1:109643014 . . 0 39 hm5C_associated_SNPs_22356 0 0 1 5 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2373 chr1 109643014 109643014 1 + G A ESCA 109642996 + 109642976 109643016 41 CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTGAC CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTAAC < 41bp 1 0.220684252098262 1 0.0240156650543213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642996 chr1:109643014 . . 0 39 hm5C_associated_SNPs_22356 0 0 1 5 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2374 chr1 109643014 109643014 1 + G A ESCA 109642996 + 109642976 109643016 41 CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTGAC CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTAAC < 41bp 1 0.220684252098262 1 0.0240156650543213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642996 chr1:109643014 . . 0 39 hm5C_associated_SNPs_22356 0 0 1 5 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2375 chr1 109643014 109643014 1 + G A ESCA 109642996 + 109642976 109643016 41 CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTGAC CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTAAC < 41bp 1 0.220684252098262 1 0.0240156650543213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642996 chr1:109643014 . . 0 39 hm5C_associated_SNPs_22356 0 0 1 5 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2376 chr1 109643014 109643014 1 + G A ESCA 109643006 + 109642986 109643026 41 ACACTTTGATCTTATTTGATCGGATCGTGACCCCAGCCCCG ACACTTTGATCTTATTTGATCGGATCGTAACCCCAGCCCCG < 41bp 1 0.516552904794701 1 0.458073079586029 experiment 0.966894190410598 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643006 chr1:109643014 . . 0 29 hm5C_associated_SNPs_22357 0 0 1 5 109643009 109643029 lncRNA hsa-miR-1908-5p AL356488.2 miRanda starBase2
2377 chr1 109643014 109643014 1 + G A ESCA 109643006 + 109642986 109643026 41 ACACTTTGATCTTATTTGATCGGATCGTGACCCCAGCCCCG ACACTTTGATCTTATTTGATCGGATCGTAACCCCAGCCCCG < 41bp 1 0.516552904794701 1 0.458073079586029 experiment 0.966894190410598 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643006 chr1:109643014 . . 0 29 hm5C_associated_SNPs_22357 0 0 1 5 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2378 chr1 109643014 109643014 1 + G A ESCA 109643006 + 109642986 109643026 41 ACACTTTGATCTTATTTGATCGGATCGTGACCCCAGCCCCG ACACTTTGATCTTATTTGATCGGATCGTAACCCCAGCCCCG < 41bp 1 0.516552904794701 1 0.458073079586029 experiment 0.966894190410598 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643006 chr1:109643014 . . 0 29 hm5C_associated_SNPs_22357 0 0 1 5 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2379 chr1 109643014 109643014 1 + G A ESCA 109643006 + 109642986 109643026 41 ACACTTTGATCTTATTTGATCGGATCGTGACCCCAGCCCCG ACACTTTGATCTTATTTGATCGGATCGTAACCCCAGCCCCG < 41bp 1 0.516552904794701 1 0.458073079586029 experiment 0.966894190410598 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643006 chr1:109643014 . . 0 29 hm5C_associated_SNPs_22357 0 0 1 5 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2380 chr1 109643014 109643014 1 + G A ESCA 109643006 + 109642986 109643026 41 ACACTTTGATCTTATTTGATCGGATCGTGACCCCAGCCCCG ACACTTTGATCTTATTTGATCGGATCGTAACCCCAGCCCCG < 41bp 1 0.516552904794701 1 0.458073079586029 experiment 0.966894190410598 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643006 chr1:109643014 . . 0 29 hm5C_associated_SNPs_22357 0 0 1 5 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2381 chr1 109643014 109643014 1 + G A ESCA 109643011 + 109642991 109643031 41 TTGATCTTATTTGATCGGATCGTGACCCCAGCCCCGCCGGG TTGATCTTATTTGATCGGATCGTAACCCCAGCCCCGCCGGG < 41bp 1 0.323185275699469 1 0.136850923299789 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643011 chr1:109643014 . . 0 24 hm5C_associated_SNPs_22358 0 0 1 5 109643009 109643029 lncRNA hsa-miR-1908-5p AL356488.2 miRanda starBase2
2382 chr1 109643014 109643014 1 + G A ESCA 109643011 + 109642991 109643031 41 TTGATCTTATTTGATCGGATCGTGACCCCAGCCCCGCCGGG TTGATCTTATTTGATCGGATCGTAACCCCAGCCCCGCCGGG < 41bp 1 0.323185275699469 1 0.136850923299789 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643011 chr1:109643014 . . 0 24 hm5C_associated_SNPs_22358 0 0 1 5 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2383 chr1 109643014 109643014 1 + G A ESCA 109643011 + 109642991 109643031 41 TTGATCTTATTTGATCGGATCGTGACCCCAGCCCCGCCGGG TTGATCTTATTTGATCGGATCGTAACCCCAGCCCCGCCGGG < 41bp 1 0.323185275699469 1 0.136850923299789 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643011 chr1:109643014 . . 0 24 hm5C_associated_SNPs_22358 0 0 1 5 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2384 chr1 109643014 109643014 1 + G A ESCA 109643011 + 109642991 109643031 41 TTGATCTTATTTGATCGGATCGTGACCCCAGCCCCGCCGGG TTGATCTTATTTGATCGGATCGTAACCCCAGCCCCGCCGGG < 41bp 1 0.323185275699469 1 0.136850923299789 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643011 chr1:109643014 . . 0 24 hm5C_associated_SNPs_22358 0 0 1 5 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2385 chr1 109643014 109643014 1 + G A ESCA 109643011 + 109642991 109643031 41 TTGATCTTATTTGATCGGATCGTGACCCCAGCCCCGCCGGG TTGATCTTATTTGATCGGATCGTAACCCCAGCCCCGCCGGG < 41bp 1 0.323185275699469 1 0.136850923299789 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643011 chr1:109643014 . . 0 24 hm5C_associated_SNPs_22358 0 0 1 5 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2386 chr1 109643014 109643014 1 + G A ESCA 109643018 + 109642998 109643038 41 TATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCC TATTTGATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCC < 41bp 1 0.399214092244818 1 0.400532275438309 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643018 chr1:109643014 . . 0 17 hm5C_associated_SNPs_22359 0 0 1 5 109643009 109643029 lncRNA hsa-miR-1908-5p AL356488.2 miRanda starBase2
2387 chr1 109643014 109643014 1 + G A ESCA 109643018 + 109642998 109643038 41 TATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCC TATTTGATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCC < 41bp 1 0.399214092244818 1 0.400532275438309 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643018 chr1:109643014 . . 0 17 hm5C_associated_SNPs_22359 0 0 1 5 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2388 chr1 109643014 109643014 1 + G A ESCA 109643018 + 109642998 109643038 41 TATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCC TATTTGATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCC < 41bp 1 0.399214092244818 1 0.400532275438309 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643018 chr1:109643014 . . 0 17 hm5C_associated_SNPs_22359 0 0 1 5 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2389 chr1 109643014 109643014 1 + G A ESCA 109643018 + 109642998 109643038 41 TATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCC TATTTGATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCC < 41bp 1 0.399214092244818 1 0.400532275438309 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643018 chr1:109643014 . . 0 17 hm5C_associated_SNPs_22359 0 0 1 5 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2390 chr1 109643014 109643014 1 + G A ESCA 109643018 + 109642998 109643038 41 TATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCC TATTTGATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCC < 41bp 1 0.399214092244818 1 0.400532275438309 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643018 chr1:109643014 . . 0 17 hm5C_associated_SNPs_22359 0 0 1 5 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2391 chr1 109643014 109643014 1 + G A ESCA 109643019 + 109642999 109643039 41 ATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCG ATTTGATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCG < 41bp 1 0.590035124499388 1 0.405888706445694 experiment 0.819929751001224 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643019 chr1:109643014 . . 0 16 hm5C_associated_SNPs_22360 0 0 1 5 109643009 109643029 lncRNA hsa-miR-1908-5p AL356488.2 miRanda starBase2
2392 chr1 109643014 109643014 1 + G A ESCA 109643019 + 109642999 109643039 41 ATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCG ATTTGATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCG < 41bp 1 0.590035124499388 1 0.405888706445694 experiment 0.819929751001224 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643019 chr1:109643014 . . 0 16 hm5C_associated_SNPs_22360 0 0 1 5 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2393 chr1 109643014 109643014 1 + G A ESCA 109643019 + 109642999 109643039 41 ATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCG ATTTGATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCG < 41bp 1 0.590035124499388 1 0.405888706445694 experiment 0.819929751001224 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643019 chr1:109643014 . . 0 16 hm5C_associated_SNPs_22360 0 0 1 5 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2394 chr1 109643014 109643014 1 + G A ESCA 109643019 + 109642999 109643039 41 ATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCG ATTTGATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCG < 41bp 1 0.590035124499388 1 0.405888706445694 experiment 0.819929751001224 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643019 chr1:109643014 . . 0 16 hm5C_associated_SNPs_22360 0 0 1 5 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2395 chr1 109643014 109643014 1 + G A ESCA 109643019 + 109642999 109643039 41 ATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCG ATTTGATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCG < 41bp 1 0.590035124499388 1 0.405888706445694 experiment 0.819929751001224 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643019 chr1:109643014 . . 0 16 hm5C_associated_SNPs_22360 0 0 1 5 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2396 chr1 109643014 109643014 1 + G A ESCA 109643023 + 109643003 109643043 41 GATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT GATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAAT < 41bp 1 0.29634080338266 1 0.206756502389908 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643023 chr1:109643014 . . 0 12 hm5C_associated_SNPs_22361 0 0 1 5 109643009 109643029 lncRNA hsa-miR-1908-5p AL356488.2 miRanda starBase2
2397 chr1 109643014 109643014 1 + G A ESCA 109643023 + 109643003 109643043 41 GATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT GATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAAT < 41bp 1 0.29634080338266 1 0.206756502389908 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643023 chr1:109643014 . . 0 12 hm5C_associated_SNPs_22361 0 0 1 5 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2398 chr1 109643014 109643014 1 + G A ESCA 109643023 + 109643003 109643043 41 GATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT GATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAAT < 41bp 1 0.29634080338266 1 0.206756502389908 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643023 chr1:109643014 . . 0 12 hm5C_associated_SNPs_22361 0 0 1 5 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2399 chr1 109643014 109643014 1 + G A ESCA 109643023 + 109643003 109643043 41 GATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT GATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAAT < 41bp 1 0.29634080338266 1 0.206756502389908 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643023 chr1:109643014 . . 0 12 hm5C_associated_SNPs_22361 0 0 1 5 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2400 chr1 109643014 109643014 1 + G A ESCA 109643023 + 109643003 109643043 41 GATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT GATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAAT < 41bp 1 0.29634080338266 1 0.206756502389908 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643023 chr1:109643014 . . 0 12 hm5C_associated_SNPs_22361 0 0 1 5 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2401 chr1 109643014 109643014 1 + G A ESCA 109643025 + 109643005 109643045 41 TCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGA TCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGA < 41bp 1 0.650392150887186 1 0.466456562280655 experiment 0.699215698225627 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643025 chr1:109643014 . . 0 10 hm5C_associated_SNPs_22362 0 0 1 5 109643009 109643029 lncRNA hsa-miR-1908-5p AL356488.2 miRanda starBase2
2402 chr1 109643014 109643014 1 + G A ESCA 109643025 + 109643005 109643045 41 TCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGA TCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGA < 41bp 1 0.650392150887186 1 0.466456562280655 experiment 0.699215698225627 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643025 chr1:109643014 . . 0 10 hm5C_associated_SNPs_22362 0 0 1 5 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2403 chr1 109643014 109643014 1 + G A ESCA 109643025 + 109643005 109643045 41 TCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGA TCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGA < 41bp 1 0.650392150887186 1 0.466456562280655 experiment 0.699215698225627 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643025 chr1:109643014 . . 0 10 hm5C_associated_SNPs_22362 0 0 1 5 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2404 chr1 109643014 109643014 1 + G A ESCA 109643025 + 109643005 109643045 41 TCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGA TCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGA < 41bp 1 0.650392150887186 1 0.466456562280655 experiment 0.699215698225627 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643025 chr1:109643014 . . 0 10 hm5C_associated_SNPs_22362 0 0 1 5 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2405 chr1 109643014 109643014 1 + G A ESCA 109643025 + 109643005 109643045 41 TCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGA TCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGA < 41bp 1 0.650392150887186 1 0.466456562280655 experiment 0.699215698225627 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643025 chr1:109643014 . . 0 10 hm5C_associated_SNPs_22362 0 0 1 5 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2406 chr1 109643014 109643014 1 + G A ESCA 109643027 + 109643007 109643047 41 GGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA GGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA < 41bp 1 0.356816960265359 1 0.355398207902908 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643027 chr1:109643014 . . 0 8 hm5C_associated_SNPs_22363 0 0 1 5 109643009 109643029 lncRNA hsa-miR-1908-5p AL356488.2 miRanda starBase2
2407 chr1 109643014 109643014 1 + G A ESCA 109643027 + 109643007 109643047 41 GGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA GGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA < 41bp 1 0.356816960265359 1 0.355398207902908 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643027 chr1:109643014 . . 0 8 hm5C_associated_SNPs_22363 0 0 1 5 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2408 chr1 109643014 109643014 1 + G A ESCA 109643027 + 109643007 109643047 41 GGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA GGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA < 41bp 1 0.356816960265359 1 0.355398207902908 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643027 chr1:109643014 . . 0 8 hm5C_associated_SNPs_22363 0 0 1 5 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2409 chr1 109643014 109643014 1 + G A ESCA 109643027 + 109643007 109643047 41 GGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA GGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA < 41bp 1 0.356816960265359 1 0.355398207902908 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643027 chr1:109643014 . . 0 8 hm5C_associated_SNPs_22363 0 0 1 5 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2410 chr1 109643014 109643014 1 + G A ESCA 109643027 + 109643007 109643047 41 GGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA GGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA < 41bp 1 0.356816960265359 1 0.355398207902908 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643027 chr1:109643014 . . 0 8 hm5C_associated_SNPs_22363 0 0 1 5 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2411 chr1 109643014 109643014 1 + G A ESCA 109643028 + 109643008 109643048 41 GATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA GATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA < 41bp 1 0.608654435115792 1 0.557649970054626 experiment 0.782691129768417 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643028 chr1:109643014 . . 0 7 hm5C_associated_SNPs_22364 0 0 1 5 109643009 109643029 lncRNA hsa-miR-1908-5p AL356488.2 miRanda starBase2
2412 chr1 109643014 109643014 1 + G A ESCA 109643028 + 109643008 109643048 41 GATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA GATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA < 41bp 1 0.608654435115792 1 0.557649970054626 experiment 0.782691129768417 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643028 chr1:109643014 . . 0 7 hm5C_associated_SNPs_22364 0 0 1 5 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2413 chr1 109643014 109643014 1 + G A ESCA 109643028 + 109643008 109643048 41 GATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA GATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA < 41bp 1 0.608654435115792 1 0.557649970054626 experiment 0.782691129768417 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643028 chr1:109643014 . . 0 7 hm5C_associated_SNPs_22364 0 0 1 5 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2414 chr1 109643014 109643014 1 + G A ESCA 109643028 + 109643008 109643048 41 GATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA GATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA < 41bp 1 0.608654435115792 1 0.557649970054626 experiment 0.782691129768417 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643028 chr1:109643014 . . 0 7 hm5C_associated_SNPs_22364 0 0 1 5 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2415 chr1 109643014 109643014 1 + G A ESCA 109643028 + 109643008 109643048 41 GATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA GATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA < 41bp 1 0.608654435115792 1 0.557649970054626 experiment 0.782691129768417 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643028 chr1:109643014 . . 0 7 hm5C_associated_SNPs_22364 0 0 1 5 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2416 chr1 109643014 109643014 1 + G A ESCA 109643033 + 109643013 109643053 41 TGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCT TAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCT < 41bp 1 0.128309046267526 1 0.155891358852386 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643033 chr1:109643014 . . 0 2 hm5C_associated_SNPs_22365 0 0 1 5 109643009 109643029 lncRNA hsa-miR-1908-5p AL356488.2 miRanda starBase2
2417 chr1 109643014 109643014 1 + G A ESCA 109643033 + 109643013 109643053 41 TGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCT TAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCT < 41bp 1 0.128309046267526 1 0.155891358852386 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643033 chr1:109643014 . . 0 2 hm5C_associated_SNPs_22365 0 0 1 5 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2418 chr1 109643014 109643014 1 + G A ESCA 109643033 + 109643013 109643053 41 TGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCT TAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCT < 41bp 1 0.128309046267526 1 0.155891358852386 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643033 chr1:109643014 . . 0 2 hm5C_associated_SNPs_22365 0 0 1 5 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2419 chr1 109643014 109643014 1 + G A ESCA 109643033 + 109643013 109643053 41 TGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCT TAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCT < 41bp 1 0.128309046267526 1 0.155891358852386 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643033 chr1:109643014 . . 0 2 hm5C_associated_SNPs_22365 0 0 1 5 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2420 chr1 109643014 109643014 1 + G A ESCA 109643033 + 109643013 109643053 41 TGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCT TAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCT < 41bp 1 0.128309046267526 1 0.155891358852386 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643033 chr1:109643014 . . 0 2 hm5C_associated_SNPs_22365 0 0 1 5 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2421 chr6 7594065 7594065 1 + T A GBM 7594067 + 7594047 7594087 41 ATTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCAT ATTGAGGAAAATGGGCTAAACCAAAGAAGAAGAGGTACCAT < 41bp 1 0.514977913735632 1 0.394603967666626 experiment 0.970044172528736 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594067 chr6:7594065 stopgain 0.994 1 19 hm5C_associated_SNPs_22399 0 0 1 1 7594050 7594073 mRNA hsa-miR-9 SNRNP48 miRanda miRanda
2422 chr6 7594065 7594065 1 + T A GBM 7594068 + 7594048 7594088 41 TTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCATA TTGAGGAAAATGGGCTAAACCAAAGAAGAAGAGGTACCATA < 41bp 1 0.621469011372945 1 0.662728905677795 experiment 0.75706197725411 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594068 chr6:7594065 stopgain 0.994 1 18 hm5C_associated_SNPs_22400 0 0 1 1 7594050 7594073 mRNA hsa-miR-9 SNRNP48 miRanda miRanda
2423 chr1 47838725 47838725 1 + C T GBM 47838724 + 47838704 47838744 41 CCTTCAAGGATGGAACAAGACCATGGATGGGAAGGCAGATG CCTTCAAGGATGGAACAAGACTATGGATGGGAAGGCAGATG < 41bp 1 0.670887813908961 1 0.0541785061359406 experiment 0.658224372182077 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838724 chr1:47838725 synonymous SNV . 0 22 hm5C_associated_SNPs_22441 0 0 1 2 47838705 47838728 mRNA hsa-miR-135a CMPK1 miRanda miRanda
2424 chr1 47838725 47838725 1 + C T GBM 47838724 + 47838704 47838744 41 CCTTCAAGGATGGAACAAGACCATGGATGGGAAGGCAGATG CCTTCAAGGATGGAACAAGACTATGGATGGGAAGGCAGATG < 41bp 1 0.670887813908961 1 0.0541785061359406 experiment 0.658224372182077 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838724 chr1:47838725 synonymous SNV . 0 22 hm5C_associated_SNPs_22441 0 0 1 2 47838705 47838728 mRNA hsa-miR-135b CMPK1 miRanda miRanda
2425 chr2 217366127 217366127 1 + G A GBM 217366129 + 217366109 217366149 41 GGAGTTGAAAGACCAGTAGACGCTCCTCTACTCTTTGAGAC GGAGTTGAAAGACCAGTAAACGCTCCTCTACTCTTTGAGAC < 41bp 1 0.520091121870764 1 0.206044852733612 experiment 0.959817756258472 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217366129 chr2:217366127 synonymous SNV . 0 19 hm5C_associated_SNPs_22445 0 0 1 1 217366112 217366136 mRNA hsa-miR-28-5p RPL37A miRanda miRanda
2426 chrX 73046529 73046529 1 - C T GBM 73046526 - 73046506 73046546 41 TGGAGGCCCATGACCCAGAACCCAGGAAGGATAGAAGCTTG TGGAGGCCCATGACCCAAAACCCAGGAAGGATAGAAGCTTG < 41bp 1 0.259481290770329 1 0.297316372394562 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046526 chrX:73046529 . . 0 18 hm5C_associated_SNPs_22487 0 0 1 2 73046519 73046540 lncRNA hsa-miR-1343-3p XIST miRanda starBase2
2427 chrX 73046529 73046529 1 - C T GBM 73046526 - 73046506 73046546 41 TGGAGGCCCATGACCCAGAACCCAGGAAGGATAGAAGCTTG TGGAGGCCCATGACCCAAAACCCAGGAAGGATAGAAGCTTG < 41bp 1 0.259481290770329 1 0.297316372394562 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046526 chrX:73046529 . . 0 18 hm5C_associated_SNPs_22487 0 0 1 2 73046519 73046539 lncRNA hsa-miR-6783-3p XIST miRanda starBase2
2428 chrX 73046529 73046529 1 - C T GBM 73046532 - 73046512 73046552 41 GGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAGA GGAATCTGGAGGCCCATGACCCAAAACCCAGGAAGGATAGA < 41bp 1 0.137364137970555 1 0.203184336423874 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046532 chrX:73046529 . . 0 24 hm5C_associated_SNPs_22488 0 0 1 2 73046519 73046540 lncRNA hsa-miR-1343-3p XIST miRanda starBase2
2429 chrX 73046529 73046529 1 - C T GBM 73046532 - 73046512 73046552 41 GGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAGA GGAATCTGGAGGCCCATGACCCAAAACCCAGGAAGGATAGA < 41bp 1 0.137364137970555 1 0.203184336423874 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046532 chrX:73046529 . . 0 24 hm5C_associated_SNPs_22488 0 0 1 2 73046519 73046539 lncRNA hsa-miR-6783-3p XIST miRanda starBase2
2430 chrX 73046529 73046529 1 - C T GBM 73046533 - 73046513 73046553 41 CGGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAG CGGAATCTGGAGGCCCATGACCCAAAACCCAGGAAGGATAG < 41bp 1 0.35908009177258 1 0.361499220132828 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046533 chrX:73046529 . . 0 25 hm5C_associated_SNPs_22489 0 0 1 2 73046519 73046540 lncRNA hsa-miR-1343-3p XIST miRanda starBase2
2431 chrX 73046529 73046529 1 - C T GBM 73046533 - 73046513 73046553 41 CGGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAG CGGAATCTGGAGGCCCATGACCCAAAACCCAGGAAGGATAG < 41bp 1 0.35908009177258 1 0.361499220132828 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046533 chrX:73046529 . . 0 25 hm5C_associated_SNPs_22489 0 0 1 2 73046519 73046539 lncRNA hsa-miR-6783-3p XIST miRanda starBase2
2432 chrX 73046529 73046529 1 - C T GBM 73046539 - 73046519 73046559 41 AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA AACGGCCGGAATCTGGAGGCCCATGACCCAAAACCCAGGAA < 41bp 1 0.0834940281015657 1 0.204696625471115 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046539 chrX:73046529 . . 0 31 hm5C_associated_SNPs_22490 0 0 1 2 73046519 73046540 lncRNA hsa-miR-1343-3p XIST miRanda starBase2
2433 chrX 73046529 73046529 1 - C T GBM 73046539 - 73046519 73046559 41 AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA AACGGCCGGAATCTGGAGGCCCATGACCCAAAACCCAGGAA < 41bp 1 0.0834940281015657 1 0.204696625471115 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046539 chrX:73046529 . . 0 31 hm5C_associated_SNPs_22490 0 0 1 2 73046519 73046539 lncRNA hsa-miR-6783-3p XIST miRanda starBase2
2434 chr5 125820109 125820109 1 + A C GBM 125820118 + 125820098 125820138 41 CCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGG CCATGCGACAGCATCCCAAACAGTTCTGAATGTCTCCAAGG < 41bp 1 0.322108428886175 1 0.108068615198135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125820118 chr5:125820109 nonsynonymous SNV 0.962 2 12 hm5C_associated_SNPs_22492 0 0 0 4 125820109 125820131 mRNA hsa-miR-181a GRAMD3 miRanda miRanda
2435 chr5 125820109 125820109 1 + A C GBM 125820118 + 125820098 125820138 41 CCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGG CCATGCGACAGCATCCCAAACAGTTCTGAATGTCTCCAAGG < 41bp 1 0.322108428886175 1 0.108068615198135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125820118 chr5:125820109 nonsynonymous SNV 0.962 2 12 hm5C_associated_SNPs_22492 0 0 0 4 125820109 125820131 mRNA hsa-miR-181b GRAMD3 miRanda miRanda
2436 chr5 125820109 125820109 1 + A C GBM 125820118 + 125820098 125820138 41 CCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGG CCATGCGACAGCATCCCAAACAGTTCTGAATGTCTCCAAGG < 41bp 1 0.322108428886175 1 0.108068615198135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125820118 chr5:125820109 nonsynonymous SNV 0.962 2 12 hm5C_associated_SNPs_22492 0 0 0 4 125820109 125820131 mRNA hsa-miR-181c GRAMD3 miRanda miRanda
2437 chr5 125820109 125820109 1 + A C GBM 125820118 + 125820098 125820138 41 CCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGG CCATGCGACAGCATCCCAAACAGTTCTGAATGTCTCCAAGG < 41bp 1 0.322108428886175 1 0.108068615198135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125820118 chr5:125820109 nonsynonymous SNV 0.962 2 12 hm5C_associated_SNPs_22492 0 0 0 4 125820109 125820131 mRNA hsa-miR-181d GRAMD3 miRanda miRanda
2438 chr15 93486285 93486285 1 + G A GBM 93486284 + 93486264 93486304 41 AACTTCAAGAAAAAAGAGGACGAAATCAAACAATGGTATAT AACTTCAAGAAAAAAGAGGACAAAATCAAACAATGGTATAT < 41bp 1 0.161457254264217 1 0.263472974300385 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93486284 chr15:93486285 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_22494 0 0 1 3 93486267 93486288 mRNA hsa-miR-133a CHD2 miRanda miRanda
2439 chr15 93486285 93486285 1 + G A GBM 93486284 + 93486264 93486304 41 AACTTCAAGAAAAAAGAGGACGAAATCAAACAATGGTATAT AACTTCAAGAAAAAAGAGGACAAAATCAAACAATGGTATAT < 41bp 1 0.161457254264217 1 0.263472974300385 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93486284 chr15:93486285 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_22494 0 0 1 3 93486267 93486288 mRNA hsa-miR-133b CHD2 miRanda miRanda
2440 chr15 93486285 93486285 1 + G A GBM 93486284 + 93486264 93486304 41 AACTTCAAGAAAAAAGAGGACGAAATCAAACAATGGTATAT AACTTCAAGAAAAAAGAGGACAAAATCAAACAATGGTATAT < 41bp 1 0.161457254264217 1 0.263472974300385 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93486284 chr15:93486285 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_22494 0 0 1 3 93486271 93486292 mRNA hsa-miR-876-5p CHD2 miRanda miRanda
2441 chr3 14487247 14487247 1 + T G GBM 14487265 + 14487245 14487285 41 TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT TTGATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT < 41bp 1 0.192582280105612 1 0.382622539997101 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487265 chr3:14487247 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_22501 0 0 1 1 14487244 14487265 mRNA hsa-miR-150 SLC6A6 miRanda miRanda
2442 chr10 1118122 1118122 1 + G A GBM 1118127 + 1118107 1118147 41 AAGCGCAAGTTGTTCGACTGCTCGCCAAACAAAACAGAAGC AAGCGCAAGTTGTTCAACTGCTCGCCAAACAAAACAGAAGC < 41bp 1 0.276636268710254 1 0.531671583652496 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR37 ENSG00000047056 CDS Human protein_coding chr10:1118127 chr10:1118122 synonymous SNV . 0 16 hm5C_associated_SNPs_22509 0 0 1 1 1118109 1118129 mRNA hsa-miR-503 WDR37 miRanda miRanda
2443 chr2 29344297 29344297 1 + C T GBM 29344282 + 29344262 29344302 41 TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTG TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATTCTTTG < 41bp 1 0.0576261387234818 1 0.0858077108860016 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29344282 chr2:29344297 nonsynonymous SNV 0.593 0 36 hm5C_associated_SNPs_22522 0 0 1 1 29344278 29344299 mRNA hsa-miR-876-5p CLIP4 miRanda miRanda
2444 chrX 73044958 73044958 1 - T C GBM 73044939 - 73044919 73044959 41 TACCATGCTGGGTGCTAGAGCTACCAAAGGGGGAAAAGTAT TGCCATGCTGGGTGCTAGAGCTACCAAAGGGGGAAAAGTAT < 41bp 1 0.0933831799302323 1 0.197257876396179 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044939 chrX:73044958 . . 0 2 hm5C_associated_SNPs_22539 0 0 1 2 73044939 73044959 lncRNA hsa-miR-1251-5p XIST miRanda starBase2
2445 chrX 73044958 73044958 1 - T C GBM 73044939 - 73044919 73044959 41 TACCATGCTGGGTGCTAGAGCTACCAAAGGGGGAAAAGTAT TGCCATGCTGGGTGCTAGAGCTACCAAAGGGGGAAAAGTAT < 41bp 1 0.0933831799302323 1 0.197257876396179 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044939 chrX:73044958 . . 0 2 hm5C_associated_SNPs_22539 0 0 1 2 73044948 73044967 lncRNA hsa-miR-338-3p XIST miRanda starBase2
2446 chrX 73044958 73044958 1 - T C GBM 73044945 - 73044925 73044965 41 GCCAGATACCATGCTGGGTGCTAGAGCTACCAAAGGGGGAA GCCAGATGCCATGCTGGGTGCTAGAGCTACCAAAGGGGGAA < 41bp 1 0.498987958036709 1 0.295429050922394 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044945 chrX:73044958 . . 0 8 hm5C_associated_SNPs_22540 0 0 1 2 73044939 73044959 lncRNA hsa-miR-1251-5p XIST miRanda starBase2
2447 chrX 73044958 73044958 1 - T C GBM 73044945 - 73044925 73044965 41 GCCAGATACCATGCTGGGTGCTAGAGCTACCAAAGGGGGAA GCCAGATGCCATGCTGGGTGCTAGAGCTACCAAAGGGGGAA < 41bp 1 0.498987958036709 1 0.295429050922394 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044945 chrX:73044958 . . 0 8 hm5C_associated_SNPs_22540 0 0 1 2 73044948 73044967 lncRNA hsa-miR-338-3p XIST miRanda starBase2
2448 chrX 73044561 73044561 1 - C T GBM 73044553 - 73044533 73044573 41 GAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAATGT GAGATCCAGACCAAAAGTCACTTAATTCAGCTTGCGAATGT < 41bp 1 0.118190403940199 1 0.0389741361141205 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044553 chrX:73044561 . . 0 13 hm5C_associated_SNPs_22557 0 0 1 2 73044552 73044573 lncRNA hsa-miR-3164 XIST miRanda starBase2
2449 chrX 73044561 73044561 1 - C T GBM 73044553 - 73044533 73044573 41 GAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAATGT GAGATCCAGACCAAAAGTCACTTAATTCAGCTTGCGAATGT < 41bp 1 0.118190403940199 1 0.0389741361141205 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044553 chrX:73044561 . . 0 13 hm5C_associated_SNPs_22557 0 0 1 2 73044552 73044573 lncRNA hsa-miR-6820-3p XIST miRanda starBase2
2450 chrX 73044561 73044561 1 - C T GBM 73044555 - 73044535 73044575 41 GTGAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAAT GTGAGATCCAGACCAAAAGTCACTTAATTCAGCTTGCGAAT < 41bp 1 0.0785083382263474 1 0.049656093120575 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044555 chrX:73044561 . . 0 15 hm5C_associated_SNPs_22558 0 0 1 2 73044552 73044573 lncRNA hsa-miR-3164 XIST miRanda starBase2
2451 chrX 73044561 73044561 1 - C T GBM 73044555 - 73044535 73044575 41 GTGAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAAT GTGAGATCCAGACCAAAAGTCACTTAATTCAGCTTGCGAAT < 41bp 1 0.0785083382263474 1 0.049656093120575 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044555 chrX:73044561 . . 0 15 hm5C_associated_SNPs_22558 0 0 1 2 73044552 73044573 lncRNA hsa-miR-6820-3p XIST miRanda starBase2
2452 chrX 73044561 73044561 1 - C T GBM 73044568 - 73044548 73044588 41 TGAAGTAATAGATGTGAGATCCAGACCGAAAGTCACTTAAT TGAAGTAATAGATGTGAGATCCAGACCAAAAGTCACTTAAT < 41bp 1 0.267520391489238 1 0.768760442733765 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044568 chrX:73044561 . . 0 28 hm5C_associated_SNPs_22559 0 0 1 2 73044552 73044573 lncRNA hsa-miR-3164 XIST miRanda starBase2
2453 chrX 73044561 73044561 1 - C T GBM 73044568 - 73044548 73044588 41 TGAAGTAATAGATGTGAGATCCAGACCGAAAGTCACTTAAT TGAAGTAATAGATGTGAGATCCAGACCAAAAGTCACTTAAT < 41bp 1 0.267520391489238 1 0.768760442733765 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044568 chrX:73044561 . . 0 28 hm5C_associated_SNPs_22559 0 0 1 2 73044552 73044573 lncRNA hsa-miR-6820-3p XIST miRanda starBase2
2454 chr17 73780945 73780945 1 + G T GBM 73780936 + 73780916 73780956 41 ACTGAATAATAAAAGGGGAGCGGCGAAGAGGCAGGAAGACA ACTGAATAATAAAAGGGGAGCGGCGAAGATGCAGGAAGACA < 41bp 1 0.520829553719639 1 0.417326390743256 experiment 0.958340892560722 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73780936 chr17:73780945 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_22561 0 0 1 2 73780942 73780964 mRNA hsa-miR-135a UNK miRanda miRanda
2455 chr17 73780945 73780945 1 + G T GBM 73780936 + 73780916 73780956 41 ACTGAATAATAAAAGGGGAGCGGCGAAGAGGCAGGAAGACA ACTGAATAATAAAAGGGGAGCGGCGAAGATGCAGGAAGACA < 41bp 1 0.520829553719639 1 0.417326390743256 experiment 0.958340892560722 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73780936 chr17:73780945 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_22561 0 0 1 2 73780942 73780964 mRNA hsa-miR-135b UNK miRanda miRanda
2456 chr4 52740458 52740458 1 + C A GBM 52740449 + 52740429 52740469 41 TTTTGTAGGAAGTCTGCGGTCTTGCAGTTCTTCAGACTGCT TTTTGTAGGAAGTCTGCGGTCTTGCAGTTATTCAGACTGCT < 41bp 1 0.223902196340122 1 0.0580459535121918 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DCUN1D4 ENSG00000109184 CDS Human protein_coding chr4:52740449 chr4:52740458 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_22591 0 0 1 1 52740450 52740476 mRNA hsa-miR-340 DCUN1D4 miRanda miRanda
2457 chr11 65268899 65268899 1 + G T GBM 65268891 + 65268871 65268911 41 GAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGCTGGTA GAGGTCTGTGGAAGAGATGTCCATTGGATAAATGGCTGGTA < 41bp 1 0.156230296322389 1 0.395190715789795 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268891 chr11:65268899 . . 0 29 hm5C_associated_SNPs_22601 0 0 1 2 65268878 65268901 lncRNA hsa-miR-515-5p MALAT1 miRanda starBase2
2458 chr11 65268899 65268899 1 + G T GBM 65268891 + 65268871 65268911 41 GAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGCTGGTA GAGGTCTGTGGAAGAGATGTCCATTGGATAAATGGCTGGTA < 41bp 1 0.156230296322389 1 0.395190715789795 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268891 chr11:65268899 . . 0 29 hm5C_associated_SNPs_22601 0 0 1 2 65268880 65268901 lncRNA hsa-miR-519e-5p MALAT1 miRanda starBase2
2459 chr4 53579475 53579475 1 + C A GBM 53579455 + 53579435 53579475 41 CCAGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTC CCAGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTA < 41bp 1 0.336365986856547 1 0.228628814220428 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579455 chr4:53579475 . . 0 41 hm5C_associated_SNPs_22615 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
2460 chr4 53579475 53579475 1 + C A GBM 53579455 + 53579435 53579475 41 CCAGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTC CCAGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTA < 41bp 1 0.336365986856547 1 0.228628814220428 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579455 chr4:53579475 . . 0 41 hm5C_associated_SNPs_22615 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
2461 chr4 53579475 53579475 1 + C A GBM 53579457 + 53579437 53579477 41 AGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTCTC AGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTATC < 41bp 1 0.666717896666938 1 0.571459293365479 experiment 0.666564206666125 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579457 chr4:53579475 . . 0 39 hm5C_associated_SNPs_22616 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
2462 chr4 53579475 53579475 1 + C A GBM 53579457 + 53579437 53579477 41 AGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTCTC AGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTATC < 41bp 1 0.666717896666938 1 0.571459293365479 experiment 0.666564206666125 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579457 chr4:53579475 . . 0 39 hm5C_associated_SNPs_22616 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
2463 chr4 53579475 53579475 1 + C A GBM 53579477 + 53579457 53579497 41 CAGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGA CAGAAGGGTAAAGTAAGTATCCATAAAACCCAGAGAAGAGA < 41bp 1 0.155381207631512 1 0.0879610776901245 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579477 chr4:53579475 . . 0 19 hm5C_associated_SNPs_22617 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
2464 chr4 53579475 53579475 1 + C A GBM 53579477 + 53579457 53579497 41 CAGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGA CAGAAGGGTAAAGTAAGTATCCATAAAACCCAGAGAAGAGA < 41bp 1 0.155381207631512 1 0.0879610776901245 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579477 chr4:53579475 . . 0 19 hm5C_associated_SNPs_22617 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
2465 chr4 53579475 53579475 1 + C A GBM 53579478 + 53579458 53579498 41 AGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGAC AGAAGGGTAAAGTAAGTATCCATAAAACCCAGAGAAGAGAC < 41bp 1 0.392518314128283 1 0.269105076789856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579478 chr4:53579475 . . 0 18 hm5C_associated_SNPs_22618 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
2466 chr4 53579475 53579475 1 + C A GBM 53579478 + 53579458 53579498 41 AGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGAC AGAAGGGTAAAGTAAGTATCCATAAAACCCAGAGAAGAGAC < 41bp 1 0.392518314128283 1 0.269105076789856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579478 chr4:53579475 . . 0 18 hm5C_associated_SNPs_22618 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
2467 chr4 53579475 53579475 1 + C A GBM 53579485 + 53579465 53579505 41 TAAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAG TAAAGTAAGTATCCATAAAACCCAGAGAAGAGACTGGAAAG < 41bp 1 0.334111618491323 1 0.208082050085068 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579485 chr4:53579475 . . 0 11 hm5C_associated_SNPs_22619 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
2468 chr4 53579475 53579475 1 + C A GBM 53579485 + 53579465 53579505 41 TAAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAG TAAAGTAAGTATCCATAAAACCCAGAGAAGAGACTGGAAAG < 41bp 1 0.334111618491323 1 0.208082050085068 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579485 chr4:53579475 . . 0 11 hm5C_associated_SNPs_22619 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
2469 chr4 53579475 53579475 1 + C A GBM 53579486 + 53579466 53579506 41 AAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGC AAAGTAAGTATCCATAAAACCCAGAGAAGAGACTGGAAAGC < 41bp 1 0.522102201151858 1 0.153190612792969 experiment 0.955795597696285 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579486 chr4:53579475 . . 0 10 hm5C_associated_SNPs_22620 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
2470 chr4 53579475 53579475 1 + C A GBM 53579486 + 53579466 53579506 41 AAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGC AAAGTAAGTATCCATAAAACCCAGAGAAGAGACTGGAAAGC < 41bp 1 0.522102201151858 1 0.153190612792969 experiment 0.955795597696285 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579486 chr4:53579475 . . 0 10 hm5C_associated_SNPs_22620 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
2471 chr4 53579475 53579475 1 + C A GBM 53579487 + 53579467 53579507 41 AAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGCT AAGTAAGTATCCATAAAACCCAGAGAAGAGACTGGAAAGCT < 41bp 1 0.399826294720831 1 0.421153753995895 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579487 chr4:53579475 . . 0 9 hm5C_associated_SNPs_22621 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
2472 chr4 53579475 53579475 1 + C A GBM 53579487 + 53579467 53579507 41 AAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGCT AAGTAAGTATCCATAAAACCCAGAGAAGAGACTGGAAAGCT < 41bp 1 0.399826294720831 1 0.421153753995895 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579487 chr4:53579475 . . 0 9 hm5C_associated_SNPs_22621 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
2473 chr7 135333182 135333182 1 + G T GBM 135333200 + 135333180 135333220 41 GAGAATCACTACAAAAGAAACTTCTGGACATTGAAGGATTA GATAATCACTACAAAAGAAACTTCTGGACATTGAAGGATTA < 41bp 1 0.0759965632164197 1 0.181997925043106 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135333200 chr7:135333182 stopgain 1.000 1 3 hm5C_associated_SNPs_22643 0 0 1 1 135333169 135333192 mRNA hsa-miR-142-3p NUP205 miRanda miRanda
2474 chr19 10886491 10886491 1 + G A GBM 10886497 + 10886477 10886517 41 CAGTTCATCAGCCGGGAGAGCAGCCTCATTCTGGCTGTCAC CAGTTCATCAGCCGAGAGAGCAGCCTCATTCTGGCTGTCAC < 41bp 1 0.216349751467003 1 0.122377097606659 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886497 chr19:10886491 synonymous SNV . 0 15 hm5C_associated_SNPs_22693 0 0 1 1 10886477 10886504 mRNA hsa-miR-485-5p DNM2 miRanda miRanda
2475 chr9 35660940 35660940 1 + C T GBM 35660941 + 35660921 35660961 41 ATCTCTCCCCACACAGAGGCCAGCAGACCTCTTCCTGAGGA ATCTCTCCCCACACAGAGGTCAGCAGACCTCTTCCTGAGGA < 41bp 1 0.771617563356243 1 0.218071728944778 experiment 0.456764873287515 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660941 chr9:35660940 nonsynonymous SNV 0.898 0 20 hm5C_associated_SNPs_22705 0 0 0 1 35660921 35660944 mRNA hsa-miR-149 CCDC107 miRanda miRanda
2476 chr2 9621457 9621457 1 + C T GBM 9621454 + 9621434 9621474 41 CATTCCCCTGGAGGAGTACGCTGCGAACCTAAAGAGCATGG CATTCCCCTGGAGGAGTACGCTGTGAACCTAAAGAGCATGG < 41bp 1 0.672363570411505 1 0.176544576883316 experiment 0.65527285917699 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IAH1 ENSG00000134330 CDS Human protein_coding chr2:9621454 chr2:9621457 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_22717 0 0 1 1 9621447 9621468 mRNA hsa-miR-9 IAH1 miRanda miRanda
2477 chr10 115489209 115489209 1 + G C GBM 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGCCAGGCACTTTGACTCTCAGT < 41bp 1 0.327874875052391 1 0.263132154941559 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489209 nonsynonymous SNV 0.991 4 34 hm5C_associated_SNPs_22753 0 0 1 2 115489195 115489216 mRNA hsa-miR-378 CASP7 miRanda miRanda
2478 chr10 115489209 115489209 1 + G C GBM 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGCCAGGCACTTTGACTCTCAGT < 41bp 1 0.327874875052391 1 0.263132154941559 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489209 nonsynonymous SNV 0.991 4 34 hm5C_associated_SNPs_22753 0 0 1 2 115489194 115489216 mRNA hsa-miR-422a CASP7 miRanda miRanda
2479 chr17 62223710 62223710 1 + G C GBM 62223702 + 62223682 62223722 41 TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGA TGTGTGTCGTTGGCGACGCGCTGTCTTTCAGCCCCCGCCGA < 41bp 1 0.292321450422004 1 0.0620604753494263 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223702 chr17:62223710 . . 0 29 hm5C_associated_SNPs_22831 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
2480 chr17 62223710 62223710 1 + G C GBM 62223702 + 62223682 62223722 41 TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGA TGTGTGTCGTTGGCGACGCGCTGTCTTTCAGCCCCCGCCGA < 41bp 1 0.292321450422004 1 0.0620604753494263 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223702 chr17:62223710 . . 0 29 hm5C_associated_SNPs_22831 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
2481 chr17 62223710 62223710 1 + G C GBM 62223702 + 62223682 62223722 41 TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGA TGTGTGTCGTTGGCGACGCGCTGTCTTTCAGCCCCCGCCGA < 41bp 1 0.292321450422004 1 0.0620604753494263 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223702 chr17:62223710 . . 0 29 hm5C_associated_SNPs_22831 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
2482 chr17 62223710 62223710 1 + G C GBM 62223702 + 62223682 62223722 41 TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGA TGTGTGTCGTTGGCGACGCGCTGTCTTTCAGCCCCCGCCGA < 41bp 1 0.292321450422004 1 0.0620604753494263 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223702 chr17:62223710 . . 0 29 hm5C_associated_SNPs_22831 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
2483 chr17 62223710 62223710 1 + G C GBM 62223706 + 62223686 62223726 41 TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTT TGTCGTTGGCGACGCGCTGTCTTTCAGCCCCCGCCGAGCTT < 41bp 1 0.114602585645127 1 0.0474865734577179 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223706 chr17:62223710 . . 0 25 hm5C_associated_SNPs_22832 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
2484 chr17 62223710 62223710 1 + G C GBM 62223706 + 62223686 62223726 41 TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTT TGTCGTTGGCGACGCGCTGTCTTTCAGCCCCCGCCGAGCTT < 41bp 1 0.114602585645127 1 0.0474865734577179 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223706 chr17:62223710 . . 0 25 hm5C_associated_SNPs_22832 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
2485 chr17 62223710 62223710 1 + G C GBM 62223706 + 62223686 62223726 41 TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTT TGTCGTTGGCGACGCGCTGTCTTTCAGCCCCCGCCGAGCTT < 41bp 1 0.114602585645127 1 0.0474865734577179 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223706 chr17:62223710 . . 0 25 hm5C_associated_SNPs_22832 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
2486 chr17 62223710 62223710 1 + G C GBM 62223706 + 62223686 62223726 41 TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTT TGTCGTTGGCGACGCGCTGTCTTTCAGCCCCCGCCGAGCTT < 41bp 1 0.114602585645127 1 0.0474865734577179 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223706 chr17:62223710 . . 0 25 hm5C_associated_SNPs_22832 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
2487 chr17 62223710 62223710 1 + G C GBM 62223713 + 62223693 62223733 41 GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG GGCGACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTG < 41bp 1 0.146454043582282 1 0.151125758886337 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223713 chr17:62223710 . . 0 18 hm5C_associated_SNPs_22833 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
2488 chr17 62223710 62223710 1 + G C GBM 62223713 + 62223693 62223733 41 GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG GGCGACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTG < 41bp 1 0.146454043582282 1 0.151125758886337 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223713 chr17:62223710 . . 0 18 hm5C_associated_SNPs_22833 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
2489 chr17 62223710 62223710 1 + G C GBM 62223713 + 62223693 62223733 41 GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG GGCGACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTG < 41bp 1 0.146454043582282 1 0.151125758886337 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223713 chr17:62223710 . . 0 18 hm5C_associated_SNPs_22833 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
2490 chr17 62223710 62223710 1 + G C GBM 62223713 + 62223693 62223733 41 GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG GGCGACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTG < 41bp 1 0.146454043582282 1 0.151125758886337 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223713 chr17:62223710 . . 0 18 hm5C_associated_SNPs_22833 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
2491 chr17 62223710 62223710 1 + G C GBM 62223714 + 62223694 62223734 41 GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG GCGACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGG < 41bp 1 0.326526105825973 1 0.105209171772003 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223714 chr17:62223710 . . 0 17 hm5C_associated_SNPs_22834 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
2492 chr17 62223710 62223710 1 + G C GBM 62223714 + 62223694 62223734 41 GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG GCGACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGG < 41bp 1 0.326526105825973 1 0.105209171772003 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223714 chr17:62223710 . . 0 17 hm5C_associated_SNPs_22834 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
2493 chr17 62223710 62223710 1 + G C GBM 62223714 + 62223694 62223734 41 GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG GCGACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGG < 41bp 1 0.326526105825973 1 0.105209171772003 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223714 chr17:62223710 . . 0 17 hm5C_associated_SNPs_22834 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
2494 chr17 62223710 62223710 1 + G C GBM 62223714 + 62223694 62223734 41 GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG GCGACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGG < 41bp 1 0.326526105825973 1 0.105209171772003 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223714 chr17:62223710 . . 0 17 hm5C_associated_SNPs_22834 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
2495 chr17 62223710 62223710 1 + G C GBM 62223715 + 62223695 62223735 41 CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC CGACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGGC < 41bp 1 0.187514191396762 1 0.0878905951976776 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223715 chr17:62223710 . . 0 16 hm5C_associated_SNPs_22835 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
2496 chr17 62223710 62223710 1 + G C GBM 62223715 + 62223695 62223735 41 CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC CGACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGGC < 41bp 1 0.187514191396762 1 0.0878905951976776 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223715 chr17:62223710 . . 0 16 hm5C_associated_SNPs_22835 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
2497 chr17 62223710 62223710 1 + G C GBM 62223715 + 62223695 62223735 41 CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC CGACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGGC < 41bp 1 0.187514191396762 1 0.0878905951976776 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223715 chr17:62223710 . . 0 16 hm5C_associated_SNPs_22835 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
2498 chr17 62223710 62223710 1 + G C GBM 62223715 + 62223695 62223735 41 CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC CGACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGGC < 41bp 1 0.187514191396762 1 0.0878905951976776 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223715 chr17:62223710 . . 0 16 hm5C_associated_SNPs_22835 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
2499 chr17 62223710 62223710 1 + G C GBM 62223716 + 62223696 62223736 41 GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG GACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGGCG < 41bp 1 0.121298829297138 1 0.0980886816978455 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223716 chr17:62223710 . . 0 15 hm5C_associated_SNPs_22836 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
2500 chr17 62223710 62223710 1 + G C GBM 62223716 + 62223696 62223736 41 GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG GACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGGCG < 41bp 1 0.121298829297138 1 0.0980886816978455 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223716 chr17:62223710 . . 0 15 hm5C_associated_SNPs_22836 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
2501 chr17 62223710 62223710 1 + G C GBM 62223716 + 62223696 62223736 41 GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG GACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGGCG < 41bp 1 0.121298829297138 1 0.0980886816978455 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223716 chr17:62223710 . . 0 15 hm5C_associated_SNPs_22836 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
2502 chr17 62223710 62223710 1 + G C GBM 62223716 + 62223696 62223736 41 GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG GACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGGCG < 41bp 1 0.121298829297138 1 0.0980886816978455 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223716 chr17:62223710 . . 0 15 hm5C_associated_SNPs_22836 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
2503 chr17 62223710 62223710 1 + G C GBM 62223720 + 62223700 62223740 41 CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG CGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG < 41bp 1 0.567608956211679 1 0.464351028203964 experiment 0.864782087576643 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223720 chr17:62223710 . . 0 11 hm5C_associated_SNPs_22837 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
2504 chr17 62223710 62223710 1 + G C GBM 62223720 + 62223700 62223740 41 CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG CGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG < 41bp 1 0.567608956211679 1 0.464351028203964 experiment 0.864782087576643 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223720 chr17:62223710 . . 0 11 hm5C_associated_SNPs_22837 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
2505 chr17 62223710 62223710 1 + G C GBM 62223720 + 62223700 62223740 41 CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG CGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG < 41bp 1 0.567608956211679 1 0.464351028203964 experiment 0.864782087576643 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223720 chr17:62223710 . . 0 11 hm5C_associated_SNPs_22837 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
2506 chr17 62223710 62223710 1 + G C GBM 62223720 + 62223700 62223740 41 CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG CGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG < 41bp 1 0.567608956211679 1 0.464351028203964 experiment 0.864782087576643 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223720 chr17:62223710 . . 0 11 hm5C_associated_SNPs_22837 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
2507 chr17 62223710 62223710 1 + G C GBM 62223727 + 62223707 62223747 41 TTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA TTTCAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA < 41bp 1 0.25685546917995 1 0.406045585870743 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223727 chr17:62223710 . . 0 4 hm5C_associated_SNPs_22838 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
2508 chr17 62223710 62223710 1 + G C GBM 62223727 + 62223707 62223747 41 TTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA TTTCAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA < 41bp 1 0.25685546917995 1 0.406045585870743 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223727 chr17:62223710 . . 0 4 hm5C_associated_SNPs_22838 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
2509 chr17 62223710 62223710 1 + G C GBM 62223727 + 62223707 62223747 41 TTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA TTTCAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA < 41bp 1 0.25685546917995 1 0.406045585870743 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223727 chr17:62223710 . . 0 4 hm5C_associated_SNPs_22838 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
2510 chr17 62223710 62223710 1 + G C GBM 62223727 + 62223707 62223747 41 TTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA TTTCAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA < 41bp 1 0.25685546917995 1 0.406045585870743 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223727 chr17:62223710 . . 0 4 hm5C_associated_SNPs_22838 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
2511 chr17 62223710 62223710 1 + G C GBM 62223728 + 62223708 62223748 41 TTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT TTCAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT < 41bp 1 0.621759459507057 1 0.288967043161392 experiment 0.756481080985887 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223728 chr17:62223710 . . 0 3 hm5C_associated_SNPs_22839 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
2512 chr17 62223710 62223710 1 + G C GBM 62223728 + 62223708 62223748 41 TTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT TTCAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT < 41bp 1 0.621759459507057 1 0.288967043161392 experiment 0.756481080985887 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223728 chr17:62223710 . . 0 3 hm5C_associated_SNPs_22839 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
2513 chr17 62223710 62223710 1 + G C GBM 62223728 + 62223708 62223748 41 TTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT TTCAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT < 41bp 1 0.621759459507057 1 0.288967043161392 experiment 0.756481080985887 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223728 chr17:62223710 . . 0 3 hm5C_associated_SNPs_22839 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
2514 chr17 62223710 62223710 1 + G C GBM 62223728 + 62223708 62223748 41 TTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT TTCAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT < 41bp 1 0.621759459507057 1 0.288967043161392 experiment 0.756481080985887 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223728 chr17:62223710 . . 0 3 hm5C_associated_SNPs_22839 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
2515 chr19 58290976 58290976 1 + G A GBM 58290970 + 58290950 58290990 41 TTATTATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT TTATTATACATCTGAGAGTTCACACTAGAGAAAGGCCTTAT < 41bp 1 0.220131407019482 1 0.0732112228870392 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58290970 chr19:58290976 nonsynonymous SNV 0.971 3 27 hm5C_associated_SNPs_22841 0 0 1 3 58290955 58290978 mRNA hsa-miR-199a-5p ZNF586 miRanda miRanda
2516 chr19 58290976 58290976 1 + G A GBM 58290970 + 58290950 58290990 41 TTATTATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT TTATTATACATCTGAGAGTTCACACTAGAGAAAGGCCTTAT < 41bp 1 0.220131407019482 1 0.0732112228870392 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58290970 chr19:58290976 nonsynonymous SNV 0.971 3 27 hm5C_associated_SNPs_22841 0 0 1 3 58290958 58290978 mRNA hsa-miR-199b-5p ZNF586 miRanda miRanda
2517 chr19 58290976 58290976 1 + G A GBM 58290970 + 58290950 58290990 41 TTATTATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT TTATTATACATCTGAGAGTTCACACTAGAGAAAGGCCTTAT < 41bp 1 0.220131407019482 1 0.0732112228870392 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58290970 chr19:58290976 nonsynonymous SNV 0.971 3 27 hm5C_associated_SNPs_22841 0 0 1 3 58290956 58290977 mRNA hsa-miR-125a-3p ZNF586 miRanda miRanda
2518 chr19 58290965 58290965 1 + G A GBM 58290970 + 58290950 58290990 41 TTATTATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT TTATTATACATCTGAAAGTTCACACTGGAGAAAGGCCTTAT < 41bp 1 0.210029644836189 1 0.0649387836456299 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58290970 chr19:58290965 nonsynonymous SNV 0.789 2 16 hm5C_associated_SNPs_22842 0 0 1 3 58290955 58290978 mRNA hsa-miR-199a-5p ZNF586 miRanda miRanda
2519 chr19 58290965 58290965 1 + G A GBM 58290970 + 58290950 58290990 41 TTATTATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT TTATTATACATCTGAAAGTTCACACTGGAGAAAGGCCTTAT < 41bp 1 0.210029644836189 1 0.0649387836456299 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58290970 chr19:58290965 nonsynonymous SNV 0.789 2 16 hm5C_associated_SNPs_22842 0 0 1 3 58290958 58290978 mRNA hsa-miR-199b-5p ZNF586 miRanda miRanda
2520 chr19 58290965 58290965 1 + G A GBM 58290970 + 58290950 58290990 41 TTATTATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT TTATTATACATCTGAAAGTTCACACTGGAGAAAGGCCTTAT < 41bp 1 0.210029644836189 1 0.0649387836456299 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58290970 chr19:58290965 nonsynonymous SNV 0.789 2 16 hm5C_associated_SNPs_22842 0 0 1 3 58290956 58290977 mRNA hsa-miR-125a-3p ZNF586 miRanda miRanda
2521 chr6 33380542 33380542 1 + G A GBM 33380523 + 33380503 33380543 41 TTGTGTCTGTCGCTCTGAGACTGTGGTCCCTGGGAACCGGC TTGTGTCTGTCGCTCTGAGACTGTGGTCCCTGGGAACCGAC < 41bp 1 0.433201720632094 1 0.135435968637466 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380523 chr6:33380542 synonymous SNV . 0 40 hm5C_associated_SNPs_22930 0 0 1 2 33380531 33380553 mRNA hsa-miR-22 PHF1 miRanda miRanda
2522 chr6 33380542 33380542 1 + G A GBM 33380523 + 33380503 33380543 41 TTGTGTCTGTCGCTCTGAGACTGTGGTCCCTGGGAACCGGC TTGTGTCTGTCGCTCTGAGACTGTGGTCCCTGGGAACCGAC < 41bp 1 0.433201720632094 1 0.135435968637466 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380523 chr6:33380542 synonymous SNV . 0 40 hm5C_associated_SNPs_22930 0 0 1 2 33380536 33380556 mRNA hsa-miR-128 PHF1 miRanda miRanda
2523 chr7 135258552 135258552 1 + G A GBM 135258571 + 135258551 135258591 41 AGCTGTTGAGCTTCTTCTTGCTGGTAGGTTGACATTTAACT AACTGTTGAGCTTCTTCTTGCTGGTAGGTTGACATTTAACT < 41bp 1 0.212807849487171 1 0.118764460086823 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135258571 chr7:135258552 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_22931 0 0 1 2 135258534 135258555 mRNA hsa-miR-22 NUP205 miRanda miRanda
2524 chr7 135258552 135258552 1 + G A GBM 135258571 + 135258551 135258591 41 AGCTGTTGAGCTTCTTCTTGCTGGTAGGTTGACATTTAACT AACTGTTGAGCTTCTTCTTGCTGGTAGGTTGACATTTAACT < 41bp 1 0.212807849487171 1 0.118764460086823 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135258571 chr7:135258552 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_22931 0 0 1 2 135258538 135258560 mRNA hsa-miR-421 NUP205 miRanda miRanda
2525 chr1 92769550 92769550 1 + C A GBM 92769553 + 92769533 92769573 41 GGGGAGGTTCATTACACCTGCTCACTACAGTGATGTCGTGG GGGGAGGTTCATTACACATGCTCACTACAGTGATGTCGTGG < 41bp 1 0.256567730941705 1 0.0762902796268463 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92769553 chr1:92769550 nonsynonymous SNV 0.996 3 18 hm5C_associated_SNPs_22933 0 0 1 1 92769534 92769558 mRNA hsa-miR-542-3p RPAP2 miRanda miRanda
2526 chr11 70181755 70181755 1 + G A GBM 70181768 + 70181748 70181788 41 ATGAGAGGCTTCAACTTCATCTTAAAGAGAGAATGGCTGCT ATGAGAGACTTCAACTTCATCTTAAAGAGAGAATGGCTGCT < 41bp 1 0.224700802367916 1 0.245926976203918 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70181768 chr11:70181755 synonymous SNV . 0 8 hm5C_associated_SNPs_22954 0 0 1 1 70181731 70181755 mRNA hsa-miR-136 PPFIA1 miRanda miRanda
2527 chr1 109643103 109643103 1 + G A GBM 109643087 + 109643067 109643107 41 CCCCTCGGGGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGC CCCCTCGGGGCGCTGTGCAGCGAGGCCCCTTAGGCGACGGC < 41bp 1 0.771247680954813 1 0.887897133827209 experiment 0.457504638090375 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643087 chr1:109643103 . . 0 37 hm5C_associated_SNPs_23010 0 0 1 1 109643099 109643119 lncRNA hsa-miR-140-3p AL356488.2 miRanda starBase2
2528 chr1 109643103 109643103 1 + G A GBM 109643093 + 109643073 109643113 41 GGGGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCACGCT GGGGCGCTGTGCAGCGAGGCCCCTTAGGCGACGGCCACGCT < 41bp 1 0.178087268189248 1 0.0430663824081421 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643093 chr1:109643103 . . 0 31 hm5C_associated_SNPs_23011 0 0 1 1 109643099 109643119 lncRNA hsa-miR-140-3p AL356488.2 miRanda starBase2
2529 chr1 109643103 109643103 1 + G A GBM 109643095 + 109643075 109643115 41 GGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCACGCTGT GGCGCTGTGCAGCGAGGCCCCTTAGGCGACGGCCACGCTGT < 41bp 1 0.67847627669919 1 0.147378742694855 experiment 0.643047446601619 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643095 chr1:109643103 . . 0 29 hm5C_associated_SNPs_23012 0 0 1 1 109643099 109643119 lncRNA hsa-miR-140-3p AL356488.2 miRanda starBase2
2530 chr1 109643103 109643103 1 + G A GBM 109643104 + 109643084 109643124 41 CAGCGAGGCCCCTTAGGCGGCGGCCACGCTGTGGTCCCCGA CAGCGAGGCCCCTTAGGCGACGGCCACGCTGTGGTCCCCGA < 41bp 1 0.704982836072444 1 0.322390168905258 experiment 0.590034327855112 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643104 chr1:109643103 . . 0 20 hm5C_associated_SNPs_23013 0 0 1 1 109643099 109643119 lncRNA hsa-miR-140-3p AL356488.2 miRanda starBase2
2531 chr1 109643103 109643103 1 + G A GBM 109643108 + 109643088 109643128 41 GAGGCCCCTTAGGCGGCGGCCACGCTGTGGTCCCCGAGGTC GAGGCCCCTTAGGCGACGGCCACGCTGTGGTCCCCGAGGTC < 41bp 1 0.633935089766804 1 0.49820664525032 experiment 0.732129820466392 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643108 chr1:109643103 . . 0 16 hm5C_associated_SNPs_23014 0 0 1 1 109643099 109643119 lncRNA hsa-miR-140-3p AL356488.2 miRanda starBase2
2532 chr1 109643103 109643103 1 + G A GBM 109643120 + 109643100 109643140 41 GCGGCGGCCACGCTGTGGTCCCCGAGGTCCCGGAGCTGGCC GCGACGGCCACGCTGTGGTCCCCGAGGTCCCGGAGCTGGCC < 41bp 1 0.723094239545713 1 0.417340278625488 experiment 0.553811520908574 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643120 chr1:109643103 . . 0 4 hm5C_associated_SNPs_23015 0 0 1 1 109643099 109643119 lncRNA hsa-miR-140-3p AL356488.2 miRanda starBase2
2533 chrX 73046727 73046727 1 - T C GBM 73046709 - 73046689 73046729 41 GGACAGGACACATGGAAGGCCTAAGAACTGAGACTTGTGAC GGGCAGGACACATGGAAGGCCTAAGAACTGAGACTTGTGAC < 41bp 1 0.288530388725166 1 0.319032371044159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046709 chrX:73046727 . . 0 3 hm5C_associated_SNPs_23081 0 0 1 2 73046707 73046727 lncRNA hsa-miR-1245b-5p XIST miRanda starBase2
2534 chrX 73046727 73046727 1 - T C GBM 73046709 - 73046689 73046729 41 GGACAGGACACATGGAAGGCCTAAGAACTGAGACTTGTGAC GGGCAGGACACATGGAAGGCCTAAGAACTGAGACTTGTGAC < 41bp 1 0.288530388725166 1 0.319032371044159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046709 chrX:73046727 . . 0 3 hm5C_associated_SNPs_23081 0 0 1 2 73046707 73046729 lncRNA hsa-miR-3142 XIST miRanda starBase2
2535 chrX 73046727 73046727 1 - T C GBM 73046721 - 73046701 73046741 41 TCTTAAGACCTGGGACAGGACACATGGAAGGCCTAAGAACT TCTTAAGACCTGGGGCAGGACACATGGAAGGCCTAAGAACT < 41bp 1 0.21553056842254 1 0.119330406188965 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046721 chrX:73046727 . . 0 15 hm5C_associated_SNPs_23082 0 0 1 2 73046707 73046727 lncRNA hsa-miR-1245b-5p XIST miRanda starBase2
2536 chrX 73046727 73046727 1 - T C GBM 73046721 - 73046701 73046741 41 TCTTAAGACCTGGGACAGGACACATGGAAGGCCTAAGAACT TCTTAAGACCTGGGGCAGGACACATGGAAGGCCTAAGAACT < 41bp 1 0.21553056842254 1 0.119330406188965 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046721 chrX:73046727 . . 0 15 hm5C_associated_SNPs_23082 0 0 1 2 73046707 73046729 lncRNA hsa-miR-3142 XIST miRanda starBase2
2537 chrX 73046727 73046727 1 - T C GBM 73046726 - 73046706 73046746 41 AGAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA AGAAGTCTTAAGACCTGGGGCAGGACACATGGAAGGCCTAA < 41bp 1 0.565774809592283 1 0.583631873130798 experiment 0.868450380815435 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046726 chrX:73046727 . . 0 20 hm5C_associated_SNPs_23083 0 0 1 2 73046707 73046727 lncRNA hsa-miR-1245b-5p XIST miRanda starBase2
2538 chrX 73046727 73046727 1 - T C GBM 73046726 - 73046706 73046746 41 AGAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA AGAAGTCTTAAGACCTGGGGCAGGACACATGGAAGGCCTAA < 41bp 1 0.565774809592283 1 0.583631873130798 experiment 0.868450380815435 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046726 chrX:73046727 . . 0 20 hm5C_associated_SNPs_23083 0 0 1 2 73046707 73046729 lncRNA hsa-miR-3142 XIST miRanda starBase2
2539 chr20 2843940 2843940 1 + G A GBM 2843957 + 2843937 2843977 41 CTCGTGTTGCGGAGACTTTACCCCCTGGCCATCCAGATATG CTCATGTTGCGGAGACTTTACCCCCTGGCCATCCAGATATG < 41bp 1 0.259758523814754 1 0.0860644578933716 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843957 chr20:2843940 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_23085 0 0 0 1 2843936 2843951 mRNA hsa-miR-150 VPS16 miRanda miRanda
2540 chr17 28961071 28961071 1 + G C HNSC 28961053 + 28961033 28961073 41 TATGACTATAAGAACAAACTCATCTTCGCAATATCTGTGAC TATGACTATAAGAACAAACTCATCTTCGCAATATCTGTCAC < 41bp 1 0.0751458585615982 1 0.100877463817596 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC107133515 ENSG00000214719;ENSG00000250462 ncRNA_exonic Human other chr17:28961053 chr17:28961071 . . 0 39 hm5C_associated_SNPs_23244 0 0 1 1 28961062 28961083 mRNA hsa-miR-411 LRRC37B2 miRanda miRanda
2541 chr17 58024140 58024140 1 + G C HNSC 58024120 + 58024100 58024140 41 CTTTTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATG CTTTTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATC < 41bp 1 0.484207621542207 1 0.24544757604599 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPS6KB1 ENSG00000108443 CDS Human protein_coding chr17:58024120 chr17:58024140 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_23272 0 0 1 2 58024130 58024150 mRNA hsa-miR-376a RPS6KB1 miRanda miRanda
2542 chr17 58024140 58024140 1 + G C HNSC 58024120 + 58024100 58024140 41 CTTTTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATG CTTTTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATC < 41bp 1 0.484207621542207 1 0.24544757604599 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPS6KB1 ENSG00000108443 CDS Human protein_coding chr17:58024120 chr17:58024140 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_23272 0 0 1 2 58024129 58024150 mRNA hsa-miR-376b RPS6KB1 miRanda miRanda
2543 chr17 58024140 58024140 1 + G C HNSC 58024123 + 58024103 58024143 41 TTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATGAAT TTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATCAAT < 41bp 1 0.37811419584982 1 0.101139724254608 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPS6KB1 ENSG00000108443 CDS Human protein_coding chr17:58024123 chr17:58024140 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_23273 0 0 1 2 58024130 58024150 mRNA hsa-miR-376a RPS6KB1 miRanda miRanda
2544 chr17 58024140 58024140 1 + G C HNSC 58024123 + 58024103 58024143 41 TTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATGAAT TTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATCAAT < 41bp 1 0.37811419584982 1 0.101139724254608 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPS6KB1 ENSG00000108443 CDS Human protein_coding chr17:58024123 chr17:58024140 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_23273 0 0 1 2 58024129 58024150 mRNA hsa-miR-376b RPS6KB1 miRanda miRanda
2545 chr10 12191690 12191690 1 + C T HNSC 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATACACTGAAAGATAGAGCTTTAT < 41bp 1 0.30631299639295 1 0.0715384483337402 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191690 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_23291 0 0 1 4 12191685 12191706 mRNA hsa-miR-320a SEC61A2 miRanda miRanda
2546 chr10 12191690 12191690 1 + C T HNSC 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATACACTGAAAGATAGAGCTTTAT < 41bp 1 0.30631299639295 1 0.0715384483337402 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191690 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_23291 0 0 1 4 12191685 12191706 mRNA hsa-miR-320b SEC61A2 miRanda miRanda
2547 chr10 12191690 12191690 1 + C T HNSC 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATACACTGAAAGATAGAGCTTTAT < 41bp 1 0.30631299639295 1 0.0715384483337402 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191690 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_23291 0 0 1 4 12191687 12191706 mRNA hsa-miR-320c SEC61A2 miRanda miRanda
2548 chr10 12191690 12191690 1 + C T HNSC 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATACACTGAAAGATAGAGCTTTAT < 41bp 1 0.30631299639295 1 0.0715384483337402 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191690 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_23291 0 0 1 4 12191688 12191706 mRNA hsa-miR-320d SEC61A2 miRanda miRanda
2549 chr2 160605112 160605112 1 + G C HNSC 160605129 + 160605109 160605149 41 ACAGAATGATCCTCTTGGAGCTGCTGCCAACAGACCACAAG ACACAATGATCCTCTTGGAGCTGCTGCCAACAGACCACAAG < 41bp 1 0.628595752734419 1 0.119097709655762 experiment 0.742808494531161 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160605129 chr2:160605112 nonsynonymous SNV 0.939 2 4 hm5C_associated_SNPs_23319 0 0 1 1 160605090 160605112 mRNA hsa-miR-218 MARCH7 miRanda miRanda
2550 chr12 53854798 53854798 1 + G A HNSC 53854793 + 53854773 53854813 41 ATTTTGAATTTCTTTTTACTCCAAAGAGTACAGGGGCTCAG ATTTTGAATTTCTTTTTACTCCAAAAAGTACAGGGGCTCAG < 41bp 1 0.333056951297944 1 0.332018792629242 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCBP2 ENSG00000197111 splicing Human protein_coding chr12:53854793 chr12:53854798 . 0.998 0 26 hm5C_associated_SNPs_23329 0 0 1 1 53854786 53854807 mRNA hsa-miR-486-5p PCBP2 miRanda miRanda
2551 chr12 53854798 53854798 1 + G A HNSC 53854794 + 53854774 53854814 41 TTTTGAATTTCTTTTTACTCCAAAGAGTACAGGGGCTCAGG TTTTGAATTTCTTTTTACTCCAAAAAGTACAGGGGCTCAGG < 41bp 1 0.314306858724113 1 0.271703153848648 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCBP2 ENSG00000197111 splicing Human protein_coding chr12:53854794 chr12:53854798 . 0.998 0 25 hm5C_associated_SNPs_23330 0 0 1 1 53854786 53854807 mRNA hsa-miR-486-5p PCBP2 miRanda miRanda
2552 chr16 30096327 30096327 1 + C T HNSC 30096347 + 30096327 30096367 41 CCCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGC TCCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGC < 41bp 1 0.321934975065975 1 0.118390947580338 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096347 chr16:30096327 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_23364 0 0 1 1 30096318 30096341 mRNA hsa-miR-187 PPP4C miRanda miRanda
2553 chr6 158449877 158449877 1 + A G HNSC 158449888 + 158449868 158449908 41 ATCACTGCCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA ATCACTGCCGCTGACTTTTACCCTCTTCAGGAAGAGGCCAA < 41bp 1 0.061037416471311 1 0.0554773807525635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158449888 chr6:158449877 nonsynonymous SNV 0.122 0 10 hm5C_associated_SNPs_23386 0 0 1 4 158449856 158449877 mRNA hsa-miR-34a SYNJ2 miRanda miRanda
2554 chr6 158449877 158449877 1 + A G HNSC 158449888 + 158449868 158449908 41 ATCACTGCCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA ATCACTGCCGCTGACTTTTACCCTCTTCAGGAAGAGGCCAA < 41bp 1 0.061037416471311 1 0.0554773807525635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158449888 chr6:158449877 nonsynonymous SNV 0.122 0 10 hm5C_associated_SNPs_23386 0 0 1 4 158449856 158449877 mRNA hsa-miR-34c-5p SYNJ2 miRanda miRanda
2555 chr6 158449877 158449877 1 + A G HNSC 158449888 + 158449868 158449908 41 ATCACTGCCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA ATCACTGCCGCTGACTTTTACCCTCTTCAGGAAGAGGCCAA < 41bp 1 0.061037416471311 1 0.0554773807525635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158449888 chr6:158449877 nonsynonymous SNV 0.122 0 10 hm5C_associated_SNPs_23386 0 0 1 4 158449856 158449877 mRNA hsa-miR-449a SYNJ2 miRanda miRanda
2556 chr6 158449877 158449877 1 + A G HNSC 158449888 + 158449868 158449908 41 ATCACTGCCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA ATCACTGCCGCTGACTTTTACCCTCTTCAGGAAGAGGCCAA < 41bp 1 0.061037416471311 1 0.0554773807525635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158449888 chr6:158449877 nonsynonymous SNV 0.122 0 10 hm5C_associated_SNPs_23386 0 0 1 4 158449856 158449877 mRNA hsa-miR-449b SYNJ2 miRanda miRanda
2557 chr11 65268685 65268685 1 + A G HNSC 65268671 + 65268651 65268691 41 TGTAGAGTTTGGATGTGTAACTGAGGCGGGGGGGAGTTTTC TGTAGAGTTTGGATGTGTAACTGAGGCGGGGGGGGGTTTTC < 41bp 1 0.713781708797849 1 0.394006162881851 experiment 0.572436582404302 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268671 chr11:65268685 . . 0 35 hm5C_associated_SNPs_23391 0 0 1 3 65268677 65268698 lncRNA hsa-miR-200b-3p MALAT1 miRanda starBase2
2558 chr11 65268685 65268685 1 + A G HNSC 65268671 + 65268651 65268691 41 TGTAGAGTTTGGATGTGTAACTGAGGCGGGGGGGAGTTTTC TGTAGAGTTTGGATGTGTAACTGAGGCGGGGGGGGGTTTTC < 41bp 1 0.713781708797849 1 0.394006162881851 experiment 0.572436582404302 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268671 chr11:65268685 . . 0 35 hm5C_associated_SNPs_23391 0 0 1 3 65268676 65268698 lncRNA hsa-miR-200c-3p MALAT1 miRanda starBase2
2559 chr11 65268685 65268685 1 + A G HNSC 65268671 + 65268651 65268691 41 TGTAGAGTTTGGATGTGTAACTGAGGCGGGGGGGAGTTTTC TGTAGAGTTTGGATGTGTAACTGAGGCGGGGGGGGGTTTTC < 41bp 1 0.713781708797849 1 0.394006162881851 experiment 0.572436582404302 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268671 chr11:65268685 . . 0 35 hm5C_associated_SNPs_23391 0 0 1 3 65268677 65268698 lncRNA hsa-miR-429 MALAT1 miRanda starBase2
2560 chr1 109643008 109643008 1 + G A HNSC 109642989 + 109642969 109643009 41 CGCCCCTCCTCCCGCTTACACTTTGATCTTATTTGATCGGA CGCCCCTCCTCCCGCTTACACTTTGATCTTATTTGATCGAA < 41bp 1 0.249340083674405 1 0.0526989102363586 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642989 chr1:109643008 . . 0 40 hm5C_associated_SNPs_23406 0 0 1 4 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2561 chr1 109643008 109643008 1 + G A HNSC 109642989 + 109642969 109643009 41 CGCCCCTCCTCCCGCTTACACTTTGATCTTATTTGATCGGA CGCCCCTCCTCCCGCTTACACTTTGATCTTATTTGATCGAA < 41bp 1 0.249340083674405 1 0.0526989102363586 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642989 chr1:109643008 . . 0 40 hm5C_associated_SNPs_23406 0 0 1 4 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2562 chr1 109643008 109643008 1 + G A HNSC 109642989 + 109642969 109643009 41 CGCCCCTCCTCCCGCTTACACTTTGATCTTATTTGATCGGA CGCCCCTCCTCCCGCTTACACTTTGATCTTATTTGATCGAA < 41bp 1 0.249340083674405 1 0.0526989102363586 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642989 chr1:109643008 . . 0 40 hm5C_associated_SNPs_23406 0 0 1 4 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2563 chr1 109643008 109643008 1 + G A HNSC 109642989 + 109642969 109643009 41 CGCCCCTCCTCCCGCTTACACTTTGATCTTATTTGATCGGA CGCCCCTCCTCCCGCTTACACTTTGATCTTATTTGATCGAA < 41bp 1 0.249340083674405 1 0.0526989102363586 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642989 chr1:109643008 . . 0 40 hm5C_associated_SNPs_23406 0 0 1 4 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2564 chr1 109643008 109643008 1 + G A HNSC 109642996 + 109642976 109643016 41 CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTGAC CCTCCCGCTTACACTTTGATCTTATTTGATCGAATCGTGAC < 41bp 1 0.239366218554663 1 0.0308262407779694 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642996 chr1:109643008 . . 0 33 hm5C_associated_SNPs_23407 0 0 1 4 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2565 chr1 109643008 109643008 1 + G A HNSC 109642996 + 109642976 109643016 41 CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTGAC CCTCCCGCTTACACTTTGATCTTATTTGATCGAATCGTGAC < 41bp 1 0.239366218554663 1 0.0308262407779694 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642996 chr1:109643008 . . 0 33 hm5C_associated_SNPs_23407 0 0 1 4 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2566 chr1 109643008 109643008 1 + G A HNSC 109642996 + 109642976 109643016 41 CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTGAC CCTCCCGCTTACACTTTGATCTTATTTGATCGAATCGTGAC < 41bp 1 0.239366218554663 1 0.0308262407779694 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642996 chr1:109643008 . . 0 33 hm5C_associated_SNPs_23407 0 0 1 4 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2567 chr1 109643008 109643008 1 + G A HNSC 109642996 + 109642976 109643016 41 CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTGAC CCTCCCGCTTACACTTTGATCTTATTTGATCGAATCGTGAC < 41bp 1 0.239366218554663 1 0.0308262407779694 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642996 chr1:109643008 . . 0 33 hm5C_associated_SNPs_23407 0 0 1 4 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2568 chr1 109643008 109643008 1 + G A HNSC 109643006 + 109642986 109643026 41 ACACTTTGATCTTATTTGATCGGATCGTGACCCCAGCCCCG ACACTTTGATCTTATTTGATCGAATCGTGACCCCAGCCCCG < 41bp 1 0.390534008499263 1 0.335484355688095 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643006 chr1:109643008 . . 0 23 hm5C_associated_SNPs_23408 0 0 1 4 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2569 chr1 109643008 109643008 1 + G A HNSC 109643006 + 109642986 109643026 41 ACACTTTGATCTTATTTGATCGGATCGTGACCCCAGCCCCG ACACTTTGATCTTATTTGATCGAATCGTGACCCCAGCCCCG < 41bp 1 0.390534008499263 1 0.335484355688095 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643006 chr1:109643008 . . 0 23 hm5C_associated_SNPs_23408 0 0 1 4 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2570 chr1 109643008 109643008 1 + G A HNSC 109643006 + 109642986 109643026 41 ACACTTTGATCTTATTTGATCGGATCGTGACCCCAGCCCCG ACACTTTGATCTTATTTGATCGAATCGTGACCCCAGCCCCG < 41bp 1 0.390534008499263 1 0.335484355688095 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643006 chr1:109643008 . . 0 23 hm5C_associated_SNPs_23408 0 0 1 4 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2571 chr1 109643008 109643008 1 + G A HNSC 109643006 + 109642986 109643026 41 ACACTTTGATCTTATTTGATCGGATCGTGACCCCAGCCCCG ACACTTTGATCTTATTTGATCGAATCGTGACCCCAGCCCCG < 41bp 1 0.390534008499263 1 0.335484355688095 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643006 chr1:109643008 . . 0 23 hm5C_associated_SNPs_23408 0 0 1 4 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2572 chr1 109643008 109643008 1 + G A HNSC 109643011 + 109642991 109643031 41 TTGATCTTATTTGATCGGATCGTGACCCCAGCCCCGCCGGG TTGATCTTATTTGATCGAATCGTGACCCCAGCCCCGCCGGG < 41bp 1 0.629698890483315 1 0.539161145687103 experiment 0.74060221903337 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643011 chr1:109643008 . . 0 18 hm5C_associated_SNPs_23409 0 0 1 4 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2573 chr1 109643008 109643008 1 + G A HNSC 109643011 + 109642991 109643031 41 TTGATCTTATTTGATCGGATCGTGACCCCAGCCCCGCCGGG TTGATCTTATTTGATCGAATCGTGACCCCAGCCCCGCCGGG < 41bp 1 0.629698890483315 1 0.539161145687103 experiment 0.74060221903337 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643011 chr1:109643008 . . 0 18 hm5C_associated_SNPs_23409 0 0 1 4 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2574 chr1 109643008 109643008 1 + G A HNSC 109643011 + 109642991 109643031 41 TTGATCTTATTTGATCGGATCGTGACCCCAGCCCCGCCGGG TTGATCTTATTTGATCGAATCGTGACCCCAGCCCCGCCGGG < 41bp 1 0.629698890483315 1 0.539161145687103 experiment 0.74060221903337 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643011 chr1:109643008 . . 0 18 hm5C_associated_SNPs_23409 0 0 1 4 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2575 chr1 109643008 109643008 1 + G A HNSC 109643011 + 109642991 109643031 41 TTGATCTTATTTGATCGGATCGTGACCCCAGCCCCGCCGGG TTGATCTTATTTGATCGAATCGTGACCCCAGCCCCGCCGGG < 41bp 1 0.629698890483315 1 0.539161145687103 experiment 0.74060221903337 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643011 chr1:109643008 . . 0 18 hm5C_associated_SNPs_23409 0 0 1 4 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2576 chr1 109643008 109643008 1 + G A HNSC 109643018 + 109642998 109643038 41 TATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCC TATTTGATCGAATCGTGACCCCAGCCCCGCCGGGCCGACCC < 41bp 1 0.342390707251742 1 0.503829181194305 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643018 chr1:109643008 . . 0 11 hm5C_associated_SNPs_23410 0 0 1 4 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2577 chr1 109643008 109643008 1 + G A HNSC 109643018 + 109642998 109643038 41 TATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCC TATTTGATCGAATCGTGACCCCAGCCCCGCCGGGCCGACCC < 41bp 1 0.342390707251742 1 0.503829181194305 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643018 chr1:109643008 . . 0 11 hm5C_associated_SNPs_23410 0 0 1 4 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2578 chr1 109643008 109643008 1 + G A HNSC 109643018 + 109642998 109643038 41 TATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCC TATTTGATCGAATCGTGACCCCAGCCCCGCCGGGCCGACCC < 41bp 1 0.342390707251742 1 0.503829181194305 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643018 chr1:109643008 . . 0 11 hm5C_associated_SNPs_23410 0 0 1 4 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2579 chr1 109643008 109643008 1 + G A HNSC 109643018 + 109642998 109643038 41 TATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCC TATTTGATCGAATCGTGACCCCAGCCCCGCCGGGCCGACCC < 41bp 1 0.342390707251742 1 0.503829181194305 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643018 chr1:109643008 . . 0 11 hm5C_associated_SNPs_23410 0 0 1 4 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2580 chr1 109643008 109643008 1 + G A HNSC 109643019 + 109642999 109643039 41 ATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCG ATTTGATCGAATCGTGACCCCAGCCCCGCCGGGCCGACCCG < 41bp 1 0.562651814670758 1 0.313721239566803 experiment 0.874696370658484 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643019 chr1:109643008 . . 0 10 hm5C_associated_SNPs_23411 0 0 1 4 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2581 chr1 109643008 109643008 1 + G A HNSC 109643019 + 109642999 109643039 41 ATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCG ATTTGATCGAATCGTGACCCCAGCCCCGCCGGGCCGACCCG < 41bp 1 0.562651814670758 1 0.313721239566803 experiment 0.874696370658484 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643019 chr1:109643008 . . 0 10 hm5C_associated_SNPs_23411 0 0 1 4 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2582 chr1 109643008 109643008 1 + G A HNSC 109643019 + 109642999 109643039 41 ATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCG ATTTGATCGAATCGTGACCCCAGCCCCGCCGGGCCGACCCG < 41bp 1 0.562651814670758 1 0.313721239566803 experiment 0.874696370658484 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643019 chr1:109643008 . . 0 10 hm5C_associated_SNPs_23411 0 0 1 4 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2583 chr1 109643008 109643008 1 + G A HNSC 109643019 + 109642999 109643039 41 ATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCG ATTTGATCGAATCGTGACCCCAGCCCCGCCGGGCCGACCCG < 41bp 1 0.562651814670758 1 0.313721239566803 experiment 0.874696370658484 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643019 chr1:109643008 . . 0 10 hm5C_associated_SNPs_23411 0 0 1 4 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2584 chr1 109643008 109643008 1 + G A HNSC 109643023 + 109643003 109643043 41 GATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT GATCGAATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT < 41bp 1 0.337972319653799 1 0.158858478069305 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643023 chr1:109643008 . . 0 6 hm5C_associated_SNPs_23412 0 0 1 4 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2585 chr1 109643008 109643008 1 + G A HNSC 109643023 + 109643003 109643043 41 GATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT GATCGAATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT < 41bp 1 0.337972319653799 1 0.158858478069305 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643023 chr1:109643008 . . 0 6 hm5C_associated_SNPs_23412 0 0 1 4 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2586 chr1 109643008 109643008 1 + G A HNSC 109643023 + 109643003 109643043 41 GATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT GATCGAATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT < 41bp 1 0.337972319653799 1 0.158858478069305 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643023 chr1:109643008 . . 0 6 hm5C_associated_SNPs_23412 0 0 1 4 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2587 chr1 109643008 109643008 1 + G A HNSC 109643023 + 109643003 109643043 41 GATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT GATCGAATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT < 41bp 1 0.337972319653799 1 0.158858478069305 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643023 chr1:109643008 . . 0 6 hm5C_associated_SNPs_23412 0 0 1 4 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2588 chr1 109643008 109643008 1 + G A HNSC 109643025 + 109643005 109643045 41 TCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGA TCGAATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGA < 41bp 1 0.690950042152631 1 0.491268068552017 experiment 0.618099915694739 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643025 chr1:109643008 . . 0 4 hm5C_associated_SNPs_23413 0 0 1 4 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2589 chr1 109643008 109643008 1 + G A HNSC 109643025 + 109643005 109643045 41 TCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGA TCGAATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGA < 41bp 1 0.690950042152631 1 0.491268068552017 experiment 0.618099915694739 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643025 chr1:109643008 . . 0 4 hm5C_associated_SNPs_23413 0 0 1 4 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2590 chr1 109643008 109643008 1 + G A HNSC 109643025 + 109643005 109643045 41 TCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGA TCGAATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGA < 41bp 1 0.690950042152631 1 0.491268068552017 experiment 0.618099915694739 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643025 chr1:109643008 . . 0 4 hm5C_associated_SNPs_23413 0 0 1 4 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2591 chr1 109643008 109643008 1 + G A HNSC 109643025 + 109643005 109643045 41 TCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGA TCGAATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGA < 41bp 1 0.690950042152631 1 0.491268068552017 experiment 0.618099915694739 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643025 chr1:109643008 . . 0 4 hm5C_associated_SNPs_23413 0 0 1 4 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2592 chr1 109643008 109643008 1 + G A HNSC 109643027 + 109643007 109643047 41 GGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA GAATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA < 41bp 1 0.357225090333147 1 0.375453174114227 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643027 chr1:109643008 . . 0 2 hm5C_associated_SNPs_23414 0 0 1 4 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2593 chr1 109643008 109643008 1 + G A HNSC 109643027 + 109643007 109643047 41 GGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA GAATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA < 41bp 1 0.357225090333147 1 0.375453174114227 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643027 chr1:109643008 . . 0 2 hm5C_associated_SNPs_23414 0 0 1 4 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2594 chr1 109643008 109643008 1 + G A HNSC 109643027 + 109643007 109643047 41 GGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA GAATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA < 41bp 1 0.357225090333147 1 0.375453174114227 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643027 chr1:109643008 . . 0 2 hm5C_associated_SNPs_23414 0 0 1 4 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2595 chr1 109643008 109643008 1 + G A HNSC 109643027 + 109643007 109643047 41 GGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA GAATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA < 41bp 1 0.357225090333147 1 0.375453174114227 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643027 chr1:109643008 . . 0 2 hm5C_associated_SNPs_23414 0 0 1 4 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2596 chr1 109643008 109643008 1 + G A HNSC 109643028 + 109643008 109643048 41 GATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA AATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA < 41bp 1 0.566937083442849 1 0.588861763477325 experiment 0.866125833114302 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643028 chr1:109643008 . . 0 1 hm5C_associated_SNPs_23415 0 0 1 4 109643006 109643029 lncRNA hsa-miR-663a AL356488.2 miRanda starBase2
2597 chr1 109643008 109643008 1 + G A HNSC 109643028 + 109643008 109643048 41 GATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA AATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA < 41bp 1 0.566937083442849 1 0.588861763477325 experiment 0.866125833114302 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643028 chr1:109643008 . . 0 1 hm5C_associated_SNPs_23415 0 0 1 4 109643008 109643029 lncRNA hsa-miR-6787-5p AL356488.2 miRanda starBase2
2598 chr1 109643008 109643008 1 + G A HNSC 109643028 + 109643008 109643048 41 GATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA AATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA < 41bp 1 0.566937083442849 1 0.588861763477325 experiment 0.866125833114302 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643028 chr1:109643008 . . 0 1 hm5C_associated_SNPs_23415 0 0 1 4 109643002 109643023 lncRNA hsa-miR-4731-5p AL356488.2 miRanda starBase2
2599 chr1 109643008 109643008 1 + G A HNSC 109643028 + 109643008 109643048 41 GATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA AATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA < 41bp 1 0.566937083442849 1 0.588861763477325 experiment 0.866125833114302 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643028 chr1:109643008 . . 0 1 hm5C_associated_SNPs_23415 0 0 1 4 109643007 109643028 lncRNA hsa-miR-744-5p AL356488.2 miRanda starBase2
2600 chr10 94757357 94757357 1 + G A HNSC 94757363 + 94757343 94757383 41 AGTTTAACTTAGATGTCATACAGTGTGAATGTAAGTACTAT AGTTTAACTTAGATATCATACAGTGTGAATGTAAGTACTAT < 41bp 1 0.222287563143649 1 0.134468615055084 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94757363 chr10:94757357 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_23444 0 0 1 1 94757349 94757370 mRNA hsa-miR-141 EXOC6 miRanda miRanda
2601 chr2 66691249 66691249 1 + G A HNSC 66691259 + 66691239 66691279 41 AGCCCTCTTGGAACAGAGATCATGATGACACGGCATCTACT AGCCCTCTTGAAACAGAGATCATGATGACACGGCATCTACT < 41bp 1 0.503667307278218 1 0.196590423583984 experiment 0.992665385443564 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66691259 chr2:66691249 stopgain 1.000 1 11 hm5C_associated_SNPs_23455 0 0 0 1 66691243 66691264 mRNA hsa-miR-433 MEIS1 miRanda miRanda
2602 chr2 157406233 157406233 1 + C A HNSC 157406248 + 157406228 157406268 41 ACCCCCAGACAGGGAAAGTGCGTGTGAGCGGCGCACGGTGC ACCCCAAGACAGGGAAAGTGCGTGTGAGCGGCGCACGGTGC < 41bp 1 0.636850892207703 1 0.441954374313354 experiment 0.726298215584594 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157406248 chr2:157406233 nonsynonymous SNV 0.633 0 6 hm5C_associated_SNPs_23495 0 0 0 1 157406220 157406242 mRNA hsa-miR-339-5p GPD2 miRanda miRanda
2603 chr5 72798854 72798854 1 + G C HNSC 72798844 + 72798824 72798864 41 CATTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGC CATTACAGGCCATGCTGAGACAAAGCAGCTCACAGAAATGC < 41bp 1 0.628008105109288 1 0.394893407821655 experiment 0.743983789781423 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTF3 ENSG00000145741 CDS Human protein_coding chr5:72798844 chr5:72798854 synonymous SNV . 0 31 hm5C_associated_SNPs_23503 0 0 1 1 72798853 72798878 mRNA hsa-miR-372 BTF3 miRanda miRanda
2604 chr5 102472513 102472513 1 + C T HNSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGACTTGAATATGCAGTATTTCATACAAGATAGG < 41bp 1 0.432244354591953 1 0.164623320102692 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472513 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_23621 0 0 1 2 102472493 102472516 mRNA hsa-miR-146a PPIP5K2 miRanda miRanda
2605 chr5 102472513 102472513 1 + C T HNSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGACTTGAATATGCAGTATTTCATACAAGATAGG < 41bp 1 0.432244354591953 1 0.164623320102692 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472513 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_23621 0 0 1 2 102472494 102472516 mRNA hsa-miR-146b-5p PPIP5K2 miRanda miRanda
2606 chr11 6412670 6412670 1 + G A HNSC 6412678 + 6412658 6412698 41 GTGCAATCTGCTGAAGATAGCACCACCTGCCGTGTGCCAAT GTGCAATCTGCTAAAGATAGCACCACCTGCCGTGTGCCAAT < 41bp 1 0.594073793567355 1 0.229750514030457 experiment 0.81185241286529 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6412678 chr11:6412670 synonymous SNV . 0 13 hm5C_associated_SNPs_23627 0 0 0 1 6412666 6412689 mRNA hsa-miR-34c-5p SMPD1 miRanda miRanda
2607 chr17 62223821 62223821 1 + G C HNSC 62223805 + 62223785 62223825 41 GCCGCCTGGCCTCCCGCGGGCGGCCTTTTTAACCGCGAGCG GCCGCCTGGCCTCCCGCGGGCGGCCTTTTTAACCGCCAGCG < 41bp 1 0.37118570885047 1 0.29120272397995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223805 chr17:62223821 . . 0 37 hm5C_associated_SNPs_23642 0 0 1 1 62223801 62223822 lncRNA hsa-miR-579-5p SNHG25 miRanda starBase2
2608 chr17 62223821 62223821 1 + G C HNSC 62223808 + 62223788 62223828 41 GCCTGGCCTCCCGCGGGCGGCCTTTTTAACCGCGAGCGACA GCCTGGCCTCCCGCGGGCGGCCTTTTTAACCGCCAGCGACA < 41bp 1 0.0324841652455198 1 0.0217791199684143 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223808 chr17:62223821 . . 0 34 hm5C_associated_SNPs_23643 0 0 1 1 62223801 62223822 lncRNA hsa-miR-579-5p SNHG25 miRanda starBase2
2609 chr17 62223821 62223821 1 + G C HNSC 62223817 + 62223797 62223837 41 CCCGCGGGCGGCCTTTTTAACCGCGAGCGACAAGAAGTAAC CCCGCGGGCGGCCTTTTTAACCGCCAGCGACAAGAAGTAAC < 41bp 1 0.297867518503482 1 0.162427097558975 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223817 chr17:62223821 . . 0 25 hm5C_associated_SNPs_23644 0 0 1 1 62223801 62223822 lncRNA hsa-miR-579-5p SNHG25 miRanda starBase2
2610 chr17 62223821 62223821 1 + G C HNSC 62223827 + 62223807 62223847 41 GCCTTTTTAACCGCGAGCGACAAGAAGTAACCTGACTGTCC GCCTTTTTAACCGCCAGCGACAAGAAGTAACCTGACTGTCC < 41bp 1 0.672467296068542 1 0.330245912075043 experiment 0.655065407862915 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223827 chr17:62223821 . . 0 15 hm5C_associated_SNPs_23645 0 0 1 1 62223801 62223822 lncRNA hsa-miR-579-5p SNHG25 miRanda starBase2
2611 chr20 47897282 47897282 1 + A G HNSC 47897288 + 47897268 47897308 41 TTGATCTCTACACTATTGGCCAGTTTTGTCTGATGCATTGG TTGATCTCTACACTGTTGGCCAGTTTTGTCTGATGCATTGG < 41bp 1 0.0620820693855751 1 0.109096854925156 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12 ENSG00000212304 ncRNA_exonic Human snoRNA chr20:47897288 chr20:47897282 . . 0 15 hm5C_associated_SNPs_23650 0 0 1 3 47897271 47897292 mRNA hsa-miR-193a-3p SNORD12 miRanda miRanda
2612 chr20 47897282 47897282 1 + A G HNSC 47897288 + 47897268 47897308 41 TTGATCTCTACACTATTGGCCAGTTTTGTCTGATGCATTGG TTGATCTCTACACTGTTGGCCAGTTTTGTCTGATGCATTGG < 41bp 1 0.0620820693855751 1 0.109096854925156 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12 ENSG00000212304 ncRNA_exonic Human snoRNA chr20:47897288 chr20:47897282 . . 0 15 hm5C_associated_SNPs_23650 0 0 1 3 47897277 47897303 mRNA hsa-miR-361-5p SNORD12 miRanda miRanda
2613 chr20 47897282 47897282 1 + A G HNSC 47897288 + 47897268 47897308 41 TTGATCTCTACACTATTGGCCAGTTTTGTCTGATGCATTGG TTGATCTCTACACTGTTGGCCAGTTTTGTCTGATGCATTGG < 41bp 1 0.0620820693855751 1 0.109096854925156 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12 ENSG00000212304 ncRNA_exonic Human snoRNA chr20:47897288 chr20:47897282 . . 0 15 hm5C_associated_SNPs_23650 0 0 1 3 47897273 47897292 mRNA hsa-miR-193b SNORD12 miRanda miRanda
2614 chrX 73044042 73044042 1 - G C HNSC 73044044 - 73044024 73044064 41 GTTATCTATTGTGTGCCAATCTCATTGCTAGGCATTGGGGA GTTATCTATTGTGTGCCAATCTGATTGCTAGGCATTGGGGA < 41bp 1 0.142175337932545 1 0.227012425661087 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044044 chrX:73044042 . . 0 23 hm5C_associated_SNPs_23682 0 0 1 1 73044034 73044054 lncRNA hsa-miR-4766-3p XIST miRanda starBase2
2615 chr9 100127991 100127991 1 + G T HNSC 100128003 + 100127983 100128023 41 CTCTGGGAGAGCAGTGAGAACCTGCTGACAGTCGCAGAGGT CTCTGGGATAGCAGTGAGAACCTGCTGACAGTCGCAGAGGT < 41bp 1 0.138071530380686 1 0.354977458715439 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100128003 chr9:100127991 nonsynonymous SNV 0.981 0 9 hm5C_associated_SNPs_23709 0 0 0 1 100127989 100128010 mRNA hsa-miR-214 KIAA1529 miRanda miRanda
2616 chr10 129866487 129866487 1 + A T HNSC 129866472 + 129866452 129866492 41 CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGATGTTCC < 41bp 1 0.0916173866966399 1 0.0652447044849396 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866472 chr10:129866487 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_23758 0 0 0 2 129866469 129866495 mRNA hsa-miR-146a PTPRE miRanda miRanda
2617 chr10 129866487 129866487 1 + A T HNSC 129866472 + 129866452 129866492 41 CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGATGTTCC < 41bp 1 0.0916173866966399 1 0.0652447044849396 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866472 chr10:129866487 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_23758 0 0 0 2 129866475 129866495 mRNA hsa-miR-873 PTPRE miRanda miRanda
2618 chr17 48562221 48562221 1 + G A HNSC 48562204 + 48562184 48562224 41 TGGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACA TGGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATAACA < 41bp 1 0.131814536653969 1 0.239024102687836 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562204 chr17:48562221 synonymous SNV . 0 38 hm5C_associated_SNPs_23759 0 0 0 1 48562216 48562237 mRNA hsa-miR-873 RSAD1 miRanda miRanda
2619 chr17 48562221 48562221 1 + G A HNSC 48562205 + 48562185 48562225 41 GGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACAA GGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATAACAA < 41bp 1 0.148086942968264 1 0.397725790739059 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562205 chr17:48562221 synonymous SNV . 0 37 hm5C_associated_SNPs_23760 0 0 0 1 48562216 48562237 mRNA hsa-miR-873 RSAD1 miRanda miRanda
2620 chr2 189458684 189458684 1 + A T HNSC 189458701 + 189458681 189458721 41 GGGACTAACTCTTGAAGGCACAGTATTTTGTCTCGACCCGT GGGTCTAACTCTTGAAGGCACAGTATTTTGTCTCGACCCGT < 41bp 1 0.596566234559943 1 0.0931767225265503 experiment 0.806867530880114 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458701 chr2:189458684 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_23862 0 0 1 2 189458678 189458705 mRNA hsa-miR-193a-3p GULP1 miRanda miRanda
2621 chr2 189458684 189458684 1 + A T HNSC 189458701 + 189458681 189458721 41 GGGACTAACTCTTGAAGGCACAGTATTTTGTCTCGACCCGT GGGTCTAACTCTTGAAGGCACAGTATTTTGTCTCGACCCGT < 41bp 1 0.596566234559943 1 0.0931767225265503 experiment 0.806867530880114 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458701 chr2:189458684 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_23862 0 0 1 2 189458682 189458705 mRNA hsa-miR-193b GULP1 miRanda miRanda
2622 chr1 78325024 78325024 1 + G C HNSC 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGACACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA < 41bp 1 0.209356797421082 1 0.142018228769302 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325024 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_23982 0 0 1 3 78325022 78325042 mRNA hsa-miR-31 FAM73A miRanda miRanda
2623 chr1 78325024 78325024 1 + G C HNSC 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGACACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA < 41bp 1 0.209356797421082 1 0.142018228769302 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325024 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_23982 0 0 1 3 78325021 78325044 mRNA hsa-miR-182 FAM73A miRanda miRanda
2624 chr1 78325024 78325024 1 + G C HNSC 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGACACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA < 41bp 1 0.209356797421082 1 0.142018228769302 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325024 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_23982 0 0 1 3 78325012 78325034 mRNA hsa-miR-429 FAM73A miRanda miRanda
2625 chr7 65751528 65751528 1 + G A HNSC 65751509 + 65751489 65751529 41 TGTTTTCAGAGTGGAGAGATCTACAGACCAAGTAATCAAGC TGTTTTCAGAGTGGAGAGATCTACAGACCAAGTAATCAAAC < 41bp 1 0.635732058327088 1 0.442680537700653 experiment 0.728535883345825 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65751509 chr7:65751528 synonymous SNV . 0 40 hm5C_associated_SNPs_23987 0 0 1 3 65751511 65751533 mRNA hsa-miR-149 TPST1 miRanda miRanda
2626 chr7 65751528 65751528 1 + G A HNSC 65751509 + 65751489 65751529 41 TGTTTTCAGAGTGGAGAGATCTACAGACCAAGTAATCAAGC TGTTTTCAGAGTGGAGAGATCTACAGACCAAGTAATCAAAC < 41bp 1 0.635732058327088 1 0.442680537700653 experiment 0.728535883345825 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65751509 chr7:65751528 synonymous SNV . 0 40 hm5C_associated_SNPs_23987 0 0 1 3 65751513 65751534 mRNA hsa-miR-193a-3p TPST1 miRanda miRanda
2627 chr7 65751528 65751528 1 + G A HNSC 65751509 + 65751489 65751529 41 TGTTTTCAGAGTGGAGAGATCTACAGACCAAGTAATCAAGC TGTTTTCAGAGTGGAGAGATCTACAGACCAAGTAATCAAAC < 41bp 1 0.635732058327088 1 0.442680537700653 experiment 0.728535883345825 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65751509 chr7:65751528 synonymous SNV . 0 40 hm5C_associated_SNPs_23987 0 0 1 3 65751513 65751534 mRNA hsa-miR-193b TPST1 miRanda miRanda
2628 chr1 40525048 40525048 1 + A T HNSC 40525031 + 40525011 40525051 41 GGTCCATTATGGCTGACATGCAAAATCTGGTAGAAAGATTG GGTCCATTATGGCTGACATGCAAAATCTGGTAGAAAGTTTG < 41bp 1 0.566609929032918 1 0.70043683052063 experiment 0.866780141934163 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAP1 ENSG00000131236 CDS Human protein_coding chr1:40525031 chr1:40525048 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_24012 0 0 1 1 40525035 40525057 mRNA hsa-miR-150 CAP1 miRanda miRanda
2629 chr8 28906499 28906499 1 + A T HNSC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATTGA < 41bp 1 0.266178621397999 1 0.685808777809143 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906499 synonymous SNV . 0 39 hm5C_associated_SNPs_24024 0 0 1 2 28906494 28906516 mRNA hsa-miR-378 HMBOX1 miRanda miRanda
2630 chr8 28906499 28906499 1 + A T HNSC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATTGA < 41bp 1 0.266178621397999 1 0.685808777809143 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906499 synonymous SNV . 0 39 hm5C_associated_SNPs_24024 0 0 1 2 28906495 28906516 mRNA hsa-miR-422a HMBOX1 miRanda miRanda
2631 chr8 28906499 28906499 1 + A T HNSC 28906512 + 28906492 28906532 41 ATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT ATGGGATTGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT < 41bp 1 0.54382320291201 1 0.52836287021637 experiment 0.912353594175981 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906512 chr8:28906499 synonymous SNV . 0 8 hm5C_associated_SNPs_24025 0 0 1 2 28906494 28906516 mRNA hsa-miR-378 HMBOX1 miRanda miRanda
2632 chr8 28906499 28906499 1 + A T HNSC 28906512 + 28906492 28906532 41 ATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT ATGGGATTGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT < 41bp 1 0.54382320291201 1 0.52836287021637 experiment 0.912353594175981 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906512 chr8:28906499 synonymous SNV . 0 8 hm5C_associated_SNPs_24025 0 0 1 2 28906495 28906516 mRNA hsa-miR-422a HMBOX1 miRanda miRanda
2633 chr9 35660929 35660929 1 + C G HNSC 35660941 + 35660921 35660961 41 ATCTCTCCCCACACAGAGGCCAGCAGACCTCTTCCTGAGGA ATCTCTCCGCACACAGAGGCCAGCAGACCTCTTCCTGAGGA < 41bp 1 0.759810729398915 1 0.2098508477211 experiment 0.480378541202171 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660941 chr9:35660929 synonymous SNV . 0 9 hm5C_associated_SNPs_24026 0 0 0 3 35660921 35660944 mRNA hsa-miR-149 CCDC107 miRanda miRanda
2634 chr9 35660929 35660929 1 + C G HNSC 35660941 + 35660921 35660961 41 ATCTCTCCCCACACAGAGGCCAGCAGACCTCTTCCTGAGGA ATCTCTCCGCACACAGAGGCCAGCAGACCTCTTCCTGAGGA < 41bp 1 0.759810729398915 1 0.2098508477211 experiment 0.480378541202171 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660941 chr9:35660929 synonymous SNV . 0 9 hm5C_associated_SNPs_24026 0 0 0 3 35660906 35660929 mRNA hsa-miR-185 CCDC107 miRanda miRanda
2635 chr9 35660929 35660929 1 + C G HNSC 35660941 + 35660921 35660961 41 ATCTCTCCCCACACAGAGGCCAGCAGACCTCTTCCTGAGGA ATCTCTCCGCACACAGAGGCCAGCAGACCTCTTCCTGAGGA < 41bp 1 0.759810729398915 1 0.2098508477211 experiment 0.480378541202171 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660941 chr9:35660929 synonymous SNV . 0 9 hm5C_associated_SNPs_24026 0 0 0 3 35660912 35660933 mRNA hsa-miR-491-5p CCDC107 miRanda miRanda
2636 chr11 6414491 6414491 1 + C T HNSC 6414500 + 6414480 6414520 41 GGTCTCCGCCTCATCTCTCTCAATATGAATTTTTGTTCCCG GGTCTCCGCCTTATCTCTCTCAATATGAATTTTTGTTCCCG < 41bp 1 0.419801885369215 1 0.702865481376648 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6414500 chr11:6414491 nonsynonymous SNV . 0 12 hm5C_associated_SNPs_24038 0 0 1 1 6414477 6414497 mRNA hsa-miR-143 SMPD1 miRanda miRanda
2637 chr2 173429336 173429336 1 + C G HNSC 173429352 + 173429332 173429372 41 CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC CTGTGACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC < 41bp 1 0.533135222645881 1 0.0444088280200958 experiment 0.933729554708238 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PDK1 ENSG00000152256 CDS Human protein_coding chr2:173429352 chr2:173429336 synonymous SNV . 0 5 hm5C_associated_SNPs_24064 0 0 1 3 173429321 173429343 mRNA hsa-miR-138 PDK1 miRanda miRanda
2638 chr2 173429336 173429336 1 + C G HNSC 173429352 + 173429332 173429372 41 CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC CTGTGACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC < 41bp 1 0.533135222645881 1 0.0444088280200958 experiment 0.933729554708238 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PDK1 ENSG00000152256 CDS Human protein_coding chr2:173429352 chr2:173429336 synonymous SNV . 0 5 hm5C_associated_SNPs_24064 0 0 1 3 173429317 173429339 mRNA hsa-miR-542-3p PDK1 miRanda miRanda
2639 chr2 173429336 173429336 1 + C G HNSC 173429352 + 173429332 173429372 41 CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC CTGTGACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC < 41bp 1 0.533135222645881 1 0.0444088280200958 experiment 0.933729554708238 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PDK1 ENSG00000152256 CDS Human protein_coding chr2:173429352 chr2:173429336 synonymous SNV . 0 5 hm5C_associated_SNPs_24064 0 0 1 3 173429327 173429352 mRNA hsa-miR-543 PDK1 miRanda miRanda
2640 chr5 102472491 102472491 1 + C T HNSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATTAATGACTTGAATATGCAGTATCTCATACAAGATAGG < 41bp 1 0.374908127115578 1 0.180243670940399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472491 synonymous SNV . 0 5 hm5C_associated_SNPs_24087 0 0 1 2 102472489 102472511 mRNA hsa-miR-217 PPIP5K2 miRanda miRanda
2641 chr5 102472491 102472491 1 + C T HNSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATTAATGACTTGAATATGCAGTATCTCATACAAGATAGG < 41bp 1 0.374908127115578 1 0.180243670940399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472491 synonymous SNV . 0 5 hm5C_associated_SNPs_24087 0 0 1 2 102472488 102472509 mRNA hsa-miR-448 PPIP5K2 miRanda miRanda
2642 chr20 398533 398533 1 + C G HNSC 398525 + 398505 398545 41 CTGTCAGCCCGCAACACCTCCCTCAACCCTCAGGAGCTGCA CTGTCAGCCCGCAACACCTCCCTCAACCGTCAGGAGCTGCA < 41bp 1 0.121486574446236 1 0.121772825717926 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBCK1 ENSG00000125826 CDS Human protein_coding chr20:398525 chr20:398533 nonsynonymous SNV 0.997 0 29 hm5C_associated_SNPs_24150 0 0 1 1 398515 398535 mRNA hsa-miR-296-3p RBCK1 miRanda miRanda
2643 chr22 18979485 18979485 1 + A G HNSC 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAGC < 41bp 1 0.111858105173061 1 0.0705478191375732 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979485 . . 0 40 hm5C_associated_SNPs_24162 0 0 1 2 18979485 18979508 mRNA hsa-miR-23a DGCR5 miRanda miRanda
2644 chr22 18979485 18979485 1 + A G HNSC 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAGC < 41bp 1 0.111858105173061 1 0.0705478191375732 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979485 . . 0 40 hm5C_associated_SNPs_24162 0 0 1 2 18979485 18979508 mRNA hsa-miR-23b DGCR5 miRanda miRanda
2645 chr12 98941400 98941400 1 + C T HNSC 98941402 + 98941382 98941422 41 GCAGGCCGGCCATTAGAACTCAGTGATTTCAGGATGGAGGA GCAGGCCGGCCATTAGAATTCAGTGATTTCAGGATGGAGGA < 41bp 1 0.713351147307948 1 0.203604996204376 experiment 0.573297705384104 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMPO ENSG00000120802 CDS Human protein_coding chr12:98941402 chr12:98941400 nonsynonymous SNV 0.998 0 19 hm5C_associated_SNPs_24171 0 0 1 1 98941388 98941410 mRNA hsa-miR-200b TMPO miRanda miRanda
2646 chr11 65273602 65273602 1 + G A HNSC 65273607 + 65273587 65273627 41 AGATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTT AGATGCTGGTGGTTGACACTCCTGGTTTCCAGGACGGGGTT < 41bp 1 0.416762290653619 1 0.236274629831314 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273607 chr11:65273602 . . 0 16 hm5C_associated_SNPs_24189 0 0 0 1 65273592 65273612 lncRNA hsa-miR-665 MALAT1 miRanda starBase2
2647 chr11 65273602 65273602 1 + G A HNSC 65273608 + 65273588 65273628 41 GATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTTC GATGCTGGTGGTTGACACTCCTGGTTTCCAGGACGGGGTTC < 41bp 1 0.610524587228346 1 0.181198835372925 experiment 0.778950825543308 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273608 chr11:65273602 . . 0 15 hm5C_associated_SNPs_24190 0 0 0 1 65273592 65273612 lncRNA hsa-miR-665 MALAT1 miRanda starBase2
2648 chr17 16342900 16342900 1 + G A HNSC 16342881 + 16342861 16342901 41 TAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTGA TAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTAA < 41bp 1 0.12949129927689 1 0.0657915771007538 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342881 chr17:16342900 . . 0 40 hm5C_associated_SNPs_24302 0 0 1 1 16342896 16342916 mRNA hsa-miR-382 NCRNA00188 miRanda miRanda
2649 chr20 42271216 42271216 1 + C T HNSC 42271196 + 42271176 42271216 41 CCAGTAAACTACCAAAGGACCAACAGGATGCCAAACATATC CCAGTAAACTACCAAAGGACCAACAGGATGCCAAACATATT < 41bp 1 0.44740296195893 1 0.216137796640396 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IFT52 ENSG00000101052 CDS Human protein_coding chr20:42271196 chr20:42271216 synonymous SNV . 0 41 hm5C_associated_SNPs_24345 0 0 1 3 42271196 42271217 mRNA hsa-miR-190 IFT52 miRanda miRanda
2650 chr20 42271216 42271216 1 + C T HNSC 42271196 + 42271176 42271216 41 CCAGTAAACTACCAAAGGACCAACAGGATGCCAAACATATC CCAGTAAACTACCAAAGGACCAACAGGATGCCAAACATATT < 41bp 1 0.44740296195893 1 0.216137796640396 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IFT52 ENSG00000101052 CDS Human protein_coding chr20:42271196 chr20:42271216 synonymous SNV . 0 41 hm5C_associated_SNPs_24345 0 0 1 3 42271196 42271218 mRNA hsa-miR-206 IFT52 miRanda miRanda
2651 chr20 42271216 42271216 1 + C T HNSC 42271196 + 42271176 42271216 41 CCAGTAAACTACCAAAGGACCAACAGGATGCCAAACATATC CCAGTAAACTACCAAAGGACCAACAGGATGCCAAACATATT < 41bp 1 0.44740296195893 1 0.216137796640396 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IFT52 ENSG00000101052 CDS Human protein_coding chr20:42271196 chr20:42271216 synonymous SNV . 0 41 hm5C_associated_SNPs_24345 0 0 1 3 42271197 42271217 mRNA hsa-miR-190b IFT52 miRanda miRanda
2652 chr13 49771038 49771038 1 + A T KICH 49771026 + 49771006 49771046 41 TTTCTAGTTTGGACCATTTTCAGAAAAATGTGATATTACTA TTTCTAGTTTGGACCATTTTCAGAAAAATGTGTTATTACTA < 41bp 1 0.685424544566873 1 0.87929368019104 experiment 0.629150910866254 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49771026 chr13:49771038 nonsynonymous SNV 0.996 0 33 hm5C_associated_SNPs_24387 0 0 1 2 49771018 49771039 mRNA hsa-miR-23a FNDC3A miRanda miRanda
2653 chr13 49771038 49771038 1 + A T KICH 49771026 + 49771006 49771046 41 TTTCTAGTTTGGACCATTTTCAGAAAAATGTGATATTACTA TTTCTAGTTTGGACCATTTTCAGAAAAATGTGTTATTACTA < 41bp 1 0.685424544566873 1 0.87929368019104 experiment 0.629150910866254 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49771026 chr13:49771038 nonsynonymous SNV 0.996 0 33 hm5C_associated_SNPs_24387 0 0 1 2 49771018 49771039 mRNA hsa-miR-23b FNDC3A miRanda miRanda
2654 chr10 129866455 129866455 1 + C T KICH 129866472 + 129866452 129866492 41 CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC CTTTGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC < 41bp 1 0.100020123214914 1 0.0980632603168488 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866472 chr10:129866455 synonymous SNV . 0 4 hm5C_associated_SNPs_24393 0 0 0 2 129866449 129866466 mRNA hsa-miR-124 PTPRE miRanda miRanda
2655 chr10 129866455 129866455 1 + C T KICH 129866472 + 129866452 129866492 41 CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC CTTTGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC < 41bp 1 0.100020123214914 1 0.0980632603168488 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866472 chr10:129866455 synonymous SNV . 0 4 hm5C_associated_SNPs_24393 0 0 0 2 129866448 129866466 mRNA hsa-miR-506 PTPRE miRanda miRanda
2656 chr1 24022342 24022342 1 + A T KIRC 24022327 + 24022307 24022347 41 TCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGG TCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCTTTGGG < 41bp 1 0.770634832965359 1 0.472493916749954 experiment 0.458730334069282 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022327 chr1:24022342 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_24428 0 0 1 1 24022340 24022369 mRNA hsa-miR-450a RPL11 miRanda miRanda
2657 chr10 75520019 75520019 1 + G A KIRC 75520010 + 75519990 75520030 41 TGGACAGAGTTTTGGAGGGCCCTCAGTGAGCCAGCCCAACC TGGACAGAGTTTTGGAGGGCCCTCAGTGAACCAGCCCAACC < 41bp 1 0.280412903491139 1 0.0991651117801666 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75520010 chr10:75520019 nonsynonymous SNV 0.959 0 30 hm5C_associated_SNPs_24434 0 0 1 1 75520002 75520024 mRNA hsa-miR-149 SEC24C miRanda miRanda
2658 chrX 7171308 7171308 1 + A G KIRC 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCGAGCATCATCCTGGTGATGGCTGACGA < 41bp 1 0.246227485573662 1 0.0750560760498047 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171308 nonsynonymous SNV 0.167 5 17 hm5C_associated_SNPs_24552 0 0 1 2 7171297 7171319 mRNA hsa-miR-125a-3p STS miRanda miRanda
2659 chrX 7171308 7171308 1 + A G KIRC 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCGAGCATCATCCTGGTGATGGCTGACGA < 41bp 1 0.246227485573662 1 0.0750560760498047 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171308 nonsynonymous SNV 0.167 5 17 hm5C_associated_SNPs_24552 0 0 1 2 7171295 7171316 mRNA hsa-miR-190b STS miRanda miRanda
2660 chr8 22037969 22037969 1 + G A KIRC 22037952 + 22037932 22037972 41 ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGCGC ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGACGC < 41bp 1 0.385044750930085 1 0.124210387468338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037952 chr8:22037969 stopgain 0.991 0 38 hm5C_associated_SNPs_24658 0 0 1 1 22037965 22037984 mRNA hsa-miR-542-3p BMP1 miRanda miRanda
2661 chr3 50005960 50005960 1 + G T KIRP 50005946 + 50005926 50005966 41 CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGT CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAATATAAGT < 41bp 1 0.0882594598773504 1 0.224473655223846 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005946 chr3:50005960 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_24923 0 0 1 4 50005954 50005976 mRNA hsa-miR-320a RBM6 miRanda miRanda
2662 chr3 50005960 50005960 1 + G T KIRP 50005946 + 50005926 50005966 41 CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGT CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAATATAAGT < 41bp 1 0.0882594598773504 1 0.224473655223846 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005946 chr3:50005960 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_24923 0 0 1 4 50005954 50005976 mRNA hsa-miR-320b RBM6 miRanda miRanda
2663 chr3 50005960 50005960 1 + G T KIRP 50005946 + 50005926 50005966 41 CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGT CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAATATAAGT < 41bp 1 0.0882594598773504 1 0.224473655223846 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005946 chr3:50005960 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_24923 0 0 1 4 50005956 50005976 mRNA hsa-miR-320c RBM6 miRanda miRanda
2664 chr3 50005960 50005960 1 + G T KIRP 50005946 + 50005926 50005966 41 CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGT CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAATATAAGT < 41bp 1 0.0882594598773504 1 0.224473655223846 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005946 chr3:50005960 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_24923 0 0 1 4 50005957 50005976 mRNA hsa-miR-320d RBM6 miRanda miRanda
2665 chr7 45112359 45112359 1 + C T KIRP 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACTTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.307863478745071 1 0.051062136888504 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112359 synonymous SNV . 0 3 hm5C_associated_SNPs_24959 0 0 1 7 45112354 45112377 mRNA hsa-miR-149 CCM2 miRanda miRanda
2666 chr7 45112359 45112359 1 + C T KIRP 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACTTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.307863478745071 1 0.051062136888504 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112359 synonymous SNV . 0 3 hm5C_associated_SNPs_24959 0 0 1 7 45112356 45112382 mRNA hsa-miR-302a CCM2 miRanda miRanda
2667 chr7 45112359 45112359 1 + C T KIRP 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACTTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.307863478745071 1 0.051062136888504 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112359 synonymous SNV . 0 3 hm5C_associated_SNPs_24959 0 0 1 7 45112356 45112382 mRNA hsa-miR-302b CCM2 miRanda miRanda
2668 chr7 45112359 45112359 1 + C T KIRP 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACTTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.307863478745071 1 0.051062136888504 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112359 synonymous SNV . 0 3 hm5C_associated_SNPs_24959 0 0 1 7 45112356 45112382 mRNA hsa-miR-302c CCM2 miRanda miRanda
2669 chr7 45112359 45112359 1 + C T KIRP 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACTTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.307863478745071 1 0.051062136888504 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112359 synonymous SNV . 0 3 hm5C_associated_SNPs_24959 0 0 1 7 45112356 45112382 mRNA hsa-miR-302d CCM2 miRanda miRanda
2670 chr7 45112359 45112359 1 + C T KIRP 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACTTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.307863478745071 1 0.051062136888504 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112359 synonymous SNV . 0 3 hm5C_associated_SNPs_24959 0 0 1 7 45112355 45112382 mRNA hsa-miR-373 CCM2 miRanda miRanda
2671 chr7 45112359 45112359 1 + C T KIRP 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACTTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.307863478745071 1 0.051062136888504 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112359 synonymous SNV . 0 3 hm5C_associated_SNPs_24959 0 0 1 7 45112357 45112382 mRNA hsa-miR-520d-3p CCM2 miRanda miRanda
2672 chr3 160122126 160122126 1 + A C LGG 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATGCTTATGAAGTCATTCCTAACAGTAATTTCTATGTAT < 41bp 1 0.111057899554337 1 0.0577127039432526 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122126 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_24972 0 0 1 2 160122116 160122136 mRNA hsa-miR-205 SMC4 miRanda miRanda
2673 chr3 160122126 160122126 1 + A C LGG 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATGCTTATGAAGTCATTCCTAACAGTAATTTCTATGTAT < 41bp 1 0.111057899554337 1 0.0577127039432526 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122126 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_24972 0 0 1 2 160122116 160122127 mRNA hsa-miR-324-5p SMC4 miRanda miRanda
2674 chrX 73046827 73046827 1 - T C LGG 73046824 - 73046804 73046844 41 GGCCTGAAACCAACAAAAGCCTCAAGAGCCAAGAAAACAGA GGCCTGAAACCAACAAAGGCCTCAAGAGCCAAGAAAACAGA < 41bp 1 0.421623252187882 1 0.609633326530457 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046824 chrX:73046827 . . 0 18 hm5C_associated_SNPs_24973 0 0 1 2 73046824 73046846 lncRNA hsa-miR-3140-3p XIST miRanda starBase2
2675 chrX 73046827 73046827 1 - T C LGG 73046824 - 73046804 73046844 41 GGCCTGAAACCAACAAAAGCCTCAAGAGCCAAGAAAACAGA GGCCTGAAACCAACAAAGGCCTCAAGAGCCAAGAAAACAGA < 41bp 1 0.421623252187882 1 0.609633326530457 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046824 chrX:73046827 . . 0 18 hm5C_associated_SNPs_24973 0 0 1 2 73046817 73046839 lncRNA hsa-miR-526b-5p XIST miRanda starBase2
2676 chrX 73046827 73046827 1 - T C LGG 73046834 - 73046814 73046854 41 AGAAGCCTCAGGCCTGAAACCAACAAAAGCCTCAAGAGCCA AGAAGCCTCAGGCCTGAAACCAACAAAGGCCTCAAGAGCCA < 41bp 1 0.587414280553409 1 0.367948114871979 experiment 0.825171438893182 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046834 chrX:73046827 . . 0 28 hm5C_associated_SNPs_24974 0 0 1 2 73046824 73046846 lncRNA hsa-miR-3140-3p XIST miRanda starBase2
2677 chrX 73046827 73046827 1 - T C LGG 73046834 - 73046814 73046854 41 AGAAGCCTCAGGCCTGAAACCAACAAAAGCCTCAAGAGCCA AGAAGCCTCAGGCCTGAAACCAACAAAGGCCTCAAGAGCCA < 41bp 1 0.587414280553409 1 0.367948114871979 experiment 0.825171438893182 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046834 chrX:73046827 . . 0 28 hm5C_associated_SNPs_24974 0 0 1 2 73046817 73046839 lncRNA hsa-miR-526b-5p XIST miRanda starBase2
2678 chrX 73046569 73046569 1 - A T LGG 73046568 - 73046548 73046588 41 GACCCAAGCGAAAAAGGTATCTCAAGACTAACGGCCGGAAT GACCCAAGCGAAAAAGGTAACTCAAGACTAACGGCCGGAAT < 41bp 1 0.673155702069676 1 0.327302992343903 experiment 0.653688595860648 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046568 chrX:73046569 . . 0 20 hm5C_associated_SNPs_25010 0 0 1 1 73046561 73046582 lncRNA hsa-miR-526b-5p XIST miRanda starBase2
2679 chrX 73046569 73046569 1 - A T LGG 73046585 - 73046565 73046605 41 TACCTAGATGGATAGAGGACCCAAGCGAAAAAGGTATCTCA TACCTAGATGGATAGAGGACCCAAGCGAAAAAGGTAACTCA < 41bp 1 0.0854333138305165 1 0.175921678543091 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046585 chrX:73046569 . . 0 37 hm5C_associated_SNPs_25011 0 0 1 1 73046561 73046582 lncRNA hsa-miR-526b-5p XIST miRanda starBase2
2680 chrX 149905114 149905114 1 + A T LGG 149905115 + 149905095 149905135 41 GTGCTTACCCAAATGCAGAACTTGTGTTCTTGGAGATCCAC GTGCTTACCCAAATGCAGATCTTGTGTTCTTGGAGATCCAC < 41bp 1 0.171604877038367 1 0.0352928638458252 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905115 chrX:149905114 nonsynonymous SNV 0.327 2 20 hm5C_associated_SNPs_25083 0 0 1 1 149905091 149905115 mRNA hsa-miR-544 MTMR1 miRanda miRanda
2681 chr22 39382395 39382395 1 + C T LGG 39382388 + 39382368 39382408 41 TTCGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGA TTCGATGAAAATTATGCATTCCTGCACTGCACGCTAAAGGA < 41bp 1 0.0625820666182268 1 0.108186632394791 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39382388 chr22:39382395 nonsynonymous SNV 0.000 0 28 hm5C_associated_SNPs_25116 0 0 0 1 39382389 39382411 mRNA hsa-miR-204 APOBEC3B miRanda miRanda
2682 chr17 1946242 1946242 1 + G A LGG 1946262 + 1946242 1946282 41 GGACACTGACAAAGTCATCCCCTCTCAGGAGAGTGTGCAAC AGACACTGACAAAGTCATCCCCTCTCAGGAGAGTGTGCAAC < 41bp 1 0.0921800791156012 1 0.023706316947937 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OVCA2 ENSG00000262664 CDS Human protein_coding chr17:1946262 chr17:1946242 synonymous SNV . 0 1 hm5C_associated_SNPs_25118 0 0 1 1 1946230 1946252 mRNA hsa-miR-223 DPH1 miRanda miRanda
2683 chr4 53579476 53579476 1 + T G LGG 53579457 + 53579437 53579477 41 AGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTCTC AGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTCGC < 41bp 1 0.721245677072755 1 0.778771638870239 experiment 0.55750864585449 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579457 chr4:53579476 . . 0 40 hm5C_associated_SNPs_25144 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
2684 chr4 53579476 53579476 1 + T G LGG 53579457 + 53579437 53579477 41 AGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTCTC AGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTCGC < 41bp 1 0.721245677072755 1 0.778771638870239 experiment 0.55750864585449 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579457 chr4:53579476 . . 0 40 hm5C_associated_SNPs_25144 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
2685 chr4 53579476 53579476 1 + T G LGG 53579475 + 53579455 53579495 41 CACAGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGA CACAGAAGGGTAAAGTAAGTCGCCATAAAACCCAGAGAAGA < 41bp 1 0.706377333827986 1 0.790135979652405 experiment 0.587245332344028 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579475 chr4:53579476 . . 0 22 hm5C_associated_SNPs_25145 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
2686 chr4 53579476 53579476 1 + T G LGG 53579475 + 53579455 53579495 41 CACAGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGA CACAGAAGGGTAAAGTAAGTCGCCATAAAACCCAGAGAAGA < 41bp 1 0.706377333827986 1 0.790135979652405 experiment 0.587245332344028 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579475 chr4:53579476 . . 0 22 hm5C_associated_SNPs_25145 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
2687 chr4 53579476 53579476 1 + T G LGG 53579477 + 53579457 53579497 41 CAGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGA CAGAAGGGTAAAGTAAGTCGCCATAAAACCCAGAGAAGAGA < 41bp 1 0.114352593915279 1 0.106504619121552 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579477 chr4:53579476 . . 0 20 hm5C_associated_SNPs_25146 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
2688 chr4 53579476 53579476 1 + T G LGG 53579477 + 53579457 53579497 41 CAGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGA CAGAAGGGTAAAGTAAGTCGCCATAAAACCCAGAGAAGAGA < 41bp 1 0.114352593915279 1 0.106504619121552 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579477 chr4:53579476 . . 0 20 hm5C_associated_SNPs_25146 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
2689 chr4 53579476 53579476 1 + T G LGG 53579478 + 53579458 53579498 41 AGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGAC AGAAGGGTAAAGTAAGTCGCCATAAAACCCAGAGAAGAGAC < 41bp 1 0.279689546508079 1 0.20945742726326 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579478 chr4:53579476 . . 0 19 hm5C_associated_SNPs_25147 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
2690 chr4 53579476 53579476 1 + T G LGG 53579478 + 53579458 53579498 41 AGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGAC AGAAGGGTAAAGTAAGTCGCCATAAAACCCAGAGAAGAGAC < 41bp 1 0.279689546508079 1 0.20945742726326 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579478 chr4:53579476 . . 0 19 hm5C_associated_SNPs_25147 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
2691 chr4 53579476 53579476 1 + T G LGG 53579485 + 53579465 53579505 41 TAAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAG TAAAGTAAGTCGCCATAAAACCCAGAGAAGAGACTGGAAAG < 41bp 1 0.391286695865618 1 0.264855831861496 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579485 chr4:53579476 . . 0 12 hm5C_associated_SNPs_25148 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
2692 chr4 53579476 53579476 1 + T G LGG 53579485 + 53579465 53579505 41 TAAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAG TAAAGTAAGTCGCCATAAAACCCAGAGAAGAGACTGGAAAG < 41bp 1 0.391286695865618 1 0.264855831861496 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579485 chr4:53579476 . . 0 12 hm5C_associated_SNPs_25148 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
2693 chr4 53579476 53579476 1 + T G LGG 53579486 + 53579466 53579506 41 AAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGC AAAGTAAGTCGCCATAAAACCCAGAGAAGAGACTGGAAAGC < 41bp 1 0.571550221661269 1 0.401114225387573 experiment 0.856899556677462 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579486 chr4:53579476 . . 0 11 hm5C_associated_SNPs_25149 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
2694 chr4 53579476 53579476 1 + T G LGG 53579486 + 53579466 53579506 41 AAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGC AAAGTAAGTCGCCATAAAACCCAGAGAAGAGACTGGAAAGC < 41bp 1 0.571550221661269 1 0.401114225387573 experiment 0.856899556677462 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579486 chr4:53579476 . . 0 11 hm5C_associated_SNPs_25149 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
2695 chr4 53579476 53579476 1 + T G LGG 53579487 + 53579467 53579507 41 AAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGCT AAGTAAGTCGCCATAAAACCCAGAGAAGAGACTGGAAAGCT < 41bp 1 0.426118435380475 1 0.431349039077759 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579487 chr4:53579476 . . 0 10 hm5C_associated_SNPs_25150 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
2696 chr4 53579476 53579476 1 + T G LGG 53579487 + 53579467 53579507 41 AAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGCT AAGTAAGTCGCCATAAAACCCAGAGAAGAGACTGGAAAGCT < 41bp 1 0.426118435380475 1 0.431349039077759 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579487 chr4:53579476 . . 0 10 hm5C_associated_SNPs_25150 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
2697 chr16 1889339 1889339 1 + G A LGG 1889342 + 1889322 1889362 41 ATCAGTCAGATCAATCAGCACATGGAAACTGAGAAAGACAG ATCAGTCAGATCAATCAACACATGGAAACTGAGAAAGACAG < 41bp 1 0.620523720057697 1 0.169712781906128 experiment 0.758952559884607 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MEIOB ENSG00000162039 CDS Human protein_coding chr16:1889342 chr16:1889339 synonymous SNV . 0 18 hm5C_associated_SNPs_25163 0 0 0 1 1889335 1889355 mRNA hsa-miR-223 FAHD1 miRanda miRanda
2698 chr8 25181376 25181376 1 + C T LGG 25181381 + 25181361 25181401 41 CAGCCAGAGATAAATCGGAGCGAGCATTTGGGGTGGCCTTC CAGCCAGAGATAAATTGGAGCGAGCATTTGGGGTGGCCTTC < 41bp 1 0.180217995711311 1 0.493649005889893 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25181381 chr8:25181376 nonsynonymous SNV 0.968 3 16 hm5C_associated_SNPs_25187 0 0 1 1 25181368 25181381 mRNA hsa-miR-136 DOCK5 miRanda miRanda
2699 chrX 73041569 73041569 1 - A G LGG 73041549 - 73041529 73041569 41 TGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACTCACAG CGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACTCACAG < 41bp 1 0.0728524152069117 1 0.0964775681495667 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041549 chrX:73041569 . . 0 1 hm5C_associated_SNPs_25203 0 0 1 1 73041544 73041569 lncRNA hsa-miR-191-5p XIST miRanda starBase2
2700 chrX 73041569 73041569 1 - A G LGG 73041554 - 73041534 73041574 41 AGGCCTGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACT AGGCCCGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACT < 41bp 1 0.0100185084977392 1 0.0884484052658081 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041554 chrX:73041569 . . 0 6 hm5C_associated_SNPs_25204 0 0 1 1 73041544 73041569 lncRNA hsa-miR-191-5p XIST miRanda starBase2
2701 chrX 73041569 73041569 1 - A G LGG 73041561 - 73041541 73041581 41 TAAATGTAGGCCTGGCTGGGCTTTGACCTTTTCCGTTTTTA TAAATGTAGGCCCGGCTGGGCTTTGACCTTTTCCGTTTTTA < 41bp 1 0.029844691405919 1 0.0431505739688873 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041561 chrX:73041569 . . 0 13 hm5C_associated_SNPs_25205 0 0 1 1 73041544 73041569 lncRNA hsa-miR-191-5p XIST miRanda starBase2
2702 chrX 73041569 73041569 1 - A G LGG 73041566 - 73041546 73041586 41 TTCTCTAAATGTAGGCCTGGCTGGGCTTTGACCTTTTCCGT TTCTCTAAATGTAGGCCCGGCTGGGCTTTGACCTTTTCCGT < 41bp 1 0.389818682342379 1 0.220942437648773 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041566 chrX:73041569 . . 0 18 hm5C_associated_SNPs_25206 0 0 1 1 73041544 73041569 lncRNA hsa-miR-191-5p XIST miRanda starBase2
2703 chr11 118885707 118885707 1 + C G LGG 118885708 + 118885688 118885728 41 TTAATTTTTTTTTCAGGTGCCACACCTCCCTGGATGATCCA TTAATTTTTTTTTCAGGTGGCACACCTCCCTGGATGATCCA < 41bp 1 0.0577136624859311 1 0.0465313792228699 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118885708 chr11:118885707 nonsynonymous SNV 0.992 4 20 hm5C_associated_SNPs_25208 0 0 1 1 118885704 118885717 mRNA hsa-miR-122 CCDC84 miRanda miRanda
2704 chr8 67369316 67369316 1 + T G LGG 67369308 + 67369288 67369328 41 ATTTCGTTTCTCCCCAGCCCCATGGCCTTTCTGTGGTGCTC ATTTCGTTTCTCCCCAGCCCCATGGCCTGTCTGTGGTGCTC < 41bp 1 0.524300534188477 1 0.454606711864471 experiment 0.951398931623047 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67369308 chr8:67369316 synonymous SNV . 0 29 hm5C_associated_SNPs_25220 0 0 0 4 67369308 67369328 mRNA hsa-miR-29a ADHFE1 miRanda miRanda
2705 chr8 67369316 67369316 1 + T G LGG 67369308 + 67369288 67369328 41 ATTTCGTTTCTCCCCAGCCCCATGGCCTTTCTGTGGTGCTC ATTTCGTTTCTCCCCAGCCCCATGGCCTGTCTGTGGTGCTC < 41bp 1 0.524300534188477 1 0.454606711864471 experiment 0.951398931623047 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67369308 chr8:67369316 synonymous SNV . 0 29 hm5C_associated_SNPs_25220 0 0 0 4 67369306 67369328 mRNA hsa-miR-29b ADHFE1 miRanda miRanda
2706 chr8 67369316 67369316 1 + T G LGG 67369308 + 67369288 67369328 41 ATTTCGTTTCTCCCCAGCCCCATGGCCTTTCTGTGGTGCTC ATTTCGTTTCTCCCCAGCCCCATGGCCTGTCTGTGGTGCTC < 41bp 1 0.524300534188477 1 0.454606711864471 experiment 0.951398931623047 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67369308 chr8:67369316 synonymous SNV . 0 29 hm5C_associated_SNPs_25220 0 0 0 4 67369312 67369335 mRNA hsa-miR-184 ADHFE1 miRanda miRanda
2707 chr8 67369316 67369316 1 + T G LGG 67369308 + 67369288 67369328 41 ATTTCGTTTCTCCCCAGCCCCATGGCCTTTCTGTGGTGCTC ATTTCGTTTCTCCCCAGCCCCATGGCCTGTCTGTGGTGCTC < 41bp 1 0.524300534188477 1 0.454606711864471 experiment 0.951398931623047 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67369308 chr8:67369316 synonymous SNV . 0 29 hm5C_associated_SNPs_25220 0 0 0 4 67369308 67369328 mRNA hsa-miR-29c ADHFE1 miRanda miRanda
2708 chr19 10886449 10886449 1 + C T LGG 10886461 + 10886441 10886481 41 CCAGACATCGAGTACCAGATCAAGGACATGATCCTGCAGTT CCAGACATTGAGTACCAGATCAAGGACATGATCCTGCAGTT < 41bp 1 0.644581920194259 1 0.771790862083435 experiment 0.710836159611482 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886461 chr19:10886449 synonymous SNV . 0 9 hm5C_associated_SNPs_25223 0 0 1 2 10886438 10886459 mRNA hsa-miR-378 DNM2 miRanda miRanda
2709 chr19 10886449 10886449 1 + C T LGG 10886461 + 10886441 10886481 41 CCAGACATCGAGTACCAGATCAAGGACATGATCCTGCAGTT CCAGACATTGAGTACCAGATCAAGGACATGATCCTGCAGTT < 41bp 1 0.644581920194259 1 0.771790862083435 experiment 0.710836159611482 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886461 chr19:10886449 synonymous SNV . 0 9 hm5C_associated_SNPs_25223 0 0 1 2 10886437 10886459 mRNA hsa-miR-422a DNM2 miRanda miRanda
2710 chr7 116533072 116533072 1 + A G LGG 116533053 + 116533033 116533073 41 ATAATTGTTTTGCAGATGTTCGGTTACTGCTTAATAATGAC ATAATTGTTTTGCAGATGTTCGGTTACTGCTTAATAATGGC < 41bp 1 0.221532497849308 1 0.451498001813889 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAPZA2 ENSG00000198898 CDS Human protein_coding chr7:116533053 chr7:116533072 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_25234 0 0 1 4 116533058 116533078 mRNA hsa-miR-219-5p CAPZA2 miRanda miRanda
2711 chr7 116533072 116533072 1 + A G LGG 116533053 + 116533033 116533073 41 ATAATTGTTTTGCAGATGTTCGGTTACTGCTTAATAATGAC ATAATTGTTTTGCAGATGTTCGGTTACTGCTTAATAATGGC < 41bp 1 0.221532497849308 1 0.451498001813889 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAPZA2 ENSG00000198898 CDS Human protein_coding chr7:116533053 chr7:116533072 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_25234 0 0 1 4 116533066 116533087 mRNA hsa-miR-125b CAPZA2 miRanda miRanda
2712 chr7 116533072 116533072 1 + A G LGG 116533053 + 116533033 116533073 41 ATAATTGTTTTGCAGATGTTCGGTTACTGCTTAATAATGAC ATAATTGTTTTGCAGATGTTCGGTTACTGCTTAATAATGGC < 41bp 1 0.221532497849308 1 0.451498001813889 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAPZA2 ENSG00000198898 CDS Human protein_coding chr7:116533053 chr7:116533072 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_25234 0 0 1 4 116533064 116533087 mRNA hsa-miR-125a-5p CAPZA2 miRanda miRanda
2713 chr7 116533072 116533072 1 + A G LGG 116533053 + 116533033 116533073 41 ATAATTGTTTTGCAGATGTTCGGTTACTGCTTAATAATGAC ATAATTGTTTTGCAGATGTTCGGTTACTGCTTAATAATGGC < 41bp 1 0.221532497849308 1 0.451498001813889 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAPZA2 ENSG00000198898 CDS Human protein_coding chr7:116533053 chr7:116533072 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_25234 0 0 1 4 116533061 116533083 mRNA hsa-miR-539 CAPZA2 miRanda miRanda
2714 chr2 241533978 241533978 1 + G T LGG 241533998 + 241533978 241534018 41 GGTAGATGCAGCGGTAGCATCTGAGCTCCTGTCCCAGCTCC TGTAGATGCAGCGGTAGCATCTGAGCTCCTGTCCCAGCTCC < 41bp 1 0.755761813813167 1 0.770394206047058 experiment 0.488476372373666 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241533998 chr2:241533978 nonsynonymous SNV 0.196 0 1 hm5C_associated_SNPs_25314 0 0 1 1 241533960 241533979 mRNA hsa-miR-149 CAPN10 miRanda miRanda
2715 chr10 17277379 17277379 1 + A T LGG 17277369 + 17277349 17277389 41 TTGCCACCTACAGGAAGCTGCTGGAAGGCGAGGAGAGCAGG TTGCCACCTACAGGAAGCTGCTGGAAGGCGTGGAGAGCAGG < 41bp 1 0.642247602596448 1 0.64296019077301 experiment 0.715504794807105 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277369 chr10:17277379 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_25315 0 0 1 1 17277376 17277388 mRNA hsa-miR-539 VIM miRanda miRanda
2716 chr10 17277379 17277379 1 + A T LGG 17277386 + 17277366 17277406 41 CTGCTGGAAGGCGAGGAGAGCAGGTAGGGAACTCAGACTTG CTGCTGGAAGGCGTGGAGAGCAGGTAGGGAACTCAGACTTG < 41bp 1 0.662005024789292 1 0.626855671405792 experiment 0.675989950421416 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277386 chr10:17277379 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_25316 0 0 1 1 17277376 17277388 mRNA hsa-miR-539 VIM miRanda miRanda
2717 chr18 13095650 13095650 1 + G T LGG 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.245721152103175 1 0.168605268001556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095650 stopgain 0.029 1 18 hm5C_associated_SNPs_25330 0 0 1 12 13095636 13095658 mRNA hsa-miR-302a CEP192 miRanda miRanda
2718 chr18 13095650 13095650 1 + G T LGG 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.245721152103175 1 0.168605268001556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095650 stopgain 0.029 1 18 hm5C_associated_SNPs_25330 0 0 1 12 13095636 13095658 mRNA hsa-miR-302b CEP192 miRanda miRanda
2719 chr18 13095650 13095650 1 + G T LGG 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.245721152103175 1 0.168605268001556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095650 stopgain 0.029 1 18 hm5C_associated_SNPs_25330 0 0 1 12 13095636 13095658 mRNA hsa-miR-302c CEP192 miRanda miRanda
2720 chr18 13095650 13095650 1 + G T LGG 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.245721152103175 1 0.168605268001556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095650 stopgain 0.029 1 18 hm5C_associated_SNPs_25330 0 0 1 12 13095636 13095658 mRNA hsa-miR-302d CEP192 miRanda miRanda
2721 chr18 13095650 13095650 1 + G T LGG 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.245721152103175 1 0.168605268001556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095650 stopgain 0.029 1 18 hm5C_associated_SNPs_25330 0 0 1 12 13095637 13095658 mRNA hsa-miR-372 CEP192 miRanda miRanda
2722 chr18 13095650 13095650 1 + G T LGG 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.245721152103175 1 0.168605268001556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095650 stopgain 0.029 1 18 hm5C_associated_SNPs_25330 0 0 1 12 13095636 13095658 mRNA hsa-miR-373 CEP192 miRanda miRanda
2723 chr18 13095650 13095650 1 + G T LGG 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.245721152103175 1 0.168605268001556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095650 stopgain 0.029 1 18 hm5C_associated_SNPs_25330 0 0 1 12 13095638 13095658 mRNA hsa-miR-520e CEP192 miRanda miRanda
2724 chr18 13095650 13095650 1 + G T LGG 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.245721152103175 1 0.168605268001556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095650 stopgain 0.029 1 18 hm5C_associated_SNPs_25330 0 0 1 12 13095638 13095658 mRNA hsa-miR-520a-3p CEP192 miRanda miRanda
2725 chr18 13095650 13095650 1 + G T LGG 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.245721152103175 1 0.168605268001556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095650 stopgain 0.029 1 18 hm5C_associated_SNPs_25330 0 0 1 12 13095638 13095658 mRNA hsa-miR-520b CEP192 miRanda miRanda
2726 chr18 13095650 13095650 1 + G T LGG 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.245721152103175 1 0.168605268001556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095650 stopgain 0.029 1 18 hm5C_associated_SNPs_25330 0 0 1 12 13095637 13095658 mRNA hsa-miR-520c-3p CEP192 miRanda miRanda
2727 chr18 13095650 13095650 1 + G T LGG 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.245721152103175 1 0.168605268001556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095650 stopgain 0.029 1 18 hm5C_associated_SNPs_25330 0 0 1 12 13095637 13095658 mRNA hsa-miR-520d-3p CEP192 miRanda miRanda
2728 chr18 13095650 13095650 1 + G T LGG 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.245721152103175 1 0.168605268001556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095650 stopgain 0.029 1 18 hm5C_associated_SNPs_25330 0 0 1 12 13095642 13095658 mRNA hsa-miR-302e CEP192 miRanda miRanda
2729 chr18 13095650 13095650 1 + G T LGG 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.58050774477014 1 0.233888477087021 experiment 0.83898451045972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095650 stopgain 0.029 1 16 hm5C_associated_SNPs_25331 0 0 1 12 13095636 13095658 mRNA hsa-miR-302a CEP192 miRanda miRanda
2730 chr18 13095650 13095650 1 + G T LGG 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.58050774477014 1 0.233888477087021 experiment 0.83898451045972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095650 stopgain 0.029 1 16 hm5C_associated_SNPs_25331 0 0 1 12 13095636 13095658 mRNA hsa-miR-302b CEP192 miRanda miRanda
2731 chr18 13095650 13095650 1 + G T LGG 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.58050774477014 1 0.233888477087021 experiment 0.83898451045972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095650 stopgain 0.029 1 16 hm5C_associated_SNPs_25331 0 0 1 12 13095636 13095658 mRNA hsa-miR-302c CEP192 miRanda miRanda
2732 chr18 13095650 13095650 1 + G T LGG 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.58050774477014 1 0.233888477087021 experiment 0.83898451045972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095650 stopgain 0.029 1 16 hm5C_associated_SNPs_25331 0 0 1 12 13095636 13095658 mRNA hsa-miR-302d CEP192 miRanda miRanda
2733 chr18 13095650 13095650 1 + G T LGG 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.58050774477014 1 0.233888477087021 experiment 0.83898451045972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095650 stopgain 0.029 1 16 hm5C_associated_SNPs_25331 0 0 1 12 13095637 13095658 mRNA hsa-miR-372 CEP192 miRanda miRanda
2734 chr18 13095650 13095650 1 + G T LGG 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.58050774477014 1 0.233888477087021 experiment 0.83898451045972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095650 stopgain 0.029 1 16 hm5C_associated_SNPs_25331 0 0 1 12 13095636 13095658 mRNA hsa-miR-373 CEP192 miRanda miRanda
2735 chr18 13095650 13095650 1 + G T LGG 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.58050774477014 1 0.233888477087021 experiment 0.83898451045972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095650 stopgain 0.029 1 16 hm5C_associated_SNPs_25331 0 0 1 12 13095638 13095658 mRNA hsa-miR-520e CEP192 miRanda miRanda
2736 chr18 13095650 13095650 1 + G T LGG 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.58050774477014 1 0.233888477087021 experiment 0.83898451045972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095650 stopgain 0.029 1 16 hm5C_associated_SNPs_25331 0 0 1 12 13095638 13095658 mRNA hsa-miR-520a-3p CEP192 miRanda miRanda
2737 chr18 13095650 13095650 1 + G T LGG 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.58050774477014 1 0.233888477087021 experiment 0.83898451045972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095650 stopgain 0.029 1 16 hm5C_associated_SNPs_25331 0 0 1 12 13095638 13095658 mRNA hsa-miR-520b CEP192 miRanda miRanda
2738 chr18 13095650 13095650 1 + G T LGG 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.58050774477014 1 0.233888477087021 experiment 0.83898451045972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095650 stopgain 0.029 1 16 hm5C_associated_SNPs_25331 0 0 1 12 13095637 13095658 mRNA hsa-miR-520c-3p CEP192 miRanda miRanda
2739 chr18 13095650 13095650 1 + G T LGG 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.58050774477014 1 0.233888477087021 experiment 0.83898451045972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095650 stopgain 0.029 1 16 hm5C_associated_SNPs_25331 0 0 1 12 13095637 13095658 mRNA hsa-miR-520d-3p CEP192 miRanda miRanda
2740 chr18 13095650 13095650 1 + G T LGG 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.58050774477014 1 0.233888477087021 experiment 0.83898451045972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095650 stopgain 0.029 1 16 hm5C_associated_SNPs_25331 0 0 1 12 13095642 13095658 mRNA hsa-miR-302e CEP192 miRanda miRanda
2741 chr7 65751514 65751514 1 + G A LGG 65751509 + 65751489 65751529 41 TGTTTTCAGAGTGGAGAGATCTACAGACCAAGTAATCAAGC TGTTTTCAGAGTGGAGAGATCTACAAACCAAGTAATCAAGC < 41bp 1 0.548526202571373 1 0.45641353726387 experiment 0.902947594857254 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65751509 chr7:65751514 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_25370 0 0 0 5 65751499 65751520 mRNA hsa-miR-133a TPST1 miRanda miRanda
2742 chr7 65751514 65751514 1 + G A LGG 65751509 + 65751489 65751529 41 TGTTTTCAGAGTGGAGAGATCTACAGACCAAGTAATCAAGC TGTTTTCAGAGTGGAGAGATCTACAAACCAAGTAATCAAGC < 41bp 1 0.548526202571373 1 0.45641353726387 experiment 0.902947594857254 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65751509 chr7:65751514 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_25370 0 0 0 5 65751511 65751533 mRNA hsa-miR-149 TPST1 miRanda miRanda
2743 chr7 65751514 65751514 1 + G A LGG 65751509 + 65751489 65751529 41 TGTTTTCAGAGTGGAGAGATCTACAGACCAAGTAATCAAGC TGTTTTCAGAGTGGAGAGATCTACAAACCAAGTAATCAAGC < 41bp 1 0.548526202571373 1 0.45641353726387 experiment 0.902947594857254 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65751509 chr7:65751514 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_25370 0 0 0 5 65751513 65751534 mRNA hsa-miR-193a-3p TPST1 miRanda miRanda
2744 chr7 65751514 65751514 1 + G A LGG 65751509 + 65751489 65751529 41 TGTTTTCAGAGTGGAGAGATCTACAGACCAAGTAATCAAGC TGTTTTCAGAGTGGAGAGATCTACAAACCAAGTAATCAAGC < 41bp 1 0.548526202571373 1 0.45641353726387 experiment 0.902947594857254 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65751509 chr7:65751514 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_25370 0 0 0 5 65751499 65751520 mRNA hsa-miR-133b TPST1 miRanda miRanda
2745 chr7 65751514 65751514 1 + G A LGG 65751509 + 65751489 65751529 41 TGTTTTCAGAGTGGAGAGATCTACAGACCAAGTAATCAAGC TGTTTTCAGAGTGGAGAGATCTACAAACCAAGTAATCAAGC < 41bp 1 0.548526202571373 1 0.45641353726387 experiment 0.902947594857254 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65751509 chr7:65751514 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_25370 0 0 0 5 65751513 65751534 mRNA hsa-miR-193b TPST1 miRanda miRanda
2746 chr22 35726441 35726441 1 + C T LGG 35726424 + 35726404 35726444 41 ATGAGCAGCTGACAGAGGAGCTGCTCATCGTCAATGACAAT ATGAGCAGCTGACAGAGGAGCTGCTCATCGTCAATGATAAT < 41bp 1 0.122158473143563 1 0.0412736833095551 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35726424 chr22:35726441 synonymous SNV . 0 38 hm5C_associated_SNPs_25408 0 0 1 2 35726426 35726446 mRNA hsa-miR-219-5p TOM1 miRanda miRanda
2747 chr22 35726441 35726441 1 + C T LGG 35726424 + 35726404 35726444 41 ATGAGCAGCTGACAGAGGAGCTGCTCATCGTCAATGACAAT ATGAGCAGCTGACAGAGGAGCTGCTCATCGTCAATGATAAT < 41bp 1 0.122158473143563 1 0.0412736833095551 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35726424 chr22:35726441 synonymous SNV . 0 38 hm5C_associated_SNPs_25408 0 0 1 2 35726439 35726463 mRNA hsa-miR-873 TOM1 miRanda miRanda
2748 chr14 23240666 23240666 1 + C G LIHC 23240646 + 23240626 23240666 41 TTCTCTTCTCCCCTCAGGTCCTTTACGACAGACCTTTACCC TTCTCTTCTCCCCTCAGGTCCTTTACGACAGACCTTTACCG < 41bp 1 0.112358587509796 1 0.0848830938339233 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240646 chr14:23240666 nonsynonymous SNV 0.967 4 41 hm5C_associated_SNPs_25446 0 0 1 1 23240653 23240675 mRNA hsa-miR-296-3p OXA1L miRanda miRanda
2749 chr6 41754516 41754516 1 + C T LIHC 41754513 + 41754493 41754533 41 GGAACAGGGGAGACTGGACTCGACCGAACTGAAGGAAGGGA GGAACAGGGGAGACTGGACTCGATCGAACTGAAGGAAGGGA < 41bp 1 0.246959055571837 1 0.200345098972321 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41754513 chr6:41754516 synonymous SNV . 0 24 hm5C_associated_SNPs_25451 0 0 1 1 41754515 41754537 mRNA hsa-miR-328 TOMM6 miRanda miRanda
2750 chr11 66050524 66050524 1 + T C LIHC 66050523 + 66050503 66050543 41 CAGCTGGTGGTCCCAGAATACTCCATCCACGGCCTCTTCTG CAGCTGGTGGTCCCAGAATACCCCATCCACGGCCTCTTCTG < 41bp 1 0.529103487089583 1 0.119697898626328 experiment 0.941793025820834 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CNIH2 ENSG00000174871 CDS Human protein_coding chr11:66050523 chr11:66050524 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_25479 0 0 1 1 66050506 66050526 mRNA hsa-miR-496 CNIH2 miRanda miRanda
2751 chr3 112714019 112714019 1 + A G LIHC 112714008 + 112713988 112714028 41 ACAAAGAAAATGAATTTTTTCAAAGTTGGAAAACATTTTAC ACAAAGAAAATGAATTTTTTCAAAGTTGGAAGACATTTTAC < 41bp 1 0.597510830595113 1 0.735539615154266 experiment 0.804978338809775 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112714008 chr3:112714019 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_25496 0 0 1 2 112714006 112714035 mRNA hsa-miR-10a GTPBP8 miRanda miRanda
2752 chr3 112714019 112714019 1 + A G LIHC 112714008 + 112713988 112714028 41 ACAAAGAAAATGAATTTTTTCAAAGTTGGAAAACATTTTAC ACAAAGAAAATGAATTTTTTCAAAGTTGGAAGACATTTTAC < 41bp 1 0.597510830595113 1 0.735539615154266 experiment 0.804978338809775 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112714008 chr3:112714019 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_25496 0 0 1 2 112714006 112714035 mRNA hsa-miR-10b GTPBP8 miRanda miRanda
2753 chrX 70674056 70674056 1 + T C LIHC 70674049 + 70674029 70674069 41 GTCAGTATACTAAGACTGCCCAGGAGATTGTGAACGTCTGT GTCAGTATACTAAGACTGCCCAGGAGACTGTGAACGTCTGT < 41bp 1 0.603535036977632 1 0.803241491317749 experiment 0.792929926044736 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF1 ENSG00000147133 CDS Human protein_coding chrX:70674049 chrX:70674056 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_25560 0 0 1 1 70674053 70674073 mRNA hsa-miR-194 DYT3 miRanda miRanda
2754 chr3 50005941 50005941 1 + A G LIHC 50005946 + 50005926 50005966 41 CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGT CTTTCAGAACAGCCAGAGTCCAGTTCAAGACCAAGATAAGT < 41bp 1 0.0881833317289301 1 0.236710667610168 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005946 chr3:50005941 synonymous SNV . 0 16 hm5C_associated_SNPs_25630 0 0 1 2 50005926 50005949 mRNA hsa-miR-378 RBM6 miRanda miRanda
2755 chr3 50005941 50005941 1 + A G LIHC 50005946 + 50005926 50005966 41 CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGT CTTTCAGAACAGCCAGAGTCCAGTTCAAGACCAAGATAAGT < 41bp 1 0.0881833317289301 1 0.236710667610168 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005946 chr3:50005941 synonymous SNV . 0 16 hm5C_associated_SNPs_25630 0 0 1 2 50005925 50005949 mRNA hsa-miR-422a RBM6 miRanda miRanda
2756 chr8 23104294 23104294 1 + A G LIHC 23104304 + 23104284 23104324 41 GAGGACGAGGAGCGCATGTCCTTCCTGTTCTCCGCTTTCAA GAGGACGAGGGGCGCATGTCCTTCCTGTTCTCCGCTTTCAA < 41bp 1 0.182721769649868 1 0.0657308399677277 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23104304 chr8:23104294 nonsynonymous SNV 0.997 4 11 hm5C_associated_SNPs_25690 0 0 1 1 23104285 23104309 mRNA hsa-miR-7 CHMP7 miRanda miRanda
2757 chr7 135272402 135272402 1 + T C LIHC 135272419 + 135272399 135272439 41 CCATTTCACTTAGAAGGGACCTGGAACACTTAATGCTTTTG CCACTTCACTTAGAAGGGACCTGGAACACTTAATGCTTTTG < 41bp 1 0.54430544301665 1 0.520798623561859 experiment 0.9113891139667 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135272419 chr7:135272402 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_25739 0 0 1 1 135272386 135272407 mRNA hsa-miR-203 NUP205 miRanda miRanda
2758 chr14 102805186 102805186 1 + C A LIHC 102805183 + 102805163 102805203 41 CATTAGGAATCACAGAATTCCTACGGAAGAAAGAAATACAC CATTAGGAATCACAGAATTCCTAAGGAAGAAAGAAATACAC < 41bp 1 0.403674798261729 1 0.611805379390717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102805183 chr14:102805186 synonymous SNV . 0 24 hm5C_associated_SNPs_25820 0 0 1 1 102805171 102805191 mRNA hsa-miR-384 ZNF839 miRanda miRanda
2759 chr9 131011001 131011001 1 + C A LIHC 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACCGTGAGGGACCTCATGCACAAGACCATCATG < 41bp 1 0.378632631085462 1 0.0961782932281494 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131011001 nonsynonymous SNV 0.995 4 28 hm5C_associated_SNPs_25860 0 0 1 2 131010999 131011021 mRNA hsa-miR-18a DNM1 miRanda miRanda
2760 chr9 131011001 131011001 1 + C A LIHC 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACCGTGAGGGACCTCATGCACAAGACCATCATG < 41bp 1 0.378632631085462 1 0.0961782932281494 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131011001 nonsynonymous SNV 0.995 4 28 hm5C_associated_SNPs_25860 0 0 1 2 131010999 131011021 mRNA hsa-miR-18b DNM1 miRanda miRanda
2761 chr1 110210742 110210742 1 + C T LIHC 110210743 + 110210723 110210763 41 ACAGCAACCAGCACCATGCCCATGACACTGGGGTACTGGAA ACAGCAACCAGCACCATGCTCATGACACTGGGGTACTGGAA < 41bp 1 0.701509455848847 1 0.178081274032593 experiment 0.596981088302305 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSTM2 ENSG00000213366 CDS Human protein_coding chr1:110210743 chr1:110210742 nonsynonymous SNV 0.042 1 20 hm5C_associated_SNPs_25888 0 0 1 2 110210732 110210754 mRNA hsa-miR-199a-5p GSTM2 miRanda miRanda
2762 chr1 110210742 110210742 1 + C T LIHC 110210743 + 110210723 110210763 41 ACAGCAACCAGCACCATGCCCATGACACTGGGGTACTGGAA ACAGCAACCAGCACCATGCTCATGACACTGGGGTACTGGAA < 41bp 1 0.701509455848847 1 0.178081274032593 experiment 0.596981088302305 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSTM2 ENSG00000213366 CDS Human protein_coding chr1:110210743 chr1:110210742 nonsynonymous SNV 0.042 1 20 hm5C_associated_SNPs_25888 0 0 1 2 110210732 110210754 mRNA hsa-miR-199b-5p GSTM2 miRanda miRanda
2763 chr12 88439522 88439522 1 + A G LIHC 88439525 + 88439505 88439545 41 TTAGAACAAACACTGGAACTCATAGGAACAAATATCAATGG TTAGAACAAACACTGGAGCTCATAGGAACAAATATCAATGG < 41bp 1 0.41986679631235 1 0.252210050821304 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C12orf29 ENSG00000133641 CDS Human protein_coding chr12:88439525 chr12:88439522 synonymous SNV . 0 18 hm5C_associated_SNPs_25897 0 0 1 1 88439514 88439536 mRNA hsa-miR-375 C12orf29 miRanda miRanda
2764 chr11 61725744 61725744 1 + T C LIHC 61725725 + 61725705 61725745 41 GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGTT GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGCT < 41bp 1 0.211441317105485 1 0.280251920223236 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61725725 chr11:61725744 nonsynonymous SNV 0.999 5 40 hm5C_associated_SNPs_25945 0 0 0 1 61725736 61725758 mRNA hsa-miR-376c BEST1 miRanda miRanda
2765 chr3 9976551 9976551 1 + A G LIHC 9976545 + 9976525 9976565 41 GAGAGAACCATCCGGGACAACTTTGGAGGTGGAAACACTGC GAGAGAACCATCCGGGACAACTTTGGGGGTGGAAACACTGC < 41bp 1 0.114312620549392 1 0.163980185985565 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976545 chr3:9976551 synonymous SNV . 0 27 hm5C_associated_SNPs_25975 0 0 1 4 9976546 9976567 mRNA hsa-miR-34a CRELD1 miRanda miRanda
2766 chr3 9976551 9976551 1 + A G LIHC 9976545 + 9976525 9976565 41 GAGAGAACCATCCGGGACAACTTTGGAGGTGGAAACACTGC GAGAGAACCATCCGGGACAACTTTGGGGGTGGAAACACTGC < 41bp 1 0.114312620549392 1 0.163980185985565 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976545 chr3:9976551 synonymous SNV . 0 27 hm5C_associated_SNPs_25975 0 0 1 4 9976545 9976567 mRNA hsa-miR-34c-5p CRELD1 miRanda miRanda
2767 chr3 9976551 9976551 1 + A G LIHC 9976545 + 9976525 9976565 41 GAGAGAACCATCCGGGACAACTTTGGAGGTGGAAACACTGC GAGAGAACCATCCGGGACAACTTTGGGGGTGGAAACACTGC < 41bp 1 0.114312620549392 1 0.163980185985565 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976545 chr3:9976551 synonymous SNV . 0 27 hm5C_associated_SNPs_25975 0 0 1 4 9976548 9976567 mRNA hsa-miR-449a CRELD1 miRanda miRanda
2768 chr3 9976551 9976551 1 + A G LIHC 9976545 + 9976525 9976565 41 GAGAGAACCATCCGGGACAACTTTGGAGGTGGAAACACTGC GAGAGAACCATCCGGGACAACTTTGGGGGTGGAAACACTGC < 41bp 1 0.114312620549392 1 0.163980185985565 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976545 chr3:9976551 synonymous SNV . 0 27 hm5C_associated_SNPs_25975 0 0 1 4 9976548 9976567 mRNA hsa-miR-449b CRELD1 miRanda miRanda
2769 chr14 75190045 75190045 1 + A C LIHC 75190025 + 75190005 75190045 41 CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTA CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTC < 41bp 1 0.748378597740862 1 0.239390701055527 experiment 0.503242804518277 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190025 chr14:75190045 synonymous SNV . 0 41 hm5C_associated_SNPs_25999 0 0 1 2 75190034 75190047 mRNA hsa-miR-182 FCF1 miRanda miRanda
2770 chr14 75190045 75190045 1 + A C LIHC 75190025 + 75190005 75190045 41 CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTA CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTC < 41bp 1 0.748378597740862 1 0.239390701055527 experiment 0.503242804518277 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190025 chr14:75190045 synonymous SNV . 0 41 hm5C_associated_SNPs_25999 0 0 1 2 75190041 75190047 mRNA hsa-miR-127-3p FCF1 miRanda miRanda
2771 chr12 57910031 57910031 1 + A C LIHC 57910022 + 57910002 57910042 41 CTGGTGATAACTTTGTTGTTCTCCAGGCAAAAACGTCCCCG CTGGTGATAACTTTGTTGTTCTCCAGGCACAAACGTCCCCG < 41bp 1 0.450144915141568 1 0.819933533668518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57910022 chr12:57910031 nonsynonymous SNV 0.006 1 30 hm5C_associated_SNPs_26086 0 0 1 1 57910018 57910035 mRNA hsa-miR-129-5p MARS miRanda miRanda
2772 chr5 7878172 7878172 1 + G T LIHC 7878185 + 7878165 7878205 41 ATCACCTGCATCCTCGAGGACAGACCTTGTGAAGTCAGAGC ATCACCTTCATCCTCGAGGACAGACCTTGTGAAGTCAGAGC < 41bp 1 0.277367757283214 1 0.199733436107635 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7878185 chr5:7878172 nonsynonymous SNV 0.000 0 8 hm5C_associated_SNPs_26096 0 0 1 1 7878152 7878173 mRNA hsa-miR-125a-3p MTRR miRanda miRanda
2773 chr5 7878172 7878172 1 + G T LIHC 7878190 + 7878170 7878210 41 CTGCATCCTCGAGGACAGACCTTGTGAAGTCAGAGCTGCTA CTTCATCCTCGAGGACAGACCTTGTGAAGTCAGAGCTGCTA < 41bp 1 0.57575349002156 1 0.0476958155632019 experiment 0.84849301995688 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7878190 chr5:7878172 nonsynonymous SNV 0.000 0 3 hm5C_associated_SNPs_26097 0 0 1 1 7878152 7878173 mRNA hsa-miR-125a-3p MTRR miRanda miRanda
2774 chr9 78772069 78772069 1 + G A LUAD 78772063 + 78772043 78772083 41 GCACGTGTGTGTGGAGAGCACAGACCGACAAATCAAGTAAT GCACGTGTGTGTGGAGAGCACAGACCAACAAATCAAGTAAT < 41bp 1 0.236519163167084 1 0.315087139606476 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78772063 chr9:78772069 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_26151 0 0 0 1 78772066 78772078 mRNA hsa-miR-219-5p PCSK5 miRanda miRanda
2775 chrX 73044544 73044544 1 - C A LUAD 73044553 - 73044533 73044573 41 GAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAATGT GAGATCCAGACCGAAAGTCACTTAATTCATCTTGCGAATGT < 41bp 1 0.130063910808732 1 0.031955897808075 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044553 chrX:73044544 . . 0 30 hm5C_associated_SNPs_26231 0 0 1 1 73044527 73044550 lncRNA hsa-miR-6835-3p XIST miRanda starBase2
2776 chrX 73044544 73044544 1 - C A LUAD 73044555 - 73044535 73044575 41 GTGAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAAT GTGAGATCCAGACCGAAAGTCACTTAATTCATCTTGCGAAT < 41bp 1 0.0767115049419079 1 0.0437181890010834 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044555 chrX:73044544 . . 0 32 hm5C_associated_SNPs_26232 0 0 1 1 73044527 73044550 lncRNA hsa-miR-6835-3p XIST miRanda starBase2
2777 chrX 73046470 73046470 1 - G T LUAD 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAA < 41bp 1 0.605874590821604 1 0.707633137702942 experiment 0.788250818356792 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046470 . . 0 41 hm5C_associated_SNPs_26233 0 0 1 11 73046461 73046479 lncRNA hsa-let-7b-5p XIST miRanda starBase2
2778 chrX 73046470 73046470 1 - G T LUAD 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAA < 41bp 1 0.605874590821604 1 0.707633137702942 experiment 0.788250818356792 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046470 . . 0 41 hm5C_associated_SNPs_26233 0 0 1 11 73046461 73046479 lncRNA hsa-let-7c-5p XIST miRanda starBase2
2779 chrX 73046470 73046470 1 - G T LUAD 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAA < 41bp 1 0.605874590821604 1 0.707633137702942 experiment 0.788250818356792 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046470 . . 0 41 hm5C_associated_SNPs_26233 0 0 1 11 73046461 73046480 lncRNA hsa-let-7d-5p XIST miRanda starBase2
2780 chrX 73046470 73046470 1 - G T LUAD 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAA < 41bp 1 0.605874590821604 1 0.707633137702942 experiment 0.788250818356792 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046470 . . 0 41 hm5C_associated_SNPs_26233 0 0 1 11 73046461 73046481 lncRNA hsa-let-7e-5p XIST miRanda starBase2
2781 chrX 73046470 73046470 1 - G T LUAD 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAA < 41bp 1 0.605874590821604 1 0.707633137702942 experiment 0.788250818356792 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046470 . . 0 41 hm5C_associated_SNPs_26233 0 0 1 11 73046461 73046481 lncRNA hsa-let-7f-5p XIST miRanda starBase2
2782 chrX 73046470 73046470 1 - G T LUAD 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAA < 41bp 1 0.605874590821604 1 0.707633137702942 experiment 0.788250818356792 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046470 . . 0 41 hm5C_associated_SNPs_26233 0 0 1 11 73046461 73046481 lncRNA hsa-let-7g-5p XIST miRanda starBase2
2783 chrX 73046470 73046470 1 - G T LUAD 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAA < 41bp 1 0.605874590821604 1 0.707633137702942 experiment 0.788250818356792 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046470 . . 0 41 hm5C_associated_SNPs_26233 0 0 1 11 73046461 73046481 lncRNA hsa-let-7i-5p XIST miRanda starBase2
2784 chrX 73046470 73046470 1 - G T LUAD 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAA < 41bp 1 0.605874590821604 1 0.707633137702942 experiment 0.788250818356792 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046470 . . 0 41 hm5C_associated_SNPs_26233 0 0 1 11 73046461 73046480 lncRNA hsa-miR-4458 XIST miRanda starBase2
2785 chrX 73046470 73046470 1 - G T LUAD 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAA < 41bp 1 0.605874590821604 1 0.707633137702942 experiment 0.788250818356792 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046470 . . 0 41 hm5C_associated_SNPs_26233 0 0 1 11 73046461 73046476 lncRNA hsa-miR-4500 XIST miRanda starBase2
2786 chrX 73046470 73046470 1 - G T LUAD 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAA < 41bp 1 0.605874590821604 1 0.707633137702942 experiment 0.788250818356792 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046470 . . 0 41 hm5C_associated_SNPs_26233 0 0 1 11 73046461 73046482 lncRNA hsa-miR-98-5p XIST miRanda starBase2
2787 chrX 73046470 73046470 1 - G T LUAD 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAA < 41bp 1 0.605874590821604 1 0.707633137702942 experiment 0.788250818356792 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046470 . . 0 41 hm5C_associated_SNPs_26233 0 0 1 11 73046467 73046487 lncRNA hsa-miR-629-5p XIST miRanda starBase2
2788 chr1 76255022 76255022 1 + A T LUAD 76255012 + 76254992 76255032 41 CTAGTATCGGACATGATCCTCATCTTTTATACACTCTTAGT CTAGTATCGGACATGATCCTCATCTTTTATTCACTCTTAGT < 41bp 1 0.193446105573816 1 0.0396080017089844 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255012 chr1:76255022 nonsynonymous SNV 0.997 4 31 hm5C_associated_SNPs_26312 0 0 1 1 76255008 76255028 mRNA hsa-miR-202 RABGGTB miRanda miRanda
2789 chrX 73046712 73046712 1 - C A LUAD 73046709 - 73046689 73046729 41 GGACAGGACACATGGAAGGCCTAAGAACTGAGACTTGTGAC GGACAGGACACATGGAATGCCTAAGAACTGAGACTTGTGAC < 41bp 1 0.355574762855813 1 0.303103536367416 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046709 chrX:73046712 . . 0 18 hm5C_associated_SNPs_26411 0 0 1 2 73046707 73046727 lncRNA hsa-miR-1245b-5p XIST miRanda starBase2
2790 chrX 73046712 73046712 1 - C A LUAD 73046709 - 73046689 73046729 41 GGACAGGACACATGGAAGGCCTAAGAACTGAGACTTGTGAC GGACAGGACACATGGAATGCCTAAGAACTGAGACTTGTGAC < 41bp 1 0.355574762855813 1 0.303103536367416 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046709 chrX:73046712 . . 0 18 hm5C_associated_SNPs_26411 0 0 1 2 73046707 73046729 lncRNA hsa-miR-3142 XIST miRanda starBase2
2791 chrX 73046712 73046712 1 - C A LUAD 73046721 - 73046701 73046741 41 TCTTAAGACCTGGGACAGGACACATGGAAGGCCTAAGAACT TCTTAAGACCTGGGACAGGACACATGGAATGCCTAAGAACT < 41bp 1 0.202455826449751 1 0.0989247262477875 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046721 chrX:73046712 . . 0 30 hm5C_associated_SNPs_26412 0 0 1 2 73046707 73046727 lncRNA hsa-miR-1245b-5p XIST miRanda starBase2
2792 chrX 73046712 73046712 1 - C A LUAD 73046721 - 73046701 73046741 41 TCTTAAGACCTGGGACAGGACACATGGAAGGCCTAAGAACT TCTTAAGACCTGGGACAGGACACATGGAATGCCTAAGAACT < 41bp 1 0.202455826449751 1 0.0989247262477875 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046721 chrX:73046712 . . 0 30 hm5C_associated_SNPs_26412 0 0 1 2 73046707 73046729 lncRNA hsa-miR-3142 XIST miRanda starBase2
2793 chrX 73046712 73046712 1 - C A LUAD 73046726 - 73046706 73046746 41 AGAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA AGAAGTCTTAAGACCTGGGACAGGACACATGGAATGCCTAA < 41bp 1 0.598057891619468 1 0.503252685070038 experiment 0.803884216761063 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046726 chrX:73046712 . . 0 35 hm5C_associated_SNPs_26413 0 0 1 2 73046707 73046727 lncRNA hsa-miR-1245b-5p XIST miRanda starBase2
2794 chrX 73046712 73046712 1 - C A LUAD 73046726 - 73046706 73046746 41 AGAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA AGAAGTCTTAAGACCTGGGACAGGACACATGGAATGCCTAA < 41bp 1 0.598057891619468 1 0.503252685070038 experiment 0.803884216761063 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046726 chrX:73046712 . . 0 35 hm5C_associated_SNPs_26413 0 0 1 2 73046707 73046729 lncRNA hsa-miR-3142 XIST miRanda starBase2
2795 chr11 65270747 65270747 1 + T A LUAD 65270750 + 65270730 65270770 41 TTCTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCC TTCTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCC < 41bp 1 0.275293850082593 1 0.0458633601665497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270750 chr11:65270747 . . 0 18 hm5C_associated_SNPs_26414 0 0 1 8 65270735 65270756 lncRNA hsa-miR-106a-5p MALAT1 miRanda starBase2
2796 chr11 65270747 65270747 1 + T A LUAD 65270750 + 65270730 65270770 41 TTCTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCC TTCTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCC < 41bp 1 0.275293850082593 1 0.0458633601665497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270750 chr11:65270747 . . 0 18 hm5C_associated_SNPs_26414 0 0 1 8 65270736 65270756 lncRNA hsa-miR-106b-5p MALAT1 miRanda starBase2
2797 chr11 65270747 65270747 1 + T A LUAD 65270750 + 65270730 65270770 41 TTCTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCC TTCTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCC < 41bp 1 0.275293850082593 1 0.0458633601665497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270750 chr11:65270747 . . 0 18 hm5C_associated_SNPs_26414 0 0 1 8 65270735 65270756 lncRNA hsa-miR-17-5p MALAT1 miRanda starBase2
2798 chr11 65270747 65270747 1 + T A LUAD 65270750 + 65270730 65270770 41 TTCTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCC TTCTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCC < 41bp 1 0.275293850082593 1 0.0458633601665497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270750 chr11:65270747 . . 0 18 hm5C_associated_SNPs_26414 0 0 1 8 65270735 65270756 lncRNA hsa-miR-20a-5p MALAT1 miRanda starBase2
2799 chr11 65270747 65270747 1 + T A LUAD 65270750 + 65270730 65270770 41 TTCTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCC TTCTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCC < 41bp 1 0.275293850082593 1 0.0458633601665497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270750 chr11:65270747 . . 0 18 hm5C_associated_SNPs_26414 0 0 1 8 65270735 65270756 lncRNA hsa-miR-20b-5p MALAT1 miRanda starBase2
2800 chr11 65270747 65270747 1 + T A LUAD 65270750 + 65270730 65270770 41 TTCTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCC TTCTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCC < 41bp 1 0.275293850082593 1 0.0458633601665497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270750 chr11:65270747 . . 0 18 hm5C_associated_SNPs_26414 0 0 1 8 65270735 65270756 lncRNA hsa-miR-519d-3p MALAT1 miRanda starBase2
2801 chr11 65270747 65270747 1 + T A LUAD 65270750 + 65270730 65270770 41 TTCTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCC TTCTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCC < 41bp 1 0.275293850082593 1 0.0458633601665497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270750 chr11:65270747 . . 0 18 hm5C_associated_SNPs_26414 0 0 1 8 65270735 65270756 lncRNA hsa-miR-526b-3p MALAT1 miRanda starBase2
2802 chr11 65270747 65270747 1 + T A LUAD 65270750 + 65270730 65270770 41 TTCTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCC TTCTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCC < 41bp 1 0.275293850082593 1 0.0458633601665497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270750 chr11:65270747 . . 0 18 hm5C_associated_SNPs_26414 0 0 1 8 65270734 65270756 lncRNA hsa-miR-93-5p MALAT1 miRanda starBase2
2803 chr11 65270747 65270747 1 + T A LUAD 65270752 + 65270732 65270772 41 CTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCCCT CTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCCCT < 41bp 1 0.0673897465303113 1 0.027358740568161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270752 chr11:65270747 . . 0 16 hm5C_associated_SNPs_26415 0 0 1 8 65270735 65270756 lncRNA hsa-miR-106a-5p MALAT1 miRanda starBase2
2804 chr11 65270747 65270747 1 + T A LUAD 65270752 + 65270732 65270772 41 CTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCCCT CTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCCCT < 41bp 1 0.0673897465303113 1 0.027358740568161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270752 chr11:65270747 . . 0 16 hm5C_associated_SNPs_26415 0 0 1 8 65270736 65270756 lncRNA hsa-miR-106b-5p MALAT1 miRanda starBase2
2805 chr11 65270747 65270747 1 + T A LUAD 65270752 + 65270732 65270772 41 CTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCCCT CTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCCCT < 41bp 1 0.0673897465303113 1 0.027358740568161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270752 chr11:65270747 . . 0 16 hm5C_associated_SNPs_26415 0 0 1 8 65270735 65270756 lncRNA hsa-miR-17-5p MALAT1 miRanda starBase2
2806 chr11 65270747 65270747 1 + T A LUAD 65270752 + 65270732 65270772 41 CTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCCCT CTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCCCT < 41bp 1 0.0673897465303113 1 0.027358740568161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270752 chr11:65270747 . . 0 16 hm5C_associated_SNPs_26415 0 0 1 8 65270735 65270756 lncRNA hsa-miR-20a-5p MALAT1 miRanda starBase2
2807 chr11 65270747 65270747 1 + T A LUAD 65270752 + 65270732 65270772 41 CTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCCCT CTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCCCT < 41bp 1 0.0673897465303113 1 0.027358740568161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270752 chr11:65270747 . . 0 16 hm5C_associated_SNPs_26415 0 0 1 8 65270735 65270756 lncRNA hsa-miR-20b-5p MALAT1 miRanda starBase2
2808 chr11 65270747 65270747 1 + T A LUAD 65270752 + 65270732 65270772 41 CTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCCCT CTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCCCT < 41bp 1 0.0673897465303113 1 0.027358740568161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270752 chr11:65270747 . . 0 16 hm5C_associated_SNPs_26415 0 0 1 8 65270735 65270756 lncRNA hsa-miR-519d-3p MALAT1 miRanda starBase2
2809 chr11 65270747 65270747 1 + T A LUAD 65270752 + 65270732 65270772 41 CTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCCCT CTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCCCT < 41bp 1 0.0673897465303113 1 0.027358740568161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270752 chr11:65270747 . . 0 16 hm5C_associated_SNPs_26415 0 0 1 8 65270735 65270756 lncRNA hsa-miR-526b-3p MALAT1 miRanda starBase2
2810 chr11 65270747 65270747 1 + T A LUAD 65270752 + 65270732 65270772 41 CTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCCCT CTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCCCT < 41bp 1 0.0673897465303113 1 0.027358740568161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270752 chr11:65270747 . . 0 16 hm5C_associated_SNPs_26415 0 0 1 8 65270734 65270756 lncRNA hsa-miR-93-5p MALAT1 miRanda starBase2
2811 chr2 197541345 197541345 1 + G C LUAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTCTGCAAAAAGAGCTGCTAGAATCAACTATTGCA < 41bp 1 0.236060001583348 1 0.0744020342826843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541345 nonsynonymous SNV 0.009 0 9 hm5C_associated_SNPs_26586 0 0 1 8 197541341 197541362 mRNA hsa-miR-15a CCDC150 miRanda miRanda
2812 chr2 197541345 197541345 1 + G C LUAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTCTGCAAAAAGAGCTGCTAGAATCAACTATTGCA < 41bp 1 0.236060001583348 1 0.0744020342826843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541345 nonsynonymous SNV 0.009 0 9 hm5C_associated_SNPs_26586 0 0 1 8 197541341 197541362 mRNA hsa-miR-16 CCDC150 miRanda miRanda
2813 chr2 197541345 197541345 1 + G C LUAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTCTGCAAAAAGAGCTGCTAGAATCAACTATTGCA < 41bp 1 0.236060001583348 1 0.0744020342826843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541345 nonsynonymous SNV 0.009 0 9 hm5C_associated_SNPs_26586 0 0 1 8 197541333 197541354 mRNA hsa-miR-129-5p CCDC150 miRanda miRanda
2814 chr2 197541345 197541345 1 + G C LUAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTCTGCAAAAAGAGCTGCTAGAATCAACTATTGCA < 41bp 1 0.236060001583348 1 0.0744020342826843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541345 nonsynonymous SNV 0.009 0 9 hm5C_associated_SNPs_26586 0 0 1 8 197541341 197541362 mRNA hsa-miR-15b CCDC150 miRanda miRanda
2815 chr2 197541345 197541345 1 + G C LUAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTCTGCAAAAAGAGCTGCTAGAATCAACTATTGCA < 41bp 1 0.236060001583348 1 0.0744020342826843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541345 nonsynonymous SNV 0.009 0 9 hm5C_associated_SNPs_26586 0 0 1 8 197541342 197541362 mRNA hsa-miR-195 CCDC150 miRanda miRanda
2816 chr2 197541345 197541345 1 + G C LUAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTCTGCAAAAAGAGCTGCTAGAATCAACTATTGCA < 41bp 1 0.236060001583348 1 0.0744020342826843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541345 nonsynonymous SNV 0.009 0 9 hm5C_associated_SNPs_26586 0 0 1 8 197541341 197541362 mRNA hsa-miR-424 CCDC150 miRanda miRanda
2817 chr2 197541345 197541345 1 + G C LUAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTCTGCAAAAAGAGCTGCTAGAATCAACTATTGCA < 41bp 1 0.236060001583348 1 0.0744020342826843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541345 nonsynonymous SNV 0.009 0 9 hm5C_associated_SNPs_26586 0 0 1 8 197541340 197541362 mRNA hsa-miR-503 CCDC150 miRanda miRanda
2818 chr2 197541345 197541345 1 + G C LUAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTCTGCAAAAAGAGCTGCTAGAATCAACTATTGCA < 41bp 1 0.236060001583348 1 0.0744020342826843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541345 nonsynonymous SNV 0.009 0 9 hm5C_associated_SNPs_26586 0 0 1 8 197541340 197541366 mRNA hsa-miR-544 CCDC150 miRanda miRanda
2819 chr3 20019888 20019888 1 + G T LUAD 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATTGCAATAGGTAAGATTAATATCT < 41bp 1 0.230241934939371 1 0.197461932897568 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019888 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_26628 0 0 0 2 20019888 20019895 mRNA hsa-miR-182 RAB5A miRanda miRanda
2820 chr3 20019888 20019888 1 + G T LUAD 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATTGCAATAGGTAAGATTAATATCT < 41bp 1 0.230241934939371 1 0.197461932897568 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019888 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_26628 0 0 0 2 20019888 20019895 mRNA hsa-miR-9 RAB5A miRanda miRanda
2821 chr9 15444672 15444672 1 + G A LUAD 15444686 + 15444666 15444706 41 CTATCTGTGAATATCTTGTACCCTGTTATATTTCATAAGGT CTATCTATGAATATCTTGTACCCTGTTATATTTCATAAGGT < 41bp 1 0.0978050011959939 1 0.047975480556488 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15444686 chr9:15444672 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_26632 0 0 1 2 15444654 15444676 mRNA hsa-miR-27a SNAPC3 miRanda miRanda
2822 chr9 15444672 15444672 1 + G A LUAD 15444686 + 15444666 15444706 41 CTATCTGTGAATATCTTGTACCCTGTTATATTTCATAAGGT CTATCTATGAATATCTTGTACCCTGTTATATTTCATAAGGT < 41bp 1 0.0978050011959939 1 0.047975480556488 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15444686 chr9:15444672 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_26632 0 0 1 2 15444654 15444676 mRNA hsa-miR-27b SNAPC3 miRanda miRanda
2823 chr6 161470184 161470184 1 + A T LUAD 161470199 + 161470179 161470219 41 CAGATATTATTAATGAAATCCTTACTTTCAAAGTCGACTAT CAGATTTTATTAATGAAATCCTTACTTTCAAAGTCGACTAT < 41bp 1 0.0623703582617717 1 0.0436903536319733 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161470199 chr6:161470184 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_26687 0 0 1 1 161470179 161470200 mRNA hsa-miR-876-5p MAP3K4 miRanda miRanda
2824 chr16 56667670 56667670 1 + C T LUAD 56667667 + 56667647 56667687 41 TCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTGCCCCGTGGG TCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTGCCCCGTGGG < 41bp 1 0.133145821723167 1 0.0779502391815186 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MT1M ENSG00000205364 CDS Human protein_coding chr16:56667667 chr16:56667670 synonymous SNV . 0 24 hm5C_associated_SNPs_26704 0 0 0 1 56667663 56667679 mRNA hsa-miR-214 MT1M miRanda miRanda
2825 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312537 16312558 mRNA hsa-miR-17 OXNAD1 miRanda miRanda
2826 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312537 16312558 mRNA hsa-miR-20a OXNAD1 miRanda miRanda
2827 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312537 16312558 mRNA hsa-miR-93 OXNAD1 miRanda miRanda
2828 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312537 16312558 mRNA hsa-miR-106a OXNAD1 miRanda miRanda
2829 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312523 16312543 mRNA hsa-miR-216a OXNAD1 miRanda miRanda
2830 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312539 16312558 mRNA hsa-miR-106b OXNAD1 miRanda miRanda
2831 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312532 16312557 mRNA hsa-miR-302a OXNAD1 miRanda miRanda
2832 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312532 16312557 mRNA hsa-miR-302b OXNAD1 miRanda miRanda
2833 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312532 16312557 mRNA hsa-miR-302c OXNAD1 miRanda miRanda
2834 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312532 16312557 mRNA hsa-miR-302d OXNAD1 miRanda miRanda
2835 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312532 16312557 mRNA hsa-miR-372 OXNAD1 miRanda miRanda
2836 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312530 16312557 mRNA hsa-miR-373 OXNAD1 miRanda miRanda
2837 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312537 16312558 mRNA hsa-miR-20b OXNAD1 miRanda miRanda
2838 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312537 16312557 mRNA hsa-miR-520e OXNAD1 miRanda miRanda
2839 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312536 16312557 mRNA hsa-miR-520a-3p OXNAD1 miRanda miRanda
2840 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312537 16312557 mRNA hsa-miR-520b OXNAD1 miRanda miRanda
2841 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312536 16312557 mRNA hsa-miR-520c-3p OXNAD1 miRanda miRanda
2842 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312537 16312558 mRNA hsa-miR-519d OXNAD1 miRanda miRanda
2843 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312530 16312557 mRNA hsa-miR-520d-3p OXNAD1 miRanda miRanda
2844 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 16312541 16312557 mRNA hsa-miR-302e OXNAD1 miRanda miRanda
2845 chr6 142519584 142519584 1 + G A LUAD 142519603 + 142519583 142519623 41 AGAAAATGAAGATGCTGGAGCAGCCTCTCTGCCCACTCAGC AAAAAATGAAGATGCTGGAGCAGCCTCTCTGCCCACTCAGC < 41bp 1 0.28695660662256 1 0.234887003898621 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VTA1 ENSG00000009844 CDS Human protein_coding chr6:142519603 chr6:142519584 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_26808 0 0 1 1 142519581 142519601 mRNA hsa-miR-338-3p VTA1 miRanda miRanda
2846 chr19 11422865 11422865 1 + G A LUAD 11422851 + 11422831 11422871 41 TCCTAAAAATCACCAAGACTCAGAGCTTCACCCTGAGTGGG TCCTAAAAATCACCAAGACTCAGAGCTTCACCCTAAGTGGG < 41bp 1 0.657377965958786 1 0.60783314704895 experiment 0.685244068082427 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TSPAN16 ENSG00000130167 CDS Human protein_coding chr19:11422851 chr19:11422865 synonymous SNV . 0 35 hm5C_associated_SNPs_26811 0 0 0 1 11422844 11422866 mRNA hsa-miR-125a-3p TSPAN16 miRanda miRanda
2847 chrX 73046729 73046729 1 - C A LUAD 73046709 - 73046689 73046729 41 GGACAGGACACATGGAAGGCCTAAGAACTGAGACTTGTGAC TGACAGGACACATGGAAGGCCTAAGAACTGAGACTTGTGAC < 41bp 1 0.253236010065341 1 0.207433670759201 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046709 chrX:73046729 . . 0 1 hm5C_associated_SNPs_26884 0 0 1 1 73046707 73046729 lncRNA hsa-miR-3142 XIST miRanda starBase2
2848 chrX 73046729 73046729 1 - C A LUAD 73046721 - 73046701 73046741 41 TCTTAAGACCTGGGACAGGACACATGGAAGGCCTAAGAACT TCTTAAGACCTGTGACAGGACACATGGAAGGCCTAAGAACT < 41bp 1 0.187865674847579 1 0.145899832248688 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046721 chrX:73046729 . . 0 13 hm5C_associated_SNPs_26885 0 0 1 1 73046707 73046729 lncRNA hsa-miR-3142 XIST miRanda starBase2
2849 chrX 73046729 73046729 1 - C A LUAD 73046726 - 73046706 73046746 41 AGAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA AGAAGTCTTAAGACCTGTGACAGGACACATGGAAGGCCTAA < 41bp 1 0.669278914625833 1 0.755340218544006 experiment 0.661442170748334 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046726 chrX:73046729 . . 0 18 hm5C_associated_SNPs_26886 0 0 1 1 73046707 73046729 lncRNA hsa-miR-3142 XIST miRanda starBase2
2850 chr9 78506251 78506251 1 + C T LUAD 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACTGTAT < 41bp 1 0.0429673173278457 1 0.033968061208725 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506251 nonsynonymous SNV 0.949 2 37 hm5C_associated_SNPs_26902 0 0 0 1 78506249 78506269 mRNA hsa-miR-431 PCSK5 miRanda miRanda
2851 chr15 25213180 25213180 1 + G T LUAD 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGAGACACCAAGAGGTGTTTAAAGCCATA < 41bp 1 0.779553295776114 1 0.453191459178925 experiment 0.440893408447772 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213180 nonsynonymous SNV 0.998 2 30 hm5C_associated_SNPs_26948 0 0 1 2 25213167 25213191 mRNA hsa-miR-135a SNRPN miRanda miRanda
2852 chr15 25213180 25213180 1 + G T LUAD 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGAGACACCAAGAGGTGTTTAAAGCCATA < 41bp 1 0.779553295776114 1 0.453191459178925 experiment 0.440893408447772 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213180 nonsynonymous SNV 0.998 2 30 hm5C_associated_SNPs_26948 0 0 1 2 25213167 25213191 mRNA hsa-miR-135b SNRPN miRanda miRanda
2853 chr17 55191939 55191939 1 + G T LUAD 55191920 + 55191900 55191940 41 CACACACCCTACCTTCCACGCGCTGCGCAGCCTCGACCAGC CACACACCCTACCTTCCACGCGCTGCGCAGCCTCGACCATC < 41bp 1 0.285503267541843 1 0.0974894464015961 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55191920 chr17:55191939 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_26951 0 0 1 1 55191938 55191958 mRNA hsa-miR-194 AKAP1 miRanda miRanda
2854 chr11 61725728 61725728 1 + C A LUAD 61725725 + 61725705 61725745 41 GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGTT GAGCTGGACCTCGTTGTGCCCGTATTCACGTTCCTGCAGTT < 41bp 1 0.185529781932694 1 0.270092189311981 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61725725 chr11:61725728 synonymous SNV . 0 24 hm5C_associated_SNPs_27032 0 0 0 1 61725722 61725741 mRNA hsa-miR-873 BEST1 miRanda miRanda
2855 chr3 20019840 20019840 1 + C T LUAD 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAGTCCTATGCAGATGACAATAGTTTATTATTTATGGA < 41bp 1 0.417062767012704 1 0.0817316472530365 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019840 synonymous SNV . 0 36 hm5C_associated_SNPs_27041 0 0 1 1 20019825 20019847 mRNA hsa-miR-136 RAB5A miRanda miRanda
2856 chr22 21272460 21272460 1 + C G LUAD 21272448 + 21272428 21272468 41 GCCGTTTTAAGATCGGGGACCAGGAATTTGACCATTTGCCG GCCGTTTTAAGATCGGGGACCAGGAATTTGACGATTTGCCG < 41bp 1 0.78761043553311 1 0.768723964691162 experiment 0.42477912893378 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CRKL ENSG00000099942 CDS Human protein_coding chr22:21272448 chr22:21272460 nonsynonymous SNV 0.990 1 33 hm5C_associated_SNPs_27108 0 0 1 1 21272458 21272478 mRNA hsa-miR-214 CRKL miRanda miRanda
2857 chrX 73046905 73046905 1 - C A LUAD 73046893 - 73046873 73046913 41 GATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAGC GATGGTTTTAGACTTGAGACCCGAGGACTAAGATGGAAAGC < 41bp 1 0.161872453546256 1 0.290425658226013 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046893 chrX:73046905 . . 0 9 hm5C_associated_SNPs_27119 0 0 1 3 73046902 73046921 lncRNA hsa-miR-371a-5p XIST miRanda starBase2
2858 chrX 73046905 73046905 1 - C A LUAD 73046893 - 73046873 73046913 41 GATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAGC GATGGTTTTAGACTTGAGACCCGAGGACTAAGATGGAAAGC < 41bp 1 0.161872453546256 1 0.290425658226013 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046893 chrX:73046905 . . 0 9 hm5C_associated_SNPs_27119 0 0 1 3 73046894 73046920 lncRNA hsa-miR-513c-5p XIST miRanda starBase2
2859 chrX 73046905 73046905 1 - C A LUAD 73046893 - 73046873 73046913 41 GATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAGC GATGGTTTTAGACTTGAGACCCGAGGACTAAGATGGAAAGC < 41bp 1 0.161872453546256 1 0.290425658226013 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046893 chrX:73046905 . . 0 9 hm5C_associated_SNPs_27119 0 0 1 3 73046894 73046915 lncRNA hsa-miR-514b-5p XIST miRanda starBase2
2860 chrX 73046905 73046905 1 - C A LUAD 73046894 - 73046874 73046914 41 AGATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAG AGATGGTTTTAGACTTGAGACCCGAGGACTAAGATGGAAAG < 41bp 1 0.409409242359587 1 0.152937978506088 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046894 chrX:73046905 . . 0 10 hm5C_associated_SNPs_27120 0 0 1 3 73046902 73046921 lncRNA hsa-miR-371a-5p XIST miRanda starBase2
2861 chrX 73046905 73046905 1 - C A LUAD 73046894 - 73046874 73046914 41 AGATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAG AGATGGTTTTAGACTTGAGACCCGAGGACTAAGATGGAAAG < 41bp 1 0.409409242359587 1 0.152937978506088 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046894 chrX:73046905 . . 0 10 hm5C_associated_SNPs_27120 0 0 1 3 73046894 73046920 lncRNA hsa-miR-513c-5p XIST miRanda starBase2
2862 chrX 73046905 73046905 1 - C A LUAD 73046894 - 73046874 73046914 41 AGATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAG AGATGGTTTTAGACTTGAGACCCGAGGACTAAGATGGAAAG < 41bp 1 0.409409242359587 1 0.152937978506088 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046894 chrX:73046905 . . 0 10 hm5C_associated_SNPs_27120 0 0 1 3 73046894 73046915 lncRNA hsa-miR-514b-5p XIST miRanda starBase2
2863 chrX 73046905 73046905 1 - C A LUAD 73046915 - 73046895 73046935 41 AGAAGGCCCAAAGTATAAGACAGATGGTTTGAGACTTGAGA AGAAGGCCCAAAGTATAAGACAGATGGTTTTAGACTTGAGA < 41bp 1 0.146666130361763 1 0.252923727035522 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046915 chrX:73046905 . . 0 31 hm5C_associated_SNPs_27121 0 0 1 3 73046902 73046921 lncRNA hsa-miR-371a-5p XIST miRanda starBase2
2864 chrX 73046905 73046905 1 - C A LUAD 73046915 - 73046895 73046935 41 AGAAGGCCCAAAGTATAAGACAGATGGTTTGAGACTTGAGA AGAAGGCCCAAAGTATAAGACAGATGGTTTTAGACTTGAGA < 41bp 1 0.146666130361763 1 0.252923727035522 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046915 chrX:73046905 . . 0 31 hm5C_associated_SNPs_27121 0 0 1 3 73046894 73046920 lncRNA hsa-miR-513c-5p XIST miRanda starBase2
2865 chrX 73046905 73046905 1 - C A LUAD 73046915 - 73046895 73046935 41 AGAAGGCCCAAAGTATAAGACAGATGGTTTGAGACTTGAGA AGAAGGCCCAAAGTATAAGACAGATGGTTTTAGACTTGAGA < 41bp 1 0.146666130361763 1 0.252923727035522 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046915 chrX:73046905 . . 0 31 hm5C_associated_SNPs_27121 0 0 1 3 73046894 73046915 lncRNA hsa-miR-514b-5p XIST miRanda starBase2
2866 chr14 75360058 75360058 1 + A T LUAD 75360054 + 75360034 75360074 41 CCTCTTTTCATTTTCAGTGTCTGCAGTAAAACCCACTGTTG CCTCTTTTCATTTTCAGTGTCTGCTGTAAAACCCACTGTTG < 41bp 1 0.588688467477529 1 0.0855450928211212 experiment 0.822623065044942 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DLST ENSG00000119689 CDS Human protein_coding chr14:75360054 chr14:75360058 synonymous SNV . 0 25 hm5C_associated_SNPs_27165 0 0 1 1 75360051 75360071 mRNA hsa-miR-140-5p DLST miRanda miRanda
2867 chr19 21300980 21300980 1 + G T LUAD 21300990 + 21300970 21301010 41 AATTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACA AATTCAGCAGTGCATGGTGGCTCATGCCTGTAATCCCAACA < 41bp 1 0.348901093266912 1 0.107734739780426 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300990 chr19:21300980 nonsynonymous SNV 0.006 2 11 hm5C_associated_SNPs_27169 0 0 1 1 21300960 21300981 mRNA hsa-miR-370 ZNF714 miRanda miRanda
2868 chr19 21300980 21300980 1 + G T LUAD 21300992 + 21300972 21301012 41 TTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACT TTCAGCAGTGCATGGTGGCTCATGCCTGTAATCCCAACACT < 41bp 1 0.221796486442202 1 0.120239436626434 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300992 chr19:21300980 nonsynonymous SNV 0.006 2 9 hm5C_associated_SNPs_27170 0 0 1 1 21300960 21300981 mRNA hsa-miR-370 ZNF714 miRanda miRanda
2869 chr19 21300980 21300980 1 + G T LUAD 21300996 + 21300976 21301016 41 GCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACTTTGA GCAGTGCATGGTGGCTCATGCCTGTAATCCCAACACTTTGA < 41bp 1 0.146201312974274 1 0.0919382274150848 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300996 chr19:21300980 nonsynonymous SNV 0.006 2 5 hm5C_associated_SNPs_27171 0 0 1 1 21300960 21300981 mRNA hsa-miR-370 ZNF714 miRanda miRanda
2870 chr19 21300980 21300980 1 + G T LUAD 21300997 + 21300977 21301017 41 CAGGGCATGGTGGCTCATGCCTGTAATCCCAACACTTTGAG CAGTGCATGGTGGCTCATGCCTGTAATCCCAACACTTTGAG < 41bp 1 0.597344320411712 1 0.080018937587738 experiment 0.805311359176575 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300997 chr19:21300980 nonsynonymous SNV 0.006 2 4 hm5C_associated_SNPs_27172 0 0 1 1 21300960 21300981 mRNA hsa-miR-370 ZNF714 miRanda miRanda
2871 chr12 98941397 98941397 1 + G A LUAD 98941402 + 98941382 98941422 41 GCAGGCCGGCCATTAGAACTCAGTGATTTCAGGATGGAGGA GCAGGCCGGCCATTAAAACTCAGTGATTTCAGGATGGAGGA < 41bp 1 0.720580266485308 1 0.265827268362045 experiment 0.558839467029384 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMPO ENSG00000120802 CDS Human protein_coding chr12:98941402 chr12:98941397 nonsynonymous SNV 0.992 0 16 hm5C_associated_SNPs_27196 0 0 1 1 98941388 98941410 mRNA hsa-miR-200b TMPO miRanda miRanda
2872 chr5 68425393 68425393 1 + A C LUAD 68425373 + 68425353 68425393 41 CTGGCCTAAGTACTGGATTTCATGATGTTCTGGCTATGACA CTGGCCTAAGTACTGGATTTCATGATGTTCTGGCTATGACC < 41bp 1 0.569059574846112 1 0.347192645072937 experiment 0.861880850307776 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68425373 chr5:68425393 synonymous SNV . 0 41 hm5C_associated_SNPs_27202 0 0 1 1 68425370 68425394 mRNA hsa-miR-153 SLC30A5 miRanda miRanda
2873 chr21 33887132 33887132 1 + G C LUAD 33887128 + 33887108 33887148 41 TCTCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCT TCTCTTCCTCCTGCAGCCCACCCGCAGAGAGCTGCCCTGCT < 41bp 1 0.195046066661131 1 0.543396532535553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887128 chr21:33887132 nonsynonymous SNV 0.962 4 25 hm5C_associated_SNPs_27217 0 0 0 1 33887130 33887150 mRNA hsa-miR-214 C21orf63 miRanda miRanda
2874 chr21 33887132 33887132 1 + G C LUAD 33887129 + 33887109 33887149 41 CTCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCTG CTCTTCCTCCTGCAGCCCACCCGCAGAGAGCTGCCCTGCTG < 41bp 1 0.638728606085068 1 0.280873209238052 experiment 0.722542787829863 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887129 chr21:33887132 nonsynonymous SNV 0.962 4 24 hm5C_associated_SNPs_27218 0 0 0 1 33887130 33887150 mRNA hsa-miR-214 C21orf63 miRanda miRanda
2875 chr21 33887132 33887132 1 + G C LUAD 33887130 + 33887110 33887150 41 TCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCTGT TCTTCCTCCTGCAGCCCACCCGCAGAGAGCTGCCCTGCTGT < 41bp 1 0.642721813522434 1 0.532823145389557 experiment 0.714556372955132 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887130 chr21:33887132 nonsynonymous SNV 0.962 4 23 hm5C_associated_SNPs_27219 0 0 0 1 33887130 33887150 mRNA hsa-miR-214 C21orf63 miRanda miRanda
2876 chr16 1889352 1889352 1 + G A LUAD 1889342 + 1889322 1889362 41 ATCAGTCAGATCAATCAGCACATGGAAACTGAGAAAGACAG ATCAGTCAGATCAATCAGCACATGGAAACTAAGAAAGACAG < 41bp 1 0.567446183888547 1 0.243174910545349 experiment 0.865107632222906 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MEIOB ENSG00000162039 CDS Human protein_coding chr16:1889342 chr16:1889352 synonymous SNV . 0 31 hm5C_associated_SNPs_27222 0 0 0 1 1889335 1889355 mRNA hsa-miR-223 FAHD1 miRanda miRanda
2877 chr3 39110337 39110337 1 + G T LUAD 39110322 + 39110302 39110342 41 GGCCATGAATCAACTGGGAACAATCATTGTATCAGGGTCCA GGCCATGAATCAACTGGGAACAATCATTGTATCAGTGTCCA < 41bp 1 0.0835190685286054 1 0.264894366264343 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39110322 chr3:39110337 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_27232 0 0 0 1 39110320 39110341 mRNA hsa-miR-504 WDR48 miRanda miRanda
2878 chr3 39110337 39110337 1 + G T LUAD 39110326 + 39110306 39110346 41 ATGAATCAACTGGGAACAATCATTGTATCAGGGTCCACTGA ATGAATCAACTGGGAACAATCATTGTATCAGTGTCCACTGA < 41bp 1 0.325672653627291 1 0.245504081249237 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39110326 chr3:39110337 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_27233 0 0 0 1 39110320 39110341 mRNA hsa-miR-504 WDR48 miRanda miRanda
2879 chr2 71297697 71297697 1 + G A LUAD 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGATGAACTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.55248064341579 1 0.422680795192719 experiment 0.895038713168421 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297697 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_27311 0 0 1 2 71297694 71297715 mRNA hsa-miR-140-5p NAGK miRanda miRanda
2880 chr2 71297697 71297697 1 + G A LUAD 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGATGAACTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.55248064341579 1 0.422680795192719 experiment 0.895038713168421 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297697 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_27311 0 0 1 2 71297689 71297709 mRNA hsa-miR-599 NAGK miRanda miRanda
2881 chr20 44522627 44522627 1 + G A LUAD 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGACTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.135321969716783 1 0.930726706981659 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522627 synonymous SNV . 0 5 hm5C_associated_SNPs_27314 0 0 1 1 44522627 44522644 mRNA hsa-miR-185 CTSA miRanda miRanda
2882 chr11 43908159 43908159 1 + A G LUAD 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGGGAGGGTGTGTATGAAAT < 41bp 1 0.694529853453876 1 0.669933140277863 experiment 0.610940293092249 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908159 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_27333 0 0 1 4 43908156 43908170 mRNA hsa-miR-362-3p ALKBH3 miRanda miRanda
2883 chr11 43908159 43908159 1 + A G LUAD 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGGGAGGGTGTGTATGAAAT < 41bp 1 0.694529853453876 1 0.669933140277863 experiment 0.610940293092249 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908159 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_27333 0 0 1 4 43908159 43908170 mRNA hsa-miR-362-3p ALKBH3 miRanda miRanda
2884 chr11 43908159 43908159 1 + A G LUAD 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGGGAGGGTGTGTATGAAAT < 41bp 1 0.694529853453876 1 0.669933140277863 experiment 0.610940293092249 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908159 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_27333 0 0 1 4 43908156 43908170 mRNA hsa-miR-329 ALKBH3 miRanda miRanda
2885 chr11 43908159 43908159 1 + A G LUAD 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGGGAGGGTGTGTATGAAAT < 41bp 1 0.694529853453876 1 0.669933140277863 experiment 0.610940293092249 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908159 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_27333 0 0 1 4 43908159 43908170 mRNA hsa-miR-329 ALKBH3 miRanda miRanda
2886 chrX 73046055 73046055 1 - C A LUAD 73046036 - 73046016 73046056 41 TGTGAAGAGATGCTCCAGGCCAATGAGAAGAATTAGACAAG TTTGAAGAGATGCTCCAGGCCAATGAGAAGAATTAGACAAG < 41bp 1 0.107476451891578 1 0.181662529706955 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046036 chrX:73046055 . . 0 2 hm5C_associated_SNPs_27336 0 0 1 4 73046051 73046071 lncRNA hsa-miR-130a-5p XIST miRanda starBase2
2887 chrX 73046055 73046055 1 - C A LUAD 73046036 - 73046016 73046056 41 TGTGAAGAGATGCTCCAGGCCAATGAGAAGAATTAGACAAG TTTGAAGAGATGCTCCAGGCCAATGAGAAGAATTAGACAAG < 41bp 1 0.107476451891578 1 0.181662529706955 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046036 chrX:73046055 . . 0 2 hm5C_associated_SNPs_27336 0 0 1 4 73046051 73046071 lncRNA hsa-miR-23a-3p XIST miRanda starBase2
2888 chrX 73046055 73046055 1 - C A LUAD 73046036 - 73046016 73046056 41 TGTGAAGAGATGCTCCAGGCCAATGAGAAGAATTAGACAAG TTTGAAGAGATGCTCCAGGCCAATGAGAAGAATTAGACAAG < 41bp 1 0.107476451891578 1 0.181662529706955 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046036 chrX:73046055 . . 0 2 hm5C_associated_SNPs_27336 0 0 1 4 73046051 73046071 lncRNA hsa-miR-23b-3p XIST miRanda starBase2
2889 chrX 73046055 73046055 1 - C A LUAD 73046036 - 73046016 73046056 41 TGTGAAGAGATGCTCCAGGCCAATGAGAAGAATTAGACAAG TTTGAAGAGATGCTCCAGGCCAATGAGAAGAATTAGACAAG < 41bp 1 0.107476451891578 1 0.181662529706955 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046036 chrX:73046055 . . 0 2 hm5C_associated_SNPs_27336 0 0 1 4 73046051 73046072 lncRNA hsa-miR-23c XIST miRanda starBase2
2890 chrX 73046055 73046055 1 - C A LUAD 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATTTGAAGA < 41bp 1 0.270808023535847 1 0.880592823028564 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046055 . . 0 35 hm5C_associated_SNPs_27337 0 0 1 4 73046051 73046071 lncRNA hsa-miR-130a-5p XIST miRanda starBase2
2891 chrX 73046055 73046055 1 - C A LUAD 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATTTGAAGA < 41bp 1 0.270808023535847 1 0.880592823028564 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046055 . . 0 35 hm5C_associated_SNPs_27337 0 0 1 4 73046051 73046071 lncRNA hsa-miR-23a-3p XIST miRanda starBase2
2892 chrX 73046055 73046055 1 - C A LUAD 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATTTGAAGA < 41bp 1 0.270808023535847 1 0.880592823028564 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046055 . . 0 35 hm5C_associated_SNPs_27337 0 0 1 4 73046051 73046071 lncRNA hsa-miR-23b-3p XIST miRanda starBase2
2893 chrX 73046055 73046055 1 - C A LUAD 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATTTGAAGA < 41bp 1 0.270808023535847 1 0.880592823028564 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046055 . . 0 35 hm5C_associated_SNPs_27337 0 0 1 4 73046051 73046072 lncRNA hsa-miR-23c XIST miRanda starBase2
2894 chrX 73046055 73046055 1 - C A LUAD 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATT < 41bp 1 0.222305013256787 1 0.335459113121033 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046055 . . 0 41 hm5C_associated_SNPs_27338 0 0 1 4 73046051 73046071 lncRNA hsa-miR-130a-5p XIST miRanda starBase2
2895 chrX 73046055 73046055 1 - C A LUAD 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATT < 41bp 1 0.222305013256787 1 0.335459113121033 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046055 . . 0 41 hm5C_associated_SNPs_27338 0 0 1 4 73046051 73046071 lncRNA hsa-miR-23a-3p XIST miRanda starBase2
2896 chrX 73046055 73046055 1 - C A LUAD 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATT < 41bp 1 0.222305013256787 1 0.335459113121033 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046055 . . 0 41 hm5C_associated_SNPs_27338 0 0 1 4 73046051 73046071 lncRNA hsa-miR-23b-3p XIST miRanda starBase2
2897 chrX 73046055 73046055 1 - C A LUAD 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATT < 41bp 1 0.222305013256787 1 0.335459113121033 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046055 . . 0 41 hm5C_associated_SNPs_27338 0 0 1 4 73046051 73046072 lncRNA hsa-miR-23c XIST miRanda starBase2
2898 chr20 47895497 47895497 1 + C T LUAD 47895499 + 47895479 47895519 41 TGGTGTAAATGATGACTTCACTTTTTTCCCCATCAGATCGA TGGTGTAAATGATGACTTTACTTTTTTCCCCATCAGATCGA < 41bp 1 0.107032178726588 1 0.0471195578575134 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895499 chr20:47895497 . . 0 19 hm5C_associated_SNPs_27369 0 0 1 1 47895482 47895497 mRNA hsa-miR-224 SNORD12C miRanda miRanda
2899 chr20 47895497 47895497 1 + C T LUAD 47895509 + 47895489 47895529 41 GATGACTTCACTTTTTTCCCCATCAGATCGACAATGCTGAC GATGACTTTACTTTTTTCCCCATCAGATCGACAATGCTGAC < 41bp 1 0.304282354602495 1 0.0718928575515747 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895509 chr20:47895497 . . 0 9 hm5C_associated_SNPs_27370 0 0 1 1 47895482 47895497 mRNA hsa-miR-224 SNORD12C miRanda miRanda
2900 chrX 53114910 53114910 1 + A T LUAD 53114930 + 53114910 53114950 41 ACAATTCATGACATCAAGATCTCTGACTTCATGGAGACCAC TCAATTCATGACATCAAGATCTCTGACTTCATGGAGACCAC < 41bp 1 0.406762122655051 1 0.244189888238907 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53114930 chrX:53114910 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_27398 0 0 1 1 53114899 53114921 mRNA hsa-miR-433 TSPYL2 miRanda miRanda
2901 chr5 74865234 74865234 1 + G A LUAD 74865247 + 74865227 74865267 41 TGACATGGATGCTTTCTATGCAGCTGTAGAAATGAGGGACA TGACATGAATGCTTTCTATGCAGCTGTAGAAATGAGGGACA < 41bp 1 0.701443480837826 1 0.198588460683823 experiment 0.597113038324348 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLK ENSG00000122008 CDS Human protein_coding chr5:74865247 chr5:74865234 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_27425 0 0 0 1 74865227 74865249 mRNA hsa-miR-153 POLK miRanda miRanda
2902 chr11 66050518 66050518 1 + G A LUAD 66050523 + 66050503 66050543 41 CAGCTGGTGGTCCCAGAATACTCCATCCACGGCCTCTTCTG CAGCTGGTGGTCCCAAAATACTCCATCCACGGCCTCTTCTG < 41bp 1 0.760119041360192 1 0.942692399024963 experiment 0.479761917279616 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CNIH2 ENSG00000174871 CDS Human protein_coding chr11:66050523 chr11:66050518 nonsynonymous SNV 0.994 3 16 hm5C_associated_SNPs_27493 0 0 0 1 66050506 66050526 mRNA hsa-miR-496 CNIH2 miRanda miRanda
2903 chr11 43908168 43908168 1 + G T LUAD 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTTTATGAAAT < 41bp 1 0.467760412387878 1 0.452737003564835 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908168 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_27610 0 0 1 4 43908156 43908170 mRNA hsa-miR-362-3p ALKBH3 miRanda miRanda
2904 chr11 43908168 43908168 1 + G T LUAD 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTTTATGAAAT < 41bp 1 0.467760412387878 1 0.452737003564835 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908168 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_27610 0 0 1 4 43908159 43908170 mRNA hsa-miR-362-3p ALKBH3 miRanda miRanda
2905 chr11 43908168 43908168 1 + G T LUAD 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTTTATGAAAT < 41bp 1 0.467760412387878 1 0.452737003564835 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908168 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_27610 0 0 1 4 43908156 43908170 mRNA hsa-miR-329 ALKBH3 miRanda miRanda
2906 chr11 43908168 43908168 1 + G T LUAD 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTTTATGAAAT < 41bp 1 0.467760412387878 1 0.452737003564835 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908168 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_27610 0 0 1 4 43908159 43908170 mRNA hsa-miR-329 ALKBH3 miRanda miRanda
2907 chr11 65268419 65268419 1 + C T LUAD 65268439 + 65268419 65268459 41 CTGAAGCTTTTGAGGGCAGACTGCCAAGTCCTGGAGAAATA TTGAAGCTTTTGAGGGCAGACTGCCAAGTCCTGGAGAAATA < 41bp 1 0.255701368659718 1 0.0839554369449615 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268439 chr11:65268419 . . 0 1 hm5C_associated_SNPs_27679 0 0 1 1 65268418 65268440 lncRNA hsa-miR-346 MALAT1 miRanda starBase2
2908 chr22 19707369 19707369 1 + C T LUAD 19707377 + 19707357 19707397 41 GGTCCACAGCCTCTTCCTGACAGACTTGTACAAGGACCGGA GGTCCACAGCCTTTTCCTGACAGACTTGTACAAGGACCGGA < 41bp 1 0.252677872821887 1 0.125095129013062 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19707377 chr22:19707369 synonymous SNV . 0 13 hm5C_associated_SNPs_27684 0 0 0 1 19707345 19707370 mRNA hsa-miR-485-5p SEPT5 miRanda miRanda
2909 chr8 107754476 107754476 1 + A G LUAD 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTGGTGCGTTAGCATCTGAGCCGCTGAAAGTGAGTGATGGC < 41bp 1 0.102801793995433 1 0.0718809366226196 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754476 synonymous SNV . 0 23 hm5C_associated_SNPs_27773 0 0 0 1 107754455 107754476 mRNA hsa-miR-24 OXR1 miRanda miRanda
2910 chr8 107754476 107754476 1 + A G LUAD 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TGGTGCGTTAGCATCTGAGCCGCTGAAAGTGAGTGATGGCT < 41bp 1 0.186195380529942 1 0.148971855640411 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754476 synonymous SNV . 0 22 hm5C_associated_SNPs_27774 0 0 0 1 107754455 107754476 mRNA hsa-miR-24 OXR1 miRanda miRanda
2911 chrX 73046540 73046540 1 - G T LUAD 73046526 - 73046506 73046546 41 TGGAGGCCCATGACCCAGAACCCAGGAAGGATAGAAGCTTG TGGAGGACCATGACCCAGAACCCAGGAAGGATAGAAGCTTG < 41bp 1 0.234893175634283 1 0.242254137992859 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046526 chrX:73046540 . . 0 7 hm5C_associated_SNPs_27785 0 0 1 1 73046519 73046540 lncRNA hsa-miR-1343-3p XIST miRanda starBase2
2912 chrX 73046540 73046540 1 - G T LUAD 73046532 - 73046512 73046552 41 GGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAGA GGAATCTGGAGGACCATGACCCAGAACCCAGGAAGGATAGA < 41bp 1 0.270798992888634 1 0.367590129375458 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046532 chrX:73046540 . . 0 13 hm5C_associated_SNPs_27786 0 0 1 1 73046519 73046540 lncRNA hsa-miR-1343-3p XIST miRanda starBase2
2913 chrX 73046540 73046540 1 - G T LUAD 73046533 - 73046513 73046553 41 CGGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAG CGGAATCTGGAGGACCATGACCCAGAACCCAGGAAGGATAG < 41bp 1 0.244199296320732 1 0.128465712070465 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046533 chrX:73046540 . . 0 14 hm5C_associated_SNPs_27787 0 0 1 1 73046519 73046540 lncRNA hsa-miR-1343-3p XIST miRanda starBase2
2914 chrX 73046540 73046540 1 - G T LUAD 73046539 - 73046519 73046559 41 AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA AACGGCCGGAATCTGGAGGACCATGACCCAGAACCCAGGAA < 41bp 1 0.0759596776059298 1 0.0964268147945404 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046539 chrX:73046540 . . 0 20 hm5C_associated_SNPs_27788 0 0 1 1 73046519 73046540 lncRNA hsa-miR-1343-3p XIST miRanda starBase2
2915 chr15 25222171 25222171 1 + C A LUAD 25222166 + 25222146 25222186 41 TGTCCGAGGAGTTGGGGGACCATCCCAGCAGGTGAGGAACC TGTCCGAGGAGTTGGGGGACCATCCAAGCAGGTGAGGAACC < 41bp 1 0.154255414447056 1 0.302614748477936 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25222166 chr15:25222171 nonsynonymous SNV 0.987 2 26 hm5C_associated_SNPs_27790 0 0 1 2 25222157 25222176 mRNA hsa-miR-370 SNURF miRanda miRanda
2916 chr15 25222171 25222171 1 + C A LUAD 25222166 + 25222146 25222186 41 TGTCCGAGGAGTTGGGGGACCATCCCAGCAGGTGAGGAACC TGTCCGAGGAGTTGGGGGACCATCCAAGCAGGTGAGGAACC < 41bp 1 0.154255414447056 1 0.302614748477936 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25222166 chr15:25222171 nonsynonymous SNV 0.987 2 26 hm5C_associated_SNPs_27790 0 0 1 2 25222165 25222176 mRNA hsa-miR-496 SNURF miRanda miRanda
2917 chr4 52740465 52740465 1 + C G LUAD 52740449 + 52740429 52740469 41 TTTTGTAGGAAGTCTGCGGTCTTGCAGTTCTTCAGACTGCT TTTTGTAGGAAGTCTGCGGTCTTGCAGTTCTTCAGAGTGCT < 41bp 1 0.233779261945487 1 0.0648183226585388 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DCUN1D4 ENSG00000109184 CDS Human protein_coding chr4:52740449 chr4:52740465 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_27811 0 0 1 1 52740450 52740476 mRNA hsa-miR-340 DCUN1D4 miRanda miRanda
2918 chr19 50027842 50027842 1 + A G LUAD 50027862 + 50027842 50027882 41 ACCCTCCGGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTG GCCCTCCGGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTG < 41bp 1 0.525964403078459 1 0.707493603229523 experiment 0.948071193843083 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCGRT ENSG00000104870 CDS Human protein_coding chr19:50027862 chr19:50027842 nonsynonymous SNV 0.994 3 1 hm5C_associated_SNPs_27864 0 0 1 1 50027826 50027848 mRNA hsa-let-7e FCGRT miRanda miRanda
2919 chr6 7594075 7594075 1 + G T LUAD 7594067 + 7594047 7594087 41 ATTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCAT ATTGAGGAAAATGGGCTATACCAAAGAATAAGAGGTACCAT < 41bp 1 0.446514911653862 1 0.225918382406235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594067 chr6:7594075 stopgain 1.000 1 29 hm5C_associated_SNPs_27897 0 0 1 1 7594068 7594080 mRNA hsa-miR-181d SNRNP48 miRanda miRanda
2920 chr6 7594075 7594075 1 + G T LUAD 7594068 + 7594048 7594088 41 TTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCATA TTGAGGAAAATGGGCTATACCAAAGAATAAGAGGTACCATA < 41bp 1 0.603577405377783 1 0.478912651538849 experiment 0.792845189244435 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594068 chr6:7594075 stopgain 1.000 1 28 hm5C_associated_SNPs_27898 0 0 1 1 7594068 7594080 mRNA hsa-miR-181d SNRNP48 miRanda miRanda
2921 chr7 23221741 23221741 1 + C T LUAD 23221740 + 23221720 23221760 41 TTCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTG TTCTTCCTTCAAGGCCGGTGCTGCTTTGGAGATCGGTGCTG < 41bp 1 0.62584007368036 1 0.388384103775024 experiment 0.74831985263928 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221740 chr7:23221741 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_27929 0 0 1 3 23221737 23221760 mRNA hsa-miR-29a NUPL2 miRanda miRanda
2922 chr7 23221741 23221741 1 + C T LUAD 23221740 + 23221720 23221760 41 TTCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTG TTCTTCCTTCAAGGCCGGTGCTGCTTTGGAGATCGGTGCTG < 41bp 1 0.62584007368036 1 0.388384103775024 experiment 0.74831985263928 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221740 chr7:23221741 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_27929 0 0 1 3 23221736 23221760 mRNA hsa-miR-29b NUPL2 miRanda miRanda
2923 chr7 23221741 23221741 1 + C T LUAD 23221740 + 23221720 23221760 41 TTCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTG TTCTTCCTTCAAGGCCGGTGCTGCTTTGGAGATCGGTGCTG < 41bp 1 0.62584007368036 1 0.388384103775024 experiment 0.74831985263928 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221740 chr7:23221741 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_27929 0 0 1 3 23221737 23221760 mRNA hsa-miR-29c NUPL2 miRanda miRanda
2924 chr4 79766107 79766107 1 + G T LUAD 79766114 + 79766094 79766134 41 TTGTTGAATGATGGTGGGAACTATGTACTTTGTGACTTTGG TTGTTGAATGATGTTGGGAACTATGTACTTTGTGACTTTGG < 41bp 1 0.11563220066483 1 0.164749205112457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP2K ENSG00000138756 CDS Human protein_coding chr4:79766114 chr4:79766107 nonsynonymous SNV 0.986 0 14 hm5C_associated_SNPs_27990 0 0 1 1 79766107 79766132 mRNA hsa-miR-224 BMP2K miRanda miRanda
2925 chrX 152959710 152959710 1 + C G LUAD 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATCGATCTCTCGATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.371403044367822 1 0.121910601854324 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959710 synonymous SNV . 0 13 hm5C_associated_SNPs_28030 0 0 1 4 152959697 152959720 mRNA hsa-miR-29a SLC6A8 miRanda miRanda
2926 chrX 152959710 152959710 1 + C G LUAD 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATCGATCTCTCGATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.371403044367822 1 0.121910601854324 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959710 synonymous SNV . 0 13 hm5C_associated_SNPs_28030 0 0 1 4 152959696 152959720 mRNA hsa-miR-29b SLC6A8 miRanda miRanda
2927 chrX 152959710 152959710 1 + C G LUAD 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATCGATCTCTCGATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.371403044367822 1 0.121910601854324 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959710 synonymous SNV . 0 13 hm5C_associated_SNPs_28030 0 0 1 4 152959687 152959711 mRNA hsa-miR-185 SLC6A8 miRanda miRanda
2928 chrX 152959710 152959710 1 + C G LUAD 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATCGATCTCTCGATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.371403044367822 1 0.121910601854324 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959710 synonymous SNV . 0 13 hm5C_associated_SNPs_28030 0 0 1 4 152959697 152959720 mRNA hsa-miR-29c SLC6A8 miRanda miRanda
2929 chr11 33358645 33358645 1 + G T LUAD 33358660 + 33358640 33358680 41 CTCAAGGTTTGCCAGGAGAACAGTTGTTAAATGTGGGTACT CTCAATGTTTGCCAGGAGAACAGTTGTTAAATGTGGGTACT < 41bp 1 0.188070749936169 1 0.169177681207657 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33358660 chr11:33358645 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_28039 0 0 1 1 33358642 33358668 mRNA hsa-miR-141 HIPK3 miRanda miRanda
2930 chr1 55075530 55075530 1 + C T LUAD 55075531 + 55075511 55075551 41 CTCCAGCGTCAGGATGTTGCCACTTGGAGTATGAACAATGG CTCCAGCGTCAGGATGTTGTCACTTGGAGTATGAACAATGG < 41bp 1 0.515763554895352 1 0.1272052526474 experiment 0.968472890209297 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control FAM151A ENSG00000162391 CDS Human protein_coding chr1:55075531 chr1:55075530 nonsynonymous SNV 0.005 0 20 hm5C_associated_SNPs_28047 0 0 0 1 55075513 55075535 mRNA hsa-miR-454 ACOT11 miRanda miRanda
2931 chr15 25213175 25213175 1 + A T LUAD 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGAGACACCAAGTGGTGGTTAAAGCCATA < 41bp 1 0.516368809529919 1 0.520489573478699 experiment 0.967262380940161 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213175 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_28092 0 0 0 2 25213167 25213191 mRNA hsa-miR-135a SNRPN miRanda miRanda
2932 chr15 25213175 25213175 1 + A T LUAD 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGAGACACCAAGTGGTGGTTAAAGCCATA < 41bp 1 0.516368809529919 1 0.520489573478699 experiment 0.967262380940161 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213175 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_28092 0 0 0 2 25213167 25213191 mRNA hsa-miR-135b SNRPN miRanda miRanda
2933 chr7 141255319 141255319 1 + G T LUAD 141255330 + 141255310 141255350 41 CTACAGCTGGGCTCTGCCTGCTGACCTGGGGAGGCCATTGG CTACAGCTGTGCTCTGCCTGCTGACCTGGGGAGGCCATTGG < 41bp 1 0.4471746514373 1 0.218439489603043 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141255330 chr7:141255319 nonsynonymous SNV 0.999 2 10 hm5C_associated_SNPs_28122 0 0 1 2 141255312 141255333 mRNA hsa-miR-214 AGK miRanda miRanda
2934 chr7 141255319 141255319 1 + G T LUAD 141255330 + 141255310 141255350 41 CTACAGCTGGGCTCTGCCTGCTGACCTGGGGAGGCCATTGG CTACAGCTGTGCTCTGCCTGCTGACCTGGGGAGGCCATTGG < 41bp 1 0.4471746514373 1 0.218439489603043 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141255330 chr7:141255319 nonsynonymous SNV 0.999 2 10 hm5C_associated_SNPs_28122 0 0 1 2 141255305 141255332 mRNA hsa-miR-497 AGK miRanda miRanda
2935 chr11 12281439 12281439 1 + C T LUAD 12281442 + 12281422 12281462 41 CACCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT CACCCTGGAAGGCAGCCTCCCAGGTATCTCCACCTCCTTCT < 41bp 1 0.72330257708591 1 0.0885542929172516 experiment 0.553394845828181 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281442 chr11:12281439 nonsynonymous SNV 0.995 2 18 hm5C_associated_SNPs_28138 0 0 1 1 12281433 12281444 mRNA hsa-miR-203 MICAL2 miRanda miRanda
2936 chr5 118877683 118877683 1 + G T LUAD 118877694 + 118877674 118877714 41 CTACGCCAAGCTCTGAAGGGCACACTACACTATTAATAAAA CTACGCCAATCTCTGAAGGGCACACTACACTATTAATAAAA < 41bp 1 0.153383024482577 1 0.0866518020629883 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118877694 chr5:118877683 nonsynonymous SNV 0.998 0 10 hm5C_associated_SNPs_28218 0 0 1 1 118877680 118877702 mRNA hsa-miR-142-3p HSD17B4 miRanda miRanda
2937 chr16 58043944 58043944 1 + G T LUAD 58043940 + 58043920 58043960 41 TGTTCCACCTCAGCCTGTCCCAGAGTGTGGTTCTGCGCCAC TGTTCCACCTCAGCCTGTCCCAGATTGTGGTTCTGCGCCAC < 41bp 1 0.695838347074536 1 0.524546980857849 experiment 0.608323305850929 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USB1 ENSG00000103005 CDS Human protein_coding chr16:58043940 chr16:58043944 nonsynonymous SNV 0.986 2 25 hm5C_associated_SNPs_28257 0 0 1 2 58043926 58043945 mRNA hsa-miR-330-5p C16orf57 miRanda miRanda
2938 chr16 58043944 58043944 1 + G T LUAD 58043940 + 58043920 58043960 41 TGTTCCACCTCAGCCTGTCCCAGAGTGTGGTTCTGCGCCAC TGTTCCACCTCAGCCTGTCCCAGATTGTGGTTCTGCGCCAC < 41bp 1 0.695838347074536 1 0.524546980857849 experiment 0.608323305850929 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USB1 ENSG00000103005 CDS Human protein_coding chr16:58043940 chr16:58043944 nonsynonymous SNV 0.986 2 25 hm5C_associated_SNPs_28257 0 0 1 2 58043926 58043945 mRNA hsa-miR-326 C16orf57 miRanda miRanda
2939 chrX 73045838 73045838 1 - C G LUAD 73045845 - 73045825 73045865 41 GACAGCCTGAACTCCCTGCTCATAGTAGTGGCCAAATAATT GACAGCCTGAACTCCCTGCTCATAGTACTGGCCAAATAATT < 41bp 1 0.0963562805023935 1 0.10574334859848 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045845 chrX:73045838 . . 0 28 hm5C_associated_SNPs_28322 0 0 1 3 73045831 73045852 lncRNA hsa-miR-4701-5p XIST miRanda starBase2
2940 chrX 73045838 73045838 1 - C G LUAD 73045845 - 73045825 73045865 41 GACAGCCTGAACTCCCTGCTCATAGTAGTGGCCAAATAATT GACAGCCTGAACTCCCTGCTCATAGTACTGGCCAAATAATT < 41bp 1 0.0963562805023935 1 0.10574334859848 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045845 chrX:73045838 . . 0 28 hm5C_associated_SNPs_28322 0 0 1 3 73045831 73045853 lncRNA hsa-miR-588 XIST miRanda starBase2
2941 chrX 73045838 73045838 1 - C G LUAD 73045845 - 73045825 73045865 41 GACAGCCTGAACTCCCTGCTCATAGTAGTGGCCAAATAATT GACAGCCTGAACTCCCTGCTCATAGTACTGGCCAAATAATT < 41bp 1 0.0963562805023935 1 0.10574334859848 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045845 chrX:73045838 . . 0 28 hm5C_associated_SNPs_28322 0 0 1 3 73045824 73045847 lncRNA hsa-miR-944 XIST miRanda starBase2
2942 chrX 73045838 73045838 1 - C G LUAD 73045854 - 73045834 73045874 41 TCCCAAGGGGACAGCCTGAACTCCCTGCTCATAGTAGTGGC TCCCAAGGGGACAGCCTGAACTCCCTGCTCATAGTACTGGC < 41bp 1 0.318722200075285 1 0.391038596630096 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045854 chrX:73045838 . . 0 37 hm5C_associated_SNPs_28323 0 0 1 3 73045831 73045852 lncRNA hsa-miR-4701-5p XIST miRanda starBase2
2943 chrX 73045838 73045838 1 - C G LUAD 73045854 - 73045834 73045874 41 TCCCAAGGGGACAGCCTGAACTCCCTGCTCATAGTAGTGGC TCCCAAGGGGACAGCCTGAACTCCCTGCTCATAGTACTGGC < 41bp 1 0.318722200075285 1 0.391038596630096 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045854 chrX:73045838 . . 0 37 hm5C_associated_SNPs_28323 0 0 1 3 73045831 73045853 lncRNA hsa-miR-588 XIST miRanda starBase2
2944 chrX 73045838 73045838 1 - C G LUAD 73045854 - 73045834 73045874 41 TCCCAAGGGGACAGCCTGAACTCCCTGCTCATAGTAGTGGC TCCCAAGGGGACAGCCTGAACTCCCTGCTCATAGTACTGGC < 41bp 1 0.318722200075285 1 0.391038596630096 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045854 chrX:73045838 . . 0 37 hm5C_associated_SNPs_28323 0 0 1 3 73045824 73045847 lncRNA hsa-miR-944 XIST miRanda starBase2
2945 chr6 33243778 33243778 1 + C T LUAD 33243758 + 33243738 33243778 41 CCAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCC CCAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCT < 41bp 1 0.144710303801097 1 0.0408784747123718 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243758 chr6:33243778 stopgain 0.998 1 41 hm5C_associated_SNPs_28338 0 0 1 2 33243761 33243782 mRNA hsa-miR-193a-3p RPS18 miRanda miRanda
2946 chr6 33243778 33243778 1 + C T LUAD 33243758 + 33243738 33243778 41 CCAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCC CCAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCT < 41bp 1 0.144710303801097 1 0.0408784747123718 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243758 chr6:33243778 stopgain 0.998 1 41 hm5C_associated_SNPs_28338 0 0 1 2 33243761 33243782 mRNA hsa-miR-193b RPS18 miRanda miRanda
2947 chr6 33243778 33243778 1 + C T LUAD 33243759 + 33243739 33243779 41 CAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCCA CAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCTA < 41bp 1 0.34970026891938 1 0.157465636730194 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243759 chr6:33243778 stopgain 0.998 1 40 hm5C_associated_SNPs_28339 0 0 1 2 33243761 33243782 mRNA hsa-miR-193a-3p RPS18 miRanda miRanda
2948 chr6 33243778 33243778 1 + C T LUAD 33243759 + 33243739 33243779 41 CAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCCA CAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCTA < 41bp 1 0.34970026891938 1 0.157465636730194 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243759 chr6:33243778 stopgain 0.998 1 40 hm5C_associated_SNPs_28339 0 0 1 2 33243761 33243782 mRNA hsa-miR-193b RPS18 miRanda miRanda
2949 chr6 33243778 33243778 1 + C T LUAD 33243772 + 33243752 33243792 41 TGATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCA TGATCACCATTATGCAGAATCCACGCTAGTACAAGATCCCA < 41bp 1 0.26903442632418 1 0.031734436750412 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243772 chr6:33243778 stopgain 0.998 1 27 hm5C_associated_SNPs_28340 0 0 1 2 33243761 33243782 mRNA hsa-miR-193a-3p RPS18 miRanda miRanda
2950 chr6 33243778 33243778 1 + C T LUAD 33243772 + 33243752 33243792 41 TGATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCA TGATCACCATTATGCAGAATCCACGCTAGTACAAGATCCCA < 41bp 1 0.26903442632418 1 0.031734436750412 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243772 chr6:33243778 stopgain 0.998 1 27 hm5C_associated_SNPs_28340 0 0 1 2 33243761 33243782 mRNA hsa-miR-193b RPS18 miRanda miRanda
2951 chr1 120285561 120285561 1 + G T LUAD 120285545 + 120285525 120285565 41 GGGCTTGGTCCAAGGCACTACGCCTGTACTGCAGGGGCTCA GGGCTTGGTCCAAGGCACTACGCCTGTACTGCAGGGTCTCA < 41bp 1 0.511263369894152 1 0.055134654045105 experiment 0.977473260211695 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120285545 chr1:120285561 synonymous SNV . 0 37 hm5C_associated_SNPs_28371 0 0 1 1 120285550 120285572 mRNA hsa-miR-136 PHGDH miRanda miRanda
2952 chr1 120285561 120285561 1 + G T LUAD 120285547 + 120285527 120285567 41 GCTTGGTCCAAGGCACTACGCCTGTACTGCAGGGGCTCAAT GCTTGGTCCAAGGCACTACGCCTGTACTGCAGGGTCTCAAT < 41bp 1 0.253372236320872 1 0.0160441398620605 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120285547 chr1:120285561 synonymous SNV . 0 35 hm5C_associated_SNPs_28372 0 0 1 1 120285550 120285572 mRNA hsa-miR-136 PHGDH miRanda miRanda
2953 chr12 22208502 22208502 1 + G A LUAD 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TCTCTGTTATGAGACGCCATCAGTTTCGATGGAGTGAAATT < 41bp 1 0.303879355808166 1 0.106404840946198 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208502 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_28376 0 0 1 3 22208487 22208507 mRNA hsa-miR-371-5p CMAS miRanda miRanda
2954 chr12 22208502 22208502 1 + G A LUAD 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TCTCTGTTATGAGACGCCATCAGTTTCGATGGAGTGAAATT < 41bp 1 0.303879355808166 1 0.106404840946198 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208502 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_28376 0 0 1 3 22208484 22208506 mRNA hsa-miR-377 CMAS miRanda miRanda
2955 chr12 22208502 22208502 1 + G A LUAD 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TCTCTGTTATGAGACGCCATCAGTTTCGATGGAGTGAAATT < 41bp 1 0.303879355808166 1 0.106404840946198 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208502 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_28376 0 0 1 3 22208484 22208507 mRNA hsa-miR-342-3p CMAS miRanda miRanda
2956 chr11 65270568 65270568 1 + C G LUAD 65270555 + 65270535 65270575 41 GATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTT GATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCGAATGTTT < 41bp 1 0.471377060720704 1 0.181026488542557 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270555 chr11:65270568 . . 0 34 hm5C_associated_SNPs_28382 0 0 1 3 65270552 65270577 lncRNA hsa-miR-494-3p MALAT1 miRanda starBase2
2957 chr11 65270568 65270568 1 + C G LUAD 65270555 + 65270535 65270575 41 GATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTT GATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCGAATGTTT < 41bp 1 0.471377060720704 1 0.181026488542557 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270555 chr11:65270568 . . 0 34 hm5C_associated_SNPs_28382 0 0 1 3 65270550 65270571 lncRNA hsa-miR-1271-5p MALAT1 miRanda starBase2
2958 chr11 65270568 65270568 1 + C G LUAD 65270555 + 65270535 65270575 41 GATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTT GATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCGAATGTTT < 41bp 1 0.471377060720704 1 0.181026488542557 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270555 chr11:65270568 . . 0 34 hm5C_associated_SNPs_28382 0 0 1 3 65270548 65270571 lncRNA hsa-miR-96-5p MALAT1 miRanda starBase2
2959 chr11 65270568 65270568 1 + C G LUAD 65270560 + 65270540 65270580 41 AGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTT AGTGGATTGAGGAGGCTGTGCTGTGTGCGAATGTTTCGTTT < 41bp 1 0.558570455572122 1 0.110893368721008 experiment 0.882859088855755 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270560 chr11:65270568 . . 0 29 hm5C_associated_SNPs_28383 0 0 1 3 65270552 65270577 lncRNA hsa-miR-494-3p MALAT1 miRanda starBase2
2960 chr11 65270568 65270568 1 + C G LUAD 65270560 + 65270540 65270580 41 AGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTT AGTGGATTGAGGAGGCTGTGCTGTGTGCGAATGTTTCGTTT < 41bp 1 0.558570455572122 1 0.110893368721008 experiment 0.882859088855755 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270560 chr11:65270568 . . 0 29 hm5C_associated_SNPs_28383 0 0 1 3 65270550 65270571 lncRNA hsa-miR-1271-5p MALAT1 miRanda starBase2
2961 chr11 65270568 65270568 1 + C G LUAD 65270560 + 65270540 65270580 41 AGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTT AGTGGATTGAGGAGGCTGTGCTGTGTGCGAATGTTTCGTTT < 41bp 1 0.558570455572122 1 0.110893368721008 experiment 0.882859088855755 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270560 chr11:65270568 . . 0 29 hm5C_associated_SNPs_28383 0 0 1 3 65270548 65270571 lncRNA hsa-miR-96-5p MALAT1 miRanda starBase2
2962 chr11 65270568 65270568 1 + C G LUAD 65270567 + 65270547 65270587 41 TGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTTGCCTCAG TGAGGAGGCTGTGCTGTGTGCGAATGTTTCGTTTGCCTCAG < 41bp 1 0.556961027196536 1 0.400014966726303 experiment 0.886077945606929 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270567 chr11:65270568 . . 0 22 hm5C_associated_SNPs_28384 0 0 1 3 65270552 65270577 lncRNA hsa-miR-494-3p MALAT1 miRanda starBase2
2963 chr11 65270568 65270568 1 + C G LUAD 65270567 + 65270547 65270587 41 TGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTTGCCTCAG TGAGGAGGCTGTGCTGTGTGCGAATGTTTCGTTTGCCTCAG < 41bp 1 0.556961027196536 1 0.400014966726303 experiment 0.886077945606929 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270567 chr11:65270568 . . 0 22 hm5C_associated_SNPs_28384 0 0 1 3 65270550 65270571 lncRNA hsa-miR-1271-5p MALAT1 miRanda starBase2
2964 chr11 65270568 65270568 1 + C G LUAD 65270567 + 65270547 65270587 41 TGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTTGCCTCAG TGAGGAGGCTGTGCTGTGTGCGAATGTTTCGTTTGCCTCAG < 41bp 1 0.556961027196536 1 0.400014966726303 experiment 0.886077945606929 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270567 chr11:65270568 . . 0 22 hm5C_associated_SNPs_28384 0 0 1 3 65270548 65270571 lncRNA hsa-miR-96-5p MALAT1 miRanda starBase2
2965 chr11 65273348 65273348 1 + G C LUAD 65273330 + 65273310 65273350 41 ACTGTAATGCTGGGTGGGAACATGTAACTTGTAGACTGGAG ACTGTAATGCTGGGTGGGAACATGTAACTTGTAGACTGCAG < 41bp 1 0.745764038040575 1 0.463474273681641 experiment 0.50847192391885 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273330 chr11:65273348 . . 0 39 hm5C_associated_SNPs_28389 0 0 1 3 65273341 65273365 lncRNA hsa-miR-105-5p MALAT1 miRanda starBase2
2966 chr11 65273348 65273348 1 + G C LUAD 65273330 + 65273310 65273350 41 ACTGTAATGCTGGGTGGGAACATGTAACTTGTAGACTGGAG ACTGTAATGCTGGGTGGGAACATGTAACTTGTAGACTGCAG < 41bp 1 0.745764038040575 1 0.463474273681641 experiment 0.50847192391885 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273330 chr11:65273348 . . 0 39 hm5C_associated_SNPs_28389 0 0 1 3 65273345 65273365 lncRNA hsa-miR-7853-5p MALAT1 miRanda starBase2
2967 chr11 65273348 65273348 1 + G C LUAD 65273330 + 65273310 65273350 41 ACTGTAATGCTGGGTGGGAACATGTAACTTGTAGACTGGAG ACTGTAATGCTGGGTGGGAACATGTAACTTGTAGACTGCAG < 41bp 1 0.745764038040575 1 0.463474273681641 experiment 0.50847192391885 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273330 chr11:65273348 . . 0 39 hm5C_associated_SNPs_28389 0 0 1 3 65273348 65273368 lncRNA hsa-miR-888-5p MALAT1 miRanda starBase2
2968 chr11 65273348 65273348 1 + G C LUAD 65273337 + 65273317 65273357 41 TGCTGGGTGGGAACATGTAACTTGTAGACTGGAGAAGATAG TGCTGGGTGGGAACATGTAACTTGTAGACTGCAGAAGATAG < 41bp 1 0.679527713840164 1 0.094802588224411 experiment 0.640944572319671 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273337 chr11:65273348 . . 0 32 hm5C_associated_SNPs_28390 0 0 1 3 65273341 65273365 lncRNA hsa-miR-105-5p MALAT1 miRanda starBase2
2969 chr11 65273348 65273348 1 + G C LUAD 65273337 + 65273317 65273357 41 TGCTGGGTGGGAACATGTAACTTGTAGACTGGAGAAGATAG TGCTGGGTGGGAACATGTAACTTGTAGACTGCAGAAGATAG < 41bp 1 0.679527713840164 1 0.094802588224411 experiment 0.640944572319671 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273337 chr11:65273348 . . 0 32 hm5C_associated_SNPs_28390 0 0 1 3 65273345 65273365 lncRNA hsa-miR-7853-5p MALAT1 miRanda starBase2
2970 chr11 65273348 65273348 1 + G C LUAD 65273337 + 65273317 65273357 41 TGCTGGGTGGGAACATGTAACTTGTAGACTGGAGAAGATAG TGCTGGGTGGGAACATGTAACTTGTAGACTGCAGAAGATAG < 41bp 1 0.679527713840164 1 0.094802588224411 experiment 0.640944572319671 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273337 chr11:65273348 . . 0 32 hm5C_associated_SNPs_28390 0 0 1 3 65273348 65273368 lncRNA hsa-miR-888-5p MALAT1 miRanda starBase2
2971 chr5 86670002 86670002 1 + T A LUAD 86670013 + 86669993 86670033 41 TTTTACATATTGAAGAAGCCCATAAACTCCCAGTAAAACAT TTTTACATAATGAAGAAGCCCATAAACTCCCAGTAAAACAT < 41bp 1 0.181962216281602 1 0.201029449701309 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RASA1 ENSG00000145715 CDS Human protein_coding chr5:86670013 chr5:86670002 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_28420 0 0 0 2 86669995 86670016 mRNA hsa-miR-135a RASA1 miRanda miRanda
2972 chr5 86670002 86670002 1 + T A LUAD 86670013 + 86669993 86670033 41 TTTTACATATTGAAGAAGCCCATAAACTCCCAGTAAAACAT TTTTACATAATGAAGAAGCCCATAAACTCCCAGTAAAACAT < 41bp 1 0.181962216281602 1 0.201029449701309 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RASA1 ENSG00000145715 CDS Human protein_coding chr5:86670013 chr5:86670002 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_28420 0 0 0 2 86669995 86670016 mRNA hsa-miR-135b RASA1 miRanda miRanda
2973 chr22 38046636 38046636 1 + C T LUAD 38046649 + 38046629 38046669 41 CTTCCGTCCACTGCCGTGCCCACCCCAGCCACCACCCCGGC CTTCCGTTCACTGCCGTGCCCACCCCAGCCACCACCCCGGC < 41bp 1 0.33079988068799 1 0.0234816670417786 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046649 chr22:38046636 nonsynonymous SNV 0.001 0 8 hm5C_associated_SNPs_28467 0 0 1 5 38046623 38046644 mRNA hsa-miR-34a SH3BP1 miRanda miRanda
2974 chr22 38046636 38046636 1 + C T LUAD 38046649 + 38046629 38046669 41 CTTCCGTCCACTGCCGTGCCCACCCCAGCCACCACCCCGGC CTTCCGTTCACTGCCGTGCCCACCCCAGCCACCACCCCGGC < 41bp 1 0.33079988068799 1 0.0234816670417786 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046649 chr22:38046636 nonsynonymous SNV 0.001 0 8 hm5C_associated_SNPs_28467 0 0 1 5 38046618 38046638 mRNA hsa-miR-184 SH3BP1 miRanda miRanda
2975 chr22 38046636 38046636 1 + C T LUAD 38046649 + 38046629 38046669 41 CTTCCGTCCACTGCCGTGCCCACCCCAGCCACCACCCCGGC CTTCCGTTCACTGCCGTGCCCACCCCAGCCACCACCCCGGC < 41bp 1 0.33079988068799 1 0.0234816670417786 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046649 chr22:38046636 nonsynonymous SNV 0.001 0 8 hm5C_associated_SNPs_28467 0 0 1 5 38046621 38046644 mRNA hsa-miR-34c-5p SH3BP1 miRanda miRanda
2976 chr22 38046636 38046636 1 + C T LUAD 38046649 + 38046629 38046669 41 CTTCCGTCCACTGCCGTGCCCACCCCAGCCACCACCCCGGC CTTCCGTTCACTGCCGTGCCCACCCCAGCCACCACCCCGGC < 41bp 1 0.33079988068799 1 0.0234816670417786 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046649 chr22:38046636 nonsynonymous SNV 0.001 0 8 hm5C_associated_SNPs_28467 0 0 1 5 38046623 38046644 mRNA hsa-miR-449a SH3BP1 miRanda miRanda
2977 chr22 38046636 38046636 1 + C T LUAD 38046649 + 38046629 38046669 41 CTTCCGTCCACTGCCGTGCCCACCCCAGCCACCACCCCGGC CTTCCGTTCACTGCCGTGCCCACCCCAGCCACCACCCCGGC < 41bp 1 0.33079988068799 1 0.0234816670417786 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046649 chr22:38046636 nonsynonymous SNV 0.001 0 8 hm5C_associated_SNPs_28467 0 0 1 5 38046623 38046644 mRNA hsa-miR-449b SH3BP1 miRanda miRanda
2978 chr1 109643148 109643148 1 + G T LUAD 109643144 + 109643124 109643164 41 AGGTCCCGGAGCTGGCCCTGCGGGGCCCGGCGCTCAGAAGT AGGTCCCGGAGCTGGCCCTGCGGGTCCCGGCGCTCAGAAGT < 41bp 1 0.73296973707266 1 0.813976287841797 experiment 0.534060525854679 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643144 chr1:109643148 . . 0 25 hm5C_associated_SNPs_28484 0 0 1 2 109643132 109643152 lncRNA hsa-miR-296-5p AL356488.2 miRanda starBase2
2979 chr1 109643148 109643148 1 + G T LUAD 109643144 + 109643124 109643164 41 AGGTCCCGGAGCTGGCCCTGCGGGGCCCGGCGCTCAGAAGT AGGTCCCGGAGCTGGCCCTGCGGGTCCCGGCGCTCAGAAGT < 41bp 1 0.73296973707266 1 0.813976287841797 experiment 0.534060525854679 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643144 chr1:109643148 . . 0 25 hm5C_associated_SNPs_28484 0 0 1 2 109643136 109643159 lncRNA hsa-miR-339-3p AL356488.2 miRanda starBase2
2980 chr1 109643148 109643148 1 + G T LUAD 109643149 + 109643129 109643169 41 CCGGAGCTGGCCCTGCGGGGCCCGGCGCTCAGAAGTGATGA CCGGAGCTGGCCCTGCGGGTCCCGGCGCTCAGAAGTGATGA < 41bp 1 0.554942641315839 1 0.110885202884674 experiment 0.890114717368322 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643149 chr1:109643148 . . 0 20 hm5C_associated_SNPs_28485 0 0 1 2 109643132 109643152 lncRNA hsa-miR-296-5p AL356488.2 miRanda starBase2
2981 chr1 109643148 109643148 1 + G T LUAD 109643149 + 109643129 109643169 41 CCGGAGCTGGCCCTGCGGGGCCCGGCGCTCAGAAGTGATGA CCGGAGCTGGCCCTGCGGGTCCCGGCGCTCAGAAGTGATGA < 41bp 1 0.554942641315839 1 0.110885202884674 experiment 0.890114717368322 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643149 chr1:109643148 . . 0 20 hm5C_associated_SNPs_28485 0 0 1 2 109643136 109643159 lncRNA hsa-miR-339-3p AL356488.2 miRanda starBase2
2982 chr1 109643148 109643148 1 + G T LUAD 109643150 + 109643130 109643170 41 CGGAGCTGGCCCTGCGGGGCCCGGCGCTCAGAAGTGATGAA CGGAGCTGGCCCTGCGGGTCCCGGCGCTCAGAAGTGATGAA < 41bp 1 0.488490427884284 1 0.326938807964325 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643150 chr1:109643148 . . 0 19 hm5C_associated_SNPs_28486 0 0 1 2 109643132 109643152 lncRNA hsa-miR-296-5p AL356488.2 miRanda starBase2
2983 chr1 109643148 109643148 1 + G T LUAD 109643150 + 109643130 109643170 41 CGGAGCTGGCCCTGCGGGGCCCGGCGCTCAGAAGTGATGAA CGGAGCTGGCCCTGCGGGTCCCGGCGCTCAGAAGTGATGAA < 41bp 1 0.488490427884284 1 0.326938807964325 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643150 chr1:109643148 . . 0 19 hm5C_associated_SNPs_28486 0 0 1 2 109643136 109643159 lncRNA hsa-miR-339-3p AL356488.2 miRanda starBase2
2984 chr1 109643148 109643148 1 + G T LUAD 109643154 + 109643134 109643174 41 GCTGGCCCTGCGGGGCCCGGCGCTCAGAAGTGATGAATTGA GCTGGCCCTGCGGGTCCCGGCGCTCAGAAGTGATGAATTGA < 41bp 1 0.2511147147205 1 0.259146451950073 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643154 chr1:109643148 . . 0 15 hm5C_associated_SNPs_28487 0 0 1 2 109643132 109643152 lncRNA hsa-miR-296-5p AL356488.2 miRanda starBase2
2985 chr1 109643148 109643148 1 + G T LUAD 109643154 + 109643134 109643174 41 GCTGGCCCTGCGGGGCCCGGCGCTCAGAAGTGATGAATTGA GCTGGCCCTGCGGGTCCCGGCGCTCAGAAGTGATGAATTGA < 41bp 1 0.2511147147205 1 0.259146451950073 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643154 chr1:109643148 . . 0 15 hm5C_associated_SNPs_28487 0 0 1 2 109643136 109643159 lncRNA hsa-miR-339-3p AL356488.2 miRanda starBase2
2986 chr1 109643148 109643148 1 + G T LUAD 109643156 + 109643136 109643176 41 TGGCCCTGCGGGGCCCGGCGCTCAGAAGTGATGAATTGATC TGGCCCTGCGGGTCCCGGCGCTCAGAAGTGATGAATTGATC < 41bp 1 0.459126715436587 1 0.182366460561752 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643156 chr1:109643148 . . 0 13 hm5C_associated_SNPs_28488 0 0 1 2 109643132 109643152 lncRNA hsa-miR-296-5p AL356488.2 miRanda starBase2
2987 chr1 109643148 109643148 1 + G T LUAD 109643156 + 109643136 109643176 41 TGGCCCTGCGGGGCCCGGCGCTCAGAAGTGATGAATTGATC TGGCCCTGCGGGTCCCGGCGCTCAGAAGTGATGAATTGATC < 41bp 1 0.459126715436587 1 0.182366460561752 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643156 chr1:109643148 . . 0 13 hm5C_associated_SNPs_28488 0 0 1 2 109643136 109643159 lncRNA hsa-miR-339-3p AL356488.2 miRanda starBase2
2988 chr16 67918045 67918045 1 + C T LUSC 67918061 + 67918041 67918081 41 GCCTCCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA GCCTTCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA < 41bp 1 0.439431358448748 1 0.0885667502880096 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67918061 chr16:67918045 synonymous SNV . 0 5 hm5C_associated_SNPs_28533 0 0 1 8 67918038 67918059 lncRNA hsa-miR-374b-3p AC040162.3 miRanda starBase2
2989 chr16 67918045 67918045 1 + C T LUSC 67918061 + 67918041 67918081 41 GCCTCCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA GCCTTCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA < 41bp 1 0.439431358448748 1 0.0885667502880096 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67918061 chr16:67918045 synonymous SNV . 0 5 hm5C_associated_SNPs_28533 0 0 1 8 67918038 67918058 lncRNA hsa-miR-4524a-5p AC040162.3 miRanda starBase2
2990 chr16 67918045 67918045 1 + C T LUSC 67918061 + 67918041 67918081 41 GCCTCCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA GCCTTCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA < 41bp 1 0.439431358448748 1 0.0885667502880096 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67918061 chr16:67918045 synonymous SNV . 0 5 hm5C_associated_SNPs_28533 0 0 1 8 67918039 67918058 lncRNA hsa-miR-4524b-5p AC040162.3 miRanda starBase2
2991 chr16 67918045 67918045 1 + C T LUSC 67918061 + 67918041 67918081 41 GCCTCCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA GCCTTCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA < 41bp 1 0.439431358448748 1 0.0885667502880096 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67918061 chr16:67918045 synonymous SNV . 0 5 hm5C_associated_SNPs_28533 0 0 1 8 67918031 67918049 lncRNA hsa-miR-1321 AC040162.3 miRanda starBase2
2992 chr16 67918045 67918045 1 + C T LUSC 67918061 + 67918041 67918081 41 GCCTCCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA GCCTTCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA < 41bp 1 0.439431358448748 1 0.0885667502880096 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67918061 chr16:67918045 synonymous SNV . 0 5 hm5C_associated_SNPs_28533 0 0 1 8 67918023 67918049 lncRNA hsa-miR-4739 AC040162.3 miRanda starBase2
2993 chr16 67918045 67918045 1 + C T LUSC 67918061 + 67918041 67918081 41 GCCTCCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA GCCTTCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA < 41bp 1 0.439431358448748 1 0.0885667502880096 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67918061 chr16:67918045 synonymous SNV . 0 5 hm5C_associated_SNPs_28533 0 0 1 8 67918023 67918049 lncRNA hsa-miR-4756-5p AC040162.3 miRanda starBase2
2994 chr16 67918045 67918045 1 + C T LUSC 67918061 + 67918041 67918081 41 GCCTCCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA GCCTTCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA < 41bp 1 0.439431358448748 1 0.0885667502880096 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67918061 chr16:67918045 synonymous SNV . 0 5 hm5C_associated_SNPs_28533 0 0 1 8 67918025 67918046 lncRNA hsa-miR-485-5p AC040162.3 miRanda starBase2
2995 chr16 67918045 67918045 1 + C T LUSC 67918061 + 67918041 67918081 41 GCCTCCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA GCCTTCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA < 41bp 1 0.439431358448748 1 0.0885667502880096 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67918061 chr16:67918045 synonymous SNV . 0 5 hm5C_associated_SNPs_28533 0 0 1 8 67918027 67918046 lncRNA hsa-miR-6884-5p AC040162.3 miRanda starBase2
2996 chr3 119205770 119205770 1 + A T LUSC 119205764 + 119205744 119205784 41 GAATACACCAAAAACCAGGCCTGGAAATCTATGAAAGTAAT GAATACACCAAAAACCAGGCCTGGAATTCTATGAAAGTAAT < 41bp 1 0.654110429566307 1 0.162904053926468 experiment 0.691779140867386 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119205764 chr3:119205770 nonsynonymous SNV 0.994 4 27 hm5C_associated_SNPs_28612 0 0 1 4 119205762 119205778 mRNA hsa-miR-376c KTELC1 miRanda miRanda
2997 chr3 119205770 119205770 1 + A T LUSC 119205764 + 119205744 119205784 41 GAATACACCAAAAACCAGGCCTGGAAATCTATGAAAGTAAT GAATACACCAAAAACCAGGCCTGGAATTCTATGAAAGTAAT < 41bp 1 0.654110429566307 1 0.162904053926468 experiment 0.691779140867386 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119205764 chr3:119205770 nonsynonymous SNV 0.994 4 27 hm5C_associated_SNPs_28612 0 0 1 4 119205758 119205778 mRNA hsa-miR-376a KTELC1 miRanda miRanda
2998 chr3 119205770 119205770 1 + A T LUSC 119205764 + 119205744 119205784 41 GAATACACCAAAAACCAGGCCTGGAAATCTATGAAAGTAAT GAATACACCAAAAACCAGGCCTGGAATTCTATGAAAGTAAT < 41bp 1 0.654110429566307 1 0.162904053926468 experiment 0.691779140867386 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119205764 chr3:119205770 nonsynonymous SNV 0.994 4 27 hm5C_associated_SNPs_28612 0 0 1 4 119205757 119205778 mRNA hsa-miR-376b KTELC1 miRanda miRanda
2999 chr3 119205770 119205770 1 + A T LUSC 119205764 + 119205744 119205784 41 GAATACACCAAAAACCAGGCCTGGAAATCTATGAAAGTAAT GAATACACCAAAAACCAGGCCTGGAATTCTATGAAAGTAAT < 41bp 1 0.654110429566307 1 0.162904053926468 experiment 0.691779140867386 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119205764 chr3:119205770 nonsynonymous SNV 0.994 4 27 hm5C_associated_SNPs_28612 0 0 1 4 119205753 119205774 mRNA hsa-miR-876-5p KTELC1 miRanda miRanda
3000 chrX 73043319 73043319 1 - C T LUSC 73043299 - 73043279 73043319 41 GAGAGATGAGGGCATTAGATCACTGACAGCTGAAGATAGAA AAGAGATGAGGGCATTAGATCACTGACAGCTGAAGATAGAA < 41bp 1 0.127878877845822 1 0.0734447836875916 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043299 chrX:73043319 . . 0 1 hm5C_associated_SNPs_28697 0 0 1 2 73043303 73043324 lncRNA hsa-miR-365a-3p XIST miRanda starBase2
3001 chrX 73043319 73043319 1 - C T LUSC 73043299 - 73043279 73043319 41 GAGAGATGAGGGCATTAGATCACTGACAGCTGAAGATAGAA AAGAGATGAGGGCATTAGATCACTGACAGCTGAAGATAGAA < 41bp 1 0.127878877845822 1 0.0734447836875916 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043299 chrX:73043319 . . 0 1 hm5C_associated_SNPs_28697 0 0 1 2 73043303 73043324 lncRNA hsa-miR-365b-3p XIST miRanda starBase2
3002 chrX 73043319 73043319 1 - C T LUSC 73043307 - 73043287 73043327 41 GAGGATAAGAGAGATGAGGGCATTAGATCACTGACAGCTGA GAGGATAAAAGAGATGAGGGCATTAGATCACTGACAGCTGA < 41bp 1 0.0823378511143115 1 0.0915734469890594 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043307 chrX:73043319 . . 0 9 hm5C_associated_SNPs_28698 0 0 1 2 73043303 73043324 lncRNA hsa-miR-365a-3p XIST miRanda starBase2
3003 chrX 73043319 73043319 1 - C T LUSC 73043307 - 73043287 73043327 41 GAGGATAAGAGAGATGAGGGCATTAGATCACTGACAGCTGA GAGGATAAAAGAGATGAGGGCATTAGATCACTGACAGCTGA < 41bp 1 0.0823378511143115 1 0.0915734469890594 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043307 chrX:73043319 . . 0 9 hm5C_associated_SNPs_28698 0 0 1 2 73043303 73043324 lncRNA hsa-miR-365b-3p XIST miRanda starBase2
3004 chr20 43545460 43545460 1 + G T LUSC 43545459 + 43545439 43545479 41 CATTTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACAC CATTTTGAGACCCATGAGGCCTCACAGCAGGCCATCAACAC < 41bp 1 0.198485251841933 1 0.0210385918617249 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545459 chr20:43545460 nonsynonymous SNV 0.062 4 22 hm5C_associated_SNPs_28812 0 0 1 1 43545452 43545470 mRNA hsa-miR-370 PABPC1L miRanda miRanda
3005 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312537 16312558 mRNA hsa-miR-17 OXNAD1 miRanda miRanda
3006 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312537 16312558 mRNA hsa-miR-20a OXNAD1 miRanda miRanda
3007 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312537 16312558 mRNA hsa-miR-93 OXNAD1 miRanda miRanda
3008 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312537 16312558 mRNA hsa-miR-106a OXNAD1 miRanda miRanda
3009 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312539 16312558 mRNA hsa-miR-106b OXNAD1 miRanda miRanda
3010 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312532 16312557 mRNA hsa-miR-302a OXNAD1 miRanda miRanda
3011 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312532 16312557 mRNA hsa-miR-302b OXNAD1 miRanda miRanda
3012 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312532 16312557 mRNA hsa-miR-302c OXNAD1 miRanda miRanda
3013 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312532 16312557 mRNA hsa-miR-302d OXNAD1 miRanda miRanda
3014 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312532 16312557 mRNA hsa-miR-372 OXNAD1 miRanda miRanda
3015 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312530 16312557 mRNA hsa-miR-373 OXNAD1 miRanda miRanda
3016 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312537 16312558 mRNA hsa-miR-20b OXNAD1 miRanda miRanda
3017 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312537 16312557 mRNA hsa-miR-520e OXNAD1 miRanda miRanda
3018 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312536 16312557 mRNA hsa-miR-520a-3p OXNAD1 miRanda miRanda
3019 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312537 16312557 mRNA hsa-miR-520b OXNAD1 miRanda miRanda
3020 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312536 16312557 mRNA hsa-miR-520c-3p OXNAD1 miRanda miRanda
3021 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312537 16312558 mRNA hsa-miR-519d OXNAD1 miRanda miRanda
3022 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312530 16312557 mRNA hsa-miR-520d-3p OXNAD1 miRanda miRanda
3023 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 16312541 16312557 mRNA hsa-miR-302e OXNAD1 miRanda miRanda
3024 chr19 21300974 21300974 1 + C T LUSC 21300990 + 21300970 21301010 41 AATTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACA AATTTAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACA < 41bp 1 0.352609149925249 1 0.108564257621765 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300990 chr19:21300974 stopgain 0.006 0 5 hm5C_associated_SNPs_28888 0 0 1 1 21300960 21300981 mRNA hsa-miR-370 ZNF714 miRanda miRanda
3025 chr19 21300974 21300974 1 + C T LUSC 21300992 + 21300972 21301012 41 TTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACT TTTAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACT < 41bp 1 0.293607044684408 1 0.116174429655075 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300992 chr19:21300974 stopgain 0.006 0 3 hm5C_associated_SNPs_28889 0 0 1 1 21300960 21300981 mRNA hsa-miR-370 ZNF714 miRanda miRanda
3026 chr19 21300975 21300975 1 + A G LUSC 21300990 + 21300970 21301010 41 AATTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACA AATTCGGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACA < 41bp 1 0.382891025208617 1 0.0984289944171906 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300990 chr19:21300975 nonsynonymous SNV 0.007 0 6 hm5C_associated_SNPs_28890 0 0 1 1 21300960 21300981 mRNA hsa-miR-370 ZNF714 miRanda miRanda
3027 chr19 21300975 21300975 1 + A G LUSC 21300992 + 21300972 21301012 41 TTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACT TTCGGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACT < 41bp 1 0.270644431482821 1 0.0822239518165588 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300992 chr19:21300975 nonsynonymous SNV 0.007 0 4 hm5C_associated_SNPs_28891 0 0 1 1 21300960 21300981 mRNA hsa-miR-370 ZNF714 miRanda miRanda
3028 chr10 70506929 70506929 1 + G T LUSC 70506935 + 70506915 70506955 41 CAGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAG CAGTGCTGTCAAAGTGAAAACCCCCCAAGTAGGTGACAGAG < 41bp 1 0.138417109890292 1 0.210924953222275 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506935 chr10:70506929 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_28915 0 0 1 2 70506918 70506932 mRNA hsa-miR-204 CCAR1 miRanda miRanda
3029 chr10 70506929 70506929 1 + G T LUSC 70506935 + 70506915 70506955 41 CAGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAG CAGTGCTGTCAAAGTGAAAACCCCCCAAGTAGGTGACAGAG < 41bp 1 0.138417109890292 1 0.210924953222275 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506935 chr10:70506929 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_28915 0 0 1 2 70506918 70506932 mRNA hsa-miR-211 CCAR1 miRanda miRanda
3030 chr10 70506929 70506929 1 + G T LUSC 70506936 + 70506916 70506956 41 AGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGT AGTGCTGTCAAAGTGAAAACCCCCCAAGTAGGTGACAGAGT < 41bp 1 0.142864042600363 1 0.208108872175217 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506936 chr10:70506929 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_28916 0 0 1 2 70506918 70506932 mRNA hsa-miR-204 CCAR1 miRanda miRanda
3031 chr10 70506929 70506929 1 + G T LUSC 70506936 + 70506916 70506956 41 AGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGT AGTGCTGTCAAAGTGAAAACCCCCCAAGTAGGTGACAGAGT < 41bp 1 0.142864042600363 1 0.208108872175217 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506936 chr10:70506929 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_28916 0 0 1 2 70506918 70506932 mRNA hsa-miR-211 CCAR1 miRanda miRanda
3032 chr10 70506929 70506929 1 + G T LUSC 70506937 + 70506917 70506957 41 GTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTA GTGCTGTCAAAGTGAAAACCCCCCAAGTAGGTGACAGAGTA < 41bp 1 0.493439383748196 1 0.338229566812515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506937 chr10:70506929 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_28917 0 0 1 2 70506918 70506932 mRNA hsa-miR-204 CCAR1 miRanda miRanda
3033 chr10 70506929 70506929 1 + G T LUSC 70506937 + 70506917 70506957 41 GTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTA GTGCTGTCAAAGTGAAAACCCCCCAAGTAGGTGACAGAGTA < 41bp 1 0.493439383748196 1 0.338229566812515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506937 chr10:70506929 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_28917 0 0 1 2 70506918 70506932 mRNA hsa-miR-211 CCAR1 miRanda miRanda
3034 chr10 70506929 70506929 1 + G T LUSC 70506938 + 70506918 70506958 41 TGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTAT TGCTGTCAAAGTGAAAACCCCCCAAGTAGGTGACAGAGTAT < 41bp 1 0.308670706701291 1 0.231115907430649 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506938 chr10:70506929 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_28918 0 0 1 2 70506918 70506932 mRNA hsa-miR-204 CCAR1 miRanda miRanda
3035 chr10 70506929 70506929 1 + G T LUSC 70506938 + 70506918 70506958 41 TGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTAT TGCTGTCAAAGTGAAAACCCCCCAAGTAGGTGACAGAGTAT < 41bp 1 0.308670706701291 1 0.231115907430649 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506938 chr10:70506929 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_28918 0 0 1 2 70506918 70506932 mRNA hsa-miR-211 CCAR1 miRanda miRanda
3036 chr20 2843947 2843947 1 + G C LUSC 2843957 + 2843937 2843977 41 CTCGTGTTGCGGAGACTTTACCCCCTGGCCATCCAGATATG CTCGTGTTGCCGAGACTTTACCCCCTGGCCATCCAGATATG < 41bp 1 0.250862554575731 1 0.0417172014713287 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843957 chr20:2843947 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_28921 0 0 0 1 2843936 2843951 mRNA hsa-miR-150 VPS16 miRanda miRanda
3037 chr13 48937009 48937009 1 + G T LUSC 48936995 + 48936975 48937015 41 GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCA GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGTAGTGCA < 41bp 1 0.642194282362834 1 0.864266395568848 experiment 0.715611435274331 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48936995 chr13:48937009 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_28990 0 0 1 2 48937009 48937029 mRNA hsa-miR-129-5p RB1 miRanda miRanda
3038 chr13 48937009 48937009 1 + G T LUSC 48936995 + 48936975 48937015 41 GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCA GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGTAGTGCA < 41bp 1 0.642194282362834 1 0.864266395568848 experiment 0.715611435274331 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48936995 chr13:48937009 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_28990 0 0 1 2 48936998 48937019 mRNA hsa-miR-148a RB1 miRanda miRanda
3039 chr5 102472515 102472515 1 + C G LUSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGACTTGAATATGCAGTATCTGATACAAGATAGG < 41bp 1 0.388813848474402 1 0.190113127231598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472515 synonymous SNV . 0 29 hm5C_associated_SNPs_29019 0 0 1 2 102472493 102472516 mRNA hsa-miR-146a PPIP5K2 miRanda miRanda
3040 chr5 102472515 102472515 1 + C G LUSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGACTTGAATATGCAGTATCTGATACAAGATAGG < 41bp 1 0.388813848474402 1 0.190113127231598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472515 synonymous SNV . 0 29 hm5C_associated_SNPs_29019 0 0 1 2 102472494 102472516 mRNA hsa-miR-146b-5p PPIP5K2 miRanda miRanda
3041 chr10 17277852 17277852 1 + C T LUSC 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGGATTTCTTTGCCTCTTCCAAACTTTTCCTCCCTG < 41bp 1 0.0664302417800743 1 0.443943440914154 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277852 synonymous SNV . 0 15 hm5C_associated_SNPs_29020 0 0 1 1 17277845 17277853 mRNA hsa-miR-539 VIM miRanda miRanda
3042 chrX 73045978 73045978 1 - G C LUSC 73045992 - 73045972 73046012 41 TACACAGATGTGCCAGACTTCTGAGAAGCACCTGCCAGCAA TACACAGATGTGCCAGACTTCTGAGAAGCACCTGGCAGCAA < 41bp 1 0.532287030623885 1 0.661497056484222 experiment 0.935425938752229 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045992 chrX:73045978 . . 0 35 hm5C_associated_SNPs_29023 0 0 1 1 73045960 73045981 lncRNA hsa-miR-1252-5p XIST miRanda starBase2
3043 chrX 73045978 73045978 1 - G C LUSC 73045995 - 73045975 73046015 41 AAATACACAGATGTGCCAGACTTCTGAGAAGCACCTGCCAG AAATACACAGATGTGCCAGACTTCTGAGAAGCACCTGGCAG < 41bp 1 0.138119273995158 1 0.0561209917068481 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045995 chrX:73045978 . . 0 38 hm5C_associated_SNPs_29024 0 0 1 1 73045960 73045981 lncRNA hsa-miR-1252-5p XIST miRanda starBase2
3044 chr22 30818321 30818321 1 + C T LUSC 30818334 + 30818314 30818354 41 TCAATTTCACTGTGGAGGTCCTGCTTCCAGACAAAGCCTCA TCAATTTTACTGTGGAGGTCCTGCTTCCAGACAAAGCCTCA < 41bp 1 0.203439474004772 1 0.137955993413925 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC14L2 ENSG00000100003 CDS Human protein_coding chr22:30818334 chr22:30818321 synonymous SNV . 0 8 hm5C_associated_SNPs_29066 0 0 0 1 30818306 30818328 mRNA hsa-miR-128 SEC14L2 miRanda miRanda
3045 chr7 114302136 114302136 1 + A G LUSC 114302124 + 114302104 114302144 41 CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTAGCC CTTCTGTCTGCTTTAGAATGCAGTACGTCATAGTCTTAGCC < 41bp 1 0.228226197449444 1 0.30824401974678 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114302124 chr7:114302136 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_29103 0 0 1 3 114302124 114302145 mRNA hsa-miR-31 FOXP2 miRanda miRanda
3046 chr7 114302136 114302136 1 + A G LUSC 114302124 + 114302104 114302144 41 CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTAGCC CTTCTGTCTGCTTTAGAATGCAGTACGTCATAGTCTTAGCC < 41bp 1 0.228226197449444 1 0.30824401974678 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114302124 chr7:114302136 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_29103 0 0 1 3 114302134 114302157 mRNA hsa-miR-141 FOXP2 miRanda miRanda
3047 chr7 114302136 114302136 1 + A G LUSC 114302124 + 114302104 114302144 41 CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTAGCC CTTCTGTCTGCTTTAGAATGCAGTACGTCATAGTCTTAGCC < 41bp 1 0.228226197449444 1 0.30824401974678 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114302124 chr7:114302136 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_29103 0 0 1 3 114302134 114302157 mRNA hsa-miR-200a FOXP2 miRanda miRanda
3048 chr14 60592500 60592500 1 + G A LUSC 60592489 + 60592469 60592509 41 TGATGAAAAGTGGAAGGAAGCAATTTTACAAGAAAAGCCAT TGATGAAAAGTGGAAGGAAGCAATTTTACAAAAAAAGCCAT < 41bp 1 0.274576597703254 1 0.253730893135071 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60592489 chr14:60592500 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_29115 0 0 1 2 60592488 60592510 mRNA hsa-miR-135a C14orf135 miRanda miRanda
3049 chr14 60592500 60592500 1 + G A LUSC 60592489 + 60592469 60592509 41 TGATGAAAAGTGGAAGGAAGCAATTTTACAAGAAAAGCCAT TGATGAAAAGTGGAAGGAAGCAATTTTACAAAAAAAGCCAT < 41bp 1 0.274576597703254 1 0.253730893135071 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60592489 chr14:60592500 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_29115 0 0 1 2 60592488 60592510 mRNA hsa-miR-135b C14orf135 miRanda miRanda
3050 chr6 42603239 42603239 1 + A G LUSC 42603221 + 42603201 42603241 41 GAACCAGAGTGGGAAGCAGCCTTCACACTACAAATGAAATT GAACCAGAGTGGGAAGCAGCCTTCACACTACAAATGAAGTT < 41bp 1 0.35749475189811 1 0.217144817113876 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBR2 ENSG00000024048 CDS Human protein_coding chr6:42603221 chr6:42603239 synonymous SNV . 0 39 hm5C_associated_SNPs_29131 0 0 1 1 42603237 42603258 mRNA hsa-miR-203 UBR2 miRanda miRanda
3051 chr3 134851685 134851685 1 + G A LUSC 134851688 + 134851668 134851708 41 CATCTGCAAAAAGTGCCGGGCAGACCGCCGGAGCTGCTCCC CATCTGCAAAAAGTGCCAGGCAGACCGCCGGAGCTGCTCCC < 41bp 1 0.155605167780165 1 0.670569658279419 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134851688 chr3:134851685 nonsynonymous SNV 0.932 0 18 hm5C_associated_SNPs_29170 0 0 0 1 134851669 134851693 mRNA hsa-miR-346 EPHB1 miRanda miRanda
3052 chr17 62223701 62223701 1 + G A LUSC 62223702 + 62223682 62223722 41 TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGA TGTGTGTCGTTGGCGACGCACTGTCTTTGAGCCCCCGCCGA < 41bp 1 0.326973049955118 1 0.0690600275993347 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223702 chr17:62223701 . . 0 20 hm5C_associated_SNPs_29177 0 0 1 3 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
3053 chr17 62223701 62223701 1 + G A LUSC 62223702 + 62223682 62223722 41 TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGA TGTGTGTCGTTGGCGACGCACTGTCTTTGAGCCCCCGCCGA < 41bp 1 0.326973049955118 1 0.0690600275993347 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223702 chr17:62223701 . . 0 20 hm5C_associated_SNPs_29177 0 0 1 3 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
3054 chr17 62223701 62223701 1 + G A LUSC 62223702 + 62223682 62223722 41 TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGA TGTGTGTCGTTGGCGACGCACTGTCTTTGAGCCCCCGCCGA < 41bp 1 0.326973049955118 1 0.0690600275993347 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223702 chr17:62223701 . . 0 20 hm5C_associated_SNPs_29177 0 0 1 3 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
3055 chr17 62223701 62223701 1 + G A LUSC 62223706 + 62223686 62223726 41 TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTT TGTCGTTGGCGACGCACTGTCTTTGAGCCCCCGCCGAGCTT < 41bp 1 0.273810323959022 1 0.0939969122409821 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223706 chr17:62223701 . . 0 16 hm5C_associated_SNPs_29178 0 0 1 3 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
3056 chr17 62223701 62223701 1 + G A LUSC 62223706 + 62223686 62223726 41 TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTT TGTCGTTGGCGACGCACTGTCTTTGAGCCCCCGCCGAGCTT < 41bp 1 0.273810323959022 1 0.0939969122409821 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223706 chr17:62223701 . . 0 16 hm5C_associated_SNPs_29178 0 0 1 3 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
3057 chr17 62223701 62223701 1 + G A LUSC 62223706 + 62223686 62223726 41 TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTT TGTCGTTGGCGACGCACTGTCTTTGAGCCCCCGCCGAGCTT < 41bp 1 0.273810323959022 1 0.0939969122409821 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223706 chr17:62223701 . . 0 16 hm5C_associated_SNPs_29178 0 0 1 3 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
3058 chr17 62223701 62223701 1 + G A LUSC 62223713 + 62223693 62223733 41 GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG GGCGACGCACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG < 41bp 1 0.124161338534744 1 0.0626926124095917 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223713 chr17:62223701 . . 0 9 hm5C_associated_SNPs_29179 0 0 1 3 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
3059 chr17 62223701 62223701 1 + G A LUSC 62223713 + 62223693 62223733 41 GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG GGCGACGCACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG < 41bp 1 0.124161338534744 1 0.0626926124095917 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223713 chr17:62223701 . . 0 9 hm5C_associated_SNPs_29179 0 0 1 3 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
3060 chr17 62223701 62223701 1 + G A LUSC 62223713 + 62223693 62223733 41 GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG GGCGACGCACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG < 41bp 1 0.124161338534744 1 0.0626926124095917 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223713 chr17:62223701 . . 0 9 hm5C_associated_SNPs_29179 0 0 1 3 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
3061 chr17 62223701 62223701 1 + G A LUSC 62223714 + 62223694 62223734 41 GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG GCGACGCACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG < 41bp 1 0.288915565579218 1 0.057823657989502 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223714 chr17:62223701 . . 0 8 hm5C_associated_SNPs_29180 0 0 1 3 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
3062 chr17 62223701 62223701 1 + G A LUSC 62223714 + 62223694 62223734 41 GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG GCGACGCACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG < 41bp 1 0.288915565579218 1 0.057823657989502 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223714 chr17:62223701 . . 0 8 hm5C_associated_SNPs_29180 0 0 1 3 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
3063 chr17 62223701 62223701 1 + G A LUSC 62223714 + 62223694 62223734 41 GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG GCGACGCACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG < 41bp 1 0.288915565579218 1 0.057823657989502 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223714 chr17:62223701 . . 0 8 hm5C_associated_SNPs_29180 0 0 1 3 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
3064 chr17 62223701 62223701 1 + G A LUSC 62223715 + 62223695 62223735 41 CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC CGACGCACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC < 41bp 1 0.237998507647646 1 0.0720716416835785 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223715 chr17:62223701 . . 0 7 hm5C_associated_SNPs_29181 0 0 1 3 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
3065 chr17 62223701 62223701 1 + G A LUSC 62223715 + 62223695 62223735 41 CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC CGACGCACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC < 41bp 1 0.237998507647646 1 0.0720716416835785 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223715 chr17:62223701 . . 0 7 hm5C_associated_SNPs_29181 0 0 1 3 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
3066 chr17 62223701 62223701 1 + G A LUSC 62223715 + 62223695 62223735 41 CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC CGACGCACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC < 41bp 1 0.237998507647646 1 0.0720716416835785 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223715 chr17:62223701 . . 0 7 hm5C_associated_SNPs_29181 0 0 1 3 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
3067 chr17 62223701 62223701 1 + G A LUSC 62223716 + 62223696 62223736 41 GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG GACGCACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG < 41bp 1 0.115603778392 1 0.0605391561985016 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223716 chr17:62223701 . . 0 6 hm5C_associated_SNPs_29182 0 0 1 3 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
3068 chr17 62223701 62223701 1 + G A LUSC 62223716 + 62223696 62223736 41 GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG GACGCACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG < 41bp 1 0.115603778392 1 0.0605391561985016 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223716 chr17:62223701 . . 0 6 hm5C_associated_SNPs_29182 0 0 1 3 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
3069 chr17 62223701 62223701 1 + G A LUSC 62223716 + 62223696 62223736 41 GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG GACGCACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG < 41bp 1 0.115603778392 1 0.0605391561985016 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223716 chr17:62223701 . . 0 6 hm5C_associated_SNPs_29182 0 0 1 3 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
3070 chr17 62223701 62223701 1 + G A LUSC 62223720 + 62223700 62223740 41 CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG CACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG < 41bp 1 0.56110430138081 1 0.504317760467529 experiment 0.877791397238381 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223720 chr17:62223701 . . 0 2 hm5C_associated_SNPs_29183 0 0 1 3 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
3071 chr17 62223701 62223701 1 + G A LUSC 62223720 + 62223700 62223740 41 CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG CACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG < 41bp 1 0.56110430138081 1 0.504317760467529 experiment 0.877791397238381 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223720 chr17:62223701 . . 0 2 hm5C_associated_SNPs_29183 0 0 1 3 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
3072 chr17 62223701 62223701 1 + G A LUSC 62223720 + 62223700 62223740 41 CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG CACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG < 41bp 1 0.56110430138081 1 0.504317760467529 experiment 0.877791397238381 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223720 chr17:62223701 . . 0 2 hm5C_associated_SNPs_29183 0 0 1 3 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
3073 chr12 7080158 7080158 1 + T G LUSC 7080174 + 7080154 7080194 41 ATGCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAAC ATGCGCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAAC < 41bp 1 0.232338758676347 1 0.0521124303340912 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080174 chr12:7080158 synonymous SNV . 0 5 hm5C_associated_SNPs_29220 0 0 1 1 7080134 7080158 mRNA hsa-miR-324-5p EMG1 miRanda miRanda
3074 chr12 7080158 7080158 1 + T G LUSC 7080176 + 7080156 7080196 41 GCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAA GCGCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAA < 41bp 1 0.158601003785642 1 0.0466203689575195 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080176 chr12:7080158 synonymous SNV . 0 3 hm5C_associated_SNPs_29221 0 0 1 1 7080134 7080158 mRNA hsa-miR-324-5p EMG1 miRanda miRanda
3075 chr12 7080158 7080158 1 + T G LUSC 7080177 + 7080157 7080197 41 CTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAAG CGCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAAG < 41bp 1 0.378850675470651 1 0.102057635784149 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080177 chr12:7080158 synonymous SNV . 0 2 hm5C_associated_SNPs_29222 0 0 1 1 7080134 7080158 mRNA hsa-miR-324-5p EMG1 miRanda miRanda
3076 chr7 116829385 116829385 1 + A G LUSC 116829387 + 116829367 116829407 41 TCCAACAGATATAAGCTTACCAAAGTCAGCAACAATATGCT TCCAACAGATATAAGCTTGCCAAAGTCAGCAACAATATGCT < 41bp 1 0.216324468636017 1 0.678213834762573 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ST7 ENSG00000004866 CDS Human protein_coding chr7:116829387 chr7:116829385 synonymous SNV . 0 19 hm5C_associated_SNPs_29233 0 0 1 1 116829375 116829392 mRNA hsa-miR-9 ST7OT3 miRanda miRanda
3077 chr16 29851519 29851519 1 + C T LUSC 29851532 + 29851512 29851552 41 TTTTCCTCCAGCCAGGAGAGCAGCTGGAACAAGGCATCCAG TTTTCCTTCAGCCAGGAGAGCAGCTGGAACAAGGCATCCAG < 41bp 1 0.472261958045977 1 0.438630402088165 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29851532 chr16:29851519 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_29257 0 0 1 1 29851506 29851528 mRNA hsa-miR-370 MVP miRanda miRanda
3078 chr6 32123555 32123555 1 + A G LUSC 32123537 + 32123517 32123557 41 TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTATG TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTGTG < 41bp 1 0.691291780664513 1 0.947803735733032 experiment 0.617416438670974 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control PPT2 ENSG00000221988;ENSG00000258388 CDS Human other chr6:32123537 chr6:32123555 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_29290 0 0 1 2 32123555 32123560 mRNA hsa-miR-26a PPT2 miRanda miRanda
3079 chr6 32123555 32123555 1 + A G LUSC 32123537 + 32123517 32123557 41 TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTATG TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTGTG < 41bp 1 0.691291780664513 1 0.947803735733032 experiment 0.617416438670974 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control PPT2 ENSG00000221988;ENSG00000258388 CDS Human other chr6:32123537 chr6:32123555 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_29290 0 0 1 2 32123544 32123560 mRNA hsa-miR-187 PPT2 miRanda miRanda
3080 chr3 20019841 20019841 1 + A G LUSC 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAGTCCTATGCAGATGACAATAGTTTATTATTCGTGGA < 41bp 1 0.508938689208916 1 0.139919310808182 experiment 0.982122621582168 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019841 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_29299 0 0 1 1 20019825 20019847 mRNA hsa-miR-136 RAB5A miRanda miRanda
3081 chr5 102472516 102472516 1 + A T LUSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGACTTGAATATGCAGTATCTCTTACAAGATAGG < 41bp 1 0.345679380180501 1 0.175760924816132 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472516 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_29319 0 0 1 2 102472493 102472516 mRNA hsa-miR-146a PPIP5K2 miRanda miRanda
3082 chr5 102472516 102472516 1 + A T LUSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGACTTGAATATGCAGTATCTCTTACAAGATAGG < 41bp 1 0.345679380180501 1 0.175760924816132 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472516 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_29319 0 0 1 2 102472494 102472516 mRNA hsa-miR-146b-5p PPIP5K2 miRanda miRanda
3083 chr17 48166608 48166608 1 + G T LUSC 48166618 + 48166598 48166638 41 CCAGCTGGCAGACTCGGGACCAATACTACTGACGTCCTCCC CCAGCTGGCATACTCGGGACCAATACTACTGACGTCCTCCC < 41bp 1 0.338581924155923 1 0.0740518271923065 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48166618 chr17:48166608 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_29323 0 0 1 4 48166590 48166612 mRNA hsa-miR-22 ITGA3 miRanda miRanda
3084 chr17 48166608 48166608 1 + G T LUSC 48166618 + 48166598 48166638 41 CCAGCTGGCAGACTCGGGACCAATACTACTGACGTCCTCCC CCAGCTGGCATACTCGGGACCAATACTACTGACGTCCTCCC < 41bp 1 0.338581924155923 1 0.0740518271923065 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48166618 chr17:48166608 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_29323 0 0 1 4 48166599 48166621 mRNA hsa-miR-133a ITGA3 miRanda miRanda
3085 chr17 48166608 48166608 1 + G T LUSC 48166618 + 48166598 48166638 41 CCAGCTGGCAGACTCGGGACCAATACTACTGACGTCCTCCC CCAGCTGGCATACTCGGGACCAATACTACTGACGTCCTCCC < 41bp 1 0.338581924155923 1 0.0740518271923065 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48166618 chr17:48166608 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_29323 0 0 1 4 48166599 48166621 mRNA hsa-miR-133b ITGA3 miRanda miRanda
3086 chr17 48166608 48166608 1 + G T LUSC 48166618 + 48166598 48166638 41 CCAGCTGGCAGACTCGGGACCAATACTACTGACGTCCTCCC CCAGCTGGCATACTCGGGACCAATACTACTGACGTCCTCCC < 41bp 1 0.338581924155923 1 0.0740518271923065 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48166618 chr17:48166608 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_29323 0 0 1 4 48166590 48166611 mRNA hsa-miR-346 ITGA3 miRanda miRanda
3087 chr17 15907564 15907564 1 + C G LUSC 15907552 + 15907532 15907572 41 TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCGCAGA TGAAATTTCCCTAAAGCTGGCCAGTATCTATGGTGCGCAGA < 41bp 1 0.128770825298269 1 0.0839388370513916 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15907552 chr17:15907564 nonsynonymous SNV 0.999 2 33 hm5C_associated_SNPs_29351 0 0 1 2 15907545 15907568 mRNA hsa-miR-103 TTC19 miRanda miRanda
3088 chr17 15907564 15907564 1 + C G LUSC 15907552 + 15907532 15907572 41 TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCGCAGA TGAAATTTCCCTAAAGCTGGCCAGTATCTATGGTGCGCAGA < 41bp 1 0.128770825298269 1 0.0839388370513916 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15907552 chr17:15907564 nonsynonymous SNV 0.999 2 33 hm5C_associated_SNPs_29351 0 0 1 2 15907545 15907568 mRNA hsa-miR-107 TTC19 miRanda miRanda
3089 chr5 68524045 68524045 1 + C A LUSC 68524030 + 68524010 68524050 41 TTTTTTTTTAATTTCAGTATCAGAAGCTTTGAGATCAGCAG TTTTTTTTTAATTTCAGTATCAGAAGCTTTGAGATAAGCAG < 41bp 1 0.753946562462758 1 0.524089276790619 experiment 0.492106875074484 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPS36 ENSG00000134056 CDS Human protein_coding chr5:68524030 chr5:68524045 stopgain 0.996 0 36 hm5C_associated_SNPs_29356 0 0 1 1 68524031 68524052 mRNA hsa-miR-370 MRPS36 miRanda miRanda
3090 chrX 73045732 73045732 1 - A C LUSC 73045745 - 73045725 73045765 41 GAGAACCTGGGACTGTTGAGCATGTTTAATACTTTCCTTGA GAGAACCTGGGACTGTTGAGCATGTTTAATACTGTCCTTGA < 41bp 1 0.143826887793987 1 0.473824560642242 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045745 chrX:73045732 . . 0 34 hm5C_associated_SNPs_29382 0 0 1 1 73045724 73045748 lncRNA hsa-miR-561-5p XIST miRanda starBase2
3091 chr9 132863443 132863443 1 + A C LUSC 132863429 + 132863409 132863449 41 CACCATTGCACTCATTGGCACTGGCTGGGCTTTCATTAAGC CACCATTGCACTCATTGGCACTGGCTGGGCTTTCCTTAAGC < 41bp 1 0.235802269197172 1 0.738452732563019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GPR107 ENSG00000148358 CDS Human protein_coding chr9:132863429 chr9:132863443 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_29413 0 0 1 1 132863433 132863453 mRNA hsa-miR-218 GPR107 miRanda miRanda
3092 chr1 112999476 112999476 1 + G A LUSC 112999456 + 112999436 112999476 41 CAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGG CAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGA < 41bp 1 0.153330793866055 1 0.536887228488922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999456 chr1:112999476 synonymous SNV . 0 41 hm5C_associated_SNPs_29431 0 0 0 1 112999470 112999491 mRNA hsa-miR-451 CTTNBP2NL miRanda miRanda
3093 chr1 112999476 112999476 1 + G A LUSC 112999460 + 112999440 112999480 41 TAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGGATCA TAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGAATCA < 41bp 1 0.378676301216783 1 0.0406734645366669 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999460 chr1:112999476 synonymous SNV . 0 37 hm5C_associated_SNPs_29432 0 0 0 1 112999470 112999491 mRNA hsa-miR-451 CTTNBP2NL miRanda miRanda
3094 chr1 112999476 112999476 1 + G A LUSC 112999467 + 112999447 112999487 41 CCTGGCTACCAGTCATCGTACCAAGTAGGGATCAACCAACG CCTGGCTACCAGTCATCGTACCAAGTAGGAATCAACCAACG < 41bp 1 0.281300620771559 1 0.432419538497925 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999467 chr1:112999476 synonymous SNV . 0 30 hm5C_associated_SNPs_29433 0 0 0 1 112999470 112999491 mRNA hsa-miR-451 CTTNBP2NL miRanda miRanda
3095 chr1 112999476 112999476 1 + G A LUSC 112999468 + 112999448 112999488 41 CTGGCTACCAGTCATCGTACCAAGTAGGGATCAACCAACGG CTGGCTACCAGTCATCGTACCAAGTAGGAATCAACCAACGG < 41bp 1 0.400299583227705 1 0.241982340812683 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999468 chr1:112999476 synonymous SNV . 0 29 hm5C_associated_SNPs_29434 0 0 0 1 112999470 112999491 mRNA hsa-miR-451 CTTNBP2NL miRanda miRanda
3096 chr14 102797996 102797996 1 + C T LUSC 102798016 + 102797996 102798036 41 CTGAACCAGAAAATGGAGCTCTTTTGCGATCAGAGAGATAC TTGAACCAGAAAATGGAGCTCTTTTGCGATCAGAGAGATAC < 41bp 1 0.0486725673012092 1 0.0455986857414246 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102798016 chr14:102797996 nonsynonymous SNV 0.303 2 1 hm5C_associated_SNPs_29476 0 0 1 1 102797991 102798014 mRNA hsa-miR-136 ZNF839 miRanda miRanda
3097 chr1 47838719 47838719 1 + C G LUSC 47838724 + 47838704 47838744 41 CCTTCAAGGATGGAACAAGACCATGGATGGGAAGGCAGATG CCTTCAAGGATGGAAGAAGACCATGGATGGGAAGGCAGATG < 41bp 1 0.461552895079547 1 0.0771947503089905 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838724 chr1:47838719 nonsynonymous SNV 0.996 1 16 hm5C_associated_SNPs_29487 0 0 1 2 47838705 47838728 mRNA hsa-miR-135a CMPK1 miRanda miRanda
3098 chr1 47838719 47838719 1 + C G LUSC 47838724 + 47838704 47838744 41 CCTTCAAGGATGGAACAAGACCATGGATGGGAAGGCAGATG CCTTCAAGGATGGAAGAAGACCATGGATGGGAAGGCAGATG < 41bp 1 0.461552895079547 1 0.0771947503089905 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838724 chr1:47838719 nonsynonymous SNV 0.996 1 16 hm5C_associated_SNPs_29487 0 0 1 2 47838705 47838728 mRNA hsa-miR-135b CMPK1 miRanda miRanda
3099 chr5 70818775 70818775 1 + A T LUSC 70818769 + 70818749 70818789 41 AAGAGCAATATCTCAATAAACTAACAAGGTAACATTTTATT AAGAGCAATATCTCAATAAACTAACATGGTAACATTTTATT < 41bp 1 0.104214515246169 1 0.0773312747478485 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BDP1 ENSG00000145734 CDS Human protein_coding chr5:70818769 chr5:70818775 nonsynonymous SNV 0.627 3 27 hm5C_associated_SNPs_29547 0 0 1 1 70818763 70818776 mRNA hsa-miR-542-3p BDP1 miRanda miRanda
3100 chr20 5163061 5163061 1 + C T LUSC 5163068 + 5163048 5163088 41 TACTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTCTAC TACTGAGTCTGGTTAAGAAGCATTATCGACTGCAGTTCTAC < 41bp 1 0.176488383913891 1 0.0352522730827332 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDS2 ENSG00000101290 CDS Human protein_coding chr20:5163068 chr20:5163061 synonymous SNV . 0 14 hm5C_associated_SNPs_29573 0 0 1 1 5163053 5163073 mRNA hsa-miR-155 CDS2 miRanda miRanda
3101 chr11 65273295 65273295 1 + A G LUSC 65273280 + 65273260 65273300 41 GTGACTAAAACCAACTTAAACCAGTAAGTGGAGAAATAACA GTGACTAAAACCAACTTAAACCAGTAAGTGGAGAAGTAACA < 41bp 1 0.518909219423036 1 0.158738791942596 experiment 0.962181561153927 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273280 chr11:65273295 . . 0 36 hm5C_associated_SNPs_29582 0 0 1 1 65273294 65273316 lncRNA hsa-miR-582-5p MALAT1 miRanda starBase2
3102 chrX 47424408 47424408 1 + G T LUSC 47424395 + 47424375 47424415 41 TGGCATCAGGTACGGAAGACCTTCTTCAGCCTGGCGTTCTG TGGCATCAGGTACGGAAGACCTTCTTCAGCCTGTCGTTCTG < 41bp 1 0.31014858940381 1 0.338581085205078 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARAF ENSG00000078061 CDS Human protein_coding chrX:47424395 chrX:47424408 nonsynonymous SNV 0.995 2 34 hm5C_associated_SNPs_29583 0 0 1 1 47424404 47424422 mRNA hsa-miR-224 ARAF miRanda miRanda
3103 chr8 48874090 48874090 1 + G T LUSC 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATTCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA < 41bp 1 0.131029166784271 1 0.085466057062149 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874090 nonsynonymous SNV 0.218 0 7 hm5C_associated_SNPs_29626 0 0 1 1 48874083 48874103 mRNA hsa-miR-143 MCM4 miRanda miRanda
3104 chr16 58043942 58043942 1 + G C LUSC 58043940 + 58043920 58043960 41 TGTTCCACCTCAGCCTGTCCCAGAGTGTGGTTCTGCGCCAC TGTTCCACCTCAGCCTGTCCCACAGTGTGGTTCTGCGCCAC < 41bp 1 0.797588024085499 1 0.461242437362671 experiment 0.404823951829002 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USB1 ENSG00000103005 CDS Human protein_coding chr16:58043940 chr16:58043942 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_29687 0 0 1 2 58043926 58043945 mRNA hsa-miR-330-5p C16orf57 miRanda miRanda
3105 chr16 58043942 58043942 1 + G C LUSC 58043940 + 58043920 58043960 41 TGTTCCACCTCAGCCTGTCCCAGAGTGTGGTTCTGCGCCAC TGTTCCACCTCAGCCTGTCCCACAGTGTGGTTCTGCGCCAC < 41bp 1 0.797588024085499 1 0.461242437362671 experiment 0.404823951829002 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USB1 ENSG00000103005 CDS Human protein_coding chr16:58043940 chr16:58043942 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_29687 0 0 1 2 58043926 58043945 mRNA hsa-miR-326 C16orf57 miRanda miRanda
3106 chr17 53852192 53852192 1 + C T LUSC 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCGATAACCCGGGTGGCCAAATTCTGTCCTGGCTCATT < 41bp 1 0.295172663968811 1 0.168204635381699 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852192 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_29692 0 0 1 1 53852176 53852197 mRNA hsa-miR-184 PCTP miRanda miRanda
3107 chr18 13095637 13095637 1 + G A LUSC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.171859936409406 1 0.0935557186603546 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095637 stopgain 0.016 1 5 hm5C_associated_SNPs_29698 0 0 1 8 13095636 13095658 mRNA hsa-miR-302a CEP192 miRanda miRanda
3108 chr18 13095637 13095637 1 + G A LUSC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.171859936409406 1 0.0935557186603546 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095637 stopgain 0.016 1 5 hm5C_associated_SNPs_29698 0 0 1 8 13095636 13095658 mRNA hsa-miR-302b CEP192 miRanda miRanda
3109 chr18 13095637 13095637 1 + G A LUSC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.171859936409406 1 0.0935557186603546 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095637 stopgain 0.016 1 5 hm5C_associated_SNPs_29698 0 0 1 8 13095636 13095658 mRNA hsa-miR-302c CEP192 miRanda miRanda
3110 chr18 13095637 13095637 1 + G A LUSC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.171859936409406 1 0.0935557186603546 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095637 stopgain 0.016 1 5 hm5C_associated_SNPs_29698 0 0 1 8 13095636 13095658 mRNA hsa-miR-302d CEP192 miRanda miRanda
3111 chr18 13095637 13095637 1 + G A LUSC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.171859936409406 1 0.0935557186603546 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095637 stopgain 0.016 1 5 hm5C_associated_SNPs_29698 0 0 1 8 13095637 13095658 mRNA hsa-miR-372 CEP192 miRanda miRanda
3112 chr18 13095637 13095637 1 + G A LUSC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.171859936409406 1 0.0935557186603546 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095637 stopgain 0.016 1 5 hm5C_associated_SNPs_29698 0 0 1 8 13095636 13095658 mRNA hsa-miR-373 CEP192 miRanda miRanda
3113 chr18 13095637 13095637 1 + G A LUSC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.171859936409406 1 0.0935557186603546 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095637 stopgain 0.016 1 5 hm5C_associated_SNPs_29698 0 0 1 8 13095637 13095658 mRNA hsa-miR-520c-3p CEP192 miRanda miRanda
3114 chr18 13095637 13095637 1 + G A LUSC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.171859936409406 1 0.0935557186603546 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095637 stopgain 0.016 1 5 hm5C_associated_SNPs_29698 0 0 1 8 13095637 13095658 mRNA hsa-miR-520d-3p CEP192 miRanda miRanda
3115 chr18 13095637 13095637 1 + G A LUSC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.562976169643423 1 0.1068414747715 experiment 0.874047660713154 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095637 stopgain 0.016 1 3 hm5C_associated_SNPs_29699 0 0 1 8 13095636 13095658 mRNA hsa-miR-302a CEP192 miRanda miRanda
3116 chr18 13095637 13095637 1 + G A LUSC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.562976169643423 1 0.1068414747715 experiment 0.874047660713154 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095637 stopgain 0.016 1 3 hm5C_associated_SNPs_29699 0 0 1 8 13095636 13095658 mRNA hsa-miR-302b CEP192 miRanda miRanda
3117 chr18 13095637 13095637 1 + G A LUSC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.562976169643423 1 0.1068414747715 experiment 0.874047660713154 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095637 stopgain 0.016 1 3 hm5C_associated_SNPs_29699 0 0 1 8 13095636 13095658 mRNA hsa-miR-302c CEP192 miRanda miRanda
3118 chr18 13095637 13095637 1 + G A LUSC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.562976169643423 1 0.1068414747715 experiment 0.874047660713154 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095637 stopgain 0.016 1 3 hm5C_associated_SNPs_29699 0 0 1 8 13095636 13095658 mRNA hsa-miR-302d CEP192 miRanda miRanda
3119 chr18 13095637 13095637 1 + G A LUSC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.562976169643423 1 0.1068414747715 experiment 0.874047660713154 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095637 stopgain 0.016 1 3 hm5C_associated_SNPs_29699 0 0 1 8 13095637 13095658 mRNA hsa-miR-372 CEP192 miRanda miRanda
3120 chr18 13095637 13095637 1 + G A LUSC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.562976169643423 1 0.1068414747715 experiment 0.874047660713154 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095637 stopgain 0.016 1 3 hm5C_associated_SNPs_29699 0 0 1 8 13095636 13095658 mRNA hsa-miR-373 CEP192 miRanda miRanda
3121 chr18 13095637 13095637 1 + G A LUSC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.562976169643423 1 0.1068414747715 experiment 0.874047660713154 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095637 stopgain 0.016 1 3 hm5C_associated_SNPs_29699 0 0 1 8 13095637 13095658 mRNA hsa-miR-520c-3p CEP192 miRanda miRanda
3122 chr18 13095637 13095637 1 + G A LUSC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.562976169643423 1 0.1068414747715 experiment 0.874047660713154 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095637 stopgain 0.016 1 3 hm5C_associated_SNPs_29699 0 0 1 8 13095637 13095658 mRNA hsa-miR-520d-3p CEP192 miRanda miRanda
3123 chr17 62223476 62223476 1 + G A LUSC 62223469 + 62223449 62223489 41 ATGACATTCCAATTAAAGCACGTGTTAGACTGCTGACGCGG ATGACATTCCAATTAAAGCACGTGTTAAACTGCTGACGCGG < 41bp 1 0.378123300395625 1 0.364908218383789 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223469 chr17:62223476 . . 0 28 hm5C_associated_SNPs_29718 0 0 1 1 62223457 62223479 mRNA hsa-miR-505 SNORD104 miRanda miRanda
3124 chr17 62223476 62223476 1 + G A LUSC 62223481 + 62223461 62223501 41 TTAAAGCACGTGTTAGACTGCTGACGCGGGTGATGCGAACT TTAAAGCACGTGTTAAACTGCTGACGCGGGTGATGCGAACT < 41bp 1 0.345871198165773 1 0.170592427253723 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223481 chr17:62223476 . . 0 16 hm5C_associated_SNPs_29719 0 0 1 1 62223457 62223479 mRNA hsa-miR-505 SNORD104 miRanda miRanda
3125 chr17 62223476 62223476 1 + G A LUSC 62223496 + 62223476 62223516 41 GACTGCTGACGCGGGTGATGCGAACTGGAGTCTGAGCCTGC AACTGCTGACGCGGGTGATGCGAACTGGAGTCTGAGCCTGC < 41bp 1 0.43697625190835 1 0.45729660987854 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223496 chr17:62223476 . . 0 1 hm5C_associated_SNPs_29720 0 0 1 1 62223457 62223479 mRNA hsa-miR-505 SNORD104 miRanda miRanda
3126 chr15 74335390 74335390 1 + A G LUSC 74335388 + 74335368 74335408 41 TGACCTCCAGCTGGAAGGCCCCAGCACCCTCAGGGTCCTGG TGACCTCCAGCTGGAAGGCCCCGGCACCCTCAGGGTCCTGG < 41bp 1 0.239987790627818 1 0.280622720718384 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74335388 chr15:74335390 nonsynonymous SNV 0.100 1 23 hm5C_associated_SNPs_29721 0 0 0 1 74335383 74335405 mRNA hsa-miR-504 PML miRanda miRanda
3127 chr6 32134290 32134290 1 + C G LUSC 32134276 + 32134256 32134296 41 TCCTCTGGCATGGACGCAGTCAGGGAGTCTGCTCCAAGCAG TCCTCTGGCATGGACGCAGTCAGGGAGTCTGCTCGAAGCAG < 41bp 1 0.737385749371329 1 0.836271643638611 experiment 0.525228501257343 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134276 chr6:32134290 synonymous SNV . 0 35 hm5C_associated_SNPs_29724 0 0 1 2 32134273 32134304 mRNA hsa-miR-199a-5p PPT2 miRanda miRanda
3128 chr6 32134290 32134290 1 + C G LUSC 32134276 + 32134256 32134296 41 TCCTCTGGCATGGACGCAGTCAGGGAGTCTGCTCCAAGCAG TCCTCTGGCATGGACGCAGTCAGGGAGTCTGCTCGAAGCAG < 41bp 1 0.737385749371329 1 0.836271643638611 experiment 0.525228501257343 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134276 chr6:32134290 synonymous SNV . 0 35 hm5C_associated_SNPs_29724 0 0 1 2 32134282 32134304 mRNA hsa-miR-199b-5p PPT2 miRanda miRanda
3129 chr3 186504021 186504021 1 + C G LUSC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATGAAAT < 41bp 1 0.151228274736849 1 0.204333871603012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504021 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_29824 0 0 1 6 186504015 186504036 mRNA hsa-miR-216a EIF4A2 miRanda miRanda
3130 chr3 186504021 186504021 1 + C G LUSC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATGAAAT < 41bp 1 0.151228274736849 1 0.204333871603012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504021 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_29824 0 0 1 6 186504012 186504032 mRNA hsa-miR-376c EIF4A2 miRanda miRanda
3131 chr3 186504021 186504021 1 + C G LUSC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATGAAAT < 41bp 1 0.151228274736849 1 0.204333871603012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504021 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_29824 0 0 1 6 186504005 186504032 mRNA hsa-miR-376a EIF4A2 miRanda miRanda
3132 chr3 186504021 186504021 1 + C G LUSC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATGAAAT < 41bp 1 0.151228274736849 1 0.204333871603012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504021 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_29824 0 0 1 6 186504010 186504032 mRNA hsa-miR-433 EIF4A2 miRanda miRanda
3133 chr3 186504021 186504021 1 + C G LUSC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATGAAAT < 41bp 1 0.151228274736849 1 0.204333871603012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504021 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_29824 0 0 1 6 186504012 186504032 mRNA hsa-miR-376b EIF4A2 miRanda miRanda
3134 chr3 186504021 186504021 1 + C G LUSC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATGAAAT < 41bp 1 0.151228274736849 1 0.204333871603012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504021 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_29824 0 0 1 6 186504015 186504036 mRNA hsa-miR-216b EIF4A2 miRanda miRanda
3135 chr8 107754456 107754456 1 + G C LUSC 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTCGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC < 41bp 1 0.0737306699619948 1 0.0759952664375305 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754456 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_29831 0 0 0 1 107754455 107754476 mRNA hsa-miR-24 OXR1 miRanda miRanda
3136 chr8 107754456 107754456 1 + G C LUSC 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TCGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT < 41bp 1 0.163032190060178 1 0.0948624610900879 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754456 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_29832 0 0 0 1 107754455 107754476 mRNA hsa-miR-24 OXR1 miRanda miRanda
3137 chr19 19035055 19035055 1 + C G LUSC 19035045 + 19035025 19035065 41 CACATCCTTCCCGCCAGGACCTGCCAGATTCTGTGCATGAT CACATCCTTCCCGCCAGGACCTGCCAGATTGTGTGCATGAT < 41bp 1 0.184414267022263 1 0.105171382427216 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX49 ENSG00000105671 CDS Human protein_coding chr19:19035045 chr19:19035055 nonsynonymous SNV 0.997 1 31 hm5C_associated_SNPs_29857 0 0 1 2 19035046 19035071 mRNA hsa-miR-103 DDX49 miRanda miRanda
3138 chr19 19035055 19035055 1 + C G LUSC 19035045 + 19035025 19035065 41 CACATCCTTCCCGCCAGGACCTGCCAGATTCTGTGCATGAT CACATCCTTCCCGCCAGGACCTGCCAGATTGTGTGCATGAT < 41bp 1 0.184414267022263 1 0.105171382427216 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX49 ENSG00000105671 CDS Human protein_coding chr19:19035045 chr19:19035055 nonsynonymous SNV 0.997 1 31 hm5C_associated_SNPs_29857 0 0 1 2 19035046 19035071 mRNA hsa-miR-107 DDX49 miRanda miRanda
3139 chr4 39482348 39482348 1 + G A LUSC 39482364 + 39482344 39482384 41 TTGAGAAAACCGTCTGGTCACAGCCTGGTCGTCAGATTCTA TTGAAAAAACCGTCTGGTCACAGCCTGGTCGTCAGATTCTA < 41bp 1 0.365645643567479 1 0.0442051887512207 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482364 chr4:39482348 . . 0 5 hm5C_associated_SNPs_29868 0 0 0 1 39482343 39482365 mRNA hsa-miR-542-3p LOC401127 miRanda miRanda
3140 chr19 42814479 42814479 1 + G A LUSC 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTAATCAAGTCCCAGAGCA < 41bp 1 0.254487678226166 1 0.105585157871246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814479 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_29876 0 0 0 4 42814473 42814492 mRNA hsa-miR-378 PRR19 miRanda miRanda
3141 chr19 42814479 42814479 1 + G A LUSC 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTAATCAAGTCCCAGAGCA < 41bp 1 0.254487678226166 1 0.105585157871246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814479 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_29876 0 0 0 4 42814473 42814494 mRNA hsa-miR-330-5p PRR19 miRanda miRanda
3142 chr19 42814479 42814479 1 + G A LUSC 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTAATCAAGTCCCAGAGCA < 41bp 1 0.254487678226166 1 0.105585157871246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814479 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_29876 0 0 0 4 42814476 42814494 mRNA hsa-miR-326 PRR19 miRanda miRanda
3143 chr19 42814479 42814479 1 + G A LUSC 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTAATCAAGTCCCAGAGCA < 41bp 1 0.254487678226166 1 0.105585157871246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814479 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_29876 0 0 0 4 42814472 42814492 mRNA hsa-miR-422a PRR19 miRanda miRanda
3144 chrX 73046593 73046593 1 - A T LUSC 73046585 - 73046565 73046605 41 TACCTAGATGGATAGAGGACCCAAGCGAAAAAGGTATCTCA TACCTAGATGGAAAGAGGACCCAAGCGAAAAAGGTATCTCA < 41bp 1 0.0838294849639049 1 0.187224388122559 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046585 chrX:73046593 . . 0 13 hm5C_associated_SNPs_29905 0 0 1 3 73046585 73046606 lncRNA hsa-miR-3909 XIST miRanda starBase2
3145 chrX 73046593 73046593 1 - A T LUSC 73046585 - 73046565 73046605 41 TACCTAGATGGATAGAGGACCCAAGCGAAAAAGGTATCTCA TACCTAGATGGAAAGAGGACCCAAGCGAAAAAGGTATCTCA < 41bp 1 0.0838294849639049 1 0.187224388122559 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046585 chrX:73046593 . . 0 13 hm5C_associated_SNPs_29905 0 0 1 3 73046585 73046601 lncRNA hsa-miR-6852-3p XIST miRanda starBase2
3146 chrX 73046593 73046593 1 - A T LUSC 73046585 - 73046565 73046605 41 TACCTAGATGGATAGAGGACCCAAGCGAAAAAGGTATCTCA TACCTAGATGGAAAGAGGACCCAAGCGAAAAAGGTATCTCA < 41bp 1 0.0838294849639049 1 0.187224388122559 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046585 chrX:73046593 . . 0 13 hm5C_associated_SNPs_29905 0 0 1 3 73046592 73046614 lncRNA hsa-miR-7151-5p XIST miRanda starBase2
3147 chrX 73046593 73046593 1 - A T LUSC 73046606 - 73046586 73046626 41 GAAGGCCCCTGTCACAAAGCCTACCTAGATGGATAGAGGAC GAAGGCCCCTGTCACAAAGCCTACCTAGATGGAAAGAGGAC < 41bp 1 0.0921494328342301 1 0.0769659578800201 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046606 chrX:73046593 . . 0 34 hm5C_associated_SNPs_29906 0 0 1 3 73046585 73046606 lncRNA hsa-miR-3909 XIST miRanda starBase2
3148 chrX 73046593 73046593 1 - A T LUSC 73046606 - 73046586 73046626 41 GAAGGCCCCTGTCACAAAGCCTACCTAGATGGATAGAGGAC GAAGGCCCCTGTCACAAAGCCTACCTAGATGGAAAGAGGAC < 41bp 1 0.0921494328342301 1 0.0769659578800201 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046606 chrX:73046593 . . 0 34 hm5C_associated_SNPs_29906 0 0 1 3 73046585 73046601 lncRNA hsa-miR-6852-3p XIST miRanda starBase2
3149 chrX 73046593 73046593 1 - A T LUSC 73046606 - 73046586 73046626 41 GAAGGCCCCTGTCACAAAGCCTACCTAGATGGATAGAGGAC GAAGGCCCCTGTCACAAAGCCTACCTAGATGGAAAGAGGAC < 41bp 1 0.0921494328342301 1 0.0769659578800201 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046606 chrX:73046593 . . 0 34 hm5C_associated_SNPs_29906 0 0 1 3 73046592 73046614 lncRNA hsa-miR-7151-5p XIST miRanda starBase2
3150 chrX 73046593 73046593 1 - A T LUSC 73046612 - 73046592 73046632 41 AGGATGGAAGGCCCCTGTCACAAAGCCTACCTAGATGGATA AGGATGGAAGGCCCCTGTCACAAAGCCTACCTAGATGGAAA < 41bp 1 0.257754968157019 1 0.425182580947876 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046612 chrX:73046593 . . 0 40 hm5C_associated_SNPs_29907 0 0 1 3 73046585 73046606 lncRNA hsa-miR-3909 XIST miRanda starBase2
3151 chrX 73046593 73046593 1 - A T LUSC 73046612 - 73046592 73046632 41 AGGATGGAAGGCCCCTGTCACAAAGCCTACCTAGATGGATA AGGATGGAAGGCCCCTGTCACAAAGCCTACCTAGATGGAAA < 41bp 1 0.257754968157019 1 0.425182580947876 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046612 chrX:73046593 . . 0 40 hm5C_associated_SNPs_29907 0 0 1 3 73046585 73046601 lncRNA hsa-miR-6852-3p XIST miRanda starBase2
3152 chrX 73046593 73046593 1 - A T LUSC 73046612 - 73046592 73046632 41 AGGATGGAAGGCCCCTGTCACAAAGCCTACCTAGATGGATA AGGATGGAAGGCCCCTGTCACAAAGCCTACCTAGATGGAAA < 41bp 1 0.257754968157019 1 0.425182580947876 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046612 chrX:73046593 . . 0 40 hm5C_associated_SNPs_29907 0 0 1 3 73046592 73046614 lncRNA hsa-miR-7151-5p XIST miRanda starBase2
3153 chr8 48874091 48874091 1 + C A LUSC 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATGACAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA < 41bp 1 0.17647431861161 1 0.0679217278957367 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874091 nonsynonymous SNV 0.141 0 8 hm5C_associated_SNPs_29910 0 0 1 1 48874083 48874103 mRNA hsa-miR-143 MCM4 miRanda miRanda
3154 chr16 71956497 71956497 1 + G C LUSC 71956504 + 71956484 71956524 41 AGTTGGTGGACCTGATGGAACGGTGCCAATGCCCATGCCCA AGTTGGTGGACCTCATGGAACGGTGCCAATGCCCATGCCCA < 41bp 1 0.646629558301732 1 0.306204438209534 experiment 0.706740883396535 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IST1 ENSG00000182149 CDS Human protein_coding chr16:71956504 chr16:71956497 nonsynonymous SNV 0.997 2 14 hm5C_associated_SNPs_29929 0 0 1 2 71956491 71956513 mRNA hsa-miR-96 KIAA0174 miRanda miRanda
3155 chr16 71956497 71956497 1 + G C LUSC 71956504 + 71956484 71956524 41 AGTTGGTGGACCTGATGGAACGGTGCCAATGCCCATGCCCA AGTTGGTGGACCTCATGGAACGGTGCCAATGCCCATGCCCA < 41bp 1 0.646629558301732 1 0.306204438209534 experiment 0.706740883396535 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IST1 ENSG00000182149 CDS Human protein_coding chr16:71956504 chr16:71956497 nonsynonymous SNV 0.997 2 14 hm5C_associated_SNPs_29929 0 0 1 2 71956492 71956513 mRNA hsa-miR-1271 KIAA0174 miRanda miRanda
3156 chr5 6651984 6651984 1 + G C LUSC 6651967 + 6651947 6651987 41 TTCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGG TTCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGCAGG < 41bp 1 0.247099087464026 1 0.137109309434891 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651967 chr5:6651984 nonsynonymous SNV 0.862 1 38 hm5C_associated_SNPs_29985 0 0 1 2 6651973 6651997 mRNA hsa-miR-135a SRD5A1 miRanda miRanda
3157 chr5 6651984 6651984 1 + G C LUSC 6651967 + 6651947 6651987 41 TTCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGG TTCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGCAGG < 41bp 1 0.247099087464026 1 0.137109309434891 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651967 chr5:6651984 nonsynonymous SNV 0.862 1 38 hm5C_associated_SNPs_29985 0 0 1 2 6651973 6651997 mRNA hsa-miR-135b SRD5A1 miRanda miRanda
3158 chr5 6651984 6651984 1 + G C LUSC 6651968 + 6651948 6651988 41 TCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGGA TCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGCAGGA < 41bp 1 0.0458020601177971 1 0.293656826019287 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651968 chr5:6651984 nonsynonymous SNV 0.862 1 37 hm5C_associated_SNPs_29986 0 0 1 2 6651973 6651997 mRNA hsa-miR-135a SRD5A1 miRanda miRanda
3159 chr5 6651984 6651984 1 + G C LUSC 6651968 + 6651948 6651988 41 TCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGGA TCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGCAGGA < 41bp 1 0.0458020601177971 1 0.293656826019287 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651968 chr5:6651984 nonsynonymous SNV 0.862 1 37 hm5C_associated_SNPs_29986 0 0 1 2 6651973 6651997 mRNA hsa-miR-135b SRD5A1 miRanda miRanda
3160 chr5 6651984 6651984 1 + G C LUSC 6651969 + 6651949 6651989 41 CCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGGAA CCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGCAGGAA < 41bp 1 0.0644733303902616 1 0.145225822925568 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651969 chr5:6651984 nonsynonymous SNV 0.862 1 36 hm5C_associated_SNPs_29987 0 0 1 2 6651973 6651997 mRNA hsa-miR-135a SRD5A1 miRanda miRanda
3161 chr5 6651984 6651984 1 + G C LUSC 6651969 + 6651949 6651989 41 CCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGGAA CCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGCAGGAA < 41bp 1 0.0644733303902616 1 0.145225822925568 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651969 chr5:6651984 nonsynonymous SNV 0.862 1 36 hm5C_associated_SNPs_29987 0 0 1 2 6651973 6651997 mRNA hsa-miR-135b SRD5A1 miRanda miRanda
3162 chr11 65267905 65267905 1 + G A LUSC 65267898 + 65267878 65267918 41 CAGAAGTGGATTCAGTGAATCTAGGAAGACAGCAGCAGACA CAGAAGTGGATTCAGTGAATCTAGGAAAACAGCAGCAGACA < 41bp 1 0.775482705575489 1 0.483038514852524 experiment 0.449034588849023 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267898 chr11:65267905 . . 0 28 hm5C_associated_SNPs_29989 0 0 1 1 65267882 65267905 lncRNA hsa-miR-384 MALAT1 miRanda starBase2
3163 chr11 65267905 65267905 1 + G A LUSC 65267924 + 65267904 65267944 41 AGACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGATGA AAACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGATGA < 41bp 1 0.648491687785533 1 0.826244592666626 experiment 0.703016624428934 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267924 chr11:65267905 . . 0 2 hm5C_associated_SNPs_29990 0 0 1 1 65267882 65267905 lncRNA hsa-miR-384 MALAT1 miRanda starBase2
3164 chr11 65268000 65268000 1 + G C LUSC 65268011 + 65267991 65268031 41 ATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA ATAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA < 41bp 1 0.311400660115329 1 0.276459991931915 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268011 chr11:65268000 . . 0 10 hm5C_associated_SNPs_29991 0 0 1 11 65267993 65268015 lncRNA hsa-miR-149-5p MALAT1 miRanda starBase2
3165 chr11 65268000 65268000 1 + G C LUSC 65268011 + 65267991 65268031 41 ATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA ATAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA < 41bp 1 0.311400660115329 1 0.276459991931915 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268011 chr11:65268000 . . 0 10 hm5C_associated_SNPs_29991 0 0 1 11 65267987 65268009 lncRNA hsa-miR-3690 MALAT1 miRanda starBase2
3166 chr11 65268000 65268000 1 + G C LUSC 65268011 + 65267991 65268031 41 ATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA ATAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA < 41bp 1 0.311400660115329 1 0.276459991931915 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268011 chr11:65268000 . . 0 10 hm5C_associated_SNPs_29991 0 0 1 11 65267987 65268008 lncRNA hsa-miR-378a-3p MALAT1 miRanda starBase2
3167 chr11 65268000 65268000 1 + G C LUSC 65268011 + 65267991 65268031 41 ATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA ATAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA < 41bp 1 0.311400660115329 1 0.276459991931915 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268011 chr11:65268000 . . 0 10 hm5C_associated_SNPs_29991 0 0 1 11 65267990 65268008 lncRNA hsa-miR-378b MALAT1 miRanda starBase2
3168 chr11 65268000 65268000 1 + G C LUSC 65268011 + 65267991 65268031 41 ATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA ATAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA < 41bp 1 0.311400660115329 1 0.276459991931915 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268011 chr11:65268000 . . 0 10 hm5C_associated_SNPs_29991 0 0 1 11 65267984 65268008 lncRNA hsa-miR-378c MALAT1 miRanda starBase2
3169 chr11 65268000 65268000 1 + G C LUSC 65268011 + 65267991 65268031 41 ATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA ATAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA < 41bp 1 0.311400660115329 1 0.276459991931915 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268011 chr11:65268000 . . 0 10 hm5C_associated_SNPs_29991 0 0 1 11 65267989 65268008 lncRNA hsa-miR-378d MALAT1 miRanda starBase2
3170 chr11 65268000 65268000 1 + G C LUSC 65268011 + 65267991 65268031 41 ATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA ATAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA < 41bp 1 0.311400660115329 1 0.276459991931915 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268011 chr11:65268000 . . 0 10 hm5C_associated_SNPs_29991 0 0 1 11 65267990 65268008 lncRNA hsa-miR-378e MALAT1 miRanda starBase2
3171 chr11 65268000 65268000 1 + G C LUSC 65268011 + 65267991 65268031 41 ATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA ATAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA < 41bp 1 0.311400660115329 1 0.276459991931915 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268011 chr11:65268000 . . 0 10 hm5C_associated_SNPs_29991 0 0 1 11 65267989 65268008 lncRNA hsa-miR-378f MALAT1 miRanda starBase2
3172 chr11 65268000 65268000 1 + G C LUSC 65268011 + 65267991 65268031 41 ATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA ATAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA < 41bp 1 0.311400660115329 1 0.276459991931915 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268011 chr11:65268000 . . 0 10 hm5C_associated_SNPs_29991 0 0 1 11 65267989 65268008 lncRNA hsa-miR-378h MALAT1 miRanda starBase2
3173 chr11 65268000 65268000 1 + G C LUSC 65268011 + 65267991 65268031 41 ATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA ATAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA < 41bp 1 0.311400660115329 1 0.276459991931915 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268011 chr11:65268000 . . 0 10 hm5C_associated_SNPs_29991 0 0 1 11 65267988 65268008 lncRNA hsa-miR-378i MALAT1 miRanda starBase2
3174 chr11 65268000 65268000 1 + G C LUSC 65268011 + 65267991 65268031 41 ATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA ATAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA < 41bp 1 0.311400660115329 1 0.276459991931915 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268011 chr11:65268000 . . 0 10 hm5C_associated_SNPs_29991 0 0 1 11 65267987 65268008 lncRNA hsa-miR-422a MALAT1 miRanda starBase2
3175 chr11 65268000 65268000 1 + G C LUSC 65268012 + 65267992 65268032 41 TAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA TAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA < 41bp 1 0.355771876350157 1 0.33296012878418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268012 chr11:65268000 . . 0 9 hm5C_associated_SNPs_29992 0 0 1 11 65267993 65268015 lncRNA hsa-miR-149-5p MALAT1 miRanda starBase2
3176 chr11 65268000 65268000 1 + G C LUSC 65268012 + 65267992 65268032 41 TAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA TAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA < 41bp 1 0.355771876350157 1 0.33296012878418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268012 chr11:65268000 . . 0 9 hm5C_associated_SNPs_29992 0 0 1 11 65267987 65268009 lncRNA hsa-miR-3690 MALAT1 miRanda starBase2
3177 chr11 65268000 65268000 1 + G C LUSC 65268012 + 65267992 65268032 41 TAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA TAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA < 41bp 1 0.355771876350157 1 0.33296012878418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268012 chr11:65268000 . . 0 9 hm5C_associated_SNPs_29992 0 0 1 11 65267987 65268008 lncRNA hsa-miR-378a-3p MALAT1 miRanda starBase2
3178 chr11 65268000 65268000 1 + G C LUSC 65268012 + 65267992 65268032 41 TAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA TAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA < 41bp 1 0.355771876350157 1 0.33296012878418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268012 chr11:65268000 . . 0 9 hm5C_associated_SNPs_29992 0 0 1 11 65267990 65268008 lncRNA hsa-miR-378b MALAT1 miRanda starBase2
3179 chr11 65268000 65268000 1 + G C LUSC 65268012 + 65267992 65268032 41 TAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA TAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA < 41bp 1 0.355771876350157 1 0.33296012878418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268012 chr11:65268000 . . 0 9 hm5C_associated_SNPs_29992 0 0 1 11 65267984 65268008 lncRNA hsa-miR-378c MALAT1 miRanda starBase2
3180 chr11 65268000 65268000 1 + G C LUSC 65268012 + 65267992 65268032 41 TAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA TAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA < 41bp 1 0.355771876350157 1 0.33296012878418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268012 chr11:65268000 . . 0 9 hm5C_associated_SNPs_29992 0 0 1 11 65267989 65268008 lncRNA hsa-miR-378d MALAT1 miRanda starBase2
3181 chr11 65268000 65268000 1 + G C LUSC 65268012 + 65267992 65268032 41 TAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA TAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA < 41bp 1 0.355771876350157 1 0.33296012878418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268012 chr11:65268000 . . 0 9 hm5C_associated_SNPs_29992 0 0 1 11 65267990 65268008 lncRNA hsa-miR-378e MALAT1 miRanda starBase2
3182 chr11 65268000 65268000 1 + G C LUSC 65268012 + 65267992 65268032 41 TAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA TAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA < 41bp 1 0.355771876350157 1 0.33296012878418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268012 chr11:65268000 . . 0 9 hm5C_associated_SNPs_29992 0 0 1 11 65267989 65268008 lncRNA hsa-miR-378f MALAT1 miRanda starBase2
3183 chr11 65268000 65268000 1 + G C LUSC 65268012 + 65267992 65268032 41 TAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA TAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA < 41bp 1 0.355771876350157 1 0.33296012878418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268012 chr11:65268000 . . 0 9 hm5C_associated_SNPs_29992 0 0 1 11 65267989 65268008 lncRNA hsa-miR-378h MALAT1 miRanda starBase2
3184 chr11 65268000 65268000 1 + G C LUSC 65268012 + 65267992 65268032 41 TAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA TAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA < 41bp 1 0.355771876350157 1 0.33296012878418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268012 chr11:65268000 . . 0 9 hm5C_associated_SNPs_29992 0 0 1 11 65267988 65268008 lncRNA hsa-miR-378i MALAT1 miRanda starBase2
3185 chr11 65268000 65268000 1 + G C LUSC 65268012 + 65267992 65268032 41 TAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA TAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA < 41bp 1 0.355771876350157 1 0.33296012878418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268012 chr11:65268000 . . 0 9 hm5C_associated_SNPs_29992 0 0 1 11 65267987 65268008 lncRNA hsa-miR-422a MALAT1 miRanda starBase2
3186 chrX 73046073 73046073 1 - C A LUSC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.300835902111627 1 0.812818765640259 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046073 . . 0 17 hm5C_associated_SNPs_30030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518d-5p XIST miRanda starBase2
3187 chrX 73046073 73046073 1 - C A LUSC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.300835902111627 1 0.812818765640259 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046073 . . 0 17 hm5C_associated_SNPs_30030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518e-5p XIST miRanda starBase2
3188 chrX 73046073 73046073 1 - C A LUSC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.300835902111627 1 0.812818765640259 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046073 . . 0 17 hm5C_associated_SNPs_30030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518f-5p XIST miRanda starBase2
3189 chrX 73046073 73046073 1 - C A LUSC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.300835902111627 1 0.812818765640259 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046073 . . 0 17 hm5C_associated_SNPs_30030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519a-5p XIST miRanda starBase2
3190 chrX 73046073 73046073 1 - C A LUSC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.300835902111627 1 0.812818765640259 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046073 . . 0 17 hm5C_associated_SNPs_30030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519b-5p XIST miRanda starBase2
3191 chrX 73046073 73046073 1 - C A LUSC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.300835902111627 1 0.812818765640259 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046073 . . 0 17 hm5C_associated_SNPs_30030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519c-5p XIST miRanda starBase2
3192 chrX 73046073 73046073 1 - C A LUSC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.300835902111627 1 0.812818765640259 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046073 . . 0 17 hm5C_associated_SNPs_30030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-520c-5p XIST miRanda starBase2
3193 chrX 73046073 73046073 1 - C A LUSC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.300835902111627 1 0.812818765640259 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046073 . . 0 17 hm5C_associated_SNPs_30030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-522-5p XIST miRanda starBase2
3194 chrX 73046073 73046073 1 - C A LUSC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.300835902111627 1 0.812818765640259 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046073 . . 0 17 hm5C_associated_SNPs_30030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-523-5p XIST miRanda starBase2
3195 chrX 73046073 73046073 1 - C A LUSC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.300835902111627 1 0.812818765640259 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046073 . . 0 17 hm5C_associated_SNPs_30030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-526a XIST miRanda starBase2
3196 chrX 73046073 73046073 1 - C A LUSC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATG < 41bp 1 0.079236665546873 1 0.0560686588287354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046073 . . 0 23 hm5C_associated_SNPs_30031 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518d-5p XIST miRanda starBase2
3197 chrX 73046073 73046073 1 - C A LUSC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATG < 41bp 1 0.079236665546873 1 0.0560686588287354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046073 . . 0 23 hm5C_associated_SNPs_30031 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518e-5p XIST miRanda starBase2
3198 chrX 73046073 73046073 1 - C A LUSC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATG < 41bp 1 0.079236665546873 1 0.0560686588287354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046073 . . 0 23 hm5C_associated_SNPs_30031 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518f-5p XIST miRanda starBase2
3199 chrX 73046073 73046073 1 - C A LUSC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATG < 41bp 1 0.079236665546873 1 0.0560686588287354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046073 . . 0 23 hm5C_associated_SNPs_30031 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519a-5p XIST miRanda starBase2
3200 chrX 73046073 73046073 1 - C A LUSC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATG < 41bp 1 0.079236665546873 1 0.0560686588287354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046073 . . 0 23 hm5C_associated_SNPs_30031 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519b-5p XIST miRanda starBase2
3201 chrX 73046073 73046073 1 - C A LUSC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATG < 41bp 1 0.079236665546873 1 0.0560686588287354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046073 . . 0 23 hm5C_associated_SNPs_30031 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519c-5p XIST miRanda starBase2
3202 chrX 73046073 73046073 1 - C A LUSC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATG < 41bp 1 0.079236665546873 1 0.0560686588287354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046073 . . 0 23 hm5C_associated_SNPs_30031 0 0 1 10 73046062 73046085 lncRNA hsa-miR-520c-5p XIST miRanda starBase2
3203 chrX 73046073 73046073 1 - C A LUSC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATG < 41bp 1 0.079236665546873 1 0.0560686588287354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046073 . . 0 23 hm5C_associated_SNPs_30031 0 0 1 10 73046062 73046085 lncRNA hsa-miR-522-5p XIST miRanda starBase2
3204 chrX 73046073 73046073 1 - C A LUSC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATG < 41bp 1 0.079236665546873 1 0.0560686588287354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046073 . . 0 23 hm5C_associated_SNPs_30031 0 0 1 10 73046062 73046085 lncRNA hsa-miR-523-5p XIST miRanda starBase2
3205 chrX 73046073 73046073 1 - C A LUSC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATG < 41bp 1 0.079236665546873 1 0.0560686588287354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046073 . . 0 23 hm5C_associated_SNPs_30031 0 0 1 10 73046062 73046085 lncRNA hsa-miR-526a XIST miRanda starBase2
3206 chrX 73046073 73046073 1 - C A LUSC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAAT < 41bp 1 0.0312786087530922 1 0.0722248554229736 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046073 . . 0 24 hm5C_associated_SNPs_30032 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518d-5p XIST miRanda starBase2
3207 chrX 73046073 73046073 1 - C A LUSC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAAT < 41bp 1 0.0312786087530922 1 0.0722248554229736 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046073 . . 0 24 hm5C_associated_SNPs_30032 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518e-5p XIST miRanda starBase2
3208 chrX 73046073 73046073 1 - C A LUSC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAAT < 41bp 1 0.0312786087530922 1 0.0722248554229736 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046073 . . 0 24 hm5C_associated_SNPs_30032 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518f-5p XIST miRanda starBase2
3209 chrX 73046073 73046073 1 - C A LUSC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAAT < 41bp 1 0.0312786087530922 1 0.0722248554229736 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046073 . . 0 24 hm5C_associated_SNPs_30032 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519a-5p XIST miRanda starBase2
3210 chrX 73046073 73046073 1 - C A LUSC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAAT < 41bp 1 0.0312786087530922 1 0.0722248554229736 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046073 . . 0 24 hm5C_associated_SNPs_30032 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519b-5p XIST miRanda starBase2
3211 chrX 73046073 73046073 1 - C A LUSC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAAT < 41bp 1 0.0312786087530922 1 0.0722248554229736 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046073 . . 0 24 hm5C_associated_SNPs_30032 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519c-5p XIST miRanda starBase2
3212 chrX 73046073 73046073 1 - C A LUSC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAAT < 41bp 1 0.0312786087530922 1 0.0722248554229736 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046073 . . 0 24 hm5C_associated_SNPs_30032 0 0 1 10 73046062 73046085 lncRNA hsa-miR-520c-5p XIST miRanda starBase2
3213 chrX 73046073 73046073 1 - C A LUSC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAAT < 41bp 1 0.0312786087530922 1 0.0722248554229736 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046073 . . 0 24 hm5C_associated_SNPs_30032 0 0 1 10 73046062 73046085 lncRNA hsa-miR-522-5p XIST miRanda starBase2
3214 chrX 73046073 73046073 1 - C A LUSC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAAT < 41bp 1 0.0312786087530922 1 0.0722248554229736 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046073 . . 0 24 hm5C_associated_SNPs_30032 0 0 1 10 73046062 73046085 lncRNA hsa-miR-523-5p XIST miRanda starBase2
3215 chrX 73046073 73046073 1 - C A LUSC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAAT < 41bp 1 0.0312786087530922 1 0.0722248554229736 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046073 . . 0 24 hm5C_associated_SNPs_30032 0 0 1 10 73046062 73046085 lncRNA hsa-miR-526a XIST miRanda starBase2
3216 chr7 142457357 142457357 1 + A T LUSC 142457345 + 142457325 142457365 41 ACTCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTG ACTCTACCACCATGAATCCACTCCTGATCCTTTCCTTTGTG < 41bp 1 0.255805525734731 1 0.0811909735202789 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457345 chr7:142457357 nonsynonymous SNV 0.007 1 33 hm5C_associated_SNPs_30050 0 0 0 2 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3217 chr7 142457357 142457357 1 + A T LUSC 142457345 + 142457325 142457365 41 ACTCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTG ACTCTACCACCATGAATCCACTCCTGATCCTTTCCTTTGTG < 41bp 1 0.255805525734731 1 0.0811909735202789 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457345 chr7:142457357 nonsynonymous SNV 0.007 1 33 hm5C_associated_SNPs_30050 0 0 0 2 142457357 142457375 mRNA hsa-miR-335 PRSS2 miRanda miRanda
3218 chr7 142457357 142457357 1 + A T LUSC 142457347 + 142457327 142457367 41 TCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGC TCTACCACCATGAATCCACTCCTGATCCTTTCCTTTGTGGC < 41bp 1 0.204979556084177 1 0.197391301393509 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457347 chr7:142457357 nonsynonymous SNV 0.007 1 31 hm5C_associated_SNPs_30051 0 0 0 2 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3219 chr7 142457357 142457357 1 + A T LUSC 142457347 + 142457327 142457367 41 TCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGC TCTACCACCATGAATCCACTCCTGATCCTTTCCTTTGTGGC < 41bp 1 0.204979556084177 1 0.197391301393509 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457347 chr7:142457357 nonsynonymous SNV 0.007 1 31 hm5C_associated_SNPs_30051 0 0 0 2 142457357 142457375 mRNA hsa-miR-335 PRSS2 miRanda miRanda
3220 chr7 142457357 142457357 1 + A T LUSC 142457348 + 142457328 142457368 41 CTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGCA CTACCACCATGAATCCACTCCTGATCCTTTCCTTTGTGGCA < 41bp 1 0.100145380202614 1 0.229956537485123 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457348 chr7:142457357 nonsynonymous SNV 0.007 1 30 hm5C_associated_SNPs_30052 0 0 0 2 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3221 chr7 142457357 142457357 1 + A T LUSC 142457348 + 142457328 142457368 41 CTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGCA CTACCACCATGAATCCACTCCTGATCCTTTCCTTTGTGGCA < 41bp 1 0.100145380202614 1 0.229956537485123 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457348 chr7:142457357 nonsynonymous SNV 0.007 1 30 hm5C_associated_SNPs_30052 0 0 0 2 142457357 142457375 mRNA hsa-miR-335 PRSS2 miRanda miRanda
3222 chr7 142457357 142457357 1 + A T LUSC 142457353 + 142457333 142457373 41 ACCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGC ACCATGAATCCACTCCTGATCCTTTCCTTTGTGGCAGCTGC < 41bp 1 0.0196621782102771 1 0.0446183979511261 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457353 chr7:142457357 nonsynonymous SNV 0.007 1 25 hm5C_associated_SNPs_30053 0 0 0 2 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3223 chr7 142457357 142457357 1 + A T LUSC 142457353 + 142457333 142457373 41 ACCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGC ACCATGAATCCACTCCTGATCCTTTCCTTTGTGGCAGCTGC < 41bp 1 0.0196621782102771 1 0.0446183979511261 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457353 chr7:142457357 nonsynonymous SNV 0.007 1 25 hm5C_associated_SNPs_30053 0 0 0 2 142457357 142457375 mRNA hsa-miR-335 PRSS2 miRanda miRanda
3224 chr7 142457357 142457357 1 + A T LUSC 142457354 + 142457334 142457374 41 CCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCT CCATGAATCCACTCCTGATCCTTTCCTTTGTGGCAGCTGCT < 41bp 1 0.0262562903662625 1 0.0475067794322968 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457354 chr7:142457357 nonsynonymous SNV 0.007 1 24 hm5C_associated_SNPs_30054 0 0 0 2 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3225 chr7 142457357 142457357 1 + A T LUSC 142457354 + 142457334 142457374 41 CCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCT CCATGAATCCACTCCTGATCCTTTCCTTTGTGGCAGCTGCT < 41bp 1 0.0262562903662625 1 0.0475067794322968 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457354 chr7:142457357 nonsynonymous SNV 0.007 1 24 hm5C_associated_SNPs_30054 0 0 0 2 142457357 142457375 mRNA hsa-miR-335 PRSS2 miRanda miRanda
3226 chr7 142457357 142457357 1 + A T LUSC 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG GAATCCACTCCTGATCCTTTCCTTTGTGGCAGCTGCTCGTG < 41bp 1 0.0499996042369919 1 0.031903088092804 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457357 nonsynonymous SNV 0.007 1 20 hm5C_associated_SNPs_30055 0 0 0 2 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3227 chr7 142457357 142457357 1 + A T LUSC 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG GAATCCACTCCTGATCCTTTCCTTTGTGGCAGCTGCTCGTG < 41bp 1 0.0499996042369919 1 0.031903088092804 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457357 nonsynonymous SNV 0.007 1 20 hm5C_associated_SNPs_30055 0 0 0 2 142457357 142457375 mRNA hsa-miR-335 PRSS2 miRanda miRanda
3228 chr7 142457357 142457357 1 + A T LUSC 142457359 + 142457339 142457379 41 AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA AATCCACTCCTGATCCTTTCCTTTGTGGCAGCTGCTCGTGA < 41bp 1 0.156215873170273 1 0.245361864566803 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457359 chr7:142457357 nonsynonymous SNV 0.007 1 19 hm5C_associated_SNPs_30056 0 0 0 2 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3229 chr7 142457357 142457357 1 + A T LUSC 142457359 + 142457339 142457379 41 AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA AATCCACTCCTGATCCTTTCCTTTGTGGCAGCTGCTCGTGA < 41bp 1 0.156215873170273 1 0.245361864566803 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457359 chr7:142457357 nonsynonymous SNV 0.007 1 19 hm5C_associated_SNPs_30056 0 0 0 2 142457357 142457375 mRNA hsa-miR-335 PRSS2 miRanda miRanda
3230 chr7 142457357 142457357 1 + A T LUSC 142457367 + 142457347 142457387 41 CCTGATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATG CCTGATCCTTTCCTTTGTGGCAGCTGCTCGTGAGTATCATG < 41bp 1 0.312599326084921 1 0.280895888805389 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457367 chr7:142457357 nonsynonymous SNV 0.007 1 11 hm5C_associated_SNPs_30057 0 0 0 2 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3231 chr7 142457357 142457357 1 + A T LUSC 142457367 + 142457347 142457387 41 CCTGATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATG CCTGATCCTTTCCTTTGTGGCAGCTGCTCGTGAGTATCATG < 41bp 1 0.312599326084921 1 0.280895888805389 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457367 chr7:142457357 nonsynonymous SNV 0.007 1 11 hm5C_associated_SNPs_30057 0 0 0 2 142457357 142457375 mRNA hsa-miR-335 PRSS2 miRanda miRanda
3232 chr7 142457357 142457357 1 + A T LUSC 142457370 + 142457350 142457390 41 GATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC GATCCTTTCCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC < 41bp 1 0.291753036499528 1 0.164523065090179 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457370 chr7:142457357 nonsynonymous SNV 0.007 1 8 hm5C_associated_SNPs_30058 0 0 0 2 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3233 chr7 142457357 142457357 1 + A T LUSC 142457370 + 142457350 142457390 41 GATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC GATCCTTTCCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC < 41bp 1 0.291753036499528 1 0.164523065090179 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457370 chr7:142457357 nonsynonymous SNV 0.007 1 8 hm5C_associated_SNPs_30058 0 0 0 2 142457357 142457375 mRNA hsa-miR-335 PRSS2 miRanda miRanda
3234 chr7 142457357 142457357 1 + A T LUSC 142457373 + 142457353 142457393 41 CCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGC CCTTTCCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGC < 41bp 1 0.511738413848006 1 0.211803942918777 experiment 0.976523172303988 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457373 chr7:142457357 nonsynonymous SNV 0.007 1 5 hm5C_associated_SNPs_30059 0 0 0 2 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3235 chr7 142457357 142457357 1 + A T LUSC 142457373 + 142457353 142457393 41 CCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGC CCTTTCCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGC < 41bp 1 0.511738413848006 1 0.211803942918777 experiment 0.976523172303988 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457373 chr7:142457357 nonsynonymous SNV 0.007 1 5 hm5C_associated_SNPs_30059 0 0 0 2 142457357 142457375 mRNA hsa-miR-335 PRSS2 miRanda miRanda
3236 chr20 2635176 2635176 1 + G C LUSC 2635157 + 2635137 2635177 41 GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTAGG GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTACG < 41bp 1 0.570498156866297 1 0.331920742988586 experiment 0.859003686267406 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635157 chr20:2635176 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_30083 0 0 1 4 2635165 2635189 mRNA hsa-miR-34a NOP56 miRanda miRanda
3237 chr20 2635176 2635176 1 + G C LUSC 2635157 + 2635137 2635177 41 GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTAGG GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTACG < 41bp 1 0.570498156866297 1 0.331920742988586 experiment 0.859003686267406 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635157 chr20:2635176 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_30083 0 0 1 4 2635165 2635189 mRNA hsa-miR-34c-5p NOP56 miRanda miRanda
3238 chr20 2635176 2635176 1 + G C LUSC 2635157 + 2635137 2635177 41 GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTAGG GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTACG < 41bp 1 0.570498156866297 1 0.331920742988586 experiment 0.859003686267406 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635157 chr20:2635176 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_30083 0 0 1 4 2635168 2635189 mRNA hsa-miR-449a NOP56 miRanda miRanda
3239 chr20 2635176 2635176 1 + G C LUSC 2635157 + 2635137 2635177 41 GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTAGG GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTACG < 41bp 1 0.570498156866297 1 0.331920742988586 experiment 0.859003686267406 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635157 chr20:2635176 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_30083 0 0 1 4 2635168 2635189 mRNA hsa-miR-449b NOP56 miRanda miRanda
3240 chr20 2635176 2635176 1 + G C LUSC 2635184 + 2635164 2635204 41 CAGGAGGAGTTAGGGTACAACTGCCAGACTGGAGGAGTCAT CAGGAGGAGTTACGGTACAACTGCCAGACTGGAGGAGTCAT < 41bp 1 0.411798929874402 1 0.105524927377701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635184 chr20:2635176 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_30084 0 0 1 4 2635165 2635189 mRNA hsa-miR-34a NOP56 miRanda miRanda
3241 chr20 2635176 2635176 1 + G C LUSC 2635184 + 2635164 2635204 41 CAGGAGGAGTTAGGGTACAACTGCCAGACTGGAGGAGTCAT CAGGAGGAGTTACGGTACAACTGCCAGACTGGAGGAGTCAT < 41bp 1 0.411798929874402 1 0.105524927377701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635184 chr20:2635176 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_30084 0 0 1 4 2635165 2635189 mRNA hsa-miR-34c-5p NOP56 miRanda miRanda
3242 chr20 2635176 2635176 1 + G C LUSC 2635184 + 2635164 2635204 41 CAGGAGGAGTTAGGGTACAACTGCCAGACTGGAGGAGTCAT CAGGAGGAGTTACGGTACAACTGCCAGACTGGAGGAGTCAT < 41bp 1 0.411798929874402 1 0.105524927377701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635184 chr20:2635176 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_30084 0 0 1 4 2635168 2635189 mRNA hsa-miR-449a NOP56 miRanda miRanda
3243 chr20 2635176 2635176 1 + G C LUSC 2635184 + 2635164 2635204 41 CAGGAGGAGTTAGGGTACAACTGCCAGACTGGAGGAGTCAT CAGGAGGAGTTACGGTACAACTGCCAGACTGGAGGAGTCAT < 41bp 1 0.411798929874402 1 0.105524927377701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635184 chr20:2635176 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_30084 0 0 1 4 2635168 2635189 mRNA hsa-miR-449b NOP56 miRanda miRanda
3244 chr17 35310518 35310518 1 + G T LUSC 35310535 + 35310515 35310555 41 GATGATGGTGTGGTGATGACCTTCTCTAGTGTCAAAGTTTC GATTATGGTGTGGTGATGACCTTCTCTAGTGTCAAAGTTTC < 41bp 1 0.2565810474511 1 0.079436331987381 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control AATF ENSG00000108270 CDS Human other chr17:35310535 chr17:35310518 nonsynonymous SNV 0.225 3 4 hm5C_associated_SNPs_30091 0 0 1 1 35310509 35310531 mRNA hsa-miR-197 AATF miRanda miRanda
3245 chr17 35310518 35310518 1 + G T LUSC 35310538 + 35310518 35310558 41 GATGGTGTGGTGATGACCTTCTCTAGTGTCAAAGTTTCTGA TATGGTGTGGTGATGACCTTCTCTAGTGTCAAAGTTTCTGA < 41bp 1 0.704268447055228 1 0.880374431610107 experiment 0.591463105889543 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AATF ENSG00000108270 CDS Human other chr17:35310538 chr17:35310518 nonsynonymous SNV 0.225 3 1 hm5C_associated_SNPs_30092 0 0 1 1 35310509 35310531 mRNA hsa-miR-197 AATF miRanda miRanda
3246 chr3 50005961 50005961 1 + A G LUSC 50005946 + 50005926 50005966 41 CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGT CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGGTAAGT < 41bp 1 0.0886637739870157 1 0.201799333095551 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005946 chr3:50005961 nonsynonymous SNV 0.995 1 36 hm5C_associated_SNPs_30146 0 0 1 4 50005954 50005976 mRNA hsa-miR-320a RBM6 miRanda miRanda
3247 chr3 50005961 50005961 1 + A G LUSC 50005946 + 50005926 50005966 41 CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGT CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGGTAAGT < 41bp 1 0.0886637739870157 1 0.201799333095551 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005946 chr3:50005961 nonsynonymous SNV 0.995 1 36 hm5C_associated_SNPs_30146 0 0 1 4 50005954 50005976 mRNA hsa-miR-320b RBM6 miRanda miRanda
3248 chr3 50005961 50005961 1 + A G LUSC 50005946 + 50005926 50005966 41 CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGT CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGGTAAGT < 41bp 1 0.0886637739870157 1 0.201799333095551 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005946 chr3:50005961 nonsynonymous SNV 0.995 1 36 hm5C_associated_SNPs_30146 0 0 1 4 50005956 50005976 mRNA hsa-miR-320c RBM6 miRanda miRanda
3249 chr3 50005961 50005961 1 + A G LUSC 50005946 + 50005926 50005966 41 CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGT CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGGTAAGT < 41bp 1 0.0886637739870157 1 0.201799333095551 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005946 chr3:50005961 nonsynonymous SNV 0.995 1 36 hm5C_associated_SNPs_30146 0 0 1 4 50005957 50005976 mRNA hsa-miR-320d RBM6 miRanda miRanda
3250 chr2 197541356 197541356 1 + G A LUSC 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAACTGCTAGAATCAACTATTGCA < 41bp 1 0.321360802216735 1 0.0727238655090332 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541356 synonymous SNV . 0 20 hm5C_associated_SNPs_30189 0 0 1 7 197541341 197541362 mRNA hsa-miR-15a CCDC150 miRanda miRanda
3251 chr2 197541356 197541356 1 + G A LUSC 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAACTGCTAGAATCAACTATTGCA < 41bp 1 0.321360802216735 1 0.0727238655090332 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541356 synonymous SNV . 0 20 hm5C_associated_SNPs_30189 0 0 1 7 197541341 197541362 mRNA hsa-miR-16 CCDC150 miRanda miRanda
3252 chr2 197541356 197541356 1 + G A LUSC 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAACTGCTAGAATCAACTATTGCA < 41bp 1 0.321360802216735 1 0.0727238655090332 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541356 synonymous SNV . 0 20 hm5C_associated_SNPs_30189 0 0 1 7 197541341 197541362 mRNA hsa-miR-15b CCDC150 miRanda miRanda
3253 chr2 197541356 197541356 1 + G A LUSC 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAACTGCTAGAATCAACTATTGCA < 41bp 1 0.321360802216735 1 0.0727238655090332 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541356 synonymous SNV . 0 20 hm5C_associated_SNPs_30189 0 0 1 7 197541342 197541362 mRNA hsa-miR-195 CCDC150 miRanda miRanda
3254 chr2 197541356 197541356 1 + G A LUSC 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAACTGCTAGAATCAACTATTGCA < 41bp 1 0.321360802216735 1 0.0727238655090332 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541356 synonymous SNV . 0 20 hm5C_associated_SNPs_30189 0 0 1 7 197541341 197541362 mRNA hsa-miR-424 CCDC150 miRanda miRanda
3255 chr2 197541356 197541356 1 + G A LUSC 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAACTGCTAGAATCAACTATTGCA < 41bp 1 0.321360802216735 1 0.0727238655090332 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541356 synonymous SNV . 0 20 hm5C_associated_SNPs_30189 0 0 1 7 197541340 197541362 mRNA hsa-miR-503 CCDC150 miRanda miRanda
3256 chr2 197541356 197541356 1 + G A LUSC 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAACTGCTAGAATCAACTATTGCA < 41bp 1 0.321360802216735 1 0.0727238655090332 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541356 synonymous SNV . 0 20 hm5C_associated_SNPs_30189 0 0 1 7 197541340 197541366 mRNA hsa-miR-544 CCDC150 miRanda miRanda
3257 chrX 152959701 152959701 1 + C G LUSC 152959707 + 152959687 152959727 41 CTCTGCTTTGTCATCGATCTCTCCATGGTGACTGATGTGAG CTCTGCTTTGTCATGGATCTCTCCATGGTGACTGATGTGAG < 41bp 1 0.764390920142103 1 0.949604511260986 experiment 0.471218159715794 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959707 chrX:152959701 nonsynonymous SNV 0.998 0 15 hm5C_associated_SNPs_30190 0 0 1 4 152959697 152959720 mRNA hsa-miR-29a SLC6A8 miRanda miRanda
3258 chrX 152959701 152959701 1 + C G LUSC 152959707 + 152959687 152959727 41 CTCTGCTTTGTCATCGATCTCTCCATGGTGACTGATGTGAG CTCTGCTTTGTCATGGATCTCTCCATGGTGACTGATGTGAG < 41bp 1 0.764390920142103 1 0.949604511260986 experiment 0.471218159715794 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959707 chrX:152959701 nonsynonymous SNV 0.998 0 15 hm5C_associated_SNPs_30190 0 0 1 4 152959696 152959720 mRNA hsa-miR-29b SLC6A8 miRanda miRanda
3259 chrX 152959701 152959701 1 + C G LUSC 152959707 + 152959687 152959727 41 CTCTGCTTTGTCATCGATCTCTCCATGGTGACTGATGTGAG CTCTGCTTTGTCATGGATCTCTCCATGGTGACTGATGTGAG < 41bp 1 0.764390920142103 1 0.949604511260986 experiment 0.471218159715794 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959707 chrX:152959701 nonsynonymous SNV 0.998 0 15 hm5C_associated_SNPs_30190 0 0 1 4 152959687 152959711 mRNA hsa-miR-185 SLC6A8 miRanda miRanda
3260 chrX 152959701 152959701 1 + C G LUSC 152959707 + 152959687 152959727 41 CTCTGCTTTGTCATCGATCTCTCCATGGTGACTGATGTGAG CTCTGCTTTGTCATGGATCTCTCCATGGTGACTGATGTGAG < 41bp 1 0.764390920142103 1 0.949604511260986 experiment 0.471218159715794 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959707 chrX:152959701 nonsynonymous SNV 0.998 0 15 hm5C_associated_SNPs_30190 0 0 1 4 152959697 152959720 mRNA hsa-miR-29c SLC6A8 miRanda miRanda
3261 chrX 152959701 152959701 1 + C G LUSC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATGGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.323003322478042 1 0.0906555950641632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959701 nonsynonymous SNV 0.998 0 4 hm5C_associated_SNPs_30191 0 0 1 4 152959697 152959720 mRNA hsa-miR-29a SLC6A8 miRanda miRanda
3262 chrX 152959701 152959701 1 + C G LUSC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATGGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.323003322478042 1 0.0906555950641632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959701 nonsynonymous SNV 0.998 0 4 hm5C_associated_SNPs_30191 0 0 1 4 152959696 152959720 mRNA hsa-miR-29b SLC6A8 miRanda miRanda
3263 chrX 152959701 152959701 1 + C G LUSC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATGGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.323003322478042 1 0.0906555950641632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959701 nonsynonymous SNV 0.998 0 4 hm5C_associated_SNPs_30191 0 0 1 4 152959687 152959711 mRNA hsa-miR-185 SLC6A8 miRanda miRanda
3264 chrX 152959701 152959701 1 + C G LUSC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATGGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.323003322478042 1 0.0906555950641632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959701 nonsynonymous SNV 0.998 0 4 hm5C_associated_SNPs_30191 0 0 1 4 152959697 152959720 mRNA hsa-miR-29c SLC6A8 miRanda miRanda
3265 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112361 45112382 mRNA hsa-miR-17 CCM2 miRanda miRanda
3266 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112361 45112383 mRNA hsa-miR-17 CCM2 miRanda miRanda
3267 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112361 45112382 mRNA hsa-miR-20a CCM2 miRanda miRanda
3268 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112361 45112383 mRNA hsa-miR-20a CCM2 miRanda miRanda
3269 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112362 45112382 mRNA hsa-miR-93 CCM2 miRanda miRanda
3270 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112362 45112383 mRNA hsa-miR-93 CCM2 miRanda miRanda
3271 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112361 45112382 mRNA hsa-miR-106a CCM2 miRanda miRanda
3272 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112361 45112383 mRNA hsa-miR-106a CCM2 miRanda miRanda
3273 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112354 45112377 mRNA hsa-miR-149 CCM2 miRanda miRanda
3274 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112363 45112382 mRNA hsa-miR-106b CCM2 miRanda miRanda
3275 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112363 45112383 mRNA hsa-miR-106b CCM2 miRanda miRanda
3276 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112356 45112382 mRNA hsa-miR-302a CCM2 miRanda miRanda
3277 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112356 45112382 mRNA hsa-miR-302b CCM2 miRanda miRanda
3278 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112356 45112382 mRNA hsa-miR-302c CCM2 miRanda miRanda
3279 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112356 45112382 mRNA hsa-miR-302d CCM2 miRanda miRanda
3280 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112360 45112382 mRNA hsa-miR-372 CCM2 miRanda miRanda
3281 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112355 45112382 mRNA hsa-miR-373 CCM2 miRanda miRanda
3282 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112361 45112382 mRNA hsa-miR-20b CCM2 miRanda miRanda
3283 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112361 45112383 mRNA hsa-miR-20b CCM2 miRanda miRanda
3284 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112362 45112382 mRNA hsa-miR-520e CCM2 miRanda miRanda
3285 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112362 45112382 mRNA hsa-miR-520a-3p CCM2 miRanda miRanda
3286 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112362 45112382 mRNA hsa-miR-520b CCM2 miRanda miRanda
3287 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112361 45112382 mRNA hsa-miR-520c-3p CCM2 miRanda miRanda
3288 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112363 45112382 mRNA hsa-miR-519d CCM2 miRanda miRanda
3289 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112363 45112383 mRNA hsa-miR-519d CCM2 miRanda miRanda
3290 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112357 45112382 mRNA hsa-miR-520d-3p CCM2 miRanda miRanda
3291 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 45112366 45112382 mRNA hsa-miR-302e CCM2 miRanda miRanda
3292 chr2 37475350 37475350 1 + C A LUSC 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATACAAAGAAGATGGGAGAGAGAT < 41bp 1 0.422185823570759 1 0.211309522390366 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475350 nonsynonymous SNV 0.998 2 20 hm5C_associated_SNPs_30207 0 0 1 2 37475334 37475356 mRNA hsa-miR-9 C2orf56 miRanda miRanda
3293 chr2 37475350 37475350 1 + C A LUSC 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATACAAAGAAGATGGGAGAGAGAT < 41bp 1 0.422185823570759 1 0.211309522390366 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475350 nonsynonymous SNV 0.998 2 20 hm5C_associated_SNPs_30207 0 0 1 2 37475345 37475366 mRNA hsa-miR-150 C2orf56 miRanda miRanda
3294 chr7 92987701 92987701 1 + C T LUSC 92987685 + 92987665 92987705 41 GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGACAAAA GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGATAAAA < 41bp 1 0.509029706354127 1 0.413690477609634 experiment 0.981940587291746 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92987685 chr7:92987701 stopgain 0.996 1 37 hm5C_associated_SNPs_30238 0 0 0 2 92987698 92987719 mRNA hsa-miR-22 CCDC132 miRanda miRanda
3295 chr7 92987701 92987701 1 + C T LUSC 92987685 + 92987665 92987705 41 GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGACAAAA GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGATAAAA < 41bp 1 0.509029706354127 1 0.413690477609634 experiment 0.981940587291746 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92987685 chr7:92987701 stopgain 0.996 1 37 hm5C_associated_SNPs_30238 0 0 0 2 92987682 92987702 mRNA hsa-miR-431 CCDC132 miRanda miRanda
3296 chr10 17275867 17275867 1 + T A LUSC 17275853 + 17275833 17275873 41 AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAA AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGACAGCAA < 41bp 1 0.601480811367868 1 0.832867324352264 experiment 0.797038377264264 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275853 chr10:17275867 synonymous SNV . 0 35 hm5C_associated_SNPs_30260 0 0 1 1 17275853 17275876 mRNA hsa-miR-137 VIM miRanda miRanda
3297 chr10 17275867 17275867 1 + T A LUSC 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCACGGCTGCCCTGCGTGACGTACGACAGCAATAT < 41bp 1 0.374026110656239 1 0.193407416343689 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275867 synonymous SNV . 0 32 hm5C_associated_SNPs_30261 0 0 1 1 17275853 17275876 mRNA hsa-miR-137 VIM miRanda miRanda
3298 chr10 17275867 17275867 1 + T A LUSC 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCACGGCTGCCCTGCGTGACGTACGACAGCAATATGAAAG < 41bp 1 0.100359644377958 1 0.0528012812137604 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275867 synonymous SNV . 0 27 hm5C_associated_SNPs_30262 0 0 1 1 17275853 17275876 mRNA hsa-miR-137 VIM miRanda miRanda
3299 chrX 73045196 73045196 1 - T C LUSC 73045203 - 73045183 73045223 41 TGTGGATACAAAGAAAGGAGCAAGCATAAAAAAGTGCTCTT TGTGGATACAAAGAAAGGAGCAAGCATGAAAAAGTGCTCTT < 41bp 1 0.178450077824226 1 0.338649809360504 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045203 chrX:73045196 . . 0 28 hm5C_associated_SNPs_30301 0 0 1 1 73045181 73045200 lncRNA hsa-miR-1276 XIST miRanda starBase2
3300 chrX 73045196 73045196 1 - T C LUSC 73045215 - 73045195 73045235 41 TGTGATAAGCGTTGTGGATACAAAGAAAGGAGCAAGCATAA TGTGATAAGCGTTGTGGATACAAAGAAAGGAGCAAGCATGA < 41bp 1 0.296646139752804 1 0.470594942569733 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045215 chrX:73045196 . . 0 40 hm5C_associated_SNPs_30302 0 0 1 1 73045181 73045200 lncRNA hsa-miR-1276 XIST miRanda starBase2
3301 chr3 128631375 128631375 1 + G C LUSC 128631356 + 128631336 128631376 41 CTTTTCCTTCCCAGATGCTCCAGAAAACCTAGATGAGCAGA CTTTTCCTTCCCAGATGCTCCAGAAAACCTAGATGAGCACA < 41bp 1 0.537000141368915 1 0.629260957241058 experiment 0.92599971726217 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128631356 chr3:128631375 nonsynonymous SNV 0.977 0 40 hm5C_associated_SNPs_30335 0 0 1 1 128631375 128631397 mRNA hsa-miR-330-5p ACAD9 miRanda miRanda
3302 chr2 74154166 74154166 1 + C G MESO 74154149 + 74154129 74154169 41 GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAA GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATGGAA < 41bp 1 0.662747279222574 1 0.21700257062912 experiment 0.674505441554852 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154149 chr2:74154166 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_30361 0 0 1 1 74154156 74154178 mRNA hsa-miR-455-5p DGUOK miRanda miRanda
3303 chr2 74154166 74154166 1 + C G MESO 74154151 + 74154131 74154171 41 CTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGG CTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATGGAAGG < 41bp 1 0.734297436452959 1 0.42449963092804 experiment 0.531405127094082 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154151 chr2:74154166 nonsynonymous SNV 0.998 4 36 hm5C_associated_SNPs_30362 0 0 1 1 74154156 74154178 mRNA hsa-miR-455-5p DGUOK miRanda miRanda
3304 chr2 74154166 74154166 1 + C G MESO 74154152 + 74154132 74154172 41 TGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGGC TGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATGGAAGGC < 41bp 1 0.749234405799404 1 0.631132006645203 experiment 0.501531188401191 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154152 chr2:74154166 nonsynonymous SNV 0.998 4 35 hm5C_associated_SNPs_30363 0 0 1 1 74154156 74154178 mRNA hsa-miR-455-5p DGUOK miRanda miRanda
3305 chr12 95877020 95877020 1 + G A OV 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGCGATGGAGATGGAGCAACTAGAAAGAAGAAGAAAA < 41bp 1 0.299057713578877 1 0.321467399597168 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877020 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_30429 0 0 1 1 95877001 95877023 mRNA hsa-miR-145 METAP2 miRanda miRanda
3306 chr12 95877020 95877020 1 + G A OV 95877018 + 95876998 95877038 41 TGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAAAGA TGGCGATGGAGATGGAGCAACTAGAAAGAAGAAGAAAAAGA < 41bp 1 0.747459200087246 1 0.442382544279099 experiment 0.505081599825507 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877018 chr12:95877020 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_30430 0 0 1 1 95877001 95877023 mRNA hsa-miR-145 METAP2 miRanda miRanda
3307 chr8 22037887 22037887 1 + G T OV 22037894 + 22037874 22037914 41 CTCACAGCCTGTGGAGAGACCCTGCAAGACAGCACAGGCAA CTCACAGCCTGTGTAGAGACCCTGCAAGACAGCACAGGCAA < 41bp 1 0.0883009039517002 1 0.0991290807723999 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037894 chr8:22037887 nonsynonymous SNV 0.982 3 14 hm5C_associated_SNPs_30470 0 0 1 1 22037886 22037904 mRNA hsa-miR-431 BMP1 miRanda miRanda
3308 chr4 119200397 119200397 1 + G T OV 119200377 + 119200357 119200397 41 TTGGGACCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATG TTGGGACCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATT < 41bp 1 0.057824219398525 1 0.0369261503219604 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200377 chr4:119200397 . . 0 41 hm5C_associated_SNPs_30482 0 0 1 2 119200387 119200410 mRNA hsa-miR-190 SNORA24 miRanda miRanda
3309 chr4 119200397 119200397 1 + G T OV 119200377 + 119200357 119200397 41 TTGGGACCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATG TTGGGACCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATT < 41bp 1 0.057824219398525 1 0.0369261503219604 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200377 chr4:119200397 . . 0 41 hm5C_associated_SNPs_30482 0 0 1 2 119200390 119200410 mRNA hsa-miR-190b SNORA24 miRanda miRanda
3310 chr4 119200397 119200397 1 + G T OV 119200381 + 119200361 119200401 41 GACCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAG GACCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAG < 41bp 1 0.262425104676178 1 0.380262136459351 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200381 chr4:119200397 . . 0 37 hm5C_associated_SNPs_30483 0 0 1 2 119200387 119200410 mRNA hsa-miR-190 SNORA24 miRanda miRanda
3311 chr4 119200397 119200397 1 + G T OV 119200381 + 119200361 119200401 41 GACCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAG GACCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAG < 41bp 1 0.262425104676178 1 0.380262136459351 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200381 chr4:119200397 . . 0 37 hm5C_associated_SNPs_30483 0 0 1 2 119200390 119200410 mRNA hsa-miR-190b SNORA24 miRanda miRanda
3312 chr4 119200397 119200397 1 + G T OV 119200383 + 119200363 119200403 41 CCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAG CCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAGAG < 41bp 1 0.119613053439677 1 0.20463690161705 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200383 chr4:119200397 . . 0 35 hm5C_associated_SNPs_30484 0 0 1 2 119200387 119200410 mRNA hsa-miR-190 SNORA24 miRanda miRanda
3313 chr4 119200397 119200397 1 + G T OV 119200383 + 119200363 119200403 41 CCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAG CCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAGAG < 41bp 1 0.119613053439677 1 0.20463690161705 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200383 chr4:119200397 . . 0 35 hm5C_associated_SNPs_30484 0 0 1 2 119200390 119200410 mRNA hsa-miR-190b SNORA24 miRanda miRanda
3314 chr4 119200397 119200397 1 + G T OV 119200384 + 119200364 119200404 41 CTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGC CTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAGAGC < 41bp 1 0.0191221503960095 1 0.112783163785934 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200384 chr4:119200397 . . 0 34 hm5C_associated_SNPs_30485 0 0 1 2 119200387 119200410 mRNA hsa-miR-190 SNORA24 miRanda miRanda
3315 chr4 119200397 119200397 1 + G T OV 119200384 + 119200364 119200404 41 CTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGC CTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAGAGC < 41bp 1 0.0191221503960095 1 0.112783163785934 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200384 chr4:119200397 . . 0 34 hm5C_associated_SNPs_30485 0 0 1 2 119200390 119200410 mRNA hsa-miR-190b SNORA24 miRanda miRanda
3316 chr4 119200397 119200397 1 + G T OV 119200385 + 119200365 119200405 41 TGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCA TGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAGAGCA < 41bp 1 0.182563719975757 1 0.404353976249695 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200385 chr4:119200397 . . 0 33 hm5C_associated_SNPs_30486 0 0 1 2 119200387 119200410 mRNA hsa-miR-190 SNORA24 miRanda miRanda
3317 chr4 119200397 119200397 1 + G T OV 119200385 + 119200365 119200405 41 TGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCA TGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAGAGCA < 41bp 1 0.182563719975757 1 0.404353976249695 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200385 chr4:119200397 . . 0 33 hm5C_associated_SNPs_30486 0 0 1 2 119200390 119200410 mRNA hsa-miR-190b SNORA24 miRanda miRanda
3318 chr4 119200397 119200397 1 + G T OV 119200388 + 119200368 119200408 41 CAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATAT CAGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAGAGCATAT < 41bp 1 0.0433657156539464 1 0.393951714038849 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200388 chr4:119200397 . . 0 30 hm5C_associated_SNPs_30487 0 0 1 2 119200387 119200410 mRNA hsa-miR-190 SNORA24 miRanda miRanda
3319 chr4 119200397 119200397 1 + G T OV 119200388 + 119200368 119200408 41 CAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATAT CAGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAGAGCATAT < 41bp 1 0.0433657156539464 1 0.393951714038849 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200388 chr4:119200397 . . 0 30 hm5C_associated_SNPs_30487 0 0 1 2 119200390 119200410 mRNA hsa-miR-190b SNORA24 miRanda miRanda
3320 chr4 119200397 119200397 1 + G T OV 119200389 + 119200369 119200409 41 AGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATATC AGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAGAGCATATC < 41bp 1 0.228857345923641 1 0.100559741258621 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200389 chr4:119200397 . . 0 29 hm5C_associated_SNPs_30488 0 0 1 2 119200387 119200410 mRNA hsa-miR-190 SNORA24 miRanda miRanda
3321 chr4 119200397 119200397 1 + G T OV 119200389 + 119200369 119200409 41 AGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATATC AGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAGAGCATATC < 41bp 1 0.228857345923641 1 0.100559741258621 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200389 chr4:119200397 . . 0 29 hm5C_associated_SNPs_30488 0 0 1 2 119200390 119200410 mRNA hsa-miR-190b SNORA24 miRanda miRanda
3322 chr9 131010999 131010999 1 + G A OV 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACCGTGAGGGACCTCATACCCAAGACCATCATG < 41bp 1 0.338254949516467 1 0.0706710815429688 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131010999 nonsynonymous SNV 0.999 1 26 hm5C_associated_SNPs_30524 0 0 1 2 131010999 131011021 mRNA hsa-miR-18a DNM1 miRanda miRanda
3323 chr9 131010999 131010999 1 + G A OV 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACCGTGAGGGACCTCATACCCAAGACCATCATG < 41bp 1 0.338254949516467 1 0.0706710815429688 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131010999 nonsynonymous SNV 0.999 1 26 hm5C_associated_SNPs_30524 0 0 1 2 131010999 131011021 mRNA hsa-miR-18b DNM1 miRanda miRanda
3324 chr10 75520017 75520017 1 + G C OV 75520010 + 75519990 75520030 41 TGGACAGAGTTTTGGAGGGCCCTCAGTGAGCCAGCCCAACC TGGACAGAGTTTTGGAGGGCCCTCAGTCAGCCAGCCCAACC < 41bp 1 0.264717861795607 1 0.02411288022995 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75520010 chr10:75520017 synonymous SNV . 0 28 hm5C_associated_SNPs_30528 0 0 1 1 75520002 75520024 mRNA hsa-miR-149 SEC24C miRanda miRanda
3325 chr17 74557209 74557209 1 + C T OV 74557218 + 74557198 74557238 41 CATGATGATTTCAAGTTATCCCTGTCTGAAGGCAAAGAAAG CATGATGATTTTAAGTTATCCCTGTCTGAAGGCAAAGAAAG < 41bp 1 0.0744758385434105 1 0.0400821566581726 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1B ENSG00000199961 ncRNA_exonic Human snoRNA chr17:74557218 chr17:74557209 . . 0 12 hm5C_associated_SNPs_30570 0 0 1 1 74557204 74557227 mRNA hsa-miR-421 SNORD1B miRanda miRanda
3326 chr17 74557209 74557209 1 + C T OV 74557219 + 74557199 74557239 41 ATGATGATTTCAAGTTATCCCTGTCTGAAGGCAAAGAAAGG ATGATGATTTTAAGTTATCCCTGTCTGAAGGCAAAGAAAGG < 41bp 1 0.0987614622201185 1 0.0693772435188293 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1B ENSG00000199961 ncRNA_exonic Human snoRNA chr17:74557219 chr17:74557209 . . 0 11 hm5C_associated_SNPs_30571 0 0 1 1 74557204 74557227 mRNA hsa-miR-421 SNORD1B miRanda miRanda
3327 chr7 149423086 149423086 1 + G A OV 149423103 + 149423083 149423123 41 CCAGCAGCACCGACTGGGACCTGGATTTTGGGAGTCCTGTG CCAACAGCACCGACTGGGACCTGGATTTTGGGAGTCCTGTG < 41bp 1 0.75945353360467 1 0.762013912200928 experiment 0.48109293279066 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149423103 chr7:149423086 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_30594 0 0 0 1 149423065 149423088 mRNA hsa-miR-138 KRBA1 miRanda miRanda
3328 chr20 39986958 39986958 1 + G T OV 39986960 + 39986940 39986980 41 GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGA GTTTCTGCCCCACGGACATCCCTTCTATGCTGCCTTTGGGA < 41bp 1 0.0160447735555366 1 0.186748504638672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986960 chr20:39986958 nonsynonymous SNV 0.676 1 19 hm5C_associated_SNPs_30613 0 0 1 2 39986953 39986973 mRNA hsa-miR-103 LPIN3 miRanda miRanda
3329 chr20 39986958 39986958 1 + G T OV 39986960 + 39986940 39986980 41 GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGA GTTTCTGCCCCACGGACATCCCTTCTATGCTGCCTTTGGGA < 41bp 1 0.0160447735555366 1 0.186748504638672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986960 chr20:39986958 nonsynonymous SNV 0.676 1 19 hm5C_associated_SNPs_30613 0 0 1 2 39986953 39986973 mRNA hsa-miR-107 LPIN3 miRanda miRanda
3330 chr8 144332294 144332294 1 + G A OV 144332280 + 144332260 144332300 41 AGGAAGAAACCCTATGAGTGCAGTGAGTGTGGGCGGATCTT AGGAAGAAACCCTATGAGTGCAGTGAGTGTGGGCAGATCTT < 41bp 1 0.202357655258749 1 0.180901616811752 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP41 ENSG00000181638;ENSG00000264668 CDS Human other chr8:144332280 chr8:144332294 nonsynonymous SNV 0.132 0 35 hm5C_associated_SNPs_30668 0 0 1 1 144332286 144332309 mRNA hsa-miR-218 ZFP41 miRanda miRanda
3331 chr1 156202165 156202165 1 + G C OV 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATCACACAGCAAATCTATGACAAGTTTATA < 41bp 1 0.0879671206532104 1 0.242846101522446 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202165 nonsynonymous SNV 0.825 0 14 hm5C_associated_SNPs_30695 0 0 1 3 156202163 156202183 mRNA hsa-miR-376c PMF1 miRanda miRanda
3332 chr1 156202165 156202165 1 + G C OV 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATCACACAGCAAATCTATGACAAGTTTATA < 41bp 1 0.0879671206532104 1 0.242846101522446 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202165 nonsynonymous SNV 0.825 0 14 hm5C_associated_SNPs_30695 0 0 1 3 156202163 156202183 mRNA hsa-miR-376a PMF1 miRanda miRanda
3333 chr1 156202165 156202165 1 + G C OV 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATCACACAGCAAATCTATGACAAGTTTATA < 41bp 1 0.0879671206532104 1 0.242846101522446 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202165 nonsynonymous SNV 0.825 0 14 hm5C_associated_SNPs_30695 0 0 1 3 156202162 156202183 mRNA hsa-miR-376b PMF1 miRanda miRanda
3334 chrX 73045820 73045820 1 - C G OV 73045800 - 73045780 73045820 41 GGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATCTCT CGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATCTCT < 41bp 1 0.531572069592086 1 0.470811605453491 experiment 0.936855860815828 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045800 chrX:73045820 . . 0 1 hm5C_associated_SNPs_30765 0 0 1 3 73045814 73045834 lncRNA hsa-miR-455-3p XIST miRanda starBase2
3335 chrX 73045820 73045820 1 - C G OV 73045800 - 73045780 73045820 41 GGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATCTCT CGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATCTCT < 41bp 1 0.531572069592086 1 0.470811605453491 experiment 0.936855860815828 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045800 chrX:73045820 . . 0 1 hm5C_associated_SNPs_30765 0 0 1 3 73045808 73045832 lncRNA hsa-miR-1271-5p XIST miRanda starBase2
3336 chrX 73045820 73045820 1 - C G OV 73045800 - 73045780 73045820 41 GGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATCTCT CGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATCTCT < 41bp 1 0.531572069592086 1 0.470811605453491 experiment 0.936855860815828 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045800 chrX:73045820 . . 0 1 hm5C_associated_SNPs_30765 0 0 1 3 73045808 73045835 lncRNA hsa-miR-96-5p XIST miRanda starBase2
3337 chrX 73045820 73045820 1 - C G OV 73045803 - 73045783 73045823 41 GGTGGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATC GGTCGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATC < 41bp 1 0.3048410776755 1 0.191034018993378 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045803 chrX:73045820 . . 0 4 hm5C_associated_SNPs_30766 0 0 1 3 73045814 73045834 lncRNA hsa-miR-455-3p XIST miRanda starBase2
3338 chrX 73045820 73045820 1 - C G OV 73045803 - 73045783 73045823 41 GGTGGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATC GGTCGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATC < 41bp 1 0.3048410776755 1 0.191034018993378 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045803 chrX:73045820 . . 0 4 hm5C_associated_SNPs_30766 0 0 1 3 73045808 73045832 lncRNA hsa-miR-1271-5p XIST miRanda starBase2
3339 chrX 73045820 73045820 1 - C G OV 73045803 - 73045783 73045823 41 GGTGGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATC GGTCGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATC < 41bp 1 0.3048410776755 1 0.191034018993378 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045803 chrX:73045820 . . 0 4 hm5C_associated_SNPs_30766 0 0 1 3 73045808 73045835 lncRNA hsa-miR-96-5p XIST miRanda starBase2
3340 chrX 73045820 73045820 1 - C G OV 73045808 - 73045788 73045828 41 AATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAATAC AATTTGGTCGACTGTGCCAACGCTACTCCTGGGTTTAATAC < 41bp 1 0.346614366059228 1 0.0612618029117584 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045808 chrX:73045820 . . 0 9 hm5C_associated_SNPs_30767 0 0 1 3 73045814 73045834 lncRNA hsa-miR-455-3p XIST miRanda starBase2
3341 chrX 73045820 73045820 1 - C G OV 73045808 - 73045788 73045828 41 AATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAATAC AATTTGGTCGACTGTGCCAACGCTACTCCTGGGTTTAATAC < 41bp 1 0.346614366059228 1 0.0612618029117584 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045808 chrX:73045820 . . 0 9 hm5C_associated_SNPs_30767 0 0 1 3 73045808 73045832 lncRNA hsa-miR-1271-5p XIST miRanda starBase2
3342 chrX 73045820 73045820 1 - C G OV 73045808 - 73045788 73045828 41 AATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAATAC AATTTGGTCGACTGTGCCAACGCTACTCCTGGGTTTAATAC < 41bp 1 0.346614366059228 1 0.0612618029117584 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045808 chrX:73045820 . . 0 9 hm5C_associated_SNPs_30767 0 0 1 3 73045808 73045835 lncRNA hsa-miR-96-5p XIST miRanda starBase2
3343 chrX 73045820 73045820 1 - C G OV 73045811 - 73045791 73045831 41 AATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAA AATAATTTGGTCGACTGTGCCAACGCTACTCCTGGGTTTAA < 41bp 1 0.32559254562472 1 0.398777276277542 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045811 chrX:73045820 . . 0 12 hm5C_associated_SNPs_30768 0 0 1 3 73045814 73045834 lncRNA hsa-miR-455-3p XIST miRanda starBase2
3344 chrX 73045820 73045820 1 - C G OV 73045811 - 73045791 73045831 41 AATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAA AATAATTTGGTCGACTGTGCCAACGCTACTCCTGGGTTTAA < 41bp 1 0.32559254562472 1 0.398777276277542 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045811 chrX:73045820 . . 0 12 hm5C_associated_SNPs_30768 0 0 1 3 73045808 73045832 lncRNA hsa-miR-1271-5p XIST miRanda starBase2
3345 chrX 73045820 73045820 1 - C G OV 73045811 - 73045791 73045831 41 AATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAA AATAATTTGGTCGACTGTGCCAACGCTACTCCTGGGTTTAA < 41bp 1 0.32559254562472 1 0.398777276277542 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045811 chrX:73045820 . . 0 12 hm5C_associated_SNPs_30768 0 0 1 3 73045808 73045835 lncRNA hsa-miR-96-5p XIST miRanda starBase2
3346 chrX 73045820 73045820 1 - C G OV 73045812 - 73045792 73045832 41 AAATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTA AAATAATTTGGTCGACTGTGCCAACGCTACTCCTGGGTTTA < 41bp 1 0.0341231754248214 1 0.188932627439499 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045812 chrX:73045820 . . 0 13 hm5C_associated_SNPs_30769 0 0 1 3 73045814 73045834 lncRNA hsa-miR-455-3p XIST miRanda starBase2
3347 chrX 73045820 73045820 1 - C G OV 73045812 - 73045792 73045832 41 AAATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTA AAATAATTTGGTCGACTGTGCCAACGCTACTCCTGGGTTTA < 41bp 1 0.0341231754248214 1 0.188932627439499 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045812 chrX:73045820 . . 0 13 hm5C_associated_SNPs_30769 0 0 1 3 73045808 73045832 lncRNA hsa-miR-1271-5p XIST miRanda starBase2
3348 chrX 73045820 73045820 1 - C G OV 73045812 - 73045792 73045832 41 AAATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTA AAATAATTTGGTCGACTGTGCCAACGCTACTCCTGGGTTTA < 41bp 1 0.0341231754248214 1 0.188932627439499 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045812 chrX:73045820 . . 0 13 hm5C_associated_SNPs_30769 0 0 1 3 73045808 73045835 lncRNA hsa-miR-96-5p XIST miRanda starBase2
3349 chr11 65268687 65268687 1 + T G OV 65268671 + 65268651 65268691 41 TGTAGAGTTTGGATGTGTAACTGAGGCGGGGGGGAGTTTTC TGTAGAGTTTGGATGTGTAACTGAGGCGGGGGGGAGGTTTC < 41bp 1 0.721907436267807 1 0.460058242082596 experiment 0.556185127464387 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268671 chr11:65268687 . . 0 37 hm5C_associated_SNPs_30839 0 0 1 3 65268677 65268698 lncRNA hsa-miR-200b-3p MALAT1 miRanda starBase2
3350 chr11 65268687 65268687 1 + T G OV 65268671 + 65268651 65268691 41 TGTAGAGTTTGGATGTGTAACTGAGGCGGGGGGGAGTTTTC TGTAGAGTTTGGATGTGTAACTGAGGCGGGGGGGAGGTTTC < 41bp 1 0.721907436267807 1 0.460058242082596 experiment 0.556185127464387 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268671 chr11:65268687 . . 0 37 hm5C_associated_SNPs_30839 0 0 1 3 65268676 65268698 lncRNA hsa-miR-200c-3p MALAT1 miRanda starBase2
3351 chr11 65268687 65268687 1 + T G OV 65268671 + 65268651 65268691 41 TGTAGAGTTTGGATGTGTAACTGAGGCGGGGGGGAGTTTTC TGTAGAGTTTGGATGTGTAACTGAGGCGGGGGGGAGGTTTC < 41bp 1 0.721907436267807 1 0.460058242082596 experiment 0.556185127464387 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268671 chr11:65268687 . . 0 37 hm5C_associated_SNPs_30839 0 0 1 3 65268677 65268698 lncRNA hsa-miR-429 MALAT1 miRanda starBase2
3352 chr19 49464818 49464818 1 + C A OV 49464798 + 49464778 49464818 41 CCTGTCTCCAGGACGGCCTCCTCTCCTACTTTGGGACGCCC CCTGTCTCCAGGACGGCCTCCTCTCCTACTTTGGGACGCCA < 41bp 1 0.144782781847221 1 0.185932040214539 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BAX ENSG00000087088 CDS Human protein_coding chr19:49464798 chr19:49464818 synonymous SNV . 0 41 hm5C_associated_SNPs_30840 0 0 1 1 49464807 49464830 mRNA hsa-miR-346 BAX miRanda miRanda
3353 chrX 73042907 73042907 1 - A G OV 73042925 - 73042905 73042945 41 GTATTTGCTCATTGGTCTGGCTTAGAGACAGGAAGACATAT GTATTTGCTCATTGGTCTGGCTTAGAGACAGGAAGACACAT < 41bp 1 0.0588908362598779 1 0.0474201440811157 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042925 chrX:73042907 . . 0 39 hm5C_associated_SNPs_30846 0 0 1 1 73042896 73042918 lncRNA hsa-miR-137 XIST miRanda starBase2
3354 chr18 13096261 13096261 1 + C T OV 13096273 + 13096253 13096293 41 CTGGCCAGCGCATTGCCTCACAGTCACGCCGCAGCATGGAT CTGGCCAGTGCATTGCCTCACAGTCACGCCGCAGCATGGAT < 41bp 1 0.114787349240405 1 0.0915606617927551 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13096273 chr18:13096261 nonsynonymous SNV 0.992 4 9 hm5C_associated_SNPs_30887 0 0 1 1 13096260 13096280 mRNA hsa-miR-134 CEP192 miRanda miRanda
3355 chr18 13096263 13096263 1 + C T OV 13096273 + 13096253 13096293 41 CTGGCCAGCGCATTGCCTCACAGTCACGCCGCAGCATGGAT CTGGCCAGCGTATTGCCTCACAGTCACGCCGCAGCATGGAT < 41bp 1 0.114560790276324 1 0.148914635181427 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13096273 chr18:13096263 nonsynonymous SNV 0.991 4 11 hm5C_associated_SNPs_30889 0 0 1 1 13096260 13096280 mRNA hsa-miR-134 CEP192 miRanda miRanda
3356 chr5 131607826 131607826 1 + G A OV 131607829 + 131607809 131607849 41 TTCTTTCTGGACGAGCGGCTCTACTGTGAGAGCCACGCCAA TTCTTTCTGGACGAGCGACTCTACTGTGAGAGCCACGCCAA < 41bp 1 0.774475773943459 1 0.304970383644104 experiment 0.451048452113082 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607829 chr5:131607826 synonymous SNV . 0 18 hm5C_associated_SNPs_30975 0 0 1 2 131607818 131607838 mRNA hsa-miR-27a PDLIM4 miRanda miRanda
3357 chr5 131607826 131607826 1 + G A OV 131607829 + 131607809 131607849 41 TTCTTTCTGGACGAGCGGCTCTACTGTGAGAGCCACGCCAA TTCTTTCTGGACGAGCGACTCTACTGTGAGAGCCACGCCAA < 41bp 1 0.774475773943459 1 0.304970383644104 experiment 0.451048452113082 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607829 chr5:131607826 synonymous SNV . 0 18 hm5C_associated_SNPs_30975 0 0 1 2 131607818 131607838 mRNA hsa-miR-27b PDLIM4 miRanda miRanda
3358 chrX 73047108 73047108 1 - C A OV 73047096 - 73047076 73047116 41 GGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTGCAGAAC GGCAGAGGTGCTTCCTAACCCCTGCCTGATAGGTGCAGAAC < 41bp 1 0.0939168449624184 1 0.311327397823334 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047096 chrX:73047108 . . 0 9 hm5C_associated_SNPs_31025 0 0 1 1 73047101 73047123 lncRNA hsa-miR-671-5p XIST miRanda starBase2
3359 chrX 73047108 73047108 1 - C A OV 73047098 - 73047078 73047118 41 GTGGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTGCAGA GTGGCAGAGGTGCTTCCTAACCCCTGCCTGATAGGTGCAGA < 41bp 1 0.173832394535295 1 0.265608906745911 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047098 chrX:73047108 . . 0 11 hm5C_associated_SNPs_31026 0 0 1 1 73047101 73047123 lncRNA hsa-miR-671-5p XIST miRanda starBase2
3360 chrX 73047108 73047108 1 - C A OV 73047102 - 73047082 73047122 41 ATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTG ATGTGTGGCAGAGGTGCTTCCTAACCCCTGCCTGATAGGTG < 41bp 1 0.0906518638386969 1 0.143833607435226 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047102 chrX:73047108 . . 0 15 hm5C_associated_SNPs_31027 0 0 1 1 73047101 73047123 lncRNA hsa-miR-671-5p XIST miRanda starBase2
3361 chrX 73047108 73047108 1 - C A OV 73047103 - 73047083 73047123 41 CATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGT CATGTGTGGCAGAGGTGCTTCCTAACCCCTGCCTGATAGGT < 41bp 1 0.0496497388124988 1 0.0992226898670197 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047103 chrX:73047108 . . 0 16 hm5C_associated_SNPs_31028 0 0 1 1 73047101 73047123 lncRNA hsa-miR-671-5p XIST miRanda starBase2
3362 chrX 73047108 73047108 1 - C A OV 73047106 - 73047086 73047126 41 TGTCATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTGATA TGTCATGTGTGGCAGAGGTGCTTCCTAACCCCTGCCTGATA < 41bp 1 0.0927945759402637 1 0.133551508188248 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047106 chrX:73047108 . . 0 19 hm5C_associated_SNPs_31029 0 0 1 1 73047101 73047123 lncRNA hsa-miR-671-5p XIST miRanda starBase2
3363 chr2 157407246 157407246 1 + C A OV 157407233 + 157407213 157407253 41 GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGGTTAT GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCATGGTTAT < 41bp 1 0.135217574170557 1 0.280665516853333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407233 chr2:157407246 nonsynonymous SNV 0.991 5 34 hm5C_associated_SNPs_31049 0 0 1 2 157407246 157407258 mRNA hsa-miR-330-5p GPD2 miRanda miRanda
3364 chr2 157407246 157407246 1 + C A OV 157407233 + 157407213 157407253 41 GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGGTTAT GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCATGGTTAT < 41bp 1 0.135217574170557 1 0.280665516853333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407233 chr2:157407246 nonsynonymous SNV 0.991 5 34 hm5C_associated_SNPs_31049 0 0 1 2 157407229 157407250 mRNA hsa-miR-338-3p GPD2 miRanda miRanda
3365 chr17 34147406 34147406 1 + C T PAAD 34147392 + 34147372 34147412 41 AGCAGAGCTCATATAGCCAGCAACCATATAATAACCAGGGA AGCAGAGCTCATATAGCCAGCAACCATATAATAATCAGGGA < 41bp 1 0.189593889859093 1 0.378010183572769 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34147392 chr17:34147406 nonsynonymous SNV . 0 35 hm5C_associated_SNPs_31137 0 0 1 2 34147406 34147425 mRNA hsa-miR-129-5p TAF15 miRanda miRanda
3366 chr17 34147406 34147406 1 + C T PAAD 34147392 + 34147372 34147412 41 AGCAGAGCTCATATAGCCAGCAACCATATAATAACCAGGGA AGCAGAGCTCATATAGCCAGCAACCATATAATAATCAGGGA < 41bp 1 0.189593889859093 1 0.378010183572769 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34147392 chr17:34147406 nonsynonymous SNV . 0 35 hm5C_associated_SNPs_31137 0 0 1 2 34147399 34147420 mRNA hsa-miR-370 TAF15 miRanda miRanda
3367 chr10 17277377 17277377 1 + C A PAAD 17277369 + 17277349 17277389 41 TTGCCACCTACAGGAAGCTGCTGGAAGGCGAGGAGAGCAGG TTGCCACCTACAGGAAGCTGCTGGAAGGAGAGGAGAGCAGG < 41bp 1 0.694288477407889 1 0.553130865097046 experiment 0.611423045184221 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277369 chr10:17277377 synonymous SNV . 0 29 hm5C_associated_SNPs_31159 0 0 1 1 17277376 17277388 mRNA hsa-miR-539 VIM miRanda miRanda
3368 chr10 17277377 17277377 1 + C A PAAD 17277386 + 17277366 17277406 41 CTGCTGGAAGGCGAGGAGAGCAGGTAGGGAACTCAGACTTG CTGCTGGAAGGAGAGGAGAGCAGGTAGGGAACTCAGACTTG < 41bp 1 0.620624362997298 1 0.47293284535408 experiment 0.758751274005403 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277386 chr10:17277377 synonymous SNV . 0 12 hm5C_associated_SNPs_31160 0 0 1 1 17277376 17277388 mRNA hsa-miR-539 VIM miRanda miRanda
3369 chr15 44581358 44581358 1 + A C PAAD 44581338 + 44581318 44581358 41 AACTACTGGAGCATCTCCTCCCGCCACGTCCTGCTTCAGGA AACTACTGGAGCATCTCCTCCCGCCACGTCCTGCTTCAGGC < 41bp 1 0.284403279293635 1 0.564074695110321 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CASC4 ENSG00000166734 CDS Human protein_coding chr15:44581338 chr15:44581358 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_31177 0 0 1 1 44581357 44581383 mRNA hsa-miR-328 CASC4 miRanda miRanda
3370 chr7 75573203 75573203 1 + T C PAAD 75573189 + 75573169 75573209 41 TTGCAGGAAAGTCCAAAGGGCTGCGCGTCTCCTGTGGCTCA TTGCAGGAAAGTCCAAAGGGCTGCGCGTCTCCTGCGGCTCA < 41bp 1 0.385860877237409 1 0.101285248994827 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA14A ENSG00000201643 ncRNA_exonic Human snoRNA chr7:75573189 chr7:75573203 . . 0 35 hm5C_associated_SNPs_31193 0 0 1 3 75573194 75573216 mRNA hsa-miR-208a SNORA14A miRanda miRanda
3371 chr7 75573203 75573203 1 + T C PAAD 75573189 + 75573169 75573209 41 TTGCAGGAAAGTCCAAAGGGCTGCGCGTCTCCTGTGGCTCA TTGCAGGAAAGTCCAAAGGGCTGCGCGTCTCCTGCGGCTCA < 41bp 1 0.385860877237409 1 0.101285248994827 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA14A ENSG00000201643 ncRNA_exonic Human snoRNA chr7:75573189 chr7:75573203 . . 0 35 hm5C_associated_SNPs_31193 0 0 1 3 75573198 75573216 mRNA hsa-miR-499-5p SNORA14A miRanda miRanda
3372 chr7 75573203 75573203 1 + T C PAAD 75573189 + 75573169 75573209 41 TTGCAGGAAAGTCCAAAGGGCTGCGCGTCTCCTGTGGCTCA TTGCAGGAAAGTCCAAAGGGCTGCGCGTCTCCTGCGGCTCA < 41bp 1 0.385860877237409 1 0.101285248994827 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA14A ENSG00000201643 ncRNA_exonic Human snoRNA chr7:75573189 chr7:75573203 . . 0 35 hm5C_associated_SNPs_31193 0 0 1 3 75573194 75573216 mRNA hsa-miR-208b SNORA14A miRanda miRanda
3373 chr7 75573203 75573203 1 + T C PAAD 75573197 + 75573177 75573217 41 AAGTCCAAAGGGCTGCGCGTCTCCTGTGGCTCAGTCTTATT AAGTCCAAAGGGCTGCGCGTCTCCTGCGGCTCAGTCTTATT < 41bp 1 0.185628601392972 1 0.455709844827652 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA14A ENSG00000201643 ncRNA_exonic Human snoRNA chr7:75573197 chr7:75573203 . . 0 27 hm5C_associated_SNPs_31194 0 0 1 3 75573194 75573216 mRNA hsa-miR-208a SNORA14A miRanda miRanda
3374 chr7 75573203 75573203 1 + T C PAAD 75573197 + 75573177 75573217 41 AAGTCCAAAGGGCTGCGCGTCTCCTGTGGCTCAGTCTTATT AAGTCCAAAGGGCTGCGCGTCTCCTGCGGCTCAGTCTTATT < 41bp 1 0.185628601392972 1 0.455709844827652 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA14A ENSG00000201643 ncRNA_exonic Human snoRNA chr7:75573197 chr7:75573203 . . 0 27 hm5C_associated_SNPs_31194 0 0 1 3 75573198 75573216 mRNA hsa-miR-499-5p SNORA14A miRanda miRanda
3375 chr7 75573203 75573203 1 + T C PAAD 75573197 + 75573177 75573217 41 AAGTCCAAAGGGCTGCGCGTCTCCTGTGGCTCAGTCTTATT AAGTCCAAAGGGCTGCGCGTCTCCTGCGGCTCAGTCTTATT < 41bp 1 0.185628601392972 1 0.455709844827652 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA14A ENSG00000201643 ncRNA_exonic Human snoRNA chr7:75573197 chr7:75573203 . . 0 27 hm5C_associated_SNPs_31194 0 0 1 3 75573194 75573216 mRNA hsa-miR-208b SNORA14A miRanda miRanda
3376 chr7 75573203 75573203 1 + T C PAAD 75573212 + 75573192 75573232 41 CGCGTCTCCTGTGGCTCAGTCTTATTTCATACCTGCAACAT CGCGTCTCCTGCGGCTCAGTCTTATTTCATACCTGCAACAT < 41bp 1 0.110410550912617 1 0.209189116954803 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA14A ENSG00000201643 ncRNA_exonic Human snoRNA chr7:75573212 chr7:75573203 . . 0 12 hm5C_associated_SNPs_31195 0 0 1 3 75573194 75573216 mRNA hsa-miR-208a SNORA14A miRanda miRanda
3377 chr7 75573203 75573203 1 + T C PAAD 75573212 + 75573192 75573232 41 CGCGTCTCCTGTGGCTCAGTCTTATTTCATACCTGCAACAT CGCGTCTCCTGCGGCTCAGTCTTATTTCATACCTGCAACAT < 41bp 1 0.110410550912617 1 0.209189116954803 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA14A ENSG00000201643 ncRNA_exonic Human snoRNA chr7:75573212 chr7:75573203 . . 0 12 hm5C_associated_SNPs_31195 0 0 1 3 75573198 75573216 mRNA hsa-miR-499-5p SNORA14A miRanda miRanda
3378 chr7 75573203 75573203 1 + T C PAAD 75573212 + 75573192 75573232 41 CGCGTCTCCTGTGGCTCAGTCTTATTTCATACCTGCAACAT CGCGTCTCCTGCGGCTCAGTCTTATTTCATACCTGCAACAT < 41bp 1 0.110410550912617 1 0.209189116954803 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA14A ENSG00000201643 ncRNA_exonic Human snoRNA chr7:75573212 chr7:75573203 . . 0 12 hm5C_associated_SNPs_31195 0 0 1 3 75573194 75573216 mRNA hsa-miR-208b SNORA14A miRanda miRanda
3379 chr1 11718605 11718605 1 + C A PAAD 11718593 + 11718573 11718613 41 CCTCTGCCTGCCCCCAGCACCTGCCTCAAGTCCCAGGTGGT CCTCTGCCTGCCCCCAGCACCTGCCTCAAGTCACAGGTGGT < 41bp 1 0.214368863977974 1 0.0770134627819061 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718593 chr1:11718605 nonsynonymous SNV 1.000 0 33 hm5C_associated_SNPs_31197 0 0 1 2 11718589 11718609 mRNA hsa-miR-378 FBXO44 miRanda miRanda
3380 chr1 11718605 11718605 1 + C A PAAD 11718593 + 11718573 11718613 41 CCTCTGCCTGCCCCCAGCACCTGCCTCAAGTCCCAGGTGGT CCTCTGCCTGCCCCCAGCACCTGCCTCAAGTCACAGGTGGT < 41bp 1 0.214368863977974 1 0.0770134627819061 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718593 chr1:11718605 nonsynonymous SNV 1.000 0 33 hm5C_associated_SNPs_31197 0 0 1 2 11718588 11718609 mRNA hsa-miR-422a FBXO44 miRanda miRanda
3381 chr14 103804290 103804290 1 + C T PAAD 103804271 + 103804251 103804291 41 GTCTAACCTATTCCGGTGTTCTCTCTCCCATGAGACAAGCC GTCTAACCTATTCCGGTGTTCTCTCTCCCATGAGACAAGTC < 41bp 1 0.0811159278377949 1 0.0654754340648651 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804271 chr14:103804290 . . 0 40 hm5C_associated_SNPs_31212 0 0 1 1 103804279 103804299 mRNA hsa-miR-410 SNORA28 miRanda miRanda
3382 chr14 103804290 103804290 1 + C T PAAD 103804277 + 103804257 103804297 41 CCTATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATA CCTATTCCGGTGTTCTCTCTCCCATGAGACAAGTCGTTATA < 41bp 1 0.204131829690074 1 0.274011045694351 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804277 chr14:103804290 . . 0 34 hm5C_associated_SNPs_31213 0 0 1 1 103804279 103804299 mRNA hsa-miR-410 SNORA28 miRanda miRanda
3383 chr14 103804290 103804290 1 + C T PAAD 103804278 + 103804258 103804298 41 CTATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATAT CTATTCCGGTGTTCTCTCTCCCATGAGACAAGTCGTTATAT < 41bp 1 0.090082416108346 1 0.156279802322388 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804278 chr14:103804290 . . 0 33 hm5C_associated_SNPs_31214 0 0 1 1 103804279 103804299 mRNA hsa-miR-410 SNORA28 miRanda miRanda
3384 chr14 103804290 103804290 1 + C T PAAD 103804279 + 103804259 103804299 41 TATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATATA TATTCCGGTGTTCTCTCTCCCATGAGACAAGTCGTTATATA < 41bp 1 0.490013368855711 1 0.36325204372406 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804279 chr14:103804290 . . 0 32 hm5C_associated_SNPs_31215 0 0 1 1 103804279 103804299 mRNA hsa-miR-410 SNORA28 miRanda miRanda
3385 chr17 62223484 62223484 1 + A G PAAD 62223469 + 62223449 62223489 41 ATGACATTCCAATTAAAGCACGTGTTAGACTGCTGACGCGG ATGACATTCCAATTAAAGCACGTGTTAGACTGCTGGCGCGG < 41bp 1 0.418640942218526 1 0.301680535078049 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223469 chr17:62223484 . . 0 36 hm5C_associated_SNPs_31239 0 0 1 1 62223483 62223505 mRNA hsa-miR-145 SNORD104 miRanda miRanda
3386 chr17 62223484 62223484 1 + A G PAAD 62223481 + 62223461 62223501 41 TTAAAGCACGTGTTAGACTGCTGACGCGGGTGATGCGAACT TTAAAGCACGTGTTAGACTGCTGGCGCGGGTGATGCGAACT < 41bp 1 0.605489427645481 1 0.252405226230621 experiment 0.789021144709039 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223481 chr17:62223484 . . 0 24 hm5C_associated_SNPs_31240 0 0 1 1 62223483 62223505 mRNA hsa-miR-145 SNORD104 miRanda miRanda
3387 chr17 62223484 62223484 1 + A G PAAD 62223496 + 62223476 62223516 41 GACTGCTGACGCGGGTGATGCGAACTGGAGTCTGAGCCTGC GACTGCTGGCGCGGGTGATGCGAACTGGAGTCTGAGCCTGC < 41bp 1 0.49980666104801 1 0.453072398900986 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223496 chr17:62223484 . . 0 9 hm5C_associated_SNPs_31241 0 0 1 1 62223483 62223505 mRNA hsa-miR-145 SNORD104 miRanda miRanda
3388 chr4 119200407 119200407 1 + A G PAAD 119200388 + 119200368 119200408 41 CAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATAT CAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATGT < 41bp 1 0.0449736152079137 1 0.451236963272095 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200388 chr4:119200407 . . 0 40 hm5C_associated_SNPs_31275 0 0 1 2 119200387 119200410 mRNA hsa-miR-190 SNORA24 miRanda miRanda
3389 chr4 119200407 119200407 1 + A G PAAD 119200388 + 119200368 119200408 41 CAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATAT CAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATGT < 41bp 1 0.0449736152079137 1 0.451236963272095 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200388 chr4:119200407 . . 0 40 hm5C_associated_SNPs_31275 0 0 1 2 119200390 119200410 mRNA hsa-miR-190b SNORA24 miRanda miRanda
3390 chr4 119200407 119200407 1 + A G PAAD 119200389 + 119200369 119200409 41 AGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATATC AGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATGTC < 41bp 1 0.269991252086286 1 0.0901718437671661 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200389 chr4:119200407 . . 0 39 hm5C_associated_SNPs_31276 0 0 1 2 119200387 119200410 mRNA hsa-miR-190 SNORA24 miRanda miRanda
3391 chr4 119200407 119200407 1 + A G PAAD 119200389 + 119200369 119200409 41 AGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATATC AGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATGTC < 41bp 1 0.269991252086286 1 0.0901718437671661 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200389 chr4:119200407 . . 0 39 hm5C_associated_SNPs_31276 0 0 1 2 119200390 119200410 mRNA hsa-miR-190b SNORA24 miRanda miRanda
3392 chr16 309975 309975 1 + C A PAAD 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG ATCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG < 41bp 1 0.593698888970518 1 0.0427016913890839 experiment 0.812602222058963 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:309975 synonymous SNV . 0 1 hm5C_associated_SNPs_31306 0 0 1 4 309968 309990 mRNA hsa-miR-18a ITFG3 miRanda miRanda
3393 chr16 309975 309975 1 + C A PAAD 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG ATCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG < 41bp 1 0.593698888970518 1 0.0427016913890839 experiment 0.812602222058963 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:309975 synonymous SNV . 0 1 hm5C_associated_SNPs_31306 0 0 1 4 309968 309981 mRNA hsa-miR-185 ITFG3 miRanda miRanda
3394 chr16 309975 309975 1 + C A PAAD 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG ATCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG < 41bp 1 0.593698888970518 1 0.0427016913890839 experiment 0.812602222058963 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:309975 synonymous SNV . 0 1 hm5C_associated_SNPs_31306 0 0 1 4 309975 309997 mRNA hsa-miR-130b ITFG3 miRanda miRanda
3395 chr16 309975 309975 1 + C A PAAD 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG ATCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG < 41bp 1 0.593698888970518 1 0.0427016913890839 experiment 0.812602222058963 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:309975 synonymous SNV . 0 1 hm5C_associated_SNPs_31306 0 0 1 4 309968 309990 mRNA hsa-miR-18b ITFG3 miRanda miRanda
3396 chr10 75529125 75529125 1 + C A PAAD 75529135 + 75529115 75529155 41 TTTACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCAT TTTACACCAGATGTGCAGGGCAGCGTCGGCTCCGCATCCAT < 41bp 1 0.508110663626559 1 0.120126157999039 experiment 0.983778672746882 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529135 chr10:75529125 nonsynonymous SNV 0.998 3 11 hm5C_associated_SNPs_31307 0 0 1 2 75529107 75529126 mRNA hsa-miR-138 SEC24C miRanda miRanda
3397 chr10 75529125 75529125 1 + C A PAAD 75529135 + 75529115 75529155 41 TTTACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCAT TTTACACCAGATGTGCAGGGCAGCGTCGGCTCCGCATCCAT < 41bp 1 0.508110663626559 1 0.120126157999039 experiment 0.983778672746882 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529135 chr10:75529125 nonsynonymous SNV 0.998 3 11 hm5C_associated_SNPs_31307 0 0 1 2 75529116 75529137 mRNA hsa-miR-874 SEC24C miRanda miRanda
3398 chr10 75529125 75529125 1 + C A PAAD 75529138 + 75529118 75529158 41 ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCATAAT ACACCAGATGTGCAGGGCAGCGTCGGCTCCGCATCCATAAT < 41bp 1 0.443536903620494 1 0.247593432664871 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529138 chr10:75529125 nonsynonymous SNV 0.998 3 8 hm5C_associated_SNPs_31308 0 0 1 2 75529107 75529126 mRNA hsa-miR-138 SEC24C miRanda miRanda
3399 chr10 75529125 75529125 1 + C A PAAD 75529138 + 75529118 75529158 41 ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCATAAT ACACCAGATGTGCAGGGCAGCGTCGGCTCCGCATCCATAAT < 41bp 1 0.443536903620494 1 0.247593432664871 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529138 chr10:75529125 nonsynonymous SNV 0.998 3 8 hm5C_associated_SNPs_31308 0 0 1 2 75529116 75529137 mRNA hsa-miR-874 SEC24C miRanda miRanda
3400 chr3 186502632 186502632 1 + G A PAAD 186502615 + 186502595 186502635 41 ATGGCAATCATCTTTCGGGACTGACCTGAAATGAAGAGAAT ATGGCAATCATCTTTCGGGACTGACCTGAAATGAAGAAAAT < 41bp 1 0.170177646535598 1 0.0827708840370178 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD2 ENSG00000238942 ncRNA_exonic Human snoRNA chr3:186502615 chr3:186502632 . . 0 38 hm5C_associated_SNPs_31315 0 0 1 2 186502630 186502650 mRNA hsa-miR-383 SNORD2 miRanda miRanda
3401 chr3 186502632 186502632 1 + G A PAAD 186502615 + 186502595 186502635 41 ATGGCAATCATCTTTCGGGACTGACCTGAAATGAAGAGAAT ATGGCAATCATCTTTCGGGACTGACCTGAAATGAAGAAAAT < 41bp 1 0.170177646535598 1 0.0827708840370178 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD2 ENSG00000238942 ncRNA_exonic Human snoRNA chr3:186502615 chr3:186502632 . . 0 38 hm5C_associated_SNPs_31315 0 0 1 2 186502619 186502640 mRNA hsa-miR-496 SNORD2 miRanda miRanda
3402 chr3 186502632 186502632 1 + G A PAAD 186502620 + 186502600 186502640 41 AATCATCTTTCGGGACTGACCTGAAATGAAGAGAATACTCA AATCATCTTTCGGGACTGACCTGAAATGAAGAAAATACTCA < 41bp 1 0.500814032212866 1 0.369195520877838 experiment 0.998371935574269 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD2 ENSG00000238942 ncRNA_exonic Human snoRNA chr3:186502620 chr3:186502632 . . 0 33 hm5C_associated_SNPs_31316 0 0 1 2 186502630 186502650 mRNA hsa-miR-383 SNORD2 miRanda miRanda
3403 chr3 186502632 186502632 1 + G A PAAD 186502620 + 186502600 186502640 41 AATCATCTTTCGGGACTGACCTGAAATGAAGAGAATACTCA AATCATCTTTCGGGACTGACCTGAAATGAAGAAAATACTCA < 41bp 1 0.500814032212866 1 0.369195520877838 experiment 0.998371935574269 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD2 ENSG00000238942 ncRNA_exonic Human snoRNA chr3:186502620 chr3:186502632 . . 0 33 hm5C_associated_SNPs_31316 0 0 1 2 186502619 186502640 mRNA hsa-miR-496 SNORD2 miRanda miRanda
3404 chr3 186502632 186502632 1 + G A PAAD 186502637 + 186502617 186502657 41 GACCTGAAATGAAGAGAATACTCATTGCTGATCACTTGATT GACCTGAAATGAAGAAAATACTCATTGCTGATCACTTGATT < 41bp 1 0.355340633985305 1 0.127881973981857 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD2 ENSG00000238942 ncRNA_exonic Human snoRNA chr3:186502637 chr3:186502632 . . 0 16 hm5C_associated_SNPs_31317 0 0 1 2 186502630 186502650 mRNA hsa-miR-383 SNORD2 miRanda miRanda
3405 chr3 186502632 186502632 1 + G A PAAD 186502637 + 186502617 186502657 41 GACCTGAAATGAAGAGAATACTCATTGCTGATCACTTGATT GACCTGAAATGAAGAAAATACTCATTGCTGATCACTTGATT < 41bp 1 0.355340633985305 1 0.127881973981857 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD2 ENSG00000238942 ncRNA_exonic Human snoRNA chr3:186502637 chr3:186502632 . . 0 16 hm5C_associated_SNPs_31317 0 0 1 2 186502619 186502640 mRNA hsa-miR-496 SNORD2 miRanda miRanda
3406 chr3 186502632 186502632 1 + G A PAAD 186502639 + 186502619 186502659 41 CCTGAAATGAAGAGAATACTCATTGCTGATCACTTGATTAT CCTGAAATGAAGAAAATACTCATTGCTGATCACTTGATTAT < 41bp 1 0.311160955944876 1 0.0301434695720673 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD2 ENSG00000238942 ncRNA_exonic Human snoRNA chr3:186502639 chr3:186502632 . . 0 14 hm5C_associated_SNPs_31318 0 0 1 2 186502630 186502650 mRNA hsa-miR-383 SNORD2 miRanda miRanda
3407 chr3 186502632 186502632 1 + G A PAAD 186502639 + 186502619 186502659 41 CCTGAAATGAAGAGAATACTCATTGCTGATCACTTGATTAT CCTGAAATGAAGAAAATACTCATTGCTGATCACTTGATTAT < 41bp 1 0.311160955944876 1 0.0301434695720673 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD2 ENSG00000238942 ncRNA_exonic Human snoRNA chr3:186502639 chr3:186502632 . . 0 14 hm5C_associated_SNPs_31318 0 0 1 2 186502619 186502640 mRNA hsa-miR-496 SNORD2 miRanda miRanda
3408 chr3 186502632 186502632 1 + G A PAAD 186502649 + 186502629 186502669 41 AGAGAATACTCATTGCTGATCACTTGATTATTTGGGCATAA AGAAAATACTCATTGCTGATCACTTGATTATTTGGGCATAA < 41bp 1 0.160750885313222 1 0.0427212119102478 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD2 ENSG00000238942 ncRNA_exonic Human snoRNA chr3:186502649 chr3:186502632 . . 0 4 hm5C_associated_SNPs_31319 0 0 1 2 186502630 186502650 mRNA hsa-miR-383 SNORD2 miRanda miRanda
3409 chr3 186502632 186502632 1 + G A PAAD 186502649 + 186502629 186502669 41 AGAGAATACTCATTGCTGATCACTTGATTATTTGGGCATAA AGAAAATACTCATTGCTGATCACTTGATTATTTGGGCATAA < 41bp 1 0.160750885313222 1 0.0427212119102478 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD2 ENSG00000238942 ncRNA_exonic Human snoRNA chr3:186502649 chr3:186502632 . . 0 4 hm5C_associated_SNPs_31319 0 0 1 2 186502619 186502640 mRNA hsa-miR-496 SNORD2 miRanda miRanda
3410 chr17 55191836 55191836 1 + G A PRAD 55191830 + 55191810 55191850 41 CCCTCTACAGCTCATGCTGCCTGATGGCATCACCGTGGAGG CCCTCTACAGCTCATGCTGCCTGATGACATCACCGTGGAGG < 41bp 1 0.251812521573427 1 0.12207892537117 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55191830 chr17:55191836 nonsynonymous SNV 0.997 3 27 hm5C_associated_SNPs_31474 0 0 1 1 55191824 55191847 mRNA hsa-miR-125a-3p AKAP1 miRanda miRanda
3411 chr12 22208195 22208195 1 + G A PRAD 22208197 + 22208177 22208217 41 AGCTCTACCTCACTAGATGCCATCATAGAATTTCTTAATTA AGCTCTACCTCACTAGATACCATCATAGAATTTCTTAATTA < 41bp 1 0.543947369854039 1 0.0714987814426422 experiment 0.912105260291923 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208197 chr12:22208195 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_31481 0 0 1 2 22208177 22208200 mRNA hsa-miR-183 CMAS miRanda miRanda
3412 chr12 22208195 22208195 1 + G A PRAD 22208197 + 22208177 22208217 41 AGCTCTACCTCACTAGATGCCATCATAGAATTTCTTAATTA AGCTCTACCTCACTAGATACCATCATAGAATTTCTTAATTA < 41bp 1 0.543947369854039 1 0.0714987814426422 experiment 0.912105260291923 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208197 chr12:22208195 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_31481 0 0 1 2 22208194 22208213 mRNA hsa-miR-539 CMAS miRanda miRanda
3413 chr16 29853338 29853338 1 + G A PRAD 29853323 + 29853303 29853343 41 GCTGGGCGGCCCAAGCGTCCCCATGCCCGCCGTGCGCTCTG GCTGGGCGGCCCAAGCGTCCCCATGCCCGCCGTGCACTCTG < 41bp 1 0.311893958687262 1 0.0607756376266479 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29853323 chr16:29853338 synonymous SNV . 0 36 hm5C_associated_SNPs_31536 0 0 0 1 29853328 29853351 mRNA hsa-miR-214 MVP miRanda miRanda
3414 chr1 25679432 25679432 1 + A G PRAD 25679441 + 25679421 25679461 41 TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGCT TGATTGCATCTGTGTGGATTCTTTTTGGAGGTTATGTTGCT < 41bp 1 0.118398199951695 1 0.0334527492523193 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25679441 chr1:25679432 nonsynonymous SNV 0.999 1 12 hm5C_associated_SNPs_31596 0 0 1 2 25679424 25679445 mRNA hsa-miR-186 TMEM50A miRanda miRanda
3415 chr1 25679432 25679432 1 + A G PRAD 25679441 + 25679421 25679461 41 TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGCT TGATTGCATCTGTGTGGATTCTTTTTGGAGGTTATGTTGCT < 41bp 1 0.118398199951695 1 0.0334527492523193 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25679441 chr1:25679432 nonsynonymous SNV 0.999 1 12 hm5C_associated_SNPs_31596 0 0 1 2 25679416 25679436 mRNA hsa-miR-376c TMEM50A miRanda miRanda
3416 chrX 73046745 73046745 1 - C T PRAD 73046726 - 73046706 73046746 41 AGAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA AAAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA < 41bp 1 0.547861144490483 1 0.630633175373077 experiment 0.904277711019035 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046726 chrX:73046745 . . 0 2 hm5C_associated_SNPs_31645 0 0 1 1 73046736 73046756 lncRNA hsa-miR-499a-5p XIST miRanda starBase2
3417 chrX 73046745 73046745 1 - C T PRAD 73046754 - 73046734 73046774 41 GTTGGATGGAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAGA GTTGGATGGAAGTCTCAAGGCTTGAGTTAAAAGTCTTAAGA < 41bp 1 0.554165003067369 1 0.236251682043076 experiment 0.891669993865262 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046754 chrX:73046745 . . 0 30 hm5C_associated_SNPs_31646 0 0 1 1 73046736 73046756 lncRNA hsa-miR-499a-5p XIST miRanda starBase2
3418 chrX 73046744 73046744 1 - T C PRAD 73046726 - 73046706 73046746 41 AGAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA AGGAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA < 41bp 1 0.589326307127254 1 0.67941677570343 experiment 0.821347385745491 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046726 chrX:73046744 . . 0 3 hm5C_associated_SNPs_31647 0 0 1 1 73046736 73046756 lncRNA hsa-miR-499a-5p XIST miRanda starBase2
3419 chrX 73046744 73046744 1 - T C PRAD 73046754 - 73046734 73046774 41 GTTGGATGGAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAGA GTTGGATGGAAGTCTCAAGGCTTGAGTTAGGAGTCTTAAGA < 41bp 1 0.507329178498888 1 0.167037963867188 experiment 0.985341643002224 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046754 chrX:73046744 . . 0 31 hm5C_associated_SNPs_31648 0 0 1 1 73046736 73046756 lncRNA hsa-miR-499a-5p XIST miRanda starBase2
3420 chr1 17953976 17953976 1 + G T PRAD 17953983 + 17953963 17954003 41 ACCAAGAGCGTCAGTGACCGCAGCAGCCTCAACAAGGTGAG ACCAAGAGCGTCATTGACCGCAGCAGCCTCAACAAGGTGAG < 41bp 1 0.782460500585135 1 0.419499576091766 experiment 0.435078998829731 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ARHGEF10L ENSG00000074964 CDS Human protein_coding chr1:17953983 chr1:17953976 nonsynonymous SNV 0.944 4 14 hm5C_associated_SNPs_31707 0 0 1 1 17953969 17953993 mRNA hsa-miR-485-5p ARHGEF10L miRanda miRanda
3421 chr14 60591549 60591549 1 + A G PRAD 60591543 + 60591523 60591563 41 AGTTCTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG AGTTCTATTAGGATACCCTGCTGTTGGCAAAGGAAAACAAG < 41bp 1 0.184604299620908 1 0.115707397460938 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591543 chr14:60591549 nonsynonymous SNV 0.997 2 27 hm5C_associated_SNPs_31711 0 0 1 2 60591532 60591551 mRNA hsa-miR-505 C14orf135 miRanda miRanda
3422 chr14 60591549 60591549 1 + A G PRAD 60591543 + 60591523 60591563 41 AGTTCTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG AGTTCTATTAGGATACCCTGCTGTTGGCAAAGGAAAACAAG < 41bp 1 0.184604299620908 1 0.115707397460938 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591543 chr14:60591549 nonsynonymous SNV 0.997 2 27 hm5C_associated_SNPs_31711 0 0 1 2 60591522 60591550 mRNA hsa-miR-421 C14orf135 miRanda miRanda
3423 chr9 131455947 131455947 1 + A G READ 131455929 + 131455909 131455949 41 TCATTTAGGATTTGACGAAACGTTCGAGTCAAACGCAGAAT TCATTTAGGATTTGACGAAACGTTCGAGTCAAACGCAGGAT < 41bp 1 0.128668598578335 1 0.129589676856995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455929 chr9:131455947 nonsynonymous SNV 0.998 1 39 hm5C_associated_SNPs_31930 0 0 1 1 131455942 131455962 mRNA hsa-miR-370 SET miRanda miRanda
3424 chr4 39757308 39757308 1 + A G READ 39757323 + 39757303 39757343 41 TCCTAATATTAGTTCCGTCACAGGGGCTATTTGTTTGGATA TCCTAGTATTAGTTCCGTCACAGGGGCTATTTGTTTGGATA < 41bp 1 0.797499406271081 1 0.758583545684814 experiment 0.405001187457839 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE2K ENSG00000078140 CDS Human protein_coding chr4:39757323 chr4:39757308 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_31963 0 0 1 1 39757305 39757327 mRNA hsa-miR-486-5p UBE2K miRanda miRanda
3425 chr7 148921497 148921497 1 + C T READ 148921485 + 148921465 148921505 41 AGACCTACAGCCGTAAGGAGCACCTGCAGAACCACCAGCGG AGACCTACAGCCGTAAGGAGCACCTGCAGAACTACCAGCGG < 41bp 1 0.332818640086332 1 0.208380341529846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921485 chr7:148921497 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_31981 0 0 1 1 148921484 148921504 mRNA hsa-miR-138 ZNF282 miRanda miRanda
3426 chr7 148921497 148921497 1 + C T READ 148921487 + 148921467 148921507 41 ACCTACAGCCGTAAGGAGCACCTGCAGAACCACCAGCGGCT ACCTACAGCCGTAAGGAGCACCTGCAGAACTACCAGCGGCT < 41bp 1 0.0549374594218805 1 0.142211407423019 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921487 chr7:148921497 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_31982 0 0 1 1 148921484 148921504 mRNA hsa-miR-138 ZNF282 miRanda miRanda
3427 chr7 148921497 148921497 1 + C T READ 148921488 + 148921468 148921508 41 CCTACAGCCGTAAGGAGCACCTGCAGAACCACCAGCGGCTG CCTACAGCCGTAAGGAGCACCTGCAGAACTACCAGCGGCTG < 41bp 1 0.700134497199845 1 0.551336646080017 experiment 0.599731005600311 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921488 chr7:148921497 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_31983 0 0 1 1 148921484 148921504 mRNA hsa-miR-138 ZNF282 miRanda miRanda
3428 chr17 28747895 28747895 1 + G T SARC 28747907 + 28747887 28747927 41 GGCCAACTGTTTTGAGATCACATTAGAACTGTCTTGTTGCA GGCCAACTTTTTTGAGATCACATTAGAACTGTCTTGTTGCA < 41bp 1 0.300240525300903 1 0.0665839910507202 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28747907 chr17:28747895 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_31989 0 0 1 1 28747883 28747903 mRNA hsa-miR-371-5p CPD miRanda miRanda
3429 chr17 62223815 62223815 1 + A T SARC 62223795 + 62223775 62223815 41 CATAACTGGGGCCGCCTGGCCTCCCGCGGGCGGCCTTTTTA CATAACTGGGGCCGCCTGGCCTCCCGCGGGCGGCCTTTTTT < 41bp 1 0.360577700550316 1 0.744592487812042 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223795 chr17:62223815 . . 0 41 hm5C_associated_SNPs_32023 0 0 1 1 62223801 62223822 lncRNA hsa-miR-579-5p SNHG25 miRanda starBase2
3430 chr17 62223815 62223815 1 + A T SARC 62223805 + 62223785 62223825 41 GCCGCCTGGCCTCCCGCGGGCGGCCTTTTTAACCGCGAGCG GCCGCCTGGCCTCCCGCGGGCGGCCTTTTTTACCGCGAGCG < 41bp 1 0.307887914137494 1 0.256020784378052 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223805 chr17:62223815 . . 0 31 hm5C_associated_SNPs_32024 0 0 1 1 62223801 62223822 lncRNA hsa-miR-579-5p SNHG25 miRanda starBase2
3431 chr17 62223815 62223815 1 + A T SARC 62223808 + 62223788 62223828 41 GCCTGGCCTCCCGCGGGCGGCCTTTTTAACCGCGAGCGACA GCCTGGCCTCCCGCGGGCGGCCTTTTTTACCGCGAGCGACA < 41bp 1 0.0273651796344092 1 0.034343421459198 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223808 chr17:62223815 . . 0 28 hm5C_associated_SNPs_32025 0 0 1 1 62223801 62223822 lncRNA hsa-miR-579-5p SNHG25 miRanda starBase2
3432 chr17 62223815 62223815 1 + A T SARC 62223817 + 62223797 62223837 41 CCCGCGGGCGGCCTTTTTAACCGCGAGCGACAAGAAGTAAC CCCGCGGGCGGCCTTTTTTACCGCGAGCGACAAGAAGTAAC < 41bp 1 0.550957681421666 1 0.258524209260941 experiment 0.898084637156667 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223817 chr17:62223815 . . 0 19 hm5C_associated_SNPs_32026 0 0 1 1 62223801 62223822 lncRNA hsa-miR-579-5p SNHG25 miRanda starBase2
3433 chr17 62223815 62223815 1 + A T SARC 62223827 + 62223807 62223847 41 GCCTTTTTAACCGCGAGCGACAAGAAGTAACCTGACTGTCC GCCTTTTTTACCGCGAGCGACAAGAAGTAACCTGACTGTCC < 41bp 1 0.665297357548909 1 0.331706672906876 experiment 0.669405284902181 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223827 chr17:62223815 . . 0 9 hm5C_associated_SNPs_32027 0 0 1 1 62223801 62223822 lncRNA hsa-miR-579-5p SNHG25 miRanda starBase2
3434 chr11 993358 993358 1 + G C SARC 993371 + 993351 993391 41 GAAACTTGATAGCTGGAGACCCGAGATCCAGGTGAGAGGCC GAAACTTCATAGCTGGAGACCCGAGATCCAGGTGAGAGGCC < 41bp 1 0.1934351863576 1 0.543855428695679 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:993371 chr11:993358 nonsynonymous SNV 0.990 4 8 hm5C_associated_SNPs_32034 0 0 1 1 993346 993367 mRNA hsa-miR-338-3p AP2A2 miRanda miRanda
3435 chr11 993375 993375 1 + G C SARC 993371 + 993351 993391 41 GAAACTTGATAGCTGGAGACCCGAGATCCAGGTGAGAGGCC GAAACTTGATAGCTGGAGACCCGACATCCAGGTGAGAGGCC < 41bp 1 0.0863257435265602 1 0.594800889492035 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:993371 chr11:993375 nonsynonymous SNV 0.223 3 25 hm5C_associated_SNPs_32035 0 0 1 2 993362 993381 mRNA hsa-miR-378 AP2A2 miRanda miRanda
3436 chr11 993375 993375 1 + G C SARC 993371 + 993351 993391 41 GAAACTTGATAGCTGGAGACCCGAGATCCAGGTGAGAGGCC GAAACTTGATAGCTGGAGACCCGACATCCAGGTGAGAGGCC < 41bp 1 0.0863257435265602 1 0.594800889492035 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:993371 chr11:993375 nonsynonymous SNV 0.223 3 25 hm5C_associated_SNPs_32035 0 0 1 2 993361 993381 mRNA hsa-miR-422a AP2A2 miRanda miRanda
3437 chr1 145116299 145116299 1 + G T SARC 145116287 + 145116267 145116307 41 TTCCTTCAAAGAAGGCAGTCCTTTGGGAAGGTGTTTTTTTT TTCCTTCAAAGAAGGCAGTCCTTTGGGAAGGTTTTTTTTTT < 41bp 1 0.0482530806814557 1 0.120517730712891 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145116287 chr1:145116299 . . 0 33 hm5C_associated_SNPs_32045 0 0 1 1 145116292 145116314 mRNA hsa-miR-495 SEC22B miRanda miRanda
3438 chrX 7171296 7171296 1 + C A SARC 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGAATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA < 41bp 1 0.302702576088157 1 0.0641660094261169 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171296 nonsynonymous SNV 0.002 1 5 hm5C_associated_SNPs_32051 0 0 0 1 7171295 7171316 mRNA hsa-miR-190b STS miRanda miRanda
3439 chr9 131456028 131456028 1 + G T SARC 131456045 + 131456025 131456065 41 GCTGATGAGTTAGGAGAGGTCATCAAAGATGATATTTGGCC GCTTATGAGTTAGGAGAGGTCATCAAAGATGATATTTGGCC < 41bp 1 0.583890078948787 1 0.101844608783722 experiment 0.832219842102426 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SET ENSG00000119335 CDS Human protein_coding chr9:131456045 chr9:131456028 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_32064 0 0 1 1 131456028 131456051 mRNA hsa-miR-758 SET miRanda miRanda
3440 chr11 120957735 120957735 1 + G T SARC 120957753 + 120957733 120957773 41 CAGCTCTCGGGCATTGCATTCCTTTGGCATTAGGGATGGAG CATCTCTCGGGCATTGCATTCCTTTGGCATTAGGGATGGAG < 41bp 1 0.0365687017525604 1 0.0978855490684509 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBCEL ENSG00000154114 CDS Human protein_coding chr11:120957753 chr11:120957735 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_32124 0 0 1 1 120957727 120957748 mRNA hsa-miR-365 TBCEL miRanda miRanda
3441 chr5 134130594 134130594 1 + G T SARC 134130604 + 134130584 134130624 41 TATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGG TATGTTTTCATCTACTTTCCCCAGAGCTATGGAGGCTTTGG < 41bp 1 0.642094958973777 1 0.502299308776855 experiment 0.715810082052446 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130604 chr5:134130594 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_32155 0 0 1 3 134130581 134130602 mRNA hsa-miR-106b DDX46 miRanda miRanda
3442 chr5 134130594 134130594 1 + G T SARC 134130604 + 134130584 134130624 41 TATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGG TATGTTTTCATCTACTTTCCCCAGAGCTATGGAGGCTTTGG < 41bp 1 0.642094958973777 1 0.502299308776855 experiment 0.715810082052446 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130604 chr5:134130594 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_32155 0 0 1 3 134130588 134130610 mRNA hsa-miR-330-5p DDX46 miRanda miRanda
3443 chr5 134130594 134130594 1 + G T SARC 134130604 + 134130584 134130624 41 TATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGG TATGTTTTCATCTACTTTCCCCAGAGCTATGGAGGCTTTGG < 41bp 1 0.642094958973777 1 0.502299308776855 experiment 0.715810082052446 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130604 chr5:134130594 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_32155 0 0 1 3 134130591 134130610 mRNA hsa-miR-326 DDX46 miRanda miRanda
3444 chr5 134130594 134130594 1 + G T SARC 134130605 + 134130585 134130625 41 ATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGGC ATGTTTTCATCTACTTTCCCCAGAGCTATGGAGGCTTTGGC < 41bp 1 0.364728380795317 1 0.353326201438904 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130605 chr5:134130594 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_32156 0 0 1 3 134130581 134130602 mRNA hsa-miR-106b DDX46 miRanda miRanda
3445 chr5 134130594 134130594 1 + G T SARC 134130605 + 134130585 134130625 41 ATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGGC ATGTTTTCATCTACTTTCCCCAGAGCTATGGAGGCTTTGGC < 41bp 1 0.364728380795317 1 0.353326201438904 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130605 chr5:134130594 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_32156 0 0 1 3 134130588 134130610 mRNA hsa-miR-330-5p DDX46 miRanda miRanda
3446 chr5 134130594 134130594 1 + G T SARC 134130605 + 134130585 134130625 41 ATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGGC ATGTTTTCATCTACTTTCCCCAGAGCTATGGAGGCTTTGGC < 41bp 1 0.364728380795317 1 0.353326201438904 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130605 chr5:134130594 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_32156 0 0 1 3 134130591 134130610 mRNA hsa-miR-326 DDX46 miRanda miRanda
3447 chr7 22896273 22896273 1 + G T SARC 22896268 + 22896248 22896288 41 CTCTAATCTGATTTTATGTGCTTCTGCTGTGATGGATTAAA CTCTAATCTGATTTTATGTGCTTCTTCTGTGATGGATTAAA < 41bp 1 0.0828969405546682 1 0.0416432023048401 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD93 ENSG00000221740 ncRNA_exonic Human snoRNA chr7:22896268 chr7:22896273 . . 0 26 hm5C_associated_SNPs_32158 0 0 1 1 22896258 22896280 mRNA hsa-miR-377 SNORD93 miRanda miRanda
3448 chr7 22896273 22896273 1 + G T SARC 22896271 + 22896251 22896291 41 TAATCTGATTTTATGTGCTTCTGCTGTGATGGATTAAAGGA TAATCTGATTTTATGTGCTTCTTCTGTGATGGATTAAAGGA < 41bp 1 0.164649103196407 1 0.0713326930999756 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD93 ENSG00000221740 ncRNA_exonic Human snoRNA chr7:22896271 chr7:22896273 . . 0 23 hm5C_associated_SNPs_32159 0 0 1 1 22896258 22896280 mRNA hsa-miR-377 SNORD93 miRanda miRanda
3449 chr2 241534002 241534002 1 + G T SARC 241533998 + 241533978 241534018 41 GGTAGATGCAGCGGTAGCATCTGAGCTCCTGTCCCAGCTCC GGTAGATGCAGCGGTAGCATCTGATCTCCTGTCCCAGCTCC < 41bp 1 0.592055602594857 1 0.51717609167099 experiment 0.815888794810287 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241533998 chr2:241534002 nonsynonymous SNV 0.765 1 25 hm5C_associated_SNPs_32219 0 0 1 1 241533990 241534012 mRNA hsa-miR-184 CAPN10 miRanda miRanda
3450 chr10 17271832 17271832 1 + G T SARC 17271847 + 17271827 17271867 41 GAGCAGCTCAAGGGCCAAGGCAAGTCGCGCCTGGGGGACCT GAGCATCTCAAGGGCCAAGGCAAGTCGCGCCTGGGGGACCT < 41bp 1 0.711490185715353 1 0.368665277957916 experiment 0.577019628569294 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17271847 chr10:17271832 nonsynonymous SNV 1.000 5 6 hm5C_associated_SNPs_32254 0 0 1 1 17271824 17271844 mRNA hsa-miR-328 VIM miRanda miRanda
3451 chr12 93968582 93968582 1 + G T SARC 93968564 + 93968544 93968584 41 AAAAGAGGCACCAGAAGGAACTTTCTTGATTAGAGATAGCT AAAAGAGGCACCAGAAGGAACTTTCTTGATTAGAGATATCT < 41bp 1 0.066870898932359 1 0.0536777079105377 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SOCS2 ENSG00000120833 CDS Human protein_coding chr12:93968564 chr12:93968582 nonsynonymous SNV 0.996 5 39 hm5C_associated_SNPs_32280 0 0 1 2 93968579 93968601 mRNA hsa-miR-196a SOCS2 miRanda miRanda
3452 chr12 93968582 93968582 1 + G T SARC 93968564 + 93968544 93968584 41 AAAAGAGGCACCAGAAGGAACTTTCTTGATTAGAGATAGCT AAAAGAGGCACCAGAAGGAACTTTCTTGATTAGAGATATCT < 41bp 1 0.066870898932359 1 0.0536777079105377 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SOCS2 ENSG00000120833 CDS Human protein_coding chr12:93968564 chr12:93968582 nonsynonymous SNV 0.996 5 39 hm5C_associated_SNPs_32280 0 0 1 2 93968580 93968601 mRNA hsa-miR-196b SOCS2 miRanda miRanda
3453 chr12 125603235 125603235 1 + G T SARC 125603220 + 125603200 125603240 41 TGTGGAACTGGATGGTGTCCCTTCTGGCCACAGGAGCGGCC TGTGGAACTGGATGGTGTCCCTTCTGGCCACAGGATCGGCC < 41bp 1 0.293313991140903 1 0.0455112755298615 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AACS ENSG00000081760 CDS Human protein_coding chr12:125603220 chr12:125603235 nonsynonymous SNV 0.006 1 36 hm5C_associated_SNPs_32285 0 0 1 1 125603235 125603256 mRNA hsa-miR-487b AACS miRanda miRanda
3454 chr17 62223718 62223718 1 + G T SARC 62223702 + 62223682 62223722 41 TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGA TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCTCCGA < 41bp 1 0.274341709009392 1 0.0450522005558014 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223702 chr17:62223718 . . 0 37 hm5C_associated_SNPs_32310 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
3455 chr17 62223718 62223718 1 + G T SARC 62223702 + 62223682 62223722 41 TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGA TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCTCCGA < 41bp 1 0.274341709009392 1 0.0450522005558014 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223702 chr17:62223718 . . 0 37 hm5C_associated_SNPs_32310 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
3456 chr17 62223718 62223718 1 + G T SARC 62223702 + 62223682 62223722 41 TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGA TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCTCCGA < 41bp 1 0.274341709009392 1 0.0450522005558014 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223702 chr17:62223718 . . 0 37 hm5C_associated_SNPs_32310 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
3457 chr17 62223718 62223718 1 + G T SARC 62223702 + 62223682 62223722 41 TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGA TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCTCCGA < 41bp 1 0.274341709009392 1 0.0450522005558014 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223702 chr17:62223718 . . 0 37 hm5C_associated_SNPs_32310 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
3458 chr17 62223718 62223718 1 + G T SARC 62223706 + 62223686 62223726 41 TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTT TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCTCCGAGCTT < 41bp 1 0.307013736488637 1 0.0560866892337799 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223706 chr17:62223718 . . 0 33 hm5C_associated_SNPs_32311 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
3459 chr17 62223718 62223718 1 + G T SARC 62223706 + 62223686 62223726 41 TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTT TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCTCCGAGCTT < 41bp 1 0.307013736488637 1 0.0560866892337799 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223706 chr17:62223718 . . 0 33 hm5C_associated_SNPs_32311 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
3460 chr17 62223718 62223718 1 + G T SARC 62223706 + 62223686 62223726 41 TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTT TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCTCCGAGCTT < 41bp 1 0.307013736488637 1 0.0560866892337799 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223706 chr17:62223718 . . 0 33 hm5C_associated_SNPs_32311 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
3461 chr17 62223718 62223718 1 + G T SARC 62223706 + 62223686 62223726 41 TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTT TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCTCCGAGCTT < 41bp 1 0.307013736488637 1 0.0560866892337799 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223706 chr17:62223718 . . 0 33 hm5C_associated_SNPs_32311 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
3462 chr17 62223718 62223718 1 + G T SARC 62223713 + 62223693 62223733 41 GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG GGCGACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTG < 41bp 1 0.128779562011319 1 0.0448211133480072 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223713 chr17:62223718 . . 0 26 hm5C_associated_SNPs_32312 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
3463 chr17 62223718 62223718 1 + G T SARC 62223713 + 62223693 62223733 41 GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG GGCGACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTG < 41bp 1 0.128779562011319 1 0.0448211133480072 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223713 chr17:62223718 . . 0 26 hm5C_associated_SNPs_32312 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
3464 chr17 62223718 62223718 1 + G T SARC 62223713 + 62223693 62223733 41 GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG GGCGACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTG < 41bp 1 0.128779562011319 1 0.0448211133480072 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223713 chr17:62223718 . . 0 26 hm5C_associated_SNPs_32312 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
3465 chr17 62223718 62223718 1 + G T SARC 62223713 + 62223693 62223733 41 GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG GGCGACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTG < 41bp 1 0.128779562011319 1 0.0448211133480072 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223713 chr17:62223718 . . 0 26 hm5C_associated_SNPs_32312 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
3466 chr17 62223718 62223718 1 + G T SARC 62223714 + 62223694 62223734 41 GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG GCGACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGG < 41bp 1 0.168886173031979 1 0.0599079132080078 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223714 chr17:62223718 . . 0 25 hm5C_associated_SNPs_32313 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
3467 chr17 62223718 62223718 1 + G T SARC 62223714 + 62223694 62223734 41 GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG GCGACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGG < 41bp 1 0.168886173031979 1 0.0599079132080078 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223714 chr17:62223718 . . 0 25 hm5C_associated_SNPs_32313 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
3468 chr17 62223718 62223718 1 + G T SARC 62223714 + 62223694 62223734 41 GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG GCGACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGG < 41bp 1 0.168886173031979 1 0.0599079132080078 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223714 chr17:62223718 . . 0 25 hm5C_associated_SNPs_32313 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
3469 chr17 62223718 62223718 1 + G T SARC 62223714 + 62223694 62223734 41 GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG GCGACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGG < 41bp 1 0.168886173031979 1 0.0599079132080078 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223714 chr17:62223718 . . 0 25 hm5C_associated_SNPs_32313 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
3470 chr17 62223718 62223718 1 + G T SARC 62223715 + 62223695 62223735 41 CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC CGACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGC < 41bp 1 0.0551994139057244 1 0.0331384837627411 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223715 chr17:62223718 . . 0 24 hm5C_associated_SNPs_32314 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
3471 chr17 62223718 62223718 1 + G T SARC 62223715 + 62223695 62223735 41 CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC CGACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGC < 41bp 1 0.0551994139057244 1 0.0331384837627411 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223715 chr17:62223718 . . 0 24 hm5C_associated_SNPs_32314 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
3472 chr17 62223718 62223718 1 + G T SARC 62223715 + 62223695 62223735 41 CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC CGACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGC < 41bp 1 0.0551994139057244 1 0.0331384837627411 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223715 chr17:62223718 . . 0 24 hm5C_associated_SNPs_32314 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
3473 chr17 62223718 62223718 1 + G T SARC 62223715 + 62223695 62223735 41 CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC CGACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGC < 41bp 1 0.0551994139057244 1 0.0331384837627411 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223715 chr17:62223718 . . 0 24 hm5C_associated_SNPs_32314 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
3474 chr17 62223718 62223718 1 + G T SARC 62223716 + 62223696 62223736 41 GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG GACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGCG < 41bp 1 0.0333584690997475 1 0.0497008562088013 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223716 chr17:62223718 . . 0 23 hm5C_associated_SNPs_32315 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
3475 chr17 62223718 62223718 1 + G T SARC 62223716 + 62223696 62223736 41 GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG GACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGCG < 41bp 1 0.0333584690997475 1 0.0497008562088013 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223716 chr17:62223718 . . 0 23 hm5C_associated_SNPs_32315 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
3476 chr17 62223718 62223718 1 + G T SARC 62223716 + 62223696 62223736 41 GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG GACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGCG < 41bp 1 0.0333584690997475 1 0.0497008562088013 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223716 chr17:62223718 . . 0 23 hm5C_associated_SNPs_32315 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
3477 chr17 62223718 62223718 1 + G T SARC 62223716 + 62223696 62223736 41 GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG GACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGCG < 41bp 1 0.0333584690997475 1 0.0497008562088013 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223716 chr17:62223718 . . 0 23 hm5C_associated_SNPs_32315 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
3478 chr17 62223718 62223718 1 + G T SARC 62223720 + 62223700 62223740 41 CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG CGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGCGCCGG < 41bp 1 0.629094854955484 1 0.604879856109619 experiment 0.741810290089031 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223720 chr17:62223718 . . 0 19 hm5C_associated_SNPs_32316 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
3479 chr17 62223718 62223718 1 + G T SARC 62223720 + 62223700 62223740 41 CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG CGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGCGCCGG < 41bp 1 0.629094854955484 1 0.604879856109619 experiment 0.741810290089031 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223720 chr17:62223718 . . 0 19 hm5C_associated_SNPs_32316 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
3480 chr17 62223718 62223718 1 + G T SARC 62223720 + 62223700 62223740 41 CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG CGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGCGCCGG < 41bp 1 0.629094854955484 1 0.604879856109619 experiment 0.741810290089031 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223720 chr17:62223718 . . 0 19 hm5C_associated_SNPs_32316 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
3481 chr17 62223718 62223718 1 + G T SARC 62223720 + 62223700 62223740 41 CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG CGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGCGCCGG < 41bp 1 0.629094854955484 1 0.604879856109619 experiment 0.741810290089031 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223720 chr17:62223718 . . 0 19 hm5C_associated_SNPs_32316 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
3482 chr17 62223718 62223718 1 + G T SARC 62223727 + 62223707 62223747 41 TTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA TTTGAGCCCCCTCCGAGCTTCCTCGTGGCGCCGGGGGTCAA < 41bp 1 0.216405234060655 1 0.245173364877701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223727 chr17:62223718 . . 0 12 hm5C_associated_SNPs_32317 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
3483 chr17 62223718 62223718 1 + G T SARC 62223727 + 62223707 62223747 41 TTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA TTTGAGCCCCCTCCGAGCTTCCTCGTGGCGCCGGGGGTCAA < 41bp 1 0.216405234060655 1 0.245173364877701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223727 chr17:62223718 . . 0 12 hm5C_associated_SNPs_32317 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
3484 chr17 62223718 62223718 1 + G T SARC 62223727 + 62223707 62223747 41 TTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA TTTGAGCCCCCTCCGAGCTTCCTCGTGGCGCCGGGGGTCAA < 41bp 1 0.216405234060655 1 0.245173364877701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223727 chr17:62223718 . . 0 12 hm5C_associated_SNPs_32317 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
3485 chr17 62223718 62223718 1 + G T SARC 62223727 + 62223707 62223747 41 TTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA TTTGAGCCCCCTCCGAGCTTCCTCGTGGCGCCGGGGGTCAA < 41bp 1 0.216405234060655 1 0.245173364877701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223727 chr17:62223718 . . 0 12 hm5C_associated_SNPs_32317 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
3486 chr17 62223718 62223718 1 + G T SARC 62223728 + 62223708 62223748 41 TTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT TTGAGCCCCCTCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT < 41bp 1 0.597556606547794 1 0.316085577011108 experiment 0.804886786904412 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223728 chr17:62223718 . . 0 11 hm5C_associated_SNPs_32318 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
3487 chr17 62223718 62223718 1 + G T SARC 62223728 + 62223708 62223748 41 TTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT TTGAGCCCCCTCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT < 41bp 1 0.597556606547794 1 0.316085577011108 experiment 0.804886786904412 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223728 chr17:62223718 . . 0 11 hm5C_associated_SNPs_32318 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
3488 chr17 62223718 62223718 1 + G T SARC 62223728 + 62223708 62223748 41 TTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT TTGAGCCCCCTCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT < 41bp 1 0.597556606547794 1 0.316085577011108 experiment 0.804886786904412 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223728 chr17:62223718 . . 0 11 hm5C_associated_SNPs_32318 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
3489 chr17 62223718 62223718 1 + G T SARC 62223728 + 62223708 62223748 41 TTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT TTGAGCCCCCTCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT < 41bp 1 0.597556606547794 1 0.316085577011108 experiment 0.804886786904412 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223728 chr17:62223718 . . 0 11 hm5C_associated_SNPs_32318 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
3490 chr17 62223718 62223718 1 + G T SARC 62223735 + 62223715 62223755 41 CCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAATCTGCAGC CCCTCCGAGCTTCCTCGTGGCGCCGGGGGTCAATCTGCAGC < 41bp 1 0.641344359204468 1 0.107411712408066 experiment 0.717311281591063 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223735 chr17:62223718 . . 0 4 hm5C_associated_SNPs_32319 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
3491 chr17 62223718 62223718 1 + G T SARC 62223735 + 62223715 62223755 41 CCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAATCTGCAGC CCCTCCGAGCTTCCTCGTGGCGCCGGGGGTCAATCTGCAGC < 41bp 1 0.641344359204468 1 0.107411712408066 experiment 0.717311281591063 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223735 chr17:62223718 . . 0 4 hm5C_associated_SNPs_32319 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
3492 chr17 62223718 62223718 1 + G T SARC 62223735 + 62223715 62223755 41 CCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAATCTGCAGC CCCTCCGAGCTTCCTCGTGGCGCCGGGGGTCAATCTGCAGC < 41bp 1 0.641344359204468 1 0.107411712408066 experiment 0.717311281591063 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223735 chr17:62223718 . . 0 4 hm5C_associated_SNPs_32319 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
3493 chr17 62223718 62223718 1 + G T SARC 62223735 + 62223715 62223755 41 CCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAATCTGCAGC CCCTCCGAGCTTCCTCGTGGCGCCGGGGGTCAATCTGCAGC < 41bp 1 0.641344359204468 1 0.107411712408066 experiment 0.717311281591063 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223735 chr17:62223718 . . 0 4 hm5C_associated_SNPs_32319 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
3494 chrX 73040692 73040692 1 - G T SARC 73040673 - 73040653 73040693 41 GCTAAGATAAATGGAAGACTCTTGAACTTGTGAACTGATGT GATAAGATAAATGGAAGACTCTTGAACTTGTGAACTGATGT < 41bp 1 0.290296710642904 1 0.552836537361145 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040673 chrX:73040692 . . 0 2 hm5C_associated_SNPs_32361 0 0 1 1 73040691 73040710 lncRNA hsa-miR-3140-3p XIST miRanda starBase2
3495 chrX 73040692 73040692 1 - G T SARC 73040675 - 73040655 73040695 41 AAGCTAAGATAAATGGAAGACTCTTGAACTTGTGAACTGAT AAGATAAGATAAATGGAAGACTCTTGAACTTGTGAACTGAT < 41bp 1 0.0639483489105394 1 0.0788148939609528 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040675 chrX:73040692 . . 0 4 hm5C_associated_SNPs_32362 0 0 1 1 73040691 73040710 lncRNA hsa-miR-3140-3p XIST miRanda starBase2
3496 chr14 75190037 75190037 1 + G T SARC 75190025 + 75190005 75190045 41 CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTA CTGAAATTGAGAAATTGGGGCAGAAGTATCGATTGGCTCTA < 41bp 1 0.749681206231147 1 0.206355422735214 experiment 0.500637587537705 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190025 chr14:75190037 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_32378 0 0 1 1 75190034 75190047 mRNA hsa-miR-182 FCF1 miRanda miRanda
3497 chr11 124502104 124502104 1 + A G SARC 124502089 + 124502069 124502109 41 GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCACAGGG GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCGCAGGG < 41bp 1 0.625019573823489 1 0.0816570818424225 experiment 0.749960852353023 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502089 chr11:124502104 synonymous SNV . 0 36 hm5C_associated_SNPs_32422 0 0 1 2 124502090 124502111 mRNA hsa-miR-10a TBRG1 miRanda miRanda
3498 chr11 124502104 124502104 1 + A G SARC 124502089 + 124502069 124502109 41 GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCACAGGG GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCGCAGGG < 41bp 1 0.625019573823489 1 0.0816570818424225 experiment 0.749960852353023 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502089 chr11:124502104 synonymous SNV . 0 36 hm5C_associated_SNPs_32422 0 0 1 2 124502090 124502111 mRNA hsa-miR-10b TBRG1 miRanda miRanda
3499 chr4 48835496 48835496 1 + G C SARC 48835494 + 48835474 48835514 41 AATGATGAAAGCTTCTGGTTCAGATGTGAGTTCAATTTTCT AATGATGAAAGCTTCTGGTTCACATGTGAGTTCAATTTTCT < 41bp 1 0.286962781247844 1 0.087748646736145 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835494 chr4:48835496 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_32479 0 0 1 3 48835486 48835498 mRNA hsa-miR-31 OCIAD1 miRanda miRanda
3500 chr4 48835496 48835496 1 + G C SARC 48835494 + 48835474 48835514 41 AATGATGAAAGCTTCTGGTTCAGATGTGAGTTCAATTTTCT AATGATGAAAGCTTCTGGTTCACATGTGAGTTCAATTTTCT < 41bp 1 0.286962781247844 1 0.087748646736145 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835494 chr4:48835496 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_32479 0 0 1 3 48835488 48835498 mRNA hsa-miR-124 OCIAD1 miRanda miRanda
3501 chr4 48835496 48835496 1 + G C SARC 48835494 + 48835474 48835514 41 AATGATGAAAGCTTCTGGTTCAGATGTGAGTTCAATTTTCT AATGATGAAAGCTTCTGGTTCACATGTGAGTTCAATTTTCT < 41bp 1 0.286962781247844 1 0.087748646736145 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835494 chr4:48835496 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_32479 0 0 1 3 48835488 48835498 mRNA hsa-miR-506 OCIAD1 miRanda miRanda
3502 chr17 80426696 80426696 1 + G T SARC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTTC < 41bp 1 0.53209412944471 1 0.43389105796814 experiment 0.935811741110579 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426696 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_32652 0 0 1 11 80426690 80426712 mRNA hsa-miR-15a NARF miRanda miRanda
3503 chr17 80426696 80426696 1 + G T SARC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTTC < 41bp 1 0.53209412944471 1 0.43389105796814 experiment 0.935811741110579 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426696 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_32652 0 0 1 11 80426694 80426712 mRNA hsa-miR-16 NARF miRanda miRanda
3504 chr17 80426696 80426696 1 + G T SARC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTTC < 41bp 1 0.53209412944471 1 0.43389105796814 experiment 0.935811741110579 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426696 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_32652 0 0 1 11 80426690 80426711 mRNA hsa-miR-103 NARF miRanda miRanda
3505 chr17 80426696 80426696 1 + G T SARC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTTC < 41bp 1 0.53209412944471 1 0.43389105796814 experiment 0.935811741110579 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426696 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_32652 0 0 1 11 80426690 80426711 mRNA hsa-miR-107 NARF miRanda miRanda
3506 chr17 80426696 80426696 1 + G T SARC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTTC < 41bp 1 0.53209412944471 1 0.43389105796814 experiment 0.935811741110579 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426696 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_32652 0 0 1 11 80426691 80426712 mRNA hsa-miR-15b NARF miRanda miRanda
3507 chr17 80426696 80426696 1 + G T SARC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTTC < 41bp 1 0.53209412944471 1 0.43389105796814 experiment 0.935811741110579 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426696 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_32652 0 0 1 11 80426682 80426701 mRNA hsa-miR-124 NARF miRanda miRanda
3508 chr17 80426696 80426696 1 + G T SARC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTTC < 41bp 1 0.53209412944471 1 0.43389105796814 experiment 0.935811741110579 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426696 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_32652 0 0 1 11 80426692 80426712 mRNA hsa-miR-195 NARF miRanda miRanda
3509 chr17 80426696 80426696 1 + G T SARC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTTC < 41bp 1 0.53209412944471 1 0.43389105796814 experiment 0.935811741110579 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426696 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_32652 0 0 1 11 80426691 80426712 mRNA hsa-miR-424 NARF miRanda miRanda
3510 chr17 80426696 80426696 1 + G T SARC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTTC < 41bp 1 0.53209412944471 1 0.43389105796814 experiment 0.935811741110579 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426696 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_32652 0 0 1 11 80426692 80426712 mRNA hsa-miR-497 NARF miRanda miRanda
3511 chr17 80426696 80426696 1 + G T SARC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTTC < 41bp 1 0.53209412944471 1 0.43389105796814 experiment 0.935811741110579 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426696 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_32652 0 0 1 11 80426690 80426712 mRNA hsa-miR-503 NARF miRanda miRanda
3512 chr17 80426696 80426696 1 + G T SARC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTTC < 41bp 1 0.53209412944471 1 0.43389105796814 experiment 0.935811741110579 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426696 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_32652 0 0 1 11 80426681 80426701 mRNA hsa-miR-506 NARF miRanda miRanda
3513 chr3 14487264 14487264 1 + G T SARC 14487265 + 14487245 14487285 41 TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT TTTATTTTCCTGTTTGGGATCGGCCTGCCTGTGTTTTTCTT < 41bp 1 0.304456362244892 1 0.397847712039948 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487265 chr3:14487264 nonsynonymous SNV 0.997 2 20 hm5C_associated_SNPs_32687 0 0 1 1 14487244 14487265 mRNA hsa-miR-150 SLC6A6 miRanda miRanda
3514 chr3 14487264 14487264 1 + G T SARC 14487269 + 14487249 14487289 41 TTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTTGGAG TTTTCCTGTTTGGGATCGGCCTGCCTGTGTTTTTCTTGGAG < 41bp 1 0.299671422292956 1 0.188096910715103 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487269 chr3:14487264 nonsynonymous SNV 0.997 2 16 hm5C_associated_SNPs_32688 0 0 1 1 14487244 14487265 mRNA hsa-miR-150 SLC6A6 miRanda miRanda
3515 chr11 125514418 125514418 1 + G T SARC 125514419 + 125514399 125514439 41 ACATGTAGAACCCCTGGCAGCGGTTGGTCAAAAGAATGACA ACATGTAGAACCCCTGGCATCGGTTGGTCAAAAGAATGACA < 41bp 1 0.215254660907357 1 0.308388948440552 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125514419 chr11:125514418 nonsynonymous SNV 0.996 4 20 hm5C_associated_SNPs_32703 0 0 1 1 125514418 125514442 mRNA hsa-miR-187 CHEK1 miRanda miRanda
3516 chr17 34147387 34147387 1 + G T SARC 34147392 + 34147372 34147412 41 AGCAGAGCTCATATAGCCAGCAACCATATAATAACCAGGGA AGCAGAGCTCATATATCCAGCAACCATATAATAACCAGGGA < 41bp 1 0.188546128199228 1 0.311992108821869 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34147392 chr17:34147387 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_32706 0 0 1 1 34147370 34147392 mRNA hsa-miR-149 TAF15 miRanda miRanda
3517 chr7 142457353 142457353 1 + C T SKCM 142457345 + 142457325 142457365 41 ACTCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTG ACTCTACCACCATGAATCCACTCCTGATTCTTACCTTTGTG < 41bp 1 0.233370918722789 1 0.0734342932701111 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457345 chr7:142457353 synonymous SNV . 0 29 hm5C_associated_SNPs_32798 0 0 0 1 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3518 chr7 142457353 142457353 1 + C T SKCM 142457347 + 142457327 142457367 41 TCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGC TCTACCACCATGAATCCACTCCTGATTCTTACCTTTGTGGC < 41bp 1 0.317950554029479 1 0.139533907175064 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457347 chr7:142457353 synonymous SNV . 0 27 hm5C_associated_SNPs_32799 0 0 0 1 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3519 chr7 142457353 142457353 1 + C T SKCM 142457348 + 142457328 142457368 41 CTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGCA CTACCACCATGAATCCACTCCTGATTCTTACCTTTGTGGCA < 41bp 1 0.139229835942781 1 0.207706451416016 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457348 chr7:142457353 synonymous SNV . 0 26 hm5C_associated_SNPs_32800 0 0 0 1 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3520 chr7 142457353 142457353 1 + C T SKCM 142457354 + 142457334 142457374 41 CCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCT CCATGAATCCACTCCTGATTCTTACCTTTGTGGCAGCTGCT < 41bp 1 0.0586589163518838 1 0.0637375712394714 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457354 chr7:142457353 synonymous SNV . 0 20 hm5C_associated_SNPs_32801 0 0 0 1 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3521 chr7 142457353 142457353 1 + C T SKCM 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG GAATCCACTCCTGATTCTTACCTTTGTGGCAGCTGCTCGTG < 41bp 1 0.0454477672343368 1 0.0181209146976471 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457353 synonymous SNV . 0 16 hm5C_associated_SNPs_32802 0 0 0 1 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3522 chr7 142457353 142457353 1 + C T SKCM 142457359 + 142457339 142457379 41 AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA AATCCACTCCTGATTCTTACCTTTGTGGCAGCTGCTCGTGA < 41bp 1 0.169642162208512 1 0.470254421234131 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457359 chr7:142457353 synonymous SNV . 0 15 hm5C_associated_SNPs_32803 0 0 0 1 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3523 chr7 142457353 142457353 1 + C T SKCM 142457367 + 142457347 142457387 41 CCTGATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATG CCTGATTCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATG < 41bp 1 0.291523848752559 1 0.213887184858322 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457367 chr7:142457353 synonymous SNV . 0 7 hm5C_associated_SNPs_32804 0 0 0 1 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3524 chr7 142457353 142457353 1 + C T SKCM 142457370 + 142457350 142457390 41 GATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC GATTCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC < 41bp 1 0.281005418548943 1 0.145838499069214 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457370 chr7:142457353 synonymous SNV . 0 4 hm5C_associated_SNPs_32805 0 0 0 1 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3525 chr7 142457353 142457353 1 + C T SKCM 142457373 + 142457353 142457393 41 CCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGC TCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGC < 41bp 1 0.554143586042823 1 0.169555604457855 experiment 0.891712827914354 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457373 chr7:142457353 synonymous SNV . 0 1 hm5C_associated_SNPs_32806 0 0 0 1 142457353 142457372 mRNA hsa-miR-22 PRSS2 miRanda miRanda
3526 chrX 73046480 73046480 1 - C T SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAAAACCCTAAAC < 41bp 1 0.65750013956348 1 0.628204226493835 experiment 0.684999720873041 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046480 . . 0 31 hm5C_associated_SNPs_32807 0 0 1 8 73046461 73046480 lncRNA hsa-let-7d-5p XIST miRanda starBase2
3527 chrX 73046480 73046480 1 - C T SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAAAACCCTAAAC < 41bp 1 0.65750013956348 1 0.628204226493835 experiment 0.684999720873041 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046480 . . 0 31 hm5C_associated_SNPs_32807 0 0 1 8 73046461 73046481 lncRNA hsa-let-7e-5p XIST miRanda starBase2
3528 chrX 73046480 73046480 1 - C T SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAAAACCCTAAAC < 41bp 1 0.65750013956348 1 0.628204226493835 experiment 0.684999720873041 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046480 . . 0 31 hm5C_associated_SNPs_32807 0 0 1 8 73046461 73046481 lncRNA hsa-let-7f-5p XIST miRanda starBase2
3529 chrX 73046480 73046480 1 - C T SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAAAACCCTAAAC < 41bp 1 0.65750013956348 1 0.628204226493835 experiment 0.684999720873041 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046480 . . 0 31 hm5C_associated_SNPs_32807 0 0 1 8 73046461 73046481 lncRNA hsa-let-7g-5p XIST miRanda starBase2
3530 chrX 73046480 73046480 1 - C T SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAAAACCCTAAAC < 41bp 1 0.65750013956348 1 0.628204226493835 experiment 0.684999720873041 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046480 . . 0 31 hm5C_associated_SNPs_32807 0 0 1 8 73046461 73046481 lncRNA hsa-let-7i-5p XIST miRanda starBase2
3531 chrX 73046480 73046480 1 - C T SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAAAACCCTAAAC < 41bp 1 0.65750013956348 1 0.628204226493835 experiment 0.684999720873041 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046480 . . 0 31 hm5C_associated_SNPs_32807 0 0 1 8 73046461 73046480 lncRNA hsa-miR-4458 XIST miRanda starBase2
3532 chrX 73046480 73046480 1 - C T SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAAAACCCTAAAC < 41bp 1 0.65750013956348 1 0.628204226493835 experiment 0.684999720873041 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046480 . . 0 31 hm5C_associated_SNPs_32807 0 0 1 8 73046461 73046482 lncRNA hsa-miR-98-5p XIST miRanda starBase2
3533 chrX 73046480 73046480 1 - C T SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAAAACCCTAAAC < 41bp 1 0.65750013956348 1 0.628204226493835 experiment 0.684999720873041 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046480 . . 0 31 hm5C_associated_SNPs_32807 0 0 1 8 73046467 73046487 lncRNA hsa-miR-629-5p XIST miRanda starBase2
3534 chr17 29325795 29325795 1 + G A SKCM 29325807 + 29325787 29325827 41 AGCTGTGAGAGGTTTTCTACCAGCCAGGTCTTATGTTCCCA AGCTGTGAAAGGTTTTCTACCAGCCAGGTCTTATGTTCCCA < 41bp 1 0.48909627671591 1 0.208471417427063 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF135 ENSG00000181481 CDS Human protein_coding chr17:29325807 chr17:29325795 synonymous SNV . 0 9 hm5C_associated_SNPs_32860 0 0 1 1 29325793 29325815 mRNA hsa-miR-370 RNF135 miRanda miRanda
3535 chr6 7594068 7594068 1 + C A SKCM 7594067 + 7594047 7594087 41 ATTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCAT ATTGAGGAAAATGGGCTATACAAAAGAAGAAGAGGTACCAT < 41bp 1 0.718384417637991 1 0.427308738231659 experiment 0.563231164724018 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594067 chr6:7594068 synonymous SNV . 0 22 hm5C_associated_SNPs_32882 0 0 1 2 7594050 7594073 mRNA hsa-miR-9 SNRNP48 miRanda miRanda
3536 chr6 7594068 7594068 1 + C A SKCM 7594067 + 7594047 7594087 41 ATTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCAT ATTGAGGAAAATGGGCTATACAAAAGAAGAAGAGGTACCAT < 41bp 1 0.718384417637991 1 0.427308738231659 experiment 0.563231164724018 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594067 chr6:7594068 synonymous SNV . 0 22 hm5C_associated_SNPs_32882 0 0 1 2 7594068 7594080 mRNA hsa-miR-181d SNRNP48 miRanda miRanda
3537 chr3 50005945 50005945 1 + C T SKCM 50005946 + 50005926 50005966 41 CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGT CTTTCAGAACAGCCAAAGTTCAGTTCAAGACCAAGATAAGT < 41bp 1 0.109558600356433 1 0.122590065002441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005946 chr3:50005945 nonsynonymous SNV 0.993 0 20 hm5C_associated_SNPs_32900 0 0 1 2 50005926 50005949 mRNA hsa-miR-378 RBM6 miRanda miRanda
3538 chr3 50005945 50005945 1 + C T SKCM 50005946 + 50005926 50005966 41 CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGT CTTTCAGAACAGCCAAAGTTCAGTTCAAGACCAAGATAAGT < 41bp 1 0.109558600356433 1 0.122590065002441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005946 chr3:50005945 nonsynonymous SNV 0.993 0 20 hm5C_associated_SNPs_32900 0 0 1 2 50005925 50005949 mRNA hsa-miR-422a RBM6 miRanda miRanda
3539 chr11 65269103 65269103 1 + T C SKCM 65269086 + 65269066 65269106 41 GCTATAGTACTATTGACAAACTGGGTTAGAGAAGGAGTGTA GCTATAGTACTATTGACAAACTGGGTTAGAGAAGGAGCGTA < 41bp 1 0.760308793167472 1 0.339613497257233 experiment 0.479382413665056 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269086 chr11:65269103 . . 0 38 hm5C_associated_SNPs_32949 0 0 1 1 65269083 65269105 lncRNA hsa-miR-483-3p MALAT1 miRanda starBase2
3540 chr11 65269103 65269103 1 + T C SKCM 65269107 + 65269087 65269127 41 TGGGTTAGAGAAGGAGTGTACCGCTGTGCTGTTGGCACGAA TGGGTTAGAGAAGGAGCGTACCGCTGTGCTGTTGGCACGAA < 41bp 1 0.479006619019069 1 0.190056413412094 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269107 chr11:65269103 . . 0 17 hm5C_associated_SNPs_32950 0 0 1 1 65269083 65269105 lncRNA hsa-miR-483-3p MALAT1 miRanda starBase2
3541 chr11 65269103 65269103 1 + T C SKCM 65269110 + 65269090 65269130 41 GTTAGAGAAGGAGTGTACCGCTGTGCTGTTGGCACGAACAC GTTAGAGAAGGAGCGTACCGCTGTGCTGTTGGCACGAACAC < 41bp 1 0.522479659342181 1 0.20936593413353 experiment 0.955040681315638 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269110 chr11:65269103 . . 0 14 hm5C_associated_SNPs_32951 0 0 1 1 65269083 65269105 lncRNA hsa-miR-483-3p MALAT1 miRanda starBase2
3542 chr11 65269103 65269103 1 + T C SKCM 65269115 + 65269095 65269135 41 AGAAGGAGTGTACCGCTGTGCTGTTGGCACGAACACCTTCA AGAAGGAGCGTACCGCTGTGCTGTTGGCACGAACACCTTCA < 41bp 1 0.345294216937071 1 0.116498619318008 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269115 chr11:65269103 . . 0 9 hm5C_associated_SNPs_32952 0 0 1 1 65269083 65269105 lncRNA hsa-miR-483-3p MALAT1 miRanda starBase2
3543 chr16 309980 309980 1 + C T SKCM 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG CTCTCTCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG < 41bp 1 0.585433238664908 1 0.0461578071117401 experiment 0.829133522670184 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:309980 nonsynonymous SNV 0.014 2 6 hm5C_associated_SNPs_32973 0 0 1 4 309968 309990 mRNA hsa-miR-18a ITFG3 miRanda miRanda
3544 chr16 309980 309980 1 + C T SKCM 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG CTCTCTCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG < 41bp 1 0.585433238664908 1 0.0461578071117401 experiment 0.829133522670184 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:309980 nonsynonymous SNV 0.014 2 6 hm5C_associated_SNPs_32973 0 0 1 4 309968 309981 mRNA hsa-miR-185 ITFG3 miRanda miRanda
3545 chr16 309980 309980 1 + C T SKCM 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG CTCTCTCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG < 41bp 1 0.585433238664908 1 0.0461578071117401 experiment 0.829133522670184 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:309980 nonsynonymous SNV 0.014 2 6 hm5C_associated_SNPs_32973 0 0 1 4 309975 309997 mRNA hsa-miR-130b ITFG3 miRanda miRanda
3546 chr16 309980 309980 1 + C T SKCM 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG CTCTCTCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG < 41bp 1 0.585433238664908 1 0.0461578071117401 experiment 0.829133522670184 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:309980 nonsynonymous SNV 0.014 2 6 hm5C_associated_SNPs_32973 0 0 1 4 309968 309990 mRNA hsa-miR-18b ITFG3 miRanda miRanda
3547 chrX 73046700 73046700 1 - C T SKCM 73046689 - 73046669 73046709 41 CTAAGAACTGAGACTTGTGACACAAGGCCAACGACCTAAGA CTAAGAACTAAGACTTGTGACACAAGGCCAACGACCTAAGA < 41bp 1 0.464820898637154 1 0.0910386443138123 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046689 chrX:73046700 . . 0 10 hm5C_associated_SNPs_33039 0 0 1 2 73046689 73046706 lncRNA hsa-miR-513b-5p XIST miRanda starBase2
3548 chrX 73046700 73046700 1 - C T SKCM 73046689 - 73046669 73046709 41 CTAAGAACTGAGACTTGTGACACAAGGCCAACGACCTAAGA CTAAGAACTAAGACTTGTGACACAAGGCCAACGACCTAAGA < 41bp 1 0.464820898637154 1 0.0910386443138123 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046689 chrX:73046700 . . 0 10 hm5C_associated_SNPs_33039 0 0 1 2 73046684 73046704 lncRNA hsa-miR-599 XIST miRanda starBase2
3549 chrX 73046700 73046700 1 - C T SKCM 73046709 - 73046689 73046729 41 GGACAGGACACATGGAAGGCCTAAGAACTGAGACTTGTGAC GGACAGGACACATGGAAGGCCTAAGAACTAAGACTTGTGAC < 41bp 1 0.280734789803574 1 0.410710364580154 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046709 chrX:73046700 . . 0 30 hm5C_associated_SNPs_33040 0 0 1 2 73046689 73046706 lncRNA hsa-miR-513b-5p XIST miRanda starBase2
3550 chrX 73046700 73046700 1 - C T SKCM 73046709 - 73046689 73046729 41 GGACAGGACACATGGAAGGCCTAAGAACTGAGACTTGTGAC GGACAGGACACATGGAAGGCCTAAGAACTAAGACTTGTGAC < 41bp 1 0.280734789803574 1 0.410710364580154 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046709 chrX:73046700 . . 0 30 hm5C_associated_SNPs_33040 0 0 1 2 73046684 73046704 lncRNA hsa-miR-599 XIST miRanda starBase2
3551 chr1 11718602 11718602 1 + G A SKCM 11718593 + 11718573 11718613 41 CCTCTGCCTGCCCCCAGCACCTGCCTCAAGTCCCAGGTGGT CCTCTGCCTGCCCCCAGCACCTGCCTCAAATCCCAGGTGGT < 41bp 1 0.245527510348091 1 0.111568033695221 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718593 chr1:11718602 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_33066 0 0 1 2 11718589 11718609 mRNA hsa-miR-378 FBXO44 miRanda miRanda
3552 chr1 11718602 11718602 1 + G A SKCM 11718593 + 11718573 11718613 41 CCTCTGCCTGCCCCCAGCACCTGCCTCAAGTCCCAGGTGGT CCTCTGCCTGCCCCCAGCACCTGCCTCAAATCCCAGGTGGT < 41bp 1 0.245527510348091 1 0.111568033695221 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718593 chr1:11718602 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_33066 0 0 1 2 11718588 11718609 mRNA hsa-miR-422a FBXO44 miRanda miRanda
3553 chr14 60591538 60591538 1 + C T SKCM 60591543 + 60591523 60591563 41 AGTTCTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG AGTTCTATTAGGATATCCTGCTGTTGACAAAGGAAAACAAG < 41bp 1 0.200252030159915 1 0.23190501332283 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591543 chr14:60591538 synonymous SNV . 0 16 hm5C_associated_SNPs_33085 0 0 1 3 60591525 60591546 mRNA hsa-miR-214 C14orf135 miRanda miRanda
3554 chr14 60591538 60591538 1 + C T SKCM 60591543 + 60591523 60591563 41 AGTTCTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG AGTTCTATTAGGATATCCTGCTGTTGACAAAGGAAAACAAG < 41bp 1 0.200252030159915 1 0.23190501332283 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591543 chr14:60591538 synonymous SNV . 0 16 hm5C_associated_SNPs_33085 0 0 1 3 60591532 60591551 mRNA hsa-miR-505 C14orf135 miRanda miRanda
3555 chr14 60591538 60591538 1 + C T SKCM 60591543 + 60591523 60591563 41 AGTTCTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG AGTTCTATTAGGATATCCTGCTGTTGACAAAGGAAAACAAG < 41bp 1 0.200252030159915 1 0.23190501332283 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591543 chr14:60591538 synonymous SNV . 0 16 hm5C_associated_SNPs_33085 0 0 1 3 60591522 60591550 mRNA hsa-miR-421 C14orf135 miRanda miRanda
3556 chrX 73046579 73046579 1 - C T SKCM 73046568 - 73046548 73046588 41 GACCCAAGCGAAAAAGGTATCTCAAGACTAACGGCCGGAAT GACCCAAGCAAAAAAGGTATCTCAAGACTAACGGCCGGAAT < 41bp 1 0.678380056313535 1 0.677143096923828 experiment 0.643239887372929 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046568 chrX:73046579 . . 0 10 hm5C_associated_SNPs_33309 0 0 1 1 73046561 73046582 lncRNA hsa-miR-526b-5p XIST miRanda starBase2
3557 chrX 73046579 73046579 1 - C T SKCM 73046585 - 73046565 73046605 41 TACCTAGATGGATAGAGGACCCAAGCGAAAAAGGTATCTCA TACCTAGATGGATAGAGGACCCAAGCAAAAAAGGTATCTCA < 41bp 1 0.093930753273782 1 0.176983952522278 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046585 chrX:73046579 . . 0 27 hm5C_associated_SNPs_33310 0 0 1 1 73046561 73046582 lncRNA hsa-miR-526b-5p XIST miRanda starBase2
3558 chr21 42769547 42769547 1 + C T SKCM 42769560 + 42769540 42769580 41 AGTTCTCCTGGAGGAGGGGTCAGCCACGGTTCCCCGACTGG AGTTCTCTTGGAGGAGGGGTCAGCCACGGTTCCCCGACTGG < 41bp 1 0.311030957638168 1 0.599059820175171 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MX2 ENSG00000183486 CDS Human protein_coding chr21:42769560 chr21:42769547 synonymous SNV . 0 8 hm5C_associated_SNPs_33318 0 0 0 2 42769540 42769547 mRNA hsa-miR-146a MX2 miRanda miRanda
3559 chr21 42769547 42769547 1 + C T SKCM 42769560 + 42769540 42769580 41 AGTTCTCCTGGAGGAGGGGTCAGCCACGGTTCCCCGACTGG AGTTCTCTTGGAGGAGGGGTCAGCCACGGTTCCCCGACTGG < 41bp 1 0.311030957638168 1 0.599059820175171 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MX2 ENSG00000183486 CDS Human protein_coding chr21:42769560 chr21:42769547 synonymous SNV . 0 8 hm5C_associated_SNPs_33318 0 0 0 2 42769540 42769547 mRNA hsa-miR-146b-5p MX2 miRanda miRanda
3560 chr11 65267924 65267924 1 + C T SKCM 65267931 + 65267911 65267951 41 AGCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGG AGCAGACAGGATTTCAGGAACCAGTGTTTGATGAAGCTAGG < 41bp 1 0.348393834458189 1 0.3803830742836 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267931 chr11:65267924 . . 0 14 hm5C_associated_SNPs_33324 0 0 1 2 65267916 65267939 lncRNA hsa-miR-141-3p MALAT1 miRanda starBase2
3561 chr11 65267924 65267924 1 + C T SKCM 65267931 + 65267911 65267951 41 AGCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGG AGCAGACAGGATTTCAGGAACCAGTGTTTGATGAAGCTAGG < 41bp 1 0.348393834458189 1 0.3803830742836 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267931 chr11:65267924 . . 0 14 hm5C_associated_SNPs_33324 0 0 1 2 65267915 65267939 lncRNA hsa-miR-200a-3p MALAT1 miRanda starBase2
3562 chr11 65267924 65267924 1 + C T SKCM 65267932 + 65267912 65267952 41 GCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGGA GCAGACAGGATTTCAGGAACCAGTGTTTGATGAAGCTAGGA < 41bp 1 0.666654639767472 1 0.338794708251953 experiment 0.666690720465057 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267932 chr11:65267924 . . 0 13 hm5C_associated_SNPs_33325 0 0 1 2 65267916 65267939 lncRNA hsa-miR-141-3p MALAT1 miRanda starBase2
3563 chr11 65267924 65267924 1 + C T SKCM 65267932 + 65267912 65267952 41 GCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGGA GCAGACAGGATTTCAGGAACCAGTGTTTGATGAAGCTAGGA < 41bp 1 0.666654639767472 1 0.338794708251953 experiment 0.666690720465057 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267932 chr11:65267924 . . 0 13 hm5C_associated_SNPs_33325 0 0 1 2 65267915 65267939 lncRNA hsa-miR-200a-3p MALAT1 miRanda starBase2
3564 chr10 12191686 12191686 1 + A T SKCM 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATTCACCGAAAGATAGAGCTTTAT < 41bp 1 0.585274674608275 1 0.0524718761444092 experiment 0.82945065078345 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191686 nonsynonymous SNV 0.999 1 20 hm5C_associated_SNPs_33385 0 0 1 2 12191685 12191706 mRNA hsa-miR-320a SEC61A2 miRanda miRanda
3565 chr10 12191686 12191686 1 + A T SKCM 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATTCACCGAAAGATAGAGCTTTAT < 41bp 1 0.585274674608275 1 0.0524718761444092 experiment 0.82945065078345 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191686 nonsynonymous SNV 0.999 1 20 hm5C_associated_SNPs_33385 0 0 1 2 12191685 12191706 mRNA hsa-miR-320b SEC61A2 miRanda miRanda
3566 chrX 73040680 73040680 1 - C T SKCM 73040667 - 73040647 73040687 41 ATAAATGGAAGACTCTTGAACTTGTGAACTGATGTGAAATG ATAAATGAAAGACTCTTGAACTTGTGAACTGATGTGAAATG < 41bp 1 0.086442787231144 1 0.0445093214511871 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040667 chrX:73040680 . . 0 8 hm5C_associated_SNPs_33500 0 0 1 1 73040660 73040683 lncRNA hsa-miR-513b-5p XIST miRanda starBase2
3567 chrX 73040680 73040680 1 - C T SKCM 73040673 - 73040653 73040693 41 GCTAAGATAAATGGAAGACTCTTGAACTTGTGAACTGATGT GCTAAGATAAATGAAAGACTCTTGAACTTGTGAACTGATGT < 41bp 1 0.282926647804644 1 0.574378848075867 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040673 chrX:73040680 . . 0 14 hm5C_associated_SNPs_33501 0 0 1 1 73040660 73040683 lncRNA hsa-miR-513b-5p XIST miRanda starBase2
3568 chrX 73040680 73040680 1 - C T SKCM 73040675 - 73040655 73040695 41 AAGCTAAGATAAATGGAAGACTCTTGAACTTGTGAACTGAT AAGCTAAGATAAATGAAAGACTCTTGAACTTGTGAACTGAT < 41bp 1 0.0652967153062086 1 0.173746675252914 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040675 chrX:73040680 . . 0 16 hm5C_associated_SNPs_33502 0 0 1 1 73040660 73040683 lncRNA hsa-miR-513b-5p XIST miRanda starBase2
3569 chr13 52604978 52604978 1 + C T SKCM 52604967 + 52604947 52604987 41 TGAGAAGCGCAACATCCACGCAGCAGCTCATCAGGTACAAG TGAGAAGCGCAACATCCACGCAGCAGCTCATTAGGTACAAG < 41bp 1 0.626229487672807 1 0.275622367858887 experiment 0.747541024654385 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP14C ENSG00000253797 CDS Human protein_coding chr13:52604967 chr13:52604978 stopgain 0.301 1 32 hm5C_associated_SNPs_33535 0 0 1 1 52604973 52604995 mRNA hsa-miR-7 ALG11 miRanda miRanda
3570 chr13 52604978 52604978 1 + C T SKCM 52604970 + 52604950 52604990 41 GAAGCGCAACATCCACGCAGCAGCTCATCAGGTACAAGTGC GAAGCGCAACATCCACGCAGCAGCTCATTAGGTACAAGTGC < 41bp 1 0.155766704723452 1 0.064655989408493 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP14C ENSG00000253797 CDS Human protein_coding chr13:52604970 chr13:52604978 stopgain 0.301 1 29 hm5C_associated_SNPs_33536 0 0 1 1 52604973 52604995 mRNA hsa-miR-7 ALG11 miRanda miRanda
3571 chr5 73989524 73989524 1 + T A SKCM 73989526 + 73989506 73989546 41 ACAGAGTTTGGGGAGCATTACGAGGTAAGTTCCATGCAGTT ACAGAGTTTGGGGAGCATAACGAGGTAAGTTCCATGCAGTT < 41bp 1 0.683207673845458 1 0.84485936164856 experiment 0.633584652309084 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HEXB ENSG00000049860 CDS Human protein_coding chr5:73989526 chr5:73989524 stopgain 0.998 1 19 hm5C_associated_SNPs_33546 0 0 1 1 73989504 73989526 mRNA hsa-miR-155 HEXB miRanda miRanda
3572 chr8 48874103 48874103 1 + C T SKCM 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATGCCAGGTCATCTCTCTCTCAGAGACGTAGAGGCGA < 41bp 1 0.205658467314601 1 0.199394941329956 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874103 nonsynonymous SNV 0.009 2 20 hm5C_associated_SNPs_33563 0 0 1 1 48874083 48874103 mRNA hsa-miR-143 MCM4 miRanda miRanda
3573 chr14 76112819 76112819 1 + G A SKCM 76112807 + 76112787 76112827 41 CCACTGCTGTGTCAGAGGATCATCTCTGAGAGGAAGGTGGT CCACTGCTGTGTCAGAGGATCATCTCTGAGAGAAAGGTGGT < 41bp 1 0.116938744602964 1 0.0667169094085693 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76112807 chr14:76112819 nonsynonymous SNV 0.261 1 33 hm5C_associated_SNPs_33692 0 0 0 3 76112816 76112830 mRNA hsa-miR-197 FLVCR2 miRanda miRanda
3574 chr14 76112819 76112819 1 + G A SKCM 76112807 + 76112787 76112827 41 CCACTGCTGTGTCAGAGGATCATCTCTGAGAGGAAGGTGGT CCACTGCTGTGTCAGAGGATCATCTCTGAGAGAAAGGTGGT < 41bp 1 0.116938744602964 1 0.0667169094085693 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76112807 chr14:76112819 nonsynonymous SNV 0.261 1 33 hm5C_associated_SNPs_33692 0 0 0 3 76112816 76112840 mRNA hsa-miR-125b FLVCR2 miRanda miRanda
3575 chr14 76112819 76112819 1 + G A SKCM 76112807 + 76112787 76112827 41 CCACTGCTGTGTCAGAGGATCATCTCTGAGAGGAAGGTGGT CCACTGCTGTGTCAGAGGATCATCTCTGAGAGAAAGGTGGT < 41bp 1 0.116938744602964 1 0.0667169094085693 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76112807 chr14:76112819 nonsynonymous SNV 0.261 1 33 hm5C_associated_SNPs_33692 0 0 0 3 76112817 76112840 mRNA hsa-miR-125a-5p FLVCR2 miRanda miRanda
3576 chr1 150445119 150445119 1 + C T SKCM 150445130 + 150445110 150445150 41 GAGATGCACCCACTCATCTACCCTCTGTGGATCTTTCGAAC GAGATGCACTCACTCATCTACCCTCTGTGGATCTTTCGAAC < 41bp 1 0.0306576172487752 1 0.0420497357845306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPRD2 ENSG00000163125 CDS Human protein_coding chr1:150445130 chr1:150445119 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_33726 0 0 1 2 150445113 150445135 mRNA hsa-let-7b RPRD2 miRanda miRanda
3577 chr1 150445119 150445119 1 + C T SKCM 150445130 + 150445110 150445150 41 GAGATGCACCCACTCATCTACCCTCTGTGGATCTTTCGAAC GAGATGCACTCACTCATCTACCCTCTGTGGATCTTTCGAAC < 41bp 1 0.0306576172487752 1 0.0420497357845306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPRD2 ENSG00000163125 CDS Human protein_coding chr1:150445130 chr1:150445119 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_33726 0 0 1 2 150445111 150445135 mRNA hsa-let-7i RPRD2 miRanda miRanda
3578 chr9 127982863 127982863 1 + C T SKCM 127982849 + 127982829 127982869 41 TGGACCACGCCAGAAGTGACCAGCCCCCCACCATCCCCAAG TGGACCACGCCAGAAGTGACCAGCCCCCCACCATTCCCAAG < 41bp 1 0.630753347752966 1 0.674006879329681 experiment 0.738493304494069 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RABEPK ENSG00000136933 CDS Human protein_coding chr9:127982849 chr9:127982863 nonsynonymous SNV 0.950 3 35 hm5C_associated_SNPs_33742 0 0 0 3 127982857 127982878 mRNA hsa-miR-1 RABEPK miRanda miRanda
3579 chr9 127982863 127982863 1 + C T SKCM 127982849 + 127982829 127982869 41 TGGACCACGCCAGAAGTGACCAGCCCCCCACCATCCCCAAG TGGACCACGCCAGAAGTGACCAGCCCCCCACCATTCCCAAG < 41bp 1 0.630753347752966 1 0.674006879329681 experiment 0.738493304494069 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RABEPK ENSG00000136933 CDS Human protein_coding chr9:127982849 chr9:127982863 nonsynonymous SNV 0.950 3 35 hm5C_associated_SNPs_33742 0 0 0 3 127982857 127982878 mRNA hsa-miR-206 RABEPK miRanda miRanda
3580 chr9 127982863 127982863 1 + C T SKCM 127982849 + 127982829 127982869 41 TGGACCACGCCAGAAGTGACCAGCCCCCCACCATCCCCAAG TGGACCACGCCAGAAGTGACCAGCCCCCCACCATTCCCAAG < 41bp 1 0.630753347752966 1 0.674006879329681 experiment 0.738493304494069 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RABEPK ENSG00000136933 CDS Human protein_coding chr9:127982849 chr9:127982863 nonsynonymous SNV 0.950 3 35 hm5C_associated_SNPs_33742 0 0 0 3 127982859 127982878 mRNA hsa-miR-613 RABEPK miRanda miRanda
3581 chr12 107237704 107237704 1 + C T SKCM 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCCCATCGAAACATTCGAAAATTTCTCAAAGA < 41bp 1 0.072561605488153 1 0.274057894945145 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237704 synonymous SNV . 0 24 hm5C_associated_SNPs_33820 0 0 0 1 107237698 107237717 mRNA hsa-miR-539 RIC8B miRanda miRanda
3582 chr12 54675591 54675591 1 + C T SKCM 54675598 + 54675578 54675618 41 GGTAATGAGAGATCCAAACACCAAGCGCTCCAGGGGCTTTG GGTAATGAGAGATTCAAACACCAAGCGCTCCAGGGGCTTTG < 41bp 1 0.350568151337861 1 0.298795104026794 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675598 chr12:54675591 nonsynonymous SNV 0.996 4 14 hm5C_associated_SNPs_33832 0 0 1 1 54675582 54675604 mRNA hsa-miR-138 HNRNPA1 miRanda miRanda
3583 chr12 54675591 54675591 1 + C T SKCM 54675599 + 54675579 54675619 41 GTAATGAGAGATCCAAACACCAAGCGCTCCAGGGGCTTTGG GTAATGAGAGATTCAAACACCAAGCGCTCCAGGGGCTTTGG < 41bp 1 0.526009274669629 1 0.182909071445465 experiment 0.947981450660743 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675599 chr12:54675591 nonsynonymous SNV 0.996 4 13 hm5C_associated_SNPs_33833 0 0 1 1 54675582 54675604 mRNA hsa-miR-138 HNRNPA1 miRanda miRanda
3584 chr2 29344298 29344298 1 + C T SKCM 29344282 + 29344262 29344302 41 TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTG TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCTTTTG < 41bp 1 0.0653890283109053 1 0.0650585293769836 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29344282 chr2:29344298 nonsynonymous SNV 0.642 1 37 hm5C_associated_SNPs_34132 0 0 1 1 29344278 29344299 mRNA hsa-miR-876-5p CLIP4 miRanda miRanda
3585 chr17 53852193 53852193 1 + G T SKCM 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCGATAACCCGGGTGGCCAAATTCCTTCCTGGCTCATT < 41bp 1 0.291017633032734 1 0.187031686306 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852193 synonymous SNV . 0 29 hm5C_associated_SNPs_34143 0 0 1 1 53852176 53852197 mRNA hsa-miR-184 PCTP miRanda miRanda
3586 chr12 54675959 54675959 1 + G A SKCM 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAAAGATTATTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.611532862713796 1 0.225188553333282 experiment 0.776934274572408 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675959 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_34184 0 0 0 4 54675944 54675965 mRNA hsa-miR-216a HNRNPA1 miRanda miRanda
3587 chr12 54675959 54675959 1 + G A SKCM 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAAAGATTATTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.611532862713796 1 0.225188553333282 experiment 0.776934274572408 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675959 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_34184 0 0 0 4 54675956 54675980 mRNA hsa-miR-200c HNRNPA1 miRanda miRanda
3588 chr12 54675959 54675959 1 + G A SKCM 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAAAGATTATTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.611532862713796 1 0.225188553333282 experiment 0.776934274572408 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675959 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_34184 0 0 0 4 54675959 54675980 mRNA hsa-miR-429 HNRNPA1 miRanda miRanda
3589 chr12 54675959 54675959 1 + G A SKCM 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAAAGATTATTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.611532862713796 1 0.225188553333282 experiment 0.776934274572408 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675959 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_34184 0 0 0 4 54675946 54675965 mRNA hsa-miR-216b HNRNPA1 miRanda miRanda
3590 chr20 44522638 44522638 1 + C T SKCM 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTTGGTCTTTTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.156863241222108 1 0.933194637298584 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522638 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_34215 0 0 1 3 44522638 44522659 mRNA hsa-miR-15b CTSA miRanda miRanda
3591 chr20 44522638 44522638 1 + C T SKCM 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTTGGTCTTTTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.156863241222108 1 0.933194637298584 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522638 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_34215 0 0 1 3 44522627 44522644 mRNA hsa-miR-185 CTSA miRanda miRanda
3592 chr20 44522638 44522638 1 + C T SKCM 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTTGGTCTTTTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.156863241222108 1 0.933194637298584 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522638 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_34215 0 0 1 3 44522638 44522659 mRNA hsa-miR-424 CTSA miRanda miRanda
3593 chr20 44522642 44522642 1 + C T SKCM 44522640 + 44522620 44522660 41 CCTACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCT CCTACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCT < 41bp 1 0.742657586300157 1 0.848130941390991 experiment 0.514684827399686 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522640 chr20:44522642 synonymous SNV . 0 23 hm5C_associated_SNPs_34221 0 0 1 7 44522641 44522659 mRNA hsa-miR-15a CTSA miRanda miRanda
3594 chr20 44522642 44522642 1 + C T SKCM 44522640 + 44522620 44522660 41 CCTACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCT CCTACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCT < 41bp 1 0.742657586300157 1 0.848130941390991 experiment 0.514684827399686 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522640 chr20:44522642 synonymous SNV . 0 23 hm5C_associated_SNPs_34221 0 0 1 7 44522640 44522659 mRNA hsa-miR-16 CTSA miRanda miRanda
3595 chr20 44522642 44522642 1 + C T SKCM 44522640 + 44522620 44522660 41 CCTACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCT CCTACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCT < 41bp 1 0.742657586300157 1 0.848130941390991 experiment 0.514684827399686 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522640 chr20:44522642 synonymous SNV . 0 23 hm5C_associated_SNPs_34221 0 0 1 7 44522638 44522659 mRNA hsa-miR-15b CTSA miRanda miRanda
3596 chr20 44522642 44522642 1 + C T SKCM 44522640 + 44522620 44522660 41 CCTACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCT CCTACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCT < 41bp 1 0.742657586300157 1 0.848130941390991 experiment 0.514684827399686 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522640 chr20:44522642 synonymous SNV . 0 23 hm5C_associated_SNPs_34221 0 0 1 7 44522627 44522644 mRNA hsa-miR-185 CTSA miRanda miRanda
3597 chr20 44522642 44522642 1 + C T SKCM 44522640 + 44522620 44522660 41 CCTACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCT CCTACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCT < 41bp 1 0.742657586300157 1 0.848130941390991 experiment 0.514684827399686 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522640 chr20:44522642 synonymous SNV . 0 23 hm5C_associated_SNPs_34221 0 0 1 7 44522639 44522659 mRNA hsa-miR-195 CTSA miRanda miRanda
3598 chr20 44522642 44522642 1 + C T SKCM 44522640 + 44522620 44522660 41 CCTACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCT CCTACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCT < 41bp 1 0.742657586300157 1 0.848130941390991 experiment 0.514684827399686 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522640 chr20:44522642 synonymous SNV . 0 23 hm5C_associated_SNPs_34221 0 0 1 7 44522638 44522659 mRNA hsa-miR-424 CTSA miRanda miRanda
3599 chr20 44522642 44522642 1 + C T SKCM 44522640 + 44522620 44522660 41 CCTACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCT CCTACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCT < 41bp 1 0.742657586300157 1 0.848130941390991 experiment 0.514684827399686 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522640 chr20:44522642 synonymous SNV . 0 23 hm5C_associated_SNPs_34221 0 0 1 7 44522642 44522659 mRNA hsa-miR-497 CTSA miRanda miRanda
3600 chr20 44522642 44522642 1 + C T SKCM 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCTCAA < 41bp 1 0.184396073043789 1 0.918181657791138 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522642 synonymous SNV . 0 20 hm5C_associated_SNPs_34222 0 0 1 7 44522641 44522659 mRNA hsa-miR-15a CTSA miRanda miRanda
3601 chr20 44522642 44522642 1 + C T SKCM 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCTCAA < 41bp 1 0.184396073043789 1 0.918181657791138 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522642 synonymous SNV . 0 20 hm5C_associated_SNPs_34222 0 0 1 7 44522640 44522659 mRNA hsa-miR-16 CTSA miRanda miRanda
3602 chr20 44522642 44522642 1 + C T SKCM 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCTCAA < 41bp 1 0.184396073043789 1 0.918181657791138 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522642 synonymous SNV . 0 20 hm5C_associated_SNPs_34222 0 0 1 7 44522638 44522659 mRNA hsa-miR-15b CTSA miRanda miRanda
3603 chr20 44522642 44522642 1 + C T SKCM 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCTCAA < 41bp 1 0.184396073043789 1 0.918181657791138 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522642 synonymous SNV . 0 20 hm5C_associated_SNPs_34222 0 0 1 7 44522627 44522644 mRNA hsa-miR-185 CTSA miRanda miRanda
3604 chr20 44522642 44522642 1 + C T SKCM 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCTCAA < 41bp 1 0.184396073043789 1 0.918181657791138 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522642 synonymous SNV . 0 20 hm5C_associated_SNPs_34222 0 0 1 7 44522639 44522659 mRNA hsa-miR-195 CTSA miRanda miRanda
3605 chr20 44522642 44522642 1 + C T SKCM 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCTCAA < 41bp 1 0.184396073043789 1 0.918181657791138 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522642 synonymous SNV . 0 20 hm5C_associated_SNPs_34222 0 0 1 7 44522638 44522659 mRNA hsa-miR-424 CTSA miRanda miRanda
3606 chr20 44522642 44522642 1 + C T SKCM 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCTCAA < 41bp 1 0.184396073043789 1 0.918181657791138 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522642 synonymous SNV . 0 20 hm5C_associated_SNPs_34222 0 0 1 7 44522642 44522659 mRNA hsa-miR-497 CTSA miRanda miRanda
3607 chr11 65271690 65271690 1 + G A SKCM 65271692 + 65271672 65271712 41 GTTCTAGTGAGTGTATGAGACCTTGCAGTGAGTTTATCAGC GTTCTAGTGAGTGTATGAAACCTTGCAGTGAGTTTATCAGC < 41bp 1 0.149277378390651 1 0.133104503154755 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271692 chr11:65271690 . . 0 19 hm5C_associated_SNPs_34260 0 0 1 2 65271669 65271690 lncRNA hsa-miR-485-3p MALAT1 miRanda starBase2
3608 chr11 65271690 65271690 1 + G A SKCM 65271692 + 65271672 65271712 41 GTTCTAGTGAGTGTATGAGACCTTGCAGTGAGTTTATCAGC GTTCTAGTGAGTGTATGAAACCTTGCAGTGAGTTTATCAGC < 41bp 1 0.149277378390651 1 0.133104503154755 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271692 chr11:65271690 . . 0 19 hm5C_associated_SNPs_34260 0 0 1 2 65271669 65271690 lncRNA hsa-miR-539-3p MALAT1 miRanda starBase2
3609 chr11 65273607 65273607 1 + C T SKCM 65273608 + 65273588 65273628 41 GATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTTC GATGCTGGTGGTTGGCACTTCTGGTTTCCAGGACGGGGTTC < 41bp 1 0.651433135642443 1 0.471197247505188 experiment 0.697133728715113 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273608 chr11:65273607 . . 0 20 hm5C_associated_SNPs_34286 0 0 0 2 65273604 65273625 lncRNA hsa-miR-1247-5p MALAT1 miRanda starBase2
3610 chr11 65273607 65273607 1 + C T SKCM 65273608 + 65273588 65273628 41 GATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTTC GATGCTGGTGGTTGGCACTTCTGGTTTCCAGGACGGGGTTC < 41bp 1 0.651433135642443 1 0.471197247505188 experiment 0.697133728715113 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273608 chr11:65273607 . . 0 20 hm5C_associated_SNPs_34286 0 0 0 2 65273592 65273612 lncRNA hsa-miR-665 MALAT1 miRanda starBase2
3611 chr21 33785321 33785321 1 + G T SKCM 33785319 + 33785299 33785339 41 CTCAGCGCTCACCGACTTCTCTGGTAAGAGCGCCCTCCCTG CTCAGCGCTCACCGACTTCTCTTGTAAGAGCGCCCTCCCTG < 41bp 1 0.534625035005064 1 0.11529666185379 experiment 0.930749929989872 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33785319 chr21:33785321 stopgain 0.999 4 23 hm5C_associated_SNPs_34328 0 0 0 3 33785303 33785321 mRNA hsa-miR-361-5p C21orf63 miRanda miRanda
3612 chr21 33785321 33785321 1 + G T SKCM 33785319 + 33785299 33785339 41 CTCAGCGCTCACCGACTTCTCTGGTAAGAGCGCCCTCCCTG CTCAGCGCTCACCGACTTCTCTTGTAAGAGCGCCCTCCCTG < 41bp 1 0.534625035005064 1 0.11529666185379 experiment 0.930749929989872 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33785319 chr21:33785321 stopgain 0.999 4 23 hm5C_associated_SNPs_34328 0 0 0 3 33785303 33785321 mRNA hsa-miR-383 C21orf63 miRanda miRanda
3613 chr21 33785321 33785321 1 + G T SKCM 33785319 + 33785299 33785339 41 CTCAGCGCTCACCGACTTCTCTGGTAAGAGCGCCCTCCCTG CTCAGCGCTCACCGACTTCTCTTGTAAGAGCGCCCTCCCTG < 41bp 1 0.534625035005064 1 0.11529666185379 experiment 0.930749929989872 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33785319 chr21:33785321 stopgain 0.999 4 23 hm5C_associated_SNPs_34328 0 0 0 3 33785321 33785321 mRNA hsa-miR-544 C21orf63 miRanda miRanda
3614 chr10 101515430 101515430 1 + C T SKCM 101515429 + 101515409 101515449 41 ACTTTCTTGCTCAGAATATTCCCTAAAGGTAACAGATGTGA ACTTTCTTGCTCAGAATATTCTCTAAAGGTAACAGATGTGA < 41bp 1 0.692140085717237 1 0.533868074417114 experiment 0.615719828565525 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUTC ENSG00000119929 CDS Human protein_coding chr10:101515429 chr10:101515430 synonymous SNV . 0 22 hm5C_associated_SNPs_34348 0 0 1 2 101515430 101515450 mRNA hsa-miR-23a CUTC miRanda miRanda
3615 chr10 101515430 101515430 1 + C T SKCM 101515429 + 101515409 101515449 41 ACTTTCTTGCTCAGAATATTCCCTAAAGGTAACAGATGTGA ACTTTCTTGCTCAGAATATTCTCTAAAGGTAACAGATGTGA < 41bp 1 0.692140085717237 1 0.533868074417114 experiment 0.615719828565525 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUTC ENSG00000119929 CDS Human protein_coding chr10:101515429 chr10:101515430 synonymous SNV . 0 22 hm5C_associated_SNPs_34348 0 0 1 2 101515423 101515450 mRNA hsa-miR-23b CUTC miRanda miRanda
3616 chr14 105175702 105175702 1 + C T SKCM 105175682 + 105175662 105175702 41 CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTC CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTT < 41bp 1 0.461138607712066 1 0.812896728515625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105175682 chr14:105175702 synonymous SNV . 0 41 hm5C_associated_SNPs_34376 0 0 1 2 105175682 105175705 mRNA hsa-miR-28-5p INF2 miRanda miRanda
3617 chr14 105175702 105175702 1 + C T SKCM 105175682 + 105175662 105175702 41 CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTC CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTT < 41bp 1 0.461138607712066 1 0.812896728515625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105175682 chr14:105175702 synonymous SNV . 0 41 hm5C_associated_SNPs_34376 0 0 1 2 105175683 105175705 mRNA hsa-miR-708 INF2 miRanda miRanda
3618 chr2 74154162 74154162 1 + C T SKCM 74154149 + 74154129 74154169 41 GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAA GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTTCATCGAA < 41bp 1 0.660392244147249 1 0.245358109474182 experiment 0.679215511705502 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154149 chr2:74154162 nonsynonymous SNV 0.990 5 34 hm5C_associated_SNPs_34377 0 0 1 1 74154156 74154178 mRNA hsa-miR-455-5p DGUOK miRanda miRanda
3619 chr2 74154162 74154162 1 + C T SKCM 74154151 + 74154131 74154171 41 CTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGG CTGCACGCGGGGCGCGGGCCCCGAAGGCTCTTCATCGAAGG < 41bp 1 0.772466251604358 1 0.501109004020691 experiment 0.455067496791283 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154151 chr2:74154162 nonsynonymous SNV 0.990 5 32 hm5C_associated_SNPs_34378 0 0 1 1 74154156 74154178 mRNA hsa-miR-455-5p DGUOK miRanda miRanda
3620 chr2 74154162 74154162 1 + C T SKCM 74154152 + 74154132 74154172 41 TGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGGC TGCACGCGGGGCGCGGGCCCCGAAGGCTCTTCATCGAAGGC < 41bp 1 0.726858837164629 1 0.726097583770752 experiment 0.546282325670742 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154152 chr2:74154162 nonsynonymous SNV 0.990 5 31 hm5C_associated_SNPs_34379 0 0 1 1 74154156 74154178 mRNA hsa-miR-455-5p DGUOK miRanda miRanda
3621 chr1 109643057 109643057 1 + C T SKCM 109643037 + 109643017 109643057 41 CCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCTCCTC CCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCTCCTT < 41bp 1 0.672261336915193 1 0.209209769964218 experiment 0.655477326169615 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643037 chr1:109643057 . . 0 41 hm5C_associated_SNPs_34432 0 0 1 2 109643038 109643058 lncRNA hsa-miR-3150b-3p AL356488.2 miRanda starBase2
3622 chr1 109643057 109643057 1 + C T SKCM 109643037 + 109643017 109643057 41 CCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCTCCTC CCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCTCCTT < 41bp 1 0.672261336915193 1 0.209209769964218 experiment 0.655477326169615 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643037 chr1:109643057 . . 0 41 hm5C_associated_SNPs_34432 0 0 1 2 109643040 109643058 lncRNA hsa-miR-4784 AL356488.2 miRanda starBase2
3623 chr1 109643057 109643057 1 + C T SKCM 109643050 + 109643030 109643070 41 GGCCGACCCGAAATGAAAAGCTCTCCTCCTGCGAAGCCCCC GGCCGACCCGAAATGAAAAGCTCTCCTTCTGCGAAGCCCCC < 41bp 1 0.176375900045502 1 0.0476024150848389 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643050 chr1:109643057 . . 0 28 hm5C_associated_SNPs_34433 0 0 1 2 109643038 109643058 lncRNA hsa-miR-3150b-3p AL356488.2 miRanda starBase2
3624 chr1 109643057 109643057 1 + C T SKCM 109643050 + 109643030 109643070 41 GGCCGACCCGAAATGAAAAGCTCTCCTCCTGCGAAGCCCCC GGCCGACCCGAAATGAAAAGCTCTCCTTCTGCGAAGCCCCC < 41bp 1 0.176375900045502 1 0.0476024150848389 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643050 chr1:109643057 . . 0 28 hm5C_associated_SNPs_34433 0 0 1 2 109643040 109643058 lncRNA hsa-miR-4784 AL356488.2 miRanda starBase2
3625 chr1 109643057 109643057 1 + C T SKCM 109643068 + 109643048 109643088 41 AGCTCTCCTCCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG AGCTCTCCTTCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG < 41bp 1 0.154950487283158 1 0.153657376766205 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643068 chr1:109643057 . . 0 10 hm5C_associated_SNPs_34434 0 0 1 2 109643038 109643058 lncRNA hsa-miR-3150b-3p AL356488.2 miRanda starBase2
3626 chr1 109643057 109643057 1 + C T SKCM 109643068 + 109643048 109643088 41 AGCTCTCCTCCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG AGCTCTCCTTCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG < 41bp 1 0.154950487283158 1 0.153657376766205 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643068 chr1:109643057 . . 0 10 hm5C_associated_SNPs_34434 0 0 1 2 109643040 109643058 lncRNA hsa-miR-4784 AL356488.2 miRanda starBase2
3627 chr1 109643057 109643057 1 + C T SKCM 109643077 + 109643057 109643097 41 CCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCGAGGCCCCTT TCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCGAGGCCCCTT < 41bp 1 0.718018944374395 1 0.0826363861560822 experiment 0.56396211125121 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643077 chr1:109643057 . . 0 1 hm5C_associated_SNPs_34435 0 0 1 2 109643038 109643058 lncRNA hsa-miR-3150b-3p AL356488.2 miRanda starBase2
3628 chr1 109643057 109643057 1 + C T SKCM 109643077 + 109643057 109643097 41 CCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCGAGGCCCCTT TCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCGAGGCCCCTT < 41bp 1 0.718018944374395 1 0.0826363861560822 experiment 0.56396211125121 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643077 chr1:109643057 . . 0 1 hm5C_associated_SNPs_34435 0 0 1 2 109643040 109643058 lncRNA hsa-miR-4784 AL356488.2 miRanda starBase2
3629 chr1 109643058 109643058 1 + C T SKCM 109643050 + 109643030 109643070 41 GGCCGACCCGAAATGAAAAGCTCTCCTCCTGCGAAGCCCCC GGCCGACCCGAAATGAAAAGCTCTCCTCTTGCGAAGCCCCC < 41bp 1 0.188295261666186 1 0.109279960393906 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643050 chr1:109643058 . . 0 29 hm5C_associated_SNPs_34436 0 0 1 2 109643038 109643058 lncRNA hsa-miR-3150b-3p AL356488.2 miRanda starBase2
3630 chr1 109643058 109643058 1 + C T SKCM 109643050 + 109643030 109643070 41 GGCCGACCCGAAATGAAAAGCTCTCCTCCTGCGAAGCCCCC GGCCGACCCGAAATGAAAAGCTCTCCTCTTGCGAAGCCCCC < 41bp 1 0.188295261666186 1 0.109279960393906 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643050 chr1:109643058 . . 0 29 hm5C_associated_SNPs_34436 0 0 1 2 109643040 109643058 lncRNA hsa-miR-4784 AL356488.2 miRanda starBase2
3631 chr1 109643058 109643058 1 + C T SKCM 109643068 + 109643048 109643088 41 AGCTCTCCTCCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG AGCTCTCCTCTTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG < 41bp 1 0.142876724847597 1 0.144681662321091 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643068 chr1:109643058 . . 0 11 hm5C_associated_SNPs_34437 0 0 1 2 109643038 109643058 lncRNA hsa-miR-3150b-3p AL356488.2 miRanda starBase2
3632 chr1 109643058 109643058 1 + C T SKCM 109643068 + 109643048 109643088 41 AGCTCTCCTCCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG AGCTCTCCTCTTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG < 41bp 1 0.142876724847597 1 0.144681662321091 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643068 chr1:109643058 . . 0 11 hm5C_associated_SNPs_34437 0 0 1 2 109643040 109643058 lncRNA hsa-miR-4784 AL356488.2 miRanda starBase2
3633 chr1 109643058 109643058 1 + C T SKCM 109643077 + 109643057 109643097 41 CCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCGAGGCCCCTT CTTGCGAAGCCCCCTCGGGGCGCTGTGCAGCGAGGCCCCTT < 41bp 1 0.708843396366046 1 0.0968379080295563 experiment 0.582313207267908 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643077 chr1:109643058 . . 0 2 hm5C_associated_SNPs_34438 0 0 1 2 109643038 109643058 lncRNA hsa-miR-3150b-3p AL356488.2 miRanda starBase2
3634 chr1 109643058 109643058 1 + C T SKCM 109643077 + 109643057 109643097 41 CCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCGAGGCCCCTT CTTGCGAAGCCCCCTCGGGGCGCTGTGCAGCGAGGCCCCTT < 41bp 1 0.708843396366046 1 0.0968379080295563 experiment 0.582313207267908 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643077 chr1:109643058 . . 0 2 hm5C_associated_SNPs_34438 0 0 1 2 109643040 109643058 lncRNA hsa-miR-4784 AL356488.2 miRanda starBase2
3635 chrX 73041549 73041549 1 - G A SKCM 73041535 - 73041515 73041555 41 CCTTTTCCGTTTTTAAATCACTCACAGAGGGTGGGACAGGA CCTTTTTCGTTTTTAAATCACTCACAGAGGGTGGGACAGGA < 41bp 1 0.102551649798977 1 0.0677701532840729 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041535 chrX:73041549 . . 0 7 hm5C_associated_SNPs_34442 0 0 1 2 73041544 73041569 lncRNA hsa-miR-191-5p XIST miRanda starBase2
3636 chrX 73041549 73041549 1 - G A SKCM 73041535 - 73041515 73041555 41 CCTTTTCCGTTTTTAAATCACTCACAGAGGGTGGGACAGGA CCTTTTTCGTTTTTAAATCACTCACAGAGGGTGGGACAGGA < 41bp 1 0.102551649798977 1 0.0677701532840729 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041535 chrX:73041549 . . 0 7 hm5C_associated_SNPs_34442 0 0 1 2 73041528 73041551 lncRNA hsa-miR-4677-3p XIST miRanda starBase2
3637 chrX 73041549 73041549 1 - G A SKCM 73041537 - 73041517 73041557 41 GACCTTTTCCGTTTTTAAATCACTCACAGAGGGTGGGACAG GACCTTTTTCGTTTTTAAATCACTCACAGAGGGTGGGACAG < 41bp 1 0.0874526058710721 1 0.079292505979538 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041537 chrX:73041549 . . 0 9 hm5C_associated_SNPs_34443 0 0 1 2 73041544 73041569 lncRNA hsa-miR-191-5p XIST miRanda starBase2
3638 chrX 73041549 73041549 1 - G A SKCM 73041537 - 73041517 73041557 41 GACCTTTTCCGTTTTTAAATCACTCACAGAGGGTGGGACAG GACCTTTTTCGTTTTTAAATCACTCACAGAGGGTGGGACAG < 41bp 1 0.0874526058710721 1 0.079292505979538 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041537 chrX:73041549 . . 0 9 hm5C_associated_SNPs_34443 0 0 1 2 73041528 73041551 lncRNA hsa-miR-4677-3p XIST miRanda starBase2
3639 chrX 73041549 73041549 1 - G A SKCM 73041554 - 73041534 73041574 41 AGGCCTGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACT AGGCCTGGCTGGGCTTTGACCTTTTTCGTTTTTAAATCACT < 41bp 1 0.0131663676950255 1 0.0880817472934723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041554 chrX:73041549 . . 0 26 hm5C_associated_SNPs_34444 0 0 1 2 73041544 73041569 lncRNA hsa-miR-191-5p XIST miRanda starBase2
3640 chrX 73041549 73041549 1 - G A SKCM 73041554 - 73041534 73041574 41 AGGCCTGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACT AGGCCTGGCTGGGCTTTGACCTTTTTCGTTTTTAAATCACT < 41bp 1 0.0131663676950255 1 0.0880817472934723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041554 chrX:73041549 . . 0 26 hm5C_associated_SNPs_34444 0 0 1 2 73041528 73041551 lncRNA hsa-miR-4677-3p XIST miRanda starBase2
3641 chrX 73041549 73041549 1 - G A SKCM 73041561 - 73041541 73041581 41 TAAATGTAGGCCTGGCTGGGCTTTGACCTTTTCCGTTTTTA TAAATGTAGGCCTGGCTGGGCTTTGACCTTTTTCGTTTTTA < 41bp 1 0.0297149316841894 1 0.0456334054470062 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041561 chrX:73041549 . . 0 33 hm5C_associated_SNPs_34445 0 0 1 2 73041544 73041569 lncRNA hsa-miR-191-5p XIST miRanda starBase2
3642 chrX 73041549 73041549 1 - G A SKCM 73041561 - 73041541 73041581 41 TAAATGTAGGCCTGGCTGGGCTTTGACCTTTTCCGTTTTTA TAAATGTAGGCCTGGCTGGGCTTTGACCTTTTTCGTTTTTA < 41bp 1 0.0297149316841894 1 0.0456334054470062 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041561 chrX:73041549 . . 0 33 hm5C_associated_SNPs_34445 0 0 1 2 73041528 73041551 lncRNA hsa-miR-4677-3p XIST miRanda starBase2
3643 chrX 73041549 73041549 1 - G A SKCM 73041566 - 73041546 73041586 41 TTCTCTAAATGTAGGCCTGGCTGGGCTTTGACCTTTTCCGT TTCTCTAAATGTAGGCCTGGCTGGGCTTTGACCTTTTTCGT < 41bp 1 0.446994974412113 1 0.228501230478287 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041566 chrX:73041549 . . 0 38 hm5C_associated_SNPs_34446 0 0 1 2 73041544 73041569 lncRNA hsa-miR-191-5p XIST miRanda starBase2
3644 chrX 73041549 73041549 1 - G A SKCM 73041566 - 73041546 73041586 41 TTCTCTAAATGTAGGCCTGGCTGGGCTTTGACCTTTTCCGT TTCTCTAAATGTAGGCCTGGCTGGGCTTTGACCTTTTTCGT < 41bp 1 0.446994974412113 1 0.228501230478287 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041566 chrX:73041549 . . 0 38 hm5C_associated_SNPs_34446 0 0 1 2 73041528 73041551 lncRNA hsa-miR-4677-3p XIST miRanda starBase2
3645 chr11 118885705 118885705 1 + T G SKCM 118885708 + 118885688 118885728 41 TTAATTTTTTTTTCAGGTGCCACACCTCCCTGGATGATCCA TTAATTTTTTTTTCAGGGGCCACACCTCCCTGGATGATCCA < 41bp 1 0.041358926856698 1 0.0626097917556763 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118885708 chr11:118885705 synonymous SNV . 0 18 hm5C_associated_SNPs_34515 0 0 1 1 118885704 118885717 mRNA hsa-miR-122 CCDC84 miRanda miRanda
3646 chrX 77373639 77373639 1 + G A SKCM 77373646 + 77373626 77373666 41 CTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCG CTTGGAGAGCCCAAAGCGACCCTTCCTGGCCATCCTGGGCG < 41bp 1 0.0560102602465636 1 0.0578645467758179 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373646 chrX:77373639 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_34540 0 0 1 2 77373617 77373642 mRNA hsa-miR-330-5p PGK1 miRanda miRanda
3647 chrX 77373639 77373639 1 + G A SKCM 77373646 + 77373626 77373666 41 CTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCG CTTGGAGAGCCCAAAGCGACCCTTCCTGGCCATCCTGGGCG < 41bp 1 0.0560102602465636 1 0.0578645467758179 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373646 chrX:77373639 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_34540 0 0 1 2 77373623 77373642 mRNA hsa-miR-326 PGK1 miRanda miRanda
3648 chrX 114877744 114877744 1 + C T SKCM 114877725 + 114877705 114877745 41 TGATGTTGTCAGTGGAAACCCCAAACTCAACTTAGCTTTCG TGATGTTGTCAGTGGAAACCCCAAACTCAACTTAGCTTTTG < 41bp 1 0.438047872238359 1 0.250882804393768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLS3 ENSG00000102024 CDS Human protein_coding chrX:114877725 chrX:114877744 synonymous SNV . 0 40 hm5C_associated_SNPs_34543 0 0 1 1 114877735 114877756 mRNA hsa-miR-154 PLS3 miRanda miRanda
3649 chr12 112579928 112579928 1 + C T SKCM 112579938 + 112579918 112579958 41 GAATAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAAGAGA GAATAGAGGCTAACAGCCCCCCAAAGAGGGTGGTGAAGAGA < 41bp 1 0.296941423952046 1 0.383893102407455 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112579938 chr12:112579928 stopgain 0.092 0 11 hm5C_associated_SNPs_34546 0 0 1 1 112579910 112579930 mRNA hsa-miR-328 TRAFD1 miRanda miRanda
3650 chr10 71855426 71855426 1 + G A SKCM 71855433 + 71855413 71855453 41 TCCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG TCCTTAACCCAGAATGACATCAGCCATATTGGCTCCATGAG < 41bp 1 0.372053187466491 1 0.191115975379944 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71855433 chr10:71855426 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_34588 0 0 1 2 71855410 71855427 mRNA hsa-miR-330-5p H2AFY2 miRanda miRanda
3651 chr10 71855426 71855426 1 + G A SKCM 71855433 + 71855413 71855453 41 TCCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG TCCTTAACCCAGAATGACATCAGCCATATTGGCTCCATGAG < 41bp 1 0.372053187466491 1 0.191115975379944 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71855433 chr10:71855426 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_34588 0 0 1 2 71855410 71855427 mRNA hsa-miR-326 H2AFY2 miRanda miRanda
3652 chr17 38151308 38151308 1 + C T SKCM 38151309 + 38151289 38151329 41 GCTCACTCATGCCCTATTTCCTTCTGACTCAAGGTAAGGCT GCTCACTCATGCCCTATTTTCTTCTGACTCAAGGTAAGGCT < 41bp 1 0.342865022861072 1 0.0460131466388702 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38151309 chr17:38151308 synonymous SNV . 0 20 hm5C_associated_SNPs_34604 0 0 1 1 38151297 38151319 mRNA hsa-miR-383 PSMD3 miRanda miRanda
3653 chr11 107917082 107917082 1 + A G SKCM 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTGAGCAAGCACAGGCAGTAAGTTCTACATGC < 41bp 1 0.484865433409705 1 0.469757556915283 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917082 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_34669 0 0 1 1 107917074 107917093 mRNA hsa-miR-218 CUL5 miRanda miRanda
3654 chr7 116199076 116199076 1 + C T SKCM 116199065 + 116199045 116199085 41 TTTGACGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGT TTTGACGGCATTTGGAAGGCCAGCTTCACCATCTTCACTGT < 41bp 1 0.418623780259599 1 0.260498285293579 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 CDS Human protein_coding chr7:116199065 chr7:116199076 nonsynonymous SNV 0.996 2 32 hm5C_associated_SNPs_34700 0 0 0 3 116199068 116199088 mRNA hsa-miR-27a CAV1 miRanda miRanda
3655 chr7 116199076 116199076 1 + C T SKCM 116199065 + 116199045 116199085 41 TTTGACGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGT TTTGACGGCATTTGGAAGGCCAGCTTCACCATCTTCACTGT < 41bp 1 0.418623780259599 1 0.260498285293579 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 CDS Human protein_coding chr7:116199065 chr7:116199076 nonsynonymous SNV 0.996 2 32 hm5C_associated_SNPs_34700 0 0 0 3 116199068 116199088 mRNA hsa-miR-27b CAV1 miRanda miRanda
3656 chr7 116199076 116199076 1 + C T SKCM 116199065 + 116199045 116199085 41 TTTGACGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGT TTTGACGGCATTTGGAAGGCCAGCTTCACCATCTTCACTGT < 41bp 1 0.418623780259599 1 0.260498285293579 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 CDS Human protein_coding chr7:116199065 chr7:116199076 nonsynonymous SNV 0.996 2 32 hm5C_associated_SNPs_34700 0 0 0 3 116199069 116199087 mRNA hsa-miR-128 CAV1 miRanda miRanda
3657 chrX 73046784 73046784 1 - C T SKCM 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCAAAGGCCTGAGTTGGATGGAAGTCTC < 41bp 1 0.328257502132451 1 0.507725298404694 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046784 . . 0 16 hm5C_associated_SNPs_34750 0 0 1 3 73046776 73046796 lncRNA hsa-miR-1245b-5p XIST miRanda starBase2
3658 chrX 73046784 73046784 1 - C T SKCM 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCAAAGGCCTGAGTTGGATGGAAGTCTC < 41bp 1 0.328257502132451 1 0.507725298404694 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046784 . . 0 16 hm5C_associated_SNPs_34750 0 0 1 3 73046776 73046797 lncRNA hsa-miR-3142 XIST miRanda starBase2
3659 chrX 73046784 73046784 1 - C T SKCM 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCAAAGGCCTGAGTTGGATGGAAGTCTC < 41bp 1 0.328257502132451 1 0.507725298404694 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046784 . . 0 16 hm5C_associated_SNPs_34750 0 0 1 3 73046772 73046795 lncRNA hsa-miR-510-5p XIST miRanda starBase2
3660 chrX 73046784 73046784 1 - C T SKCM 73046786 - 73046766 73046806 41 AGAGGGTGGCCTGAATTGGACCGAAGGCCTGAGTTGGATGG AGAGGGTGGCCTGAATTGGACCAAAGGCCTGAGTTGGATGG < 41bp 1 0.229765423236617 1 0.183760225772858 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046786 chrX:73046784 . . 0 23 hm5C_associated_SNPs_34751 0 0 1 3 73046776 73046796 lncRNA hsa-miR-1245b-5p XIST miRanda starBase2
3661 chrX 73046784 73046784 1 - C T SKCM 73046786 - 73046766 73046806 41 AGAGGGTGGCCTGAATTGGACCGAAGGCCTGAGTTGGATGG AGAGGGTGGCCTGAATTGGACCAAAGGCCTGAGTTGGATGG < 41bp 1 0.229765423236617 1 0.183760225772858 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046786 chrX:73046784 . . 0 23 hm5C_associated_SNPs_34751 0 0 1 3 73046776 73046797 lncRNA hsa-miR-3142 XIST miRanda starBase2
3662 chrX 73046784 73046784 1 - C T SKCM 73046786 - 73046766 73046806 41 AGAGGGTGGCCTGAATTGGACCGAAGGCCTGAGTTGGATGG AGAGGGTGGCCTGAATTGGACCAAAGGCCTGAGTTGGATGG < 41bp 1 0.229765423236617 1 0.183760225772858 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046786 chrX:73046784 . . 0 23 hm5C_associated_SNPs_34751 0 0 1 3 73046772 73046795 lncRNA hsa-miR-510-5p XIST miRanda starBase2
3663 chrX 73046784 73046784 1 - C T SKCM 73046797 - 73046777 73046817 41 GCCAAGAAAACAGAGGGTGGCCTGAATTGGACCGAAGGCCT GCCAAGAAAACAGAGGGTGGCCTGAATTGGACCAAAGGCCT < 41bp 1 0.261639375978802 1 0.168487876653671 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046797 chrX:73046784 . . 0 34 hm5C_associated_SNPs_34752 0 0 1 3 73046776 73046796 lncRNA hsa-miR-1245b-5p XIST miRanda starBase2
3664 chrX 73046784 73046784 1 - C T SKCM 73046797 - 73046777 73046817 41 GCCAAGAAAACAGAGGGTGGCCTGAATTGGACCGAAGGCCT GCCAAGAAAACAGAGGGTGGCCTGAATTGGACCAAAGGCCT < 41bp 1 0.261639375978802 1 0.168487876653671 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046797 chrX:73046784 . . 0 34 hm5C_associated_SNPs_34752 0 0 1 3 73046776 73046797 lncRNA hsa-miR-3142 XIST miRanda starBase2
3665 chrX 73046784 73046784 1 - C T SKCM 73046797 - 73046777 73046817 41 GCCAAGAAAACAGAGGGTGGCCTGAATTGGACCGAAGGCCT GCCAAGAAAACAGAGGGTGGCCTGAATTGGACCAAAGGCCT < 41bp 1 0.261639375978802 1 0.168487876653671 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046797 chrX:73046784 . . 0 34 hm5C_associated_SNPs_34752 0 0 1 3 73046772 73046795 lncRNA hsa-miR-510-5p XIST miRanda starBase2
3666 chr1 155028639 155028639 1 + C T SKCM 155028630 + 155028610 155028650 41 CAGCGTGACCTGGTGGAGATCAGCCCAAACCCAGCTGTCAC CAGCGTGACCTGGTGGAGATCAGCCCAAATCCAGCTGTCAC < 41bp 1 0.552728572014931 1 0.410055309534073 experiment 0.894542855970138 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155028630 chr1:155028639 synonymous SNV . 0 30 hm5C_associated_SNPs_34838 0 0 1 1 155028630 155028651 mRNA hsa-miR-542-3p ADAM15 miRanda miRanda
3667 chr11 71502807 71502807 1 + T G SKCM 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGGGAAGCACCCGCCGTCAGTCAAGTAT < 41bp 1 0.21290056775616 1 0.439842760562897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502807 nonsynonymous SNV 0.957 0 16 hm5C_associated_SNPs_34868 0 0 0 1 71502787 71502810 mRNA hsa-miR-377 FAM86C miRanda miRanda
3668 chr10 129866491 129866491 1 + C T SKCM 129866472 + 129866452 129866492 41 CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTTC < 41bp 1 0.106040556867452 1 0.0431082546710968 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866472 chr10:129866491 synonymous SNV . 0 40 hm5C_associated_SNPs_34948 0 0 0 2 129866469 129866495 mRNA hsa-miR-146a PTPRE miRanda miRanda
3669 chr10 129866491 129866491 1 + C T SKCM 129866472 + 129866452 129866492 41 CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTTC < 41bp 1 0.106040556867452 1 0.0431082546710968 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866472 chr10:129866491 synonymous SNV . 0 40 hm5C_associated_SNPs_34948 0 0 0 2 129866475 129866495 mRNA hsa-miR-873 PTPRE miRanda miRanda
3670 chr17 43323053 43323053 1 + C T SKCM 43323037 + 43323017 43323057 41 GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGG GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCTCAGG < 41bp 1 0.4569715250029 1 0.291624009609222 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323037 chr17:43323053 nonsynonymous SNV 0.838 4 37 hm5C_associated_SNPs_34949 0 0 1 1 43323048 43323071 mRNA hsa-miR-185 FMNL1 miRanda miRanda
3671 chr1 227618505 227618505 1 + G A SKCM 227618502 + 227618482 227618522 41 CAGACAGAAGGATGTAAAGTCTGGAAAATACAGCCAGATCC CAGACAGAAGGATGTAAAGTCTGAAAAATACAGCCAGATCC < 41bp 1 0.570053540959683 1 0.501811861991882 experiment 0.859892918080633 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC42BPA;ZNF678 ENSG00000234277;ENSG00000242757 ncRNA_exonic Human other chr1:227618502 chr1:227618505 . . 0 24 hm5C_associated_SNPs_34965 0 0 0 3 227618499 227618519 lncRNA hsa-miR-3064-5p LINC01641 miRanda starBase2
3672 chr1 227618505 227618505 1 + G A SKCM 227618502 + 227618482 227618522 41 CAGACAGAAGGATGTAAAGTCTGGAAAATACAGCCAGATCC CAGACAGAAGGATGTAAAGTCTGAAAAATACAGCCAGATCC < 41bp 1 0.570053540959683 1 0.501811861991882 experiment 0.859892918080633 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC42BPA;ZNF678 ENSG00000234277;ENSG00000242757 ncRNA_exonic Human other chr1:227618502 chr1:227618505 . . 0 24 hm5C_associated_SNPs_34965 0 0 0 3 227618499 227618519 lncRNA hsa-miR-6504-5p LINC01641 miRanda starBase2
3673 chr1 227618505 227618505 1 + G A SKCM 227618502 + 227618482 227618522 41 CAGACAGAAGGATGTAAAGTCTGGAAAATACAGCCAGATCC CAGACAGAAGGATGTAAAGTCTGAAAAATACAGCCAGATCC < 41bp 1 0.570053540959683 1 0.501811861991882 experiment 0.859892918080633 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC42BPA;ZNF678 ENSG00000234277;ENSG00000242757 ncRNA_exonic Human other chr1:227618502 chr1:227618505 . . 0 24 hm5C_associated_SNPs_34965 0 0 0 3 227618485 227618505 lncRNA hsa-miR-499b-5p LINC01641 miRanda starBase2
3674 chr6 32123528 32123528 1 + C T SKCM 32123537 + 32123517 32123557 41 TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTATG TTCTTTCATCTTCCTCTCCTCTCCACAGATGGGACAGTATG < 41bp 1 0.633382160442263 1 0.934066534042358 experiment 0.733235679115474 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control PPT2 ENSG00000221988;ENSG00000258388 CDS Human other chr6:32123537 chr6:32123528 nonsynonymous SNV 0.997 1 12 hm5C_associated_SNPs_35021 0 0 1 1 32123509 32123529 mRNA hsa-miR-143 PPT2 miRanda miRanda
3675 chr17 6920628 6920628 1 + C T SKCM 6920637 + 6920617 6920657 41 GATCCTCCTCTCCTCTCCTGCTGAGCCTTCCACCTCTGACC GATCCTCCTCTTCTCTCCTGCTGAGCCTTCCACCTCTGACC < 41bp 1 0.458112273345424 1 0.210938632488251 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C17orf49 ENSG00000161939;ENSG00000258315 CDS Human other chr17:6920637 chr17:6920628 synonymous SNV . 0 12 hm5C_associated_SNPs_35127 0 0 1 2 6920623 6920644 mRNA hsa-miR-24 C17orf49 miRanda miRanda
3676 chr17 6920628 6920628 1 + C T SKCM 6920637 + 6920617 6920657 41 GATCCTCCTCTCCTCTCCTGCTGAGCCTTCCACCTCTGACC GATCCTCCTCTTCTCTCCTGCTGAGCCTTCCACCTCTGACC < 41bp 1 0.458112273345424 1 0.210938632488251 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C17orf49 ENSG00000161939;ENSG00000258315 CDS Human other chr17:6920637 chr17:6920628 synonymous SNV . 0 12 hm5C_associated_SNPs_35127 0 0 1 2 6920619 6920640 mRNA hsa-miR-214 C17orf49 miRanda miRanda
3677 chr3 14487283 14487283 1 + C T SKCM 14487265 + 14487245 14487285 41 TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTTTT < 41bp 1 0.199662200977918 1 0.356796115636826 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487265 chr3:14487283 synonymous SNV . 0 39 hm5C_associated_SNPs_35207 0 0 1 1 14487283 14487306 mRNA hsa-miR-193a-3p SLC6A6 miRanda miRanda
3678 chr3 14487283 14487283 1 + C T SKCM 14487269 + 14487249 14487289 41 TTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTTGGAG TTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTTTTGGAG < 41bp 1 0.304125549525585 1 0.267167538404465 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487269 chr3:14487283 synonymous SNV . 0 35 hm5C_associated_SNPs_35208 0 0 1 1 14487283 14487306 mRNA hsa-miR-193a-3p SLC6A6 miRanda miRanda
3679 chr17 38152539 38152539 1 + C T SKCM 38152535 + 38152515 38152555 41 ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC ATTCCACCCGAGAGCCCCAGCTAGTCTTCCACCAGCGCATC < 41bp 1 0.422967174550758 1 0.0737082064151764 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38152535 chr17:38152539 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_35317 0 0 1 1 38152529 38152551 mRNA hsa-miR-138 PSMD3 miRanda miRanda
3680 chr1 53416510 53416510 1 + G A SKCM 53416511 + 53416491 53416531 41 CAATGTCAACAATAACTGTGCTACTGGTTCTACTGCTTTGT CAATGTCAACAATAACTGTACTACTGGTTCTACTGCTTTGT < 41bp 1 0.216621429703091 1 0.037497341632843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53416511 chr1:53416510 nonsynonymous SNV 0.946 3 20 hm5C_associated_SNPs_35392 0 0 1 1 53416490 53416510 mRNA hsa-miR-144 SCP2 miRanda miRanda
3681 chr20 57480491 57480491 1 + C A SKCM 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGAGTGCGTGCCTGATACGAACGCTCCAACGA < 41bp 1 0.42268337931938 1 0.166440695524216 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480491 stopgain 0.987 1 24 hm5C_associated_SNPs_35467 0 0 1 2 57480471 57480493 mRNA hsa-miR-15a GNAS miRanda miRanda
3682 chr20 57480491 57480491 1 + C A SKCM 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGAGTGCGTGCCTGATACGAACGCTCCAACGA < 41bp 1 0.42268337931938 1 0.166440695524216 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480491 stopgain 0.987 1 24 hm5C_associated_SNPs_35467 0 0 1 2 57480471 57480493 mRNA hsa-miR-16 GNAS miRanda miRanda
3683 chr11 65271911 65271911 1 + A G SKCM 65271929 + 65271909 65271949 41 GTATGATTAAAAGTTGTGTTCCCCAATGCTTGGAGTAGTGA GTGTGATTAAAAGTTGTGTTCCCCAATGCTTGGAGTAGTGA < 41bp 1 0.37598893887521 1 0.083499401807785 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271929 chr11:65271911 . . 0 3 hm5C_associated_SNPs_35473 0 0 1 2 65271894 65271916 lncRNA hsa-miR-154-3p MALAT1 miRanda starBase2
3684 chr11 65271911 65271911 1 + A G SKCM 65271929 + 65271909 65271949 41 GTATGATTAAAAGTTGTGTTCCCCAATGCTTGGAGTAGTGA GTGTGATTAAAAGTTGTGTTCCCCAATGCTTGGAGTAGTGA < 41bp 1 0.37598893887521 1 0.083499401807785 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271929 chr11:65271911 . . 0 3 hm5C_associated_SNPs_35473 0 0 1 2 65271895 65271916 lncRNA hsa-miR-487a-3p MALAT1 miRanda starBase2
3685 chr17 53852169 53852169 1 + C T SKCM 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTTGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT < 41bp 1 0.304697090207229 1 0.113316476345062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852169 synonymous SNV . 0 5 hm5C_associated_SNPs_35498 0 0 1 3 53852153 53852172 mRNA hsa-miR-26a PCTP miRanda miRanda
3686 chr17 53852169 53852169 1 + C T SKCM 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTTGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT < 41bp 1 0.304697090207229 1 0.113316476345062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852169 synonymous SNV . 0 5 hm5C_associated_SNPs_35498 0 0 1 3 53852153 53852172 mRNA hsa-miR-26b PCTP miRanda miRanda
3687 chr17 53852169 53852169 1 + C T SKCM 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTTGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT < 41bp 1 0.304697090207229 1 0.113316476345062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852169 synonymous SNV . 0 5 hm5C_associated_SNPs_35498 0 0 1 3 53852155 53852172 mRNA hsa-miR-1297 PCTP miRanda miRanda
3688 chrX 73046495 73046495 1 - C T SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGAAAATCCCAAGATGAGAACCCTAAAC < 41bp 1 0.599240269793099 1 0.641047835350037 experiment 0.801519460413801 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046495 . . 0 16 hm5C_associated_SNPs_35505 0 0 1 3 73046493 73046513 lncRNA hsa-miR-2355-5p XIST miRanda starBase2
3689 chrX 73046495 73046495 1 - C T SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGAAAATCCCAAGATGAGAACCCTAAAC < 41bp 1 0.599240269793099 1 0.641047835350037 experiment 0.801519460413801 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046495 . . 0 16 hm5C_associated_SNPs_35505 0 0 1 3 73046488 73046509 lncRNA hsa-miR-3167 XIST miRanda starBase2
3690 chrX 73046495 73046495 1 - C T SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGAAAATCCCAAGATGAGAACCCTAAAC < 41bp 1 0.599240269793099 1 0.641047835350037 experiment 0.801519460413801 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046495 . . 0 16 hm5C_associated_SNPs_35505 0 0 1 3 73046488 73046509 lncRNA hsa-miR-876-5p XIST miRanda starBase2
3691 chr17 30694883 30694883 1 + C T SKCM 30694868 + 30694848 30694888 41 CCTGCAACAACTACAGAACCCCCAAAGCCTACATTCCCTGC CCTGCAACAACTACAGAACCCCCAAAGCCTACATTTCCTGC < 41bp 1 0.448853870093164 1 0.128404408693314 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30694868 chr17:30694883 synonymous SNV . 0 36 hm5C_associated_SNPs_35598 0 0 1 4 30694864 30694885 mRNA hsa-miR-1 ZNF207 miRanda miRanda
3692 chr17 30694883 30694883 1 + C T SKCM 30694868 + 30694848 30694888 41 CCTGCAACAACTACAGAACCCCCAAAGCCTACATTCCCTGC CCTGCAACAACTACAGAACCCCCAAAGCCTACATTTCCTGC < 41bp 1 0.448853870093164 1 0.128404408693314 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30694868 chr17:30694883 synonymous SNV . 0 36 hm5C_associated_SNPs_35598 0 0 1 4 30694880 30694904 mRNA hsa-miR-134 ZNF207 miRanda miRanda
3693 chr17 30694883 30694883 1 + C T SKCM 30694868 + 30694848 30694888 41 CCTGCAACAACTACAGAACCCCCAAAGCCTACATTCCCTGC CCTGCAACAACTACAGAACCCCCAAAGCCTACATTTCCTGC < 41bp 1 0.448853870093164 1 0.128404408693314 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30694868 chr17:30694883 synonymous SNV . 0 36 hm5C_associated_SNPs_35598 0 0 1 4 30694865 30694885 mRNA hsa-miR-206 ZNF207 miRanda miRanda
3694 chr17 30694883 30694883 1 + C T SKCM 30694868 + 30694848 30694888 41 CCTGCAACAACTACAGAACCCCCAAAGCCTACATTCCCTGC CCTGCAACAACTACAGAACCCCCAAAGCCTACATTTCCTGC < 41bp 1 0.448853870093164 1 0.128404408693314 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30694868 chr17:30694883 synonymous SNV . 0 36 hm5C_associated_SNPs_35598 0 0 1 4 30694868 30694885 mRNA hsa-miR-613 ZNF207 miRanda miRanda
3695 chr16 29851524 29851524 1 + C T SKCM 29851532 + 29851512 29851552 41 TTTTCCTCCAGCCAGGAGAGCAGCTGGAACAAGGCATCCAG TTTTCCTCCAGCTAGGAGAGCAGCTGGAACAAGGCATCCAG < 41bp 1 0.426839661730093 1 0.483132392168045 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29851532 chr16:29851524 nonsynonymous SNV 0.984 2 13 hm5C_associated_SNPs_35665 0 0 1 1 29851506 29851528 mRNA hsa-miR-370 MVP miRanda miRanda
3696 chr19 13010515 13010515 1 + C T SKCM 13010519 + 13010499 13010539 41 ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAAGA ATTTCCCTTCTGAAGTTGTTCAGATGTGTTCCTTAAAAAGA < 41bp 1 0.426299906873722 1 0.401756882667542 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13010519 chr19:13010515 synonymous SNV . 0 17 hm5C_associated_SNPs_35715 0 0 1 1 13010513 13010533 mRNA hsa-miR-873 GCDH miRanda miRanda
3697 chr20 48568669 48568669 1 + C T SKCM 48568680 + 48568660 48568700 41 CTCCATCATCGACCAGTGAGCAGAGTCCGTGCTTGCTATCT CTCCATCATTGACCAGTGAGCAGAGTCCGTGCTTGCTATCT < 41bp 1 0.663102196898554 1 0.691442608833313 experiment 0.673795606202892 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF114 ENSG00000124226 CDS Human protein_coding chr20:48568680 chr20:48568669 synonymous SNV . 0 10 hm5C_associated_SNPs_35744 0 0 1 1 48568650 48568672 mRNA hsa-miR-433 RNF114 miRanda miRanda
3698 chr19 50906828 50906828 1 + C T SKCM 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACTTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.083334911327076 1 0.206457853317261 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906828 nonsynonymous SNV 0.976 4 6 hm5C_associated_SNPs_35764 0 0 1 1 50906808 50906831 mRNA hsa-miR-98 POLD1 miRanda miRanda
3699 chr19 50906827 50906827 1 + C T SKCM 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTATCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.0756452236639736 1 0.193235009908676 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906827 synonymous SNV . 0 5 hm5C_associated_SNPs_35767 0 0 1 1 50906808 50906831 mRNA hsa-miR-98 POLD1 miRanda miRanda
3700 chr2 27280274 27280274 1 + C T SKCM 27280287 + 27280267 27280307 41 GGCTTTCCCCTCCAGATACACTGTGGAACTATTTGAGCAGG GGCTTTCTCCTCCAGATACACTGTGGAACTATTTGAGCAGG < 41bp 1 0.598669227128437 1 0.492403745651245 experiment 0.802661545743126 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27280287 chr2:27280274 nonsynonymous SNV 0.998 4 8 hm5C_associated_SNPs_35774 0 0 1 1 27280272 27280292 mRNA hsa-miR-128 AGBL5 miRanda miRanda
3701 chr1 53420459 53420459 1 + G A SKCM 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGAAGATGAGTAAGAGAAGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.380366427789526 1 0.106358379125595 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420459 nonsynonymous SNV 0.714 5 15 hm5C_associated_SNPs_35816 0 0 1 1 53420459 53420476 mRNA hsa-miR-590-3p SCP2 miRanda miRanda
3702 chr7 66489954 66489954 1 + C T SKCM 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTTCATT < 41bp 1 0.361894886773561 1 0.0993786752223969 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489954 nonsynonymous SNV 0.801 1 37 hm5C_associated_SNPs_35958 0 0 0 1 66489954 66489975 mRNA hsa-miR-216a TYW1 miRanda miRanda
3703 chr7 66489955 66489955 1 + C T SKCM 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCTATT < 41bp 1 0.381069277877289 1 0.0861095786094666 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489955 synonymous SNV . 0 38 hm5C_associated_SNPs_35969 0 0 0 1 66489954 66489975 mRNA hsa-miR-216a TYW1 miRanda miRanda
3704 chr1 235577778 235577778 1 + G A SKCM 235577765 + 235577745 235577785 41 CAGGCACCCGACAGGAGGATCCTTTATTCGTCCGAACAAGG CAGGCACCCGACAGGAGGATCCTTTATTCGTCCAAACAAGG < 41bp 1 0.011604665527564 1 0.058920830488205 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235577765 chr1:235577778 synonymous SNV . 0 34 hm5C_associated_SNPs_35990 0 0 1 1 235577763 235577784 mRNA hsa-miR-375 TBCE miRanda miRanda
3705 chr16 30096328 30096328 1 + C T SKCM 30096347 + 30096327 30096367 41 CCCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGC CTCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGC < 41bp 1 0.311943630987438 1 0.110338866710663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096347 chr16:30096328 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_36006 0 0 1 1 30096318 30096341 mRNA hsa-miR-187 PPP4C miRanda miRanda
3706 chr15 25220525 25220525 1 + G A SKCM 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAGTAGCAAAATGCTGCAGCACATTGACTATAGA < 41bp 1 0.672366593699279 1 0.61433881521225 experiment 0.655266812601441 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220525 synonymous SNV . 0 17 hm5C_associated_SNPs_36017 0 0 0 2 25220511 25220533 mRNA hsa-miR-103 SNURF miRanda miRanda
3707 chr15 25220525 25220525 1 + G A SKCM 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAGTAGCAAAATGCTGCAGCACATTGACTATAGA < 41bp 1 0.672366593699279 1 0.61433881521225 experiment 0.655266812601441 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220525 synonymous SNV . 0 17 hm5C_associated_SNPs_36017 0 0 0 2 25220511 25220533 mRNA hsa-miR-107 SNURF miRanda miRanda
3708 chrX 73046475 73046475 1 - G A SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCTTAAAC < 41bp 1 0.538741025057723 1 0.599575042724609 experiment 0.922517949884553 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046475 . . 0 36 hm5C_associated_SNPs_36020 0 0 1 11 73046461 73046479 lncRNA hsa-let-7b-5p XIST miRanda starBase2
3709 chrX 73046475 73046475 1 - G A SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCTTAAAC < 41bp 1 0.538741025057723 1 0.599575042724609 experiment 0.922517949884553 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046475 . . 0 36 hm5C_associated_SNPs_36020 0 0 1 11 73046461 73046479 lncRNA hsa-let-7c-5p XIST miRanda starBase2
3710 chrX 73046475 73046475 1 - G A SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCTTAAAC < 41bp 1 0.538741025057723 1 0.599575042724609 experiment 0.922517949884553 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046475 . . 0 36 hm5C_associated_SNPs_36020 0 0 1 11 73046461 73046480 lncRNA hsa-let-7d-5p XIST miRanda starBase2
3711 chrX 73046475 73046475 1 - G A SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCTTAAAC < 41bp 1 0.538741025057723 1 0.599575042724609 experiment 0.922517949884553 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046475 . . 0 36 hm5C_associated_SNPs_36020 0 0 1 11 73046461 73046481 lncRNA hsa-let-7e-5p XIST miRanda starBase2
3712 chrX 73046475 73046475 1 - G A SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCTTAAAC < 41bp 1 0.538741025057723 1 0.599575042724609 experiment 0.922517949884553 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046475 . . 0 36 hm5C_associated_SNPs_36020 0 0 1 11 73046461 73046481 lncRNA hsa-let-7f-5p XIST miRanda starBase2
3713 chrX 73046475 73046475 1 - G A SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCTTAAAC < 41bp 1 0.538741025057723 1 0.599575042724609 experiment 0.922517949884553 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046475 . . 0 36 hm5C_associated_SNPs_36020 0 0 1 11 73046461 73046481 lncRNA hsa-let-7g-5p XIST miRanda starBase2
3714 chrX 73046475 73046475 1 - G A SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCTTAAAC < 41bp 1 0.538741025057723 1 0.599575042724609 experiment 0.922517949884553 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046475 . . 0 36 hm5C_associated_SNPs_36020 0 0 1 11 73046461 73046481 lncRNA hsa-let-7i-5p XIST miRanda starBase2
3715 chrX 73046475 73046475 1 - G A SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCTTAAAC < 41bp 1 0.538741025057723 1 0.599575042724609 experiment 0.922517949884553 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046475 . . 0 36 hm5C_associated_SNPs_36020 0 0 1 11 73046461 73046480 lncRNA hsa-miR-4458 XIST miRanda starBase2
3716 chrX 73046475 73046475 1 - G A SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCTTAAAC < 41bp 1 0.538741025057723 1 0.599575042724609 experiment 0.922517949884553 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046475 . . 0 36 hm5C_associated_SNPs_36020 0 0 1 11 73046461 73046476 lncRNA hsa-miR-4500 XIST miRanda starBase2
3717 chrX 73046475 73046475 1 - G A SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCTTAAAC < 41bp 1 0.538741025057723 1 0.599575042724609 experiment 0.922517949884553 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046475 . . 0 36 hm5C_associated_SNPs_36020 0 0 1 11 73046461 73046482 lncRNA hsa-miR-98-5p XIST miRanda starBase2
3718 chrX 73046475 73046475 1 - G A SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCTTAAAC < 41bp 1 0.538741025057723 1 0.599575042724609 experiment 0.922517949884553 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046475 . . 0 36 hm5C_associated_SNPs_36020 0 0 1 11 73046467 73046487 lncRNA hsa-miR-629-5p XIST miRanda starBase2
3719 chrX 73043525 73043525 1 - C T SKCM 73043508 - 73043488 73043528 41 GAGGAGATGGAAAATTTTTGCAAAAAACAAGGTGTTGTGGT GAGAAGATGGAAAATTTTTGCAAAAAACAAGGTGTTGTGGT < 41bp 1 0.321739356854113 1 0.603963494300842 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043508 chrX:73043525 . . 0 4 hm5C_associated_SNPs_36035 0 0 1 1 73043504 73043526 lncRNA hsa-miR-450b-5p XIST miRanda starBase2
3720 chrX 73043525 73043525 1 - C T SKCM 73043534 - 73043514 73043554 41 GAAGATACATGCTTCCTGGCCTGATTGAGGAGATGGAAAAT GAAGATACATGCTTCCTGGCCTGATTGAGAAGATGGAAAAT < 41bp 1 0.102031945179315 1 0.17523866891861 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043534 chrX:73043525 . . 0 30 hm5C_associated_SNPs_36036 0 0 1 1 73043504 73043526 lncRNA hsa-miR-450b-5p XIST miRanda starBase2
3721 chr11 126143269 126143269 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTTCGGTTCA < 41bp 1 0.507234930478368 1 0.0860559642314911 experiment 0.985530139043264 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143269 synonymous SNV . 0 34 hm5C_associated_SNPs_36060 0 0 1 6 126143268 126143294 mRNA hsa-let-7a FOXRED1 miRanda miRanda
3722 chr11 126143269 126143269 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTTCGGTTCA < 41bp 1 0.507234930478368 1 0.0860559642314911 experiment 0.985530139043264 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143269 synonymous SNV . 0 34 hm5C_associated_SNPs_36060 0 0 1 6 126143268 126143294 mRNA hsa-let-7c FOXRED1 miRanda miRanda
3723 chr11 126143269 126143269 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTTCGGTTCA < 41bp 1 0.507234930478368 1 0.0860559642314911 experiment 0.985530139043264 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143269 synonymous SNV . 0 34 hm5C_associated_SNPs_36060 0 0 1 6 126143268 126143294 mRNA hsa-let-7d FOXRED1 miRanda miRanda
3724 chr11 126143269 126143269 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTTCGGTTCA < 41bp 1 0.507234930478368 1 0.0860559642314911 experiment 0.985530139043264 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143269 synonymous SNV . 0 34 hm5C_associated_SNPs_36060 0 0 1 6 126143268 126143294 mRNA hsa-let-7e FOXRED1 miRanda miRanda
3725 chr11 126143269 126143269 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTTCGGTTCA < 41bp 1 0.507234930478368 1 0.0860559642314911 experiment 0.985530139043264 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143269 synonymous SNV . 0 34 hm5C_associated_SNPs_36060 0 0 1 6 126143268 126143294 mRNA hsa-let-7g FOXRED1 miRanda miRanda
3726 chr11 126143269 126143269 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTTCGGTTCA < 41bp 1 0.507234930478368 1 0.0860559642314911 experiment 0.985530139043264 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143269 synonymous SNV . 0 34 hm5C_associated_SNPs_36060 0 0 1 6 126143268 126143294 mRNA hsa-let-7i FOXRED1 miRanda miRanda
3727 chr20 57478841 57478841 1 + C T SKCM 57478822 + 57478802 57478842 41 TACATCCTGAGTGTGATGAACGTGCCTGACTTTGACTTCCC TACATCCTGAGTGTGATGAACGTGCCTGACTTTGACTTCTC < 41bp 1 0.254032385180383 1 0.0473552346229553 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57478822 chr20:57478841 nonsynonymous SNV 0.998 2 40 hm5C_associated_SNPs_36067 0 0 1 2 57478838 57478846 mRNA hsa-miR-376a GNAS miRanda miRanda
3728 chr20 57478841 57478841 1 + C T SKCM 57478822 + 57478802 57478842 41 TACATCCTGAGTGTGATGAACGTGCCTGACTTTGACTTCCC TACATCCTGAGTGTGATGAACGTGCCTGACTTTGACTTCTC < 41bp 1 0.254032385180383 1 0.0473552346229553 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57478822 chr20:57478841 nonsynonymous SNV 0.998 2 40 hm5C_associated_SNPs_36067 0 0 1 2 57478837 57478846 mRNA hsa-miR-376b GNAS miRanda miRanda
3729 chr20 57478841 57478841 1 + C T SKCM 57478840 + 57478820 57478860 41 AACGTGCCTGACTTTGACTTCCCTCCCGTAAGCTACACCCC AACGTGCCTGACTTTGACTTCTCTCCCGTAAGCTACACCCC < 41bp 1 0.141968773471262 1 0.116267085075378 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57478840 chr20:57478841 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_36068 0 0 1 2 57478838 57478846 mRNA hsa-miR-376a GNAS miRanda miRanda
3730 chr20 57478841 57478841 1 + C T SKCM 57478840 + 57478820 57478860 41 AACGTGCCTGACTTTGACTTCCCTCCCGTAAGCTACACCCC AACGTGCCTGACTTTGACTTCTCTCCCGTAAGCTACACCCC < 41bp 1 0.141968773471262 1 0.116267085075378 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57478840 chr20:57478841 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_36068 0 0 1 2 57478837 57478846 mRNA hsa-miR-376b GNAS miRanda miRanda
3731 chr9 93624558 93624558 1 + C T SKCM 93624554 + 93624534 93624574 41 CACGAAGGGAAGGTGCTGCACTATCGCATCGACAAAGACAA CACGAAGGGAAGGTGCTGCACTATTGCATCGACAAAGACAA < 41bp 1 0.245113446386079 1 0.0466794669628143 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624554 chr9:93624558 nonsynonymous SNV 0.968 5 25 hm5C_associated_SNPs_36105 0 0 0 1 93624548 93624570 mRNA hsa-miR-450a SYK miRanda miRanda
3732 chrX 73046521 73046521 1 - C T SKCM 73046526 - 73046506 73046546 41 TGGAGGCCCATGACCCAGAACCCAGGAAGGATAGAAGCTTG TGGAGGCCCATGACCCAGAACCCAGAAAGGATAGAAGCTTG < 41bp 1 0.158584119055138 1 0.438481241464615 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046526 chrX:73046521 . . 0 26 hm5C_associated_SNPs_36154 0 0 1 3 73046519 73046540 lncRNA hsa-miR-1343-3p XIST miRanda starBase2
3733 chrX 73046521 73046521 1 - C T SKCM 73046526 - 73046506 73046546 41 TGGAGGCCCATGACCCAGAACCCAGGAAGGATAGAAGCTTG TGGAGGCCCATGACCCAGAACCCAGAAAGGATAGAAGCTTG < 41bp 1 0.158584119055138 1 0.438481241464615 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046526 chrX:73046521 . . 0 26 hm5C_associated_SNPs_36154 0 0 1 3 73046519 73046539 lncRNA hsa-miR-6783-3p XIST miRanda starBase2
3734 chrX 73046521 73046521 1 - C T SKCM 73046526 - 73046506 73046546 41 TGGAGGCCCATGACCCAGAACCCAGGAAGGATAGAAGCTTG TGGAGGCCCATGACCCAGAACCCAGAAAGGATAGAAGCTTG < 41bp 1 0.158584119055138 1 0.438481241464615 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046526 chrX:73046521 . . 0 26 hm5C_associated_SNPs_36154 0 0 1 3 73046503 73046525 lncRNA hsa-miR-498 XIST miRanda starBase2
3735 chrX 73046521 73046521 1 - C T SKCM 73046532 - 73046512 73046552 41 GGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAGA GGAATCTGGAGGCCCATGACCCAGAACCCAGAAAGGATAGA < 41bp 1 0.276851989641052 1 0.371361911296844 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046532 chrX:73046521 . . 0 32 hm5C_associated_SNPs_36155 0 0 1 3 73046519 73046540 lncRNA hsa-miR-1343-3p XIST miRanda starBase2
3736 chrX 73046521 73046521 1 - C T SKCM 73046532 - 73046512 73046552 41 GGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAGA GGAATCTGGAGGCCCATGACCCAGAACCCAGAAAGGATAGA < 41bp 1 0.276851989641052 1 0.371361911296844 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046532 chrX:73046521 . . 0 32 hm5C_associated_SNPs_36155 0 0 1 3 73046519 73046539 lncRNA hsa-miR-6783-3p XIST miRanda starBase2
3737 chrX 73046521 73046521 1 - C T SKCM 73046532 - 73046512 73046552 41 GGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAGA GGAATCTGGAGGCCCATGACCCAGAACCCAGAAAGGATAGA < 41bp 1 0.276851989641052 1 0.371361911296844 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046532 chrX:73046521 . . 0 32 hm5C_associated_SNPs_36155 0 0 1 3 73046503 73046525 lncRNA hsa-miR-498 XIST miRanda starBase2
3738 chrX 73046521 73046521 1 - C T SKCM 73046533 - 73046513 73046553 41 CGGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAG CGGAATCTGGAGGCCCATGACCCAGAACCCAGAAAGGATAG < 41bp 1 0.262123384987426 1 0.337843775749207 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046533 chrX:73046521 . . 0 33 hm5C_associated_SNPs_36156 0 0 1 3 73046519 73046540 lncRNA hsa-miR-1343-3p XIST miRanda starBase2
3739 chrX 73046521 73046521 1 - C T SKCM 73046533 - 73046513 73046553 41 CGGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAG CGGAATCTGGAGGCCCATGACCCAGAACCCAGAAAGGATAG < 41bp 1 0.262123384987426 1 0.337843775749207 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046533 chrX:73046521 . . 0 33 hm5C_associated_SNPs_36156 0 0 1 3 73046519 73046539 lncRNA hsa-miR-6783-3p XIST miRanda starBase2
3740 chrX 73046521 73046521 1 - C T SKCM 73046533 - 73046513 73046553 41 CGGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAG CGGAATCTGGAGGCCCATGACCCAGAACCCAGAAAGGATAG < 41bp 1 0.262123384987426 1 0.337843775749207 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046533 chrX:73046521 . . 0 33 hm5C_associated_SNPs_36156 0 0 1 3 73046503 73046525 lncRNA hsa-miR-498 XIST miRanda starBase2
3741 chrX 73046521 73046521 1 - C T SKCM 73046539 - 73046519 73046559 41 AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGAAA < 41bp 1 0.0652219365957593 1 0.168595552444458 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046539 chrX:73046521 . . 0 39 hm5C_associated_SNPs_36157 0 0 1 3 73046519 73046540 lncRNA hsa-miR-1343-3p XIST miRanda starBase2
3742 chrX 73046521 73046521 1 - C T SKCM 73046539 - 73046519 73046559 41 AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGAAA < 41bp 1 0.0652219365957593 1 0.168595552444458 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046539 chrX:73046521 . . 0 39 hm5C_associated_SNPs_36157 0 0 1 3 73046519 73046539 lncRNA hsa-miR-6783-3p XIST miRanda starBase2
3743 chrX 73046521 73046521 1 - C T SKCM 73046539 - 73046519 73046559 41 AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGAAA < 41bp 1 0.0652219365957593 1 0.168595552444458 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046539 chrX:73046521 . . 0 39 hm5C_associated_SNPs_36157 0 0 1 3 73046503 73046525 lncRNA hsa-miR-498 XIST miRanda starBase2
3744 chr9 21859377 21859377 1 + C T SKCM 21859391 + 21859371 21859411 41 ACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT ACCATATCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT < 41bp 1 0.250738118303769 1 0.241316199302673 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859391 chr9:21859377 nonsynonymous SNV 0.998 2 7 hm5C_associated_SNPs_36166 0 0 1 1 21859363 21859381 mRNA hsa-miR-202 MTAP miRanda miRanda
3745 chrX 73046780 73046780 1 - C T SKCM 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCGAAGACCTGAGTTGGATGGAAGTCTC < 41bp 1 0.356132114293114 1 0.398927241563797 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046780 . . 0 20 hm5C_associated_SNPs_36175 0 0 1 3 73046776 73046796 lncRNA hsa-miR-1245b-5p XIST miRanda starBase2
3746 chrX 73046780 73046780 1 - C T SKCM 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCGAAGACCTGAGTTGGATGGAAGTCTC < 41bp 1 0.356132114293114 1 0.398927241563797 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046780 . . 0 20 hm5C_associated_SNPs_36175 0 0 1 3 73046776 73046797 lncRNA hsa-miR-3142 XIST miRanda starBase2
3747 chrX 73046780 73046780 1 - C T SKCM 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCGAAGACCTGAGTTGGATGGAAGTCTC < 41bp 1 0.356132114293114 1 0.398927241563797 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046780 . . 0 20 hm5C_associated_SNPs_36175 0 0 1 3 73046772 73046795 lncRNA hsa-miR-510-5p XIST miRanda starBase2
3748 chrX 73046780 73046780 1 - C T SKCM 73046786 - 73046766 73046806 41 AGAGGGTGGCCTGAATTGGACCGAAGGCCTGAGTTGGATGG AGAGGGTGGCCTGAATTGGACCGAAGACCTGAGTTGGATGG < 41bp 1 0.347181856227942 1 0.232086509466171 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046786 chrX:73046780 . . 0 27 hm5C_associated_SNPs_36176 0 0 1 3 73046776 73046796 lncRNA hsa-miR-1245b-5p XIST miRanda starBase2
3749 chrX 73046780 73046780 1 - C T SKCM 73046786 - 73046766 73046806 41 AGAGGGTGGCCTGAATTGGACCGAAGGCCTGAGTTGGATGG AGAGGGTGGCCTGAATTGGACCGAAGACCTGAGTTGGATGG < 41bp 1 0.347181856227942 1 0.232086509466171 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046786 chrX:73046780 . . 0 27 hm5C_associated_SNPs_36176 0 0 1 3 73046776 73046797 lncRNA hsa-miR-3142 XIST miRanda starBase2
3750 chrX 73046780 73046780 1 - C T SKCM 73046786 - 73046766 73046806 41 AGAGGGTGGCCTGAATTGGACCGAAGGCCTGAGTTGGATGG AGAGGGTGGCCTGAATTGGACCGAAGACCTGAGTTGGATGG < 41bp 1 0.347181856227942 1 0.232086509466171 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046786 chrX:73046780 . . 0 27 hm5C_associated_SNPs_36176 0 0 1 3 73046772 73046795 lncRNA hsa-miR-510-5p XIST miRanda starBase2
3751 chrX 73046780 73046780 1 - C T SKCM 73046797 - 73046777 73046817 41 GCCAAGAAAACAGAGGGTGGCCTGAATTGGACCGAAGGCCT GCCAAGAAAACAGAGGGTGGCCTGAATTGGACCGAAGACCT < 41bp 1 0.269304192636264 1 0.210192114114761 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046797 chrX:73046780 . . 0 38 hm5C_associated_SNPs_36177 0 0 1 3 73046776 73046796 lncRNA hsa-miR-1245b-5p XIST miRanda starBase2
3752 chrX 73046780 73046780 1 - C T SKCM 73046797 - 73046777 73046817 41 GCCAAGAAAACAGAGGGTGGCCTGAATTGGACCGAAGGCCT GCCAAGAAAACAGAGGGTGGCCTGAATTGGACCGAAGACCT < 41bp 1 0.269304192636264 1 0.210192114114761 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046797 chrX:73046780 . . 0 38 hm5C_associated_SNPs_36177 0 0 1 3 73046776 73046797 lncRNA hsa-miR-3142 XIST miRanda starBase2
3753 chrX 73046780 73046780 1 - C T SKCM 73046797 - 73046777 73046817 41 GCCAAGAAAACAGAGGGTGGCCTGAATTGGACCGAAGGCCT GCCAAGAAAACAGAGGGTGGCCTGAATTGGACCGAAGACCT < 41bp 1 0.269304192636264 1 0.210192114114761 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046797 chrX:73046780 . . 0 38 hm5C_associated_SNPs_36177 0 0 1 3 73046772 73046795 lncRNA hsa-miR-510-5p XIST miRanda starBase2
3754 chr1 40424494 40424494 1 + C T SKCM 40424495 + 40424475 40424515 41 TGCCTGGGTCGCCTTATGCCCTGGTGAGTAGAATATGCCCC TGCCTGGGTCGCCTTATGCTCTGGTGAGTAGAATATGCCCC < 41bp 1 0.780497966519915 1 0.543394088745117 experiment 0.439004066960169 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40424495 chr1:40424494 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_36195 0 0 0 1 40424488 40424497 mRNA hsa-miR-539 MFSD2A miRanda miRanda
3755 chr10 135197568 135197568 1 + C T SKCM 135197583 + 135197563 135197603 41 TCTTCCTGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC TCTTCTTGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC < 41bp 1 0.0639158788198692 1 0.0445739030838013 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PAOX ENSG00000148832 CDS Human protein_coding chr10:135197583 chr10:135197568 synonymous SNV . 0 6 hm5C_associated_SNPs_36254 0 0 0 1 135197561 135197580 mRNA hsa-miR-371-5p PAOX miRanda miRanda
3756 chrX 73046067 73046067 1 - G A SKCM 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATGTGAAGA < 41bp 1 0.104181348689015 1 0.491788625717163 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046067 . . 0 23 hm5C_associated_SNPs_36294 0 0 1 14 73046051 73046071 lncRNA hsa-miR-130a-5p XIST miRanda starBase2
3757 chrX 73046067 73046067 1 - G A SKCM 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATGTGAAGA < 41bp 1 0.104181348689015 1 0.491788625717163 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046067 . . 0 23 hm5C_associated_SNPs_36294 0 0 1 14 73046051 73046071 lncRNA hsa-miR-23a-3p XIST miRanda starBase2
3758 chrX 73046067 73046067 1 - G A SKCM 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATGTGAAGA < 41bp 1 0.104181348689015 1 0.491788625717163 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046067 . . 0 23 hm5C_associated_SNPs_36294 0 0 1 14 73046051 73046071 lncRNA hsa-miR-23b-3p XIST miRanda starBase2
3759 chrX 73046067 73046067 1 - G A SKCM 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATGTGAAGA < 41bp 1 0.104181348689015 1 0.491788625717163 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046067 . . 0 23 hm5C_associated_SNPs_36294 0 0 1 14 73046051 73046072 lncRNA hsa-miR-23c XIST miRanda starBase2
3760 chrX 73046067 73046067 1 - G A SKCM 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATGTGAAGA < 41bp 1 0.104181348689015 1 0.491788625717163 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046067 . . 0 23 hm5C_associated_SNPs_36294 0 0 1 14 73046062 73046085 lncRNA hsa-miR-518d-5p XIST miRanda starBase2
3761 chrX 73046067 73046067 1 - G A SKCM 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATGTGAAGA < 41bp 1 0.104181348689015 1 0.491788625717163 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046067 . . 0 23 hm5C_associated_SNPs_36294 0 0 1 14 73046062 73046085 lncRNA hsa-miR-518e-5p XIST miRanda starBase2
3762 chrX 73046067 73046067 1 - G A SKCM 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATGTGAAGA < 41bp 1 0.104181348689015 1 0.491788625717163 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046067 . . 0 23 hm5C_associated_SNPs_36294 0 0 1 14 73046062 73046085 lncRNA hsa-miR-518f-5p XIST miRanda starBase2
3763 chrX 73046067 73046067 1 - G A SKCM 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATGTGAAGA < 41bp 1 0.104181348689015 1 0.491788625717163 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046067 . . 0 23 hm5C_associated_SNPs_36294 0 0 1 14 73046062 73046085 lncRNA hsa-miR-519a-5p XIST miRanda starBase2
3764 chrX 73046067 73046067 1 - G A SKCM 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATGTGAAGA < 41bp 1 0.104181348689015 1 0.491788625717163 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046067 . . 0 23 hm5C_associated_SNPs_36294 0 0 1 14 73046062 73046085 lncRNA hsa-miR-519b-5p XIST miRanda starBase2
3765 chrX 73046067 73046067 1 - G A SKCM 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATGTGAAGA < 41bp 1 0.104181348689015 1 0.491788625717163 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046067 . . 0 23 hm5C_associated_SNPs_36294 0 0 1 14 73046062 73046085 lncRNA hsa-miR-519c-5p XIST miRanda starBase2
3766 chrX 73046067 73046067 1 - G A SKCM 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATGTGAAGA < 41bp 1 0.104181348689015 1 0.491788625717163 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046067 . . 0 23 hm5C_associated_SNPs_36294 0 0 1 14 73046062 73046085 lncRNA hsa-miR-520c-5p XIST miRanda starBase2
3767 chrX 73046067 73046067 1 - G A SKCM 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATGTGAAGA < 41bp 1 0.104181348689015 1 0.491788625717163 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046067 . . 0 23 hm5C_associated_SNPs_36294 0 0 1 14 73046062 73046085 lncRNA hsa-miR-522-5p XIST miRanda starBase2
3768 chrX 73046067 73046067 1 - G A SKCM 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATGTGAAGA < 41bp 1 0.104181348689015 1 0.491788625717163 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046067 . . 0 23 hm5C_associated_SNPs_36294 0 0 1 14 73046062 73046085 lncRNA hsa-miR-523-5p XIST miRanda starBase2
3769 chrX 73046067 73046067 1 - G A SKCM 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATGTGAAGA < 41bp 1 0.104181348689015 1 0.491788625717163 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046067 . . 0 23 hm5C_associated_SNPs_36294 0 0 1 14 73046062 73046085 lncRNA hsa-miR-526a XIST miRanda starBase2
3770 chrX 73046067 73046067 1 - G A SKCM 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATG < 41bp 1 0.240505662213467 1 0.242459177970886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046067 . . 0 29 hm5C_associated_SNPs_36295 0 0 1 14 73046051 73046071 lncRNA hsa-miR-130a-5p XIST miRanda starBase2
3771 chrX 73046067 73046067 1 - G A SKCM 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATG < 41bp 1 0.240505662213467 1 0.242459177970886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046067 . . 0 29 hm5C_associated_SNPs_36295 0 0 1 14 73046051 73046071 lncRNA hsa-miR-23a-3p XIST miRanda starBase2
3772 chrX 73046067 73046067 1 - G A SKCM 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATG < 41bp 1 0.240505662213467 1 0.242459177970886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046067 . . 0 29 hm5C_associated_SNPs_36295 0 0 1 14 73046051 73046071 lncRNA hsa-miR-23b-3p XIST miRanda starBase2
3773 chrX 73046067 73046067 1 - G A SKCM 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATG < 41bp 1 0.240505662213467 1 0.242459177970886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046067 . . 0 29 hm5C_associated_SNPs_36295 0 0 1 14 73046051 73046072 lncRNA hsa-miR-23c XIST miRanda starBase2
3774 chrX 73046067 73046067 1 - G A SKCM 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATG < 41bp 1 0.240505662213467 1 0.242459177970886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046067 . . 0 29 hm5C_associated_SNPs_36295 0 0 1 14 73046062 73046085 lncRNA hsa-miR-518d-5p XIST miRanda starBase2
3775 chrX 73046067 73046067 1 - G A SKCM 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATG < 41bp 1 0.240505662213467 1 0.242459177970886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046067 . . 0 29 hm5C_associated_SNPs_36295 0 0 1 14 73046062 73046085 lncRNA hsa-miR-518e-5p XIST miRanda starBase2
3776 chrX 73046067 73046067 1 - G A SKCM 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATG < 41bp 1 0.240505662213467 1 0.242459177970886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046067 . . 0 29 hm5C_associated_SNPs_36295 0 0 1 14 73046062 73046085 lncRNA hsa-miR-518f-5p XIST miRanda starBase2
3777 chrX 73046067 73046067 1 - G A SKCM 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATG < 41bp 1 0.240505662213467 1 0.242459177970886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046067 . . 0 29 hm5C_associated_SNPs_36295 0 0 1 14 73046062 73046085 lncRNA hsa-miR-519a-5p XIST miRanda starBase2
3778 chrX 73046067 73046067 1 - G A SKCM 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATG < 41bp 1 0.240505662213467 1 0.242459177970886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046067 . . 0 29 hm5C_associated_SNPs_36295 0 0 1 14 73046062 73046085 lncRNA hsa-miR-519b-5p XIST miRanda starBase2
3779 chrX 73046067 73046067 1 - G A SKCM 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATG < 41bp 1 0.240505662213467 1 0.242459177970886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046067 . . 0 29 hm5C_associated_SNPs_36295 0 0 1 14 73046062 73046085 lncRNA hsa-miR-519c-5p XIST miRanda starBase2
3780 chrX 73046067 73046067 1 - G A SKCM 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATG < 41bp 1 0.240505662213467 1 0.242459177970886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046067 . . 0 29 hm5C_associated_SNPs_36295 0 0 1 14 73046062 73046085 lncRNA hsa-miR-520c-5p XIST miRanda starBase2
3781 chrX 73046067 73046067 1 - G A SKCM 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATG < 41bp 1 0.240505662213467 1 0.242459177970886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046067 . . 0 29 hm5C_associated_SNPs_36295 0 0 1 14 73046062 73046085 lncRNA hsa-miR-522-5p XIST miRanda starBase2
3782 chrX 73046067 73046067 1 - G A SKCM 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATG < 41bp 1 0.240505662213467 1 0.242459177970886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046067 . . 0 29 hm5C_associated_SNPs_36295 0 0 1 14 73046062 73046085 lncRNA hsa-miR-523-5p XIST miRanda starBase2
3783 chrX 73046067 73046067 1 - G A SKCM 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATG < 41bp 1 0.240505662213467 1 0.242459177970886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046067 . . 0 29 hm5C_associated_SNPs_36295 0 0 1 14 73046062 73046085 lncRNA hsa-miR-526a XIST miRanda starBase2
3784 chrX 73046067 73046067 1 - G A SKCM 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAAT < 41bp 1 0.109271259701581 1 0.289082527160645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046067 . . 0 30 hm5C_associated_SNPs_36296 0 0 1 14 73046051 73046071 lncRNA hsa-miR-130a-5p XIST miRanda starBase2
3785 chrX 73046067 73046067 1 - G A SKCM 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAAT < 41bp 1 0.109271259701581 1 0.289082527160645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046067 . . 0 30 hm5C_associated_SNPs_36296 0 0 1 14 73046051 73046071 lncRNA hsa-miR-23a-3p XIST miRanda starBase2
3786 chrX 73046067 73046067 1 - G A SKCM 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAAT < 41bp 1 0.109271259701581 1 0.289082527160645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046067 . . 0 30 hm5C_associated_SNPs_36296 0 0 1 14 73046051 73046071 lncRNA hsa-miR-23b-3p XIST miRanda starBase2
3787 chrX 73046067 73046067 1 - G A SKCM 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAAT < 41bp 1 0.109271259701581 1 0.289082527160645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046067 . . 0 30 hm5C_associated_SNPs_36296 0 0 1 14 73046051 73046072 lncRNA hsa-miR-23c XIST miRanda starBase2
3788 chrX 73046067 73046067 1 - G A SKCM 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAAT < 41bp 1 0.109271259701581 1 0.289082527160645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046067 . . 0 30 hm5C_associated_SNPs_36296 0 0 1 14 73046062 73046085 lncRNA hsa-miR-518d-5p XIST miRanda starBase2
3789 chrX 73046067 73046067 1 - G A SKCM 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAAT < 41bp 1 0.109271259701581 1 0.289082527160645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046067 . . 0 30 hm5C_associated_SNPs_36296 0 0 1 14 73046062 73046085 lncRNA hsa-miR-518e-5p XIST miRanda starBase2
3790 chrX 73046067 73046067 1 - G A SKCM 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAAT < 41bp 1 0.109271259701581 1 0.289082527160645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046067 . . 0 30 hm5C_associated_SNPs_36296 0 0 1 14 73046062 73046085 lncRNA hsa-miR-518f-5p XIST miRanda starBase2
3791 chrX 73046067 73046067 1 - G A SKCM 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAAT < 41bp 1 0.109271259701581 1 0.289082527160645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046067 . . 0 30 hm5C_associated_SNPs_36296 0 0 1 14 73046062 73046085 lncRNA hsa-miR-519a-5p XIST miRanda starBase2
3792 chrX 73046067 73046067 1 - G A SKCM 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAAT < 41bp 1 0.109271259701581 1 0.289082527160645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046067 . . 0 30 hm5C_associated_SNPs_36296 0 0 1 14 73046062 73046085 lncRNA hsa-miR-519b-5p XIST miRanda starBase2
3793 chrX 73046067 73046067 1 - G A SKCM 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAAT < 41bp 1 0.109271259701581 1 0.289082527160645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046067 . . 0 30 hm5C_associated_SNPs_36296 0 0 1 14 73046062 73046085 lncRNA hsa-miR-519c-5p XIST miRanda starBase2
3794 chrX 73046067 73046067 1 - G A SKCM 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAAT < 41bp 1 0.109271259701581 1 0.289082527160645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046067 . . 0 30 hm5C_associated_SNPs_36296 0 0 1 14 73046062 73046085 lncRNA hsa-miR-520c-5p XIST miRanda starBase2
3795 chrX 73046067 73046067 1 - G A SKCM 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAAT < 41bp 1 0.109271259701581 1 0.289082527160645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046067 . . 0 30 hm5C_associated_SNPs_36296 0 0 1 14 73046062 73046085 lncRNA hsa-miR-522-5p XIST miRanda starBase2
3796 chrX 73046067 73046067 1 - G A SKCM 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAAT < 41bp 1 0.109271259701581 1 0.289082527160645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046067 . . 0 30 hm5C_associated_SNPs_36296 0 0 1 14 73046062 73046085 lncRNA hsa-miR-523-5p XIST miRanda starBase2
3797 chrX 73046067 73046067 1 - G A SKCM 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAAT < 41bp 1 0.109271259701581 1 0.289082527160645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046067 . . 0 30 hm5C_associated_SNPs_36296 0 0 1 14 73046062 73046085 lncRNA hsa-miR-526a XIST miRanda starBase2
3798 chr1 242052799 242052799 1 + C T SKCM 242052812 + 242052792 242052832 41 AAGAAACCCCTGTCCCCAGTCAGAGATAACATCCAACTAAC AAGAAACTCCTGTCCCCAGTCAGAGATAACATCCAACTAAC < 41bp 1 0.718555357119246 1 0.953845798969269 experiment 0.562889285761508 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242052812 chr1:242052799 nonsynonymous SNV 0.993 3 8 hm5C_associated_SNPs_36301 0 0 1 1 242052790 242052811 mRNA hsa-miR-491-5p EXO1 miRanda miRanda
3799 chr15 25222160 25222160 1 + G A SKCM 25222166 + 25222146 25222186 41 TGTCCGAGGAGTTGGGGGACCATCCCAGCAGGTGAGGAACC TGTCCGAGGAGTTGAGGGACCATCCCAGCAGGTGAGGAACC < 41bp 1 0.13006514616044 1 0.159327447414398 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25222166 chr15:25222160 nonsynonymous SNV 0.967 3 15 hm5C_associated_SNPs_36308 0 0 1 1 25222157 25222176 mRNA hsa-miR-370 SNURF miRanda miRanda
3800 chrX 7171306 7171306 1 + G A SKCM 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCAAACATCATCCTGGTGATGGCTGACGA < 41bp 1 0.292431980773345 1 0.0695810616016388 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171306 synonymous SNV . 0 15 hm5C_associated_SNPs_36317 0 0 1 2 7171297 7171319 mRNA hsa-miR-125a-3p STS miRanda miRanda
3801 chrX 7171306 7171306 1 + G A SKCM 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCAAACATCATCCTGGTGATGGCTGACGA < 41bp 1 0.292431980773345 1 0.0695810616016388 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171306 synonymous SNV . 0 15 hm5C_associated_SNPs_36317 0 0 1 2 7171295 7171316 mRNA hsa-miR-190b STS miRanda miRanda
3802 chr20 61292522 61292522 1 + G T SKCM 61292526 + 61292506 61292546 41 AAACCATCAGAGACCTGCCTCTGTAAGGACCGGAGTCGGGA AAACCATCAGAGACCTTCCTCTGTAAGGACCGGAGTCGGGA < 41bp 1 0.432289590787765 1 0.284180849790573 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61292526 chr20:61292522 synonymous SNV . 0 17 hm5C_associated_SNPs_36411 0 0 1 1 61292512 61292527 mRNA hsa-miR-185 SLCO4A1 miRanda miRanda
3803 chr12 110457005 110457005 1 + C T SKCM 110457008 + 110456988 110457028 41 GTCACCACCGAACGCTTCGACCTTTCCCAAGAAATGGAGCG GTCACCACCGAACGCTTTGACCTTTCCCAAGAAATGGAGCG < 41bp 1 0.0224049450839576 1 0.0860740542411804 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110457008 chr12:110457005 synonymous SNV . 0 18 hm5C_associated_SNPs_36507 0 0 1 1 110457005 110457027 mRNA hsa-miR-136 ANKRD13A miRanda miRanda
3804 chrX 73046482 73046482 1 - C T SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATAAGAACCCTAAAC < 41bp 1 0.597248496032239 1 0.748787760734558 experiment 0.805503007935522 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046482 . . 0 29 hm5C_associated_SNPs_36514 0 0 1 2 73046461 73046482 lncRNA hsa-miR-98-5p XIST miRanda starBase2
3805 chrX 73046482 73046482 1 - C T SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATAAGAACCCTAAAC < 41bp 1 0.597248496032239 1 0.748787760734558 experiment 0.805503007935522 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046482 . . 0 29 hm5C_associated_SNPs_36514 0 0 1 2 73046467 73046487 lncRNA hsa-miR-629-5p XIST miRanda starBase2
3806 chrX 73046538 73046538 1 - G T SKCM 73046526 - 73046506 73046546 41 TGGAGGCCCATGACCCAGAACCCAGGAAGGATAGAAGCTTG TGGAGGCCAATGACCCAGAACCCAGGAAGGATAGAAGCTTG < 41bp 1 0.186254145131624 1 0.27326512336731 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046526 chrX:73046538 . . 0 9 hm5C_associated_SNPs_36552 0 0 1 2 73046519 73046540 lncRNA hsa-miR-1343-3p XIST miRanda starBase2
3807 chrX 73046538 73046538 1 - G T SKCM 73046526 - 73046506 73046546 41 TGGAGGCCCATGACCCAGAACCCAGGAAGGATAGAAGCTTG TGGAGGCCAATGACCCAGAACCCAGGAAGGATAGAAGCTTG < 41bp 1 0.186254145131624 1 0.27326512336731 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046526 chrX:73046538 . . 0 9 hm5C_associated_SNPs_36552 0 0 1 2 73046519 73046539 lncRNA hsa-miR-6783-3p XIST miRanda starBase2
3808 chrX 73046538 73046538 1 - G T SKCM 73046532 - 73046512 73046552 41 GGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAGA GGAATCTGGAGGCCAATGACCCAGAACCCAGGAAGGATAGA < 41bp 1 0.296232177179573 1 0.399207472801208 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046532 chrX:73046538 . . 0 15 hm5C_associated_SNPs_36553 0 0 1 2 73046519 73046540 lncRNA hsa-miR-1343-3p XIST miRanda starBase2
3809 chrX 73046538 73046538 1 - G T SKCM 73046532 - 73046512 73046552 41 GGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAGA GGAATCTGGAGGCCAATGACCCAGAACCCAGGAAGGATAGA < 41bp 1 0.296232177179573 1 0.399207472801208 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046532 chrX:73046538 . . 0 15 hm5C_associated_SNPs_36553 0 0 1 2 73046519 73046539 lncRNA hsa-miR-6783-3p XIST miRanda starBase2
3810 chrX 73046538 73046538 1 - G T SKCM 73046533 - 73046513 73046553 41 CGGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAG CGGAATCTGGAGGCCAATGACCCAGAACCCAGGAAGGATAG < 41bp 1 0.281323794541134 1 0.321939051151276 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046533 chrX:73046538 . . 0 16 hm5C_associated_SNPs_36554 0 0 1 2 73046519 73046540 lncRNA hsa-miR-1343-3p XIST miRanda starBase2
3811 chrX 73046538 73046538 1 - G T SKCM 73046533 - 73046513 73046553 41 CGGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAG CGGAATCTGGAGGCCAATGACCCAGAACCCAGGAAGGATAG < 41bp 1 0.281323794541134 1 0.321939051151276 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046533 chrX:73046538 . . 0 16 hm5C_associated_SNPs_36554 0 0 1 2 73046519 73046539 lncRNA hsa-miR-6783-3p XIST miRanda starBase2
3812 chrX 73046538 73046538 1 - G T SKCM 73046539 - 73046519 73046559 41 AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA AACGGCCGGAATCTGGAGGCCAATGACCCAGAACCCAGGAA < 41bp 1 0.172118364384849 1 0.445540517568588 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046539 chrX:73046538 . . 0 22 hm5C_associated_SNPs_36555 0 0 1 2 73046519 73046540 lncRNA hsa-miR-1343-3p XIST miRanda starBase2
3813 chrX 73046538 73046538 1 - G T SKCM 73046539 - 73046519 73046559 41 AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA AACGGCCGGAATCTGGAGGCCAATGACCCAGAACCCAGGAA < 41bp 1 0.172118364384849 1 0.445540517568588 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046539 chrX:73046538 . . 0 22 hm5C_associated_SNPs_36555 0 0 1 2 73046519 73046539 lncRNA hsa-miR-6783-3p XIST miRanda starBase2
3814 chr16 56660799 56660799 1 + T C STAD 56660787 + 56660767 56660807 41 CTCTCACTCTCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTG CTCTCACTCTCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTG < 41bp 1 0.440432971162156 1 0.14299863576889 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MT1E ENSG00000169715 CDS Human protein_coding chr16:56660787 chr16:56660799 synonymous SNV . 0 33 hm5C_associated_SNPs_36604 0 0 1 2 56660788 56660808 mRNA hsa-miR-214 MT1E miRanda miRanda
3815 chr16 56660799 56660799 1 + T C STAD 56660787 + 56660767 56660807 41 CTCTCACTCTCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTG CTCTCACTCTCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTG < 41bp 1 0.440432971162156 1 0.14299863576889 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MT1E ENSG00000169715 CDS Human protein_coding chr16:56660787 chr16:56660799 synonymous SNV . 0 33 hm5C_associated_SNPs_36604 0 0 1 2 56660787 56660805 mRNA hsa-miR-873 MT1E miRanda miRanda
3816 chr16 56660799 56660799 1 + T C STAD 56660788 + 56660768 56660808 41 TCTCACTCTCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTGC TCTCACTCTCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTGC < 41bp 1 0.661104860714006 1 0.342791974544525 experiment 0.677790278571988 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MT1E ENSG00000169715 CDS Human protein_coding chr16:56660788 chr16:56660799 synonymous SNV . 0 32 hm5C_associated_SNPs_36605 0 0 1 2 56660788 56660808 mRNA hsa-miR-214 MT1E miRanda miRanda
3817 chr16 56660799 56660799 1 + T C STAD 56660788 + 56660768 56660808 41 TCTCACTCTCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTGC TCTCACTCTCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTGC < 41bp 1 0.661104860714006 1 0.342791974544525 experiment 0.677790278571988 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MT1E ENSG00000169715 CDS Human protein_coding chr16:56660788 chr16:56660799 synonymous SNV . 0 32 hm5C_associated_SNPs_36605 0 0 1 2 56660787 56660805 mRNA hsa-miR-873 MT1E miRanda miRanda
3818 chr16 56660799 56660799 1 + T C STAD 56660789 + 56660769 56660809 41 CTCACTCTCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTGCC CTCACTCTCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTGCC < 41bp 1 0.71999130251666 1 0.776679158210754 experiment 0.560017394966679 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MT1E ENSG00000169715 CDS Human protein_coding chr16:56660789 chr16:56660799 synonymous SNV . 0 31 hm5C_associated_SNPs_36606 0 0 1 2 56660788 56660808 mRNA hsa-miR-214 MT1E miRanda miRanda
3819 chr16 56660799 56660799 1 + T C STAD 56660789 + 56660769 56660809 41 CTCACTCTCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTGCC CTCACTCTCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTGCC < 41bp 1 0.71999130251666 1 0.776679158210754 experiment 0.560017394966679 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MT1E ENSG00000169715 CDS Human protein_coding chr16:56660789 chr16:56660799 synonymous SNV . 0 31 hm5C_associated_SNPs_36606 0 0 1 2 56660787 56660805 mRNA hsa-miR-873 MT1E miRanda miRanda
3820 chr10 17275857 17275857 1 + G A STAD 17275853 + 17275833 17275873 41 AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAA AGCCTGACCTCACGGCTGCCCTGCATGACGTACGTCAGCAA < 41bp 1 0.785660662917816 1 0.899891793727875 experiment 0.428678674164368 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275853 chr10:17275857 nonsynonymous SNV 0.814 3 25 hm5C_associated_SNPs_36652 0 0 1 1 17275853 17275876 mRNA hsa-miR-137 VIM miRanda miRanda
3821 chr10 17275857 17275857 1 + G A STAD 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCACGGCTGCCCTGCATGACGTACGTCAGCAATAT < 41bp 1 0.350498423124269 1 0.0388129055500031 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275857 nonsynonymous SNV 0.814 3 22 hm5C_associated_SNPs_36653 0 0 1 1 17275853 17275876 mRNA hsa-miR-137 VIM miRanda miRanda
3822 chr10 17275857 17275857 1 + G A STAD 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCACGGCTGCCCTGCATGACGTACGTCAGCAATATGAAAG < 41bp 1 0.134036298459383 1 0.0206911563873291 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275857 nonsynonymous SNV 0.814 3 17 hm5C_associated_SNPs_36654 0 0 1 1 17275853 17275876 mRNA hsa-miR-137 VIM miRanda miRanda
3823 chr19 13010517 13010517 1 + T G STAD 13010519 + 13010499 13010539 41 ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAAGA ATTTCCCTTCTGAAGTCGGTCAGATGTGTTCCTTAAAAAGA < 41bp 1 0.355597148022588 1 0.355500847101212 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13010519 chr19:13010517 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_36699 0 0 1 1 13010513 13010533 mRNA hsa-miR-873 GCDH miRanda miRanda
3824 chrX 114877715 114877715 1 + A G STAD 114877725 + 114877705 114877745 41 TGATGTTGTCAGTGGAAACCCCAAACTCAACTTAGCTTTCG TGATGTTGTCGGTGGAAACCCCAAACTCAACTTAGCTTTCG < 41bp 1 0.444412266989058 1 0.27906322479248 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLS3 ENSG00000102024 CDS Human protein_coding chrX:114877725 chrX:114877715 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_36711 0 0 1 1 114877691 114877715 mRNA hsa-miR-494 PLS3 miRanda miRanda
3825 chr16 4700454 4700454 1 + T C STAD 4700472 + 4700452 4700492 41 GATCTGAACTTCCTGGGCAGCCGCCCGGTCCAGGTGGGTCT GACCTGAACTTCCTGGGCAGCCGCCCGGTCCAGGTGGGTCT < 41bp 1 0.0946833178794894 1 0.0814388394355774 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4700472 chr16:4700454 synonymous SNV . 0 3 hm5C_associated_SNPs_36727 0 0 1 1 4700430 4700454 mRNA hsa-miR-145 MGRN1 miRanda miRanda
3826 chr2 217366124 217366124 1 + G A STAD 217366129 + 217366109 217366149 41 GGAGTTGAAAGACCAGTAGACGCTCCTCTACTCTTTGAGAC GGAGTTGAAAGACCAATAGACGCTCCTCTACTCTTTGAGAC < 41bp 1 0.467355423025001 1 0.0951938629150391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217366129 chr2:217366124 synonymous SNV . 0 16 hm5C_associated_SNPs_36732 0 0 1 1 217366112 217366136 mRNA hsa-miR-28-5p RPL37A miRanda miRanda
3827 chr2 217366124 217366124 1 + G A STAD 217366131 + 217366111 217366151 41 AGTTGAAAGACCAGTAGACGCTCCTCTACTCTTTGAGACAT AGTTGAAAGACCAATAGACGCTCCTCTACTCTTTGAGACAT < 41bp 1 0.759551253417067 1 0.0619652271270752 experiment 0.480897493165866 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217366131 chr2:217366124 synonymous SNV . 0 14 hm5C_associated_SNPs_36733 0 0 1 1 217366112 217366136 mRNA hsa-miR-28-5p RPL37A miRanda miRanda
3828 chr16 72048403 72048403 1 + A G STAD 72048390 + 72048370 72048410 41 AGGAAGTGAGAGTTCTGGGCCATAAATTCCGAAATCCAGTA AGGAAGTGAGAGTTCTGGGCCATAAATTCCGAAGTCCAGTA < 41bp 1 0.301102302880511 1 0.0599216222763062 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048390 chr16:72048403 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_36796 0 0 1 1 72048382 72048407 mRNA hsa-miR-876-5p DHODH miRanda miRanda
3829 chr4 53579527 53579527 1 + G C STAD 53579508 + 53579488 53579528 41 AGAGAAGAGACTGGAAAGCTCCTCTTTGGATCCTGTCTGGA AGAGAAGAGACTGGAAAGCTCCTCTTTGGATCCTGTCTGCA < 41bp 1 0.0846827187924015 1 0.042996734380722 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579508 chr4:53579527 . . 0 40 hm5C_associated_SNPs_36863 0 0 1 1 53579514 53579536 mRNA hsa-miR-758 SNORA26 miRanda miRanda
3830 chr4 53579527 53579527 1 + G C STAD 53579509 + 53579489 53579529 41 GAGAAGAGACTGGAAAGCTCCTCTTTGGATCCTGTCTGGAG GAGAAGAGACTGGAAAGCTCCTCTTTGGATCCTGTCTGCAG < 41bp 1 0.260351012357107 1 0.130088567733765 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579509 chr4:53579527 . . 0 39 hm5C_associated_SNPs_36864 0 0 1 1 53579514 53579536 mRNA hsa-miR-758 SNORA26 miRanda miRanda
3831 chr4 53579527 53579527 1 + G C STAD 53579519 + 53579499 53579539 41 TGGAAAGCTCCTCTTTGGATCCTGTCTGGAGTCACAACTGA TGGAAAGCTCCTCTTTGGATCCTGTCTGCAGTCACAACTGA < 41bp 1 0.073943721638046 1 0.198455214500427 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579519 chr4:53579527 . . 0 29 hm5C_associated_SNPs_36865 0 0 1 1 53579514 53579536 mRNA hsa-miR-758 SNORA26 miRanda miRanda
3832 chr4 53579527 53579527 1 + G C STAD 53579520 + 53579500 53579540 41 GGAAAGCTCCTCTTTGGATCCTGTCTGGAGTCACAACTGAA GGAAAGCTCCTCTTTGGATCCTGTCTGCAGTCACAACTGAA < 41bp 1 0.0982159299131185 1 0.0695280730724335 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579520 chr4:53579527 . . 0 28 hm5C_associated_SNPs_36866 0 0 1 1 53579514 53579536 mRNA hsa-miR-758 SNORA26 miRanda miRanda
3833 chr4 53579527 53579527 1 + G C STAD 53579531 + 53579511 53579551 41 CTTTGGATCCTGTCTGGAGTCACAACTGAACCAGAAAAAGT CTTTGGATCCTGTCTGCAGTCACAACTGAACCAGAAAAAGT < 41bp 1 0.53910391307555 1 0.549319505691528 experiment 0.921792173848901 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579531 chr4:53579527 . . 0 17 hm5C_associated_SNPs_36867 0 0 1 1 53579514 53579536 mRNA hsa-miR-758 SNORA26 miRanda miRanda
3834 chr4 53579527 53579527 1 + G C STAD 53579536 + 53579516 53579556 41 GATCCTGTCTGGAGTCACAACTGAACCAGAAAAAGTTTCGT GATCCTGTCTGCAGTCACAACTGAACCAGAAAAAGTTTCGT < 41bp 1 0.472462409511551 1 0.619613289833069 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579536 chr4:53579527 . . 0 12 hm5C_associated_SNPs_36868 0 0 1 1 53579514 53579536 mRNA hsa-miR-758 SNORA26 miRanda miRanda
3835 chr7 114302139 114302139 1 + T G STAD 114302124 + 114302104 114302144 41 CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTAGCC CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCGTAGCC < 41bp 1 0.238623804380077 1 0.32318526506424 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114302124 chr7:114302139 nonsynonymous SNV 0.998 5 36 hm5C_associated_SNPs_36888 0 0 1 4 114302124 114302145 mRNA hsa-miR-31 FOXP2 miRanda miRanda
3836 chr7 114302139 114302139 1 + T G STAD 114302124 + 114302104 114302144 41 CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTAGCC CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCGTAGCC < 41bp 1 0.238623804380077 1 0.32318526506424 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114302124 chr7:114302139 nonsynonymous SNV 0.998 5 36 hm5C_associated_SNPs_36888 0 0 1 4 114302134 114302157 mRNA hsa-miR-141 FOXP2 miRanda miRanda
3837 chr7 114302139 114302139 1 + T G STAD 114302124 + 114302104 114302144 41 CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTAGCC CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCGTAGCC < 41bp 1 0.238623804380077 1 0.32318526506424 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114302124 chr7:114302139 nonsynonymous SNV 0.998 5 36 hm5C_associated_SNPs_36888 0 0 1 4 114302134 114302157 mRNA hsa-miR-200a FOXP2 miRanda miRanda
3838 chr7 114302139 114302139 1 + T G STAD 114302124 + 114302104 114302144 41 CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTAGCC CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCGTAGCC < 41bp 1 0.238623804380077 1 0.32318526506424 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114302124 chr7:114302139 nonsynonymous SNV 0.998 5 36 hm5C_associated_SNPs_36888 0 0 1 4 114302139 114302162 mRNA hsa-miR-495 FOXP2 miRanda miRanda
3839 chr7 135333207 135333207 1 + A T STAD 135333200 + 135333180 135333220 41 GAGAATCACTACAAAAGAAACTTCTGGACATTGAAGGATTA GAGAATCACTACAAAAGAAACTTCTGGTCATTGAAGGATTA < 41bp 1 0.0647260782083815 1 0.0927473604679108 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135333200 chr7:135333207 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_36926 0 0 1 1 135333196 135333217 mRNA hsa-miR-205 NUP205 miRanda miRanda
3840 chr10 102824622 102824622 1 + T C STAD 102824602 + 102824582 102824622 41 GACCAGCTGAACTCTACAGGCATCCCCCAGCTGCGATCACT GACCAGCTGAACTCTACAGGCATCCCCCAGCTGCGATCACC < 41bp 1 0.0389411136064353 1 0.0369264185428619 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824602 chr10:102824622 nonsynonymous SNV 0.049 0 41 hm5C_associated_SNPs_36972 0 0 1 1 102824615 102824637 mRNA hsa-miR-873 KAZALD1 miRanda miRanda
3841 chr3 179104341 179104341 1 + T C STAD 179104323 + 179104303 179104343 41 GGACCACCCATGCCAAGGAGCGAGCCTTTAAACAGCAGTTT GGACCACCCATGCCAAGGAGCGAGCCTTTAAACAGCAGCTT < 41bp 1 0.403162863006912 1 0.427637100219727 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MFN1 ENSG00000171109 CDS Human protein_coding chr3:179104323 chr3:179104341 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_36985 0 0 1 1 179104334 179104356 mRNA hsa-miR-153 MFN1 miRanda miRanda
3842 chr10 89487102 89487102 1 + G A STAD 89487114 + 89487094 89487134 41 AAGACACGGCTGGAAGGGTGCAGCAAGTTTGTCCTGGCACA AAGACACGACTGGAAGGGTGCAGCAAGTTTGTCCTGGCACA < 41bp 1 0.740070370948432 1 0.601892411708832 experiment 0.519859258103136 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89487114 chr10:89487102 synonymous SNV . 0 9 hm5C_associated_SNPs_36994 0 0 0 1 89487079 89487102 mRNA hsa-miR-187 PAPSS2 miRanda miRanda
3843 chr20 57480479 57480479 1 + A G STAD 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGGGTGCGTGCCTGCTACGAACGCTCCAACGA < 41bp 1 0.572991956798792 1 0.367827594280243 experiment 0.854016086402415 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480479 synonymous SNV . 0 12 hm5C_associated_SNPs_36997 0 0 1 2 57480471 57480493 mRNA hsa-miR-15a GNAS miRanda miRanda
3844 chr20 57480479 57480479 1 + A G STAD 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGGGTGCGTGCCTGCTACGAACGCTCCAACGA < 41bp 1 0.572991956798792 1 0.367827594280243 experiment 0.854016086402415 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480479 synonymous SNV . 0 12 hm5C_associated_SNPs_36997 0 0 1 2 57480471 57480493 mRNA hsa-miR-16 GNAS miRanda miRanda
3845 chrX 73046077 73046077 1 - C T STAD 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.214629444979524 1 0.792411208152771 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046077 . . 0 13 hm5C_associated_SNPs_37028 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518d-5p XIST miRanda starBase2
3846 chrX 73046077 73046077 1 - C T STAD 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.214629444979524 1 0.792411208152771 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046077 . . 0 13 hm5C_associated_SNPs_37028 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518e-5p XIST miRanda starBase2
3847 chrX 73046077 73046077 1 - C T STAD 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.214629444979524 1 0.792411208152771 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046077 . . 0 13 hm5C_associated_SNPs_37028 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518f-5p XIST miRanda starBase2
3848 chrX 73046077 73046077 1 - C T STAD 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.214629444979524 1 0.792411208152771 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046077 . . 0 13 hm5C_associated_SNPs_37028 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519a-5p XIST miRanda starBase2
3849 chrX 73046077 73046077 1 - C T STAD 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.214629444979524 1 0.792411208152771 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046077 . . 0 13 hm5C_associated_SNPs_37028 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519b-5p XIST miRanda starBase2
3850 chrX 73046077 73046077 1 - C T STAD 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.214629444979524 1 0.792411208152771 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046077 . . 0 13 hm5C_associated_SNPs_37028 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519c-5p XIST miRanda starBase2
3851 chrX 73046077 73046077 1 - C T STAD 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.214629444979524 1 0.792411208152771 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046077 . . 0 13 hm5C_associated_SNPs_37028 0 0 1 10 73046062 73046085 lncRNA hsa-miR-520c-5p XIST miRanda starBase2
3852 chrX 73046077 73046077 1 - C T STAD 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.214629444979524 1 0.792411208152771 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046077 . . 0 13 hm5C_associated_SNPs_37028 0 0 1 10 73046062 73046085 lncRNA hsa-miR-522-5p XIST miRanda starBase2
3853 chrX 73046077 73046077 1 - C T STAD 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.214629444979524 1 0.792411208152771 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046077 . . 0 13 hm5C_associated_SNPs_37028 0 0 1 10 73046062 73046085 lncRNA hsa-miR-523-5p XIST miRanda starBase2
3854 chrX 73046077 73046077 1 - C T STAD 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.214629444979524 1 0.792411208152771 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046077 . . 0 13 hm5C_associated_SNPs_37028 0 0 1 10 73046062 73046085 lncRNA hsa-miR-526a XIST miRanda starBase2
3855 chrX 73046077 73046077 1 - C T STAD 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATG < 41bp 1 0.304461681253248 1 0.437959045171738 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046077 . . 0 19 hm5C_associated_SNPs_37029 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518d-5p XIST miRanda starBase2
3856 chrX 73046077 73046077 1 - C T STAD 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATG < 41bp 1 0.304461681253248 1 0.437959045171738 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046077 . . 0 19 hm5C_associated_SNPs_37029 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518e-5p XIST miRanda starBase2
3857 chrX 73046077 73046077 1 - C T STAD 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATG < 41bp 1 0.304461681253248 1 0.437959045171738 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046077 . . 0 19 hm5C_associated_SNPs_37029 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518f-5p XIST miRanda starBase2
3858 chrX 73046077 73046077 1 - C T STAD 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATG < 41bp 1 0.304461681253248 1 0.437959045171738 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046077 . . 0 19 hm5C_associated_SNPs_37029 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519a-5p XIST miRanda starBase2
3859 chrX 73046077 73046077 1 - C T STAD 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATG < 41bp 1 0.304461681253248 1 0.437959045171738 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046077 . . 0 19 hm5C_associated_SNPs_37029 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519b-5p XIST miRanda starBase2
3860 chrX 73046077 73046077 1 - C T STAD 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATG < 41bp 1 0.304461681253248 1 0.437959045171738 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046077 . . 0 19 hm5C_associated_SNPs_37029 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519c-5p XIST miRanda starBase2
3861 chrX 73046077 73046077 1 - C T STAD 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATG < 41bp 1 0.304461681253248 1 0.437959045171738 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046077 . . 0 19 hm5C_associated_SNPs_37029 0 0 1 10 73046062 73046085 lncRNA hsa-miR-520c-5p XIST miRanda starBase2
3862 chrX 73046077 73046077 1 - C T STAD 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATG < 41bp 1 0.304461681253248 1 0.437959045171738 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046077 . . 0 19 hm5C_associated_SNPs_37029 0 0 1 10 73046062 73046085 lncRNA hsa-miR-522-5p XIST miRanda starBase2
3863 chrX 73046077 73046077 1 - C T STAD 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATG < 41bp 1 0.304461681253248 1 0.437959045171738 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046077 . . 0 19 hm5C_associated_SNPs_37029 0 0 1 10 73046062 73046085 lncRNA hsa-miR-523-5p XIST miRanda starBase2
3864 chrX 73046077 73046077 1 - C T STAD 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATG < 41bp 1 0.304461681253248 1 0.437959045171738 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046077 . . 0 19 hm5C_associated_SNPs_37029 0 0 1 10 73046062 73046085 lncRNA hsa-miR-526a XIST miRanda starBase2
3865 chrX 73046077 73046077 1 - C T STAD 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAAT < 41bp 1 0.137346435965371 1 0.136719018220901 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046077 . . 0 20 hm5C_associated_SNPs_37030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518d-5p XIST miRanda starBase2
3866 chrX 73046077 73046077 1 - C T STAD 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAAT < 41bp 1 0.137346435965371 1 0.136719018220901 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046077 . . 0 20 hm5C_associated_SNPs_37030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518e-5p XIST miRanda starBase2
3867 chrX 73046077 73046077 1 - C T STAD 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAAT < 41bp 1 0.137346435965371 1 0.136719018220901 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046077 . . 0 20 hm5C_associated_SNPs_37030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-518f-5p XIST miRanda starBase2
3868 chrX 73046077 73046077 1 - C T STAD 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAAT < 41bp 1 0.137346435965371 1 0.136719018220901 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046077 . . 0 20 hm5C_associated_SNPs_37030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519a-5p XIST miRanda starBase2
3869 chrX 73046077 73046077 1 - C T STAD 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAAT < 41bp 1 0.137346435965371 1 0.136719018220901 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046077 . . 0 20 hm5C_associated_SNPs_37030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519b-5p XIST miRanda starBase2
3870 chrX 73046077 73046077 1 - C T STAD 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAAT < 41bp 1 0.137346435965371 1 0.136719018220901 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046077 . . 0 20 hm5C_associated_SNPs_37030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-519c-5p XIST miRanda starBase2
3871 chrX 73046077 73046077 1 - C T STAD 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAAT < 41bp 1 0.137346435965371 1 0.136719018220901 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046077 . . 0 20 hm5C_associated_SNPs_37030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-520c-5p XIST miRanda starBase2
3872 chrX 73046077 73046077 1 - C T STAD 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAAT < 41bp 1 0.137346435965371 1 0.136719018220901 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046077 . . 0 20 hm5C_associated_SNPs_37030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-522-5p XIST miRanda starBase2
3873 chrX 73046077 73046077 1 - C T STAD 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAAT < 41bp 1 0.137346435965371 1 0.136719018220901 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046077 . . 0 20 hm5C_associated_SNPs_37030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-523-5p XIST miRanda starBase2
3874 chrX 73046077 73046077 1 - C T STAD 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAAT < 41bp 1 0.137346435965371 1 0.136719018220901 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046077 . . 0 20 hm5C_associated_SNPs_37030 0 0 1 10 73046062 73046085 lncRNA hsa-miR-526a XIST miRanda starBase2
3875 chr16 22271788 22271788 1 + C T STAD 22271796 + 22271776 22271816 41 TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAACATGGC TGCCCAGATTGGTCAGTGTTCAGTGACCTCGATAACATGGC < 41bp 1 0.330911833283654 1 0.617003500461578 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22271796 chr16:22271788 nonsynonymous SNV 0.987 1 13 hm5C_associated_SNPs_37045 0 0 1 2 22271783 22271793 mRNA hsa-miR-193a-3p EEF2K miRanda miRanda
3876 chr16 22271788 22271788 1 + C T STAD 22271796 + 22271776 22271816 41 TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAACATGGC TGCCCAGATTGGTCAGTGTTCAGTGACCTCGATAACATGGC < 41bp 1 0.330911833283654 1 0.617003500461578 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22271796 chr16:22271788 nonsynonymous SNV 0.987 1 13 hm5C_associated_SNPs_37045 0 0 1 2 22271783 22271793 mRNA hsa-miR-193b EEF2K miRanda miRanda
3877 chr3 129197018 129197018 1 + G A STAD 129197026 + 129197006 129197046 41 AGAAGTTTGAGTGCAACCTCCTGGTGGTGTGTGCCAATCAC AGAAGTTTGAGTACAACCTCCTGGTGGTGTGTGCCAATCAC < 41bp 1 0.601713678895449 1 0.218000203371048 experiment 0.796572642209102 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT122 ENSG00000163913 CDS Human protein_coding chr3:129197026 chr3:129197018 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_37047 0 0 1 1 129197017 129197038 mRNA hsa-miR-329 IFT122 miRanda miRanda
3878 chr4 119200402 119200402 1 + A G STAD 119200383 + 119200363 119200403 41 CCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAG CCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGGG < 41bp 1 0.0995789843234293 1 0.217243641614914 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200383 chr4:119200402 . . 0 40 hm5C_associated_SNPs_37103 0 0 1 2 119200387 119200410 mRNA hsa-miR-190 SNORA24 miRanda miRanda
3879 chr4 119200402 119200402 1 + A G STAD 119200383 + 119200363 119200403 41 CCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAG CCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGGG < 41bp 1 0.0995789843234293 1 0.217243641614914 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200383 chr4:119200402 . . 0 40 hm5C_associated_SNPs_37103 0 0 1 2 119200390 119200410 mRNA hsa-miR-190b SNORA24 miRanda miRanda
3880 chr4 119200402 119200402 1 + A G STAD 119200384 + 119200364 119200404 41 CTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGC CTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGGGC < 41bp 1 0.0211768432381916 1 0.129043459892273 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200384 chr4:119200402 . . 0 39 hm5C_associated_SNPs_37104 0 0 1 2 119200387 119200410 mRNA hsa-miR-190 SNORA24 miRanda miRanda
3881 chr4 119200402 119200402 1 + A G STAD 119200384 + 119200364 119200404 41 CTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGC CTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGGGC < 41bp 1 0.0211768432381916 1 0.129043459892273 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200384 chr4:119200402 . . 0 39 hm5C_associated_SNPs_37104 0 0 1 2 119200390 119200410 mRNA hsa-miR-190b SNORA24 miRanda miRanda
3882 chr4 119200402 119200402 1 + A G STAD 119200385 + 119200365 119200405 41 TGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCA TGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGGGCA < 41bp 1 0.180411181618255 1 0.251942455768585 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200385 chr4:119200402 . . 0 38 hm5C_associated_SNPs_37105 0 0 1 2 119200387 119200410 mRNA hsa-miR-190 SNORA24 miRanda miRanda
3883 chr4 119200402 119200402 1 + A G STAD 119200385 + 119200365 119200405 41 TGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCA TGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGGGCA < 41bp 1 0.180411181618255 1 0.251942455768585 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200385 chr4:119200402 . . 0 38 hm5C_associated_SNPs_37105 0 0 1 2 119200390 119200410 mRNA hsa-miR-190b SNORA24 miRanda miRanda
3884 chr4 119200402 119200402 1 + A G STAD 119200388 + 119200368 119200408 41 CAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATAT CAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGGGCATAT < 41bp 1 0.054724979217271 1 0.486092805862427 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200388 chr4:119200402 . . 0 35 hm5C_associated_SNPs_37106 0 0 1 2 119200387 119200410 mRNA hsa-miR-190 SNORA24 miRanda miRanda
3885 chr4 119200402 119200402 1 + A G STAD 119200388 + 119200368 119200408 41 CAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATAT CAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGGGCATAT < 41bp 1 0.054724979217271 1 0.486092805862427 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200388 chr4:119200402 . . 0 35 hm5C_associated_SNPs_37106 0 0 1 2 119200390 119200410 mRNA hsa-miR-190b SNORA24 miRanda miRanda
3886 chr4 119200402 119200402 1 + A G STAD 119200389 + 119200369 119200409 41 AGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATATC AGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGGGCATATC < 41bp 1 0.263292732082161 1 0.0870583951473236 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200389 chr4:119200402 . . 0 34 hm5C_associated_SNPs_37107 0 0 1 2 119200387 119200410 mRNA hsa-miR-190 SNORA24 miRanda miRanda
3887 chr4 119200402 119200402 1 + A G STAD 119200389 + 119200369 119200409 41 AGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATATC AGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGGGCATATC < 41bp 1 0.263292732082161 1 0.0870583951473236 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200389 chr4:119200402 . . 0 34 hm5C_associated_SNPs_37107 0 0 1 2 119200390 119200410 mRNA hsa-miR-190b SNORA24 miRanda miRanda
3888 chrX 7171305 7171305 1 + C T STAD 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCTGAACATCATCCTGGTGATGGCTGACGA < 41bp 1 0.269003429463427 1 0.0493785440921783 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171305 nonsynonymous SNV 0.104 5 14 hm5C_associated_SNPs_37112 0 0 1 2 7171297 7171319 mRNA hsa-miR-125a-3p STS miRanda miRanda
3889 chrX 7171305 7171305 1 + C T STAD 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCTGAACATCATCCTGGTGATGGCTGACGA < 41bp 1 0.269003429463427 1 0.0493785440921783 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171305 nonsynonymous SNV 0.104 5 14 hm5C_associated_SNPs_37112 0 0 1 2 7171295 7171316 mRNA hsa-miR-190b STS miRanda miRanda
3890 chr12 112460298 112460298 1 + T G STAD 112460318 + 112460298 112460338 41 TTAGACCAAGGGGAGGACTTCCCAGCATCAGAGATGACACG GTAGACCAAGGGGAGGACTTCCCAGCATCAGAGATGACACG < 41bp 1 0.295551820018782 1 0.416843563318253 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ERP29 ENSG00000089248 CDS Human protein_coding chr12:112460318 chr12:112460298 nonsynonymous SNV 0.997 0 1 hm5C_associated_SNPs_37182 0 0 1 1 112460279 112460301 mRNA hsa-miR-499-5p ERP29 miRanda miRanda
3891 chr10 17277380 17277380 1 + G T STAD 17277369 + 17277349 17277389 41 TTGCCACCTACAGGAAGCTGCTGGAAGGCGAGGAGAGCAGG TTGCCACCTACAGGAAGCTGCTGGAAGGCGATGAGAGCAGG < 41bp 1 0.70843560793336 1 0.743827521800995 experiment 0.58312878413328 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277369 chr10:17277380 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_37187 0 0 1 1 17277376 17277388 mRNA hsa-miR-539 VIM miRanda miRanda
3892 chr10 17277380 17277380 1 + G T STAD 17277386 + 17277366 17277406 41 CTGCTGGAAGGCGAGGAGAGCAGGTAGGGAACTCAGACTTG CTGCTGGAAGGCGATGAGAGCAGGTAGGGAACTCAGACTTG < 41bp 1 0.655075241129738 1 0.498897820711136 experiment 0.689849517740523 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277386 chr10:17277380 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_37188 0 0 1 1 17277376 17277388 mRNA hsa-miR-539 VIM miRanda miRanda
3893 chr4 53579473 53579473 1 + G C STAD 53579455 + 53579435 53579475 41 CCAGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTC CCAGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAACTC < 41bp 1 0.379777183521482 1 0.301655769348145 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579455 chr4:53579473 . . 0 39 hm5C_associated_SNPs_37259 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
3894 chr4 53579473 53579473 1 + G C STAD 53579455 + 53579435 53579475 41 CCAGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTC CCAGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAACTC < 41bp 1 0.379777183521482 1 0.301655769348145 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579455 chr4:53579473 . . 0 39 hm5C_associated_SNPs_37259 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
3895 chr4 53579473 53579473 1 + G C STAD 53579457 + 53579437 53579477 41 AGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTCTC AGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAACTCTC < 41bp 1 0.725335638183608 1 0.785508155822754 experiment 0.549328723632784 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579457 chr4:53579473 . . 0 37 hm5C_associated_SNPs_37260 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
3896 chr4 53579473 53579473 1 + G C STAD 53579457 + 53579437 53579477 41 AGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTCTC AGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAACTCTC < 41bp 1 0.725335638183608 1 0.785508155822754 experiment 0.549328723632784 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579457 chr4:53579473 . . 0 37 hm5C_associated_SNPs_37260 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
3897 chr4 53579473 53579473 1 + G C STAD 53579475 + 53579455 53579495 41 CACAGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGA CACAGAAGGGTAAAGTAACTCTCCATAAAACCCAGAGAAGA < 41bp 1 0.687985559422655 1 0.962897002696991 experiment 0.62402888115469 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579475 chr4:53579473 . . 0 19 hm5C_associated_SNPs_37261 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
3898 chr4 53579473 53579473 1 + G C STAD 53579475 + 53579455 53579495 41 CACAGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGA CACAGAAGGGTAAAGTAACTCTCCATAAAACCCAGAGAAGA < 41bp 1 0.687985559422655 1 0.962897002696991 experiment 0.62402888115469 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579475 chr4:53579473 . . 0 19 hm5C_associated_SNPs_37261 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
3899 chr4 53579473 53579473 1 + G C STAD 53579477 + 53579457 53579497 41 CAGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGA CAGAAGGGTAAAGTAACTCTCCATAAAACCCAGAGAAGAGA < 41bp 1 0.145570586005972 1 0.152870982885361 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579477 chr4:53579473 . . 0 17 hm5C_associated_SNPs_37262 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
3900 chr4 53579473 53579473 1 + G C STAD 53579477 + 53579457 53579497 41 CAGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGA CAGAAGGGTAAAGTAACTCTCCATAAAACCCAGAGAAGAGA < 41bp 1 0.145570586005972 1 0.152870982885361 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579477 chr4:53579473 . . 0 17 hm5C_associated_SNPs_37262 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
3901 chr4 53579473 53579473 1 + G C STAD 53579478 + 53579458 53579498 41 AGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGAC AGAAGGGTAAAGTAACTCTCCATAAAACCCAGAGAAGAGAC < 41bp 1 0.274528943030709 1 0.20136097073555 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579478 chr4:53579473 . . 0 16 hm5C_associated_SNPs_37263 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
3902 chr4 53579473 53579473 1 + G C STAD 53579478 + 53579458 53579498 41 AGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGAC AGAAGGGTAAAGTAACTCTCCATAAAACCCAGAGAAGAGAC < 41bp 1 0.274528943030709 1 0.20136097073555 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579478 chr4:53579473 . . 0 16 hm5C_associated_SNPs_37263 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
3903 chr4 53579473 53579473 1 + G C STAD 53579485 + 53579465 53579505 41 TAAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAG TAAAGTAACTCTCCATAAAACCCAGAGAAGAGACTGGAAAG < 41bp 1 0.290117636397595 1 0.13501387834549 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579485 chr4:53579473 . . 0 9 hm5C_associated_SNPs_37264 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
3904 chr4 53579473 53579473 1 + G C STAD 53579485 + 53579465 53579505 41 TAAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAG TAAAGTAACTCTCCATAAAACCCAGAGAAGAGACTGGAAAG < 41bp 1 0.290117636397595 1 0.13501387834549 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579485 chr4:53579473 . . 0 9 hm5C_associated_SNPs_37264 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
3905 chr4 53579473 53579473 1 + G C STAD 53579486 + 53579466 53579506 41 AAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGC AAAGTAACTCTCCATAAAACCCAGAGAAGAGACTGGAAAGC < 41bp 1 0.470901960180106 1 0.2088742852211 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579486 chr4:53579473 . . 0 8 hm5C_associated_SNPs_37265 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
3906 chr4 53579473 53579473 1 + G C STAD 53579486 + 53579466 53579506 41 AAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGC AAAGTAACTCTCCATAAAACCCAGAGAAGAGACTGGAAAGC < 41bp 1 0.470901960180106 1 0.2088742852211 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579486 chr4:53579473 . . 0 8 hm5C_associated_SNPs_37265 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
3907 chr4 53579473 53579473 1 + G C STAD 53579487 + 53579467 53579507 41 AAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGCT AAGTAACTCTCCATAAAACCCAGAGAAGAGACTGGAAAGCT < 41bp 1 0.375152705981519 1 0.461212545633316 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579487 chr4:53579473 . . 0 7 hm5C_associated_SNPs_37266 0 0 1 2 53579467 53579492 mRNA hsa-miR-330-5p SNORA26 miRanda miRanda
3908 chr4 53579473 53579473 1 + G C STAD 53579487 + 53579467 53579507 41 AAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGCT AAGTAACTCTCCATAAAACCCAGAGAAGAGACTGGAAAGCT < 41bp 1 0.375152705981519 1 0.461212545633316 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579487 chr4:53579473 . . 0 7 hm5C_associated_SNPs_37266 0 0 1 2 53579473 53579492 mRNA hsa-miR-326 SNORA26 miRanda miRanda
3909 chr2 241533993 241533993 1 + A G STAD 241533998 + 241533978 241534018 41 GGTAGATGCAGCGGTAGCATCTGAGCTCCTGTCCCAGCTCC GGTAGATGCAGCGGTGGCATCTGAGCTCCTGTCCCAGCTCC < 41bp 1 0.79394465975364 1 0.820061564445496 experiment 0.41211068049272 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241533998 chr2:241533993 synonymous SNV . 0 16 hm5C_associated_SNPs_37273 0 0 1 1 241533990 241534012 mRNA hsa-miR-184 CAPN10 miRanda miRanda
3910 chr2 184023068 184023068 1 + A T STAD 184023063 + 184023043 184023083 41 TTATCAATCTAAACTGCAGGCTCGGAAAGCCTTAAGCAAAG TTATCAATCTAAACTGCAGGCTCGGTAAGCCTTAAGCAAAG < 41bp 1 0.72397466823575 1 0.288871109485626 experiment 0.552050663528501 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP35 ENSG00000163002 CDS Human protein_coding chr2:184023063 chr2:184023068 stopgain 0.998 1 26 hm5C_associated_SNPs_37303 0 0 1 1 184023046 184023068 mRNA hsa-miR-615-3p NUP35 miRanda miRanda
3911 chr17 55191844 55191844 1 + G A STAD 55191830 + 55191810 55191850 41 CCCTCTACAGCTCATGCTGCCTGATGGCATCACCGTGGAGG CCCTCTACAGCTCATGCTGCCTGATGGCATCACCATGGAGG < 41bp 1 0.23091773814871 1 0.121356278657913 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55191830 chr17:55191844 nonsynonymous SNV 0.995 4 35 hm5C_associated_SNPs_37331 0 0 1 1 55191824 55191847 mRNA hsa-miR-125a-3p AKAP1 miRanda miRanda
3912 chr13 49771028 49771028 1 + G A STAD 49771026 + 49771006 49771046 41 TTTCTAGTTTGGACCATTTTCAGAAAAATGTGATATTACTA TTTCTAGTTTGGACCATTTTCAAAAAAATGTGATATTACTA < 41bp 1 0.546018574949778 1 0.82906711101532 experiment 0.907962850100443 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49771026 chr13:49771028 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_37460 0 0 0 2 49771018 49771039 mRNA hsa-miR-23a FNDC3A miRanda miRanda
3913 chr13 49771028 49771028 1 + G A STAD 49771026 + 49771006 49771046 41 TTTCTAGTTTGGACCATTTTCAGAAAAATGTGATATTACTA TTTCTAGTTTGGACCATTTTCAAAAAAATGTGATATTACTA < 41bp 1 0.546018574949778 1 0.82906711101532 experiment 0.907962850100443 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49771026 chr13:49771028 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_37460 0 0 0 2 49771018 49771039 mRNA hsa-miR-23b FNDC3A miRanda miRanda
3914 chr11 12281433 12281433 1 + G A STAD 12281442 + 12281422 12281462 41 CACCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT CACCCTGGAAGACAGCCCCCCAGGTATCTCCACCTCCTTCT < 41bp 1 0.564615743546974 1 0.134138166904449 experiment 0.870768512906052 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281442 chr11:12281433 nonsynonymous SNV 0.973 0 12 hm5C_associated_SNPs_37541 0 0 1 1 12281433 12281444 mRNA hsa-miR-203 MICAL2 miRanda miRanda
3915 chr11 86017511 86017511 1 + A G STAD 86017502 + 86017482 86017522 41 GGGAAGCCAAGTGCCATCTTCAAAATTTCAGGTCTTAAATC GGGAAGCCAAGTGCCATCTTCAAAATTTCGGGTCTTAAATC < 41bp 1 0.608189702622391 1 0.509992957115173 experiment 0.783620594755218 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HIKESHI ENSG00000149196 CDS Human protein_coding chr11:86017502 chr11:86017511 synonymous SNV . 0 30 hm5C_associated_SNPs_37561 0 0 0 3 86017498 86017519 mRNA hsa-miR-208a C11orf73 miRanda miRanda
3916 chr11 86017511 86017511 1 + A G STAD 86017502 + 86017482 86017522 41 GGGAAGCCAAGTGCCATCTTCAAAATTTCAGGTCTTAAATC GGGAAGCCAAGTGCCATCTTCAAAATTTCGGGTCTTAAATC < 41bp 1 0.608189702622391 1 0.509992957115173 experiment 0.783620594755218 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HIKESHI ENSG00000149196 CDS Human protein_coding chr11:86017502 chr11:86017511 synonymous SNV . 0 30 hm5C_associated_SNPs_37561 0 0 0 3 86017499 86017519 mRNA hsa-miR-499-5p C11orf73 miRanda miRanda
3917 chr11 86017511 86017511 1 + A G STAD 86017502 + 86017482 86017522 41 GGGAAGCCAAGTGCCATCTTCAAAATTTCAGGTCTTAAATC GGGAAGCCAAGTGCCATCTTCAAAATTTCGGGTCTTAAATC < 41bp 1 0.608189702622391 1 0.509992957115173 experiment 0.783620594755218 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HIKESHI ENSG00000149196 CDS Human protein_coding chr11:86017502 chr11:86017511 synonymous SNV . 0 30 hm5C_associated_SNPs_37561 0 0 0 3 86017498 86017519 mRNA hsa-miR-208b C11orf73 miRanda miRanda
3918 chr19 804843 804843 1 + C T STAD 804834 + 804814 804854 41 GCCCGGGACCTGCAGATTTTCTCCAAGTTCGGCACAGTGTT GCCCGGGACCTGCAGATTTTCTCCAAGTTTGGCACAGTGTT < 41bp 1 0.798037177864039 1 0.939312696456909 experiment 0.403925644271923 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804834 chr19:804843 synonymous SNV . 0 30 hm5C_associated_SNPs_37608 0 0 1 2 804833 804855 mRNA hsa-miR-141 PTBP1 miRanda miRanda
3919 chr19 804843 804843 1 + C T STAD 804834 + 804814 804854 41 GCCCGGGACCTGCAGATTTTCTCCAAGTTCGGCACAGTGTT GCCCGGGACCTGCAGATTTTCTCCAAGTTTGGCACAGTGTT < 41bp 1 0.798037177864039 1 0.939312696456909 experiment 0.403925644271923 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804834 chr19:804843 synonymous SNV . 0 30 hm5C_associated_SNPs_37608 0 0 1 2 804835 804855 mRNA hsa-miR-200a PTBP1 miRanda miRanda
3920 chrX 48759706 48759706 1 + C T STAD 48759703 + 48759683 48759723 41 GACAGGGAACGGGATCGGGACCGCGGGTATGACAAGGCAGA GACAGGGAACGGGATCGGGACCGTGGGTATGACAAGGCAGA < 41bp 1 0.288748971675202 1 0.0604234337806702 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759703 chrX:48759706 synonymous SNV . 0 24 hm5C_associated_SNPs_37616 1 0 1 1 48759701 48759725 mRNA hsa-miR-346 PQBP1 miRanda miRanda
3921 chrX 48759706 48759706 1 + C T STAD 48759704 + 48759684 48759724 41 ACAGGGAACGGGATCGGGACCGCGGGTATGACAAGGCAGAC ACAGGGAACGGGATCGGGACCGTGGGTATGACAAGGCAGAC < 41bp 1 0.768180313319993 1 0.527259349822998 experiment 0.463639373360014 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759704 chrX:48759706 synonymous SNV . 0 23 hm5C_associated_SNPs_37617 1 0 1 1 48759701 48759725 mRNA hsa-miR-346 PQBP1 miRanda miRanda
3922 chrX 48759706 48759706 1 + C T STAD 48759720 + 48759700 48759740 41 GGACCGCGGGTATGACAAGGCAGACCGGGAAGAGGGCAAAG GGACCGTGGGTATGACAAGGCAGACCGGGAAGAGGGCAAAG < 41bp 1 0.589656423865928 1 0.139460146427155 experiment 0.820687152268145 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759720 chrX:48759706 synonymous SNV . 0 7 hm5C_associated_SNPs_37618 1 0 1 1 48759701 48759725 mRNA hsa-miR-346 PQBP1 miRanda miRanda
3923 chr6 32123549 32123549 1 + G A STAD 32123537 + 32123517 32123557 41 TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTATG TTCTTTCATCTCCCTCTCCTCTCCACAGATGGAACAGTATG < 41bp 1 0.649250969325992 1 0.95546692609787 experiment 0.701498061348016 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control PPT2 ENSG00000221988;ENSG00000258388 CDS Human other chr6:32123537 chr6:32123549 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_37666 0 0 1 1 32123544 32123560 mRNA hsa-miR-187 PPT2 miRanda miRanda
3924 chr22 32275660 32275660 1 + C T STAD 32275664 + 32275644 32275684 41 GCCCTGGCTGCCTAGCCGGCCAGCCTCCTATGCAAGTAGGC GCCCTGGCTGCCTAGCTGGCCAGCCTCCTATGCAAGTAGGC < 41bp 1 0.306277543254424 1 0.0641768276691437 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32275664 chr22:32275660 nonsynonymous SNV 0.980 3 17 hm5C_associated_SNPs_37689 0 0 0 2 32275658 32275681 mRNA hsa-miR-217 DEPDC5 miRanda miRanda
3925 chr22 32275660 32275660 1 + C T STAD 32275664 + 32275644 32275684 41 GCCCTGGCTGCCTAGCCGGCCAGCCTCCTATGCAAGTAGGC GCCCTGGCTGCCTAGCTGGCCAGCCTCCTATGCAAGTAGGC < 41bp 1 0.306277543254424 1 0.0641768276691437 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32275664 chr22:32275660 nonsynonymous SNV 0.980 3 17 hm5C_associated_SNPs_37689 0 0 0 2 32275657 32275678 mRNA hsa-miR-153 DEPDC5 miRanda miRanda
3926 chr19 54711410 54711410 1 + G T STAD 54711401 + 54711381 54711421 41 AGGAAGAATGCCAAGAAGGGCCAGGGTGGGGCTGGGGCTGG AGGAAGAATGCCAAGAAGGGCCAGGGTGGTGCTGGGGCTGG < 41bp 1 0.772214747904346 1 0.426272034645081 experiment 0.455570504191309 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS9 ENSG00000170889 CDS Human protein_coding chr19:54711401 chr19:54711410 synonymous SNV . 0 30 hm5C_associated_SNPs_37719 0 0 1 1 54711408 54711430 mRNA hsa-miR-187 RPS9 miRanda miRanda
3927 chrX 73047073 73047073 1 - G A STAD 73047076 - 73047056 73047096 41 CCTGCCTGATAGGTGCAGAACGTCGGCTATCAGAGCAAGCA CCTGCCTGATAGGTGCAGAACGTTGGCTATCAGAGCAAGCA < 41bp 1 0.143249383314775 1 0.0770623683929443 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047076 chrX:73047073 . . 0 24 hm5C_associated_SNPs_37767 0 0 1 2 73047059 73047080 lncRNA hsa-miR-5691 XIST miRanda starBase2
3928 chrX 73047073 73047073 1 - G A STAD 73047076 - 73047056 73047096 41 CCTGCCTGATAGGTGCAGAACGTCGGCTATCAGAGCAAGCA CCTGCCTGATAGGTGCAGAACGTTGGCTATCAGAGCAAGCA < 41bp 1 0.143249383314775 1 0.0770623683929443 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047076 chrX:73047073 . . 0 24 hm5C_associated_SNPs_37767 0 0 1 2 73047059 73047081 lncRNA hsa-miR-6805-3p XIST miRanda starBase2
3929 chr8 144332292 144332292 1 + G A STAD 144332280 + 144332260 144332300 41 AGGAAGAAACCCTATGAGTGCAGTGAGTGTGGGCGGATCTT AGGAAGAAACCCTATGAGTGCAGTGAGTGTGGACGGATCTT < 41bp 1 0.217480754994503 1 0.227294862270355 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP41 ENSG00000181638;ENSG00000264668 CDS Human other chr8:144332280 chr8:144332292 synonymous SNV . 0 33 hm5C_associated_SNPs_37777 0 0 1 1 144332286 144332309 mRNA hsa-miR-218 ZFP41 miRanda miRanda
3930 chr8 28906535 28906535 1 + T C STAD 28906521 + 28906501 28906541 41 ATGTGCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTC ATGTGCAGAGTCCAGGAGGCCACTCAAACAGTGACGATGTC < 41bp 1 0.162391650747259 1 0.0698150396347046 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906521 chr8:28906535 synonymous SNV . 0 35 hm5C_associated_SNPs_37785 0 0 1 1 28906518 28906541 mRNA hsa-miR-181d HMBOX1 miRanda miRanda
3931 chr8 28906535 28906535 1 + T C STAD 28906525 + 28906505 28906545 41 GCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACG GCAGAGTCCAGGAGGCCACTCAAACAGTGACGATGTCGACG < 41bp 1 0.301478409318869 1 0.195876657962799 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906525 chr8:28906535 synonymous SNV . 0 31 hm5C_associated_SNPs_37786 0 0 1 1 28906518 28906541 mRNA hsa-miR-181d HMBOX1 miRanda miRanda
3932 chr8 28906535 28906535 1 + T C STAD 28906529 + 28906509 28906549 41 AGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACGGGAA AGTCCAGGAGGCCACTCAAACAGTGACGATGTCGACGGGAA < 41bp 1 0.695335860425846 1 0.553985714912415 experiment 0.609328279148307 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906529 chr8:28906535 synonymous SNV . 0 27 hm5C_associated_SNPs_37787 0 0 1 1 28906518 28906541 mRNA hsa-miR-181d HMBOX1 miRanda miRanda
3933 chr8 28906535 28906535 1 + T C STAD 28906541 + 28906521 28906561 41 CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGA CACTCAAACAGTGACGATGTCGACGGGAATGACTACTCTGA < 41bp 1 0.762079870350823 1 0.3194460272789 experiment 0.475840259298355 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906541 chr8:28906535 synonymous SNV . 0 15 hm5C_associated_SNPs_37788 0 0 1 1 28906518 28906541 mRNA hsa-miR-181d HMBOX1 miRanda miRanda
3934 chr8 28906535 28906535 1 + T C STAD 28906553 + 28906533 28906573 41 GATGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC GACGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC < 41bp 1 0.640590449828104 1 0.323295056819916 experiment 0.718819100343792 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906553 chr8:28906535 synonymous SNV . 0 3 hm5C_associated_SNPs_37789 0 0 1 1 28906518 28906541 mRNA hsa-miR-181d HMBOX1 miRanda miRanda
3935 chr1 109642959 109642959 1 + C T STAD 109642947 + 109642927 109642967 41 CGCGCTTGGAGCGTGTTAGGCGAGTGCGTGCGCCCACCCCT CGCGCTTGGAGCGTGTTAGGCGAGTGCGTGCGTCCACCCCT < 41bp 1 0.778287714595066 1 0.685521125793457 experiment 0.443424570809869 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642947 chr1:109642959 . . 0 33 hm5C_associated_SNPs_37867 0 0 1 4 109642955 109642977 lncRNA hsa-miR-3184-5p AL356488.2 miRanda starBase2
3936 chr1 109642959 109642959 1 + C T STAD 109642947 + 109642927 109642967 41 CGCGCTTGGAGCGTGTTAGGCGAGTGCGTGCGCCCACCCCT CGCGCTTGGAGCGTGTTAGGCGAGTGCGTGCGTCCACCCCT < 41bp 1 0.778287714595066 1 0.685521125793457 experiment 0.443424570809869 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642947 chr1:109642959 . . 0 33 hm5C_associated_SNPs_37867 0 0 1 4 109642955 109642977 lncRNA hsa-miR-423-5p AL356488.2 miRanda starBase2
3937 chr1 109642959 109642959 1 + C T STAD 109642947 + 109642927 109642967 41 CGCGCTTGGAGCGTGTTAGGCGAGTGCGTGCGCCCACCCCT CGCGCTTGGAGCGTGTTAGGCGAGTGCGTGCGTCCACCCCT < 41bp 1 0.778287714595066 1 0.685521125793457 experiment 0.443424570809869 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642947 chr1:109642959 . . 0 33 hm5C_associated_SNPs_37867 0 0 1 4 109642943 109642965 lncRNA hsa-miR-541-3p AL356488.2 miRanda starBase2
3938 chr1 109642959 109642959 1 + C T STAD 109642947 + 109642927 109642967 41 CGCGCTTGGAGCGTGTTAGGCGAGTGCGTGCGCCCACCCCT CGCGCTTGGAGCGTGTTAGGCGAGTGCGTGCGTCCACCCCT < 41bp 1 0.778287714595066 1 0.685521125793457 experiment 0.443424570809869 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642947 chr1:109642959 . . 0 33 hm5C_associated_SNPs_37867 0 0 1 4 109642944 109642965 lncRNA hsa-miR-654-5p AL356488.2 miRanda starBase2
3939 chr1 109642959 109642959 1 + C T STAD 109642953 + 109642933 109642973 41 TGGAGCGTGTTAGGCGAGTGCGTGCGCCCACCCCTGCGCCC TGGAGCGTGTTAGGCGAGTGCGTGCGTCCACCCCTGCGCCC < 41bp 1 0.655844649071367 1 0.664149522781372 experiment 0.688310701857265 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642953 chr1:109642959 . . 0 27 hm5C_associated_SNPs_37868 0 0 1 4 109642955 109642977 lncRNA hsa-miR-3184-5p AL356488.2 miRanda starBase2
3940 chr1 109642959 109642959 1 + C T STAD 109642953 + 109642933 109642973 41 TGGAGCGTGTTAGGCGAGTGCGTGCGCCCACCCCTGCGCCC TGGAGCGTGTTAGGCGAGTGCGTGCGTCCACCCCTGCGCCC < 41bp 1 0.655844649071367 1 0.664149522781372 experiment 0.688310701857265 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642953 chr1:109642959 . . 0 27 hm5C_associated_SNPs_37868 0 0 1 4 109642955 109642977 lncRNA hsa-miR-423-5p AL356488.2 miRanda starBase2
3941 chr1 109642959 109642959 1 + C T STAD 109642953 + 109642933 109642973 41 TGGAGCGTGTTAGGCGAGTGCGTGCGCCCACCCCTGCGCCC TGGAGCGTGTTAGGCGAGTGCGTGCGTCCACCCCTGCGCCC < 41bp 1 0.655844649071367 1 0.664149522781372 experiment 0.688310701857265 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642953 chr1:109642959 . . 0 27 hm5C_associated_SNPs_37868 0 0 1 4 109642943 109642965 lncRNA hsa-miR-541-3p AL356488.2 miRanda starBase2
3942 chr1 109642959 109642959 1 + C T STAD 109642953 + 109642933 109642973 41 TGGAGCGTGTTAGGCGAGTGCGTGCGCCCACCCCTGCGCCC TGGAGCGTGTTAGGCGAGTGCGTGCGTCCACCCCTGCGCCC < 41bp 1 0.655844649071367 1 0.664149522781372 experiment 0.688310701857265 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642953 chr1:109642959 . . 0 27 hm5C_associated_SNPs_37868 0 0 1 4 109642944 109642965 lncRNA hsa-miR-654-5p AL356488.2 miRanda starBase2
3943 chr1 109642959 109642959 1 + C T STAD 109642957 + 109642937 109642977 41 GCGTGTTAGGCGAGTGCGTGCGCCCACCCCTGCGCCCCTCC GCGTGTTAGGCGAGTGCGTGCGTCCACCCCTGCGCCCCTCC < 41bp 1 0.275468413181548 1 0.598453879356384 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642957 chr1:109642959 . . 0 23 hm5C_associated_SNPs_37869 0 0 1 4 109642955 109642977 lncRNA hsa-miR-3184-5p AL356488.2 miRanda starBase2
3944 chr1 109642959 109642959 1 + C T STAD 109642957 + 109642937 109642977 41 GCGTGTTAGGCGAGTGCGTGCGCCCACCCCTGCGCCCCTCC GCGTGTTAGGCGAGTGCGTGCGTCCACCCCTGCGCCCCTCC < 41bp 1 0.275468413181548 1 0.598453879356384 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642957 chr1:109642959 . . 0 23 hm5C_associated_SNPs_37869 0 0 1 4 109642955 109642977 lncRNA hsa-miR-423-5p AL356488.2 miRanda starBase2
3945 chr1 109642959 109642959 1 + C T STAD 109642957 + 109642937 109642977 41 GCGTGTTAGGCGAGTGCGTGCGCCCACCCCTGCGCCCCTCC GCGTGTTAGGCGAGTGCGTGCGTCCACCCCTGCGCCCCTCC < 41bp 1 0.275468413181548 1 0.598453879356384 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642957 chr1:109642959 . . 0 23 hm5C_associated_SNPs_37869 0 0 1 4 109642943 109642965 lncRNA hsa-miR-541-3p AL356488.2 miRanda starBase2
3946 chr1 109642959 109642959 1 + C T STAD 109642957 + 109642937 109642977 41 GCGTGTTAGGCGAGTGCGTGCGCCCACCCCTGCGCCCCTCC GCGTGTTAGGCGAGTGCGTGCGTCCACCCCTGCGCCCCTCC < 41bp 1 0.275468413181548 1 0.598453879356384 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642957 chr1:109642959 . . 0 23 hm5C_associated_SNPs_37869 0 0 1 4 109642944 109642965 lncRNA hsa-miR-654-5p AL356488.2 miRanda starBase2
3947 chr1 109642959 109642959 1 + C T STAD 109642965 + 109642945 109642985 41 GGCGAGTGCGTGCGCCCACCCCTGCGCCCCTCCTCCCGCTT GGCGAGTGCGTGCGTCCACCCCTGCGCCCCTCCTCCCGCTT < 41bp 1 0.175207877797721 1 0.198391199111938 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642965 chr1:109642959 . . 0 15 hm5C_associated_SNPs_37870 0 0 1 4 109642955 109642977 lncRNA hsa-miR-3184-5p AL356488.2 miRanda starBase2
3948 chr1 109642959 109642959 1 + C T STAD 109642965 + 109642945 109642985 41 GGCGAGTGCGTGCGCCCACCCCTGCGCCCCTCCTCCCGCTT GGCGAGTGCGTGCGTCCACCCCTGCGCCCCTCCTCCCGCTT < 41bp 1 0.175207877797721 1 0.198391199111938 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642965 chr1:109642959 . . 0 15 hm5C_associated_SNPs_37870 0 0 1 4 109642955 109642977 lncRNA hsa-miR-423-5p AL356488.2 miRanda starBase2
3949 chr1 109642959 109642959 1 + C T STAD 109642965 + 109642945 109642985 41 GGCGAGTGCGTGCGCCCACCCCTGCGCCCCTCCTCCCGCTT GGCGAGTGCGTGCGTCCACCCCTGCGCCCCTCCTCCCGCTT < 41bp 1 0.175207877797721 1 0.198391199111938 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642965 chr1:109642959 . . 0 15 hm5C_associated_SNPs_37870 0 0 1 4 109642943 109642965 lncRNA hsa-miR-541-3p AL356488.2 miRanda starBase2
3950 chr1 109642959 109642959 1 + C T STAD 109642965 + 109642945 109642985 41 GGCGAGTGCGTGCGCCCACCCCTGCGCCCCTCCTCCCGCTT GGCGAGTGCGTGCGTCCACCCCTGCGCCCCTCCTCCCGCTT < 41bp 1 0.175207877797721 1 0.198391199111938 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642965 chr1:109642959 . . 0 15 hm5C_associated_SNPs_37870 0 0 1 4 109642944 109642965 lncRNA hsa-miR-654-5p AL356488.2 miRanda starBase2
3951 chr1 109642959 109642959 1 + C T STAD 109642969 + 109642949 109642989 41 AGTGCGTGCGCCCACCCCTGCGCCCCTCCTCCCGCTTACAC AGTGCGTGCGTCCACCCCTGCGCCCCTCCTCCCGCTTACAC < 41bp 1 0.283690259734075 1 0.106959342956543 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642969 chr1:109642959 . . 0 11 hm5C_associated_SNPs_37871 0 0 1 4 109642955 109642977 lncRNA hsa-miR-3184-5p AL356488.2 miRanda starBase2
3952 chr1 109642959 109642959 1 + C T STAD 109642969 + 109642949 109642989 41 AGTGCGTGCGCCCACCCCTGCGCCCCTCCTCCCGCTTACAC AGTGCGTGCGTCCACCCCTGCGCCCCTCCTCCCGCTTACAC < 41bp 1 0.283690259734075 1 0.106959342956543 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642969 chr1:109642959 . . 0 11 hm5C_associated_SNPs_37871 0 0 1 4 109642955 109642977 lncRNA hsa-miR-423-5p AL356488.2 miRanda starBase2
3953 chr1 109642959 109642959 1 + C T STAD 109642969 + 109642949 109642989 41 AGTGCGTGCGCCCACCCCTGCGCCCCTCCTCCCGCTTACAC AGTGCGTGCGTCCACCCCTGCGCCCCTCCTCCCGCTTACAC < 41bp 1 0.283690259734075 1 0.106959342956543 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642969 chr1:109642959 . . 0 11 hm5C_associated_SNPs_37871 0 0 1 4 109642943 109642965 lncRNA hsa-miR-541-3p AL356488.2 miRanda starBase2
3954 chr1 109642959 109642959 1 + C T STAD 109642969 + 109642949 109642989 41 AGTGCGTGCGCCCACCCCTGCGCCCCTCCTCCCGCTTACAC AGTGCGTGCGTCCACCCCTGCGCCCCTCCTCCCGCTTACAC < 41bp 1 0.283690259734075 1 0.106959342956543 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642969 chr1:109642959 . . 0 11 hm5C_associated_SNPs_37871 0 0 1 4 109642944 109642965 lncRNA hsa-miR-654-5p AL356488.2 miRanda starBase2
3955 chr11 831623 831623 1 + C T STAD 831625 + 831605 831645 41 AAGGCTCTGACAACAGCCCGCCTGCCTGGGCCCACCTGCTG AAGGCTCTGACAACAGCCTGCCTGCCTGGGCCCACCTGCTG < 41bp 1 0.0975338776469112 1 0.0420100092887878 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:831625 chr11:831623 nonsynonymous SNV 0.002 1 19 hm5C_associated_SNPs_37937 0 0 1 1 831621 831646 mRNA hsa-miR-214 EFCAB4A miRanda miRanda
3956 chr7 23235463 23235463 1 + A G STAD 23235473 + 23235453 23235493 41 TTCAGGTTTTACAGACATTTCACCAGAGGAATTGAGGCTTG TTCAGGTTTTGCAGACATTTCACCAGAGGAATTGAGGCTTG < 41bp 1 0.753295910868662 1 0.580677270889282 experiment 0.493408178262676 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23235473 chr7:23235463 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_37972 0 0 1 1 23235458 23235475 mRNA hsa-miR-203 NUPL2 miRanda miRanda
3957 chr19 50906824 50906824 1 + G A STAD 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CATACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.0702555718313528 1 0.229276388883591 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906824 synonymous SNV . 0 2 hm5C_associated_SNPs_37989 2 0 1 1 50906808 50906831 mRNA hsa-miR-98 POLD1 miRanda miRanda
3958 chr9 37770016 37770016 1 + G A STAD 37770013 + 37769993 37770033 41 ACCTGACTCCTGACTCAGAACACGGTATGTAGTTGAATGCA ACCTGACTCCTGACTCAGAACACAGTATGTAGTTGAATGCA < 41bp 1 0.492623681749148 1 0.309346258640289 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37770013 chr9:37770016 nonsynonymous SNV 0.845 1 24 hm5C_associated_SNPs_38020 0 0 1 1 37770001 37770016 mRNA hsa-miR-335 RG9MTD3 miRanda miRanda
3959 chr19 1272159 1272159 1 + G A STAD 1272179 + 1272159 1272199 41 GTGCTTGCCCAGAAGAGGCGCATCTGTCCTCTCAGAGCCAT ATGCTTGCCCAGAAGAGGCGCATCTGTCCTCTCAGAGCCAT < 41bp 1 0.110678438056324 1 0.0811865031719208 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272179 chr19:1272159 nonsynonymous SNV 0.272 1 1 hm5C_associated_SNPs_38028 0 0 1 1 1272148 1272168 mRNA hsa-miR-31 CIRBP miRanda miRanda
3960 chr5 70939714 70939714 1 + G A STAD 70939706 + 70939686 70939726 41 AAACAACGGAGTTCTCTTTTCTGAATCTGCAAAAAAGGCAA AAACAACGGAGTTCTCTTTTCTGAATCTACAAAAAAGGCAA < 41bp 1 0.691854590180354 1 0.725523769855499 experiment 0.616290819639292 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCCC2 ENSG00000131844 CDS Human protein_coding chr5:70939706 chr5:70939714 nonsynonymous SNV 0.996 5 29 hm5C_associated_SNPs_38037 0 0 0 1 70939701 70939721 mRNA hsa-miR-129-5p MCCC2 miRanda miRanda
3961 chr12 107237716 107237716 1 + C T STAD 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTTAAAGA < 41bp 1 0.125862435158548 1 0.283031851053238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237716 synonymous SNV . 0 36 hm5C_associated_SNPs_38135 0 0 0 1 107237698 107237717 mRNA hsa-miR-539 RIC8B miRanda miRanda
3962 chr5 110439999 110439999 1 + T G STAD 110439992 + 110439972 110440012 41 ACTCTACAGCAATTGCCGGACTGACATTTCTCCATAGAGAG ACTCTACAGCAATTGCCGGACTGACATGTCTCCATAGAGAG < 41bp 1 0.325191192523085 1 0.0948715209960938 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR36 ENSG00000134987 CDS Human protein_coding chr5:110439992 chr5:110439999 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_38223 0 0 1 1 110439995 110440019 mRNA hsa-miR-302d WDR36 miRanda miRanda
3963 chrX 73046663 73046663 1 - G A STAD 73046662 - 73046642 73046682 41 CCAACGACCTAAGATTAGCCCAGGGTTGTAGCTGGAAGACC CCAACGACCTAAGATTAGCTCAGGGTTGTAGCTGGAAGACC < 41bp 1 0.642757531719362 1 0.636115729808807 experiment 0.714484936561276 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046662 chrX:73046663 . . 0 20 hm5C_associated_SNPs_38232 0 0 1 1 73046659 73046678 lncRNA hsa-miR-378g XIST miRanda starBase2
3964 chrX 73046663 73046663 1 - G A STAD 73046674 - 73046654 73046694 41 TGTGACACAAGGCCAACGACCTAAGATTAGCCCAGGGTTGT TGTGACACAAGGCCAACGACCTAAGATTAGCTCAGGGTTGT < 41bp 1 0.277864415293834 1 0.30571836233139 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046674 chrX:73046663 . . 0 32 hm5C_associated_SNPs_38233 0 0 1 1 73046659 73046678 lncRNA hsa-miR-378g XIST miRanda starBase2
3965 chrX 73046663 73046663 1 - G A STAD 73046678 - 73046658 73046698 41 GACTTGTGACACAAGGCCAACGACCTAAGATTAGCCCAGGG GACTTGTGACACAAGGCCAACGACCTAAGATTAGCTCAGGG < 41bp 1 0.126198976078271 1 0.424855291843414 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046678 chrX:73046663 . . 0 36 hm5C_associated_SNPs_38234 0 0 1 1 73046659 73046678 lncRNA hsa-miR-378g XIST miRanda starBase2
3966 chr8 144332286 144332286 1 + G A STAD 144332280 + 144332260 144332300 41 AGGAAGAAACCCTATGAGTGCAGTGAGTGTGGGCGGATCTT AGGAAGAAACCCTATGAGTGCAGTGAATGTGGGCGGATCTT < 41bp 1 0.223880391031425 1 0.337524890899658 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP41 ENSG00000181638;ENSG00000264668 CDS Human other chr8:144332280 chr8:144332286 synonymous SNV . 0 27 hm5C_associated_SNPs_38247 0 0 1 1 144332286 144332309 mRNA hsa-miR-218 ZFP41 miRanda miRanda
3967 chr1 109643110 109643110 1 + C T STAD 109643093 + 109643073 109643113 41 GGGGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCACGCT GGGGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCATGCT < 41bp 1 0.135270555540711 1 0.034042626619339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643093 chr1:109643110 . . 0 38 hm5C_associated_SNPs_38256 0 0 1 1 109643099 109643119 lncRNA hsa-miR-140-3p AL356488.2 miRanda starBase2
3968 chr1 109643110 109643110 1 + C T STAD 109643095 + 109643075 109643115 41 GGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCACGCTGT GGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCATGCTGT < 41bp 1 0.657000784358486 1 0.198974132537842 experiment 0.685998431283027 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643095 chr1:109643110 . . 0 36 hm5C_associated_SNPs_38257 0 0 1 1 109643099 109643119 lncRNA hsa-miR-140-3p AL356488.2 miRanda starBase2
3969 chr1 109643110 109643110 1 + C T STAD 109643104 + 109643084 109643124 41 CAGCGAGGCCCCTTAGGCGGCGGCCACGCTGTGGTCCCCGA CAGCGAGGCCCCTTAGGCGGCGGCCATGCTGTGGTCCCCGA < 41bp 1 0.751661694106311 1 0.602910876274109 experiment 0.496676611787379 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643104 chr1:109643110 . . 0 27 hm5C_associated_SNPs_38258 0 0 1 1 109643099 109643119 lncRNA hsa-miR-140-3p AL356488.2 miRanda starBase2
3970 chr1 109643110 109643110 1 + C T STAD 109643108 + 109643088 109643128 41 GAGGCCCCTTAGGCGGCGGCCACGCTGTGGTCCCCGAGGTC GAGGCCCCTTAGGCGGCGGCCATGCTGTGGTCCCCGAGGTC < 41bp 1 0.438632979644163 1 0.39786097407341 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643108 chr1:109643110 . . 0 23 hm5C_associated_SNPs_38259 0 0 1 1 109643099 109643119 lncRNA hsa-miR-140-3p AL356488.2 miRanda starBase2
3971 chr1 109643110 109643110 1 + C T STAD 109643120 + 109643100 109643140 41 GCGGCGGCCACGCTGTGGTCCCCGAGGTCCCGGAGCTGGCC GCGGCGGCCATGCTGTGGTCCCCGAGGTCCCGGAGCTGGCC < 41bp 1 0.716892774299093 1 0.41826120018959 experiment 0.566214451401813 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643120 chr1:109643110 . . 0 11 hm5C_associated_SNPs_38260 0 0 1 1 109643099 109643119 lncRNA hsa-miR-140-3p AL356488.2 miRanda starBase2
3972 chr5 37697794 37697794 1 + C T STAD 37697804 + 37697784 37697824 41 GCTCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTC GCTCATGACTTGGGCACAGACACTTCTTGCGTGACTTTTTC < 41bp 1 0.395965824740517 1 0.0327509045600891 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697804 chr5:37697794 nonsynonymous SNV 0.990 0 11 hm5C_associated_SNPs_38309 0 0 0 2 37697782 37697809 mRNA hsa-miR-372 WDR70 miRanda miRanda
3973 chr5 37697794 37697794 1 + C T STAD 37697804 + 37697784 37697824 41 GCTCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTC GCTCATGACTTGGGCACAGACACTTCTTGCGTGACTTTTTC < 41bp 1 0.395965824740517 1 0.0327509045600891 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697804 chr5:37697794 nonsynonymous SNV 0.990 0 11 hm5C_associated_SNPs_38309 0 0 0 2 37697785 37697805 mRNA hsa-miR-431 WDR70 miRanda miRanda
3974 chr5 37697794 37697794 1 + C T STAD 37697806 + 37697786 37697826 41 TCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTCCT TCATGACTTGGGCACAGACACTTCTTGCGTGACTTTTTCCT < 41bp 1 0.266415090497018 1 0.0555252730846405 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697806 chr5:37697794 nonsynonymous SNV 0.990 0 9 hm5C_associated_SNPs_38310 0 0 0 2 37697782 37697809 mRNA hsa-miR-372 WDR70 miRanda miRanda
3975 chr5 37697794 37697794 1 + C T STAD 37697806 + 37697786 37697826 41 TCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTCCT TCATGACTTGGGCACAGACACTTCTTGCGTGACTTTTTCCT < 41bp 1 0.266415090497018 1 0.0555252730846405 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697806 chr5:37697794 nonsynonymous SNV 0.990 0 9 hm5C_associated_SNPs_38310 0 0 0 2 37697785 37697805 mRNA hsa-miR-431 WDR70 miRanda miRanda
3976 chr20 43545461 43545461 1 + C T STAD 43545459 + 43545439 43545479 41 CATTTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACAC CATTTTGAGACCCATGAGGCCGTACAGCAGGCCATCAACAC < 41bp 1 0.0961904035852063 1 0.0257230699062347 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545459 chr20:43545461 nonsynonymous SNV 0.067 4 23 hm5C_associated_SNPs_38333 0 0 1 1 43545452 43545470 mRNA hsa-miR-370 PABPC1L miRanda miRanda
3977 chr20 279025 279025 1 + C T STAD 279018 + 278998 279038 41 CATCCTCTTCCGGAACGAGACGGTGGACGTGGAGGACATTG CATCCTCTTCCGGAACGAGACGGTGGATGTGGAGGACATTG < 41bp 1 0.570666972353456 1 0.500954806804657 experiment 0.858666055293088 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZCCHC3 ENSG00000177764 CDS Human other chr20:279018 chr20:279025 synonymous SNV . 0 28 hm5C_associated_SNPs_38376 0 0 1 1 279025 279045 mRNA hsa-miR-224 ZCCHC3 miRanda miRanda
3978 chr3 134851683 134851683 1 + C T STAD 134851688 + 134851668 134851708 41 CATCTGCAAAAAGTGCCGGGCAGACCGCCGGAGCTGCTCCC CATCTGCAAAAAGTGTCGGGCAGACCGCCGGAGCTGCTCCC < 41bp 1 0.115883905724237 1 0.676267504692078 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134851688 chr3:134851683 synonymous SNV . 0 16 hm5C_associated_SNPs_38527 0 0 0 1 134851669 134851693 mRNA hsa-miR-346 EPHB1 miRanda miRanda
3979 chr3 134851684 134851684 1 + C T STAD 134851688 + 134851668 134851708 41 CATCTGCAAAAAGTGCCGGGCAGACCGCCGGAGCTGCTCCC CATCTGCAAAAAGTGCTGGGCAGACCGCCGGAGCTGCTCCC < 41bp 1 0.132210000245971 1 0.552149653434753 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134851688 chr3:134851684 nonsynonymous SNV 0.968 2 17 hm5C_associated_SNPs_38550 0 0 0 1 134851669 134851693 mRNA hsa-miR-346 EPHB1 miRanda miRanda
3980 chrX 73045197 73045197 1 - A G STAD 73045203 - 73045183 73045223 41 TGTGGATACAAAGAAAGGAGCAAGCATAAAAAAGTGCTCTT TGTGGATACAAAGAAAGGAGCAAGCACAAAAAAGTGCTCTT < 41bp 1 0.145513146346812 1 0.357937723398209 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045203 chrX:73045197 . . 0 27 hm5C_associated_SNPs_38610 0 0 1 1 73045181 73045200 lncRNA hsa-miR-1276 XIST miRanda starBase2
3981 chrX 73045197 73045197 1 - A G STAD 73045215 - 73045195 73045235 41 TGTGATAAGCGTTGTGGATACAAAGAAAGGAGCAAGCATAA TGTGATAAGCGTTGTGGATACAAAGAAAGGAGCAAGCACAA < 41bp 1 0.336625298314479 1 0.453033566474915 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045215 chrX:73045197 . . 0 39 hm5C_associated_SNPs_38611 0 0 1 1 73045181 73045200 lncRNA hsa-miR-1276 XIST miRanda starBase2
3982 chr7 92926147 92926147 1 + A T STAD 92926143 + 92926123 92926163 41 ATCTTTGTTTTGGATATAATCAGCAGGTAGTATTTAAGATC ATCTTTGTTTTGGATATAATCAGCTGGTAGTATTTAAGATC < 41bp 1 0.471865110628775 1 0.792846322059631 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92926143 chr7:92926147 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_38616 0 0 1 2 92926137 92926148 mRNA hsa-miR-217 CCDC132 miRanda miRanda
3983 chr7 92926147 92926147 1 + A T STAD 92926143 + 92926123 92926163 41 ATCTTTGTTTTGGATATAATCAGCAGGTAGTATTTAAGATC ATCTTTGTTTTGGATATAATCAGCTGGTAGTATTTAAGATC < 41bp 1 0.471865110628775 1 0.792846322059631 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92926143 chr7:92926147 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_38616 0 0 1 2 92926130 92926148 mRNA hsa-miR-370 CCDC132 miRanda miRanda
3984 chr20 2843946 2843946 1 + C T STAD 2843957 + 2843937 2843977 41 CTCGTGTTGCGGAGACTTTACCCCCTGGCCATCCAGATATG CTCGTGTTGTGGAGACTTTACCCCCTGGCCATCCAGATATG < 41bp 1 0.26803805895955 1 0.0622218549251556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843957 chr20:2843946 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_38638 0 0 0 1 2843936 2843951 mRNA hsa-miR-150 VPS16 miRanda miRanda
3985 chr9 93624564 93624564 1 + G A STAD 93624554 + 93624534 93624574 41 CACGAAGGGAAGGTGCTGCACTATCGCATCGACAAAGACAA CACGAAGGGAAGGTGCTGCACTATCGCATCAACAAAGACAA < 41bp 1 0.203340919154624 1 0.0489352345466614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624554 chr9:93624564 nonsynonymous SNV 0.349 2 31 hm5C_associated_SNPs_38641 0 0 0 2 93624560 93624582 mRNA hsa-miR-339-5p SYK miRanda miRanda
3986 chr9 93624564 93624564 1 + G A STAD 93624554 + 93624534 93624574 41 CACGAAGGGAAGGTGCTGCACTATCGCATCGACAAAGACAA CACGAAGGGAAGGTGCTGCACTATCGCATCAACAAAGACAA < 41bp 1 0.203340919154624 1 0.0489352345466614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624554 chr9:93624564 nonsynonymous SNV 0.349 2 31 hm5C_associated_SNPs_38641 0 0 0 2 93624548 93624570 mRNA hsa-miR-450a SYK miRanda miRanda
3987 chr22 45580379 45580379 1 + C T STAD 45580373 + 45580353 45580393 41 TCTGATTCCACCCAATATGCCATGTACGCGAACAGGGAAGA TCTGATTCCACCCAATATGCCATGTATGCGAACAGGGAAGA < 41bp 1 0.214577259495943 1 0.0911376774311066 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP50 ENSG00000093000 CDS Human protein_coding chr22:45580373 chr22:45580379 nonsynonymous SNV 0.992 1 27 hm5C_associated_SNPs_38642 0 0 1 1 45580359 45580382 mRNA hsa-miR-221 NUP50 miRanda miRanda
3988 chr12 112579948 112579948 1 + T G TGCT 112579938 + 112579918 112579958 41 GAATAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAAGAGA GAATAGAGGCCAACAGCCCCCCAAAGAGGGGGGTGAAGAGA < 41bp 1 0.323310441939123 1 0.452161818742752 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112579938 chr12:112579948 nonsynonymous SNV . 0 31 hm5C_associated_SNPs_38743 0 0 0 1 112579933 112579954 mRNA hsa-miR-197 TRAFD1 miRanda miRanda
3989 chr14 105175694 105175694 1 + C A THCA 105175682 + 105175662 105175702 41 CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTC CCAAGTTTGATGTGGAGGTTCTCAAACAACTCATTAAGCTC < 41bp 1 0.479483733504038 1 0.848838448524475 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105175682 chr14:105175694 nonsynonymous SNV 0.961 0 33 hm5C_associated_SNPs_38791 0 0 1 2 105175682 105175705 mRNA hsa-miR-28-5p INF2 miRanda miRanda
3990 chr14 105175694 105175694 1 + C A THCA 105175682 + 105175662 105175702 41 CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTC CCAAGTTTGATGTGGAGGTTCTCAAACAACTCATTAAGCTC < 41bp 1 0.479483733504038 1 0.848838448524475 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105175682 chr14:105175694 nonsynonymous SNV 0.961 0 33 hm5C_associated_SNPs_38791 0 0 1 2 105175683 105175705 mRNA hsa-miR-708 INF2 miRanda miRanda
3991 chr5 134130604 134130604 1 + C A THCA 134130605 + 134130585 134130625 41 ATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGGC ATGTTTTCAGCTACTTTCCACAGAGCTATGGAGGCTTTGGC < 41bp 1 0.401686689121677 1 0.0960309207439423 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130605 chr5:134130604 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_38818 0 0 1 2 134130588 134130610 mRNA hsa-miR-330-5p DDX46 miRanda miRanda
3992 chr5 134130604 134130604 1 + C A THCA 134130605 + 134130585 134130625 41 ATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGGC ATGTTTTCAGCTACTTTCCACAGAGCTATGGAGGCTTTGGC < 41bp 1 0.401686689121677 1 0.0960309207439423 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130605 chr5:134130604 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_38818 0 0 1 2 134130591 134130610 mRNA hsa-miR-326 DDX46 miRanda miRanda
3993 chr6 151646999 151646999 1 + C T THCA 151647007 + 151646987 151647027 41 ACTTAAAATATGCTGGGGACCATCACCATCACAGGTAAGGC ACTTAAAATATGTTGGGGACCATCACCATCACAGGTAAGGC < 41bp 1 0.1546950143397 1 0.105598211288452 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151647007 chr6:151646999 synonymous SNV . 0 13 hm5C_associated_SNPs_38825 0 0 1 1 151646987 151647003 mRNA hsa-miR-338-3p AKAP12 miRanda miRanda
3994 chr6 33243782 33243782 1 + A G THCA 33243772 + 33243752 33243792 41 TGATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCA TGATCACCATTATGCAGAATCCACGCCAGTGCAAGATCCCA < 41bp 1 0.203253240235643 1 0.0317802131175995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243772 chr6:33243782 nonsynonymous SNV 0.994 4 31 hm5C_associated_SNPs_38848 0 0 1 2 33243761 33243782 mRNA hsa-miR-193a-3p RPS18 miRanda miRanda
3995 chr6 33243782 33243782 1 + A G THCA 33243772 + 33243752 33243792 41 TGATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCA TGATCACCATTATGCAGAATCCACGCCAGTGCAAGATCCCA < 41bp 1 0.203253240235643 1 0.0317802131175995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243772 chr6:33243782 nonsynonymous SNV 0.994 4 31 hm5C_associated_SNPs_38848 0 0 1 2 33243761 33243782 mRNA hsa-miR-193b RPS18 miRanda miRanda
3996 chr6 33243782 33243782 1 + A G THCA 33243783 + 33243763 33243803 41 ATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTCTT ATGCAGAATCCACGCCAGTGCAAGATCCCAGACTGGTTCTT < 41bp 1 0.774320462805559 1 0.230892360210419 experiment 0.451359074388882 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243783 chr6:33243782 nonsynonymous SNV 0.994 4 20 hm5C_associated_SNPs_38849 0 0 1 2 33243761 33243782 mRNA hsa-miR-193a-3p RPS18 miRanda miRanda
3997 chr6 33243782 33243782 1 + A G THCA 33243783 + 33243763 33243803 41 ATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTCTT ATGCAGAATCCACGCCAGTGCAAGATCCCAGACTGGTTCTT < 41bp 1 0.774320462805559 1 0.230892360210419 experiment 0.451359074388882 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243783 chr6:33243782 nonsynonymous SNV 0.994 4 20 hm5C_associated_SNPs_38849 0 0 1 2 33243761 33243782 mRNA hsa-miR-193b RPS18 miRanda miRanda
3998 chr17 30687706 30687706 1 + C A THCA 30687710 + 30687690 30687730 41 TCAGCCACAGCCTGTTCAACCTCAGCAAGGTTATATTCCTC TCAGCCACAGCCTGTTAAACCTCAGCAAGGTTATATTCCTC < 41bp 1 0.71073295371458 1 0.0717876255512238 experiment 0.578534092570839 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30687710 chr17:30687706 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_38852 0 0 1 1 30687687 30687708 mRNA hsa-miR-488 ZNF207 miRanda miRanda
3999 chr14 75190043 75190043 1 + C G THCA 75190025 + 75190005 75190045 41 CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTA CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTGTA < 41bp 1 0.696251664546681 1 0.156184643507004 experiment 0.607496670906638 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190025 chr14:75190043 nonsynonymous SNV 0.993 4 39 hm5C_associated_SNPs_38888 0 0 1 2 75190034 75190047 mRNA hsa-miR-182 FCF1 miRanda miRanda
4000 chr14 75190043 75190043 1 + C G THCA 75190025 + 75190005 75190045 41 CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTA CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTGTA < 41bp 1 0.696251664546681 1 0.156184643507004 experiment 0.607496670906638 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190025 chr14:75190043 nonsynonymous SNV 0.993 4 39 hm5C_associated_SNPs_38888 0 0 1 2 75190041 75190047 mRNA hsa-miR-127-3p FCF1 miRanda miRanda
4001 chr1 10231345 10231345 1 + G T THYM 10231351 + 10231331 10231371 41 GATATTTACTTACAGCTGGACTGTGCTCGGTTCGCGAAAGC GATATTTACTTACATCTGGACTGTGCTCGGTTCGCGAAAGC < 41bp 1 0.227663848847563 1 0.107023864984512 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10231351 chr1:10231345 nonsynonymous SNV 0.995 1 15 hm5C_associated_SNPs_38981 0 0 1 1 10231326 10231350 mRNA hsa-miR-199b-5p UBE4B miRanda miRanda
4002 chrX 152959702 152959702 1 + G A UCEC 152959707 + 152959687 152959727 41 CTCTGCTTTGTCATCGATCTCTCCATGGTGACTGATGTGAG CTCTGCTTTGTCATCAATCTCTCCATGGTGACTGATGTGAG < 41bp 1 0.767474832017441 1 0.950749456882477 experiment 0.465050335965119 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959707 chrX:152959702 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_39078 0 0 1 4 152959697 152959720 mRNA hsa-miR-29a SLC6A8 miRanda miRanda
4003 chrX 152959702 152959702 1 + G A UCEC 152959707 + 152959687 152959727 41 CTCTGCTTTGTCATCGATCTCTCCATGGTGACTGATGTGAG CTCTGCTTTGTCATCAATCTCTCCATGGTGACTGATGTGAG < 41bp 1 0.767474832017441 1 0.950749456882477 experiment 0.465050335965119 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959707 chrX:152959702 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_39078 0 0 1 4 152959696 152959720 mRNA hsa-miR-29b SLC6A8 miRanda miRanda
4004 chrX 152959702 152959702 1 + G A UCEC 152959707 + 152959687 152959727 41 CTCTGCTTTGTCATCGATCTCTCCATGGTGACTGATGTGAG CTCTGCTTTGTCATCAATCTCTCCATGGTGACTGATGTGAG < 41bp 1 0.767474832017441 1 0.950749456882477 experiment 0.465050335965119 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959707 chrX:152959702 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_39078 0 0 1 4 152959687 152959711 mRNA hsa-miR-185 SLC6A8 miRanda miRanda
4005 chrX 152959702 152959702 1 + G A UCEC 152959707 + 152959687 152959727 41 CTCTGCTTTGTCATCGATCTCTCCATGGTGACTGATGTGAG CTCTGCTTTGTCATCAATCTCTCCATGGTGACTGATGTGAG < 41bp 1 0.767474832017441 1 0.950749456882477 experiment 0.465050335965119 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959707 chrX:152959702 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_39078 0 0 1 4 152959697 152959720 mRNA hsa-miR-29c SLC6A8 miRanda miRanda
4006 chrX 152959702 152959702 1 + G A UCEC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATCAATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.309439072020366 1 0.0752876996994019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959702 nonsynonymous SNV 0.998 1 5 hm5C_associated_SNPs_39079 0 0 1 4 152959697 152959720 mRNA hsa-miR-29a SLC6A8 miRanda miRanda
4007 chrX 152959702 152959702 1 + G A UCEC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATCAATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.309439072020366 1 0.0752876996994019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959702 nonsynonymous SNV 0.998 1 5 hm5C_associated_SNPs_39079 0 0 1 4 152959696 152959720 mRNA hsa-miR-29b SLC6A8 miRanda miRanda
4008 chrX 152959702 152959702 1 + G A UCEC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATCAATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.309439072020366 1 0.0752876996994019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959702 nonsynonymous SNV 0.998 1 5 hm5C_associated_SNPs_39079 0 0 1 4 152959687 152959711 mRNA hsa-miR-185 SLC6A8 miRanda miRanda
4009 chrX 152959702 152959702 1 + G A UCEC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATCAATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.309439072020366 1 0.0752876996994019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959702 nonsynonymous SNV 0.998 1 5 hm5C_associated_SNPs_39079 0 0 1 4 152959697 152959720 mRNA hsa-miR-29c SLC6A8 miRanda miRanda
4010 chr16 50261756 50261756 1 + G A UCEC 50261765 + 50261745 50261785 41 GTTAGGATTCCGATGCAACACCATGCAAAACCCCGAAACAG GTTAGGATTCCAATGCAACACCATGCAAAACCCCGAAACAG < 41bp 1 0.194655960407818 1 0.622231781482697 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAPD5 ENSG00000121274 CDS Human protein_coding chr16:50261765 chr16:50261756 nonsynonymous SNV 0.996 4 12 hm5C_associated_SNPs_39091 0 0 1 1 50261750 50261771 mRNA hsa-miR-138 PAPD5 miRanda miRanda
4011 chr2 152276723 152276723 1 + A C UCEC 152276742 + 152276722 152276762 41 AATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGG ACTTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGG < 41bp 1 0.34530248300135 1 0.194058030843735 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIF1 ENSG00000080345 CDS Human protein_coding chr2:152276742 chr2:152276723 nonsynonymous SNV 0.944 0 2 hm5C_associated_SNPs_39111 0 0 1 1 152276715 152276736 mRNA hsa-miR-150 RIF1 miRanda miRanda
4012 chr12 22208495 22208495 1 + C A UCEC 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TATCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT < 41bp 1 0.310194331635683 1 0.107810348272324 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208495 nonsynonymous SNV 0.996 3 2 hm5C_associated_SNPs_39188 0 0 1 3 22208487 22208507 mRNA hsa-miR-371-5p CMAS miRanda miRanda
4013 chr12 22208495 22208495 1 + C A UCEC 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TATCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT < 41bp 1 0.310194331635683 1 0.107810348272324 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208495 nonsynonymous SNV 0.996 3 2 hm5C_associated_SNPs_39188 0 0 1 3 22208484 22208506 mRNA hsa-miR-377 CMAS miRanda miRanda
4014 chr12 22208495 22208495 1 + C A UCEC 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TATCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT < 41bp 1 0.310194331635683 1 0.107810348272324 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208495 nonsynonymous SNV 0.996 3 2 hm5C_associated_SNPs_39188 0 0 1 3 22208484 22208507 mRNA hsa-miR-342-3p CMAS miRanda miRanda
4015 chr15 74000686 74000686 1 + C A UCEC 74000701 + 74000681 74000721 41 GCAGCCTATGACATTCCCCCCAGAGGCCCTGTGGGTGACCG GCAGCATATGACATTCCCCCCAGAGGCCCTGTGGGTGACCG < 41bp 1 0.454324406056372 1 0.812351942062378 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD276 ENSG00000103855 CDS Human protein_coding chr15:74000701 chr15:74000686 nonsynonymous SNV 0.778 1 6 hm5C_associated_SNPs_39213 0 0 1 3 74000680 74000698 mRNA hsa-miR-1 CD276 miRanda miRanda
4016 chr15 74000686 74000686 1 + C A UCEC 74000701 + 74000681 74000721 41 GCAGCCTATGACATTCCCCCCAGAGGCCCTGTGGGTGACCG GCAGCATATGACATTCCCCCCAGAGGCCCTGTGGGTGACCG < 41bp 1 0.454324406056372 1 0.812351942062378 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD276 ENSG00000103855 CDS Human protein_coding chr15:74000701 chr15:74000686 nonsynonymous SNV 0.778 1 6 hm5C_associated_SNPs_39213 0 0 1 3 74000680 74000698 mRNA hsa-miR-206 CD276 miRanda miRanda
4017 chr15 74000686 74000686 1 + C A UCEC 74000701 + 74000681 74000721 41 GCAGCCTATGACATTCCCCCCAGAGGCCCTGTGGGTGACCG GCAGCATATGACATTCCCCCCAGAGGCCCTGTGGGTGACCG < 41bp 1 0.454324406056372 1 0.812351942062378 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD276 ENSG00000103855 CDS Human protein_coding chr15:74000701 chr15:74000686 nonsynonymous SNV 0.778 1 6 hm5C_associated_SNPs_39213 0 0 1 3 74000680 74000698 mRNA hsa-miR-613 CD276 miRanda miRanda
4018 chr10 135197561 135197561 1 + A C UCEC 135197543 + 135197523 135197563 41 GAAGCAATCAGGAAGATAGGCTTTGGGACCAACAACAAAAT GAAGCAATCAGGAAGATAGGCTTTGGGACCAACAACAACAT < 41bp 1 0.176250181115214 1 0.0525492131710052 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAOX ENSG00000148832 CDS Human protein_coding chr10:135197543 chr10:135197561 nonsynonymous SNV 0.997 5 39 hm5C_associated_SNPs_39234 0 0 0 1 135197561 135197580 mRNA hsa-miR-371-5p PAOX miRanda miRanda
4019 chr17 16343398 16343398 1 + A T UCEC 16343379 + 16343359 16343399 41 GAAATCACTAATAGGAAGTGCCGTCAGAAGCGATAACTGAC GAAATCACTAATAGGAAGTGCCGTCAGAAGCGATAACTGTC < 41bp 1 0.0272113204253479 1 0.168402314186096 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD49A ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16343379 chr17:16343398 . . 0 40 hm5C_associated_SNPs_39255 0 0 1 1 16343380 16343400 mRNA hsa-miR-223 SNORD49A miRanda miRanda
4020 chr17 16343398 16343398 1 + A T UCEC 16343415 + 16343395 16343435 41 CTGACGAAGACTACTCCTGTCTGATTGCAGTCAAGTCTTCA CTGTCGAAGACTACTCCTGTCTGATTGCAGTCAAGTCTTCA < 41bp 1 0.229096645959977 1 0.0480892360210419 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD49A ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16343415 chr17:16343398 . . 0 4 hm5C_associated_SNPs_39256 0 0 1 1 16343380 16343400 mRNA hsa-miR-223 SNORD49A miRanda miRanda
4021 chr1 28975184 28975184 1 + G T UCEC 28975167 + 28975147 28975187 41 CAACTCGATTGCTCTGCGTGCGGAATCGACATCAAGAGATT CAACTCGATTGCTCTGCGTGCGGAATCGACATCAAGATATT < 41bp 1 0.717175501982371 1 0.75053346157074 experiment 0.565648996035257 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975167 chr1:28975184 . . 0 38 hm5C_associated_SNPs_39321 0 0 1 2 28975167 28975188 mRNA hsa-miR-216b RNU11 miRanda miRanda
4022 chr1 28975184 28975184 1 + G T UCEC 28975167 + 28975147 28975187 41 CAACTCGATTGCTCTGCGTGCGGAATCGACATCAAGAGATT CAACTCGATTGCTCTGCGTGCGGAATCGACATCAAGATATT < 41bp 1 0.717175501982371 1 0.75053346157074 experiment 0.565648996035257 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975167 chr1:28975184 . . 0 38 hm5C_associated_SNPs_39321 0 0 1 2 28975167 28975188 lncRNA hsa-miR-216b-5p AL360012.1 miRanda starBase2
4023 chr1 28975184 28975184 1 + G T UCEC 28975176 + 28975156 28975196 41 TGCTCTGCGTGCGGAATCGACATCAAGAGATTTCGGAAGCA TGCTCTGCGTGCGGAATCGACATCAAGATATTTCGGAAGCA < 41bp 1 0.569700862440325 1 0.0594179332256317 experiment 0.860598275119351 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975176 chr1:28975184 . . 0 29 hm5C_associated_SNPs_39322 0 0 1 2 28975167 28975188 mRNA hsa-miR-216b RNU11 miRanda miRanda
4024 chr1 28975184 28975184 1 + G T UCEC 28975176 + 28975156 28975196 41 TGCTCTGCGTGCGGAATCGACATCAAGAGATTTCGGAAGCA TGCTCTGCGTGCGGAATCGACATCAAGATATTTCGGAAGCA < 41bp 1 0.569700862440325 1 0.0594179332256317 experiment 0.860598275119351 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975176 chr1:28975184 . . 0 29 hm5C_associated_SNPs_39322 0 0 1 2 28975167 28975188 lncRNA hsa-miR-216b-5p AL360012.1 miRanda starBase2
4025 chr11 65267170 65267170 1 + G T UCEC 65267153 + 65267133 65267173 41 AAAACTGGAAGACAGAAGTACGGGAAGGCGAAGAAAAGAAT AAAACTGGAAGACAGAAGTACGGGAAGGCGAAGAAAATAAT < 41bp 1 0.678890880122835 1 0.690313160419464 experiment 0.642218239754331 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267153 chr11:65267170 . . 0 38 hm5C_associated_SNPs_39349 0 0 1 1 65267160 65267181 lncRNA hsa-miR-942-5p MALAT1 miRanda starBase2
4026 chr15 25220518 25220518 1 + G A UCEC 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAATAGCAAGATGCTGCAGCACATTGACTATAGA < 41bp 1 0.581020943009675 1 0.490265488624573 experiment 0.83795811398065 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220518 nonsynonymous SNV 0.997 1 10 hm5C_associated_SNPs_39382 0 0 1 2 25220511 25220533 mRNA hsa-miR-103 SNURF miRanda miRanda
4027 chr15 25220518 25220518 1 + G A UCEC 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAATAGCAAGATGCTGCAGCACATTGACTATAGA < 41bp 1 0.581020943009675 1 0.490265488624573 experiment 0.83795811398065 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220518 nonsynonymous SNV 0.997 1 10 hm5C_associated_SNPs_39382 0 0 1 2 25220511 25220533 mRNA hsa-miR-107 SNURF miRanda miRanda
4028 chr20 44526721 44526721 1 + C A UCEC 44526703 + 44526683 44526723 41 GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTCTC GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTATC < 41bp 1 0.629660855918504 1 0.50862729549408 experiment 0.740678288162991 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44526703 chr20:44526721 nonsynonymous SNV 0.899 3 39 hm5C_associated_SNPs_39393 0 0 1 2 44526709 44526730 mRNA hsa-miR-299-3p CTSA miRanda miRanda
4029 chr20 44526721 44526721 1 + C A UCEC 44526703 + 44526683 44526723 41 GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTCTC GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTATC < 41bp 1 0.629660855918504 1 0.50862729549408 experiment 0.740678288162991 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44526703 chr20:44526721 nonsynonymous SNV 0.899 3 39 hm5C_associated_SNPs_39393 0 0 1 2 44526706 44526728 mRNA hsa-miR-491-5p CTSA miRanda miRanda
4030 chr11 65267072 65267072 1 + G T UCEC 65267054 + 65267034 65267074 41 AAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGA AAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATTGA < 41bp 1 0.433393305066301 1 0.131114840507507 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267054 chr11:65267072 . . 0 39 hm5C_associated_SNPs_39395 0 0 1 1 65267068 65267090 lncRNA hsa-miR-150-5p MALAT1 miRanda starBase2
4031 chr11 65267072 65267072 1 + G T UCEC 65267059 + 65267039 65267079 41 TAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGAT TAGTTAACGCATTTACTAAACGCAGACGAAAATTGAAAGAT < 41bp 1 0.435069760240893 1 0.485564857721329 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267059 chr11:65267072 . . 0 34 hm5C_associated_SNPs_39396 0 0 1 1 65267068 65267090 lncRNA hsa-miR-150-5p MALAT1 miRanda starBase2
4032 chr11 65267072 65267072 1 + G T UCEC 65267061 + 65267041 65267081 41 GTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTA GTTAACGCATTTACTAAACGCAGACGAAAATTGAAAGATTA < 41bp 1 0.22913850703613 1 0.167847812175751 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267061 chr11:65267072 . . 0 32 hm5C_associated_SNPs_39397 0 0 1 1 65267068 65267090 lncRNA hsa-miR-150-5p MALAT1 miRanda starBase2
4033 chr11 65267072 65267072 1 + G T UCEC 65267065 + 65267045 65267085 41 ACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTG ACGCATTTACTAAACGCAGACGAAAATTGAAAGATTAATTG < 41bp 1 0.396895923304292 1 0.41642290353775 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267065 chr11:65267072 . . 0 28 hm5C_associated_SNPs_39398 0 0 1 1 65267068 65267090 lncRNA hsa-miR-150-5p MALAT1 miRanda starBase2
4034 chr4 1332373 1332373 1 + A G UCEC 1332384 + 1332364 1332404 41 CCGCCCATGATGCTGCCCAACGGCTACGTCTACGGCTACAA CCGCCCATGGTGCTGCCCAACGGCTACGTCTACGGCTACAA < 41bp 1 0.665100428933961 1 0.409021198749542 experiment 0.669799142132079 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAEA ENSG00000090316 CDS Human protein_coding chr4:1332384 chr4:1332373 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_39479 0 0 1 3 1332361 1332380 mRNA hsa-miR-103 MAEA miRanda miRanda
4035 chr4 1332373 1332373 1 + A G UCEC 1332384 + 1332364 1332404 41 CCGCCCATGATGCTGCCCAACGGCTACGTCTACGGCTACAA CCGCCCATGGTGCTGCCCAACGGCTACGTCTACGGCTACAA < 41bp 1 0.665100428933961 1 0.409021198749542 experiment 0.669799142132079 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAEA ENSG00000090316 CDS Human protein_coding chr4:1332384 chr4:1332373 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_39479 0 0 1 3 1332361 1332380 mRNA hsa-miR-107 MAEA miRanda miRanda
4036 chr4 1332373 1332373 1 + A G UCEC 1332384 + 1332364 1332404 41 CCGCCCATGATGCTGCCCAACGGCTACGTCTACGGCTACAA CCGCCCATGGTGCTGCCCAACGGCTACGTCTACGGCTACAA < 41bp 1 0.665100428933961 1 0.409021198749542 experiment 0.669799142132079 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAEA ENSG00000090316 CDS Human protein_coding chr4:1332384 chr4:1332373 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_39479 0 0 1 3 1332367 1332392 mRNA hsa-miR-126 MAEA miRanda miRanda
4037 chr20 2635125 2635125 1 + C A UCEC 2635143 + 2635123 2635163 41 TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCCGCAATA TAATCTTGGGAGTTGGGGATCCCAAGATTGGTGCCGCAATA < 41bp 1 0.554773737911943 1 0.151892215013504 experiment 0.890452524176114 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635143 chr20:2635125 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_39488 0 0 1 1 2635114 2635135 mRNA hsa-miR-150 NOP56 miRanda miRanda
4038 chr12 95897859 95897859 1 + C T UCEC 95897862 + 95897842 95897882 41 GTGCTGGAATTGATGTTCGTCTGTGTGATGTTGGTGAGGCC GTGCTGGAATTGATGTTTGTCTGTGTGATGTTGGTGAGGCC < 41bp 1 0.550104769133932 1 0.656402468681335 experiment 0.899790461732136 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95897862 chr12:95897859 nonsynonymous SNV 0.992 4 18 hm5C_associated_SNPs_39490 0 0 1 2 95897850 95897870 mRNA hsa-miR-377 METAP2 miRanda miRanda
4039 chr12 95897859 95897859 1 + C T UCEC 95897862 + 95897842 95897882 41 GTGCTGGAATTGATGTTCGTCTGTGTGATGTTGGTGAGGCC GTGCTGGAATTGATGTTTGTCTGTGTGATGTTGGTGAGGCC < 41bp 1 0.550104769133932 1 0.656402468681335 experiment 0.899790461732136 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95897862 chr12:95897859 nonsynonymous SNV 0.992 4 18 hm5C_associated_SNPs_39490 0 0 1 2 95897843 95897870 mRNA hsa-miR-421 METAP2 miRanda miRanda
4040 chr11 65267975 65267975 1 + G T UCEC 65267961 + 65267941 65267981 41 ATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTC ATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCATCAGTTC < 41bp 1 0.629412906272839 1 0.354934632778168 experiment 0.741174187454322 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267961 chr11:65267975 . . 0 35 hm5C_associated_SNPs_39501 0 0 1 1 65267968 65267989 lncRNA hsa-miR-197-3p MALAT1 miRanda starBase2
4041 chr11 65267975 65267975 1 + G T UCEC 65267973 + 65267953 65267993 41 CTGAGGAGCAAGCGAGCAAGCAGCAGTTCGTGGTGAAGATA CTGAGGAGCAAGCGAGCAAGCATCAGTTCGTGGTGAAGATA < 41bp 1 0.662307116476437 1 0.429151386022568 experiment 0.675385767047126 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267973 chr11:65267975 . . 0 23 hm5C_associated_SNPs_39502 0 0 1 1 65267968 65267989 lncRNA hsa-miR-197-3p MALAT1 miRanda starBase2
4042 chr7 101925148 101925148 1 + C T UCEC 101925146 + 101925126 101925166 41 TCCCAGGGGCGTCTGGTTCTCTCCAACAAGATGGCGCGCAC TCCCAGGGGCGTCTGGTTCTCTTCAACAAGATGGCGCGCAC < 41bp 1 0.621020183791068 1 0.685818672180176 experiment 0.757959632417864 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101925146 chr7:101925148 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_39504 0 0 0 1 101925132 101925150 mRNA hsa-miR-185 CUX1 miRanda miRanda
4043 chr12 88439535 88439535 1 + A G UCEC 88439525 + 88439505 88439545 41 TTAGAACAAACACTGGAACTCATAGGAACAAATATCAATGG TTAGAACAAACACTGGAACTCATAGGAACAGATATCAATGG < 41bp 1 0.477597656908604 1 0.336816757917404 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C12orf29 ENSG00000133641 CDS Human protein_coding chr12:88439525 chr12:88439535 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_39510 0 0 1 1 88439514 88439536 mRNA hsa-miR-375 C12orf29 miRanda miRanda
4044 chr2 184023066 184023066 1 + G A UCEC 184023063 + 184023043 184023083 41 TTATCAATCTAAACTGCAGGCTCGGAAAGCCTTAAGCAAAG TTATCAATCTAAACTGCAGGCTCAGAAAGCCTTAAGCAAAG < 41bp 1 0.470724402200907 1 0.15846574306488 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP35 ENSG00000163002 CDS Human protein_coding chr2:184023063 chr2:184023066 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_39538 0 0 1 1 184023046 184023068 mRNA hsa-miR-615-3p NUP35 miRanda miRanda
4045 chr5 56545306 56545306 1 + G A UCEC 56545303 + 56545283 56545323 41 GCCTCGTCTAACCAAACTGACACGAATGCGCACTGATAAGA GCCTCGTCTAACCAAACTGACACAAATGCGCACTGATAAGA < 41bp 1 0.688210039072208 1 0.138661891222 experiment 0.623579921855584 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56545303 chr5:56545306 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_39543 0 0 1 3 56545297 56545318 mRNA hsa-miR-148a GPBP1 miRanda miRanda
4046 chr5 56545306 56545306 1 + G A UCEC 56545303 + 56545283 56545323 41 GCCTCGTCTAACCAAACTGACACGAATGCGCACTGATAAGA GCCTCGTCTAACCAAACTGACACAAATGCGCACTGATAAGA < 41bp 1 0.688210039072208 1 0.138661891222 experiment 0.623579921855584 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56545303 chr5:56545306 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_39543 0 0 1 3 56545298 56545318 mRNA hsa-miR-152 GPBP1 miRanda miRanda
4047 chr5 56545306 56545306 1 + G A UCEC 56545303 + 56545283 56545323 41 GCCTCGTCTAACCAAACTGACACGAATGCGCACTGATAAGA GCCTCGTCTAACCAAACTGACACAAATGCGCACTGATAAGA < 41bp 1 0.688210039072208 1 0.138661891222 experiment 0.623579921855584 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56545303 chr5:56545306 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_39543 0 0 1 3 56545297 56545318 mRNA hsa-miR-148b GPBP1 miRanda miRanda
4048 chrX 48759707 48759707 1 + G A UCEC 48759703 + 48759683 48759723 41 GACAGGGAACGGGATCGGGACCGCGGGTATGACAAGGCAGA GACAGGGAACGGGATCGGGACCGCAGGTATGACAAGGCAGA < 41bp 1 0.588354568054834 1 0.0586557388305664 experiment 0.823290863890332 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759703 chrX:48759707 nonsynonymous SNV 0.573 3 25 hm5C_associated_SNPs_39579 0 0 1 1 48759701 48759725 mRNA hsa-miR-346 PQBP1 miRanda miRanda
4049 chrX 48759707 48759707 1 + G A UCEC 48759704 + 48759684 48759724 41 ACAGGGAACGGGATCGGGACCGCGGGTATGACAAGGCAGAC ACAGGGAACGGGATCGGGACCGCAGGTATGACAAGGCAGAC < 41bp 1 0.787589721104631 1 0.22902974486351 experiment 0.424820557790738 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759704 chrX:48759707 nonsynonymous SNV 0.573 3 24 hm5C_associated_SNPs_39580 0 0 1 1 48759701 48759725 mRNA hsa-miR-346 PQBP1 miRanda miRanda
4050 chrX 48759707 48759707 1 + G A UCEC 48759720 + 48759700 48759740 41 GGACCGCGGGTATGACAAGGCAGACCGGGAAGAGGGCAAAG GGACCGCAGGTATGACAAGGCAGACCGGGAAGAGGGCAAAG < 41bp 1 0.571647701641416 1 0.170189052820206 experiment 0.856704596717167 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759720 chrX:48759707 nonsynonymous SNV 0.573 3 8 hm5C_associated_SNPs_39581 0 0 1 1 48759701 48759725 mRNA hsa-miR-346 PQBP1 miRanda miRanda
4051 chrX 73046747 73046747 1 - A G UCEC 73046754 - 73046734 73046774 41 GTTGGATGGAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAGA GTTGGATGGAAGTCTCAAGGCTTGAGTCAGAAGTCTTAAGA < 41bp 1 0.567936564499194 1 0.128127545118332 experiment 0.864126871001613 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046754 chrX:73046747 . . 0 28 hm5C_associated_SNPs_39587 0 0 1 1 73046736 73046756 lncRNA hsa-miR-499a-5p XIST miRanda starBase2
4052 chr7 77214872 77214872 1 + G A UCEC 77214877 + 77214857 77214897 41 TAGATCATTGTAATGGCCTGCCGAGAATTTGAGATGGGAAG TAGATCATTGTAATGACCTGCCGAGAATTTGAGATGGGAAG < 41bp 1 0.11512021515674 1 0.703410983085632 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77214877 chr7:77214872 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_39598 0 0 1 1 77214868 77214893 mRNA hsa-miR-216a PTPN12 miRanda miRanda
4053 chr7 77214872 77214872 1 + G A UCEC 77214878 + 77214858 77214898 41 AGATCATTGTAATGGCCTGCCGAGAATTTGAGATGGGAAGG AGATCATTGTAATGACCTGCCGAGAATTTGAGATGGGAAGG < 41bp 1 0.791870860121156 1 0.766907930374146 experiment 0.416258279757688 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77214878 chr7:77214872 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_39599 0 0 1 1 77214868 77214893 mRNA hsa-miR-216a PTPN12 miRanda miRanda
4054 chr19 7620175 7620175 1 + G A UCEC 7620161 + 7620141 7620181 41 CTCTACGAGAAGGTTTTCTCCAGGCGCGCGGACCGGCACAG CTCTACGAGAAGGTTTTCTCCAGGCGCGCGGACCAGCACAG < 41bp 1 0.618410100672495 1 0.910398483276367 experiment 0.763179798655009 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620161 chr19:7620175 nonsynonymous SNV 0.992 0 35 hm5C_associated_SNPs_39624 0 0 1 1 7620164 7620188 mRNA hsa-miR-372 PNPLA6 miRanda miRanda
4055 chr6 142519615 142519615 1 + C T UCEC 142519603 + 142519583 142519623 41 AGAAAATGAAGATGCTGGAGCAGCCTCTCTGCCCACTCAGC AGAAAATGAAGATGCTGGAGCAGCCTCTCTGCTCACTCAGC < 41bp 1 0.31438383629903 1 0.317446649074554 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VTA1 ENSG00000009844 CDS Human protein_coding chr6:142519603 chr6:142519615 nonsynonymous SNV 1.000 0 33 hm5C_associated_SNPs_39635 0 0 1 1 142519595 142519616 mRNA hsa-miR-31 VTA1 miRanda miRanda
4056 chr1 10332318 10332318 1 + A C UCEC 10332306 + 10332286 10332326 41 GTATTTATTTTAGGAAGGAGCAAATATTAATAAGTCTCTTA GTATTTATTTTAGGAAGGAGCAAATATTAATACGTCTCTTA < 41bp 1 0.0426958591029395 1 0.157997131347656 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10332306 chr1:10332318 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_39737 0 0 1 1 10332312 10332333 mRNA hsa-miR-382 KIF1B miRanda miRanda
4057 chr3 20019810 20019810 1 + G A UCEC 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAATCCTATGCAGATGACAATAGTTTATTATTCATGGA < 41bp 1 0.478686658219423 1 0.138228982686996 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019810 synonymous SNV . 0 6 hm5C_associated_SNPs_39767 0 0 1 2 20019802 20019810 mRNA hsa-miR-218 RAB5A miRanda miRanda
4058 chr3 20019810 20019810 1 + G A UCEC 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAATCCTATGCAGATGACAATAGTTTATTATTCATGGA < 41bp 1 0.478686658219423 1 0.138228982686996 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019810 synonymous SNV . 0 6 hm5C_associated_SNPs_39767 0 0 1 2 20019802 20019820 mRNA hsa-miR-153 RAB5A miRanda miRanda
4059 chr10 17277845 17277845 1 + G A UCEC 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGAATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG < 41bp 1 0.0619648514550018 1 0.507292807102203 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277845 synonymous SNV . 0 8 hm5C_associated_SNPs_39768 0 0 1 1 17277845 17277853 mRNA hsa-miR-539 VIM miRanda miRanda
4060 chr20 39721177 39721177 1 + T G UCEC 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATGTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT < 41bp 1 0.0689234539420216 1 0.0365831851959229 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721177 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_39775 0 0 1 5 39721157 39721178 mRNA hsa-miR-200b TOP1 miRanda miRanda
4061 chr20 39721177 39721177 1 + T G UCEC 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATGTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT < 41bp 1 0.0689234539420216 1 0.0365831851959229 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721177 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_39775 0 0 1 5 39721156 39721178 mRNA hsa-miR-200c TOP1 miRanda miRanda
4062 chr20 39721177 39721177 1 + T G UCEC 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATGTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT < 41bp 1 0.0689234539420216 1 0.0365831851959229 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721177 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_39775 0 0 1 5 39721157 39721178 mRNA hsa-miR-429 TOP1 miRanda miRanda
4063 chr20 39721177 39721177 1 + T G UCEC 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATGTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT < 41bp 1 0.0689234539420216 1 0.0365831851959229 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721177 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_39775 0 0 1 5 39721177 39721198 mRNA hsa-miR-485-5p TOP1 miRanda miRanda
4064 chr20 39721177 39721177 1 + T G UCEC 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATGTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT < 41bp 1 0.0689234539420216 1 0.0365831851959229 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721177 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_39775 0 0 1 5 39721165 39721186 mRNA hsa-miR-491-5p TOP1 miRanda miRanda
4065 chr1 10332308 10332308 1 + A G UCEC 10332306 + 10332286 10332326 41 GTATTTATTTTAGGAAGGAGCAAATATTAATAAGTCTCTTA GTATTTATTTTAGGAAGGAGCAGATATTAATAAGTCTCTTA < 41bp 1 0.0605178372396724 1 0.376817852258682 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10332306 chr1:10332308 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_39870 0 0 1 2 10332299 10332309 mRNA hsa-miR-133a KIF1B miRanda miRanda
4066 chr1 10332308 10332308 1 + A G UCEC 10332306 + 10332286 10332326 41 GTATTTATTTTAGGAAGGAGCAAATATTAATAAGTCTCTTA GTATTTATTTTAGGAAGGAGCAGATATTAATAAGTCTCTTA < 41bp 1 0.0605178372396724 1 0.376817852258682 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10332306 chr1:10332308 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_39870 0 0 1 2 10332299 10332309 mRNA hsa-miR-133b KIF1B miRanda miRanda
4067 chr7 135312785 135312785 1 + C A UCEC 135312770 + 135312750 135312790 41 TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTCTCCTC TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTATCCTC < 41bp 1 0.454079274263536 1 0.129653722047806 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312770 chr7:135312785 nonsynonymous SNV 0.995 4 36 hm5C_associated_SNPs_39878 0 0 1 1 135312780 135312800 mRNA hsa-miR-485-5p NUP205 miRanda miRanda
4068 chr10 120867630 120867630 1 + T C UCEC 120867616 + 120867596 120867636 41 CCCTTTGTCTTTGGTCAGTACAGAAGAACATGGTTTTATAT CCCTTTGTCTTTGGTCAGTACAGAAGAACATGGTCTTATAT < 41bp 1 0.674608654515212 1 0.449964940547943 experiment 0.650782690969576 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM45A ENSG00000119979 CDS Human protein_coding chr10:120867616 chr10:120867630 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_39898 0 0 1 1 120867621 120867642 mRNA hsa-miR-758 FAM45A miRanda miRanda
4069 chr5 43173452 43173452 1 + G T UCEC 43173455 + 43173435 43173475 41 AATGTCCAAATTGTCATGAACGATTTGCTAGAAATAGCACT AATGTCCAAATTGTCATTAACGATTTGCTAGAAATAGCACT < 41bp 1 0.158295522847456 1 0.149490505456924 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43173455 chr5:43173452 stopgain 1.000 1 18 hm5C_associated_SNPs_39979 0 0 1 1 43173433 43173454 mRNA hsa-miR-433 ZNF131 miRanda miRanda
4070 chr10 115661458 115661458 1 + T C UCEC 115661457 + 115661437 115661477 41 AGGAACCTGCCTTAGGTTTGCTGGAAGTGGAAATGAAGAGA AGGAACCTGCCTTAGGTTTGCCGGAAGTGGAAATGAAGAGA < 41bp 1 0.634848362491766 1 0.56138813495636 experiment 0.730303275016468 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115661457 chr10:115661458 synonymous SNV . 0 22 hm5C_associated_SNPs_40004 0 0 1 1 115661440 115661461 mRNA hsa-miR-338-3p NHLRC2 miRanda miRanda
4071 chr10 94757350 94757350 1 + C T UCEC 94757363 + 94757343 94757383 41 AGTTTAACTTAGATGTCATACAGTGTGAATGTAAGTACTAT AGTTTAATTTAGATGTCATACAGTGTGAATGTAAGTACTAT < 41bp 1 0.244474460861608 1 0.129523396492004 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94757363 chr10:94757350 synonymous SNV . 0 8 hm5C_associated_SNPs_40046 0 0 1 1 94757349 94757370 mRNA hsa-miR-141 EXOC6 miRanda miRanda
4072 chr19 10886489 10886489 1 + C T UCEC 10886497 + 10886477 10886517 41 CAGTTCATCAGCCGGGAGAGCAGCCTCATTCTGGCTGTCAC CAGTTCATCAGCTGGGAGAGCAGCCTCATTCTGGCTGTCAC < 41bp 1 0.215418984123519 1 0.194492369890213 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886497 chr19:10886489 nonsynonymous SNV 0.998 5 13 hm5C_associated_SNPs_40062 0 0 1 1 10886477 10886504 mRNA hsa-miR-485-5p DNM2 miRanda miRanda
4073 chr2 113260548 113260548 1 + G A UCEC 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGCTTCAGACTGCTTCAGAACCATATCATGTTGATA < 41bp 1 0.409576084781862 1 0.465059250593185 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260548 nonsynonymous SNV 0.999 4 12 hm5C_associated_SNPs_40063 0 0 1 1 113260548 113260569 mRNA hsa-miR-190 TTL miRanda miRanda
4074 chr6 34213045 34213045 1 + C T UCEC 34213033 + 34213013 34213053 41 GGGCTTTTGGTTTGGGGGCGCCCTCTCTGCTCCTTCACTGT GGGCTTTTGGTTTGGGGGCGCCCTCTCTGCTCTTTCACTGT < 41bp 1 0.0901860658521138 1 0.0503885447978973 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HMGA1 ENSG00000137309 CDS Human protein_coding chr6:34213033 chr6:34213045 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_40119 0 0 1 1 34213024 34213046 mRNA hsa-miR-185 HMGA1 miRanda miRanda
4075 chr6 34213045 34213045 1 + C T UCEC 34213050 + 34213030 34213070 41 GCGCCCTCTCTGCTCCTTCACTGTTCCCTCTGGCTTCCCAT GCGCCCTCTCTGCTCTTTCACTGTTCCCTCTGGCTTCCCAT < 41bp 1 0.419861968137392 1 0.0167401731014252 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HMGA1 ENSG00000137309 CDS Human protein_coding chr6:34213050 chr6:34213045 nonsynonymous SNV . 0 16 hm5C_associated_SNPs_40120 0 0 1 1 34213024 34213046 mRNA hsa-miR-185 HMGA1 miRanda miRanda
4076 chr17 72306160 72306160 1 + G A UCEC 72306164 + 72306144 72306184 41 CCCCTTCAATAGGTGTGTGACGAGGCCCTCTTCTGCCTCCG CCCCTTCAATAGGTGTATGACGAGGCCCTCTTCTGCCTCCG < 41bp 1 0.799285541928947 1 0.868570327758789 experiment 0.401428916142107 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306164 chr17:72306160 nonsynonymous SNV 0.984 3 17 hm5C_associated_SNPs_40145 0 0 0 4 72306156 72306164 mRNA hsa-miR-197 DNAI2 miRanda miRanda
4077 chr17 72306160 72306160 1 + G A UCEC 72306164 + 72306144 72306184 41 CCCCTTCAATAGGTGTGTGACGAGGCCCTCTTCTGCCTCCG CCCCTTCAATAGGTGTATGACGAGGCCCTCTTCTGCCTCCG < 41bp 1 0.799285541928947 1 0.868570327758789 experiment 0.401428916142107 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306164 chr17:72306160 nonsynonymous SNV 0.984 3 17 hm5C_associated_SNPs_40145 0 0 0 4 72306156 72306162 mRNA hsa-miR-362-3p DNAI2 miRanda miRanda
4078 chr17 72306160 72306160 1 + G A UCEC 72306164 + 72306144 72306184 41 CCCCTTCAATAGGTGTGTGACGAGGCCCTCTTCTGCCTCCG CCCCTTCAATAGGTGTATGACGAGGCCCTCTTCTGCCTCCG < 41bp 1 0.799285541928947 1 0.868570327758789 experiment 0.401428916142107 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306164 chr17:72306160 nonsynonymous SNV 0.984 3 17 hm5C_associated_SNPs_40145 0 0 0 4 72306156 72306162 mRNA hsa-miR-329 DNAI2 miRanda miRanda
4079 chr17 72306160 72306160 1 + G A UCEC 72306164 + 72306144 72306184 41 CCCCTTCAATAGGTGTGTGACGAGGCCCTCTTCTGCCTCCG CCCCTTCAATAGGTGTATGACGAGGCCCTCTTCTGCCTCCG < 41bp 1 0.799285541928947 1 0.868570327758789 experiment 0.401428916142107 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306164 chr17:72306160 nonsynonymous SNV 0.984 3 17 hm5C_associated_SNPs_40145 0 0 0 4 72306156 72306165 mRNA hsa-miR-505 DNAI2 miRanda miRanda
4080 chr1 45973913 45973913 1 + T C UCEC 45973929 + 45973909 45973949 41 TCATTGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG TCATCGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG < 41bp 1 0.232254992048628 1 0.0528044402599335 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973929 chr1:45973913 synonymous SNV . 0 5 hm5C_associated_SNPs_40149 0 0 0 1 45973900 45973921 mRNA hsa-miR-424 MMACHC miRanda miRanda
4081 chr20 48568664 48568664 1 + A G UCEC 48568680 + 48568660 48568700 41 CTCCATCATCGACCAGTGAGCAGAGTCCGTGCTTGCTATCT CTCCGTCATCGACCAGTGAGCAGAGTCCGTGCTTGCTATCT < 41bp 1 0.671450001913245 1 0.37074202299118 experiment 0.65709999617351 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF114 ENSG00000124226 CDS Human protein_coding chr20:48568680 chr20:48568664 nonsynonymous SNV 0.996 0 5 hm5C_associated_SNPs_40153 0 0 1 1 48568650 48568672 mRNA hsa-miR-433 RNF114 miRanda miRanda
4082 chr1 227618491 227618491 1 + G T UCEC 227618502 + 227618482 227618522 41 CAGACAGAAGGATGTAAAGTCTGGAAAATACAGCCAGATCC CAGACAGAATGATGTAAAGTCTGGAAAATACAGCCAGATCC < 41bp 1 0.758594481231112 1 0.73602831363678 experiment 0.482811037537775 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC42BPA;ZNF678 ENSG00000234277;ENSG00000242757 ncRNA_exonic Human other chr1:227618502 chr1:227618491 . . 0 10 hm5C_associated_SNPs_40244 0 0 0 1 227618485 227618505 lncRNA hsa-miR-499b-5p LINC01641 miRanda starBase2
4083 chr1 70883646 70883646 1 + G A UCEC 70883650 + 70883630 70883670 41 TGCTTCAGGTTTAGCAGCCACTGTAACTATTACCCATCTTT TGCTTCAGGTTTAGCAACCACTGTAACTATTACCCATCTTT < 41bp 1 0.429426975785173 1 0.237915933132172 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTH ENSG00000116761 CDS Human protein_coding chr1:70883650 chr1:70883646 nonsynonymous SNV 0.802 4 17 hm5C_associated_SNPs_40311 0 0 1 1 70883635 70883655 mRNA hsa-miR-128 CTH miRanda miRanda
4084 chr20 47896922 47896922 1 + G A UCEC 47896909 + 47896889 47896929 41 GACAGATCGACTATGTTGATCTAACTTTTCTAAGCCAGTTT GACAGATCGACTATGTTGATCTAACTTTTCTAAACCAGTTT < 41bp 1 0.0899695107467835 1 0.122874319553375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896909 chr20:47896922 . . 0 34 hm5C_associated_SNPs_40319 0 0 1 7 47896905 47896927 mRNA hsa-miR-135a SNORD12B miRanda miRanda
4085 chr20 47896922 47896922 1 + G A UCEC 47896909 + 47896889 47896929 41 GACAGATCGACTATGTTGATCTAACTTTTCTAAGCCAGTTT GACAGATCGACTATGTTGATCTAACTTTTCTAAACCAGTTT < 41bp 1 0.0899695107467835 1 0.122874319553375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896909 chr20:47896922 . . 0 34 hm5C_associated_SNPs_40319 0 0 1 7 47896905 47896927 mRNA hsa-miR-149 SNORD12B miRanda miRanda
4086 chr20 47896922 47896922 1 + G A UCEC 47896909 + 47896889 47896929 41 GACAGATCGACTATGTTGATCTAACTTTTCTAAGCCAGTTT GACAGATCGACTATGTTGATCTAACTTTTCTAAACCAGTTT < 41bp 1 0.0899695107467835 1 0.122874319553375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896909 chr20:47896922 . . 0 34 hm5C_associated_SNPs_40319 0 0 1 7 47896907 47896928 mRNA hsa-miR-193a-3p SNORD12B miRanda miRanda
4087 chr20 47896922 47896922 1 + G A UCEC 47896909 + 47896889 47896929 41 GACAGATCGACTATGTTGATCTAACTTTTCTAAGCCAGTTT GACAGATCGACTATGTTGATCTAACTTTTCTAAACCAGTTT < 41bp 1 0.0899695107467835 1 0.122874319553375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896909 chr20:47896922 . . 0 34 hm5C_associated_SNPs_40319 0 0 1 7 47896919 47896940 mRNA hsa-miR-361-5p SNORD12B miRanda miRanda
4088 chr20 47896922 47896922 1 + G A UCEC 47896909 + 47896889 47896929 41 GACAGATCGACTATGTTGATCTAACTTTTCTAAGCCAGTTT GACAGATCGACTATGTTGATCTAACTTTTCTAAACCAGTTT < 41bp 1 0.0899695107467835 1 0.122874319553375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896909 chr20:47896922 . . 0 34 hm5C_associated_SNPs_40319 0 0 1 7 47896905 47896927 mRNA hsa-miR-135b SNORD12B miRanda miRanda
4089 chr20 47896922 47896922 1 + G A UCEC 47896909 + 47896889 47896929 41 GACAGATCGACTATGTTGATCTAACTTTTCTAAGCCAGTTT GACAGATCGACTATGTTGATCTAACTTTTCTAAACCAGTTT < 41bp 1 0.0899695107467835 1 0.122874319553375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896909 chr20:47896922 . . 0 34 hm5C_associated_SNPs_40319 0 0 1 7 47896907 47896928 mRNA hsa-miR-193b SNORD12B miRanda miRanda
4090 chr20 47896922 47896922 1 + G A UCEC 47896909 + 47896889 47896929 41 GACAGATCGACTATGTTGATCTAACTTTTCTAAGCCAGTTT GACAGATCGACTATGTTGATCTAACTTTTCTAAACCAGTTT < 41bp 1 0.0899695107467835 1 0.122874319553375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896909 chr20:47896922 . . 0 34 hm5C_associated_SNPs_40319 0 0 1 7 47896915 47896938 mRNA hsa-miR-421 SNORD12B miRanda miRanda
4091 chr20 47896922 47896922 1 + G A UCEC 47896942 + 47896922 47896962 41 GCCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG ACCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG < 41bp 1 0.230526082422532 1 0.0709923803806305 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896942 chr20:47896922 . . 0 1 hm5C_associated_SNPs_40320 0 0 1 7 47896905 47896927 mRNA hsa-miR-135a SNORD12B miRanda miRanda
4092 chr20 47896922 47896922 1 + G A UCEC 47896942 + 47896922 47896962 41 GCCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG ACCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG < 41bp 1 0.230526082422532 1 0.0709923803806305 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896942 chr20:47896922 . . 0 1 hm5C_associated_SNPs_40320 0 0 1 7 47896905 47896927 mRNA hsa-miR-149 SNORD12B miRanda miRanda
4093 chr20 47896922 47896922 1 + G A UCEC 47896942 + 47896922 47896962 41 GCCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG ACCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG < 41bp 1 0.230526082422532 1 0.0709923803806305 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896942 chr20:47896922 . . 0 1 hm5C_associated_SNPs_40320 0 0 1 7 47896907 47896928 mRNA hsa-miR-193a-3p SNORD12B miRanda miRanda
4094 chr20 47896922 47896922 1 + G A UCEC 47896942 + 47896922 47896962 41 GCCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG ACCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG < 41bp 1 0.230526082422532 1 0.0709923803806305 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896942 chr20:47896922 . . 0 1 hm5C_associated_SNPs_40320 0 0 1 7 47896919 47896940 mRNA hsa-miR-361-5p SNORD12B miRanda miRanda
4095 chr20 47896922 47896922 1 + G A UCEC 47896942 + 47896922 47896962 41 GCCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG ACCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG < 41bp 1 0.230526082422532 1 0.0709923803806305 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896942 chr20:47896922 . . 0 1 hm5C_associated_SNPs_40320 0 0 1 7 47896905 47896927 mRNA hsa-miR-135b SNORD12B miRanda miRanda
4096 chr20 47896922 47896922 1 + G A UCEC 47896942 + 47896922 47896962 41 GCCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG ACCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG < 41bp 1 0.230526082422532 1 0.0709923803806305 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896942 chr20:47896922 . . 0 1 hm5C_associated_SNPs_40320 0 0 1 7 47896907 47896928 mRNA hsa-miR-193b SNORD12B miRanda miRanda
4097 chr20 47896922 47896922 1 + G A UCEC 47896942 + 47896922 47896962 41 GCCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG ACCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG < 41bp 1 0.230526082422532 1 0.0709923803806305 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896942 chr20:47896922 . . 0 1 hm5C_associated_SNPs_40320 0 0 1 7 47896915 47896938 mRNA hsa-miR-421 SNORD12B miRanda miRanda
4098 chr11 65270050 65270050 1 + T C UCEC 65270066 + 65270046 65270086 41 AATGTCTCTTAGAGGGTGGGCTTTTGTTGATGAGGGAGGGG AATGCCTCTTAGAGGGTGGGCTTTTGTTGATGAGGGAGGGG < 41bp 1 0.0784110468276906 1 0.137608468532562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270066 chr11:65270050 . . 0 5 hm5C_associated_SNPs_40348 0 0 1 5 65270030 65270051 lncRNA hsa-miR-181a-5p MALAT1 miRanda starBase2
4099 chr11 65270050 65270050 1 + T C UCEC 65270066 + 65270046 65270086 41 AATGTCTCTTAGAGGGTGGGCTTTTGTTGATGAGGGAGGGG AATGCCTCTTAGAGGGTGGGCTTTTGTTGATGAGGGAGGGG < 41bp 1 0.0784110468276906 1 0.137608468532562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270066 chr11:65270050 . . 0 5 hm5C_associated_SNPs_40348 0 0 1 5 65270030 65270051 lncRNA hsa-miR-181b-5p MALAT1 miRanda starBase2
4100 chr11 65270050 65270050 1 + T C UCEC 65270066 + 65270046 65270086 41 AATGTCTCTTAGAGGGTGGGCTTTTGTTGATGAGGGAGGGG AATGCCTCTTAGAGGGTGGGCTTTTGTTGATGAGGGAGGGG < 41bp 1 0.0784110468276906 1 0.137608468532562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270066 chr11:65270050 . . 0 5 hm5C_associated_SNPs_40348 0 0 1 5 65270030 65270051 lncRNA hsa-miR-181c-5p MALAT1 miRanda starBase2
4101 chr11 65270050 65270050 1 + T C UCEC 65270066 + 65270046 65270086 41 AATGTCTCTTAGAGGGTGGGCTTTTGTTGATGAGGGAGGGG AATGCCTCTTAGAGGGTGGGCTTTTGTTGATGAGGGAGGGG < 41bp 1 0.0784110468276906 1 0.137608468532562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270066 chr11:65270050 . . 0 5 hm5C_associated_SNPs_40348 0 0 1 5 65270030 65270051 lncRNA hsa-miR-181d-5p MALAT1 miRanda starBase2
4102 chr11 65270050 65270050 1 + T C UCEC 65270066 + 65270046 65270086 41 AATGTCTCTTAGAGGGTGGGCTTTTGTTGATGAGGGAGGGG AATGCCTCTTAGAGGGTGGGCTTTTGTTGATGAGGGAGGGG < 41bp 1 0.0784110468276906 1 0.137608468532562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270066 chr11:65270050 . . 0 5 hm5C_associated_SNPs_40348 0 0 1 5 65270035 65270051 lncRNA hsa-miR-4262 MALAT1 miRanda starBase2
4103 chr11 65270889 65270889 1 + A C UCEC 65270875 + 65270855 65270895 41 TAGTACACTTCACTCAGAGGCATTTGCATCTTTAAATAATT TAGTACACTTCACTCAGAGGCATTTGCATCTTTACATAATT < 41bp 1 0.0449644657603513 1 0.167975783348083 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270875 chr11:65270889 . . 0 35 hm5C_associated_SNPs_40403 0 0 1 1 65270873 65270896 lncRNA hsa-miR-944 MALAT1 miRanda starBase2
4104 chr8 145166354 145166354 1 + C T UCEC 145166334 + 145166314 145166354 41 TGTCCCTGTTTGCAGCGAGGCCTTGTCTCTCATCCATCGTC TGTCCCTGTTTGCAGCGAGGCCTTGTCTCTCATCCATCGTT < 41bp 1 0.0196379258401963 1 0.0242067873477936 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166334 chr8:145166354 nonsynonymous SNV 0.000 1 41 hm5C_associated_SNPs_40428 0 0 1 1 145166345 145166367 mRNA hsa-miR-455-5p KIAA1875 miRanda miRanda
4105 chr8 145166354 145166354 1 + C T UCEC 145166335 + 145166315 145166355 41 GTCCCTGTTTGCAGCGAGGCCTTGTCTCTCATCCATCGTCG GTCCCTGTTTGCAGCGAGGCCTTGTCTCTCATCCATCGTTG < 41bp 1 0.189185872441953 1 0.0342593789100647 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166335 chr8:145166354 nonsynonymous SNV 0.000 1 40 hm5C_associated_SNPs_40429 0 0 1 1 145166345 145166367 mRNA hsa-miR-455-5p KIAA1875 miRanda miRanda
4106 chr8 145166354 145166354 1 + C T UCEC 145166367 + 145166347 145166387 41 CCATCGTCGGAGGGCAACATCTCAGCACCTGGTGCCGAAGG CCATCGTTGGAGGGCAACATCTCAGCACCTGGTGCCGAAGG < 41bp 1 0.494008231401671 1 0.486054748296738 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166367 chr8:145166354 nonsynonymous SNV 0.000 1 8 hm5C_associated_SNPs_40430 0 0 1 1 145166345 145166367 mRNA hsa-miR-455-5p KIAA1875 miRanda miRanda
4107 chr8 145166354 145166354 1 + C T UCEC 145166369 + 145166349 145166389 41 ATCGTCGGAGGGCAACATCTCAGCACCTGGTGCCGAAGGAG ATCGTTGGAGGGCAACATCTCAGCACCTGGTGCCGAAGGAG < 41bp 1 0.649559953258314 1 0.768209099769592 experiment 0.700880093483372 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166369 chr8:145166354 nonsynonymous SNV 0.000 1 6 hm5C_associated_SNPs_40431 0 0 1 1 145166345 145166367 mRNA hsa-miR-455-5p KIAA1875 miRanda miRanda
4108 chr11 66050512 66050512 1 + G A UCEC 66050523 + 66050503 66050543 41 CAGCTGGTGGTCCCAGAATACTCCATCCACGGCCTCTTCTG CAGCTGGTGATCCCAGAATACTCCATCCACGGCCTCTTCTG < 41bp 1 0.726864312063326 1 0.846625924110413 experiment 0.546271375873349 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CNIH2 ENSG00000174871 CDS Human protein_coding chr11:66050523 chr11:66050512 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_40441 0 0 0 1 66050506 66050526 mRNA hsa-miR-496 CNIH2 miRanda miRanda
4109 chr15 75190031 75190031 1 + C T UCEC 75190039 + 75190019 75190059 41 AGCTTACTGAGCCGAAGGACCTGCTGATATTCCGTGCCTGC AGCTTACTGAGCTGAAGGACCTGCTGATATTCCGTGCCTGC < 41bp 1 0.602907386196278 1 0.0920759439468384 experiment 0.794185227607445 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MPI ENSG00000178802 CDS Human protein_coding chr15:75190039 chr15:75190031 nonsynonymous SNV 0.369 1 13 hm5C_associated_SNPs_40442 0 0 1 2 75190012 75190032 mRNA hsa-miR-24 MPI miRanda miRanda
4110 chr15 75190031 75190031 1 + C T UCEC 75190039 + 75190019 75190059 41 AGCTTACTGAGCCGAAGGACCTGCTGATATTCCGTGCCTGC AGCTTACTGAGCTGAAGGACCTGCTGATATTCCGTGCCTGC < 41bp 1 0.602907386196278 1 0.0920759439468384 experiment 0.794185227607445 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MPI ENSG00000178802 CDS Human protein_coding chr15:75190039 chr15:75190031 nonsynonymous SNV 0.369 1 13 hm5C_associated_SNPs_40442 0 0 1 2 75190024 75190045 mRNA hsa-miR-214 MPI miRanda miRanda
4111 chr14 75190034 75190034 1 + C T UCEC 75190025 + 75190005 75190045 41 CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTA CTGAAATTGAGAAATTGGGGCAGAAGTATTGAGTGGCTCTA < 41bp 1 0.691330869318754 1 0.318928927183151 experiment 0.617338261362493 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190025 chr14:75190034 stopgain 0.996 1 30 hm5C_associated_SNPs_40486 0 0 1 1 75190034 75190047 mRNA hsa-miR-182 FCF1 miRanda miRanda
4112 chrX 73046500 73046500 1 - G A UCEC 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACTTGGGGAAATCCCAAGATGAGAACCCTAAAC < 41bp 1 0.601000578880284 1 0.49024111032486 experiment 0.797998842239431 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046500 . . 0 11 hm5C_associated_SNPs_40518 0 0 1 3 73046493 73046513 lncRNA hsa-miR-2355-5p XIST miRanda starBase2
4113 chrX 73046500 73046500 1 - G A UCEC 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACTTGGGGAAATCCCAAGATGAGAACCCTAAAC < 41bp 1 0.601000578880284 1 0.49024111032486 experiment 0.797998842239431 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046500 . . 0 11 hm5C_associated_SNPs_40518 0 0 1 3 73046488 73046509 lncRNA hsa-miR-3167 XIST miRanda starBase2
4114 chrX 73046500 73046500 1 - G A UCEC 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACTTGGGGAAATCCCAAGATGAGAACCCTAAAC < 41bp 1 0.601000578880284 1 0.49024111032486 experiment 0.797998842239431 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046500 . . 0 11 hm5C_associated_SNPs_40518 0 0 1 3 73046488 73046509 lncRNA hsa-miR-876-5p XIST miRanda starBase2
4115 chr2 27280284 27280284 1 + A G UCEC 27280287 + 27280267 27280307 41 GGCTTTCCCCTCCAGATACACTGTGGAACTATTTGAGCAGG GGCTTTCCCCTCCAGATGCACTGTGGAACTATTTGAGCAGG < 41bp 1 0.458769878316777 1 0.286044180393219 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27280287 chr2:27280284 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_40571 0 0 1 1 27280272 27280292 mRNA hsa-miR-128 AGBL5 miRanda miRanda
4116 chr4 1332372 1332372 1 + G A UCEC 1332384 + 1332364 1332404 41 CCGCCCATGATGCTGCCCAACGGCTACGTCTACGGCTACAA CCGCCCATAATGCTGCCCAACGGCTACGTCTACGGCTACAA < 41bp 1 0.551527424783228 1 0.355048000812531 experiment 0.896945150433545 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAEA ENSG00000090316 CDS Human protein_coding chr4:1332384 chr4:1332372 nonsynonymous SNV 0.999 4 9 hm5C_associated_SNPs_40577 0 0 1 3 1332361 1332380 mRNA hsa-miR-103 MAEA miRanda miRanda
4117 chr4 1332372 1332372 1 + G A UCEC 1332384 + 1332364 1332404 41 CCGCCCATGATGCTGCCCAACGGCTACGTCTACGGCTACAA CCGCCCATAATGCTGCCCAACGGCTACGTCTACGGCTACAA < 41bp 1 0.551527424783228 1 0.355048000812531 experiment 0.896945150433545 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAEA ENSG00000090316 CDS Human protein_coding chr4:1332384 chr4:1332372 nonsynonymous SNV 0.999 4 9 hm5C_associated_SNPs_40577 0 0 1 3 1332361 1332380 mRNA hsa-miR-107 MAEA miRanda miRanda
4118 chr4 1332372 1332372 1 + G A UCEC 1332384 + 1332364 1332404 41 CCGCCCATGATGCTGCCCAACGGCTACGTCTACGGCTACAA CCGCCCATAATGCTGCCCAACGGCTACGTCTACGGCTACAA < 41bp 1 0.551527424783228 1 0.355048000812531 experiment 0.896945150433545 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAEA ENSG00000090316 CDS Human protein_coding chr4:1332384 chr4:1332372 nonsynonymous SNV 0.999 4 9 hm5C_associated_SNPs_40577 0 0 1 3 1332367 1332392 mRNA hsa-miR-126 MAEA miRanda miRanda
4119 chr18 13096262 13096262 1 + G A UCEC 13096273 + 13096253 13096293 41 CTGGCCAGCGCATTGCCTCACAGTCACGCCGCAGCATGGAT CTGGCCAGCACATTGCCTCACAGTCACGCCGCAGCATGGAT < 41bp 1 0.0900927207829036 1 0.0883151590824127 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13096273 chr18:13096262 synonymous SNV . 0 10 hm5C_associated_SNPs_40584 0 0 1 1 13096260 13096280 mRNA hsa-miR-134 CEP192 miRanda miRanda
4120 chr17 29683571 29683571 1 + G A UCEC 29683551 + 29683531 29683571 41 CAAGAAATGGAATCAGGGATCACAACACCCCCCAAAATGAG CAAGAAATGGAATCAGGGATCACAACACCCCCCAAAATGAA < 41bp 1 0.262555249085134 1 0.412216782569885 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29683551 chr17:29683571 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_40634 0 0 1 1 29683563 29683585 mRNA hsa-miR-544 NF1 miRanda miRanda
4121 chr17 76399727 76399727 1 + T C UCEC 76399746 + 76399726 76399766 41 ATGCTGCATGCCCAGACCTTCCACAGCAACTCTCTTTTGAC ACGCTGCATGCCCAGACCTTCCACAGCAACTCTCTTTTGAC < 41bp 1 0.366904774928759 1 0.111531227827072 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PGS1 ENSG00000087157 CDS Human protein_coding chr17:76399746 chr17:76399727 nonsynonymous SNV 0.808 0 2 hm5C_associated_SNPs_40665 0 0 1 2 76399712 76399733 mRNA hsa-miR-103 PGS1 miRanda miRanda
4122 chr17 76399727 76399727 1 + T C UCEC 76399746 + 76399726 76399766 41 ATGCTGCATGCCCAGACCTTCCACAGCAACTCTCTTTTGAC ACGCTGCATGCCCAGACCTTCCACAGCAACTCTCTTTTGAC < 41bp 1 0.366904774928759 1 0.111531227827072 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PGS1 ENSG00000087157 CDS Human protein_coding chr17:76399746 chr17:76399727 nonsynonymous SNV 0.808 0 2 hm5C_associated_SNPs_40665 0 0 1 2 76399712 76399733 mRNA hsa-miR-107 PGS1 miRanda miRanda
4123 chr11 837585 837585 1 + G A UCEC 837583 + 837563 837603 41 CGGTGGTGGCTCTTTGTGGGCAGCGAGACCATGCCTCCAAC CGGTGGTGGCTCTTTGTGGGCAACGAGACCATGCCTCCAAC < 41bp 1 0.661177069972808 1 0.172374874353409 experiment 0.677645860054383 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD151 ENSG00000177697 CDS Human protein_coding chr11:837583 chr11:837585 synonymous SNV . 0 23 hm5C_associated_SNPs_40669 0 0 1 1 837578 837600 mRNA hsa-miR-485-5p CD151 miRanda miRanda
4124 chr2 70122274 70122274 1 + G A UCEC 70122272 + 70122252 70122292 41 CGGGAGAGAGAACGCAGGCGCCGAGAAAGGTCCAGGTCTCG CGGGAGAGAGAACGCAGGCGCCAAGAAAGGTCCAGGTCTCG < 41bp 1 0.646158210479685 1 0.442948430776596 experiment 0.707683579040629 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122272 chr2:70122274 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_40738 0 0 1 1 70122272 70122294 mRNA hsa-miR-615-3p SNRNP27 miRanda miRanda
4125 chr10 89487100 89487100 1 + C T UCEC 89487114 + 89487094 89487134 41 AAGACACGGCTGGAAGGGTGCAGCAAGTTTGTCCTGGCACA AAGACATGGCTGGAAGGGTGCAGCAAGTTTGTCCTGGCACA < 41bp 1 0.77420585611858 1 0.457822531461716 experiment 0.45158828776284 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89487114 chr10:89487100 nonsynonymous SNV 0.904 3 7 hm5C_associated_SNPs_40852 0 0 0 1 89487079 89487102 mRNA hsa-miR-187 PAPSS2 miRanda miRanda
4126 chr20 39986973 39986973 1 + C A UCEC 39986960 + 39986940 39986980 41 GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGA GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCATTTGGGA < 41bp 1 0.0107287804019931 1 0.111655384302139 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986960 chr20:39986973 synonymous SNV . 0 34 hm5C_associated_SNPs_40940 0 0 1 2 39986953 39986973 mRNA hsa-miR-103 LPIN3 miRanda miRanda
4127 chr20 39986973 39986973 1 + C A UCEC 39986960 + 39986940 39986980 41 GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGA GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCATTTGGGA < 41bp 1 0.0107287804019931 1 0.111655384302139 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986960 chr20:39986973 synonymous SNV . 0 34 hm5C_associated_SNPs_40940 0 0 1 2 39986953 39986973 mRNA hsa-miR-107 LPIN3 miRanda miRanda
4128 chr3 20019895 20019895 1 + G T UCEC 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATGGCAATATGTAAGATTAATATCT < 41bp 1 0.19202739461668 1 0.161749422550201 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019895 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_41052 0 0 0 4 20019889 20019895 mRNA hsa-miR-96 RAB5A miRanda miRanda
4129 chr3 20019895 20019895 1 + G T UCEC 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATGGCAATATGTAAGATTAATATCT < 41bp 1 0.19202739461668 1 0.161749422550201 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019895 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_41052 0 0 0 4 20019888 20019895 mRNA hsa-miR-182 RAB5A miRanda miRanda
4130 chr3 20019895 20019895 1 + G T UCEC 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATGGCAATATGTAAGATTAATATCT < 41bp 1 0.19202739461668 1 0.161749422550201 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019895 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_41052 0 0 0 4 20019888 20019895 mRNA hsa-miR-9 RAB5A miRanda miRanda
4131 chr3 20019895 20019895 1 + G T UCEC 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATGGCAATATGTAAGATTAATATCT < 41bp 1 0.19202739461668 1 0.161749422550201 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019895 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_41052 0 0 0 4 20019890 20019895 mRNA hsa-miR-1271 RAB5A miRanda miRanda
4132 chr3 160122152 160122152 1 + T G UCEC 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATGATTATGAAGTCATTCCTAACAGTAATGTCTATGTAT < 41bp 1 0.10881399030218 1 0.0322751998901367 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122152 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_41105 0 0 1 3 160122140 160122160 mRNA hsa-miR-376c SMC4 miRanda miRanda
4133 chr3 160122152 160122152 1 + T G UCEC 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATGATTATGAAGTCATTCCTAACAGTAATGTCTATGTAT < 41bp 1 0.10881399030218 1 0.0322751998901367 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122152 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_41105 0 0 1 3 160122140 160122160 mRNA hsa-miR-376a SMC4 miRanda miRanda
4134 chr3 160122152 160122152 1 + T G UCEC 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATGATTATGAAGTCATTCCTAACAGTAATGTCTATGTAT < 41bp 1 0.10881399030218 1 0.0322751998901367 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122152 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_41105 0 0 1 3 160122139 160122160 mRNA hsa-miR-376b SMC4 miRanda miRanda
4135 chr3 160122152 160122152 1 + T G UCEC 160122171 + 160122151 160122191 41 TTTCTATGTATCCAGAACGGCCTGCAGAGATAATACTTCTG TGTCTATGTATCCAGAACGGCCTGCAGAGATAATACTTCTG < 41bp 1 0.0348665170782254 1 0.0605757534503937 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122171 chr3:160122152 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_41106 0 0 1 3 160122140 160122160 mRNA hsa-miR-376c SMC4 miRanda miRanda
4136 chr3 160122152 160122152 1 + T G UCEC 160122171 + 160122151 160122191 41 TTTCTATGTATCCAGAACGGCCTGCAGAGATAATACTTCTG TGTCTATGTATCCAGAACGGCCTGCAGAGATAATACTTCTG < 41bp 1 0.0348665170782254 1 0.0605757534503937 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122171 chr3:160122152 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_41106 0 0 1 3 160122140 160122160 mRNA hsa-miR-376a SMC4 miRanda miRanda
4137 chr3 160122152 160122152 1 + T G UCEC 160122171 + 160122151 160122191 41 TTTCTATGTATCCAGAACGGCCTGCAGAGATAATACTTCTG TGTCTATGTATCCAGAACGGCCTGCAGAGATAATACTTCTG < 41bp 1 0.0348665170782254 1 0.0605757534503937 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122171 chr3:160122152 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_41106 0 0 1 3 160122139 160122160 mRNA hsa-miR-376b SMC4 miRanda miRanda
4138 chr9 134064467 134064467 1 + T G UCEC 134064468 + 134064448 134064488 41 AATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCCG AATAAATTCCCTTAAGCCAGCTGGGCCTACACCAGCATCCG < 41bp 1 0.437443530612693 1 0.482708841562271 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134064468 chr9:134064467 nonsynonymous SNV 0.921 0 20 hm5C_associated_SNPs_41142 0 0 1 3 134064446 134064468 mRNA hsa-miR-135a NUP214 miRanda miRanda
4139 chr9 134064467 134064467 1 + T G UCEC 134064468 + 134064448 134064488 41 AATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCCG AATAAATTCCCTTAAGCCAGCTGGGCCTACACCAGCATCCG < 41bp 1 0.437443530612693 1 0.482708841562271 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134064468 chr9:134064467 nonsynonymous SNV 0.921 0 20 hm5C_associated_SNPs_41142 0 0 1 3 134064464 134064484 mRNA hsa-miR-138 NUP214 miRanda miRanda
4140 chr9 134064467 134064467 1 + T G UCEC 134064468 + 134064448 134064488 41 AATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCCG AATAAATTCCCTTAAGCCAGCTGGGCCTACACCAGCATCCG < 41bp 1 0.437443530612693 1 0.482708841562271 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134064468 chr9:134064467 nonsynonymous SNV 0.921 0 20 hm5C_associated_SNPs_41142 0 0 1 3 134064446 134064468 mRNA hsa-miR-135b NUP214 miRanda miRanda
4141 chr3 129197039 129197039 1 + C T UCEC 129197026 + 129197006 129197046 41 AGAAGTTTGAGTGCAACCTCCTGGTGGTGTGTGCCAATCAC AGAAGTTTGAGTGCAACCTCCTGGTGGTGTGTGTCAATCAC < 41bp 1 0.679818197111644 1 0.22866553068161 experiment 0.640363605776713 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT122 ENSG00000163913 CDS Human protein_coding chr3:129197026 chr3:129197039 nonsynonymous SNV 0.510 2 34 hm5C_associated_SNPs_41178 0 0 1 4 129197020 129197043 mRNA hsa-miR-96 IFT122 miRanda miRanda
4142 chr3 129197039 129197039 1 + C T UCEC 129197026 + 129197006 129197046 41 AGAAGTTTGAGTGCAACCTCCTGGTGGTGTGTGCCAATCAC AGAAGTTTGAGTGCAACCTCCTGGTGGTGTGTGTCAATCAC < 41bp 1 0.679818197111644 1 0.22866553068161 experiment 0.640363605776713 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT122 ENSG00000163913 CDS Human protein_coding chr3:129197026 chr3:129197039 nonsynonymous SNV 0.510 2 34 hm5C_associated_SNPs_41178 0 0 1 4 129197034 129197056 mRNA hsa-miR-125a-3p IFT122 miRanda miRanda
4143 chr3 129197039 129197039 1 + C T UCEC 129197026 + 129197006 129197046 41 AGAAGTTTGAGTGCAACCTCCTGGTGGTGTGTGCCAATCAC AGAAGTTTGAGTGCAACCTCCTGGTGGTGTGTGTCAATCAC < 41bp 1 0.679818197111644 1 0.22866553068161 experiment 0.640363605776713 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT122 ENSG00000163913 CDS Human protein_coding chr3:129197026 chr3:129197039 nonsynonymous SNV 0.510 2 34 hm5C_associated_SNPs_41178 0 0 1 4 129197021 129197044 mRNA hsa-miR-92b IFT122 miRanda miRanda
4144 chr3 129197039 129197039 1 + C T UCEC 129197026 + 129197006 129197046 41 AGAAGTTTGAGTGCAACCTCCTGGTGGTGTGTGCCAATCAC AGAAGTTTGAGTGCAACCTCCTGGTGGTGTGTGTCAATCAC < 41bp 1 0.679818197111644 1 0.22866553068161 experiment 0.640363605776713 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT122 ENSG00000163913 CDS Human protein_coding chr3:129197026 chr3:129197039 nonsynonymous SNV 0.510 2 34 hm5C_associated_SNPs_41178 0 0 1 4 129197022 129197043 mRNA hsa-miR-1271 IFT122 miRanda miRanda
4145 chr10 120867621 120867621 1 + G A UCEC 120867616 + 120867596 120867636 41 CCCTTTGTCTTTGGTCAGTACAGAAGAACATGGTTTTATAT CCCTTTGTCTTTGGTCAGTACAGAAAAACATGGTTTTATAT < 41bp 1 0.601147920436092 1 0.434351027011871 experiment 0.797704159127816 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM45A ENSG00000119979 CDS Human protein_coding chr10:120867616 chr10:120867621 nonsynonymous SNV 0.999 1 26 hm5C_associated_SNPs_41225 0 0 0 1 120867621 120867642 mRNA hsa-miR-758 FAM45A miRanda miRanda
4146 chr17 16344593 16344593 1 + G A UCEC 16344577 + 16344557 16344597 41 AAAATAGCTGGAATTACCGGCAGATTGTGTAGTGGTGAACC AAAATAGCTGGAATTACCGGCAGATTGTGTAGTGGTAAACC < 41bp 1 0.106967240400266 1 0.157600909471512 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD65 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16344577 chr17:16344593 . . 0 37 hm5C_associated_SNPs_41287 0 0 1 1 16344575 16344595 mRNA hsa-miR-197 SNORD65 miRanda miRanda
4147 chr17 16344593 16344593 1 + G A UCEC 16344596 + 16344576 16344616 41 GCAGATTGTGTAGTGGTGAACCTATGGTTTTCTGAAGATAT GCAGATTGTGTAGTGGTAAACCTATGGTTTTCTGAAGATAT < 41bp 1 0.0674834314831908 1 0.103003859519958 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD65 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16344596 chr17:16344593 . . 0 18 hm5C_associated_SNPs_41288 0 0 1 1 16344575 16344595 mRNA hsa-miR-197 SNORD65 miRanda miRanda
4148 chr4 15589548 15589548 1 + C A UCEC 15589537 + 15589517 15589557 41 AAGGCCTGGCTGTTGATGGGCAATGCTATTCCTGAGGTAAG AAGGCCTGGCTGTTGATGGGCAATGCTATTCATGAGGTAAG < 41bp 1 0.124567773127149 1 0.127511203289032 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15589537 chr4:15589548 nonsynonymous SNV 0.997 4 32 hm5C_associated_SNPs_41323 0 0 0 2 15589543 15589552 mRNA hsa-miR-449a CC2D2A miRanda miRanda
4149 chr4 15589548 15589548 1 + C A UCEC 15589537 + 15589517 15589557 41 AAGGCCTGGCTGTTGATGGGCAATGCTATTCCTGAGGTAAG AAGGCCTGGCTGTTGATGGGCAATGCTATTCATGAGGTAAG < 41bp 1 0.124567773127149 1 0.127511203289032 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15589537 chr4:15589548 nonsynonymous SNV 0.997 4 32 hm5C_associated_SNPs_41323 0 0 0 2 15589543 15589552 mRNA hsa-miR-449b CC2D2A miRanda miRanda
4150 chr13 52604988 52604988 1 + T C UCEC 52604970 + 52604950 52604990 41 GAAGCGCAACATCCACGCAGCAGCTCATCAGGTACAAGTGC GAAGCGCAACATCCACGCAGCAGCTCATCAGGTACAAGCGC < 41bp 1 0.182568703847924 1 0.0965416133403778 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP14C ENSG00000253797 CDS Human protein_coding chr13:52604970 chr13:52604988 nonsynonymous SNV 0.182 0 39 hm5C_associated_SNPs_41325 0 0 1 1 52604973 52604995 mRNA hsa-miR-7 ALG11 miRanda miRanda
4151 chr17 38152550 38152550 1 + C T UCEC 38152535 + 38152515 38152555 41 ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGTGCATC < 41bp 1 0.301626372223051 1 0.250767350196838 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38152535 chr17:38152550 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_41370 0 0 1 1 38152529 38152551 mRNA hsa-miR-138 PSMD3 miRanda miRanda
4152 chr17 55191847 55191847 1 + G A UCEC 55191830 + 55191810 55191850 41 CCCTCTACAGCTCATGCTGCCTGATGGCATCACCGTGGAGG CCCTCTACAGCTCATGCTGCCTGATGGCATCACCGTGAAGG < 41bp 1 0.255374359786748 1 0.0868304967880249 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55191830 chr17:55191847 nonsynonymous SNV 0.999 4 38 hm5C_associated_SNPs_41407 0 0 1 1 55191824 55191847 mRNA hsa-miR-125a-3p AKAP1 miRanda miRanda
4153 chr14 23240646 23240646 1 + C A UCEC 23240645 + 23240625 23240665 41 TTTCTCTTCTCCCCTCAGGTCCTTTACGACAGACCTTTACC TTTCTCTTCTCCCCTCAGGTCATTTACGACAGACCTTTACC < 41bp 1 0.0388017694770571 1 0.104668080806732 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240645 chr14:23240646 nonsynonymous SNV 0.866 4 22 hm5C_associated_SNPs_41478 0 0 1 1 23240643 23240646 mRNA hsa-miR-504 OXA1L miRanda miRanda
4154 chr7 135312781 135312781 1 + G T UCEC 135312770 + 135312750 135312790 41 TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTCTCCTC TCATCCCTACCCCAGTGGATCGCTACCGCCATATTCTCCTC < 41bp 1 0.517873027044991 1 0.112628638744354 experiment 0.964253945910018 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312770 chr7:135312781 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_41501 0 0 1 1 135312780 135312800 mRNA hsa-miR-485-5p NUP205 miRanda miRanda
4155 chr2 202141596 202141596 1 + G A UCEC 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTCGGGGATACTATCTGATCATCAACAATCA < 41bp 1 0.197487107734519 1 0.22907418012619 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141596 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_41547 0 0 1 1 202141583 202141604 mRNA hsa-miR-383 CASP8 miRanda miRanda
4156 chr19 42814476 42814476 1 + C A UCEC 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCACTGATCAAGTCCCAGAGCA < 41bp 1 0.371266800159786 1 0.273140966892242 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814476 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_41567 0 0 0 4 42814473 42814492 mRNA hsa-miR-378 PRR19 miRanda miRanda
4157 chr19 42814476 42814476 1 + C A UCEC 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCACTGATCAAGTCCCAGAGCA < 41bp 1 0.371266800159786 1 0.273140966892242 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814476 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_41567 0 0 0 4 42814473 42814494 mRNA hsa-miR-330-5p PRR19 miRanda miRanda
4158 chr19 42814476 42814476 1 + C A UCEC 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCACTGATCAAGTCCCAGAGCA < 41bp 1 0.371266800159786 1 0.273140966892242 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814476 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_41567 0 0 0 4 42814476 42814494 mRNA hsa-miR-326 PRR19 miRanda miRanda
4159 chr19 42814476 42814476 1 + C A UCEC 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCACTGATCAAGTCCCAGAGCA < 41bp 1 0.371266800159786 1 0.273140966892242 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814476 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_41567 0 0 0 4 42814472 42814492 mRNA hsa-miR-422a PRR19 miRanda miRanda
4160 chr12 57909064 57909064 1 + G T UCEC 57909051 + 57909031 57909071 41 AGGCCCAGCTGCAGCTCCCACCTCCAGCCTGCAGTATCCTG AGGCCCAGCTGCAGCTCCCACCTCCAGCCTGCATTATCCTG < 41bp 1 0.0585198460811178 1 0.0662634670734406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57909051 chr12:57909064 nonsynonymous SNV 0.827 0 34 hm5C_associated_SNPs_41592 0 0 1 2 57909054 57909075 mRNA hsa-miR-214 MARS miRanda miRanda
4161 chr12 57909064 57909064 1 + G T UCEC 57909051 + 57909031 57909071 41 AGGCCCAGCTGCAGCTCCCACCTCCAGCCTGCAGTATCCTG AGGCCCAGCTGCAGCTCCCACCTCCAGCCTGCATTATCCTG < 41bp 1 0.0585198460811178 1 0.0662634670734406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57909051 chr12:57909064 nonsynonymous SNV 0.827 0 34 hm5C_associated_SNPs_41592 0 0 1 2 57909061 57909083 mRNA hsa-miR-382 MARS miRanda miRanda
4162 chr12 72094663 72094663 1 + G T UCEC 72094681 + 72094661 72094701 41 AAGGCACATAGCAGGGAAACCCATTCTTGATAACAACGCAG AATGCACATAGCAGGGAAACCCATTCTTGATAACAACGCAG < 41bp 1 0.10789714758814 1 0.118577867746353 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMEM19 ENSG00000139291 CDS Human protein_coding chr12:72094681 chr12:72094663 nonsynonymous SNV 0.573 1 3 hm5C_associated_SNPs_41639 0 0 0 1 72094649 72094670 mRNA hsa-miR-455-5p TMEM19 miRanda miRanda
4163 chr11 85977211 85977211 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATTAA < 41bp 1 0.161884874173062 1 0.116541057825089 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977211 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_41642 0 0 1 13 85977199 85977220 mRNA hsa-miR-25 EED miRanda miRanda
4164 chr11 85977211 85977211 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATTAA < 41bp 1 0.161884874173062 1 0.116541057825089 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977211 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_41642 0 0 1 13 85977199 85977220 mRNA hsa-miR-32 EED miRanda miRanda
4165 chr11 85977211 85977211 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATTAA < 41bp 1 0.161884874173062 1 0.116541057825089 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977211 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_41642 0 0 1 13 85977198 85977218 mRNA hsa-miR-33a EED miRanda miRanda
4166 chr11 85977211 85977211 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATTAA < 41bp 1 0.161884874173062 1 0.116541057825089 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977211 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_41642 0 0 1 13 85977199 85977220 mRNA hsa-miR-92a EED miRanda miRanda
4167 chr11 85977211 85977211 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATTAA < 41bp 1 0.161884874173062 1 0.116541057825089 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977211 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_41642 0 0 1 13 85977195 85977217 mRNA hsa-miR-181a EED miRanda miRanda
4168 chr11 85977211 85977211 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATTAA < 41bp 1 0.161884874173062 1 0.116541057825089 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977211 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_41642 0 0 1 13 85977195 85977217 mRNA hsa-miR-181b EED miRanda miRanda
4169 chr11 85977211 85977211 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATTAA < 41bp 1 0.161884874173062 1 0.116541057825089 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977211 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_41642 0 0 1 13 85977195 85977217 mRNA hsa-miR-181c EED miRanda miRanda
4170 chr11 85977211 85977211 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATTAA < 41bp 1 0.161884874173062 1 0.116541057825089 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977211 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_41642 0 0 1 13 85977204 85977225 mRNA hsa-miR-205 EED miRanda miRanda
4171 chr11 85977211 85977211 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATTAA < 41bp 1 0.161884874173062 1 0.116541057825089 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977211 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_41642 0 0 1 13 85977200 85977220 mRNA hsa-miR-363 EED miRanda miRanda
4172 chr11 85977211 85977211 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATTAA < 41bp 1 0.161884874173062 1 0.116541057825089 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977211 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_41642 0 0 1 13 85977199 85977220 mRNA hsa-miR-367 EED miRanda miRanda
4173 chr11 85977211 85977211 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATTAA < 41bp 1 0.161884874173062 1 0.116541057825089 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977211 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_41642 0 0 1 13 85977195 85977217 mRNA hsa-miR-181d EED miRanda miRanda
4174 chr11 85977211 85977211 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATTAA < 41bp 1 0.161884874173062 1 0.116541057825089 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977211 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_41642 0 0 1 13 85977199 85977220 mRNA hsa-miR-92b EED miRanda miRanda
4175 chr11 85977211 85977211 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATTAA < 41bp 1 0.161884874173062 1 0.116541057825089 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977211 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_41642 0 0 1 13 85977199 85977218 mRNA hsa-miR-33b EED miRanda miRanda
4176 chr3 39110340 39110340 1 + C T UCEC 39110322 + 39110302 39110342 41 GGCCATGAATCAACTGGGAACAATCATTGTATCAGGGTCCA GGCCATGAATCAACTGGGAACAATCATTGTATCAGGGTTCA < 41bp 1 0.0825478587892778 1 0.365059673786163 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39110322 chr3:39110340 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_41656 0 0 0 1 39110320 39110341 mRNA hsa-miR-504 WDR48 miRanda miRanda
4177 chr3 39110340 39110340 1 + C T UCEC 39110326 + 39110306 39110346 41 ATGAATCAACTGGGAACAATCATTGTATCAGGGTCCACTGA ATGAATCAACTGGGAACAATCATTGTATCAGGGTTCACTGA < 41bp 1 0.291352105998913 1 0.250509262084961 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39110326 chr3:39110340 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_41657 0 0 0 1 39110320 39110341 mRNA hsa-miR-504 WDR48 miRanda miRanda
4178 chr2 113260562 113260562 1 + C A UCEC 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGCTTCGGACTGCTTCAGAAACATATCATGTTGATA < 41bp 1 0.529682514064647 1 0.500202476978302 experiment 0.940634971870706 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260562 nonsynonymous SNV 0.996 2 26 hm5C_associated_SNPs_41664 0 0 1 5 113260548 113260569 mRNA hsa-miR-190 TTL miRanda miRanda
4179 chr2 113260562 113260562 1 + C A UCEC 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGCTTCGGACTGCTTCAGAAACATATCATGTTGATA < 41bp 1 0.529682514064647 1 0.500202476978302 experiment 0.940634971870706 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260562 nonsynonymous SNV 0.996 2 26 hm5C_associated_SNPs_41664 0 0 1 5 113260552 113260573 mRNA hsa-miR-433 TTL miRanda miRanda
4180 chr2 113260562 113260562 1 + C A UCEC 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGCTTCGGACTGCTTCAGAAACATATCATGTTGATA < 41bp 1 0.529682514064647 1 0.500202476978302 experiment 0.940634971870706 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260562 nonsynonymous SNV 0.996 2 26 hm5C_associated_SNPs_41664 0 0 1 5 113260556 113260577 mRNA hsa-miR-505 TTL miRanda miRanda
4181 chr2 113260562 113260562 1 + C A UCEC 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGCTTCGGACTGCTTCAGAAACATATCATGTTGATA < 41bp 1 0.529682514064647 1 0.500202476978302 experiment 0.940634971870706 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260562 nonsynonymous SNV 0.996 2 26 hm5C_associated_SNPs_41664 0 0 1 5 113260554 113260576 mRNA hsa-miR-421 TTL miRanda miRanda
4182 chr2 113260562 113260562 1 + C A UCEC 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGCTTCGGACTGCTTCAGAAACATATCATGTTGATA < 41bp 1 0.529682514064647 1 0.500202476978302 experiment 0.940634971870706 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260562 nonsynonymous SNV 0.996 2 26 hm5C_associated_SNPs_41664 0 0 1 5 113260549 113260569 mRNA hsa-miR-190b TTL miRanda miRanda
4183 chr20 279029 279029 1 + G T UCEC 279018 + 278998 279038 41 CATCCTCTTCCGGAACGAGACGGTGGACGTGGAGGACATTG CATCCTCTTCCGGAACGAGACGGTGGACGTGTAGGACATTG < 41bp 1 0.595190065661058 1 0.475616842508316 experiment 0.809619868677883 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZCCHC3 ENSG00000177764 CDS Human other chr20:279018 chr20:279029 stopgain 1.000 0 32 hm5C_associated_SNPs_41681 0 0 1 1 279025 279045 mRNA hsa-miR-224 ZCCHC3 miRanda miRanda
4184 chr12 6879138 6879138 1 + G T UCEC 6879124 + 6879104 6879144 41 TGAGGAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGG TGAGGAGGAAGAAGAAGAAACTGCCGAGGATGGATAGGAGG < 41bp 1 0.380178888483959 1 0.27869039773941 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6879124 chr12:6879138 stopgain 1.000 0 35 hm5C_associated_SNPs_41763 0 0 1 1 6879132 6879155 mRNA hsa-miR-205 PTMS miRanda miRanda
4185 chr12 6879138 6879138 1 + G T UCEC 6879127 + 6879107 6879147 41 GGAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAG GGAGGAAGAAGAAGAAACTGCCGAGGATGGATAGGAGGAAG < 41bp 1 0.401487255442093 1 0.670178651809692 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMS ENSG00000159335 CDS Human protein_coding chr12:6879127 chr12:6879138 stopgain 1.000 0 32 hm5C_associated_SNPs_41764 0 0 1 1 6879132 6879155 mRNA hsa-miR-205 PTMS miRanda miRanda
4186 chr12 6879138 6879138 1 + G T UCEC 6879128 + 6879108 6879148 41 GAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAGA GAGGAAGAAGAAGAAACTGCCGAGGATGGATAGGAGGAAGA < 41bp 1 0.685873531600067 1 0.794931769371033 experiment 0.628252936799867 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6879128 chr12:6879138 stopgain 1.000 0 31 hm5C_associated_SNPs_41765 0 0 1 1 6879132 6879155 mRNA hsa-miR-205 PTMS miRanda miRanda
4187 chrX 48759675 48759675 1 + G A UCEC 48759667 + 48759647 48759687 41 CGTGGCTATGACAAGGTAGACAGAGAGAGAGAGCGAGACAG CGTGGCTATGACAAGGTAGACAGAGAGAAAGAGCGAGACAG < 41bp 1 0.790380826075757 1 0.683687210083008 experiment 0.419238347848487 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759667 chrX:48759675 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_41793 0 0 1 1 48759669 48759690 mRNA hsa-miR-339-5p PQBP1 miRanda miRanda
4188 chr15 25220519 25220519 1 + T C UCEC 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAGCAGCAAGATGCTGCAGCACATTGACTATAGA < 41bp 1 0.62311176284472 1 0.552311778068542 experiment 0.75377647431056 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220519 synonymous SNV . 0 11 hm5C_associated_SNPs_41810 0 0 1 2 25220511 25220533 mRNA hsa-miR-103 SNURF miRanda miRanda
4189 chr15 25220519 25220519 1 + T C UCEC 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAGCAGCAAGATGCTGCAGCACATTGACTATAGA < 41bp 1 0.62311176284472 1 0.552311778068542 experiment 0.75377647431056 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220519 synonymous SNV . 0 11 hm5C_associated_SNPs_41810 0 0 1 2 25220511 25220533 mRNA hsa-miR-107 SNURF miRanda miRanda
4190 chr11 61725741 61725741 1 + C T UCEC 61725725 + 61725705 61725745 41 GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGTT GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGTAGTT < 41bp 1 0.188948434457832 1 0.21291309595108 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61725725 chr11:61725741 stopgain 0.998 1 37 hm5C_associated_SNPs_41834 0 0 0 2 61725736 61725758 mRNA hsa-miR-376c BEST1 miRanda miRanda
4191 chr11 61725741 61725741 1 + C T UCEC 61725725 + 61725705 61725745 41 GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGTT GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGTAGTT < 41bp 1 0.188948434457832 1 0.21291309595108 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61725725 chr11:61725741 stopgain 0.998 1 37 hm5C_associated_SNPs_41834 0 0 0 2 61725722 61725741 mRNA hsa-miR-873 BEST1 miRanda miRanda
4192 chr1 45267334 45267334 1 + A G UCEC 45267317 + 45267297 45267337 41 CTGGCCCACATCTGGAAGGCCCGGCACACCCTGTTGGAGCC CTGGCCCACATCTGGAAGGCCCGGCACACCCTGTTGGGGCC < 41bp 1 0.243001246965872 1 0.514010369777679 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267317 chr1:45267334 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_42009 0 0 0 1 45267318 45267340 mRNA hsa-miR-149 PLK3 miRanda miRanda
4193 chr1 45267325 45267325 1 + C T UCEC 45267317 + 45267297 45267337 41 CTGGCCCACATCTGGAAGGCCCGGCACACCCTGTTGGAGCC CTGGCCCACATCTGGAAGGCCCGGCACATCCTGTTGGAGCC < 41bp 1 0.228376033942167 1 0.526292681694031 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267317 chr1:45267325 nonsynonymous SNV 0.993 1 29 hm5C_associated_SNPs_42017 0 0 1 1 45267318 45267340 mRNA hsa-miR-149 PLK3 miRanda miRanda
4194 chr1 235577774 235577774 1 + G A UCEC 235577765 + 235577745 235577785 41 CAGGCACCCGACAGGAGGATCCTTTATTCGTCCGAACAAGG CAGGCACCCGACAGGAGGATCCTTTATTCATCCGAACAAGG < 41bp 1 0.0139723917652393 1 0.0280433297157288 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235577765 chr1:235577774 nonsynonymous SNV 0.746 4 30 hm5C_associated_SNPs_42025 0 0 1 1 235577763 235577784 mRNA hsa-miR-375 TBCE miRanda miRanda
4195 chr10 131943489 131943489 1 + T C UCEC 131943482 + 131943462 131943502 41 AATTGATTTACAGGTCCCTCCTTGTGGTCCATTTCTGGGCA AATTGATTTACAGGTCCCTCCTTGTGGCCCATTTCTGGGCA < 41bp 1 0.446934074776589 1 0.24248406291008 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131943482 chr10:131943489 nonsynonymous SNV 0.996 1 28 hm5C_associated_SNPs_42056 0 0 1 1 131943481 131943507 mRNA hsa-miR-455-5p GLRX3 miRanda miRanda
4196 chr2 85598244 85598244 1 + C T UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTTGCCGCCCTCCGACACTACCTCT < 41bp 1 0.385358254105516 1 0.240454703569412 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598244 synonymous SNV . 0 19 hm5C_associated_SNPs_42057 0 0 0 3 85598244 85598265 mRNA hsa-miR-196a ELMOD3 miRanda miRanda
4197 chr2 85598244 85598244 1 + C T UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTTGCCGCCCTCCGACACTACCTCT < 41bp 1 0.385358254105516 1 0.240454703569412 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598244 synonymous SNV . 0 19 hm5C_associated_SNPs_42057 0 0 0 3 85598241 85598263 mRNA hsa-miR-142-3p ELMOD3 miRanda miRanda
4198 chr2 85598244 85598244 1 + C T UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTTGCCGCCCTCCGACACTACCTCT < 41bp 1 0.385358254105516 1 0.240454703569412 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598244 synonymous SNV . 0 19 hm5C_associated_SNPs_42057 0 0 0 3 85598244 85598265 mRNA hsa-miR-196b ELMOD3 miRanda miRanda
4199 chr2 85598244 85598244 1 + C T UCEC 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTTGCCGCCCTCCGACACTACCTCTTCGGG < 41bp 1 0.701741325893278 1 0.787114262580872 experiment 0.596517348213444 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598244 synonymous SNV . 0 14 hm5C_associated_SNPs_42058 0 0 0 3 85598244 85598265 mRNA hsa-miR-196a ELMOD3 miRanda miRanda
4200 chr2 85598244 85598244 1 + C T UCEC 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTTGCCGCCCTCCGACACTACCTCTTCGGG < 41bp 1 0.701741325893278 1 0.787114262580872 experiment 0.596517348213444 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598244 synonymous SNV . 0 14 hm5C_associated_SNPs_42058 0 0 0 3 85598241 85598263 mRNA hsa-miR-142-3p ELMOD3 miRanda miRanda
4201 chr2 85598244 85598244 1 + C T UCEC 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTTGCCGCCCTCCGACACTACCTCTTCGGG < 41bp 1 0.701741325893278 1 0.787114262580872 experiment 0.596517348213444 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598244 synonymous SNV . 0 14 hm5C_associated_SNPs_42058 0 0 0 3 85598244 85598265 mRNA hsa-miR-196b ELMOD3 miRanda miRanda
4202 chr9 100077141 100077141 1 + C T UCEC 100077158 + 100077138 100077178 41 AAGCGTGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT AAGTGTGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT < 41bp 1 0.581019232479822 1 0.487349510192871 experiment 0.837961535040356 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100077158 chr9:100077141 synonymous SNV . 0 4 hm5C_associated_SNPs_42068 0 0 0 2 100077139 100077160 mRNA hsa-miR-448 KIAA1529 miRanda miRanda
4203 chr9 100077141 100077141 1 + C T UCEC 100077158 + 100077138 100077178 41 AAGCGTGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT AAGTGTGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT < 41bp 1 0.581019232479822 1 0.487349510192871 experiment 0.837961535040356 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100077158 chr9:100077141 synonymous SNV . 0 4 hm5C_associated_SNPs_42068 0 0 0 2 100077141 100077163 mRNA hsa-miR-544 KIAA1529 miRanda miRanda
4204 chr17 38152551 38152551 1 + G A UCEC 38152535 + 38152515 38152555 41 ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCACATC < 41bp 1 0.317531055854532 1 0.179141014814377 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38152535 chr17:38152551 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_42070 0 0 1 1 38152529 38152551 mRNA hsa-miR-138 PSMD3 miRanda miRanda
4205 chr11 43908165 43908165 1 + T C UCEC 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGAGAGGGCGTGTATGAAAT < 41bp 1 0.50025803279165 1 0.545542895793915 experiment 0.9994839344167 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908165 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_42085 0 0 1 4 43908156 43908170 mRNA hsa-miR-362-3p ALKBH3 miRanda miRanda
4206 chr11 43908165 43908165 1 + T C UCEC 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGAGAGGGCGTGTATGAAAT < 41bp 1 0.50025803279165 1 0.545542895793915 experiment 0.9994839344167 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908165 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_42085 0 0 1 4 43908159 43908170 mRNA hsa-miR-362-3p ALKBH3 miRanda miRanda
4207 chr11 43908165 43908165 1 + T C UCEC 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGAGAGGGCGTGTATGAAAT < 41bp 1 0.50025803279165 1 0.545542895793915 experiment 0.9994839344167 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908165 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_42085 0 0 1 4 43908156 43908170 mRNA hsa-miR-329 ALKBH3 miRanda miRanda
4208 chr11 43908165 43908165 1 + T C UCEC 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGAGAGGGCGTGTATGAAAT < 41bp 1 0.50025803279165 1 0.545542895793915 experiment 0.9994839344167 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908165 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_42085 0 0 1 4 43908159 43908170 mRNA hsa-miR-329 ALKBH3 miRanda miRanda
4209 chr6 44116555 44116555 1 + T G UCEC 44116536 + 44116516 44116556 41 CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCATC CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCAGC < 41bp 1 0.0932623862785064 1 0.484518468379974 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116536 chr6:44116555 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_42117 0 0 1 3 44116541 44116565 mRNA hsa-miR-29a TMEM63B miRanda miRanda
4210 chr6 44116555 44116555 1 + T G UCEC 44116536 + 44116516 44116556 41 CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCATC CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCAGC < 41bp 1 0.0932623862785064 1 0.484518468379974 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116536 chr6:44116555 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_42117 0 0 1 3 44116542 44116565 mRNA hsa-miR-29b TMEM63B miRanda miRanda
4211 chr6 44116555 44116555 1 + T G UCEC 44116536 + 44116516 44116556 41 CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCATC CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCAGC < 41bp 1 0.0932623862785064 1 0.484518468379974 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116536 chr6:44116555 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_42117 0 0 1 3 44116541 44116565 mRNA hsa-miR-29c TMEM63B miRanda miRanda
4212 chrX 48564769 48564769 1 + C T UCEC 48564763 + 48564743 48564783 41 GACGTGTACACCGTGGATGCCGCCTACTATGGCAACATCTC GACGTGTACACCGTGGATGCCGCCTATTATGGCAACATCTC < 41bp 1 0.335490720848188 1 0.20716181397438 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48564763 chrX:48564769 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_42133 0 0 1 1 48564763 48564785 mRNA hsa-miR-122 SUV39H1 miRanda miRanda
4213 chr11 65269085 65269085 1 + A G UCEC 65269082 + 65269062 65269102 41 AGATGCTATAGTACTATTGACAAACTGGGTTAGAGAAGGAG AGATGCTATAGTACTATTGACAAGCTGGGTTAGAGAAGGAG < 41bp 1 0.284728169193814 1 0.38245415687561 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269082 chr11:65269085 . . 0 24 hm5C_associated_SNPs_42134 0 0 1 2 65269083 65269105 lncRNA hsa-miR-483-3p MALAT1 miRanda starBase2
4214 chr11 65269085 65269085 1 + A G UCEC 65269082 + 65269062 65269102 41 AGATGCTATAGTACTATTGACAAACTGGGTTAGAGAAGGAG AGATGCTATAGTACTATTGACAAGCTGGGTTAGAGAAGGAG < 41bp 1 0.284728169193814 1 0.38245415687561 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269082 chr11:65269085 . . 0 24 hm5C_associated_SNPs_42134 0 0 1 2 65269079 65269100 lncRNA hsa-miR-942-5p MALAT1 miRanda starBase2
4215 chr11 65269085 65269085 1 + A G UCEC 65269086 + 65269066 65269106 41 GCTATAGTACTATTGACAAACTGGGTTAGAGAAGGAGTGTA GCTATAGTACTATTGACAAGCTGGGTTAGAGAAGGAGTGTA < 41bp 1 0.717749043149877 1 0.477365136146545 experiment 0.564501913700245 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269086 chr11:65269085 . . 0 20 hm5C_associated_SNPs_42135 0 0 1 2 65269083 65269105 lncRNA hsa-miR-483-3p MALAT1 miRanda starBase2
4216 chr11 65269085 65269085 1 + A G UCEC 65269086 + 65269066 65269106 41 GCTATAGTACTATTGACAAACTGGGTTAGAGAAGGAGTGTA GCTATAGTACTATTGACAAGCTGGGTTAGAGAAGGAGTGTA < 41bp 1 0.717749043149877 1 0.477365136146545 experiment 0.564501913700245 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269086 chr11:65269085 . . 0 20 hm5C_associated_SNPs_42135 0 0 1 2 65269079 65269100 lncRNA hsa-miR-942-5p MALAT1 miRanda starBase2
4217 chr11 120957738 120957738 1 + C A UCEC 120957753 + 120957733 120957773 41 CAGCTCTCGGGCATTGCATTCCTTTGGCATTAGGGATGGAG CAGCTATCGGGCATTGCATTCCTTTGGCATTAGGGATGGAG < 41bp 1 0.034473216595676 1 0.0714091956615448 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBCEL ENSG00000154114 CDS Human protein_coding chr11:120957753 chr11:120957738 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_42142 0 0 1 1 120957727 120957748 mRNA hsa-miR-365 TBCEL miRanda miRanda
4218 chr11 35250853 35250853 1 + G T UCEC 35250851 + 35250831 35250871 41 CTGATGAGACAAGGAACCTGCAGAATGTGGACATGAAGATT CTGATGAGACAAGGAACCTGCATAATGTGGACATGAAGATT < 41bp 1 0.306641980941521 1 0.102656066417694 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35250851 chr11:35250853 nonsynonymous SNV 0.986 3 23 hm5C_associated_SNPs_42209 0 0 1 1 35250835 35250856 mRNA hsa-miR-544 CD44 miRanda miRanda
4219 chr6 44116553 44116553 1 + C A UCEC 44116536 + 44116516 44116556 41 CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCATC CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTAATC < 41bp 1 0.0942493911556688 1 0.724096298217773 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116536 chr6:44116553 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_42235 0 0 1 3 44116541 44116565 mRNA hsa-miR-29a TMEM63B miRanda miRanda
4220 chr6 44116553 44116553 1 + C A UCEC 44116536 + 44116516 44116556 41 CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCATC CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTAATC < 41bp 1 0.0942493911556688 1 0.724096298217773 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116536 chr6:44116553 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_42235 0 0 1 3 44116542 44116565 mRNA hsa-miR-29b TMEM63B miRanda miRanda
4221 chr6 44116553 44116553 1 + C A UCEC 44116536 + 44116516 44116556 41 CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCATC CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTAATC < 41bp 1 0.0942493911556688 1 0.724096298217773 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116536 chr6:44116553 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_42235 0 0 1 3 44116541 44116565 mRNA hsa-miR-29c TMEM63B miRanda miRanda
4222 chrX 73042378 73042378 1 - C A UCEC 73042369 - 73042349 73042389 41 AGAATATAGGAGAAAGGTTACTGTTTATTTTTTTTCATGTA AGAATATAGGATAAAGGTTACTGTTTATTTTTTTTCATGTA < 41bp 1 0.0453259032056208 1 0.0718485713005066 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042369 chrX:73042378 . . 0 12 hm5C_associated_SNPs_42236 0 0 1 1 73042378 73042399 lncRNA hsa-miR-337-3p XIST miRanda starBase2
4223 chr11 65267165 65267165 1 + G T UCEC 65267145 + 65267125 65267165 41 TGAAGTGGAAAACTGGAAGACAGAAGTACGGGAAGGCGAAG TGAAGTGGAAAACTGGAAGACAGAAGTACGGGAAGGCGAAT < 41bp 1 0.644361233487318 1 0.827397048473358 experiment 0.711277533025365 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267145 chr11:65267165 . . 0 41 hm5C_associated_SNPs_42256 0 0 1 1 65267160 65267181 lncRNA hsa-miR-942-5p MALAT1 miRanda starBase2
4224 chr11 65267165 65267165 1 + G T UCEC 65267153 + 65267133 65267173 41 AAAACTGGAAGACAGAAGTACGGGAAGGCGAAGAAAAGAAT AAAACTGGAAGACAGAAGTACGGGAAGGCGAATAAAAGAAT < 41bp 1 0.71606162036953 1 0.717091262340546 experiment 0.56787675926094 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267153 chr11:65267165 . . 0 33 hm5C_associated_SNPs_42257 0 0 1 1 65267160 65267181 lncRNA hsa-miR-942-5p MALAT1 miRanda starBase2
4225 chrX 73046580 73046580 1 - G A UCEC 73046568 - 73046548 73046588 41 GACCCAAGCGAAAAAGGTATCTCAAGACTAACGGCCGGAAT GACCCAAGTGAAAAAGGTATCTCAAGACTAACGGCCGGAAT < 41bp 1 0.697091320102448 1 0.331723749637604 experiment 0.605817359795104 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046568 chrX:73046580 . . 0 9 hm5C_associated_SNPs_42296 0 0 1 1 73046561 73046582 lncRNA hsa-miR-526b-5p XIST miRanda starBase2
4226 chrX 73046580 73046580 1 - G A UCEC 73046585 - 73046565 73046605 41 TACCTAGATGGATAGAGGACCCAAGCGAAAAAGGTATCTCA TACCTAGATGGATAGAGGACCCAAGTGAAAAAGGTATCTCA < 41bp 1 0.109097435776503 1 0.259132981300354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046585 chrX:73046580 . . 0 26 hm5C_associated_SNPs_42297 0 0 1 1 73046561 73046582 lncRNA hsa-miR-526b-5p XIST miRanda starBase2
4227 chr17 80426686 80426686 1 + C A UCEC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCATCAATCTTTGC < 41bp 1 0.523163815354948 1 0.365755677223206 experiment 0.953672369290104 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426686 nonsynonymous SNV 0.997 4 30 hm5C_associated_SNPs_42380 0 0 1 2 80426682 80426701 mRNA hsa-miR-124 NARF miRanda miRanda
4228 chr17 80426686 80426686 1 + C A UCEC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCATCAATCTTTGC < 41bp 1 0.523163815354948 1 0.365755677223206 experiment 0.953672369290104 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426686 nonsynonymous SNV 0.997 4 30 hm5C_associated_SNPs_42380 0 0 1 2 80426681 80426701 mRNA hsa-miR-506 NARF miRanda miRanda
4229 chr5 7885823 7885823 1 + T C UCEC 7885818 + 7885798 7885838 41 TTTGGCTCTTCTCTAGAATACAGACTTTTCCTATCAGCCTG TTTGGCTCTTCTCTAGAATACAGACCTTTCCTATCAGCCTG < 41bp 1 0.323511221091989 1 0.363283932209015 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885818 chr5:7885823 nonsynonymous SNV 0.959 0 26 hm5C_associated_SNPs_42382 0 0 1 3 7885814 7885826 mRNA hsa-miR-320a MTRR miRanda miRanda
4230 chr5 7885823 7885823 1 + T C UCEC 7885818 + 7885798 7885838 41 TTTGGCTCTTCTCTAGAATACAGACTTTTCCTATCAGCCTG TTTGGCTCTTCTCTAGAATACAGACCTTTCCTATCAGCCTG < 41bp 1 0.323511221091989 1 0.363283932209015 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885818 chr5:7885823 nonsynonymous SNV 0.959 0 26 hm5C_associated_SNPs_42382 0 0 1 3 7885814 7885826 mRNA hsa-miR-320b MTRR miRanda miRanda
4231 chr5 7885823 7885823 1 + T C UCEC 7885818 + 7885798 7885838 41 TTTGGCTCTTCTCTAGAATACAGACTTTTCCTATCAGCCTG TTTGGCTCTTCTCTAGAATACAGACCTTTCCTATCAGCCTG < 41bp 1 0.323511221091989 1 0.363283932209015 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885818 chr5:7885823 nonsynonymous SNV 0.959 0 26 hm5C_associated_SNPs_42382 0 0 1 3 7885814 7885826 mRNA hsa-miR-320c MTRR miRanda miRanda
4232 chr5 7885823 7885823 1 + T C UCEC 7885822 + 7885802 7885842 41 GCTCTTCTCTAGAATACAGACTTTTCCTATCAGCCTGGAGA GCTCTTCTCTAGAATACAGACCTTTCCTATCAGCCTGGAGA < 41bp 1 0.0161034813128289 1 0.0157137215137482 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885822 chr5:7885823 nonsynonymous SNV 0.959 0 22 hm5C_associated_SNPs_42383 0 0 1 3 7885814 7885826 mRNA hsa-miR-320a MTRR miRanda miRanda
4233 chr5 7885823 7885823 1 + T C UCEC 7885822 + 7885802 7885842 41 GCTCTTCTCTAGAATACAGACTTTTCCTATCAGCCTGGAGA GCTCTTCTCTAGAATACAGACCTTTCCTATCAGCCTGGAGA < 41bp 1 0.0161034813128289 1 0.0157137215137482 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885822 chr5:7885823 nonsynonymous SNV 0.959 0 22 hm5C_associated_SNPs_42383 0 0 1 3 7885814 7885826 mRNA hsa-miR-320b MTRR miRanda miRanda
4234 chr5 7885823 7885823 1 + T C UCEC 7885822 + 7885802 7885842 41 GCTCTTCTCTAGAATACAGACTTTTCCTATCAGCCTGGAGA GCTCTTCTCTAGAATACAGACCTTTCCTATCAGCCTGGAGA < 41bp 1 0.0161034813128289 1 0.0157137215137482 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885822 chr5:7885823 nonsynonymous SNV 0.959 0 22 hm5C_associated_SNPs_42383 0 0 1 3 7885814 7885826 mRNA hsa-miR-320c MTRR miRanda miRanda
4235 chr5 7885823 7885823 1 + T C UCEC 7885828 + 7885808 7885848 41 CTCTAGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTT CTCTAGAATACAGACCTTTCCTATCAGCCTGGAGATGCCTT < 41bp 1 0.108631622202054 1 0.0849094390869141 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885828 chr5:7885823 nonsynonymous SNV 0.959 0 16 hm5C_associated_SNPs_42384 0 0 1 3 7885814 7885826 mRNA hsa-miR-320a MTRR miRanda miRanda
4236 chr5 7885823 7885823 1 + T C UCEC 7885828 + 7885808 7885848 41 CTCTAGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTT CTCTAGAATACAGACCTTTCCTATCAGCCTGGAGATGCCTT < 41bp 1 0.108631622202054 1 0.0849094390869141 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885828 chr5:7885823 nonsynonymous SNV 0.959 0 16 hm5C_associated_SNPs_42384 0 0 1 3 7885814 7885826 mRNA hsa-miR-320b MTRR miRanda miRanda
4237 chr5 7885823 7885823 1 + T C UCEC 7885828 + 7885808 7885848 41 CTCTAGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTT CTCTAGAATACAGACCTTTCCTATCAGCCTGGAGATGCCTT < 41bp 1 0.108631622202054 1 0.0849094390869141 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885828 chr5:7885823 nonsynonymous SNV 0.959 0 16 hm5C_associated_SNPs_42384 0 0 1 3 7885814 7885826 mRNA hsa-miR-320c MTRR miRanda miRanda
4238 chr5 7885823 7885823 1 + T C UCEC 7885832 + 7885812 7885852 41 AGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGC AGAATACAGACCTTTCCTATCAGCCTGGAGATGCCTTCAGC < 41bp 1 0.472273744423838 1 0.260106205940247 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885832 chr5:7885823 nonsynonymous SNV 0.959 0 12 hm5C_associated_SNPs_42385 0 0 1 3 7885814 7885826 mRNA hsa-miR-320a MTRR miRanda miRanda
4239 chr5 7885823 7885823 1 + T C UCEC 7885832 + 7885812 7885852 41 AGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGC AGAATACAGACCTTTCCTATCAGCCTGGAGATGCCTTCAGC < 41bp 1 0.472273744423838 1 0.260106205940247 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885832 chr5:7885823 nonsynonymous SNV 0.959 0 12 hm5C_associated_SNPs_42385 0 0 1 3 7885814 7885826 mRNA hsa-miR-320b MTRR miRanda miRanda
4240 chr5 7885823 7885823 1 + T C UCEC 7885832 + 7885812 7885852 41 AGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGC AGAATACAGACCTTTCCTATCAGCCTGGAGATGCCTTCAGC < 41bp 1 0.472273744423838 1 0.260106205940247 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885832 chr5:7885823 nonsynonymous SNV 0.959 0 12 hm5C_associated_SNPs_42385 0 0 1 3 7885814 7885826 mRNA hsa-miR-320c MTRR miRanda miRanda
4241 chr5 7885823 7885823 1 + T C UCEC 7885835 + 7885815 7885855 41 ATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGCGTG ATACAGACCTTTCCTATCAGCCTGGAGATGCCTTCAGCGTG < 41bp 1 0.239218974978599 1 0.093623161315918 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885835 chr5:7885823 nonsynonymous SNV 0.959 0 9 hm5C_associated_SNPs_42386 0 0 1 3 7885814 7885826 mRNA hsa-miR-320a MTRR miRanda miRanda
4242 chr5 7885823 7885823 1 + T C UCEC 7885835 + 7885815 7885855 41 ATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGCGTG ATACAGACCTTTCCTATCAGCCTGGAGATGCCTTCAGCGTG < 41bp 1 0.239218974978599 1 0.093623161315918 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885835 chr5:7885823 nonsynonymous SNV 0.959 0 9 hm5C_associated_SNPs_42386 0 0 1 3 7885814 7885826 mRNA hsa-miR-320b MTRR miRanda miRanda
4243 chr5 7885823 7885823 1 + T C UCEC 7885835 + 7885815 7885855 41 ATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGCGTG ATACAGACCTTTCCTATCAGCCTGGAGATGCCTTCAGCGTG < 41bp 1 0.239218974978599 1 0.093623161315918 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885835 chr5:7885823 nonsynonymous SNV 0.959 0 9 hm5C_associated_SNPs_42386 0 0 1 3 7885814 7885826 mRNA hsa-miR-320c MTRR miRanda miRanda
4244 chr9 36162451 36162451 1 + T C UCEC 36162431 + 36162411 36162451 41 GGCGTCCGCAAGTGACGGGTCCTCCTTTGTGGTGGCCAGAT GGCGTCCGCAAGTGACGGGTCCTCCTTTGTGGTGGCCAGAC < 41bp 1 0.0858085583193034 1 0.0478655695915222 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLIPR2 ENSG00000122694 CDS Human protein_coding chr9:36162431 chr9:36162451 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_42404 0 0 0 1 36162451 36162472 mRNA hsa-miR-543 GLIPR2 miRanda miRanda
4245 chr17 15929916 15929916 1 + C A UCEC 15929902 + 15929882 15929922 41 CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCCTATATT CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCATATATT < 41bp 1 0.138025550809593 1 0.0389781296253204 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15929902 chr17:15929916 synonymous SNV . 0 35 hm5C_associated_SNPs_42405 0 0 1 1 15929911 15929931 mRNA hsa-miR-448 TTC19 miRanda miRanda
4246 chr17 48166613 48166613 1 + G A UCEC 48166618 + 48166598 48166638 41 CCAGCTGGCAGACTCGGGACCAATACTACTGACGTCCTCCC CCAGCTGGCAGACTCAGGACCAATACTACTGACGTCCTCCC < 41bp 1 0.360449989303375 1 0.14400726556778 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48166618 chr17:48166613 nonsynonymous SNV 0.998 0 16 hm5C_associated_SNPs_42435 0 0 1 2 48166599 48166621 mRNA hsa-miR-133a ITGA3 miRanda miRanda
4247 chr17 48166613 48166613 1 + G A UCEC 48166618 + 48166598 48166638 41 CCAGCTGGCAGACTCGGGACCAATACTACTGACGTCCTCCC CCAGCTGGCAGACTCAGGACCAATACTACTGACGTCCTCCC < 41bp 1 0.360449989303375 1 0.14400726556778 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48166618 chr17:48166613 nonsynonymous SNV 0.998 0 16 hm5C_associated_SNPs_42435 0 0 1 2 48166599 48166621 mRNA hsa-miR-133b ITGA3 miRanda miRanda
4248 chr2 28521313 28521313 1 + C T UCEC 28521298 + 28521278 28521318 41 TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCCGTACA TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCTGTACA < 41bp 1 0.18217685342567 1 0.146111130714417 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28521298 chr2:28521313 nonsynonymous SNV 0.903 4 36 hm5C_associated_SNPs_42480 0 0 1 1 28521311 28521335 mRNA hsa-miR-324-5p BRE miRanda miRanda
4249 chr9 131011004 131011004 1 + A G UCEC 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACCGTGAGGGACCTCATGCCCAGGACCATCATG < 41bp 1 0.36047383435455 1 0.0553626120090485 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131011004 nonsynonymous SNV 0.997 4 31 hm5C_associated_SNPs_42512 0 0 1 2 131010999 131011021 mRNA hsa-miR-18a DNM1 miRanda miRanda
4250 chr9 131011004 131011004 1 + A G UCEC 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACCGTGAGGGACCTCATGCCCAGGACCATCATG < 41bp 1 0.36047383435455 1 0.0553626120090485 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131011004 nonsynonymous SNV 0.997 4 31 hm5C_associated_SNPs_42512 0 0 1 2 131010999 131011021 mRNA hsa-miR-18b DNM1 miRanda miRanda
4251 chr11 33358655 33358655 1 + G A UCEC 33358660 + 33358640 33358680 41 CTCAAGGTTTGCCAGGAGAACAGTTGTTAAATGTGGGTACT CTCAAGGTTTGCCAGAAGAACAGTTGTTAAATGTGGGTACT < 41bp 1 0.199076537553222 1 0.115263879299164 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33358660 chr11:33358655 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_42518 0 0 0 3 33358655 33358676 mRNA hsa-miR-23a HIPK3 miRanda miRanda
4252 chr11 33358655 33358655 1 + G A UCEC 33358660 + 33358640 33358680 41 CTCAAGGTTTGCCAGGAGAACAGTTGTTAAATGTGGGTACT CTCAAGGTTTGCCAGAAGAACAGTTGTTAAATGTGGGTACT < 41bp 1 0.199076537553222 1 0.115263879299164 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33358660 chr11:33358655 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_42518 0 0 0 3 33358655 33358676 mRNA hsa-miR-23b HIPK3 miRanda miRanda
4253 chr11 33358655 33358655 1 + G A UCEC 33358660 + 33358640 33358680 41 CTCAAGGTTTGCCAGGAGAACAGTTGTTAAATGTGGGTACT CTCAAGGTTTGCCAGAAGAACAGTTGTTAAATGTGGGTACT < 41bp 1 0.199076537553222 1 0.115263879299164 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33358660 chr11:33358655 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_42518 0 0 0 3 33358642 33358668 mRNA hsa-miR-141 HIPK3 miRanda miRanda
4254 chrX 73040937 73040937 1 - G T UCEC 73040931 - 73040911 73040951 41 AGTAACACCCCTTTCTTCAGCTGGGGATGGGGAATGGATTA AGTAACACCCCTTTATTCAGCTGGGGATGGGGAATGGATTA < 41bp 1 0.62218822293119 1 0.736357390880585 experiment 0.75562355413762 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040931 chrX:73040937 . . 0 15 hm5C_associated_SNPs_42525 0 0 1 1 73040924 73040946 lncRNA hsa-miR-2355-5p XIST miRanda starBase2
4255 chrX 73040937 73040937 1 - G T UCEC 73040934 - 73040914 73040954 41 CTCAGTAACACCCCTTTCTTCAGCTGGGGATGGGGAATGGA CTCAGTAACACCCCTTTATTCAGCTGGGGATGGGGAATGGA < 41bp 1 0.33620326234882 1 0.233541995286942 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040934 chrX:73040937 . . 0 18 hm5C_associated_SNPs_42526 0 0 1 1 73040924 73040946 lncRNA hsa-miR-2355-5p XIST miRanda starBase2
4256 chrX 73041555 73041555 1 - G C UCEC 73041535 - 73041515 73041555 41 CCTTTTCCGTTTTTAAATCACTCACAGAGGGTGGGACAGGA GCTTTTCCGTTTTTAAATCACTCACAGAGGGTGGGACAGGA < 41bp 1 0.128792389196679 1 0.0893210172653198 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041535 chrX:73041555 . . 0 1 hm5C_associated_SNPs_42599 0 0 1 1 73041544 73041569 lncRNA hsa-miR-191-5p XIST miRanda starBase2
4257 chrX 73041555 73041555 1 - G C UCEC 73041537 - 73041517 73041557 41 GACCTTTTCCGTTTTTAAATCACTCACAGAGGGTGGGACAG GAGCTTTTCCGTTTTTAAATCACTCACAGAGGGTGGGACAG < 41bp 1 0.0873780742209063 1 0.0961666107177734 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041537 chrX:73041555 . . 0 3 hm5C_associated_SNPs_42600 0 0 1 1 73041544 73041569 lncRNA hsa-miR-191-5p XIST miRanda starBase2
4258 chrX 73041555 73041555 1 - G C UCEC 73041549 - 73041529 73041569 41 TGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACTCACAG TGGCTGGGCTTTGAGCTTTTCCGTTTTTAAATCACTCACAG < 41bp 1 0.0776296505867938 1 0.114622473716736 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041549 chrX:73041555 . . 0 15 hm5C_associated_SNPs_42601 0 0 1 1 73041544 73041569 lncRNA hsa-miR-191-5p XIST miRanda starBase2
4259 chrX 73041555 73041555 1 - G C UCEC 73041554 - 73041534 73041574 41 AGGCCTGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACT AGGCCTGGCTGGGCTTTGAGCTTTTCCGTTTTTAAATCACT < 41bp 1 0.00971162047301388 1 0.123138964176178 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041554 chrX:73041555 . . 0 20 hm5C_associated_SNPs_42602 0 0 1 1 73041544 73041569 lncRNA hsa-miR-191-5p XIST miRanda starBase2
4260 chrX 73041555 73041555 1 - G C UCEC 73041561 - 73041541 73041581 41 TAAATGTAGGCCTGGCTGGGCTTTGACCTTTTCCGTTTTTA TAAATGTAGGCCTGGCTGGGCTTTGAGCTTTTCCGTTTTTA < 41bp 1 0.0323969848577781 1 0.0608313083648682 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041561 chrX:73041555 . . 0 27 hm5C_associated_SNPs_42603 0 0 1 1 73041544 73041569 lncRNA hsa-miR-191-5p XIST miRanda starBase2
4261 chrX 73041555 73041555 1 - G C UCEC 73041566 - 73041546 73041586 41 TTCTCTAAATGTAGGCCTGGCTGGGCTTTGACCTTTTCCGT TTCTCTAAATGTAGGCCTGGCTGGGCTTTGAGCTTTTCCGT < 41bp 1 0.509193781134427 1 0.251679718494415 experiment 0.981612437731146 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041566 chrX:73041555 . . 0 32 hm5C_associated_SNPs_42604 0 0 1 1 73041544 73041569 lncRNA hsa-miR-191-5p XIST miRanda starBase2
4262 chr16 29853333 29853333 1 + C T UCEC 29853323 + 29853303 29853343 41 GCTGGGCGGCCCAAGCGTCCCCATGCCCGCCGTGCGCTCTG GCTGGGCGGCCCAAGCGTCCCCATGCCCGCTGTGCGCTCTG < 41bp 1 0.281397685715762 1 0.162575453519821 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29853323 chr16:29853333 nonsynonymous SNV 0.993 3 31 hm5C_associated_SNPs_42656 0 0 0 1 29853328 29853351 mRNA hsa-miR-214 MVP miRanda miRanda
4263 chr19 54649743 54649743 1 + C T UCEC 54649752 + 54649732 54649772 41 ACCACCTCCAGCTCTCCCATCCCGCCCAGCCCAGCCAACTG ACCACCTCCAGTTCTCCCATCCCGCCCAGCCCAGCCAACTG < 41bp 1 0.192379898782454 1 0.414322346448898 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54649752 chr19:54649743 synonymous SNV . 0 12 hm5C_associated_SNPs_42684 0 0 1 1 54649725 54649748 mRNA hsa-miR-485-5p CNOT3 miRanda miRanda
4264 chr6 31525821 31525821 1 + G A UCEC 31525833 + 31525813 31525853 41 GAAACCCAGGAACCTGAGTCCTTCTCAGCCTGGTCAGATCG GAAACCCAAGAACCTGAGTCCTTCTCAGCCTGGTCAGATCG < 41bp 1 0.217517893726319 1 0.110365301370621 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NFKBIL1 ENSG00000204498 CDS Human protein_coding chr6:31525833 chr6:31525821 synonymous SNV . 0 9 hm5C_associated_SNPs_42712 0 0 0 1 31525816 31525840 mRNA hsa-miR-488 NFKBIL1 miRanda miRanda
4265 chr9 78506250 78506250 1 + C T UCEC 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAATCGTAT < 41bp 1 0.0420873929029517 1 0.0275035798549652 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506250 synonymous SNV . 0 36 hm5C_associated_SNPs_42745 0 0 0 1 78506249 78506269 mRNA hsa-miR-431 PCSK5 miRanda miRanda
4266 chr6 117869595 117869595 1 + T G UCEC 117869589 + 117869569 117869609 41 CCTCAACCAGACGGCCATGACTGCCCTTTTGTGAACACAAT CCTCAACCAGACGGCCATGACTGCCCGTTTGTGAACACAAT < 41bp 1 0.406615294547322 1 0.346199750900269 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117869589 chr6:117869595 nonsynonymous SNV 0.996 2 27 hm5C_associated_SNPs_42765 0 0 1 2 117869594 117869614 mRNA hsa-miR-23a DCBLD1 miRanda miRanda
4267 chr6 117869595 117869595 1 + T G UCEC 117869589 + 117869569 117869609 41 CCTCAACCAGACGGCCATGACTGCCCTTTTGTGAACACAAT CCTCAACCAGACGGCCATGACTGCCCGTTTGTGAACACAAT < 41bp 1 0.406615294547322 1 0.346199750900269 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117869589 chr6:117869595 nonsynonymous SNV 0.996 2 27 hm5C_associated_SNPs_42765 0 0 1 2 117869594 117869614 mRNA hsa-miR-23b DCBLD1 miRanda miRanda
4268 chr20 44522631 44522631 1 + T C UCEC 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTCGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.139723926052388 1 0.93926477432251 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522631 nonsynonymous SNV 0.975 5 9 hm5C_associated_SNPs_42850 0 0 1 1 44522627 44522644 mRNA hsa-miR-185 CTSA miRanda miRanda
4269 chr22 19707361 19707361 1 + C T UCEC 19707377 + 19707357 19707397 41 GGTCCACAGCCTCTTCCTGACAGACTTGTACAAGGACCGGA GGTCTACAGCCTCTTCCTGACAGACTTGTACAAGGACCGGA < 41bp 1 0.255649407945364 1 0.136840164661407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19707377 chr22:19707361 nonsynonymous SNV 0.999 2 5 hm5C_associated_SNPs_42867 0 0 1 1 19707345 19707370 mRNA hsa-miR-485-5p SEPT5 miRanda miRanda
4270 chr11 73588106 73588106 1 + G A UCEC 73588109 + 73588089 73588129 41 AGAGCGACTGGGCGCAAGCCCTCAGGTGAATCCAGGCCCAG AGAGCGACTGGGCGCAAACCCTCAGGTGAATCCAGGCCCAG < 41bp 1 0.749965959626844 1 0.34308248758316 experiment 0.500068080746313 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73588109 chr11:73588106 nonsynonymous SNV 0.440 1 18 hm5C_associated_SNPs_42879 0 0 1 1 73588087 73588111 mRNA hsa-miR-296-3p PAAF1 miRanda miRanda
4271 chr12 95877001 95877001 1 + C T UCEC 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGTGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA < 41bp 1 0.332176080976245 1 0.312281757593155 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877001 synonymous SNV . 0 7 hm5C_associated_SNPs_42881 0 0 1 1 95877001 95877023 mRNA hsa-miR-145 METAP2 miRanda miRanda
4272 chrX 73045686 73045686 1 - C T UCEC 73045684 - 73045664 73045704 41 TGGGAAGTTGATTTAAATGACTGATAATGTGTATGAAAGCA TGGGAAGTTGATTTAAATAACTGATAATGTGTATGAAAGCA < 41bp 1 0.0776352859673745 1 0.088361918926239 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045684 chrX:73045686 . . 0 19 hm5C_associated_SNPs_42887 0 0 1 3 73045677 73045696 lncRNA hsa-miR-374a-3p XIST miRanda starBase2
4273 chrX 73045686 73045686 1 - C T UCEC 73045684 - 73045664 73045704 41 TGGGAAGTTGATTTAAATGACTGATAATGTGTATGAAAGCA TGGGAAGTTGATTTAAATAACTGATAATGTGTATGAAAGCA < 41bp 1 0.0776352859673745 1 0.088361918926239 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045684 chrX:73045686 . . 0 19 hm5C_associated_SNPs_42887 0 0 1 3 73045668 73045689 lncRNA hsa-miR-485-3p XIST miRanda starBase2
4274 chrX 73045686 73045686 1 - C T UCEC 73045684 - 73045664 73045704 41 TGGGAAGTTGATTTAAATGACTGATAATGTGTATGAAAGCA TGGGAAGTTGATTTAAATAACTGATAATGTGTATGAAAGCA < 41bp 1 0.0776352859673745 1 0.088361918926239 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045684 chrX:73045686 . . 0 19 hm5C_associated_SNPs_42887 0 0 1 3 73045668 73045689 lncRNA hsa-miR-539-3p XIST miRanda starBase2
4275 chr7 99956371 99956371 1 + C T UCEC 99956353 + 99956333 99956373 41 CCAAGCTACCTTTATGGGGTCACTCAACCAAAACACCTCTC CCAAGCTACCTTTATGGGGTCACTCAACCAAAACACCTTTC < 41bp 1 0.0732241739459779 1 0.0205260813236237 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956353 chr7:99956371 synonymous SNV . 0 39 hm5C_associated_SNPs_42925 0 0 0 1 99956358 99956380 mRNA hsa-miR-485-5p PILRB miRanda miRanda
4276 chr12 95694213 95694213 1 + G A UCEC 95694232 + 95694212 95694252 41 AGCAGATGGAAGTGGTCTGACCACTGCCCCTCCAACTCCCA AACAGATGGAAGTGGTCTGACCACTGCCCCTCCAACTCCCA < 41bp 1 0.333348836944593 1 0.161350458860397 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95694232 chr12:95694213 nonsynonymous SNV 0.001 0 2 hm5C_associated_SNPs_42926 0 0 1 1 95694189 95694214 mRNA hsa-miR-9 VEZT miRanda miRanda
4277 chr2 71297694 71297694 1 + A C UCEC 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGCTGGACTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.597970913841022 1 0.27280205488205 experiment 0.804058172317956 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297694 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_42927 0 0 1 2 71297694 71297715 mRNA hsa-miR-140-5p NAGK miRanda miRanda
4278 chr2 71297694 71297694 1 + A C UCEC 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGCTGGACTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.597970913841022 1 0.27280205488205 experiment 0.804058172317956 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297694 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_42927 0 0 1 2 71297689 71297709 mRNA hsa-miR-599 NAGK miRanda miRanda
4279 chr2 71297701 71297701 1 + G A UCEC 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGATGGACTAAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.627389898650434 1 0.273150742053986 experiment 0.745220202699132 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297701 synonymous SNV . 0 18 hm5C_associated_SNPs_42943 0 0 1 2 71297694 71297715 mRNA hsa-miR-140-5p NAGK miRanda miRanda
4280 chr2 71297701 71297701 1 + G A UCEC 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGATGGACTAAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.627389898650434 1 0.273150742053986 experiment 0.745220202699132 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297701 synonymous SNV . 0 18 hm5C_associated_SNPs_42943 0 0 1 2 71297689 71297709 mRNA hsa-miR-599 NAGK miRanda miRanda
4281 chrX 77373633 77373633 1 + A T UCEC 77373646 + 77373626 77373666 41 CTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCG CTTGGAGTGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCG < 41bp 1 0.0737082680129575 1 0.0477201342582703 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373646 chrX:77373633 nonsynonymous SNV 0.995 2 8 hm5C_associated_SNPs_42968 0 0 1 2 77373617 77373642 mRNA hsa-miR-330-5p PGK1 miRanda miRanda
4282 chrX 77373633 77373633 1 + A T UCEC 77373646 + 77373626 77373666 41 CTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCG CTTGGAGTGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCG < 41bp 1 0.0737082680129575 1 0.0477201342582703 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373646 chrX:77373633 nonsynonymous SNV 0.995 2 8 hm5C_associated_SNPs_42968 0 0 1 2 77373623 77373642 mRNA hsa-miR-326 PGK1 miRanda miRanda
4283 chr12 95888844 95888844 1 + C T UCEC 95888833 + 95888813 95888853 41 CTCTCAATAATTGTGCTGCCCATTATACTCCCAATGCCGGT CTCTCAATAATTGTGCTGCCCATTATACTCCTAATGCCGGT < 41bp 1 0.32145210351568 1 0.0506909787654877 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95888833 chr12:95888844 synonymous SNV . 0 32 hm5C_associated_SNPs_42976 0 0 1 1 95888842 95888861 mRNA hsa-miR-599 METAP2 miRanda miRanda
4284 chr2 217311862 217311862 1 + G A UCEC 217311863 + 217311843 217311883 41 TTTCATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGT TTTCATGCCTTTGGACTTCACTACTGTGATGCCAAACGGGT < 41bp 1 0.474611928353265 1 0.107269793748856 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311863 chr2:217311862 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_42981 0 0 0 2 217311852 217311872 mRNA hsa-miR-27a SMARCAL1 miRanda miRanda
4285 chr2 217311862 217311862 1 + G A UCEC 217311863 + 217311843 217311883 41 TTTCATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGT TTTCATGCCTTTGGACTTCACTACTGTGATGCCAAACGGGT < 41bp 1 0.474611928353265 1 0.107269793748856 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311863 chr2:217311862 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_42981 0 0 0 2 217311852 217311872 mRNA hsa-miR-27b SMARCAL1 miRanda miRanda
4286 chr2 217311862 217311862 1 + G A UCEC 217311866 + 217311846 217311886 41 CATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGTATG CATGCCTTTGGACTTCACTACTGTGATGCCAAACGGGTATG < 41bp 1 0.416005175128236 1 0.0473084151744843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311866 chr2:217311862 nonsynonymous SNV 1.000 5 17 hm5C_associated_SNPs_42982 0 0 0 2 217311852 217311872 mRNA hsa-miR-27a SMARCAL1 miRanda miRanda
4287 chr2 217311862 217311862 1 + G A UCEC 217311866 + 217311846 217311886 41 CATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGTATG CATGCCTTTGGACTTCACTACTGTGATGCCAAACGGGTATG < 41bp 1 0.416005175128236 1 0.0473084151744843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311866 chr2:217311862 nonsynonymous SNV 1.000 5 17 hm5C_associated_SNPs_42982 0 0 0 2 217311852 217311872 mRNA hsa-miR-27b SMARCAL1 miRanda miRanda
4288 chr9 139730262 139730262 1 + G A UCEC 139730261 + 139730241 139730281 41 CGCCACGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG CGCCACGCTGGAGGAGCTGTCAGTGCAGCAGGAGACGGAGG < 41bp 1 0.481985137743974 1 0.558240115642548 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139730261 chr9:139730262 synonymous SNV . 0 22 hm5C_associated_SNPs_42988 0 0 1 1 139730252 139730273 mRNA hsa-miR-370 C9orf86 miRanda miRanda
4289 chr9 139730262 139730262 1 + G A UCEC 139730269 + 139730249 139730289 41 TGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGGACCAGAAC TGGAGGAGCTGTCAGTGCAGCAGGAGACGGAGGACCAGAAC < 41bp 1 0.785914899634106 1 0.824975371360779 experiment 0.428170200731788 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139730269 chr9:139730262 synonymous SNV . 0 14 hm5C_associated_SNPs_42989 0 0 1 1 139730252 139730273 mRNA hsa-miR-370 C9orf86 miRanda miRanda
4290 chr11 125445274 125445274 1 + G T UCEC 125445260 + 125445240 125445280 41 CGAAGAAGGGCAAGTAGTGTCTTGGCACAGAGAAGAGCCCA CGAAGAAGGGCAAGTAGTGTCTTGGCACAGAGAATAGCCCA < 41bp 1 0.688500536006585 1 0.43730503320694 experiment 0.62299892798683 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EI24 ENSG00000149547 CDS Human protein_coding chr11:125445260 chr11:125445274 stopgain 0.998 4 35 hm5C_associated_SNPs_42992 0 0 1 2 125445263 125445284 mRNA hsa-miR-330-5p EI24 miRanda miRanda
4291 chr11 125445274 125445274 1 + G T UCEC 125445260 + 125445240 125445280 41 CGAAGAAGGGCAAGTAGTGTCTTGGCACAGAGAAGAGCCCA CGAAGAAGGGCAAGTAGTGTCTTGGCACAGAGAATAGCCCA < 41bp 1 0.688500536006585 1 0.43730503320694 experiment 0.62299892798683 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EI24 ENSG00000149547 CDS Human protein_coding chr11:125445260 chr11:125445274 stopgain 0.998 4 35 hm5C_associated_SNPs_42992 0 0 1 2 125445264 125445284 mRNA hsa-miR-326 EI24 miRanda miRanda
4292 chr20 60963513 60963513 1 + G T UCEC 60963516 + 60963496 60963536 41 TTTTCCCCTGGTTCTAGGAACTTTTGACTGGAGAGAATCAC TTTTCCCCTGGTTCTAGTAACTTTTGACTGGAGAGAATCAC < 41bp 1 0.153124052771151 1 0.0490667521953583 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS21 ENSG00000171858 CDS Human protein_coding chr20:60963516 chr20:60963513 nonsynonymous SNV 0.932 1 18 hm5C_associated_SNPs_42997 0 0 1 1 60963497 60963516 mRNA hsa-miR-384 RPS21 miRanda miRanda
4293 chr3 134851693 134851693 1 + C T UCEC 134851688 + 134851668 134851708 41 CATCTGCAAAAAGTGCCGGGCAGACCGCCGGAGCTGCTCCC CATCTGCAAAAAGTGCCGGGCAGACTGCCGGAGCTGCTCCC < 41bp 1 0.138457792124227 1 0.323684096336365 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134851688 chr3:134851693 nonsynonymous SNV 0.993 3 26 hm5C_associated_SNPs_43030 0 0 0 1 134851669 134851693 mRNA hsa-miR-346 EPHB1 miRanda miRanda
4294 chrX 73040666 73040666 1 - A T UCEC 73040659 - 73040639 73040679 41 AAGACTCTTGAACTTGTGAACTGATGTGAAATGCAGAATCT AAGACTCTTGAACATGTGAACTGATGTGAAATGCAGAATCT < 41bp 1 0.153797854378647 1 0.119292885065079 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040659 chrX:73040666 . . 0 14 hm5C_associated_SNPs_43075 0 0 1 1 73040660 73040683 lncRNA hsa-miR-513b-5p XIST miRanda starBase2
4295 chrX 73040666 73040666 1 - A T UCEC 73040667 - 73040647 73040687 41 ATAAATGGAAGACTCTTGAACTTGTGAACTGATGTGAAATG ATAAATGGAAGACTCTTGAACATGTGAACTGATGTGAAATG < 41bp 1 0.107814678645206 1 0.133708208799362 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040667 chrX:73040666 . . 0 22 hm5C_associated_SNPs_43076 0 0 1 1 73040660 73040683 lncRNA hsa-miR-513b-5p XIST miRanda starBase2
4296 chrX 73040666 73040666 1 - A T UCEC 73040673 - 73040653 73040693 41 GCTAAGATAAATGGAAGACTCTTGAACTTGTGAACTGATGT GCTAAGATAAATGGAAGACTCTTGAACATGTGAACTGATGT < 41bp 1 0.343806359739068 1 0.505150556564331 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040673 chrX:73040666 . . 0 28 hm5C_associated_SNPs_43077 0 0 1 1 73040660 73040683 lncRNA hsa-miR-513b-5p XIST miRanda starBase2
4297 chrX 73040666 73040666 1 - A T UCEC 73040675 - 73040655 73040695 41 AAGCTAAGATAAATGGAAGACTCTTGAACTTGTGAACTGAT AAGCTAAGATAAATGGAAGACTCTTGAACATGTGAACTGAT < 41bp 1 0.0760571452349461 1 0.0728810429573059 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040675 chrX:73040666 . . 0 30 hm5C_associated_SNPs_43078 0 0 1 1 73040660 73040683 lncRNA hsa-miR-513b-5p XIST miRanda starBase2
4298 chr5 125820131 125820131 1 + C A UCEC 125820118 + 125820098 125820138 41 CCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGG CCATGCGACAGAATCCCAAACAGTTCTGAATGTATCCAAGG < 41bp 1 0.24510686338492 1 0.109240710735321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125820118 chr5:125820131 synonymous SNV . 0 34 hm5C_associated_SNPs_43100 0 0 0 4 125820109 125820131 mRNA hsa-miR-181a GRAMD3 miRanda miRanda
4299 chr5 125820131 125820131 1 + C A UCEC 125820118 + 125820098 125820138 41 CCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGG CCATGCGACAGAATCCCAAACAGTTCTGAATGTATCCAAGG < 41bp 1 0.24510686338492 1 0.109240710735321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125820118 chr5:125820131 synonymous SNV . 0 34 hm5C_associated_SNPs_43100 0 0 0 4 125820109 125820131 mRNA hsa-miR-181b GRAMD3 miRanda miRanda
4300 chr5 125820131 125820131 1 + C A UCEC 125820118 + 125820098 125820138 41 CCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGG CCATGCGACAGAATCCCAAACAGTTCTGAATGTATCCAAGG < 41bp 1 0.24510686338492 1 0.109240710735321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125820118 chr5:125820131 synonymous SNV . 0 34 hm5C_associated_SNPs_43100 0 0 0 4 125820109 125820131 mRNA hsa-miR-181c GRAMD3 miRanda miRanda
4301 chr5 125820131 125820131 1 + C A UCEC 125820118 + 125820098 125820138 41 CCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGG CCATGCGACAGAATCCCAAACAGTTCTGAATGTATCCAAGG < 41bp 1 0.24510686338492 1 0.109240710735321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125820118 chr5:125820131 synonymous SNV . 0 34 hm5C_associated_SNPs_43100 0 0 0 4 125820109 125820131 mRNA hsa-miR-181d GRAMD3 miRanda miRanda
4302 chr6 30593467 30593467 1 + C A UCEC 30593484 + 30593464 30593504 41 CATCTCCAAGAAGAGAGTGGCCCCCCACCTGAGTCAATGCC CATATCCAAGAAGAGAGTGGCCCCCCACCTGAGTCAATGCC < 41bp 1 0.100241978648727 1 0.0990270376205444 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS18B ENSG00000204568 CDS Human protein_coding chr6:30593484 chr6:30593467 nonsynonymous SNV 0.777 2 4 hm5C_associated_SNPs_43115 0 0 1 1 30593451 30593470 mRNA hsa-miR-143 MRPS18B miRanda miRanda
4303 chr2 37475369 37475369 1 + G T UCEC 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGATA < 41bp 1 0.40909498303059 1 0.480537563562393 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475369 nonsynonymous SNV 0.997 3 40 hm5C_associated_SNPs_43127 0 0 1 1 37475352 37475373 mRNA hsa-miR-216b C2orf56 miRanda miRanda
4304 chr2 37475369 37475369 1 + G T UCEC 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGATAT < 41bp 1 0.421939278003884 1 0.397640526294708 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475369 nonsynonymous SNV 0.997 3 39 hm5C_associated_SNPs_43128 0 0 1 1 37475352 37475373 mRNA hsa-miR-216b C2orf56 miRanda miRanda
4305 chr20 44526710 44526710 1 + G A UCEC 44526703 + 44526683 44526723 41 GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTCTC GACAGCGGGGAGCAGATTGCCGGCTTCATGAAGGAGTTCTC < 41bp 1 0.666038357846928 1 0.704003036022186 experiment 0.667923284306144 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44526703 chr20:44526710 nonsynonymous SNV 0.844 5 28 hm5C_associated_SNPs_43132 0 0 1 2 44526709 44526730 mRNA hsa-miR-299-3p CTSA miRanda miRanda
4306 chr20 44526710 44526710 1 + G A UCEC 44526703 + 44526683 44526723 41 GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTCTC GACAGCGGGGAGCAGATTGCCGGCTTCATGAAGGAGTTCTC < 41bp 1 0.666038357846928 1 0.704003036022186 experiment 0.667923284306144 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44526703 chr20:44526710 nonsynonymous SNV 0.844 5 28 hm5C_associated_SNPs_43132 0 0 1 2 44526706 44526728 mRNA hsa-miR-491-5p CTSA miRanda miRanda
4307 chr10 71855414 71855414 1 + C T UCEC 71855433 + 71855413 71855453 41 TCCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG TTCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG < 41bp 1 0.41790421342264 1 0.223039299249649 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71855433 chr10:71855414 nonsynonymous SNV 0.971 4 2 hm5C_associated_SNPs_43145 0 0 0 2 71855410 71855427 mRNA hsa-miR-330-5p H2AFY2 miRanda miRanda
4308 chr10 71855414 71855414 1 + C T UCEC 71855433 + 71855413 71855453 41 TCCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG TTCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG < 41bp 1 0.41790421342264 1 0.223039299249649 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71855433 chr10:71855414 nonsynonymous SNV 0.971 4 2 hm5C_associated_SNPs_43145 0 0 0 2 71855410 71855427 mRNA hsa-miR-326 H2AFY2 miRanda miRanda
4309 chr1 156202162 156202162 1 + G A UCEC 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCAATGACACAGCAAATCTATGACAAGTTTATA < 41bp 1 0.0943916493808916 1 0.161862403154373 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202162 synonymous SNV . 0 11 hm5C_associated_SNPs_43253 0 0 1 1 156202162 156202183 mRNA hsa-miR-376b PMF1 miRanda miRanda
4310 chr1 28975133 28975133 1 + T A UCEC 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC CTTCTGTCGTGAGAGGCACACGTAGGGCAACTCGATTGCTC < 41bp 1 0.58779622506442 1 0.255649626255035 experiment 0.824407549871159 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975133 . . 0 14 hm5C_associated_SNPs_43341 0 0 1 1 28975112 28975133 mRNA hsa-miR-342-3p RNU11 miRanda miRanda
4311 chrX 73045669 73045669 1 - T C UCEC 73045684 - 73045664 73045704 41 TGGGAAGTTGATTTAAATGACTGATAATGTGTATGAAAGCA TGGGAAGTTGATTTAAATGACTGATAATGTGTATGGAAGCA < 41bp 1 0.065124024444336 1 0.0605373680591583 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045684 chrX:73045669 . . 0 36 hm5C_associated_SNPs_43348 0 0 1 3 73045661 73045682 lncRNA hsa-miR-520f-3p XIST miRanda starBase2
4312 chrX 73045669 73045669 1 - T C UCEC 73045684 - 73045664 73045704 41 TGGGAAGTTGATTTAAATGACTGATAATGTGTATGAAAGCA TGGGAAGTTGATTTAAATGACTGATAATGTGTATGGAAGCA < 41bp 1 0.065124024444336 1 0.0605373680591583 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045684 chrX:73045669 . . 0 36 hm5C_associated_SNPs_43348 0 0 1 3 73045668 73045689 lncRNA hsa-miR-485-3p XIST miRanda starBase2
4313 chrX 73045669 73045669 1 - T C UCEC 73045684 - 73045664 73045704 41 TGGGAAGTTGATTTAAATGACTGATAATGTGTATGAAAGCA TGGGAAGTTGATTTAAATGACTGATAATGTGTATGGAAGCA < 41bp 1 0.065124024444336 1 0.0605373680591583 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045684 chrX:73045669 . . 0 36 hm5C_associated_SNPs_43348 0 0 1 3 73045668 73045689 lncRNA hsa-miR-539-3p XIST miRanda starBase2
4314 chr11 837591 837591 1 + C G UCEC 837583 + 837563 837603 41 CGGTGGTGGCTCTTTGTGGGCAGCGAGACCATGCCTCCAAC CGGTGGTGGCTCTTTGTGGGCAGCGAGAGCATGCCTCCAAC < 41bp 1 0.791687342001968 1 0.277997374534607 experiment 0.416625315996063 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD151 ENSG00000177697 CDS Human protein_coding chr11:837583 chr11:837591 nonsynonymous SNV 0.916 0 29 hm5C_associated_SNPs_43359 0 0 1 1 837578 837600 mRNA hsa-miR-485-5p CD151 miRanda miRanda
4315 chr11 244732 244732 1 + T G UCEC 244747 + 244727 244767 41 TAAAATTAAACATCGGGGACCTACAGGTTACAAAGGTGAGA TAAAAGTAAACATCGGGGACCTACAGGTTACAAAGGTGAGA < 41bp 1 0.335293684061981 1 0.179504692554474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD13 ENSG00000185627 CDS Human protein_coding chr11:244747 chr11:244732 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_43384 0 0 1 1 244714 244734 mRNA hsa-miR-590-3p PSMD13 miRanda miRanda
4316 chr6 31593365 31593365 1 + T C UCEC 31593346 + 31593326 31593366 41 GGTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTA GGTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCA < 41bp 1 0.221976513151579 1 0.064331442117691 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593346 chr6:31593365 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_43418 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
4317 chr6 31593365 31593365 1 + T C UCEC 31593347 + 31593327 31593367 41 GTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTAC GTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCAC < 41bp 1 0.162167109191247 1 0.0985339879989624 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593347 chr6:31593365 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_43419 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
4318 chr6 31593365 31593365 1 + T C UCEC 31593348 + 31593328 31593368 41 TGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACC TGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCACC < 41bp 1 0.272825118414368 1 0.0827682912349701 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593348 chr6:31593365 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_43420 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
4319 chr6 31593365 31593365 1 + T C UCEC 31593350 + 31593330 31593370 41 GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGC GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCACCGC < 41bp 1 0.592297399667199 1 0.354897022247314 experiment 0.815405200665601 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593350 chr6:31593365 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_43421 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
4320 chr6 31593365 31593365 1 + T C UCEC 31593351 + 31593331 31593371 41 GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCACCGCG < 41bp 1 0.389244006537744 1 0.125841170549393 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593351 chr6:31593365 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_43422 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
4321 chr6 31593365 31593365 1 + T C UCEC 31593352 + 31593332 31593372 41 CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCACCGCGG < 41bp 1 0.356399506881867 1 0.149693250656128 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593352 chr6:31593365 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_43423 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
4322 chr6 31593365 31593365 1 + T C UCEC 31593353 + 31593333 31593373 41 TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCACCGCGGA < 41bp 1 0.308111394465683 1 0.435111731290817 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593353 chr6:31593365 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_43424 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
4323 chr10 93713510 93713510 1 + A C UCEC 93713504 + 93713484 93713524 41 ATTCTTTTAGACTCTTCAGGCAGCTGAATTGATTGACTCAG ATTCTTTTAGACTCTTCAGGCAGCTGCATTGATTGACTCAG < 41bp 1 0.311959756668399 1 0.54978221654892 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93713504 chr10:93713510 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_43442 0 0 1 1 93713497 93713521 mRNA hsa-miR-505 BTAF1 miRanda miRanda
4324 chr1 236347187 236347187 1 + G T UCEC 236347193 + 236347173 236347213 41 TTTCTTCCGAGTTAGAAATCCTACAAAGGACCTTGTAAGTA TTTCTTCCGAGTTATAAATCCTACAAAGGACCTTGTAAGTA < 41bp 1 0.616696752792456 1 0.232986807823181 experiment 0.766606494415089 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPR137B ENSG00000077585 CDS Human protein_coding chr1:236347193 chr1:236347187 nonsynonymous SNV 0.847 4 15 hm5C_associated_SNPs_43457 0 0 1 1 236347171 236347194 mRNA hsa-miR-876-5p GPR137B miRanda miRanda
4325 chr10 101515437 101515437 1 + G T UCEC 101515429 + 101515409 101515449 41 ACTTTCTTGCTCAGAATATTCCCTAAAGGTAACAGATGTGA ACTTTCTTGCTCAGAATATTCCCTAAAGTTAACAGATGTGA < 41bp 1 0.400543321185126 1 0.151019334793091 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUTC ENSG00000119929 CDS Human protein_coding chr10:101515429 chr10:101515437 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_43510 0 0 1 3 101515430 101515450 mRNA hsa-miR-23a CUTC miRanda miRanda
4326 chr10 101515437 101515437 1 + G T UCEC 101515429 + 101515409 101515449 41 ACTTTCTTGCTCAGAATATTCCCTAAAGGTAACAGATGTGA ACTTTCTTGCTCAGAATATTCCCTAAAGTTAACAGATGTGA < 41bp 1 0.400543321185126 1 0.151019334793091 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUTC ENSG00000119929 CDS Human protein_coding chr10:101515429 chr10:101515437 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_43510 0 0 1 3 101515423 101515450 mRNA hsa-miR-23b CUTC miRanda miRanda
4327 chr10 101515437 101515437 1 + G T UCEC 101515429 + 101515409 101515449 41 ACTTTCTTGCTCAGAATATTCCCTAAAGGTAACAGATGTGA ACTTTCTTGCTCAGAATATTCCCTAAAGTTAACAGATGTGA < 41bp 1 0.400543321185126 1 0.151019334793091 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUTC ENSG00000119929 CDS Human protein_coding chr10:101515429 chr10:101515437 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_43510 0 0 1 3 101515436 101515456 mRNA hsa-miR-9 CUTC miRanda miRanda
4328 chr18 13095639 13095639 1 + C T UCEC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.170361069142159 1 0.0963205695152283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095639 nonsynonymous SNV 0.003 1 7 hm5C_associated_SNPs_43532 0 0 1 11 13095636 13095658 mRNA hsa-miR-302a CEP192 miRanda miRanda
4329 chr18 13095639 13095639 1 + C T UCEC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.170361069142159 1 0.0963205695152283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095639 nonsynonymous SNV 0.003 1 7 hm5C_associated_SNPs_43532 0 0 1 11 13095636 13095658 mRNA hsa-miR-302b CEP192 miRanda miRanda
4330 chr18 13095639 13095639 1 + C T UCEC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.170361069142159 1 0.0963205695152283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095639 nonsynonymous SNV 0.003 1 7 hm5C_associated_SNPs_43532 0 0 1 11 13095636 13095658 mRNA hsa-miR-302c CEP192 miRanda miRanda
4331 chr18 13095639 13095639 1 + C T UCEC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.170361069142159 1 0.0963205695152283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095639 nonsynonymous SNV 0.003 1 7 hm5C_associated_SNPs_43532 0 0 1 11 13095636 13095658 mRNA hsa-miR-302d CEP192 miRanda miRanda
4332 chr18 13095639 13095639 1 + C T UCEC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.170361069142159 1 0.0963205695152283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095639 nonsynonymous SNV 0.003 1 7 hm5C_associated_SNPs_43532 0 0 1 11 13095637 13095658 mRNA hsa-miR-372 CEP192 miRanda miRanda
4333 chr18 13095639 13095639 1 + C T UCEC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.170361069142159 1 0.0963205695152283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095639 nonsynonymous SNV 0.003 1 7 hm5C_associated_SNPs_43532 0 0 1 11 13095636 13095658 mRNA hsa-miR-373 CEP192 miRanda miRanda
4334 chr18 13095639 13095639 1 + C T UCEC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.170361069142159 1 0.0963205695152283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095639 nonsynonymous SNV 0.003 1 7 hm5C_associated_SNPs_43532 0 0 1 11 13095638 13095658 mRNA hsa-miR-520e CEP192 miRanda miRanda
4335 chr18 13095639 13095639 1 + C T UCEC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.170361069142159 1 0.0963205695152283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095639 nonsynonymous SNV 0.003 1 7 hm5C_associated_SNPs_43532 0 0 1 11 13095638 13095658 mRNA hsa-miR-520a-3p CEP192 miRanda miRanda
4336 chr18 13095639 13095639 1 + C T UCEC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.170361069142159 1 0.0963205695152283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095639 nonsynonymous SNV 0.003 1 7 hm5C_associated_SNPs_43532 0 0 1 11 13095638 13095658 mRNA hsa-miR-520b CEP192 miRanda miRanda
4337 chr18 13095639 13095639 1 + C T UCEC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.170361069142159 1 0.0963205695152283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095639 nonsynonymous SNV 0.003 1 7 hm5C_associated_SNPs_43532 0 0 1 11 13095637 13095658 mRNA hsa-miR-520c-3p CEP192 miRanda miRanda
4338 chr18 13095639 13095639 1 + C T UCEC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.170361069142159 1 0.0963205695152283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095639 nonsynonymous SNV 0.003 1 7 hm5C_associated_SNPs_43532 0 0 1 11 13095637 13095658 mRNA hsa-miR-520d-3p CEP192 miRanda miRanda
4339 chr18 13095639 13095639 1 + C T UCEC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.579630832732494 1 0.149724245071411 experiment 0.840738334535013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095639 nonsynonymous SNV 0.003 1 5 hm5C_associated_SNPs_43533 0 0 1 11 13095636 13095658 mRNA hsa-miR-302a CEP192 miRanda miRanda
4340 chr18 13095639 13095639 1 + C T UCEC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.579630832732494 1 0.149724245071411 experiment 0.840738334535013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095639 nonsynonymous SNV 0.003 1 5 hm5C_associated_SNPs_43533 0 0 1 11 13095636 13095658 mRNA hsa-miR-302b CEP192 miRanda miRanda
4341 chr18 13095639 13095639 1 + C T UCEC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.579630832732494 1 0.149724245071411 experiment 0.840738334535013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095639 nonsynonymous SNV 0.003 1 5 hm5C_associated_SNPs_43533 0 0 1 11 13095636 13095658 mRNA hsa-miR-302c CEP192 miRanda miRanda
4342 chr18 13095639 13095639 1 + C T UCEC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.579630832732494 1 0.149724245071411 experiment 0.840738334535013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095639 nonsynonymous SNV 0.003 1 5 hm5C_associated_SNPs_43533 0 0 1 11 13095636 13095658 mRNA hsa-miR-302d CEP192 miRanda miRanda
4343 chr18 13095639 13095639 1 + C T UCEC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.579630832732494 1 0.149724245071411 experiment 0.840738334535013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095639 nonsynonymous SNV 0.003 1 5 hm5C_associated_SNPs_43533 0 0 1 11 13095637 13095658 mRNA hsa-miR-372 CEP192 miRanda miRanda
4344 chr18 13095639 13095639 1 + C T UCEC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.579630832732494 1 0.149724245071411 experiment 0.840738334535013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095639 nonsynonymous SNV 0.003 1 5 hm5C_associated_SNPs_43533 0 0 1 11 13095636 13095658 mRNA hsa-miR-373 CEP192 miRanda miRanda
4345 chr18 13095639 13095639 1 + C T UCEC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.579630832732494 1 0.149724245071411 experiment 0.840738334535013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095639 nonsynonymous SNV 0.003 1 5 hm5C_associated_SNPs_43533 0 0 1 11 13095638 13095658 mRNA hsa-miR-520e CEP192 miRanda miRanda
4346 chr18 13095639 13095639 1 + C T UCEC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.579630832732494 1 0.149724245071411 experiment 0.840738334535013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095639 nonsynonymous SNV 0.003 1 5 hm5C_associated_SNPs_43533 0 0 1 11 13095638 13095658 mRNA hsa-miR-520a-3p CEP192 miRanda miRanda
4347 chr18 13095639 13095639 1 + C T UCEC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.579630832732494 1 0.149724245071411 experiment 0.840738334535013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095639 nonsynonymous SNV 0.003 1 5 hm5C_associated_SNPs_43533 0 0 1 11 13095638 13095658 mRNA hsa-miR-520b CEP192 miRanda miRanda
4348 chr18 13095639 13095639 1 + C T UCEC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.579630832732494 1 0.149724245071411 experiment 0.840738334535013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095639 nonsynonymous SNV 0.003 1 5 hm5C_associated_SNPs_43533 0 0 1 11 13095637 13095658 mRNA hsa-miR-520c-3p CEP192 miRanda miRanda
4349 chr18 13095639 13095639 1 + C T UCEC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.579630832732494 1 0.149724245071411 experiment 0.840738334535013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095639 nonsynonymous SNV 0.003 1 5 hm5C_associated_SNPs_43533 0 0 1 11 13095637 13095658 mRNA hsa-miR-520d-3p CEP192 miRanda miRanda
4350 chr21 33032090 33032090 1 + C T UCEC 33032103 + 33032083 33032123 41 ATGGCGACGAAGGCCGTGTGCGTGCTGAAGGGCGACGGCCC ATGGCGATGAAGGCCGTGTGCGTGCTGAAGGGCGACGGCCC < 41bp 1 0.742323105758216 1 0.199099600315094 experiment 0.515353788483569 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOD1 ENSG00000142168 CDS Human protein_coding chr21:33032103 chr21:33032090 nonsynonymous SNV 0.696 1 8 hm5C_associated_SNPs_43565 0 0 1 1 33032088 33032109 mRNA hsa-miR-497 SOD1 miRanda miRanda
4351 chr20 44522629 44522629 1 + T C UCEC 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCCTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.1598584421295 1 0.932987987995148 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522629 nonsynonymous SNV 0.939 5 7 hm5C_associated_SNPs_43592 0 0 1 1 44522627 44522644 mRNA hsa-miR-185 CTSA miRanda miRanda
4352 chr1 155028674 155028674 1 + G A UCEC 155028667 + 155028647 155028687 41 TCACCCTCGAAAACTTCCTCCACTGGCGCAGGGCACATTTG TCACCCTCGAAAACTTCCTCCACTGGCACAGGGCACATTTG < 41bp 1 0.390774405065076 1 0.195888191461563 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155028667 chr1:155028674 nonsynonymous SNV 0.886 4 28 hm5C_associated_SNPs_43599 0 0 0 2 155028664 155028685 mRNA hsa-miR-455-5p ADAM15 miRanda miRanda
4353 chr1 155028674 155028674 1 + G A UCEC 155028667 + 155028647 155028687 41 TCACCCTCGAAAACTTCCTCCACTGGCGCAGGGCACATTTG TCACCCTCGAAAACTTCCTCCACTGGCACAGGGCACATTTG < 41bp 1 0.390774405065076 1 0.195888191461563 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155028667 chr1:155028674 nonsynonymous SNV 0.886 4 28 hm5C_associated_SNPs_43599 0 0 0 2 155028660 155028682 mRNA hsa-miR-874 ADAM15 miRanda miRanda
4354 chr8 107754460 107754460 1 + C T UCEC 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTGGTGTGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC < 41bp 1 0.0632397625413394 1 0.0742046236991882 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754460 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_43655 0 0 0 1 107754455 107754476 mRNA hsa-miR-24 OXR1 miRanda miRanda
4355 chr8 107754460 107754460 1 + C T UCEC 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TGGTGTGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT < 41bp 1 0.161229795219191 1 0.092203289270401 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754460 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_43656 0 0 0 1 107754455 107754476 mRNA hsa-miR-24 OXR1 miRanda miRanda
4356 chr17 35346649 35346649 1 + G A UCEC 35346663 + 35346643 35346683 41 TCTATCGAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCT TCTATCAAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCT < 41bp 1 0.643172320718985 1 0.0609728395938873 experiment 0.713655358562029 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AATF ENSG00000108270 CDS Human other chr17:35346663 chr17:35346649 nonsynonymous SNV 0.997 1 7 hm5C_associated_SNPs_43674 0 0 1 1 35346649 35346671 mRNA hsa-miR-24 AATF miRanda miRanda
4357 chr22 32188025 32188025 1 + A G UCEC 32188034 + 32188014 32188054 41 CTTAGGAGAAGAACTGTAGTCATGAAGTGACAGTGGTCCTG CTTAGGAGAAGGACTGTAGTCATGAAGTGACAGTGGTCCTG < 41bp 1 0.65577080870555 1 0.255634337663651 experiment 0.6884583825889 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32188034 chr22:32188025 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_43702 0 0 1 1 32188019 32188033 mRNA hsa-miR-139-5p DEPDC5 miRanda miRanda
4358 chr20 30157017 30157017 1 + A T UCEC 30157025 + 30157005 30157045 41 GAGAAGAAAGAGAAATGATGCAGCTGGTGCCCGAGCCTCTC GAGAAGAAAGAGTAATGATGCAGCTGGTGCCCGAGCCTCTC < 41bp 1 0.705767819130014 1 0.47791850566864 experiment 0.588464361739971 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HM13 ENSG00000101294 CDS Human protein_coding chr20:30157025 chr20:30157017 stopgain 0.733 0 13 hm5C_associated_SNPs_43723 0 0 1 1 30157009 30157031 mRNA hsa-miR-148b HM13 miRanda miRanda
4359 chr12 31247735 31247735 1 + C T UCEC 31247744 + 31247724 31247764 41 CAGAGCCAGATCGACAACATCAACCTGTTCAAGGTAGAGGT CAGAGCCAGATTGACAACATCAACCTGTTCAAGGTAGAGGT < 41bp 1 0.151322648060891 1 0.059501439332962 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31247744 chr12:31247735 synonymous SNV . 0 12 hm5C_associated_SNPs_43770 0 0 0 1 31247729 31247751 mRNA hsa-miR-125a-3p DDX11 miRanda miRanda
4360 chr11 61725743 61725743 1 + G C UCEC 61725725 + 61725705 61725745 41 GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGTT GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCACTT < 41bp 1 0.252999790018092 1 0.191117525100708 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61725725 chr11:61725743 nonsynonymous SNV 0.998 5 39 hm5C_associated_SNPs_43777 0 0 0 1 61725736 61725758 mRNA hsa-miR-376c BEST1 miRanda miRanda
4361 chr6 44116545 44116545 1 + C T UCEC 44116536 + 44116516 44116556 41 CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCATC CCCACCTTGCCAGGGAGCACCTCTCCATCTGAGGCTTCATC < 41bp 1 0.0811494497716061 1 0.280007869005203 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116536 chr6:44116545 stopgain 1.000 1 30 hm5C_associated_SNPs_43867 0 0 1 3 44116541 44116565 mRNA hsa-miR-29a TMEM63B miRanda miRanda
4362 chr6 44116545 44116545 1 + C T UCEC 44116536 + 44116516 44116556 41 CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCATC CCCACCTTGCCAGGGAGCACCTCTCCATCTGAGGCTTCATC < 41bp 1 0.0811494497716061 1 0.280007869005203 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116536 chr6:44116545 stopgain 1.000 1 30 hm5C_associated_SNPs_43867 0 0 1 3 44116542 44116565 mRNA hsa-miR-29b TMEM63B miRanda miRanda
4363 chr6 44116545 44116545 1 + C T UCEC 44116536 + 44116516 44116556 41 CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCATC CCCACCTTGCCAGGGAGCACCTCTCCATCTGAGGCTTCATC < 41bp 1 0.0811494497716061 1 0.280007869005203 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116536 chr6:44116545 stopgain 1.000 1 30 hm5C_associated_SNPs_43867 0 0 1 3 44116541 44116565 mRNA hsa-miR-29c TMEM63B miRanda miRanda
4364 chr7 77214887 77214887 1 + G C UCEC 77214877 + 77214857 77214897 41 TAGATCATTGTAATGGCCTGCCGAGAATTTGAGATGGGAAG TAGATCATTGTAATGGCCTGCCGAGAATTTCAGATGGGAAG < 41bp 1 0.135545061589758 1 0.562607824802399 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77214877 chr7:77214887 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_43926 0 0 1 1 77214868 77214893 mRNA hsa-miR-216a PTPN12 miRanda miRanda
4365 chr16 22019662 22019662 1 + G A UCEC 22019663 + 22019643 22019683 41 CTCAGGATGTCTCTTTCTGGCCGCCGATATCTTCGCCATCG CTCAGGATGTCTCTTTCTGACCGCCGATATCTTCGCCATCG < 41bp 1 0.513417443271838 1 0.04585200548172 experiment 0.973165113456323 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C16orf52 ENSG00000185716 CDS Human protein_coding chr16:22019663 chr16:22019662 nonsynonymous SNV 0.998 0 20 hm5C_associated_SNPs_43961 0 0 1 1 22019659 22019680 mRNA hsa-miR-31 C16orf52 miRanda miRanda
4366 chr22 19707367 19707367 1 + C A UCEC 19707377 + 19707357 19707397 41 GGTCCACAGCCTCTTCCTGACAGACTTGTACAAGGACCGGA GGTCCACAGCATCTTCCTGACAGACTTGTACAAGGACCGGA < 41bp 1 0.257819061709238 1 0.089176207780838 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19707377 chr22:19707367 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_43969 0 0 0 1 19707345 19707370 mRNA hsa-miR-485-5p SEPT5 miRanda miRanda
4367 chr19 13054600 13054600 1 + G A UCEC 13054601 + 13054581 13054621 41 GAGGAAGAAGACAAGAAACGCAAAGAGGAGGAGGAGGCAGA GAGGAAGAAGACAAGAAACACAAAGAGGAGGAGGAGGCAGA < 41bp 1 0.583573292191997 1 0.576082766056061 experiment 0.832853415616006 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13054601 chr19:13054600 nonsynonymous SNV 0.995 0 20 hm5C_associated_SNPs_43985 0 0 1 1 13054588 13054610 mRNA hsa-miR-211 CALR miRanda miRanda
4368 chr17 35310490 35310490 1 + C T UCEC 35310470 + 35310450 35310490 41 GGGATGACGCGGAAGACTCCCAAGGCGAGAGTGAGGAAGAC GGGATGACGCGGAAGACTCCCAAGGCGAGAGTGAGGAAGAT < 41bp 1 0.735060040636619 1 0.631352663040161 experiment 0.529879918726761 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AATF ENSG00000108270 CDS Human other chr17:35310470 chr17:35310490 synonymous SNV . 0 41 hm5C_associated_SNPs_43987 0 0 1 1 35310473 35310495 mRNA hsa-miR-339-5p AATF miRanda miRanda
4369 chr1 76255000 76255000 1 + G A UCEC 76255012 + 76254992 76255032 41 CTAGTATCGGACATGATCCTCATCTTTTATACACTCTTAGT CTAGTATCAGACATGATCCTCATCTTTTATACACTCTTAGT < 41bp 1 0.199563790815449 1 0.0490074157714844 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255012 chr1:76255000 nonsynonymous SNV 0.993 2 9 hm5C_associated_SNPs_43990 0 0 1 2 76254987 76255010 mRNA hsa-miR-190 RABGGTB miRanda miRanda
4370 chr1 76255000 76255000 1 + G A UCEC 76255012 + 76254992 76255032 41 CTAGTATCGGACATGATCCTCATCTTTTATACACTCTTAGT CTAGTATCAGACATGATCCTCATCTTTTATACACTCTTAGT < 41bp 1 0.199563790815449 1 0.0490074157714844 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255012 chr1:76255000 nonsynonymous SNV 0.993 2 9 hm5C_associated_SNPs_43990 0 0 1 2 76254989 76255010 mRNA hsa-miR-190b RABGGTB miRanda miRanda
4371 chr11 986878 986878 1 + G A UCEC 986875 + 986855 986895 41 CGCTACCTGGCCCTGGAGAGCATGTGCACGCTGGCCAGCTC CGCTACCTGGCCCTGGAGAGCATATGCACGCTGGCCAGCTC < 41bp 1 0.196010040881724 1 0.329761862754822 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:986875 chr11:986878 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_44004 0 0 1 1 986872 986895 mRNA hsa-miR-22 AP2A2 miRanda miRanda
4372 chr20 57289028 57289028 1 + A C UCEC 57289032 + 57289012 57289052 41 AACAGCGCTGAGTGGGAGGCCGCCTGTGTGAAGGCGGGCAG AACAGCGCTGAGTGGGCGGCCGCCTGTGTGAAGGCGGGCAG < 41bp 1 0.754576834342239 1 0.597207188606262 experiment 0.490846331315521 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289032 chr20:57289028 nonsynonymous SNV 0.843 4 17 hm5C_associated_SNPs_44065 0 0 1 1 57289024 57289043 mRNA hsa-miR-377 NPEPL1 miRanda miRanda
4373 chr12 95879657 95879657 1 + A G UCEC 95879655 + 95879635 95879675 41 GCTTTATTTGTATCTCACAGCAAAAGTTCAAACAGACCCTC GCTTTATTTGTATCTCACAGCAGAAGTTCAAACAGACCCTC < 41bp 1 0.688721574841233 1 0.51702892780304 experiment 0.622556850317534 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95879655 chr12:95879657 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_44116 0 0 1 2 95879655 95879658 mRNA hsa-miR-133a METAP2 miRanda miRanda
4374 chr12 95879657 95879657 1 + A G UCEC 95879655 + 95879635 95879675 41 GCTTTATTTGTATCTCACAGCAAAAGTTCAAACAGACCCTC GCTTTATTTGTATCTCACAGCAGAAGTTCAAACAGACCCTC < 41bp 1 0.688721574841233 1 0.51702892780304 experiment 0.622556850317534 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95879655 chr12:95879657 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_44116 0 0 1 2 95879655 95879658 mRNA hsa-miR-133b METAP2 miRanda miRanda
4375 chrX 48759681 48759681 1 + G A UCEC 48759667 + 48759647 48759687 41 CGTGGCTATGACAAGGTAGACAGAGAGAGAGAGCGAGACAG CGTGGCTATGACAAGGTAGACAGAGAGAGAGAGCAAGACAG < 41bp 1 0.78383943972071 1 0.624300122261047 experiment 0.432321120558579 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759667 chrX:48759681 nonsynonymous SNV 0.991 1 35 hm5C_associated_SNPs_44134 0 0 1 1 48759669 48759690 mRNA hsa-miR-339-5p PQBP1 miRanda miRanda
4376 chr2 157407222 157407222 1 + G A UCEC 157407233 + 157407213 157407253 41 GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGGTTAT GCCAGCCAAATGCTGGTGTCCATATTGTGATGCCTGGTTAT < 41bp 1 0.136239676333214 1 0.0697313249111176 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407233 chr2:157407222 nonsynonymous SNV 0.486 3 10 hm5C_associated_SNPs_44147 0 0 1 1 157407213 157407236 mRNA hsa-miR-425 GPD2 miRanda miRanda
4377 chrX 73046589 73046589 1 - C A UCEC 73046585 - 73046565 73046605 41 TACCTAGATGGATAGAGGACCCAAGCGAAAAAGGTATCTCA TACCTAGATGGATAGATGACCCAAGCGAAAAAGGTATCTCA < 41bp 1 0.10650677162071 1 0.245333135128021 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046585 chrX:73046589 . . 0 17 hm5C_associated_SNPs_44159 0 0 1 2 73046585 73046606 lncRNA hsa-miR-3909 XIST miRanda starBase2
4378 chrX 73046589 73046589 1 - C A UCEC 73046585 - 73046565 73046605 41 TACCTAGATGGATAGAGGACCCAAGCGAAAAAGGTATCTCA TACCTAGATGGATAGATGACCCAAGCGAAAAAGGTATCTCA < 41bp 1 0.10650677162071 1 0.245333135128021 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046585 chrX:73046589 . . 0 17 hm5C_associated_SNPs_44159 0 0 1 2 73046585 73046601 lncRNA hsa-miR-6852-3p XIST miRanda starBase2
4379 chrX 73046589 73046589 1 - C A UCEC 73046606 - 73046586 73046626 41 GAAGGCCCCTGTCACAAAGCCTACCTAGATGGATAGAGGAC GAAGGCCCCTGTCACAAAGCCTACCTAGATGGATAGATGAC < 41bp 1 0.0923852401384065 1 0.0684517920017242 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046606 chrX:73046589 . . 0 38 hm5C_associated_SNPs_44160 0 0 1 2 73046585 73046606 lncRNA hsa-miR-3909 XIST miRanda starBase2
4380 chrX 73046589 73046589 1 - C A UCEC 73046606 - 73046586 73046626 41 GAAGGCCCCTGTCACAAAGCCTACCTAGATGGATAGAGGAC GAAGGCCCCTGTCACAAAGCCTACCTAGATGGATAGATGAC < 41bp 1 0.0923852401384065 1 0.0684517920017242 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046606 chrX:73046589 . . 0 38 hm5C_associated_SNPs_44160 0 0 1 2 73046585 73046601 lncRNA hsa-miR-6852-3p XIST miRanda starBase2
4381 chr6 133137664 133137664 1 + G A UCEC 133137682 + 133137662 133137702 41 TGGAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAG TGAAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAG < 41bp 1 0.788058361990758 1 0.072683721780777 experiment 0.423883276018485 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137682 chr6:133137664 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_44175 0 0 1 1 133137659 133137681 mRNA hsa-miR-377 SNORA33 miRanda miRanda
4382 chr6 133137664 133137664 1 + G A UCEC 133137684 + 133137664 133137704 41 GAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAGGT AAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAGGT < 41bp 1 0.470268680126166 1 0.396497160196304 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137684 chr6:133137664 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_44176 0 0 1 1 133137659 133137681 mRNA hsa-miR-377 SNORA33 miRanda miRanda
4383 chr21 46624580 46624580 1 + C T UCEC 46624567 + 46624547 46624587 41 GCAGCCTTTACCACGGGGACCACCTTTCCAGGGCCATGTAC GCAGCCTTTACCACGGGGACCACCTTTCCAGGGTCATGTAC < 41bp 1 0.334441664930867 1 0.0968383252620697 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46624567 chr21:46624580 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_44262 0 0 0 1 46624563 46624586 mRNA hsa-miR-193b ADARB1 miRanda miRanda
4384 chr9 140002990 140002990 1 + G A UCEC 140002991 + 140002971 140003011 41 AAACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAG AAACCTGCTCAGCCTGGATACCTACGTGTTCAACACCGAAG < 41bp 1 0.0564913690182473 1 0.135922700166702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002991 chr9:140002990 nonsynonymous SNV 0.430 1 20 hm5C_associated_SNPs_44280 0 0 1 1 140002985 140003006 mRNA hsa-miR-653 MAN1B1 miRanda miRanda
4385 chr9 140002990 140002990 1 + G A UCEC 140002992 + 140002972 140003012 41 AACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAGC AACCTGCTCAGCCTGGATACCTACGTGTTCAACACCGAAGC < 41bp 1 0.567948441756043 1 0.0895808041095734 experiment 0.864103116487914 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002992 chr9:140002990 nonsynonymous SNV 0.430 1 19 hm5C_associated_SNPs_44281 0 0 1 1 140002985 140003006 mRNA hsa-miR-653 MAN1B1 miRanda miRanda
4386 chrX 73044235 73044235 1 - G A UCEC 73044221 - 73044201 73044241 41 AAGGCACCATATAAATGTAACTGTTGATTTTCTCACTTGGT AAGGCATCATATAAATGTAACTGTTGATTTTCTCACTTGGT < 41bp 1 0.0279303697681224 1 0.125934332609177 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044221 chrX:73044235 . . 0 7 hm5C_associated_SNPs_44313 0 0 1 1 73044214 73044240 lncRNA hsa-miR-421 XIST miRanda starBase2
4387 chr1 109643194 109643194 1 + C A UCEC 109643189 + 109643169 109643209 41 AATTGATCAGATAGACGAGGCCGGGCTTGTCCCCGGCCACT AATTGATCAGATAGACGAGGCCGGGATTGTCCCCGGCCACT < 41bp 1 0.498885577053546 1 0.15234899520874 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643189 chr1:109643194 . . 0 26 hm5C_associated_SNPs_44342 0 0 1 1 109643175 109643196 lncRNA hsa-miR-3940-3p AL356488.2 miRanda starBase2
4388 chr1 109643194 109643194 1 + C A UCEC 109643199 + 109643179 109643219 41 ATAGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAG ATAGACGAGGCCGGGATTGTCCCCGGCCACTGATTATCGAG < 41bp 1 0.713243346018456 1 0.43705341219902 experiment 0.573513307963089 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643199 chr1:109643194 . . 0 16 hm5C_associated_SNPs_44343 0 0 1 1 109643175 109643196 lncRNA hsa-miR-3940-3p AL356488.2 miRanda starBase2
4389 chr1 109643194 109643194 1 + C A UCEC 109643200 + 109643180 109643220 41 TAGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGG TAGACGAGGCCGGGATTGTCCCCGGCCACTGATTATCGAGG < 41bp 1 0.534843978615166 1 0.513755857944489 experiment 0.930312042769669 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643200 chr1:109643194 . . 0 15 hm5C_associated_SNPs_44344 0 0 1 1 109643175 109643196 lncRNA hsa-miR-3940-3p AL356488.2 miRanda starBase2
4390 chr1 109643194 109643194 1 + C A UCEC 109643201 + 109643181 109643221 41 AGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGC AGACGAGGCCGGGATTGTCCCCGGCCACTGATTATCGAGGC < 41bp 1 0.567225381410709 1 0.888897657394409 experiment 0.865549237178583 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643201 chr1:109643194 . . 0 14 hm5C_associated_SNPs_44345 0 0 1 1 109643175 109643196 lncRNA hsa-miR-3940-3p AL356488.2 miRanda starBase2
4391 chr1 109643194 109643194 1 + C A UCEC 109643202 + 109643182 109643222 41 GACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCG GACGAGGCCGGGATTGTCCCCGGCCACTGATTATCGAGGCG < 41bp 1 0.403690613349735 1 0.716338574886322 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643202 chr1:109643194 . . 0 13 hm5C_associated_SNPs_44346 0 0 1 1 109643175 109643196 lncRNA hsa-miR-3940-3p AL356488.2 miRanda starBase2
4392 chr1 109643194 109643194 1 + C A UCEC 109643205 + 109643185 109643225 41 GAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCGATT GAGGCCGGGATTGTCCCCGGCCACTGATTATCGAGGCGATT < 41bp 1 0.0682342619262087 1 0.0406433343887329 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643205 chr1:109643194 . . 0 10 hm5C_associated_SNPs_44347 0 0 1 1 109643175 109643196 lncRNA hsa-miR-3940-3p AL356488.2 miRanda starBase2
4393 chr1 109643194 109643194 1 + C A UCEC 109643206 + 109643186 109643226 41 AGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCGATTC AGGCCGGGATTGTCCCCGGCCACTGATTATCGAGGCGATTC < 41bp 1 0.363244927580752 1 0.029891312122345 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643206 chr1:109643194 . . 0 9 hm5C_associated_SNPs_44348 0 0 1 1 109643175 109643196 lncRNA hsa-miR-3940-3p AL356488.2 miRanda starBase2
4394 chr1 109643194 109643194 1 + C A UCEC 109643208 + 109643188 109643228 41 GCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCGATTCTG GCCGGGATTGTCCCCGGCCACTGATTATCGAGGCGATTCTG < 41bp 1 0.566551699856188 1 0.119059324264526 experiment 0.866896600287625 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643208 chr1:109643194 . . 0 7 hm5C_associated_SNPs_44349 0 0 1 1 109643175 109643196 lncRNA hsa-miR-3940-3p AL356488.2 miRanda starBase2
4395 chrX 73046503 73046503 1 - C A UCEC 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAATACCTGGGGAAATCCCAAGATGAGAACCCTAAAC < 41bp 1 0.567996884311478 1 0.612966418266296 experiment 0.864006231377044 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046503 . . 0 8 hm5C_associated_SNPs_44372 0 0 1 4 73046493 73046513 lncRNA hsa-miR-2355-5p XIST miRanda starBase2
4396 chrX 73046503 73046503 1 - C A UCEC 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAATACCTGGGGAAATCCCAAGATGAGAACCCTAAAC < 41bp 1 0.567996884311478 1 0.612966418266296 experiment 0.864006231377044 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046503 . . 0 8 hm5C_associated_SNPs_44372 0 0 1 4 73046503 73046525 lncRNA hsa-miR-498 XIST miRanda starBase2
4397 chrX 73046503 73046503 1 - C A UCEC 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAATACCTGGGGAAATCCCAAGATGAGAACCCTAAAC < 41bp 1 0.567996884311478 1 0.612966418266296 experiment 0.864006231377044 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046503 . . 0 8 hm5C_associated_SNPs_44372 0 0 1 4 73046488 73046509 lncRNA hsa-miR-3167 XIST miRanda starBase2
4398 chrX 73046503 73046503 1 - C A UCEC 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAATACCTGGGGAAATCCCAAGATGAGAACCCTAAAC < 41bp 1 0.567996884311478 1 0.612966418266296 experiment 0.864006231377044 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046503 . . 0 8 hm5C_associated_SNPs_44372 0 0 1 4 73046488 73046509 lncRNA hsa-miR-876-5p XIST miRanda starBase2
4399 chr5 37697813 37697813 1 + C T UCEC 37697804 + 37697784 37697824 41 GCTCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTC GCTCATGACTCGGGCACAGACACTTCTTGTGTGACTTTTTC < 41bp 1 0.335002559495842 1 0.0826710760593414 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697804 chr5:37697813 synonymous SNV . 0 30 hm5C_associated_SNPs_44402 0 0 0 2 37697796 37697815 mRNA hsa-miR-31 WDR70 miRanda miRanda
4400 chr5 37697813 37697813 1 + C T UCEC 37697804 + 37697784 37697824 41 GCTCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTC GCTCATGACTCGGGCACAGACACTTCTTGTGTGACTTTTTC < 41bp 1 0.335002559495842 1 0.0826710760593414 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697804 chr5:37697813 synonymous SNV . 0 30 hm5C_associated_SNPs_44402 0 0 0 2 37697798 37697821 mRNA hsa-miR-224 WDR70 miRanda miRanda
4401 chr5 37697813 37697813 1 + C T UCEC 37697806 + 37697786 37697826 41 TCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTCCT TCATGACTCGGGCACAGACACTTCTTGTGTGACTTTTTCCT < 41bp 1 0.245449835794637 1 0.149654179811478 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697806 chr5:37697813 synonymous SNV . 0 28 hm5C_associated_SNPs_44403 0 0 0 2 37697796 37697815 mRNA hsa-miR-31 WDR70 miRanda miRanda
4402 chr5 37697813 37697813 1 + C T UCEC 37697806 + 37697786 37697826 41 TCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTCCT TCATGACTCGGGCACAGACACTTCTTGTGTGACTTTTTCCT < 41bp 1 0.245449835794637 1 0.149654179811478 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697806 chr5:37697813 synonymous SNV . 0 28 hm5C_associated_SNPs_44403 0 0 0 2 37697798 37697821 mRNA hsa-miR-224 WDR70 miRanda miRanda
4403 chr5 162869386 162869386 1 + G T UCEC 162869395 + 162869375 162869415 41 TACAGATAAATGGCAGAGATCTGACCTTCTGGCAAGAGCTT TACAGATAAATTGCAGAGATCTGACCTTCTGGCAAGAGCTT < 41bp 1 0.160488806406362 1 0.0488498210906982 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCNG1 ENSG00000113328 CDS Human protein_coding chr5:162869395 chr5:162869386 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_44408 0 0 1 1 162869380 162869391 mRNA hsa-miR-136 CCNG1 miRanda miRanda
4404 chr10 17277849 17277849 1 + T C UCEC 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGGATTCCTCTGCCTCTTCCAAACTTTTCCTCCCTG < 41bp 1 0.0838687607755544 1 0.647125363349915 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277849 nonsynonymous SNV 0.998 2 12 hm5C_associated_SNPs_44446 0 0 1 1 17277845 17277853 mRNA hsa-miR-539 VIM miRanda miRanda
4405 chrX 73043524 73043524 1 - T A UCEC 73043508 - 73043488 73043528 41 GAGGAGATGGAAAATTTTTGCAAAAAACAAGGTGTTGTGGT GAGGTGATGGAAAATTTTTGCAAAAAACAAGGTGTTGTGGT < 41bp 1 0.296360269921903 1 0.566891431808472 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043508 chrX:73043524 . . 0 5 hm5C_associated_SNPs_44492 0 0 1 1 73043504 73043526 lncRNA hsa-miR-450b-5p XIST miRanda starBase2
4406 chrX 73043524 73043524 1 - T A UCEC 73043534 - 73043514 73043554 41 GAAGATACATGCTTCCTGGCCTGATTGAGGAGATGGAAAAT GAAGATACATGCTTCCTGGCCTGATTGAGGTGATGGAAAAT < 41bp 1 0.0764556440879931 1 0.167967051267624 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043534 chrX:73043524 . . 0 31 hm5C_associated_SNPs_44493 0 0 1 1 73043504 73043526 lncRNA hsa-miR-450b-5p XIST miRanda starBase2
4407 chr5 7897298 7897298 1 + G A UCEC 7897284 + 7897264 7897304 41 AAGCCCCAGCAAAGTATGTGCAAGACAACATCCAGCTTCAT AAGCCCCAGCAAAGTATGTGCAAGACAACATCCAACTTCAT < 41bp 1 0.661192812426538 1 0.0973699986934662 experiment 0.677614375146924 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7897284 chr5:7897298 synonymous SNV . 0 35 hm5C_associated_SNPs_44500 0 0 1 1 7897277 7897300 mRNA hsa-miR-138 MTRR miRanda miRanda
4408 chr2 39008967 39008967 1 + G A UCEC 39008951 + 39008931 39008971 41 CTATAGACCCACCATATGGTCCAGAAAATTGCAGCAGCTCT CTATAGACCCACCATATGGTCCAGAAAATTGCAGCAACTCT < 41bp 1 0.505782303938213 1 0.152529060840607 experiment 0.988435392123574 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008951 chr2:39008967 nonsynonymous SNV 0.998 4 37 hm5C_associated_SNPs_44528 0 0 1 3 39008949 39008970 mRNA hsa-miR-22 GEMIN6 miRanda miRanda
4409 chr2 39008967 39008967 1 + G A UCEC 39008951 + 39008931 39008971 41 CTATAGACCCACCATATGGTCCAGAAAATTGCAGCAGCTCT CTATAGACCCACCATATGGTCCAGAAAATTGCAGCAACTCT < 41bp 1 0.505782303938213 1 0.152529060840607 experiment 0.988435392123574 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008951 chr2:39008967 nonsynonymous SNV 0.998 4 37 hm5C_associated_SNPs_44528 0 0 1 3 39008962 39008981 mRNA hsa-miR-216a GEMIN6 miRanda miRanda
4410 chr2 39008967 39008967 1 + G A UCEC 39008951 + 39008931 39008971 41 CTATAGACCCACCATATGGTCCAGAAAATTGCAGCAGCTCT CTATAGACCCACCATATGGTCCAGAAAATTGCAGCAACTCT < 41bp 1 0.505782303938213 1 0.152529060840607 experiment 0.988435392123574 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008951 chr2:39008967 nonsynonymous SNV 0.998 4 37 hm5C_associated_SNPs_44528 0 0 1 3 39008960 39008981 mRNA hsa-miR-216b GEMIN6 miRanda miRanda
4411 chr11 35250855 35250855 1 + A C UCEC 35250851 + 35250831 35250871 41 CTGATGAGACAAGGAACCTGCAGAATGTGGACATGAAGATT CTGATGAGACAAGGAACCTGCAGACTGTGGACATGAAGATT < 41bp 1 0.237915183819352 1 0.202997744083405 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35250851 chr11:35250855 nonsynonymous SNV 0.946 3 25 hm5C_associated_SNPs_44608 0 0 1 1 35250835 35250856 mRNA hsa-miR-544 CD44 miRanda miRanda
4412 chr1 236711387 236711387 1 + T A UCEC 236711377 + 236711357 236711397 41 GGCGTACACAGCCTGGAGTACAAACACAGATTTAAAGAGCT GGCGTACACAGCCTGGAGTACAAACACAGAATTAAAGAGCT < 41bp 1 0.100389816397014 1 0.256597340106964 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236711377 chr1:236711387 nonsynonymous SNV 0.993 2 31 hm5C_associated_SNPs_44668 0 0 1 1 236711386 236711408 mRNA hsa-miR-200c LGALS8 miRanda miRanda
4413 chr10 1118121 1118121 1 + C T UCEC 1118127 + 1118107 1118147 41 AAGCGCAAGTTGTTCGACTGCTCGCCAAACAAAACAGAAGC AAGCGCAAGTTGTTTGACTGCTCGCCAAACAAAACAGAAGC < 41bp 1 0.274868307078348 1 0.654619634151459 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR37 ENSG00000047056 CDS Human protein_coding chr10:1118127 chr10:1118121 nonsynonymous SNV 0.938 1 15 hm5C_associated_SNPs_44681 0 0 1 1 1118109 1118129 mRNA hsa-miR-503 WDR37 miRanda miRanda
4414 chr2 85598248 85598248 1 + G A UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCGCCACCCTCCGACACTACCTCT < 41bp 1 0.265234242120189 1 0.263414680957794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598248 nonsynonymous SNV 0.509 2 23 hm5C_associated_SNPs_44684 0 0 0 12 85598247 85598266 mRNA hsa-let-7a ELMOD3 miRanda miRanda
4415 chr2 85598248 85598248 1 + G A UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCGCCACCCTCCGACACTACCTCT < 41bp 1 0.265234242120189 1 0.263414680957794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598248 nonsynonymous SNV 0.509 2 23 hm5C_associated_SNPs_44684 0 0 0 12 85598247 85598266 mRNA hsa-let-7b ELMOD3 miRanda miRanda
4416 chr2 85598248 85598248 1 + G A UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCGCCACCCTCCGACACTACCTCT < 41bp 1 0.265234242120189 1 0.263414680957794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598248 nonsynonymous SNV 0.509 2 23 hm5C_associated_SNPs_44684 0 0 0 12 85598247 85598266 mRNA hsa-let-7c ELMOD3 miRanda miRanda
4417 chr2 85598248 85598248 1 + G A UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCGCCACCCTCCGACACTACCTCT < 41bp 1 0.265234242120189 1 0.263414680957794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598248 nonsynonymous SNV 0.509 2 23 hm5C_associated_SNPs_44684 0 0 0 12 85598247 85598266 mRNA hsa-let-7d ELMOD3 miRanda miRanda
4418 chr2 85598248 85598248 1 + G A UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCGCCACCCTCCGACACTACCTCT < 41bp 1 0.265234242120189 1 0.263414680957794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598248 nonsynonymous SNV 0.509 2 23 hm5C_associated_SNPs_44684 0 0 0 12 85598247 85598266 mRNA hsa-let-7e ELMOD3 miRanda miRanda
4419 chr2 85598248 85598248 1 + G A UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCGCCACCCTCCGACACTACCTCT < 41bp 1 0.265234242120189 1 0.263414680957794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598248 nonsynonymous SNV 0.509 2 23 hm5C_associated_SNPs_44684 0 0 0 12 85598245 85598266 mRNA hsa-let-7f ELMOD3 miRanda miRanda
4420 chr2 85598248 85598248 1 + G A UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCGCCACCCTCCGACACTACCTCT < 41bp 1 0.265234242120189 1 0.263414680957794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598248 nonsynonymous SNV 0.509 2 23 hm5C_associated_SNPs_44684 0 0 0 12 85598247 85598266 mRNA hsa-miR-98 ELMOD3 miRanda miRanda
4421 chr2 85598248 85598248 1 + G A UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCGCCACCCTCCGACACTACCTCT < 41bp 1 0.265234242120189 1 0.263414680957794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598248 nonsynonymous SNV 0.509 2 23 hm5C_associated_SNPs_44684 0 0 0 12 85598244 85598265 mRNA hsa-miR-196a ELMOD3 miRanda miRanda
4422 chr2 85598248 85598248 1 + G A UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCGCCACCCTCCGACACTACCTCT < 41bp 1 0.265234242120189 1 0.263414680957794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598248 nonsynonymous SNV 0.509 2 23 hm5C_associated_SNPs_44684 0 0 0 12 85598246 85598266 mRNA hsa-let-7g ELMOD3 miRanda miRanda
4423 chr2 85598248 85598248 1 + G A UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCGCCACCCTCCGACACTACCTCT < 41bp 1 0.265234242120189 1 0.263414680957794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598248 nonsynonymous SNV 0.509 2 23 hm5C_associated_SNPs_44684 0 0 0 12 85598246 85598266 mRNA hsa-let-7i ELMOD3 miRanda miRanda
4424 chr2 85598248 85598248 1 + G A UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCGCCACCCTCCGACACTACCTCT < 41bp 1 0.265234242120189 1 0.263414680957794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598248 nonsynonymous SNV 0.509 2 23 hm5C_associated_SNPs_44684 0 0 0 12 85598241 85598263 mRNA hsa-miR-142-3p ELMOD3 miRanda miRanda
4425 chr2 85598248 85598248 1 + G A UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCGCCACCCTCCGACACTACCTCT < 41bp 1 0.265234242120189 1 0.263414680957794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598248 nonsynonymous SNV 0.509 2 23 hm5C_associated_SNPs_44684 0 0 0 12 85598244 85598265 mRNA hsa-miR-196b ELMOD3 miRanda miRanda
4426 chr2 85598248 85598248 1 + G A UCEC 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCGCCACCCTCCGACACTACCTCTTCGGG < 41bp 1 0.793462711848868 1 0.77433055639267 experiment 0.413074576302264 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598248 nonsynonymous SNV 0.509 2 18 hm5C_associated_SNPs_44685 0 0 0 12 85598247 85598266 mRNA hsa-let-7a ELMOD3 miRanda miRanda
4427 chr2 85598248 85598248 1 + G A UCEC 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCGCCACCCTCCGACACTACCTCTTCGGG < 41bp 1 0.793462711848868 1 0.77433055639267 experiment 0.413074576302264 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598248 nonsynonymous SNV 0.509 2 18 hm5C_associated_SNPs_44685 0 0 0 12 85598247 85598266 mRNA hsa-let-7b ELMOD3 miRanda miRanda
4428 chr2 85598248 85598248 1 + G A UCEC 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCGCCACCCTCCGACACTACCTCTTCGGG < 41bp 1 0.793462711848868 1 0.77433055639267 experiment 0.413074576302264 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598248 nonsynonymous SNV 0.509 2 18 hm5C_associated_SNPs_44685 0 0 0 12 85598247 85598266 mRNA hsa-let-7c ELMOD3 miRanda miRanda
4429 chr2 85598248 85598248 1 + G A UCEC 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCGCCACCCTCCGACACTACCTCTTCGGG < 41bp 1 0.793462711848868 1 0.77433055639267 experiment 0.413074576302264 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598248 nonsynonymous SNV 0.509 2 18 hm5C_associated_SNPs_44685 0 0 0 12 85598247 85598266 mRNA hsa-let-7d ELMOD3 miRanda miRanda
4430 chr2 85598248 85598248 1 + G A UCEC 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCGCCACCCTCCGACACTACCTCTTCGGG < 41bp 1 0.793462711848868 1 0.77433055639267 experiment 0.413074576302264 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598248 nonsynonymous SNV 0.509 2 18 hm5C_associated_SNPs_44685 0 0 0 12 85598247 85598266 mRNA hsa-let-7e ELMOD3 miRanda miRanda
4431 chr2 85598248 85598248 1 + G A UCEC 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCGCCACCCTCCGACACTACCTCTTCGGG < 41bp 1 0.793462711848868 1 0.77433055639267 experiment 0.413074576302264 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598248 nonsynonymous SNV 0.509 2 18 hm5C_associated_SNPs_44685 0 0 0 12 85598245 85598266 mRNA hsa-let-7f ELMOD3 miRanda miRanda
4432 chr2 85598248 85598248 1 + G A UCEC 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCGCCACCCTCCGACACTACCTCTTCGGG < 41bp 1 0.793462711848868 1 0.77433055639267 experiment 0.413074576302264 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598248 nonsynonymous SNV 0.509 2 18 hm5C_associated_SNPs_44685 0 0 0 12 85598247 85598266 mRNA hsa-miR-98 ELMOD3 miRanda miRanda
4433 chr2 85598248 85598248 1 + G A UCEC 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCGCCACCCTCCGACACTACCTCTTCGGG < 41bp 1 0.793462711848868 1 0.77433055639267 experiment 0.413074576302264 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598248 nonsynonymous SNV 0.509 2 18 hm5C_associated_SNPs_44685 0 0 0 12 85598244 85598265 mRNA hsa-miR-196a ELMOD3 miRanda miRanda
4434 chr2 85598248 85598248 1 + G A UCEC 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCGCCACCCTCCGACACTACCTCTTCGGG < 41bp 1 0.793462711848868 1 0.77433055639267 experiment 0.413074576302264 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598248 nonsynonymous SNV 0.509 2 18 hm5C_associated_SNPs_44685 0 0 0 12 85598246 85598266 mRNA hsa-let-7g ELMOD3 miRanda miRanda
4435 chr2 85598248 85598248 1 + G A UCEC 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCGCCACCCTCCGACACTACCTCTTCGGG < 41bp 1 0.793462711848868 1 0.77433055639267 experiment 0.413074576302264 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598248 nonsynonymous SNV 0.509 2 18 hm5C_associated_SNPs_44685 0 0 0 12 85598246 85598266 mRNA hsa-let-7i ELMOD3 miRanda miRanda
4436 chr2 85598248 85598248 1 + G A UCEC 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCGCCACCCTCCGACACTACCTCTTCGGG < 41bp 1 0.793462711848868 1 0.77433055639267 experiment 0.413074576302264 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598248 nonsynonymous SNV 0.509 2 18 hm5C_associated_SNPs_44685 0 0 0 12 85598241 85598263 mRNA hsa-miR-142-3p ELMOD3 miRanda miRanda
4437 chr2 85598248 85598248 1 + G A UCEC 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCGCCACCCTCCGACACTACCTCTTCGGG < 41bp 1 0.793462711848868 1 0.77433055639267 experiment 0.413074576302264 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598248 nonsynonymous SNV 0.509 2 18 hm5C_associated_SNPs_44685 0 0 0 12 85598244 85598265 mRNA hsa-miR-196b ELMOD3 miRanda miRanda
4438 chr10 73122283 73122283 1 + C T UCEC 73122270 + 73122250 73122290 41 CTAAGATTGTGCCCAGGGAGCTGGCTGAGGCCACGGGAGTG CTAAGATTGTGCCCAGGGAGCTGGCTGAGGCCATGGGAGTG < 41bp 1 0.663645223854715 1 0.448062479496002 experiment 0.672709552290571 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73122270 chr10:73122283 nonsynonymous SNV 0.670 4 34 hm5C_associated_SNPs_44701 0 0 1 1 73122274 73122295 mRNA hsa-miR-197 SLC29A3 miRanda miRanda
4439 chr17 25633863 25633863 1 + C A UCEC 25633851 + 25633831 25633871 41 GGGCATCAGAATTGGGTGTACAGCTGTGCATTCTCTCCTGA GGGCATCAGAATTGGGTGTACAGCTGTGCATTATCTCCTGA < 41bp 1 0.719177466030001 1 0.199654132127762 experiment 0.561645067939998 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WSB1 ENSG00000109046 CDS Human protein_coding chr17:25633851 chr17:25633863 nonsynonymous SNV 0.998 3 33 hm5C_associated_SNPs_44702 0 0 1 1 25633847 25633869 mRNA hsa-miR-185 WSB1 miRanda miRanda
4440 chrX 114856667 114856667 1 + G A UCEC 114856664 + 114856644 114856684 41 AGAGAAATTATTCAGAAACTCATGCTGGATGGTGACAGGAA AGAGAAATTATTCAGAAACTCATACTGGATGGTGACAGGAA < 41bp 1 0.129450974330362 1 0.118164718151093 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856664 chrX:114856667 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_44752 0 0 1 2 114856653 114856672 mRNA hsa-miR-338-3p PLS3 miRanda miRanda
4441 chrX 114856667 114856667 1 + G A UCEC 114856664 + 114856644 114856684 41 AGAGAAATTATTCAGAAACTCATGCTGGATGGTGACAGGAA AGAGAAATTATTCAGAAACTCATACTGGATGGTGACAGGAA < 41bp 1 0.129450974330362 1 0.118164718151093 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856664 chrX:114856667 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_44752 0 0 1 2 114856659 114856684 mRNA hsa-miR-339-5p PLS3 miRanda miRanda
4442 chrX 114856667 114856667 1 + G A UCEC 114856679 + 114856659 114856699 41 AAACTCATGCTGGATGGTGACAGGAATAAAGATGGGAAAAT AAACTCATACTGGATGGTGACAGGAATAAAGATGGGAAAAT < 41bp 1 0.795623751233163 1 0.367406666278839 experiment 0.408752497533675 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856679 chrX:114856667 nonsynonymous SNV 0.999 1 9 hm5C_associated_SNPs_44753 0 0 1 2 114856653 114856672 mRNA hsa-miR-338-3p PLS3 miRanda miRanda
4443 chrX 114856667 114856667 1 + G A UCEC 114856679 + 114856659 114856699 41 AAACTCATGCTGGATGGTGACAGGAATAAAGATGGGAAAAT AAACTCATACTGGATGGTGACAGGAATAAAGATGGGAAAAT < 41bp 1 0.795623751233163 1 0.367406666278839 experiment 0.408752497533675 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856679 chrX:114856667 nonsynonymous SNV 0.999 1 9 hm5C_associated_SNPs_44753 0 0 1 2 114856659 114856684 mRNA hsa-miR-339-5p PLS3 miRanda miRanda
4444 chrX 73044917 73044917 1 - G T UCEC 73044935 - 73044915 73044955 41 ATGCTGGGTGCTAGAGCTACCAAAGGGGGAAAAGTATTCTC ATGCTGGGTGCTAGAGCTACCAAAGGGGGAAAAGTATTATC < 41bp 1 0.3450179773207 1 0.788606584072113 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044935 chrX:73044917 . . 0 39 hm5C_associated_SNPs_44796 0 0 1 1 73044913 73044934 lncRNA hsa-miR-580-3p XIST miRanda starBase2
4445 chrX 73044918 73044918 1 - A C UCEC 73044935 - 73044915 73044955 41 ATGCTGGGTGCTAGAGCTACCAAAGGGGGAAAAGTATTCTC ATGCTGGGTGCTAGAGCTACCAAAGGGGGAAAAGTATGCTC < 41bp 1 0.434306882364567 1 0.847711741924286 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044935 chrX:73044918 . . 0 38 hm5C_associated_SNPs_44807 0 0 1 1 73044913 73044934 lncRNA hsa-miR-580-3p XIST miRanda starBase2
4446 chr2 55461997 55461997 1 + C T UCEC 55461979 + 55461959 55461999 41 ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGT ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTTGT < 41bp 1 0.153212388645333 1 0.0407131910324097 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461979 chr2:55461997 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_44820 0 0 1 3 55461987 55462009 mRNA hsa-miR-29a RPS27A miRanda miRanda
4447 chr2 55461997 55461997 1 + C T UCEC 55461979 + 55461959 55461999 41 ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGT ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTTGT < 41bp 1 0.153212388645333 1 0.0407131910324097 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461979 chr2:55461997 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_44820 0 0 1 3 55461986 55462009 mRNA hsa-miR-29b RPS27A miRanda miRanda
4448 chr2 55461997 55461997 1 + C T UCEC 55461979 + 55461959 55461999 41 ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGT ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTTGT < 41bp 1 0.153212388645333 1 0.0407131910324097 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461979 chr2:55461997 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_44820 0 0 1 3 55461987 55462009 mRNA hsa-miR-29c RPS27A miRanda miRanda
4449 chr2 55461997 55461997 1 + C T UCEC 55462007 + 55461987 55462027 41 GTTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT GTTGAGACTTTGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT < 41bp 1 0.410412655487547 1 0.187788993120193 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55462007 chr2:55461997 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_44821 0 0 1 3 55461987 55462009 mRNA hsa-miR-29a RPS27A miRanda miRanda
4450 chr2 55461997 55461997 1 + C T UCEC 55462007 + 55461987 55462027 41 GTTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT GTTGAGACTTTGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT < 41bp 1 0.410412655487547 1 0.187788993120193 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55462007 chr2:55461997 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_44821 0 0 1 3 55461986 55462009 mRNA hsa-miR-29b RPS27A miRanda miRanda
4451 chr2 55461997 55461997 1 + C T UCEC 55462007 + 55461987 55462027 41 GTTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT GTTGAGACTTTGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT < 41bp 1 0.410412655487547 1 0.187788993120193 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55462007 chr2:55461997 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_44821 0 0 1 3 55461987 55462009 mRNA hsa-miR-29c RPS27A miRanda miRanda
4452 chr5 71648510 71648510 1 + A C UCEC 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAACCTGATACAGACTCTAAAAAATGCTGCAGAAGGA < 41bp 1 0.462705151963826 1 0.701010763645172 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648510 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_44842 0 0 1 3 71648507 71648530 mRNA hsa-miR-103 PTCD2 miRanda miRanda
4453 chr5 71648510 71648510 1 + A C UCEC 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAACCTGATACAGACTCTAAAAAATGCTGCAGAAGGA < 41bp 1 0.462705151963826 1 0.701010763645172 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648510 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_44842 0 0 1 3 71648507 71648530 mRNA hsa-miR-107 PTCD2 miRanda miRanda
4454 chr5 71648510 71648510 1 + A C UCEC 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAACCTGATACAGACTCTAAAAAATGCTGCAGAAGGA < 41bp 1 0.462705151963826 1 0.701010763645172 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648510 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_44842 0 0 1 3 71648505 71648530 mRNA hsa-miR-338-3p PTCD2 miRanda miRanda
4455 chr1 55075524 55075524 1 + A G UCEC 55075531 + 55075511 55075551 41 CTCCAGCGTCAGGATGTTGCCACTTGGAGTATGAACAATGG CTCCAGCGTCAGGGTGTTGCCACTTGGAGTATGAACAATGG < 41bp 1 0.510688948231185 1 0.259092211723328 experiment 0.978622103537629 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control FAM151A ENSG00000162391 CDS Human protein_coding chr1:55075531 chr1:55075524 nonsynonymous SNV 0.013 0 14 hm5C_associated_SNPs_44870 0 0 0 1 55075513 55075535 mRNA hsa-miR-454 ACOT11 miRanda miRanda
4456 chr19 19645937 19645937 1 + G T UCEC 19645936 + 19645916 19645956 41 CAGTGGGGCTGGTCTGTGCCCGGCACCTGCGGGTGTTTGTA CAGTGGGGCTGGTCTGTGCCCTGCACCTGCGGGTGTTTGTA < 41bp 1 0.719520439574625 1 0.445620656013489 experiment 0.560959120850751 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control YJEFN3 ENSG00000250067;ENSG00000258674 CDS Human other chr19:19645936 chr19:19645937 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_44926 0 0 1 1 19645935 19645953 mRNA hsa-miR-371-5p YJEFN3 miRanda miRanda
4457 chr14 60592509 60592509 1 + T C UCEC 60592489 + 60592469 60592509 41 TGATGAAAAGTGGAAGGAAGCAATTTTACAAGAAAAGCCAT TGATGAAAAGTGGAAGGAAGCAATTTTACAAGAAAAGCCAC < 41bp 1 0.313192264584483 1 0.257998615503311 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60592489 chr14:60592509 nonsynonymous SNV 0.997 2 41 hm5C_associated_SNPs_44942 0 0 1 2 60592488 60592510 mRNA hsa-miR-135a C14orf135 miRanda miRanda
4458 chr14 60592509 60592509 1 + T C UCEC 60592489 + 60592469 60592509 41 TGATGAAAAGTGGAAGGAAGCAATTTTACAAGAAAAGCCAT TGATGAAAAGTGGAAGGAAGCAATTTTACAAGAAAAGCCAC < 41bp 1 0.313192264584483 1 0.257998615503311 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60592489 chr14:60592509 nonsynonymous SNV 0.997 2 41 hm5C_associated_SNPs_44942 0 0 1 2 60592488 60592510 mRNA hsa-miR-135b C14orf135 miRanda miRanda
4459 chr7 116199070 116199070 1 + T C UCEC 116199065 + 116199045 116199085 41 TTTGACGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGT TTTGACGGCATTTGGAAGGCCAGCTCCACCACCTTCACTGT < 41bp 1 0.3145329439521 1 0.285999715328217 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 CDS Human protein_coding chr7:116199065 chr7:116199070 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_44985 0 0 0 3 116199068 116199088 mRNA hsa-miR-27a CAV1 miRanda miRanda
4460 chr7 116199070 116199070 1 + T C UCEC 116199065 + 116199045 116199085 41 TTTGACGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGT TTTGACGGCATTTGGAAGGCCAGCTCCACCACCTTCACTGT < 41bp 1 0.3145329439521 1 0.285999715328217 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 CDS Human protein_coding chr7:116199065 chr7:116199070 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_44985 0 0 0 3 116199068 116199088 mRNA hsa-miR-27b CAV1 miRanda miRanda
4461 chr7 116199070 116199070 1 + T C UCEC 116199065 + 116199045 116199085 41 TTTGACGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGT TTTGACGGCATTTGGAAGGCCAGCTCCACCACCTTCACTGT < 41bp 1 0.3145329439521 1 0.285999715328217 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 CDS Human protein_coding chr7:116199065 chr7:116199070 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_44985 0 0 0 3 116199069 116199087 mRNA hsa-miR-128 CAV1 miRanda miRanda
4462 chr20 39721205 39721205 1 + G T UCEC 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATTTGCCCCACCATATGAGCCTCTTCCAGATAATGTCAAGT < 41bp 1 0.0719054169937073 1 0.0442748665809631 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721205 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_44987 0 0 1 5 39721204 39721225 mRNA hsa-miR-374a TOP1 miRanda miRanda
4463 chr20 39721205 39721205 1 + G T UCEC 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATTTGCCCCACCATATGAGCCTCTTCCAGATAATGTCAAGT < 41bp 1 0.0719054169937073 1 0.0442748665809631 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721205 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_44987 0 0 1 5 39721185 39721206 mRNA hsa-miR-330-5p TOP1 miRanda miRanda
4464 chr20 39721205 39721205 1 + G T UCEC 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATTTGCCCCACCATATGAGCCTCTTCCAGATAATGTCAAGT < 41bp 1 0.0719054169937073 1 0.0442748665809631 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721205 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_44987 0 0 1 5 39721187 39721206 mRNA hsa-miR-326 TOP1 miRanda miRanda
4465 chr20 39721205 39721205 1 + G T UCEC 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATTTGCCCCACCATATGAGCCTCTTCCAGATAATGTCAAGT < 41bp 1 0.0719054169937073 1 0.0442748665809631 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721205 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_44987 0 0 1 5 39721191 39721212 mRNA hsa-miR-543 TOP1 miRanda miRanda
4466 chr20 39721205 39721205 1 + G T UCEC 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATTTGCCCCACCATATGAGCCTCTTCCAGATAATGTCAAGT < 41bp 1 0.0719054169937073 1 0.0442748665809631 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721205 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_44987 0 0 1 5 39721204 39721225 mRNA hsa-miR-374b TOP1 miRanda miRanda
4467 chr2 29344289 29344289 1 + A G UCEC 29344282 + 29344262 29344302 41 TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTG TAGAGGACCTTCCAGATTTTCCATTAGGAGGAAATCCTTTG < 41bp 1 0.0814796821496358 1 0.0441745519638062 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29344282 chr2:29344289 nonsynonymous SNV 0.992 3 28 hm5C_associated_SNPs_44991 0 0 1 1 29344278 29344299 mRNA hsa-miR-876-5p CLIP4 miRanda miRanda
4468 chr11 85977204 85977204 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGATAATGATGAA < 41bp 1 0.170166720033489 1 0.165116459131241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977204 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_45022 0 0 1 13 85977199 85977220 mRNA hsa-miR-25 EED miRanda miRanda
4469 chr11 85977204 85977204 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGATAATGATGAA < 41bp 1 0.170166720033489 1 0.165116459131241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977204 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_45022 0 0 1 13 85977199 85977220 mRNA hsa-miR-32 EED miRanda miRanda
4470 chr11 85977204 85977204 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGATAATGATGAA < 41bp 1 0.170166720033489 1 0.165116459131241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977204 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_45022 0 0 1 13 85977198 85977218 mRNA hsa-miR-33a EED miRanda miRanda
4471 chr11 85977204 85977204 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGATAATGATGAA < 41bp 1 0.170166720033489 1 0.165116459131241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977204 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_45022 0 0 1 13 85977199 85977220 mRNA hsa-miR-92a EED miRanda miRanda
4472 chr11 85977204 85977204 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGATAATGATGAA < 41bp 1 0.170166720033489 1 0.165116459131241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977204 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_45022 0 0 1 13 85977195 85977217 mRNA hsa-miR-181a EED miRanda miRanda
4473 chr11 85977204 85977204 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGATAATGATGAA < 41bp 1 0.170166720033489 1 0.165116459131241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977204 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_45022 0 0 1 13 85977195 85977217 mRNA hsa-miR-181b EED miRanda miRanda
4474 chr11 85977204 85977204 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGATAATGATGAA < 41bp 1 0.170166720033489 1 0.165116459131241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977204 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_45022 0 0 1 13 85977195 85977217 mRNA hsa-miR-181c EED miRanda miRanda
4475 chr11 85977204 85977204 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGATAATGATGAA < 41bp 1 0.170166720033489 1 0.165116459131241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977204 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_45022 0 0 1 13 85977204 85977225 mRNA hsa-miR-205 EED miRanda miRanda
4476 chr11 85977204 85977204 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGATAATGATGAA < 41bp 1 0.170166720033489 1 0.165116459131241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977204 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_45022 0 0 1 13 85977200 85977220 mRNA hsa-miR-363 EED miRanda miRanda
4477 chr11 85977204 85977204 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGATAATGATGAA < 41bp 1 0.170166720033489 1 0.165116459131241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977204 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_45022 0 0 1 13 85977199 85977220 mRNA hsa-miR-367 EED miRanda miRanda
4478 chr11 85977204 85977204 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGATAATGATGAA < 41bp 1 0.170166720033489 1 0.165116459131241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977204 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_45022 0 0 1 13 85977195 85977217 mRNA hsa-miR-181d EED miRanda miRanda
4479 chr11 85977204 85977204 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGATAATGATGAA < 41bp 1 0.170166720033489 1 0.165116459131241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977204 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_45022 0 0 1 13 85977199 85977220 mRNA hsa-miR-92b EED miRanda miRanda
4480 chr11 85977204 85977204 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGATAATGATGAA < 41bp 1 0.170166720033489 1 0.165116459131241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977204 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_45022 0 0 1 13 85977199 85977218 mRNA hsa-miR-33b EED miRanda miRanda
4481 chr3 39453847 39453847 1 + T C UCEC 39453861 + 39453841 39453881 41 AACCACTGACTGGTCTTAAGCTGTTCTTGCATAGGCTCTTA AACCACCGACTGGTCTTAAGCTGTTCTTGCATAGGCTCTTA < 41bp 1 0.551380927914952 1 0.0938301980495453 experiment 0.897238144170095 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPSA ENSG00000168028 CDS Human protein_coding chr3:39453861 chr3:39453847 synonymous SNV . 0 7 hm5C_associated_SNPs_45068 0 0 0 1 39453822 39453848 mRNA hsa-miR-140-5p RPSA miRanda miRanda
4482 chr1 227618498 227618498 1 + A C UCEC 227618502 + 227618482 227618522 41 CAGACAGAAGGATGTAAAGTCTGGAAAATACAGCCAGATCC CAGACAGAAGGATGTACAGTCTGGAAAATACAGCCAGATCC < 41bp 1 0.748421892279406 1 0.736329913139343 experiment 0.503156215441189 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC42BPA;ZNF678 ENSG00000234277;ENSG00000242757 ncRNA_exonic Human other chr1:227618502 chr1:227618498 . . 0 17 hm5C_associated_SNPs_45077 0 0 0 1 227618485 227618505 lncRNA hsa-miR-499b-5p LINC01641 miRanda starBase2
4483 chr19 11422855 11422855 1 + G A UCEC 11422851 + 11422831 11422871 41 TCCTAAAAATCACCAAGACTCAGAGCTTCACCCTGAGTGGG TCCTAAAAATCACCAAGACTCAGAACTTCACCCTGAGTGGG < 41bp 1 0.778478739416681 1 0.467606365680695 experiment 0.443042521166639 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TSPAN16 ENSG00000130167 CDS Human protein_coding chr19:11422851 chr19:11422855 nonsynonymous SNV 0.982 3 25 hm5C_associated_SNPs_45100 0 0 0 1 11422844 11422866 mRNA hsa-miR-125a-3p TSPAN16 miRanda miRanda
4484 chrX 152959698 152959698 1 + C A UCEC 152959707 + 152959687 152959727 41 CTCTGCTTTGTCATCGATCTCTCCATGGTGACTGATGTGAG CTCTGCTTTGTAATCGATCTCTCCATGGTGACTGATGTGAG < 41bp 1 0.742337380096665 1 0.947188556194305 experiment 0.515325239806669 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959707 chrX:152959698 synonymous SNV . 0 12 hm5C_associated_SNPs_45114 0 0 1 4 152959697 152959720 mRNA hsa-miR-29a SLC6A8 miRanda miRanda
4485 chrX 152959698 152959698 1 + C A UCEC 152959707 + 152959687 152959727 41 CTCTGCTTTGTCATCGATCTCTCCATGGTGACTGATGTGAG CTCTGCTTTGTAATCGATCTCTCCATGGTGACTGATGTGAG < 41bp 1 0.742337380096665 1 0.947188556194305 experiment 0.515325239806669 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959707 chrX:152959698 synonymous SNV . 0 12 hm5C_associated_SNPs_45114 0 0 1 4 152959696 152959720 mRNA hsa-miR-29b SLC6A8 miRanda miRanda
4486 chrX 152959698 152959698 1 + C A UCEC 152959707 + 152959687 152959727 41 CTCTGCTTTGTCATCGATCTCTCCATGGTGACTGATGTGAG CTCTGCTTTGTAATCGATCTCTCCATGGTGACTGATGTGAG < 41bp 1 0.742337380096665 1 0.947188556194305 experiment 0.515325239806669 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959707 chrX:152959698 synonymous SNV . 0 12 hm5C_associated_SNPs_45114 0 0 1 4 152959687 152959711 mRNA hsa-miR-185 SLC6A8 miRanda miRanda
4487 chrX 152959698 152959698 1 + C A UCEC 152959707 + 152959687 152959727 41 CTCTGCTTTGTCATCGATCTCTCCATGGTGACTGATGTGAG CTCTGCTTTGTAATCGATCTCTCCATGGTGACTGATGTGAG < 41bp 1 0.742337380096665 1 0.947188556194305 experiment 0.515325239806669 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959707 chrX:152959698 synonymous SNV . 0 12 hm5C_associated_SNPs_45114 0 0 1 4 152959697 152959720 mRNA hsa-miR-29c SLC6A8 miRanda miRanda
4488 chrX 152959698 152959698 1 + C A UCEC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG AATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.338382523163474 1 0.118282735347748 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959698 synonymous SNV . 0 1 hm5C_associated_SNPs_45115 0 0 1 4 152959697 152959720 mRNA hsa-miR-29a SLC6A8 miRanda miRanda
4489 chrX 152959698 152959698 1 + C A UCEC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG AATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.338382523163474 1 0.118282735347748 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959698 synonymous SNV . 0 1 hm5C_associated_SNPs_45115 0 0 1 4 152959696 152959720 mRNA hsa-miR-29b SLC6A8 miRanda miRanda
4490 chrX 152959698 152959698 1 + C A UCEC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG AATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.338382523163474 1 0.118282735347748 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959698 synonymous SNV . 0 1 hm5C_associated_SNPs_45115 0 0 1 4 152959687 152959711 mRNA hsa-miR-185 SLC6A8 miRanda miRanda
4491 chrX 152959698 152959698 1 + C A UCEC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG AATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.338382523163474 1 0.118282735347748 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959698 synonymous SNV . 0 1 hm5C_associated_SNPs_45115 0 0 1 4 152959697 152959720 mRNA hsa-miR-29c SLC6A8 miRanda miRanda
4492 chrX 73044055 73044055 1 - A G UCEC 73044044 - 73044024 73044064 41 GTTATCTATTGTGTGCCAATCTCATTGCTAGGCATTGGGGA GTTATCTATCGTGTGCCAATCTCATTGCTAGGCATTGGGGA < 41bp 1 0.105244983172896 1 0.193599224090576 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044044 chrX:73044055 . . 0 10 hm5C_associated_SNPs_45153 0 0 1 2 73044045 73044067 lncRNA hsa-miR-1271-5p XIST miRanda starBase2
4493 chrX 73044055 73044055 1 - A G UCEC 73044044 - 73044024 73044064 41 GTTATCTATTGTGTGCCAATCTCATTGCTAGGCATTGGGGA GTTATCTATCGTGTGCCAATCTCATTGCTAGGCATTGGGGA < 41bp 1 0.105244983172896 1 0.193599224090576 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044044 chrX:73044055 . . 0 10 hm5C_associated_SNPs_45153 0 0 1 2 73044045 73044068 lncRNA hsa-miR-96-5p XIST miRanda starBase2
4494 chrX 73044055 73044055 1 - A G UCEC 73044072 - 73044052 73044092 41 TGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATTGTG TGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATCGTG < 41bp 1 0.117420220471024 1 0.0741501748561859 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044072 chrX:73044055 . . 0 38 hm5C_associated_SNPs_45154 0 0 1 2 73044045 73044067 lncRNA hsa-miR-1271-5p XIST miRanda starBase2
4495 chrX 73044055 73044055 1 - A G UCEC 73044072 - 73044052 73044092 41 TGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATTGTG TGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATCGTG < 41bp 1 0.117420220471024 1 0.0741501748561859 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044072 chrX:73044055 . . 0 38 hm5C_associated_SNPs_45154 0 0 1 2 73044045 73044068 lncRNA hsa-miR-96-5p XIST miRanda starBase2
4496 chrX 73044055 73044055 1 - A G UCEC 73044074 - 73044054 73044094 41 ATTGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATTG ATTGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATCG < 41bp 1 0.263214542591734 1 0.197937965393066 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044074 chrX:73044055 . . 0 40 hm5C_associated_SNPs_45155 0 0 1 2 73044045 73044067 lncRNA hsa-miR-1271-5p XIST miRanda starBase2
4497 chrX 73044055 73044055 1 - A G UCEC 73044074 - 73044054 73044094 41 ATTGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATTG ATTGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATCG < 41bp 1 0.263214542591734 1 0.197937965393066 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044074 chrX:73044055 . . 0 40 hm5C_associated_SNPs_45155 0 0 1 2 73044045 73044068 lncRNA hsa-miR-96-5p XIST miRanda starBase2
4498 chrX 73044055 73044055 1 - A G UCEC 73044075 - 73044055 73044095 41 GATTGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATT GATTGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATC < 41bp 1 0.0717803136731025 1 0.0313075482845306 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044075 chrX:73044055 . . 0 41 hm5C_associated_SNPs_45156 0 0 1 2 73044045 73044067 lncRNA hsa-miR-1271-5p XIST miRanda starBase2
4499 chrX 73044055 73044055 1 - A G UCEC 73044075 - 73044055 73044095 41 GATTGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATT GATTGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATC < 41bp 1 0.0717803136731025 1 0.0313075482845306 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044075 chrX:73044055 . . 0 41 hm5C_associated_SNPs_45156 0 0 1 2 73044045 73044068 lncRNA hsa-miR-96-5p XIST miRanda starBase2
4500 chr2 113260567 113260567 1 + T G UCEC 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGCTTCGGACTGCTTCAGAACCATAGCATGTTGATA < 41bp 1 0.524367120529687 1 0.521205544471741 experiment 0.951265758940626 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260567 stopgain 0.999 1 31 hm5C_associated_SNPs_45164 0 0 1 5 113260548 113260569 mRNA hsa-miR-190 TTL miRanda miRanda
4501 chr2 113260567 113260567 1 + T G UCEC 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGCTTCGGACTGCTTCAGAACCATAGCATGTTGATA < 41bp 1 0.524367120529687 1 0.521205544471741 experiment 0.951265758940626 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260567 stopgain 0.999 1 31 hm5C_associated_SNPs_45164 0 0 1 5 113260552 113260573 mRNA hsa-miR-433 TTL miRanda miRanda
4502 chr2 113260567 113260567 1 + T G UCEC 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGCTTCGGACTGCTTCAGAACCATAGCATGTTGATA < 41bp 1 0.524367120529687 1 0.521205544471741 experiment 0.951265758940626 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260567 stopgain 0.999 1 31 hm5C_associated_SNPs_45164 0 0 1 5 113260556 113260577 mRNA hsa-miR-505 TTL miRanda miRanda
4503 chr2 113260567 113260567 1 + T G UCEC 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGCTTCGGACTGCTTCAGAACCATAGCATGTTGATA < 41bp 1 0.524367120529687 1 0.521205544471741 experiment 0.951265758940626 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260567 stopgain 0.999 1 31 hm5C_associated_SNPs_45164 0 0 1 5 113260554 113260576 mRNA hsa-miR-421 TTL miRanda miRanda
4504 chr2 113260567 113260567 1 + T G UCEC 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGCTTCGGACTGCTTCAGAACCATAGCATGTTGATA < 41bp 1 0.524367120529687 1 0.521205544471741 experiment 0.951265758940626 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260567 stopgain 0.999 1 31 hm5C_associated_SNPs_45164 0 0 1 5 113260549 113260569 mRNA hsa-miR-190b TTL miRanda miRanda
4505 chr5 56526790 56526790 1 + A G UCEC 56526784 + 56526764 56526804 41 GCTTTGATTCTGCTATTGGGCGTCCTAATGGAGGTAAAATT GCTTTGATTCTGCTATTGGGCGTCCTGATGGAGGTAAAATT < 41bp 1 0.201495431623147 1 0.0828137099742889 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526784 chr5:56526790 nonsynonymous SNV 0.999 0 27 hm5C_associated_SNPs_45174 0 0 1 1 56526775 56526796 mRNA hsa-miR-136 GPBP1 miRanda miRanda
4506 chr1 214503554 214503554 1 + G T UCEC 214503545 + 214503525 214503565 41 TATTGATCTCCTGTACCCAACGGAAGATAGAAATGACCGGT TATTGATCTCCTGTACCCAACGGAAGATATAAATGACCGGT < 41bp 1 0.625174936289887 1 0.64493590593338 experiment 0.749650127420226 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503545 chr1:214503554 nonsynonymous SNV 0.995 4 30 hm5C_associated_SNPs_45198 0 0 1 2 214503554 214503575 mRNA hsa-miR-216a SMYD2 miRanda miRanda
4507 chr1 214503554 214503554 1 + G T UCEC 214503545 + 214503525 214503565 41 TATTGATCTCCTGTACCCAACGGAAGATAGAAATGACCGGT TATTGATCTCCTGTACCCAACGGAAGATATAAATGACCGGT < 41bp 1 0.625174936289887 1 0.64493590593338 experiment 0.749650127420226 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503545 chr1:214503554 nonsynonymous SNV 0.995 4 30 hm5C_associated_SNPs_45198 0 0 1 2 214503551 214503575 mRNA hsa-miR-216b SMYD2 miRanda miRanda
4508 chr17 53852187 53852187 1 + A C UCEC 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCGATAACCCGGGTGGCCACATTCCGTCCTGGCTCATT < 41bp 1 0.382251610603269 1 0.0713023245334625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852187 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_45205 0 0 1 1 53852176 53852197 mRNA hsa-miR-184 PCTP miRanda miRanda
4509 chr3 186504022 186504022 1 + A G UCEC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCGAAT < 41bp 1 0.15248777527213 1 0.112883985042572 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504022 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_45303 0 0 1 6 186504015 186504036 mRNA hsa-miR-216a EIF4A2 miRanda miRanda
4510 chr3 186504022 186504022 1 + A G UCEC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCGAAT < 41bp 1 0.15248777527213 1 0.112883985042572 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504022 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_45303 0 0 1 6 186504012 186504032 mRNA hsa-miR-376c EIF4A2 miRanda miRanda
4511 chr3 186504022 186504022 1 + A G UCEC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCGAAT < 41bp 1 0.15248777527213 1 0.112883985042572 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504022 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_45303 0 0 1 6 186504005 186504032 mRNA hsa-miR-376a EIF4A2 miRanda miRanda
4512 chr3 186504022 186504022 1 + A G UCEC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCGAAT < 41bp 1 0.15248777527213 1 0.112883985042572 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504022 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_45303 0 0 1 6 186504010 186504032 mRNA hsa-miR-433 EIF4A2 miRanda miRanda
4513 chr3 186504022 186504022 1 + A G UCEC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCGAAT < 41bp 1 0.15248777527213 1 0.112883985042572 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504022 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_45303 0 0 1 6 186504012 186504032 mRNA hsa-miR-376b EIF4A2 miRanda miRanda
4514 chr3 186504022 186504022 1 + A G UCEC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCGAAT < 41bp 1 0.15248777527213 1 0.112883985042572 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504022 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_45303 0 0 1 6 186504015 186504036 mRNA hsa-miR-216b EIF4A2 miRanda miRanda
4515 chr11 65268433 65268433 1 + G A UCEC 65268439 + 65268419 65268459 41 CTGAAGCTTTTGAGGGCAGACTGCCAAGTCCTGGAGAAATA CTGAAGCTTTTGAGAGCAGACTGCCAAGTCCTGGAGAAATA < 41bp 1 0.252265789189064 1 0.0764643847942352 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268439 chr11:65268433 . . 0 15 hm5C_associated_SNPs_45305 0 0 1 1 65268418 65268440 lncRNA hsa-miR-346 MALAT1 miRanda starBase2
4516 chr11 65268433 65268433 1 + G A UCEC 65268449 + 65268429 65268469 41 TGAGGGCAGACTGCCAAGTCCTGGAGAAATAGTAGATGGCA TGAGAGCAGACTGCCAAGTCCTGGAGAAATAGTAGATGGCA < 41bp 1 0.793309966121094 1 0.573239028453827 experiment 0.413380067757812 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268449 chr11:65268433 . . 0 5 hm5C_associated_SNPs_45306 0 0 1 1 65268418 65268440 lncRNA hsa-miR-346 MALAT1 miRanda starBase2
4517 chr15 63866345 63866345 1 + T C UCEC 63866342 + 63866322 63866362 41 CAGAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT CAGAATCTAGAAAGTTTGATCCACTCCTAGGTAAGATATAT < 41bp 1 0.0382137718500345 1 0.0851966738700867 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP3 ENSG00000140455 CDS Human protein_coding chr15:63866342 chr15:63866345 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_45325 0 0 1 4 63866328 63866349 mRNA hsa-miR-1 USP3 miRanda miRanda
4518 chr15 63866345 63866345 1 + T C UCEC 63866342 + 63866322 63866362 41 CAGAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT CAGAATCTAGAAAGTTTGATCCACTCCTAGGTAAGATATAT < 41bp 1 0.0382137718500345 1 0.0851966738700867 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP3 ENSG00000140455 CDS Human protein_coding chr15:63866342 chr15:63866345 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_45325 0 0 1 4 63866328 63866349 mRNA hsa-miR-206 USP3 miRanda miRanda
4519 chr15 63866345 63866345 1 + T C UCEC 63866342 + 63866322 63866362 41 CAGAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT CAGAATCTAGAAAGTTTGATCCACTCCTAGGTAAGATATAT < 41bp 1 0.0382137718500345 1 0.0851966738700867 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP3 ENSG00000140455 CDS Human protein_coding chr15:63866342 chr15:63866345 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_45325 0 0 1 4 63866339 63866351 mRNA hsa-miR-488 USP3 miRanda miRanda
4520 chr15 63866345 63866345 1 + T C UCEC 63866342 + 63866322 63866362 41 CAGAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT CAGAATCTAGAAAGTTTGATCCACTCCTAGGTAAGATATAT < 41bp 1 0.0382137718500345 1 0.0851966738700867 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP3 ENSG00000140455 CDS Human protein_coding chr15:63866342 chr15:63866345 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_45325 0 0 1 4 63866330 63866349 mRNA hsa-miR-613 USP3 miRanda miRanda
4521 chr8 42927425 42927425 1 + G T UCEC 42927423 + 42927403 42927443 41 GATGCAAAGAATTATCATGCCTGGCAGCATCGACAATGGGT GATGCAAAGAATTATCATGCCTTGCAGCATCGACAATGGGT < 41bp 1 0.183819725081127 1 0.0258871912956238 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FNTA ENSG00000168522;ENSG00000254673 CDS Human other chr8:42927423 chr8:42927425 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_45352 0 0 0 1 42927406 42927427 mRNA hsa-miR-338-3p FNTA miRanda miRanda
4522 chr19 52196895 52196895 1 + G A UCEC 52196899 + 52196879 52196919 41 TACTCTGAGCGCCTCCGCATCTGCCAGATGTTTGTTGGGAT TACTCTGAGCGCCTCCACATCTGCCAGATGTTTGTTGGGAT < 41bp 1 0.238226290383581 1 0.386158972978592 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPACA6 ENSG00000182310;ENSG00000273318 ncRNA_exonic Human other chr19:52196899 chr19:52196895 . . 0 17 hm5C_associated_SNPs_45356 0 0 1 1 52196894 52196915 mRNA hsa-miR-495 NCRNA00085 miRanda miRanda
4523 chr2 120125830 120125830 1 + C T UCEC 120125835 + 120125815 120125855 41 TCGGATGAGGAGATGCTGTTCATCTATGGCCACTACAAACA TCGGATGAGGAGATGTTGTTCATCTATGGCCACTACAAACA < 41bp 1 0.291760721279525 1 0.0611684024333954 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DBI ENSG00000155368 CDS Human protein_coding chr2:120125835 chr2:120125830 synonymous SNV . 0 16 hm5C_associated_SNPs_45438 0 0 1 1 120125829 120125851 mRNA hsa-miR-142-3p DBI miRanda miRanda
4524 chr11 17316969 17316969 1 + A G UCEC 17316973 + 17316953 17316993 41 ACATAGACAAGACAAAAGTACAAAATATTCACCCTGTGGAA ACATAGACAAGACAAAGGTACAAAATATTCACCCTGTGGAA < 41bp 1 0.607920939533556 1 0.0914878845214844 experiment 0.784158120932888 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17316973 chr11:17316969 synonymous SNV . 0 17 hm5C_associated_SNPs_45465 0 0 1 1 17316955 17316975 mRNA hsa-miR-218 NUCB2 miRanda miRanda
4525 chrX 73047062 73047062 1 - C A UCEC 73047047 - 73047027 73047067 41 TCAGAGCAAGCATTGTGGAGCGGTTCCTTATGCCAGGCTGC TCAGATCAAGCATTGTGGAGCGGTTCCTTATGCCAGGCTGC < 41bp 1 0.0926678293024499 1 0.0814279913902283 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047047 chrX:73047062 . . 0 6 hm5C_associated_SNPs_45500 0 0 1 2 73047059 73047080 lncRNA hsa-miR-5691 XIST miRanda starBase2
4526 chrX 73047062 73047062 1 - C A UCEC 73047047 - 73047027 73047067 41 TCAGAGCAAGCATTGTGGAGCGGTTCCTTATGCCAGGCTGC TCAGATCAAGCATTGTGGAGCGGTTCCTTATGCCAGGCTGC < 41bp 1 0.0926678293024499 1 0.0814279913902283 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047047 chrX:73047062 . . 0 6 hm5C_associated_SNPs_45500 0 0 1 2 73047059 73047081 lncRNA hsa-miR-6805-3p XIST miRanda starBase2
4527 chrX 73047062 73047062 1 - C A UCEC 73047076 - 73047056 73047096 41 CCTGCCTGATAGGTGCAGAACGTCGGCTATCAGAGCAAGCA CCTGCCTGATAGGTGCAGAACGTCGGCTATCAGATCAAGCA < 41bp 1 0.296743049347251 1 0.118366181850433 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047076 chrX:73047062 . . 0 35 hm5C_associated_SNPs_45501 0 0 1 2 73047059 73047080 lncRNA hsa-miR-5691 XIST miRanda starBase2
4528 chrX 73047062 73047062 1 - C A UCEC 73047076 - 73047056 73047096 41 CCTGCCTGATAGGTGCAGAACGTCGGCTATCAGAGCAAGCA CCTGCCTGATAGGTGCAGAACGTCGGCTATCAGATCAAGCA < 41bp 1 0.296743049347251 1 0.118366181850433 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047076 chrX:73047062 . . 0 35 hm5C_associated_SNPs_45501 0 0 1 2 73047059 73047081 lncRNA hsa-miR-6805-3p XIST miRanda starBase2
4529 chr22 35726433 35726433 1 + G A UCEC 35726424 + 35726404 35726444 41 ATGAGCAGCTGACAGAGGAGCTGCTCATCGTCAATGACAAT ATGAGCAGCTGACAGAGGAGCTGCTCATCATCAATGACAAT < 41bp 1 0.135943126184217 1 0.0452596843242645 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35726424 chr22:35726433 nonsynonymous SNV 0.944 0 30 hm5C_associated_SNPs_45530 0 0 1 1 35726426 35726446 mRNA hsa-miR-219-5p TOM1 miRanda miRanda
4530 chr19 10886498 10886498 1 + A G UCEC 10886497 + 10886477 10886517 41 CAGTTCATCAGCCGGGAGAGCAGCCTCATTCTGGCTGTCAC CAGTTCATCAGCCGGGAGAGCGGCCTCATTCTGGCTGTCAC < 41bp 1 0.267303699099767 1 0.267601728439331 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886497 chr19:10886498 nonsynonymous SNV 0.943 3 22 hm5C_associated_SNPs_45534 0 0 1 1 10886477 10886504 mRNA hsa-miR-485-5p DNM2 miRanda miRanda
4531 chr9 100077142 100077142 1 + G A UCEC 100077158 + 100077138 100077178 41 AAGCGTGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT AAGCATGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT < 41bp 1 0.583651564466374 1 0.502076923847198 experiment 0.832696871067251 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100077158 chr9:100077142 nonsynonymous SNV 0.518 4 5 hm5C_associated_SNPs_45564 0 0 0 2 100077139 100077160 mRNA hsa-miR-448 KIAA1529 miRanda miRanda
4532 chr9 100077142 100077142 1 + G A UCEC 100077158 + 100077138 100077178 41 AAGCGTGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT AAGCATGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT < 41bp 1 0.583651564466374 1 0.502076923847198 experiment 0.832696871067251 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100077158 chr9:100077142 nonsynonymous SNV 0.518 4 5 hm5C_associated_SNPs_45564 0 0 0 2 100077141 100077163 mRNA hsa-miR-544 KIAA1529 miRanda miRanda
4533 chrX 73044538 73044538 1 - C T UCEC 73044553 - 73044533 73044573 41 GAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAATGT GAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCAAATGT < 41bp 1 0.140111564588106 1 0.0311310291290283 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044553 chrX:73044538 . . 0 36 hm5C_associated_SNPs_45596 0 0 1 1 73044527 73044550 lncRNA hsa-miR-6835-3p XIST miRanda starBase2
4534 chrX 73044538 73044538 1 - C T UCEC 73044555 - 73044535 73044575 41 GTGAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAAT GTGAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCAAAT < 41bp 1 0.0759810451307282 1 0.0475502610206604 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044555 chrX:73044538 . . 0 38 hm5C_associated_SNPs_45597 0 0 1 1 73044527 73044550 lncRNA hsa-miR-6835-3p XIST miRanda starBase2
4535 chr2 71297699 71297699 1 + C T UCEC 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGATGGATTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.589988907567841 1 0.21455904841423 experiment 0.820022184864319 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297699 synonymous SNV . 0 16 hm5C_associated_SNPs_45619 0 0 1 2 71297694 71297715 mRNA hsa-miR-140-5p NAGK miRanda miRanda
4536 chr2 71297699 71297699 1 + C T UCEC 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGATGGATTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.589988907567841 1 0.21455904841423 experiment 0.820022184864319 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297699 synonymous SNV . 0 16 hm5C_associated_SNPs_45619 0 0 1 2 71297689 71297709 mRNA hsa-miR-599 NAGK miRanda miRanda
4537 chr19 58290954 58290954 1 + T C UCEC 58290970 + 58290950 58290990 41 TTATTATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT TTATCATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT < 41bp 1 0.224049017288204 1 0.0635986924171448 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58290970 chr19:58290954 synonymous SNV . 0 5 hm5C_associated_SNPs_45733 0 0 1 2 58290937 58290958 mRNA hsa-miR-374a ZNF586 miRanda miRanda
4538 chr19 58290954 58290954 1 + T C UCEC 58290970 + 58290950 58290990 41 TTATTATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT TTATCATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT < 41bp 1 0.224049017288204 1 0.0635986924171448 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58290970 chr19:58290954 synonymous SNV . 0 5 hm5C_associated_SNPs_45733 0 0 1 2 58290938 58290958 mRNA hsa-miR-374b ZNF586 miRanda miRanda
4539 chr17 37816514 37816514 1 + G A UCEC 37816499 + 37816479 37816519 41 GTGTACACCATTGAAGTTCCCTTTCACGGCAAGACGTTTAT GTGTACACCATTGAAGTTCCCTTTCACGGCAAGACATTTAT < 41bp 1 0.0467741709037189 1 0.0245318710803986 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37816499 chr17:37816514 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_45737 0 0 1 1 37816494 37816514 mRNA hsa-miR-431 STARD3 miRanda miRanda
4540 chr16 626234 626234 1 + G A UCEC 626254 + 626234 626274 41 GCCCTCGTTCCTGTGGCTGACGTGAGTGGACTGGGGTGGAG ACCCTCGTTCCTGTGGCTGACGTGAGTGGACTGGGGTGGAG < 41bp 1 0.793920940850674 1 0.44940248131752 experiment 0.412158118298652 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PIGQ ENSG00000007541 CDS Human protein_coding chr16:626254 chr16:626234 nonsynonymous SNV 0.026 1 1 hm5C_associated_SNPs_45740 0 0 1 1 626227 626247 mRNA hsa-miR-873 PIGQ miRanda miRanda
4541 chr16 21190820 21190820 1 + T C UCEC 21190826 + 21190806 21190846 41 CAGCAAAACACCAGTTGTGACTTTCTGCCAGCCATGAAGTC CAGCAAAACACCAGCTGTGACTTTCTGCCAGCCATGAAGTC < 41bp 1 0.0616158032687862 1 0.0434902310371399 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMEM159 ENSG00000011638 CDS Human protein_coding chr16:21190826 chr16:21190820 synonymous SNV . 0 15 hm5C_associated_SNPs_45742 0 0 1 1 21190809 21190829 mRNA hsa-miR-224 TMEM159 miRanda miRanda
4542 chr17 35310480 35310480 1 + G A UCEC 35310470 + 35310450 35310490 41 GGGATGACGCGGAAGACTCCCAAGGCGAGAGTGAGGAAGAC GGGATGACGCGGAAGACTCCCAAGGCGAGAATGAGGAAGAC < 41bp 1 0.796696486459212 1 0.56956684589386 experiment 0.406607027081576 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AATF ENSG00000108270 CDS Human other chr17:35310470 chr17:35310480 nonsynonymous SNV 0.705 0 31 hm5C_associated_SNPs_45765 0 0 1 1 35310473 35310495 mRNA hsa-miR-339-5p AATF miRanda miRanda
4543 chr2 37475367 37475367 1 + G A UCEC 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAAAGA < 41bp 1 0.398916921974601 1 0.669553875923157 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475367 synonymous SNV . 0 38 hm5C_associated_SNPs_45775 0 0 1 1 37475352 37475373 mRNA hsa-miR-216b C2orf56 miRanda miRanda
4544 chr2 37475367 37475367 1 + G A UCEC 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAAAGAT < 41bp 1 0.38217753094069 1 0.334486961364746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475367 synonymous SNV . 0 37 hm5C_associated_SNPs_45776 0 0 1 1 37475352 37475373 mRNA hsa-miR-216b C2orf56 miRanda miRanda
4545 chr1 109643050 109643050 1 + C A UCEC 109643033 + 109643013 109643053 41 TGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCT TGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGATCT < 41bp 1 0.131532296668742 1 0.145508378744125 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643033 chr1:109643050 . . 0 38 hm5C_associated_SNPs_45781 0 0 1 2 109643038 109643058 lncRNA hsa-miR-3150b-3p AL356488.2 miRanda starBase2
4546 chr1 109643050 109643050 1 + C A UCEC 109643033 + 109643013 109643053 41 TGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCT TGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGATCT < 41bp 1 0.131532296668742 1 0.145508378744125 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643033 chr1:109643050 . . 0 38 hm5C_associated_SNPs_45781 0 0 1 2 109643040 109643058 lncRNA hsa-miR-4784 AL356488.2 miRanda starBase2
4547 chr1 109643050 109643050 1 + C A UCEC 109643037 + 109643017 109643057 41 CCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCTCCTC CCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGATCTCCTC < 41bp 1 0.668829065435276 1 0.349602460861206 experiment 0.662341869129447 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643037 chr1:109643050 . . 0 34 hm5C_associated_SNPs_45782 0 0 1 2 109643038 109643058 lncRNA hsa-miR-3150b-3p AL356488.2 miRanda starBase2
4548 chr1 109643050 109643050 1 + C A UCEC 109643037 + 109643017 109643057 41 CCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCTCCTC CCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGATCTCCTC < 41bp 1 0.668829065435276 1 0.349602460861206 experiment 0.662341869129447 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643037 chr1:109643050 . . 0 34 hm5C_associated_SNPs_45782 0 0 1 2 109643040 109643058 lncRNA hsa-miR-4784 AL356488.2 miRanda starBase2
4549 chr1 109643050 109643050 1 + C A UCEC 109643068 + 109643048 109643088 41 AGCTCTCCTCCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG AGATCTCCTCCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG < 41bp 1 0.153001594729939 1 0.220854580402374 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643068 chr1:109643050 . . 0 3 hm5C_associated_SNPs_45783 0 0 1 2 109643038 109643058 lncRNA hsa-miR-3150b-3p AL356488.2 miRanda starBase2
4550 chr1 109643050 109643050 1 + C A UCEC 109643068 + 109643048 109643088 41 AGCTCTCCTCCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG AGATCTCCTCCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG < 41bp 1 0.153001594729939 1 0.220854580402374 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643068 chr1:109643050 . . 0 3 hm5C_associated_SNPs_45783 0 0 1 2 109643040 109643058 lncRNA hsa-miR-4784 AL356488.2 miRanda starBase2
4551 chr16 29853334 29853334 1 + G A UCEC 29853323 + 29853303 29853343 41 GCTGGGCGGCCCAAGCGTCCCCATGCCCGCCGTGCGCTCTG GCTGGGCGGCCCAAGCGTCCCCATGCCCGCCATGCGCTCTG < 41bp 1 0.324482318551051 1 0.0862736105918884 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29853323 chr16:29853334 nonsynonymous SNV 0.992 2 32 hm5C_associated_SNPs_45796 0 0 0 1 29853328 29853351 mRNA hsa-miR-214 MVP miRanda miRanda
4552 chr7 2419050 2419050 1 + A G UCEC 2419036 + 2419016 2419056 41 TTTGTCCCCTCAGGGGTGGACACTGACGAGCTGGACAGCAA TTTGTCCCCTCAGGGGTGGACACTGACGAGCTGGGCAGCAA < 41bp 1 0.428582885683165 1 0.0847239196300507 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2419036 chr7:2419050 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_45832 0 0 1 1 2419036 2419057 mRNA hsa-miR-599 EIF3B miRanda miRanda
4553 chr7 2419050 2419050 1 + A G UCEC 2419038 + 2419018 2419058 41 TGTCCCCTCAGGGGTGGACACTGACGAGCTGGACAGCAACG TGTCCCCTCAGGGGTGGACACTGACGAGCTGGGCAGCAACG < 41bp 1 0.462048055446428 1 0.0488315522670746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2419038 chr7:2419050 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_45833 0 0 1 1 2419036 2419057 mRNA hsa-miR-599 EIF3B miRanda miRanda
4554 chr7 2419050 2419050 1 + A G UCEC 2419051 + 2419031 2419071 41 GTGGACACTGACGAGCTGGACAGCAACGTGGACGACTGGGA GTGGACACTGACGAGCTGGGCAGCAACGTGGACGACTGGGA < 41bp 1 0.691100235743268 1 0.308981359004974 experiment 0.617799528513463 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2419051 chr7:2419050 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_45834 0 0 1 1 2419036 2419057 mRNA hsa-miR-599 EIF3B miRanda miRanda
4555 chr11 125513701 125513701 1 + C T UCEC 125513690 + 125513670 125513710 41 TTTGTTTTCTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTT TTTGTTTTCTTTTTTAGGGGCAAAAAGGCCCTGAGTCACTT < 41bp 1 0.405062275239521 1 0.27319073677063 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513690 chr11:125513701 stopgain 0.996 0 32 hm5C_associated_SNPs_45858 0 0 1 3 125513701 125513723 mRNA hsa-miR-362-3p CHEK1 miRanda miRanda
4556 chr11 125513701 125513701 1 + C T UCEC 125513690 + 125513670 125513710 41 TTTGTTTTCTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTT TTTGTTTTCTTTTTTAGGGGCAAAAAGGCCCTGAGTCACTT < 41bp 1 0.405062275239521 1 0.27319073677063 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513690 chr11:125513701 stopgain 0.996 0 32 hm5C_associated_SNPs_45858 0 0 1 3 125513687 125513711 mRNA hsa-miR-372 CHEK1 miRanda miRanda
4557 chr11 125513701 125513701 1 + C T UCEC 125513690 + 125513670 125513710 41 TTTGTTTTCTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTT TTTGTTTTCTTTTTTAGGGGCAAAAAGGCCCTGAGTCACTT < 41bp 1 0.405062275239521 1 0.27319073677063 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513690 chr11:125513701 stopgain 0.996 0 32 hm5C_associated_SNPs_45858 0 0 1 3 125513687 125513711 mRNA hsa-miR-520e CHEK1 miRanda miRanda
4558 chr11 125513701 125513701 1 + C T UCEC 125513698 + 125513678 125513718 41 CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGT CTTTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGT < 41bp 1 0.13303785512191 1 0.186926245689392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513698 chr11:125513701 stopgain 0.996 0 24 hm5C_associated_SNPs_45859 0 0 1 3 125513701 125513723 mRNA hsa-miR-362-3p CHEK1 miRanda miRanda
4559 chr11 125513701 125513701 1 + C T UCEC 125513698 + 125513678 125513718 41 CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGT CTTTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGT < 41bp 1 0.13303785512191 1 0.186926245689392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513698 chr11:125513701 stopgain 0.996 0 24 hm5C_associated_SNPs_45859 0 0 1 3 125513687 125513711 mRNA hsa-miR-372 CHEK1 miRanda miRanda
4560 chr11 125513701 125513701 1 + C T UCEC 125513698 + 125513678 125513718 41 CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGT CTTTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGT < 41bp 1 0.13303785512191 1 0.186926245689392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513698 chr11:125513701 stopgain 0.996 0 24 hm5C_associated_SNPs_45859 0 0 1 3 125513687 125513711 mRNA hsa-miR-520e CHEK1 miRanda miRanda
4561 chr11 125513701 125513701 1 + C T UCEC 125513699 + 125513679 125513719 41 TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTG TTTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTG < 41bp 1 0.371423849725464 1 0.18227207660675 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513699 chr11:125513701 stopgain 0.996 0 23 hm5C_associated_SNPs_45860 0 0 1 3 125513701 125513723 mRNA hsa-miR-362-3p CHEK1 miRanda miRanda
4562 chr11 125513701 125513701 1 + C T UCEC 125513699 + 125513679 125513719 41 TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTG TTTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTG < 41bp 1 0.371423849725464 1 0.18227207660675 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513699 chr11:125513701 stopgain 0.996 0 23 hm5C_associated_SNPs_45860 0 0 1 3 125513687 125513711 mRNA hsa-miR-372 CHEK1 miRanda miRanda
4563 chr11 125513701 125513701 1 + C T UCEC 125513699 + 125513679 125513719 41 TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTG TTTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTG < 41bp 1 0.371423849725464 1 0.18227207660675 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513699 chr11:125513701 stopgain 0.996 0 23 hm5C_associated_SNPs_45860 0 0 1 3 125513687 125513711 mRNA hsa-miR-520e CHEK1 miRanda miRanda
4564 chr11 125513701 125513701 1 + C T UCEC 125513700 + 125513680 125513720 41 TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGT TTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTGT < 41bp 1 0.274133184770787 1 0.0893861949443817 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513700 chr11:125513701 stopgain 0.996 0 22 hm5C_associated_SNPs_45861 0 0 1 3 125513701 125513723 mRNA hsa-miR-362-3p CHEK1 miRanda miRanda
4565 chr11 125513701 125513701 1 + C T UCEC 125513700 + 125513680 125513720 41 TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGT TTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTGT < 41bp 1 0.274133184770787 1 0.0893861949443817 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513700 chr11:125513701 stopgain 0.996 0 22 hm5C_associated_SNPs_45861 0 0 1 3 125513687 125513711 mRNA hsa-miR-372 CHEK1 miRanda miRanda
4566 chr11 125513701 125513701 1 + C T UCEC 125513700 + 125513680 125513720 41 TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGT TTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTGT < 41bp 1 0.274133184770787 1 0.0893861949443817 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513700 chr11:125513701 stopgain 0.996 0 22 hm5C_associated_SNPs_45861 0 0 1 3 125513687 125513711 mRNA hsa-miR-520e CHEK1 miRanda miRanda
4567 chr20 62562233 62562233 1 + G A UCEC 62562230 + 62562210 62562250 41 TTTGTCTTCTGCGGCCTCCTCACGTGCTGCTACTGCTGCTG TTTGTCTTCTGCGGCCTCCTCACATGCTGCTACTGCTGCTG < 41bp 1 0.435484054798577 1 0.428897887468338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62562230 chr20:62562233 synonymous SNV . 0 24 hm5C_associated_SNPs_45872 0 0 1 6 62562220 62562241 mRNA hsa-miR-15a DNAJC5 miRanda miRanda
4568 chr20 62562233 62562233 1 + G A UCEC 62562230 + 62562210 62562250 41 TTTGTCTTCTGCGGCCTCCTCACGTGCTGCTACTGCTGCTG TTTGTCTTCTGCGGCCTCCTCACATGCTGCTACTGCTGCTG < 41bp 1 0.435484054798577 1 0.428897887468338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62562230 chr20:62562233 synonymous SNV . 0 24 hm5C_associated_SNPs_45872 0 0 1 6 62562220 62562241 mRNA hsa-miR-16 DNAJC5 miRanda miRanda
4569 chr20 62562233 62562233 1 + G A UCEC 62562230 + 62562210 62562250 41 TTTGTCTTCTGCGGCCTCCTCACGTGCTGCTACTGCTGCTG TTTGTCTTCTGCGGCCTCCTCACATGCTGCTACTGCTGCTG < 41bp 1 0.435484054798577 1 0.428897887468338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62562230 chr20:62562233 synonymous SNV . 0 24 hm5C_associated_SNPs_45872 0 0 1 6 62562220 62562241 mRNA hsa-miR-15b DNAJC5 miRanda miRanda
4570 chr20 62562233 62562233 1 + G A UCEC 62562230 + 62562210 62562250 41 TTTGTCTTCTGCGGCCTCCTCACGTGCTGCTACTGCTGCTG TTTGTCTTCTGCGGCCTCCTCACATGCTGCTACTGCTGCTG < 41bp 1 0.435484054798577 1 0.428897887468338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62562230 chr20:62562233 synonymous SNV . 0 24 hm5C_associated_SNPs_45872 0 0 1 6 62562221 62562241 mRNA hsa-miR-195 DNAJC5 miRanda miRanda
4571 chr20 62562233 62562233 1 + G A UCEC 62562230 + 62562210 62562250 41 TTTGTCTTCTGCGGCCTCCTCACGTGCTGCTACTGCTGCTG TTTGTCTTCTGCGGCCTCCTCACATGCTGCTACTGCTGCTG < 41bp 1 0.435484054798577 1 0.428897887468338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62562230 chr20:62562233 synonymous SNV . 0 24 hm5C_associated_SNPs_45872 0 0 1 6 62562220 62562241 mRNA hsa-miR-424 DNAJC5 miRanda miRanda
4572 chr20 62562233 62562233 1 + G A UCEC 62562230 + 62562210 62562250 41 TTTGTCTTCTGCGGCCTCCTCACGTGCTGCTACTGCTGCTG TTTGTCTTCTGCGGCCTCCTCACATGCTGCTACTGCTGCTG < 41bp 1 0.435484054798577 1 0.428897887468338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62562230 chr20:62562233 synonymous SNV . 0 24 hm5C_associated_SNPs_45872 0 0 1 6 62562222 62562241 mRNA hsa-miR-497 DNAJC5 miRanda miRanda
4573 chr8 41355102 41355102 1 + C T UCEC 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGGTCAGTCATATCTCGAAGGTTGT < 41bp 1 0.173211925604444 1 0.109503954648972 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355102 synonymous SNV . 0 20 hm5C_associated_SNPs_45875 0 0 1 2 41355086 41355107 mRNA hsa-miR-193a-3p GOLGA7 miRanda miRanda
4574 chr8 41355102 41355102 1 + C T UCEC 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGGTCAGTCATATCTCGAAGGTTGT < 41bp 1 0.173211925604444 1 0.109503954648972 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355102 synonymous SNV . 0 20 hm5C_associated_SNPs_45875 0 0 1 2 41355086 41355107 mRNA hsa-miR-193b GOLGA7 miRanda miRanda
4575 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312537 16312558 mRNA hsa-miR-17 OXNAD1 miRanda miRanda
4576 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312537 16312558 mRNA hsa-miR-20a OXNAD1 miRanda miRanda
4577 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312537 16312558 mRNA hsa-miR-93 OXNAD1 miRanda miRanda
4578 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312537 16312558 mRNA hsa-miR-106a OXNAD1 miRanda miRanda
4579 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312539 16312558 mRNA hsa-miR-106b OXNAD1 miRanda miRanda
4580 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312532 16312557 mRNA hsa-miR-302a OXNAD1 miRanda miRanda
4581 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312532 16312557 mRNA hsa-miR-302b OXNAD1 miRanda miRanda
4582 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312532 16312557 mRNA hsa-miR-302c OXNAD1 miRanda miRanda
4583 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312532 16312557 mRNA hsa-miR-302d OXNAD1 miRanda miRanda
4584 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312532 16312557 mRNA hsa-miR-372 OXNAD1 miRanda miRanda
4585 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312530 16312557 mRNA hsa-miR-373 OXNAD1 miRanda miRanda
4586 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312537 16312558 mRNA hsa-miR-20b OXNAD1 miRanda miRanda
4587 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312537 16312557 mRNA hsa-miR-520e OXNAD1 miRanda miRanda
4588 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312536 16312557 mRNA hsa-miR-520a-3p OXNAD1 miRanda miRanda
4589 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312537 16312557 mRNA hsa-miR-520b OXNAD1 miRanda miRanda
4590 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312536 16312557 mRNA hsa-miR-520c-3p OXNAD1 miRanda miRanda
4591 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312537 16312558 mRNA hsa-miR-519d OXNAD1 miRanda miRanda
4592 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312530 16312557 mRNA hsa-miR-520d-3p OXNAD1 miRanda miRanda
4593 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 16312541 16312557 mRNA hsa-miR-302e OXNAD1 miRanda miRanda
4594 chr3 195398092 195398092 1 + C T UCEC 195398099 + 195398079 195398119 41 AAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGG AAGGTTTATGGAGTGATACGCCCCCATCGCGAAGGACCTGG < 41bp 1 0.150528439694075 1 0.0354055166244507 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195398099 chr3:195398092 . . 0 14 hm5C_associated_SNPs_45979 0 0 0 1 195398082 195398102 lncRNA hsa-miR-585-3p MUC20-OT1 miRanda starBase2
4595 chr5 37697793 37697793 1 + T C UCEC 37697804 + 37697784 37697824 41 GCTCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTC GCTCATGACCCGGGCACAGACACTTCTTGCGTGACTTTTTC < 41bp 1 0.385093290878185 1 0.0567492544651031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697804 chr5:37697793 nonsynonymous SNV 0.991 0 10 hm5C_associated_SNPs_46078 0 0 1 2 37697782 37697809 mRNA hsa-miR-372 WDR70 miRanda miRanda
4596 chr5 37697793 37697793 1 + T C UCEC 37697804 + 37697784 37697824 41 GCTCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTC GCTCATGACCCGGGCACAGACACTTCTTGCGTGACTTTTTC < 41bp 1 0.385093290878185 1 0.0567492544651031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697804 chr5:37697793 nonsynonymous SNV 0.991 0 10 hm5C_associated_SNPs_46078 0 0 1 2 37697785 37697805 mRNA hsa-miR-431 WDR70 miRanda miRanda
4597 chr5 37697793 37697793 1 + T C UCEC 37697806 + 37697786 37697826 41 TCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTCCT TCATGACCCGGGCACAGACACTTCTTGCGTGACTTTTTCCT < 41bp 1 0.236267017535377 1 0.0515223145484924 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697806 chr5:37697793 nonsynonymous SNV 0.991 0 8 hm5C_associated_SNPs_46079 0 0 1 2 37697782 37697809 mRNA hsa-miR-372 WDR70 miRanda miRanda
4598 chr5 37697793 37697793 1 + T C UCEC 37697806 + 37697786 37697826 41 TCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTCCT TCATGACCCGGGCACAGACACTTCTTGCGTGACTTTTTCCT < 41bp 1 0.236267017535377 1 0.0515223145484924 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697806 chr5:37697793 nonsynonymous SNV 0.991 0 8 hm5C_associated_SNPs_46079 0 0 1 2 37697785 37697805 mRNA hsa-miR-431 WDR70 miRanda miRanda
4599 chr9 32440573 32440573 1 + C T UCEC 32440574 + 32440554 32440594 41 GAGACTGGGCAGCTAAGGGCCCTTTCCTGCTGGTGAGTATG GAGACTGGGCAGCTAAGGGTCCTTTCCTGCTGGTGAGTATG < 41bp 1 0.0201118943896876 1 0.0338228046894073 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACO1 ENSG00000122729 CDS Human protein_coding chr9:32440574 chr9:32440573 synonymous SNV . 0 20 hm5C_associated_SNPs_46094 0 0 1 1 32440565 32440585 mRNA hsa-miR-214 ACO1 miRanda miRanda
4600 chr2 96686970 96686970 1 + C A UCEC 96686979 + 96686959 96686999 41 GACCTGATAGCCTGGGTGTCCCAGTGAGTGACAGGGGCTAT GACCTGATAGCATGGGTGTCCCAGTGAGTGACAGGGGCTAT < 41bp 1 0.339604799546162 1 0.285600602626801 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAHD2CP ENSG00000231584 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96686979 chr2:96686970 . . 0 12 hm5C_associated_SNPs_46205 0 0 1 1 96686969 96686981 mRNA hsa-miR-495 LOC729234 miRanda miRanda
4601 chr11 107917088 107917088 1 + G A UCEC 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTAAGCAAACACAGGCAGTAAGTTCTACATGC < 41bp 1 0.516094730374704 1 0.502670049667358 experiment 0.967810539250593 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917088 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_46279 0 0 1 1 107917074 107917093 mRNA hsa-miR-218 CUL5 miRanda miRanda
4602 chr9 15453183 15453183 1 + C A UCEC 15453178 + 15453158 15453198 41 GTCATCAGGGAGACTGTGAACATGTCATTGTCATTACTGAC GTCATCAGGGAGACTGTGAACATGTAATTGTCATTACTGAC < 41bp 1 0.362454474034898 1 0.0754299163818359 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15453178 chr9:15453183 synonymous SNV . 0 26 hm5C_associated_SNPs_46299 0 0 1 1 15453177 15453199 mRNA hsa-miR-223 SNAPC3 miRanda miRanda
4603 chr20 18455766 18455766 1 + G T UCEC 18455764 + 18455744 18455784 41 TAAAAGTAATTTGCCATTAACAGAAATCAACAAAATTCTGA TAAAAGTAATTTGCCATTAACATAAATCAACAAAATTCTGA < 41bp 1 0.265355955786124 1 0.0934963226318359 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLR3F ENSG00000132664 CDS Human protein_coding chr20:18455764 chr20:18455766 stopgain 1.000 1 23 hm5C_associated_SNPs_46353 0 0 1 3 18455761 18455781 mRNA hsa-miR-590-3p POLR3F miRanda miRanda
4604 chr20 18455766 18455766 1 + G T UCEC 18455764 + 18455744 18455784 41 TAAAAGTAATTTGCCATTAACAGAAATCAACAAAATTCTGA TAAAAGTAATTTGCCATTAACATAAATCAACAAAATTCTGA < 41bp 1 0.265355955786124 1 0.0934963226318359 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLR3F ENSG00000132664 CDS Human protein_coding chr20:18455764 chr20:18455766 stopgain 1.000 1 23 hm5C_associated_SNPs_46353 0 0 1 3 18455756 18455776 mRNA hsa-miR-653 POLR3F miRanda miRanda
4605 chr20 18455766 18455766 1 + G T UCEC 18455764 + 18455744 18455784 41 TAAAAGTAATTTGCCATTAACAGAAATCAACAAAATTCTGA TAAAAGTAATTTGCCATTAACATAAATCAACAAAATTCTGA < 41bp 1 0.265355955786124 1 0.0934963226318359 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLR3F ENSG00000132664 CDS Human protein_coding chr20:18455764 chr20:18455766 stopgain 1.000 1 23 hm5C_associated_SNPs_46353 0 0 1 3 18455747 18455773 mRNA hsa-miR-876-5p POLR3F miRanda miRanda
4606 chr12 54675961 54675961 1 + G T UCEC 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAGATATTATTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.531200995662408 1 0.29952472448349 experiment 0.937598008675184 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675961 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_46354 0 0 0 5 54675944 54675965 mRNA hsa-miR-216a HNRNPA1 miRanda miRanda
4607 chr12 54675961 54675961 1 + G T UCEC 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAGATATTATTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.531200995662408 1 0.29952472448349 experiment 0.937598008675184 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675961 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_46354 0 0 0 5 54675960 54675980 mRNA hsa-miR-200b HNRNPA1 miRanda miRanda
4608 chr12 54675961 54675961 1 + G T UCEC 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAGATATTATTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.531200995662408 1 0.29952472448349 experiment 0.937598008675184 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675961 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_46354 0 0 0 5 54675956 54675980 mRNA hsa-miR-200c HNRNPA1 miRanda miRanda
4609 chr12 54675961 54675961 1 + G T UCEC 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAGATATTATTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.531200995662408 1 0.29952472448349 experiment 0.937598008675184 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675961 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_46354 0 0 0 5 54675959 54675980 mRNA hsa-miR-429 HNRNPA1 miRanda miRanda
4610 chr12 54675961 54675961 1 + G T UCEC 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAGATATTATTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.531200995662408 1 0.29952472448349 experiment 0.937598008675184 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675961 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_46354 0 0 0 5 54675946 54675965 mRNA hsa-miR-216b HNRNPA1 miRanda miRanda
4611 chr19 50027855 50027855 1 + G A UCEC 50027862 + 50027842 50027882 41 ACCCTCCGGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTG ACCCTCCGGAGCTACAACTTCGGTTCCTGCGGAATGGGCTG < 41bp 1 0.433478842450071 1 0.428003072738647 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCGRT ENSG00000104870 CDS Human protein_coding chr19:50027862 chr19:50027855 synonymous SNV . 0 14 hm5C_associated_SNPs_46360 0 0 1 1 50027853 50027871 mRNA hsa-miR-873 FCGRT miRanda miRanda
4612 chr12 58121825 58121825 1 + C T UCEC 58121832 + 58121812 58121852 41 CCTCAAAGTGCCACGTCTGACCCGTGCTGGACACGATCAGG CCTCAAAGTGCCATGTCTGACCCGTGCTGGACACGATCAGG < 41bp 1 0.547616505149282 1 0.152056276798248 experiment 0.904766989701435 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP2 ENSG00000135439 CDS Human protein_coding chr12:58121832 chr12:58121825 synonymous SNV . 0 14 hm5C_associated_SNPs_46372 0 0 0 1 58121818 58121841 mRNA hsa-miR-214 LOC100130776 miRanda miRanda
4613 chr10 75520023 75520023 1 + G A UCEC 75520010 + 75519990 75520030 41 TGGACAGAGTTTTGGAGGGCCCTCAGTGAGCCAGCCCAACC TGGACAGAGTTTTGGAGGGCCCTCAGTGAGCCAACCCAACC < 41bp 1 0.249519028230878 1 0.0877577364444733 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75520010 chr10:75520023 synonymous SNV . 0 34 hm5C_associated_SNPs_46382 0 0 1 1 75520002 75520024 mRNA hsa-miR-149 SEC24C miRanda miRanda
4614 chr2 170804116 170804116 1 + A C UCEC 170804126 + 170804106 170804146 41 TTAGTGTCAAACATGCGACACTTTATAAACTATGTTAGAGT TTAGTGTCAACCATGCGACACTTTATAAACTATGTTAGAGT < 41bp 1 0.0679460933766822 1 0.0408710539340973 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR3 ENSG00000144357 CDS Human protein_coding chr2:170804126 chr2:170804116 nonsynonymous SNV 0.999 3 11 hm5C_associated_SNPs_46411 0 0 0 1 170804112 170804133 mRNA hsa-miR-340 UBR3 miRanda miRanda
4615 chr7 158672548 158672548 1 + T C UCEC 158672551 + 158672531 158672571 41 AAAAGTAATTCATTCTCTGACAAAGGGGAAGAAAGACATAA AAAAGTAATTCATTCTCCGACAAAGGGGAAGAAAGACATAA < 41bp 1 0.18067978974394 1 0.362850606441498 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR60 ENSG00000126870 CDS Human protein_coding chr7:158672551 chr7:158672548 synonymous SNV . 0 18 hm5C_associated_SNPs_46423 0 0 1 1 158672527 158672548 mRNA hsa-miR-143 WDR60 miRanda miRanda
4616 chrX 73044555 73044555 1 - G A UCS 73044553 - 73044533 73044573 41 GAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAATGT GAGATCCAGACCGAAAGTTACTTAATTCAGCTTGCGAATGT < 41bp 1 0.143783248281228 1 0.0355349183082581 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044553 chrX:73044555 . . 0 19 hm5C_associated_SNPs_46472 0 0 1 2 73044552 73044573 lncRNA hsa-miR-3164 XIST miRanda starBase2
4617 chrX 73044555 73044555 1 - G A UCS 73044553 - 73044533 73044573 41 GAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAATGT GAGATCCAGACCGAAAGTTACTTAATTCAGCTTGCGAATGT < 41bp 1 0.143783248281228 1 0.0355349183082581 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044553 chrX:73044555 . . 0 19 hm5C_associated_SNPs_46472 0 0 1 2 73044552 73044573 lncRNA hsa-miR-6820-3p XIST miRanda starBase2
4618 chrX 73044555 73044555 1 - G A UCS 73044568 - 73044548 73044588 41 TGAAGTAATAGATGTGAGATCCAGACCGAAAGTCACTTAAT TGAAGTAATAGATGTGAGATCCAGACCGAAAGTTACTTAAT < 41bp 1 0.256653868657007 1 0.68556672334671 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044568 chrX:73044555 . . 0 34 hm5C_associated_SNPs_46473 0 0 1 2 73044552 73044573 lncRNA hsa-miR-3164 XIST miRanda starBase2
4619 chrX 73044555 73044555 1 - G A UCS 73044568 - 73044548 73044588 41 TGAAGTAATAGATGTGAGATCCAGACCGAAAGTCACTTAAT TGAAGTAATAGATGTGAGATCCAGACCGAAAGTTACTTAAT < 41bp 1 0.256653868657007 1 0.68556672334671 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044568 chrX:73044555 . . 0 34 hm5C_associated_SNPs_46473 0 0 1 2 73044552 73044573 lncRNA hsa-miR-6820-3p XIST miRanda starBase2
4620 chr20 36488358 36488358 1 + C T UCS 36488378 + 36488358 36488398 41 CGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG TGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG < 41bp 1 0.39865341393621 1 0.044287383556366 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488378 chr20:36488358 nonsynonymous SNV 0.997 4 1 hm5C_associated_SNPs_46523 0 0 1 6 36488337 36488358 mRNA hsa-let-7a CTNNBL1 miRanda miRanda
4621 chr20 36488358 36488358 1 + C T UCS 36488378 + 36488358 36488398 41 CGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG TGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG < 41bp 1 0.39865341393621 1 0.044287383556366 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488378 chr20:36488358 nonsynonymous SNV 0.997 4 1 hm5C_associated_SNPs_46523 0 0 1 6 36488337 36488358 mRNA hsa-let-7b CTNNBL1 miRanda miRanda
4622 chr20 36488358 36488358 1 + C T UCS 36488378 + 36488358 36488398 41 CGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG TGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG < 41bp 1 0.39865341393621 1 0.044287383556366 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488378 chr20:36488358 nonsynonymous SNV 0.997 4 1 hm5C_associated_SNPs_46523 0 0 1 6 36488337 36488358 mRNA hsa-let-7c CTNNBL1 miRanda miRanda
4623 chr20 36488358 36488358 1 + C T UCS 36488378 + 36488358 36488398 41 CGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG TGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG < 41bp 1 0.39865341393621 1 0.044287383556366 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488378 chr20:36488358 nonsynonymous SNV 0.997 4 1 hm5C_associated_SNPs_46523 0 0 1 6 36488337 36488358 mRNA hsa-let-7d CTNNBL1 miRanda miRanda
4624 chr20 36488358 36488358 1 + C T UCS 36488378 + 36488358 36488398 41 CGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG TGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG < 41bp 1 0.39865341393621 1 0.044287383556366 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488378 chr20:36488358 nonsynonymous SNV 0.997 4 1 hm5C_associated_SNPs_46523 0 0 1 6 36488337 36488358 mRNA hsa-let-7e CTNNBL1 miRanda miRanda
4625 chr20 36488358 36488358 1 + C T UCS 36488378 + 36488358 36488398 41 CGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG TGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG < 41bp 1 0.39865341393621 1 0.044287383556366 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488378 chr20:36488358 nonsynonymous SNV 0.997 4 1 hm5C_associated_SNPs_46523 0 0 1 6 36488337 36488358 mRNA hsa-let-7f CTNNBL1 miRanda miRanda
4626 chr6 31593371 31593371 1 + G A UVM 31593351 + 31593331 31593371 41 GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCA < 41bp 1 0.360454838219662 1 0.0941270291805267 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593351 chr6:31593371 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_46598 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
4627 chr6 31593371 31593371 1 + G A UVM 31593352 + 31593332 31593372 41 CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCAG < 41bp 1 0.360329432608389 1 0.140684545040131 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593352 chr6:31593371 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_46599 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
4628 chr6 31593371 31593371 1 + G A UVM 31593353 + 31593333 31593373 41 TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCAGA < 41bp 1 0.288224352695684 1 0.268606781959534 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593353 chr6:31593371 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_46600 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
4629 chr6 31593371 31593371 1 + G A UVM 31593388 + 31593368 31593408 41 CGCGGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC CGCAGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC < 41bp 1 0.646796459124704 1 0.727220773696899 experiment 0.706407081750592 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593388 chr6:31593371 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_46601 0 0 1 1 31593365 31593388 mRNA hsa-miR-488 BAT2 miRanda miRanda
4630 chr7 92987688 92987688 1 + T A LAML 92987685 + 92987665 92987705 41 GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGACAAAA GTTTGCCTGGGATCCCATATCAAAAAGAAAGCAAGACAAAA < 41bp 1 0.685062026746869 1 0.673618912696838 experiment 0.629875946506262 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92987685 chr7:92987688 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_46607 0 0 0 1 92987682 92987702 mRNA hsa-miR-431 CCDC132 miRanda miRanda
4631 chr17 38152546 38152546 1 + C T LAML 38152535 + 38152515 38152555 41 ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC ATTCCACCCGAGAGCCCCAGCTAGCCTTCCATCAGCGCATC < 41bp 1 0.381245905751617 1 0.111271113157272 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38152535 chr17:38152546 synonymous SNV . 0 32 hm5C_associated_SNPs_46660 0 0 1 1 38152529 38152551 mRNA hsa-miR-138 PSMD3 miRanda miRanda
4632 chr17 15907567 15907567 1 + C T LAML 15907552 + 15907532 15907572 41 TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCGCAGA TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGTGCAGA < 41bp 1 0.108902748247854 1 0.0754283368587494 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15907552 chr17:15907567 nonsynonymous SNV 0.995 1 36 hm5C_associated_SNPs_46665 0 0 1 2 15907545 15907568 mRNA hsa-miR-103 TTC19 miRanda miRanda
4633 chr17 15907567 15907567 1 + C T LAML 15907552 + 15907532 15907572 41 TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCGCAGA TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGTGCAGA < 41bp 1 0.108902748247854 1 0.0754283368587494 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15907552 chr17:15907567 nonsynonymous SNV 0.995 1 36 hm5C_associated_SNPs_46665 0 0 1 2 15907545 15907568 mRNA hsa-miR-107 TTC19 miRanda miRanda
4634 chr2 39944451 39944451 1 + C G rs182711713 39944451 + 39944431 39944471 41 GAGGGGAACAGCGCGGAGTTCAGGAGTCCAAGCACAAAGCG GAGGGGAACAGCGCGGAGTTGAGGAGTCCAAGCACAAAGCG Direct Loss 0.979879590088077 0 0.88381904 0.79770017 prediction 0.959759180176154 Functional Loss - TMEM178A ENSG00000152154 UTR3 Human protein_coding chr2:39944451 chr2:39944451 . . 0 21 hm5C_associated_SNPs_47014 0 0 0 2 39944447 39944467 mRNA hsa-miR-218 TMEM178 miRanda miRanda
4635 chr2 39944451 39944451 1 + C G rs182711713 39944451 + 39944431 39944471 41 GAGGGGAACAGCGCGGAGTTCAGGAGTCCAAGCACAAAGCG GAGGGGAACAGCGCGGAGTTGAGGAGTCCAAGCACAAAGCG Direct Loss 0.979879590088077 0 0.88381904 0.79770017 prediction 0.959759180176154 Functional Loss - TMEM178A ENSG00000152154 UTR3 Human protein_coding chr2:39944451 chr2:39944451 . . 0 21 hm5C_associated_SNPs_47014 0 0 0 2 39944437 39944459 mRNA hsa-miR-504 TMEM178 miRanda miRanda
4636 chr19 1535363 1535363 1 + C A rs56073142 1535363 + 1535343 1535383 41 GGGGAGGGCTGGGGGGCACACGGGAGGTGGGTTCTTGCCTT GGGGAGGGCTGGGGGGCACAAGGGAGGTGGGTTCTTGCCTT Direct Loss 0.976661190455802 0 0.92732346 0.91244346 prediction 0.953322380911605 Functional Loss - PLK5 ENSG00000185988 UTR3 Human protein_coding chr19:1535363 chr19:1535363 . . 0 21 hm5C_associated_SNPs_47153 0 0 0 1 1535362 1535382 mRNA hsa-miR-31 PLK5P miRanda miRanda
4637 chr2 219501314 219501314 1 + C T rs150976760 219501314 + 219501294 219501334 41 GTCCTGAGGTGGGCATTTCACGGGAAGGGTTGGTGTGCTGG GTCCTGAGGTGGGCATTTCATGGGAAGGGTTGGTGTGCTGG Direct Loss 0.975083001385435 0 0.9080663 0.7383314 prediction 0.95016600277087 Functional Loss - PLCD4 ENSG00000115556 UTR3 Human protein_coding chr2:219501314 chr2:219501314 . . 0 21 hm5C_associated_SNPs_47223 0 0 0 1 219501314 219501337 mRNA hsa-miR-15a PLCD4 miRanda miRanda
4638 chr5 141019656 141019656 1 - G A BLCA 141019656 - 141019636 141019676 41 GACCTGGGGCTGTGGCCTCTCAGGGGGCAGCCTCTCCATGG GACCTGGGGCTGTGGCCTCTTAGGGGGCAGCCTCTCCATGG Direct Loss 0.973662502720032 0 0.9668021 0.94809043 prediction 0.947325005440065 Functional Loss - RELL2 ENSG00000164620 CDS Human protein_coding chr5:141019656 chr5:141019656 nonsynonymous SNV 0.176 1 21 hm5C_associated_SNPs_47310 0 0 0 2 141019651 141019672 mRNA hsa-miR-125b FCHSD1 miRanda miRanda
4639 chr5 141019656 141019656 1 - G A BLCA 141019656 - 141019636 141019676 41 GACCTGGGGCTGTGGCCTCTCAGGGGGCAGCCTCTCCATGG GACCTGGGGCTGTGGCCTCTTAGGGGGCAGCCTCTCCATGG Direct Loss 0.973662502720032 0 0.9668021 0.94809043 prediction 0.947325005440065 Functional Loss - RELL2 ENSG00000164620 CDS Human protein_coding chr5:141019656 chr5:141019656 nonsynonymous SNV 0.176 1 21 hm5C_associated_SNPs_47310 0 0 0 2 141019651 141019674 mRNA hsa-miR-125a-5p FCHSD1 miRanda miRanda
4640 chr3 100148673 100148673 1 + C T SKCM 100148673 + 100148653 100148693 41 AGGAGGATCAGAGAGGACTCCGGGAACGCCACCGACTGCAA AGGAGGATCAGAGAGGACTCTGGGAACGCCACCGACTGCAA Direct Loss 0.973156913720589 0 0.90628135 0.8338393 prediction 0.946313827441179 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100148673 chr3:100148673 nonsynonymous SNV 0.738 3 21 hm5C_associated_SNPs_47357 0 0 0 1 100148652 100148675 mRNA hsa-miR-127-3p LNP1 miRanda miRanda
4641 chr19 51769091 51769091 1 + C T COAD 51769091 + 51769071 51769111 41 GATCCAGGGTGCTATCTATGCGGGAATTGTAATTGCGCTGC GATCCAGGGTGCTATCTATGTGGGAATTGTAATTGCGCTGC Direct Loss 0.97304248473441 0 0.8020841 0.44415727 prediction 0.946084969468821 Functional Loss - SIGLECL1 ENSG00000179213 CDS Human protein_coding chr19:51769091 chr19:51769091 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_47371 0 0 0 1 51769088 51769113 mRNA hsa-miR-503 C19orf75 miRanda miRanda
4642 chr3 41275738 41275738 1 + C T SKCM 41275738 + 41275718 41275758 41 AGTTGCTTGTTCGTGCACATCAGGATACCCAGCGCCGTACG AGTTGCTTGTTCGTGCACATTAGGATACCCAGCGCCGTACG Direct Loss 0.970646181438238 0 0.8894489 0.8767148 prediction 0.941292362876477 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275738 chr3:41275738 stopgain 0.586 1 21 hm5C_associated_SNPs_47525 0 0 1 1 41275715 41275738 mRNA hsa-miR-363 CTNNB1 miRanda miRanda
4643 chr4 48863493 48863493 1 + C G rs115452191 48863493 + 48863473 48863513 41 GTGGGAGGATTGCATGAGTCCAGGAGTTTGAGACCAGCCTG GTGGGAGGATTGCATGAGTCGAGGAGTTTGAGACCAGCCTG Direct Loss 0.970415016963167 0 0.8930348 0.8858646 prediction 0.940830033926334 Functional Loss - OCIAD1 ENSG00000109180 UTR3 Human protein_coding chr4:48863493 chr4:48863493 . . 0 21 hm5C_associated_SNPs_47544 0 0 0 1 48863485 48863505 mRNA hsa-miR-371-5p OCIAD1 miRanda miRanda
4644 chr19 1272363 1272363 1 + C A BLCA 1272363 + 1272343 1272383 41 GCCGCGCCCTGGTCTGGCCTCTGGGGTGAAGCTGCCTCTTG GCCGCGCCCTGGTCTGGCCTATGGGGTGAAGCTGCCTCTTG Direct Loss 0.968605228080771 0 0.90190655 0.90174925 prediction 0.937210456161541 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272363 chr19:1272363 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_47686 0 0 1 1 1272358 1272380 mRNA hsa-miR-708 CIRBP miRanda miRanda
4645 chr4 17625374 17625374 1 + C T LGG 17625374 + 17625354 17625394 41 CTCAGGGCTCCTTGGCCTACCTGGAGCAGGCATCTGCCAAC CTCAGGGCTCCTTGGCCTACTTGGAGCAGGCATCTGCCAAC Direct Loss 0.967267906442078 0 0.4140194 0.5325451 prediction 0.934535812884157 Functional Loss - MED28 ENSG00000118579 CDS Human protein_coding chr4:17625374 chr4:17625374 synonymous SNV . 0 21 hm5C_associated_SNPs_47782 0 0 1 1 17625370 17625392 mRNA hsa-miR-34a MED28 miRanda miRanda
4646 chr12 125550167 125550167 1 + C A UCEC 125550167 + 125550147 125550187 41 GCCCCGGTCGGGAGGAGATCCTGGAGTGCCAGGTGATGTGG GCCCCGGTCGGGAGGAGATCATGGAGTGCCAGGTGATGTGG Direct Loss 0.967147782501211 0 0.90147865 0.8879017 prediction 0.934295565002422 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125550167 chr12:125550167 nonsynonymous SNV 0.931 0 21 hm5C_associated_SNPs_47791 0 0 1 3 125550161 125550186 mRNA hsa-miR-362-3p AACS miRanda miRanda
4647 chr12 125550167 125550167 1 + C A UCEC 125550167 + 125550147 125550187 41 GCCCCGGTCGGGAGGAGATCCTGGAGTGCCAGGTGATGTGG GCCCCGGTCGGGAGGAGATCATGGAGTGCCAGGTGATGTGG Direct Loss 0.967147782501211 0 0.90147865 0.8879017 prediction 0.934295565002422 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125550167 chr12:125550167 nonsynonymous SNV 0.931 0 21 hm5C_associated_SNPs_47791 0 0 1 3 125550156 125550179 mRNA hsa-miR-422a AACS miRanda miRanda
4648 chr12 125550167 125550167 1 + C A UCEC 125550167 + 125550147 125550187 41 GCCCCGGTCGGGAGGAGATCCTGGAGTGCCAGGTGATGTGG GCCCCGGTCGGGAGGAGATCATGGAGTGCCAGGTGATGTGG Direct Loss 0.967147782501211 0 0.90147865 0.8879017 prediction 0.934295565002422 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125550167 chr12:125550167 nonsynonymous SNV 0.931 0 21 hm5C_associated_SNPs_47791 0 0 1 3 125550164 125550186 mRNA hsa-miR-329 AACS miRanda miRanda
4649 chr9 138441743 138441743 1 + C T SARC 138441743 + 138441723 138441763 41 AGACACAGAGCCCGGACCACCTGGACCTACCCTCCAGCCAT AGACACAGAGCCCGGACCACTTGGACCTACCCTCCAGCCAT Direct Loss 0.966798160242393 0 0.17259642 0.14964515 prediction 0.933596320484786 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138441743 chr9:138441743 synonymous SNV 0.013 0 21 hm5C_associated_SNPs_47818 0 0 0 2 138441732 138441757 mRNA hsa-let-7b OBP2A miRanda miRanda
4650 chr9 138441743 138441743 1 + C T SARC 138441743 + 138441723 138441763 41 AGACACAGAGCCCGGACCACCTGGACCTACCCTCCAGCCAT AGACACAGAGCCCGGACCACTTGGACCTACCCTCCAGCCAT Direct Loss 0.966798160242393 0 0.17259642 0.14964515 prediction 0.933596320484786 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138441743 chr9:138441743 synonymous SNV 0.013 0 21 hm5C_associated_SNPs_47818 0 0 0 2 138441732 138441757 mRNA hsa-let-7c OBP2A miRanda miRanda
4651 chr2 220099691 220099691 1 + C A HNSC 220099691 + 220099671 220099711 41 AGAAGGAGAAAAGCCGAGACCAGGAGGCTGGGGCACATCGG AGAAGGAGAAAAGCCGAGACAAGGAGGCTGGGGCACATCGG Direct Loss 0.966374846493136 0 0.91407263 0.8873673 prediction 0.932749692986272 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220099691 chr2:220099691 nonsynonymous SNV 0.032 0 21 hm5C_associated_SNPs_47857 0 0 1 1 220099689 220099709 mRNA hsa-miR-455-5p ANKZF1 miRanda miRanda
4652 chr22 42666026 42666026 1 + C T rs187166731 42666026 + 42666006 42666046 41 CACCCAAGGCCTCGCGCGACCAGCAGGTAGACCTTCCCTCC CACCCAAGGCCTCGCGCGACTAGCAGGTAGACCTTCCCTCC Direct Loss 0.966170881584307 0 0.7547095 0.19752535 prediction 0.932341763168614 Functional Loss - OGFRP1 ENSG00000182057 ncRNA_exonic Human lincRNA chr22:42666026 chr22:42666026 . . 0 21 hm5C_associated_SNPs_47882 0 1 0 1 42666009 42666031 mRNA hsa-miR-370 LOC388906 miRanda miRanda
4653 chr12 125576036 125576036 1 + C G LUAD 125576036 + 125576016 125576056 41 GCGGCAAGCATTGGTGCCATCTGGAGCTCCACGTCCCCGGA GCGGCAAGCATTGGTGCCATGTGGAGCTCCACGTCCCCGGA Direct Loss 0.965221383209155 0 0.9018222 0.87209415 prediction 0.93044276641831 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125576036 chr12:125576036 nonsynonymous SNV 0.957 3 21 hm5C_associated_SNPs_47964 0 0 1 1 125576015 125576036 mRNA hsa-miR-183 AACS miRanda miRanda
4654 chr12 54676893 54676893 1 + C G LIHC 54676893 + 54676873 54676913 41 AGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTATG AGGAGGCGGCCCTGGTTACTGTGGAGGAAGCAGAGGCTATG Direct Loss 0.964665361662888 0 0.5360369 0.4641318 prediction 0.929330723325775 Functional Loss - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54676893 chr12:54676893 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_48014 0 0 1 1 54676891 54676913 mRNA hsa-miR-875-5p HNRNPA1 miRanda miRanda
4655 chr19 45912960 45912960 1 + C G LUAD 45912960 + 45912940 45912980 41 ACTTTCAAGAAGGGCTCGTGCAGGACATCAAACAGCCTCCG ACTTTCAAGAAGGGCTCGTGGAGGACATCAAACAGCCTCCG Direct Loss 0.964536268307899 0 0.47409666 0.3571748 prediction 0.929072536615797 Functional Loss - ERCC1 ENSG00000012061 CDS Human protein_coding chr19:45912960 chr19:45912960 nonsynonymous SNV 0.786 0 21 hm5C_associated_SNPs_48029 0 0 1 1 45912960 45912979 mRNA hsa-miR-485-5p CD3EAP miRanda miRanda
4656 chr12 52285057 52285057 1 + C T UCEC 52285057 + 52285037 52285077 41 TCAGGATAGAGAAGAGGAAACAGGAGGAGGAGGCCAGAATG TCAGGATAGAGAAGAGGAAATAGGAGGAGGAGGCCAGAATG Direct Loss 0.964338744771562 0 0.8923476 0.90431523 prediction 0.928677489543124 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52285057 chr12:52285057 stopgain 0.818 1 21 hm5C_associated_SNPs_48047 0 0 0 1 52285051 52285074 mRNA hsa-miR-149 ANKRD33 miRanda miRanda
4657 chr12 58015609 58015609 1 + C A OV 58015609 + 58015589 58015629 41 CCGGCTACCCACGCCGATCCCGGGGGAAGTCGTCTTGGTGA CCGGCTACCCACGCCGATCCAGGGGGAAGTCGTCTTGGTGA Direct Loss 0.964335552316864 0 0.942259 0.9110259 prediction 0.928671104633727 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58015609 chr12:58015609 nonsynonymous SNV 0.476 4 21 hm5C_associated_SNPs_48048 0 0 1 1 58015609 58015625 mRNA hsa-miR-29b SLC26A10 miRanda miRanda
4658 chr16 67916623 67916623 1 + C T COAD 67916623 + 67916603 67916643 41 ACATGAAGAGCCGGAAGGCACGGGAACAGGAGGCCAGGGAG ACATGAAGAGCCGGAAGGCATGGGAACAGGAGGCCAGGGAG Direct Loss 0.964207532268031 0 0.89348125 0.81460357 prediction 0.928415064536062 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67916623 chr16:67916623 nonsynonymous SNV 0.961 3 21 hm5C_associated_SNPs_48060 0 0 1 1 67916611 67916633 lncRNA hsa-miR-1266-3p AC040162.3 miRanda starBase2
4659 chr1 205561360 205561360 1 + C T BLCA 205561360 + 205561340 205561380 41 GCAAGCCTGGGCCTGTTTCTCAGCAGCACCTTCCCCAGCAT GCAAGCCTGGGCCTGTTTCTTAGCAGCACCTTCCCCAGCAT Direct Loss 0.964026473446559 0 0.90852034 0.85507905 prediction 0.928052946893118 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561360 chr1:205561360 synonymous SNV . 0 21 hm5C_associated_SNPs_48068 0 0 0 2 205561348 205561372 mRNA hsa-miR-18a MFSD4 miRanda miRanda
4660 chr1 205561360 205561360 1 + C T BLCA 205561360 + 205561340 205561380 41 GCAAGCCTGGGCCTGTTTCTCAGCAGCACCTTCCCCAGCAT GCAAGCCTGGGCCTGTTTCTTAGCAGCACCTTCCCCAGCAT Direct Loss 0.964026473446559 0 0.90852034 0.85507905 prediction 0.928052946893118 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561360 chr1:205561360 synonymous SNV . 0 21 hm5C_associated_SNPs_48068 0 0 0 2 205561348 205561372 mRNA hsa-miR-18b MFSD4 miRanda miRanda
4661 chr10 73122283 73122283 1 + C T UCEC 73122283 + 73122263 73122303 41 CAGGGAGCTGGCTGAGGCCACGGGAGTGGTGATGTCCTTTT CAGGGAGCTGGCTGAGGCCATGGGAGTGGTGATGTCCTTTT Direct Loss 0.963131261272556 0 0.82356244 0.7735008 prediction 0.926262522545113 Functional Loss - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73122283 chr10:73122283 nonsynonymous SNV 0.670 4 21 hm5C_associated_SNPs_48144 0 0 1 1 73122274 73122295 mRNA hsa-miR-197 SLC29A3 miRanda miRanda
4662 chr9 131847514 131847514 1 + C T UCEC 131847514 + 131847494 131847534 41 ACAGCAGTGGGCACCAAGTACGGGATGCCCTCCAGCCATTC ACAGCAGTGGGCACCAAGTATGGGATGCCCTCCAGCCATTC Direct Loss 0.962928514218697 0 0.91022825 0.8845361 prediction 0.925857028437394 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847514 chr9:131847514 synonymous SNV . 0 21 hm5C_associated_SNPs_48160 0 0 0 1 131847504 131847522 mRNA hsa-miR-324-5p DOLPP1 miRanda miRanda
4663 chr6 54214608 54214608 1 + C T BRCA 54214608 + 54214588 54214628 41 GGTCTGATGGGCGAGGAAAACGGCATGCCACGAAGCCATGT GGTCTGATGGGCGAGGAAAATGGCATGCCACGAAGCCATGT Direct Loss 0.962376483859732 0 0.4924996 0.50629354 prediction 0.924752967719464 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54214608 chr6:54214608 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_48209 0 0 0 2 54214602 54214627 mRNA hsa-miR-135a TINAG miRanda miRanda
4664 chr6 54214608 54214608 1 + C T BRCA 54214608 + 54214588 54214628 41 GGTCTGATGGGCGAGGAAAACGGCATGCCACGAAGCCATGT GGTCTGATGGGCGAGGAAAATGGCATGCCACGAAGCCATGT Direct Loss 0.962376483859732 0 0.4924996 0.50629354 prediction 0.924752967719464 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54214608 chr6:54214608 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_48209 0 0 0 2 54214602 54214627 mRNA hsa-miR-135b TINAG miRanda miRanda
4665 chr4 44691392 44691392 1 + C T UCEC 44691392 + 44691372 44691412 41 ATTCCAGTGTGACCGTTCATCGGGATAGTAGCCTTGCTCTG ATTCCAGTGTGACCGTTCATTGGGATAGTAGCCTTGCTCTG Direct Loss 0.960917221936244 0 0.9275303 0.8791776 prediction 0.921834443872488 Functional Loss - GUF1 ENSG00000151806 CDS Human protein_coding chr4:44691392 chr4:44691392 nonsynonymous SNV 0.986 3 21 hm5C_associated_SNPs_48374 0 0 1 1 44691386 44691407 mRNA hsa-miR-506 GUF1 miRanda miRanda
4666 chr8 9192395 9192395 1 + C G rs77410003 9192395 + 9192375 9192415 41 GGTAATGAGGGTGGAGTTCTCAGGAATAGGATTGGTGCTCT GGTAATGAGGGTGGAGTTCTGAGGAATAGGATTGGTGCTCT Direct Loss 0.960331643229051 0 0.9200472 0.7271932 prediction 0.920663286458102 Functional Loss - LOC157273 ENSG00000254235 ncRNA_exonic Human lincRNA chr8:9192395 chr8:9192395 . . 0 21 hm5C_associated_SNPs_48435 0 0 0 3 9192392 9192414 mRNA hsa-miR-29a LOC157273 miRanda miRanda
4667 chr8 9192395 9192395 1 + C G rs77410003 9192395 + 9192375 9192415 41 GGTAATGAGGGTGGAGTTCTCAGGAATAGGATTGGTGCTCT GGTAATGAGGGTGGAGTTCTGAGGAATAGGATTGGTGCTCT Direct Loss 0.960331643229051 0 0.9200472 0.7271932 prediction 0.920663286458102 Functional Loss - LOC157273 ENSG00000254235 ncRNA_exonic Human lincRNA chr8:9192395 chr8:9192395 . . 0 21 hm5C_associated_SNPs_48435 0 0 0 3 9192392 9192414 mRNA hsa-miR-29b LOC157273 miRanda miRanda
4668 chr8 9192395 9192395 1 + C G rs77410003 9192395 + 9192375 9192415 41 GGTAATGAGGGTGGAGTTCTCAGGAATAGGATTGGTGCTCT GGTAATGAGGGTGGAGTTCTGAGGAATAGGATTGGTGCTCT Direct Loss 0.960331643229051 0 0.9200472 0.7271932 prediction 0.920663286458102 Functional Loss - LOC157273 ENSG00000254235 ncRNA_exonic Human lincRNA chr8:9192395 chr8:9192395 . . 0 21 hm5C_associated_SNPs_48435 0 0 0 3 9192393 9192414 mRNA hsa-miR-29c LOC157273 miRanda miRanda
4669 chr10 42972764 42972764 1 + C G rs149054476 42972764 + 42972744 42972784 41 AGGCAGTGACGCAGCAACAGCGCGAGGCGACTTTGGAGCGG AGGCAGTGACGCAGCAACAGGGCGAGGCGACTTTGGAGCGG Direct Loss 0.959028545053475 0 0.48944637 0.67654854 prediction 0.918057090106949 Functional Loss - LINC00839 ENSG00000185904 ncRNA_exonic Human lincRNA chr10:42972764 chr10:42972764 . . 0 21 hm5C_associated_SNPs_48580 0 0 0 2 42972757 42972778 mRNA hsa-miR-93 LOC84856 miRanda miRanda
4670 chr10 42972764 42972764 1 + C G rs149054476 42972764 + 42972744 42972784 41 AGGCAGTGACGCAGCAACAGCGCGAGGCGACTTTGGAGCGG AGGCAGTGACGCAGCAACAGGGCGAGGCGACTTTGGAGCGG Direct Loss 0.959028545053475 0 0.48944637 0.67654854 prediction 0.918057090106949 Functional Loss - LINC00839 ENSG00000185904 ncRNA_exonic Human lincRNA chr10:42972764 chr10:42972764 . . 0 21 hm5C_associated_SNPs_48580 0 0 0 2 42972756 42972778 mRNA hsa-miR-519d LOC84856 miRanda miRanda
4671 chr4 186320890 186320890 1 - G A rs144479244 186320890 - 186320870 186320910 41 ACTGGTATTTTCTACACTTCCGAGACTCCGTTTCTGTCTGA ACTGGTATTTTCTACACTTCTGAGACTCCGTTTCTGTCTGA Direct Loss 0.957856161504542 0 0.43488464 0.21248114 prediction 0.915712323009083 Functional Loss - ANKRD37 ENSG00000186352 CDS Human protein_coding chr4:186320890 chr4:186320890 nonsynonymous SNV 0.433 0 21 hm5C_associated_SNPs_48719 0 0 1 2 186320889 186320910 mRNA hsa-miR-1 UFSP2 miRanda miRanda
4672 chr4 186320890 186320890 1 - G A rs144479244 186320890 - 186320870 186320910 41 ACTGGTATTTTCTACACTTCCGAGACTCCGTTTCTGTCTGA ACTGGTATTTTCTACACTTCTGAGACTCCGTTTCTGTCTGA Direct Loss 0.957856161504542 0 0.43488464 0.21248114 prediction 0.915712323009083 Functional Loss - ANKRD37 ENSG00000186352 CDS Human protein_coding chr4:186320890 chr4:186320890 nonsynonymous SNV 0.433 0 21 hm5C_associated_SNPs_48719 0 0 1 2 186320889 186320910 mRNA hsa-miR-206 UFSP2 miRanda miRanda
4673 chr5 133727424 133727424 1 + C T rs181009937 133727424 + 133727404 133727444 41 AGCACTTTGGGAGGCAAAGGCGGGAGGATCACTTGAGGCCA AGCACTTTGGGAGGCAAAGGTGGGAGGATCACTTGAGGCCA Direct Loss 0.957841624312908 0 0.93803 0.9186985 prediction 0.915683248625816 Functional Loss - UBE2B ENSG00000119048 UTR3 Human protein_coding chr5:133727424 chr5:133727424 . . 0 21 hm5C_associated_SNPs_48723 0 0 1 1 133727421 133727446 mRNA hsa-miR-149 UBE2B miRanda miRanda
4674 chr1 197887022 197887022 1 + C T PCPG 197887022 + 197887002 197887042 41 CCCCCAGCCATGCTCTTTCACGGGATCTCCGGAGGCCACAT CCCCCAGCCATGCTCTTTCATGGGATCTCCGGAGGCCACAT Direct Loss 0.957542643556443 0 0.9143644 0.85582006 prediction 0.915085287112885 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197887022 chr1:197887022 synonymous SNV . 0 21 hm5C_associated_SNPs_48762 0 0 0 1 197887021 197887043 mRNA hsa-miR-455-5p LHX9 miRanda miRanda
4675 chr6 41621387 41621387 1 + C T rs74973041 41621387 + 41621367 41621407 41 CCTCTGAGTGGGGCCAGGCCCAGGACTGTCACACAAGGCTT CCTCTGAGTGGGGCCAGGCCTAGGACTGTCACACAAGGCTT Direct Loss 0.957403636978271 0 0.76495624 0.44409984 prediction 0.914807273956542 Functional Loss - MDFI ENSG00000112559 UTR3 Human protein_coding chr6:41621387 chr6:41621387 . . 0 21 hm5C_associated_SNPs_48779 0 0 0 1 41621378 41621399 mRNA hsa-miR-542-3p MDFI miRanda miRanda
4676 chr3 9960070 9960070 1 + C T rs708567 9960070 + 9960050 9960090 41 GTTTGGAGGAGCAGCTGACTCAGGGGTGGAGGAGCCTAGGA GTTTGGAGGAGCAGCTGACTTAGGGGTGGAGGAGCCTAGGA Direct Loss 0.957238882344985 0 0.93523467 0.905218 prediction 0.914477764689971 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9960070 chr3:9960070 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_48798 0 0 1 2 9960054 9960075 mRNA hsa-miR-125b IL17RC miRanda miRanda
4677 chr3 9960070 9960070 1 + C T rs708567 9960070 + 9960050 9960090 41 GTTTGGAGGAGCAGCTGACTCAGGGGTGGAGGAGCCTAGGA GTTTGGAGGAGCAGCTGACTTAGGGGTGGAGGAGCCTAGGA Direct Loss 0.957238882344985 0 0.93523467 0.905218 prediction 0.914477764689971 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9960070 chr3:9960070 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_48798 0 0 1 2 9960052 9960075 mRNA hsa-miR-125a-5p IL17RC miRanda miRanda
4678 chr15 79045594 79045594 1 + C T UCEC 79045594 + 79045574 79045614 41 GTGAGGACTTCCTGCATGAGCGGGACACCAGCCCTGACAAG GTGAGGACTTCCTGCATGAGTGGGACACCAGCCCTGACAAG Direct Loss 0.95703900174257 0 0.8936074 0.45306125 prediction 0.91407800348514 Functional Loss - LOC646938 ENSG00000238166 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:79045594 chr15:79045594 . . 0 21 hm5C_associated_SNPs_48828 0 0 0 1 79045585 79045606 mRNA hsa-miR-138 LOC646938 miRanda miRanda
4679 chr19 10132662 10132662 1 + C T rs2287801 10132662 + 10132642 10132682 41 TTGGCCTGGGAAGCCCAGAGCAGGAAGCCACAGCTGTCTCT TTGGCCTGGGAAGCCCAGAGTAGGAAGCCACAGCTGTCTCT Direct Loss 0.956858026239344 0 0.7179259 0.33613342 prediction 0.913716052478689 Functional Loss - RDH8 ENSG00000080511 UTR3 Human protein_coding chr19:10132662 chr19:10132662 . . 0 21 hm5C_associated_SNPs_48852 0 0 0 1 10132648 10132672 mRNA hsa-miR-328 RDH8 miRanda miRanda
4680 chr17 18638554 18638554 1 + C G CESC 18638554 + 18638534 18638574 41 CCACTCAAAGCTGGCCCTTTCTGGAGGCTCGGGGTCTATAT CCACTCAAAGCTGGCCCTTTGTGGAGGCTCGGGGTCTATAT Direct Loss 0.956092760278707 0 0.9271232 0.91572285 prediction 0.912185520557415 Functional Loss - TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18638554 chr17:18638554 nonsynonymous SNV 0.436 0 21 hm5C_associated_SNPs_48951 0 0 1 1 18638545 18638566 mRNA hsa-miR-615-3p TRIM16L miRanda miRanda
4681 chr19 53989969 53989969 1 + C T UCEC 53989969 + 53989949 53989989 41 CCTGCTCAGAGGACTCTATACAGGGACGTGATGCTGGAGAA CCTGCTCAGAGGACTCTATATAGGGACGTGATGCTGGAGAA Direct Loss 0.956071104773278 0 0.93609375 0.66554534 prediction 0.912142209546555 Functional Loss - ZNF813 ENSG00000198346 CDS Human protein_coding chr19:53989969 chr19:53989969 synonymous SNV . 0 21 hm5C_associated_SNPs_48954 0 0 0 1 53989966 53989986 mRNA hsa-miR-338-3p ZNF765 miRanda miRanda
4682 chr7 89866428 89866428 1 + C T rs17866173 89866428 + 89866408 89866448 41 TGCTGGGATTGTGGATATAACAGGAGCCCTGGCAGCTGTCT TGCTGGGATTGTGGATATAATAGGAGCCCTGGCAGCTGTCT Direct Loss 0.955956134370255 0 0.45869863 0.20195463 prediction 0.91191226874051 Functional Loss - STEAP2 ENSG00000157214 UTR3 Human protein_coding chr7:89866428 chr7:89866428 . . 0 21 hm5C_associated_SNPs_48972 0 0 1 1 89866424 89866445 mRNA hsa-miR-22 STEAP2 miRanda miRanda
4683 chr13 24466084 24466084 1 + C T SKCM 24466084 + 24466064 24466104 41 CCCCTGAGGCCCAGTCTCTCCTCGGAGGCCTTTCTCTCCCA CCCCTGAGGCCCAGTCTCTCTTCGGAGGCCTTTCTCTCCCA Direct Loss 0.955822092523957 0 0.63655174 0.8697153 prediction 0.911644185047913 Functional Loss - C1QTNF9B ENSG00000205863 CDS Human protein_coding chr13:24466084 chr13:24466084 nonsynonymous SNV 0.320 5 21 hm5C_associated_SNPs_48991 0 0 1 2 24466084 24466103 mRNA hsa-miR-185 PCOTH miRanda miRanda
4684 chr13 24466084 24466084 1 + C T SKCM 24466084 + 24466064 24466104 41 CCCCTGAGGCCCAGTCTCTCCTCGGAGGCCTTTCTCTCCCA CCCCTGAGGCCCAGTCTCTCTTCGGAGGCCTTTCTCTCCCA Direct Loss 0.955822092523957 0 0.63655174 0.8697153 prediction 0.911644185047913 Functional Loss - C1QTNF9B ENSG00000205863 CDS Human protein_coding chr13:24466084 chr13:24466084 nonsynonymous SNV 0.320 5 21 hm5C_associated_SNPs_48991 0 0 1 2 24466071 24466085 mRNA hsa-miR-185 PCOTH miRanda miRanda
4685 chr6 17292121 17292121 1 + C A OV 17292121 + 17292101 17292141 41 AGCTGCATACGCACAATACTCAGCAGCTGCTGCTGCTGCCG AGCTGCATACGCACAATACTAAGCAGCTGCTGCTGCTGCCG Direct Loss 0.955809038321062 0 0.8562543 0.35678813 prediction 0.911618076642124 Functional Loss - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292121 chr6:17292121 stopgain 0.602 1 21 hm5C_associated_SNPs_48995 0 0 0 1 17292101 17292122 mRNA hsa-miR-496 RBM24 miRanda miRanda
4686 chr10 4873008 4873008 1 + C T GBM 4873008 + 4872988 4873028 41 TCAAGGAAGGCGCTGTAAGACGGGAGGATCTGTTCATTGCC TCAAGGAAGGCGCTGTAAGATGGGAGGATCTGTTCATTGCC Direct Loss 0.955792125540493 0 0.48148486 0.32373166 prediction 0.911584251080985 Functional Loss - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4873008 chr10:4873008 nonsynonymous SNV 0.021 4 21 hm5C_associated_SNPs_48997 0 0 0 1 4872998 4873022 mRNA hsa-miR-212 AKR1E2 miRanda miRanda
4687 chr3 136708404 136708404 1 + C T UCEC 136708404 + 136708384 136708424 41 TGGAGGAGGGAGCCTGGTGCCGAGGTGAGACTCCAGCCTTG TGGAGGAGGGAGCCTGGTGCTGAGGTGAGACTCCAGCCTTG Direct Loss 0.954835899022723 0 0.9230541 0.9062861 prediction 0.909671798045445 Functional Loss - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136708404 chr3:136708404 synonymous SNV . 0 21 hm5C_associated_SNPs_49119 0 0 0 1 136708394 136708407 mRNA hsa-miR-328 IL20RB miRanda miRanda
4688 chr12 9219147 9219147 1 + C T rs138746182 9219147 + 9219127 9219167 41 GTCTCAATCTCCCTTGGATCCGGGATCCAGGTTGGTAGCAA GTCTCAATCTCCCTTGGATCTGGGATCCAGGTTGGTAGCAA Direct Loss 0.953890444466468 0 0.89448893 0.7212126 prediction 0.907780888932936 Functional Loss - A2M-AS1 ENSG00000245105 ncRNA_exonic Human antisense chr12:9219147 chr12:9219147 . . 0 21 hm5C_associated_SNPs_49242 0 0 0 1 9219136 9219160 mRNA hsa-miR-490-3p LOC144571 miRanda miRanda
4689 chr3 9743591 9743591 1 + C T UVM 9743591 + 9743571 9743611 41 CCCAGTCCTTCCGGTGCCATCGGGGGCCTGCTGGAGCAATT CCCAGTCCTTCCGGTGCCATTGGGGGCCTGCTGGAGCAATT Direct Loss 0.952982841782562 0 0.94222164 0.9074247 prediction 0.905965683565125 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9743591 chr3:9743591 synonymous SNV . 0 21 hm5C_associated_SNPs_49360 0 0 1 1 9743583 9743604 mRNA hsa-miR-214 MTMR14 miRanda miRanda
4690 chr1 156108491 156108491 1 + C A rs117939448 156108491 + 156108471 156108511 41 GGCAGTGGGGGTGGCAGCTTCGGGGACAATCTGGTCACCCG GGCAGTGGGGGTGGCAGCTTAGGGGACAATCTGGTCACCCG Direct Loss 0.952849889406576 0 0.93482685 0.9073322 prediction 0.905699778813152 Functional Loss - LMNA ENSG00000160789 CDS Human protein_coding chr1:156108491 chr1:156108491 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_49383 0 0 1 2 156108482 156108502 mRNA hsa-miR-219-5p LMNA miRanda miRanda
4691 chr1 156108491 156108491 1 + C A rs117939448 156108491 + 156108471 156108511 41 GGCAGTGGGGGTGGCAGCTTCGGGGACAATCTGGTCACCCG GGCAGTGGGGGTGGCAGCTTAGGGGACAATCTGGTCACCCG Direct Loss 0.952849889406576 0 0.93482685 0.9073322 prediction 0.905699778813152 Functional Loss - LMNA ENSG00000160789 CDS Human protein_coding chr1:156108491 chr1:156108491 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_49383 0 0 1 2 156108488 156108509 mRNA hsa-miR-542-3p LMNA miRanda miRanda
4692 chr2 86439855 86439855 1 + C T rs370852770 86439855 + 86439835 86439875 41 GCTGACAGGCACATAACTTACGGGAAAGGGAATTTCATACA GCTGACAGGCACATAACTTATGGGAAAGGGAATTTCATACA Direct Loss 0.952790707271706 0 0.8113618 0.61551535 prediction 0.905581414543412 Functional Loss - MRPL35 ENSG00000132313 UTR3 Human protein_coding chr2:86439855 chr2:86439855 . . 0 21 hm5C_associated_SNPs_49389 0 0 1 2 86439843 86439866 mRNA hsa-miR-204 MRPL35 miRanda miRanda
4693 chr2 86439855 86439855 1 + C T rs370852770 86439855 + 86439835 86439875 41 GCTGACAGGCACATAACTTACGGGAAAGGGAATTTCATACA GCTGACAGGCACATAACTTATGGGAAAGGGAATTTCATACA Direct Loss 0.952790707271706 0 0.8113618 0.61551535 prediction 0.905581414543412 Functional Loss - MRPL35 ENSG00000132313 UTR3 Human protein_coding chr2:86439855 chr2:86439855 . . 0 21 hm5C_associated_SNPs_49389 0 0 1 2 86439845 86439866 mRNA hsa-miR-211 MRPL35 miRanda miRanda
4694 chr9 114423992 114423992 1 + C A READ 114423992 + 114423972 114424012 41 GAGGCTGGCGTGGAGAGGATCAAGGTGCGGGCCCCGGGTAC GAGGCTGGCGTGGAGAGGATAAAGGTGCGGGCCCCGGGTAC Direct Loss 0.952699362880811 0 0.90110314 0.83945274 prediction 0.905398725761622 Functional Loss - GNG10 ENSG00000242616 CDS Human protein_coding chr9:114423992 chr9:114423992 synonymous SNV . 0 21 hm5C_associated_SNPs_49403 0 0 1 1 114423992 114423995 mRNA hsa-miR-22 GNG10 miRanda miRanda
4695 chr12 49745462 49745462 1 + C T rs368793002 49745462 + 49745442 49745482 41 AGGCCGAGGCGGGCAGATCACGAGGTCAGGAGTTCGAGACC AGGCCGAGGCGGGCAGATCATGAGGTCAGGAGTTCGAGACC Direct Loss 0.952515386440014 0 0.94129175 0.9163506 prediction 0.905030772880027 Functional Loss - DNAJC22 ENSG00000178401 UTR3 Human protein_coding chr12:49745462 chr12:49745462 . . 0 21 hm5C_associated_SNPs_49431 0 0 0 1 49745462 49745485 mRNA hsa-miR-149 DNAJC22 miRanda miRanda
4696 chr16 67861873 67861873 1 + C G HNSC 67861873 + 67861853 67861893 41 ACATCAGGCGTGTGGGACCTCGAGAGCCAGAGCCTGCAAGC ACATCAGGCGTGTGGGACCTGGAGAGCCAGAGCCTGCAAGC Direct Loss 0.952093098000511 0 0.84765375 0.50667155 prediction 0.904186196001022 Functional Loss - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67861873 chr16:67861873 nonsynonymous SNV 0.356 3 21 hm5C_associated_SNPs_49480 0 0 0 1 67861860 67861883 mRNA hsa-miR-149 TSNAXIP1 miRanda miRanda
4697 chr15 41063244 41063244 1 + C G rs1866170 41063244 + 41063224 41063264 41 GGGGTGAGGGTGGGCAAAGCCGGGGTGACTGGAAGATCCAG GGGGTGAGGGTGGGCAAAGCGGGGGTGACTGGAAGATCCAG Direct Loss 0.951808241957298 0 0.9084232 0.90964663 prediction 0.903616483914595 Functional Loss - C15orf62 ENSG00000188277 UTR3 Human protein_coding chr15:41063244 chr15:41063244 . . 0 21 hm5C_associated_SNPs_49513 0 0 0 2 41063244 41063265 mRNA hsa-miR-378 C15orf62 miRanda miRanda
4698 chr15 41063244 41063244 1 + C G rs1866170 41063244 + 41063224 41063264 41 GGGGTGAGGGTGGGCAAAGCCGGGGTGACTGGAAGATCCAG GGGGTGAGGGTGGGCAAAGCGGGGGTGACTGGAAGATCCAG Direct Loss 0.951808241957298 0 0.9084232 0.90964663 prediction 0.903616483914595 Functional Loss - C15orf62 ENSG00000188277 UTR3 Human protein_coding chr15:41063244 chr15:41063244 . . 0 21 hm5C_associated_SNPs_49513 0 0 0 2 41063243 41063265 mRNA hsa-miR-422a C15orf62 miRanda miRanda
4699 chr19 58115732 58115732 1 + C T LUSC 58115732 + 58115712 58115752 41 AGATGCAGAGGCTCCTGTACCGCGATGTGATGCTGGAGAAC AGATGCAGAGGCTCCTGTACTGCGATGTGATGCTGGAGAAC Direct Loss 0.951782786608319 0 0.62997526 0.2982778 prediction 0.903565573216638 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58115732 chr19:58115732 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49517 0 0 0 1 58115727 58115748 mRNA hsa-miR-338-3p ZNF530 miRanda miRanda
4700 chr4 47034468 47034468 1 + C T UCEC 47034468 + 47034448 47034488 41 GTTGGGATGCGGATCGATGTCGCCAGCATAGACATGGTCTC GTTGGGATGCGGATCGATGTTGCCAGCATAGACATGGTCTC Direct Loss 0.951781444567402 0 0.16553083 0.08153784 prediction 0.903562889134804 Functional Loss - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47034468 chr4:47034468 synonymous SNV . 0 21 hm5C_associated_SNPs_49518 0 0 0 1 47034461 47034481 mRNA hsa-miR-431 GABRB1 miRanda miRanda
4701 chrX 123480537 123480537 1 + C T CESC 123480537 + 123480517 123480557 41 GGCAAAATCAGCAGGGAAACCGGCGAGAAGCTCCTGCTTGC GGCAAAATCAGCAGGGAAACTGGCGAGAAGCTCCTGCTTGC Direct Loss 0.950624410187316 0 0.89299375 0.816017 prediction 0.901248820374633 Functional Loss - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123480537 chrX:123480537 synonymous SNV . 0 21 hm5C_associated_SNPs_49660 0 0 0 2 123480531 123480552 mRNA hsa-miR-28-5p SH2D1A miRanda miRanda
4702 chrX 123480537 123480537 1 + C T CESC 123480537 + 123480517 123480557 41 GGCAAAATCAGCAGGGAAACCGGCGAGAAGCTCCTGCTTGC GGCAAAATCAGCAGGGAAACTGGCGAGAAGCTCCTGCTTGC Direct Loss 0.950624410187316 0 0.89299375 0.816017 prediction 0.901248820374633 Functional Loss - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123480537 chrX:123480537 synonymous SNV . 0 21 hm5C_associated_SNPs_49660 0 0 0 2 123480530 123480552 mRNA hsa-miR-708 SH2D1A miRanda miRanda
4703 chr3 122545733 122545733 1 + C G CESC 122545733 + 122545713 122545753 41 TCTCTCTACGACGTGGTTTTCTGCAGATGAAAGGGCCACAG TCTCTCTACGACGTGGTTTTGTGCAGATGAAAGGGCCACAG Direct Loss 0.950403271402209 0 0.22167113 0.1347256 prediction 0.900806542804419 Functional Loss - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122545733 chr3:122545733 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49699 0 0 0 1 122545727 122545751 mRNA hsa-miR-328 DIRC2 miRanda miRanda
4704 chr21 46021934 46021934 1 + C T rs398680 46021934 + 46021914 46021954 41 TAGCCCGGTGTGGGGAGAAACGAGGGTAGACACGTACCAAC TAGCCCGGTGTGGGGAGAAATGAGGGTAGACACGTACCAAC Direct Loss 0.950265359134234 0 0.93252414 0.9190804 prediction 0.900530718268469 Functional Loss - KRTAP10-7 ENSG00000205441 UTR3 Human other chr21:46021934 chr21:46021934 . . 0 21 hm5C_associated_SNPs_49724 0 0 0 2 46021927 46021948 mRNA hsa-miR-187 KRTAP10-7 miRanda miRanda
4705 chr21 46021934 46021934 1 + C T rs398680 46021934 + 46021914 46021954 41 TAGCCCGGTGTGGGGAGAAACGAGGGTAGACACGTACCAAC TAGCCCGGTGTGGGGAGAAATGAGGGTAGACACGTACCAAC Direct Loss 0.950265359134234 0 0.93252414 0.9190804 prediction 0.900530718268469 Functional Loss - KRTAP10-7 ENSG00000205441 UTR3 Human other chr21:46021934 chr21:46021934 . . 0 21 hm5C_associated_SNPs_49724 0 0 0 2 46021926 46021951 mRNA hsa-miR-142-3p KRTAP10-7 miRanda miRanda
4706 chr10 1046670 1046670 1 + C T BLCA 1046670 + 1046650 1046690 41 CTGGAGGATAGGAACACCATCGAGATGCAGGCCATCACTGC CTGGAGGATAGGAACACCATTGAGATGCAGGCCATCACTGC Direct Loss 0.950224706568835 0 0.7582443 0.43914863 prediction 0.90044941313767 Functional Loss - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1046670 chr10:1046670 synonymous SNV . 0 21 hm5C_associated_SNPs_49729 0 0 1 1 1046669 1046692 mRNA hsa-miR-34c-5p GTPBP4 miRanda miRanda
4707 chr1 229431652 229431652 1 + C T PRAD 229431652 + 229431632 229431672 41 GCTCTCCTCGTCTATGATATCACCAGGTAATGCCAGCTCCC GCTCTCCTCGTCTATGATATTACCAGGTAATGCCAGCTCCC Direct Loss 0.949377508362688 0 0.517538 0.47639072 prediction 0.898755016725375 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431652 chr1:229431652 synonymous SNV 1.000 0 21 hm5C_associated_SNPs_49820 0 0 1 2 229431652 229431657 mRNA hsa-miR-222 RAB4A miRanda miRanda
4708 chr1 229431652 229431652 1 + C T PRAD 229431652 + 229431632 229431672 41 GCTCTCCTCGTCTATGATATCACCAGGTAATGCCAGCTCCC GCTCTCCTCGTCTATGATATTACCAGGTAATGCCAGCTCCC Direct Loss 0.949377508362688 0 0.517538 0.47639072 prediction 0.898755016725375 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431652 chr1:229431652 synonymous SNV 1.000 0 21 hm5C_associated_SNPs_49820 0 0 1 2 229431639 229431657 mRNA hsa-miR-138 RAB4A miRanda miRanda
4709 chr3 184086034 184086034 1 + C T ESCA 184086034 + 184086014 184086054 41 GCCAACAACCTGCATGGATTCGAGGTGGACTCCAGAGTTTA GCCAACAACCTGCATGGATTTGAGGTGGACTCCAGAGTTTA Direct Loss 0.94913636436964 0 0.9130746 0.89153814 prediction 0.89827272873928 Functional Loss - POLR2H ENSG00000163882 CDS Human protein_coding chr3:184086034 chr3:184086034 stopgain 0.997 0 21 hm5C_associated_SNPs_49859 0 0 1 1 184086031 184086053 mRNA hsa-miR-490-3p POLR2H miRanda miRanda
4710 chr11 113860342 113860342 1 + C T UCEC 113860342 + 113860322 113860362 41 TCCGGCAATTCCTGGAAAAGCGGGATGAGATCCGAGAGGTG TCCGGCAATTCCTGGAAAAGTGGGATGAGATCCGAGAGGTG Direct Loss 0.949088548387839 0 0.8755554 0.57857525 prediction 0.898177096775678 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113860342 chr11:113860342 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_49867 0 0 0 1 113860335 113860356 mRNA hsa-miR-127-3p HTR3A miRanda miRanda
4711 chr19 47712512 47712512 1 + C G HNSC 47712512 + 47712492 47712532 41 GCCTTGGCCCCAAGTGAACTCAAGATTTGGCAGCCCCAGAG GCCTTGGCCCCAAGTGAACTGAAGATTTGGCAGCCCCAGAG Direct Loss 0.948451505538538 0 0.8363874 0.4271873 prediction 0.896903011077075 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47712512 chr19:47712512 stopgain 0.000 0 21 hm5C_associated_SNPs_49960 0 0 1 2 47712508 47712533 mRNA hsa-miR-330-5p SAE1 miRanda miRanda
4712 chr19 47712512 47712512 1 + C G HNSC 47712512 + 47712492 47712532 41 GCCTTGGCCCCAAGTGAACTCAAGATTTGGCAGCCCCAGAG GCCTTGGCCCCAAGTGAACTGAAGATTTGGCAGCCCCAGAG Direct Loss 0.948451505538538 0 0.8363874 0.4271873 prediction 0.896903011077075 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47712512 chr19:47712512 stopgain 0.000 0 21 hm5C_associated_SNPs_49960 0 0 1 2 47712509 47712533 mRNA hsa-miR-330-5p SAE1 miRanda miRanda
4713 chr2 25042625 25042625 1 + C G rs1044040 25042625 + 25042605 25042645 41 GGGGACACTACAGGCACACACAGGAATAGCAGGGCCACCCT GGGGACACTACAGGCACACAGAGGAATAGCAGGGCCACCCT Direct Loss 0.948132350530056 0 0.91753423 0.91293734 prediction 0.896264701060113 Functional Loss - ADCY3;CENPO ENSG00000138031;ENSG00000138092 UTR3 Human other chr2:25042625 chr2:25042625 . . 0 21 hm5C_associated_SNPs_50009 0 0 0 1 25042620 25042642 mRNA hsa-miR-328 CENPO miRanda miRanda
4714 chr8 10555357 10555357 1 + C G OV 10555357 + 10555337 10555377 41 TGGACAGGGACTTGTGGATCCACGAGCAGCAGGTGGCCACA TGGACAGGGACTTGTGGATCGACGAGCAGCAGGTGGCCACA Direct Loss 0.947835656496756 0 0.19067413 0.28523958 prediction 0.895671312993512 Functional Loss - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10555357 chr8:10555357 nonsynonymous SNV 0.003 1 21 hm5C_associated_SNPs_50059 0 0 0 1 10555348 10555370 mRNA hsa-miR-370 C8orf74 miRanda miRanda
4715 chr1 229431628 229431628 1 + C T UCEC 229431628 + 229431608 229431648 41 AGTTATTACCGAGGCGCGGCCGGGGCTCTCCTCGTCTATGA AGTTATTACCGAGGCGCGGCTGGGGCTCTCCTCGTCTATGA Direct Loss 0.947686076417229 0 0.8961743 0.8576143 prediction 0.895372152834458 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431628 chr1:229431628 synonymous SNV . 0 21 hm5C_associated_SNPs_50085 0 0 1 2 229431627 229431649 mRNA hsa-miR-376a RAB4A miRanda miRanda
4716 chr1 229431628 229431628 1 + C T UCEC 229431628 + 229431608 229431648 41 AGTTATTACCGAGGCGCGGCCGGGGCTCTCCTCGTCTATGA AGTTATTACCGAGGCGCGGCTGGGGCTCTCCTCGTCTATGA Direct Loss 0.947686076417229 0 0.8961743 0.8576143 prediction 0.895372152834458 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431628 chr1:229431628 synonymous SNV . 0 21 hm5C_associated_SNPs_50085 0 0 1 2 229431626 229431649 mRNA hsa-miR-376b RAB4A miRanda miRanda
4717 chr12 57910051 57910051 1 + A C LIHC 57910047 + 57910027 57910067 41 GGCAAAAACGTCCCCGAAGCCAGCAGTTGTAGAGACTGTTA GGCAAAAACGTCCCCGAAGCCAGCCGTTGTAGAGACTGTTA < 41bp 0.85194202423364 0.499664359750093 0.50988615 0.2058866 prediction 0.703884048467281 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57910047 chr12:57910051 synonymous SNV . 0 25 hm5C_associated_SNPs_50124 0 0 1 3 57910048 57910067 mRNA hsa-miR-212 MARS miRanda miRanda
4718 chr12 57910051 57910051 1 + A C LIHC 57910047 + 57910027 57910067 41 GGCAAAAACGTCCCCGAAGCCAGCAGTTGTAGAGACTGTTA GGCAAAAACGTCCCCGAAGCCAGCCGTTGTAGAGACTGTTA < 41bp 0.85194202423364 0.499664359750093 0.50988615 0.2058866 prediction 0.703884048467281 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57910047 chr12:57910051 synonymous SNV . 0 25 hm5C_associated_SNPs_50124 0 0 1 3 57910043 57910067 mRNA hsa-miR-132 MARS miRanda miRanda
4719 chr12 57910051 57910051 1 + A C LIHC 57910047 + 57910027 57910067 41 GGCAAAAACGTCCCCGAAGCCAGCAGTTGTAGAGACTGTTA GGCAAAAACGTCCCCGAAGCCAGCCGTTGTAGAGACTGTTA < 41bp 0.85194202423364 0.499664359750093 0.50988615 0.2058866 prediction 0.703884048467281 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57910047 chr12:57910051 synonymous SNV . 0 25 hm5C_associated_SNPs_50124 0 0 1 3 57910048 57910069 mRNA hsa-miR-194 MARS miRanda miRanda
4720 chr7 128366916 128366916 1 + A C STAD 128366912 + 128366892 128366932 41 AGCAGAAAGGTGGAGACCAACAAGAACAGCTCAGGTAAGGG AGCAGAAAGGTGGAGACCAACAAGCACAGCTCAGGTAAGGG < 41bp 0.849610291080962 0.495502285908978 0.85954285 0.5497476 prediction 0.699220582161923 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128366912 chr7:128366916 nonsynonymous SNV 0.029 0 25 hm5C_associated_SNPs_50156 0 0 0 2 128366909 128366925 mRNA hsa-miR-125b FAM71F1 miRanda miRanda
4721 chr7 128366916 128366916 1 + A C STAD 128366912 + 128366892 128366932 41 AGCAGAAAGGTGGAGACCAACAAGAACAGCTCAGGTAAGGG AGCAGAAAGGTGGAGACCAACAAGCACAGCTCAGGTAAGGG < 41bp 0.849610291080962 0.495502285908978 0.85954285 0.5497476 prediction 0.699220582161923 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128366912 chr7:128366916 nonsynonymous SNV 0.029 0 25 hm5C_associated_SNPs_50156 0 0 0 2 128366906 128366925 mRNA hsa-miR-125a-5p FAM71F1 miRanda miRanda
4722 chr12 3701486 3701486 1 + A C OV 3701482 + 3701462 3701502 41 CGGAGGGGGGAGGAAATCTACGGGACCATATCCATGAAGCC CGGAGGGGGGAGGAAATCTACGGGCCCATATCCATGAAGCC < 41bp 0.857741009327406 0.50914781759371 0.73413944 0.7963081 prediction 0.697186383467391 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3701482 chr12:3701486 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_50173 0 0 0 2 3701472 3701494 mRNA hsa-miR-190 PRMT8 miRanda miRanda
4723 chr12 3701486 3701486 1 + A C OV 3701482 + 3701462 3701502 41 CGGAGGGGGGAGGAAATCTACGGGACCATATCCATGAAGCC CGGAGGGGGGAGGAAATCTACGGGCCCATATCCATGAAGCC < 41bp 0.857741009327406 0.50914781759371 0.73413944 0.7963081 prediction 0.697186383467391 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3701482 chr12:3701486 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_50173 0 0 0 2 3701477 3701499 mRNA hsa-miR-433 PRMT8 miRanda miRanda
4724 chr1 38027737 38027737 1 + A C rs138550216 38027733 + 38027713 38027753 41 TGGAGAGGCAAGTGAACGAGCAGAAGGCAAAATGTGAAGCC TGGAGAGGCAAGTGAACGAGCAGACGGCAAAATGTGAAGCC < 41bp 0.859524595526691 0.511569018880754 0.3664552 0.3379594 prediction 0.695911153291874 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38027733 chr1:38027737 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_50184 0 0 0 2 38027728 38027750 mRNA hsa-miR-23a DNALI1 miRanda miRanda
4725 chr1 38027737 38027737 1 + A C rs138550216 38027733 + 38027713 38027753 41 TGGAGAGGCAAGTGAACGAGCAGAAGGCAAAATGTGAAGCC TGGAGAGGCAAGTGAACGAGCAGACGGCAAAATGTGAAGCC < 41bp 0.859524595526691 0.511569018880754 0.3664552 0.3379594 prediction 0.695911153291874 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38027733 chr1:38027737 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_50184 0 0 0 2 38027728 38027750 mRNA hsa-miR-23b DNALI1 miRanda miRanda
4726 chr3 136701065 136701065 1 + A C STAD 136701061 + 136701041 136701081 41 CAGCAGCTGGTGCTCACTCACTGAAGGTCCTGAGTGTGATG CAGCAGCTGGTGCTCACTCACTGACGGTCCTGAGTGTGATG < 41bp 0.847711529742508 0.471540215892397 0.2933557 0.09994626 prediction 0.695423059485017 Functional Loss - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136701061 chr3:136701065 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_50192 0 0 0 1 136701062 136701088 mRNA hsa-miR-148b IL20RB miRanda miRanda
4727 chr1 156348152 156348152 1 + A C UCEC 156348148 + 156348128 156348168 41 AGCTGGAGAAGAGCAAGCACCGCCAGGGCTCCGTCTACCAT AGCTGGAGAAGAGCAAGCACCGCCCGGGCTCCGTCTACCAT < 41bp 0.879013614305683 0.531650058766396 0.2538256 0.09595212 prediction 0.694727111078574 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156348148 chr1:156348152 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_50208 0 0 1 1 156348147 156348167 mRNA hsa-miR-379 RHBG miRanda miRanda
4728 chr3 100170657 100170657 1 + A C LUSC 100170653 + 100170633 100170673 41 TTCGATGCCGTAGCCACGTACGGGATTACAGAAAATACTCA TTCGATGCCGTAGCCACGTACGGGCTTACAGAAAATACTCA < 41bp 0.853946396937632 0.506830797472665 0.89764977 0.88415265 prediction 0.694231198929934 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100170653 chr3:100170657 nonsynonymous SNV 0.028 0 25 hm5C_associated_SNPs_50215 0 0 0 1 100170654 100170673 mRNA hsa-miR-496 LNP1 miRanda miRanda
4729 chr8 144126093 144126093 1 + G T BRCA 144126090 + 144126070 144126110 41 TGCCCTCTGCCCTGGCACCCCAGGGACTCACTGCCAAAGAC TGCCCTCTGCCCTGGCACCCCAGTGACTCACTGCCAAAGAC < 41bp 0.845496358678071 0.490919120393146 0.8952721 0.3441623 prediction 0.690992717356141 Functional Loss - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144126090 chr8:144126093 stopgain . 0 24 hm5C_associated_SNPs_50258 0 0 0 4 144126085 144126105 mRNA hsa-miR-34a C8orf31 miRanda miRanda
4730 chr8 144126093 144126093 1 + G T BRCA 144126090 + 144126070 144126110 41 TGCCCTCTGCCCTGGCACCCCAGGGACTCACTGCCAAAGAC TGCCCTCTGCCCTGGCACCCCAGTGACTCACTGCCAAAGAC < 41bp 0.845496358678071 0.490919120393146 0.8952721 0.3441623 prediction 0.690992717356141 Functional Loss - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144126090 chr8:144126093 stopgain . 0 24 hm5C_associated_SNPs_50258 0 0 0 4 144126085 144126105 mRNA hsa-miR-34c-5p C8orf31 miRanda miRanda
4731 chr8 144126093 144126093 1 + G T BRCA 144126090 + 144126070 144126110 41 TGCCCTCTGCCCTGGCACCCCAGGGACTCACTGCCAAAGAC TGCCCTCTGCCCTGGCACCCCAGTGACTCACTGCCAAAGAC < 41bp 0.845496358678071 0.490919120393146 0.8952721 0.3441623 prediction 0.690992717356141 Functional Loss - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144126090 chr8:144126093 stopgain . 0 24 hm5C_associated_SNPs_50258 0 0 0 4 144126084 144126105 mRNA hsa-miR-449a C8orf31 miRanda miRanda
4732 chr8 144126093 144126093 1 + G T BRCA 144126090 + 144126070 144126110 41 TGCCCTCTGCCCTGGCACCCCAGGGACTCACTGCCAAAGAC TGCCCTCTGCCCTGGCACCCCAGTGACTCACTGCCAAAGAC < 41bp 0.845496358678071 0.490919120393146 0.8952721 0.3441623 prediction 0.690992717356141 Functional Loss - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144126090 chr8:144126093 stopgain . 0 24 hm5C_associated_SNPs_50258 0 0 0 4 144126084 144126105 mRNA hsa-miR-449b C8orf31 miRanda miRanda
4733 chr1 150468986 150468986 1 + G T PRAD 150468983 + 150468963 150469003 41 ATCATCCTTATGGAGGTCTTCAGGGGCCCCAGAGACACTGC ATCATCCTTATGGAGGTCTTCAGTGGCCCCAGAGACACTGC < 41bp 0.858143848790167 0.513558860257211 0.94686997 0.39376116 prediction 0.689169977065912 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150468983 chr1:150468986 nonsynonymous SNV 0.114 0 24 hm5C_associated_SNPs_50285 0 0 0 2 150468975 150468997 mRNA hsa-miR-330-5p TARS2 miRanda miRanda
4734 chr1 150468986 150468986 1 + G T PRAD 150468983 + 150468963 150469003 41 ATCATCCTTATGGAGGTCTTCAGGGGCCCCAGAGACACTGC ATCATCCTTATGGAGGTCTTCAGTGGCCCCAGAGACACTGC < 41bp 0.858143848790167 0.513558860257211 0.94686997 0.39376116 prediction 0.689169977065912 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150468983 chr1:150468986 nonsynonymous SNV 0.114 0 24 hm5C_associated_SNPs_50285 0 0 0 2 150468977 150468997 mRNA hsa-miR-326 TARS2 miRanda miRanda
4735 chr1 46878853 46878853 1 + G T LUSC 46878850 + 46878830 46878870 41 GAGGCCCAGATGGAACATTACAGGGGCTACTTTGGGGATAT GAGGCCCAGATGGAACATTACAGTGGCTACTTTGGGGATAT < 41bp 0.844595676950568 0.501411361024651 0.9040402 0.38840646 prediction 0.686368631851834 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46878850 chr1:46878853 nonsynonymous SNV 0.584 1 24 hm5C_associated_SNPs_50337 0 0 0 1 46878843 46878863 mRNA hsa-miR-519d FAAH miRanda miRanda
4736 chr1 26507299 26507299 1 + G T UCEC 26507296 + 26507276 26507316 41 AGAGCATAGTCCAAGGCTGCCTGGGGGACTGTGCCAAGACC AGAGCATAGTCCAAGGCTGCCTGTGGGACTGTGCCAAGACC < 41bp 0.842316545243843 0.488809486061231 0.33480573 0.017260045 prediction 0.684633090487687 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26507296 chr1:26507299 nonsynonymous SNV 0.022 3 24 hm5C_associated_SNPs_50369 0 0 0 2 26507292 26507313 mRNA hsa-miR-96 CNKSR1 miRanda miRanda
4737 chr1 26507299 26507299 1 + G T UCEC 26507296 + 26507276 26507316 41 AGAGCATAGTCCAAGGCTGCCTGGGGGACTGTGCCAAGACC AGAGCATAGTCCAAGGCTGCCTGTGGGACTGTGCCAAGACC < 41bp 0.842316545243843 0.488809486061231 0.33480573 0.017260045 prediction 0.684633090487687 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26507296 chr1:26507299 nonsynonymous SNV 0.022 3 24 hm5C_associated_SNPs_50369 0 0 0 2 26507289 26507313 mRNA hsa-miR-1271 CNKSR1 miRanda miRanda
4738 chr11 66373040 66373040 1 + G T UCEC 66373037 + 66373017 66373057 41 CGGGGAGGCCATCCCTTATCCAAGATCACAGGGAACTCCGG CGGGGAGGCCATCCCTTATCCAATATCACAGGGAACTCCGG < 41bp 0.854707652043468 0.512508028447487 0.811249 0.22212332 prediction 0.684399247191963 Functional Loss - CCS ENSG00000173992 CDS Human protein_coding chr11:66373037 chr11:66373040 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50371 0 0 1 1 66373034 66373057 mRNA hsa-miR-127-3p CCS miRanda miRanda
4739 chr1 149760153 149760153 1 + G T UCEC 149760150 + 149760130 149760170 41 AAAGCATCGCTACACATCAGCAGGAATATCTGTCACTGTGA AAAGCATCGCTACACATCAGCAGTAATATCTGTCACTGTGA < 41bp 0.841330910846541 0.489449595785195 0.9035177 0.28227693 prediction 0.682661821693082 Functional Loss - FCGR1A ENSG00000150337 CDS Human protein_coding chr1:149760150 chr1:149760153 nonsynonymous SNV 0.464 0 24 hm5C_associated_SNPs_50407 0 0 0 5 149760150 149760171 mRNA hsa-miR-27a FCGR1A miRanda miRanda
4740 chr1 149760153 149760153 1 + G T UCEC 149760150 + 149760130 149760170 41 AAAGCATCGCTACACATCAGCAGGAATATCTGTCACTGTGA AAAGCATCGCTACACATCAGCAGTAATATCTGTCACTGTGA < 41bp 0.841330910846541 0.489449595785195 0.9035177 0.28227693 prediction 0.682661821693082 Functional Loss - FCGR1A ENSG00000150337 CDS Human protein_coding chr1:149760150 chr1:149760153 nonsynonymous SNV 0.464 0 24 hm5C_associated_SNPs_50407 0 0 0 5 149760150 149760171 mRNA hsa-miR-27b FCGR1A miRanda miRanda
4741 chr1 149760153 149760153 1 + G T UCEC 149760150 + 149760130 149760170 41 AAAGCATCGCTACACATCAGCAGGAATATCTGTCACTGTGA AAAGCATCGCTACACATCAGCAGTAATATCTGTCACTGTGA < 41bp 0.841330910846541 0.489449595785195 0.9035177 0.28227693 prediction 0.682661821693082 Functional Loss - FCGR1A ENSG00000150337 CDS Human protein_coding chr1:149760150 chr1:149760153 nonsynonymous SNV 0.464 0 24 hm5C_associated_SNPs_50407 0 0 0 5 149760151 149760170 mRNA hsa-miR-128 FCGR1A miRanda miRanda
4742 chr1 149760153 149760153 1 + G T UCEC 149760150 + 149760130 149760170 41 AAAGCATCGCTACACATCAGCAGGAATATCTGTCACTGTGA AAAGCATCGCTACACATCAGCAGTAATATCTGTCACTGTGA < 41bp 0.841330910846541 0.489449595785195 0.9035177 0.28227693 prediction 0.682661821693082 Functional Loss - FCGR1A ENSG00000150337 CDS Human protein_coding chr1:149760150 chr1:149760153 nonsynonymous SNV 0.464 0 24 hm5C_associated_SNPs_50407 0 0 0 5 149760133 149760154 mRNA hsa-miR-370 FCGR1A miRanda miRanda
4743 chr1 149760153 149760153 1 + G T UCEC 149760150 + 149760130 149760170 41 AAAGCATCGCTACACATCAGCAGGAATATCTGTCACTGTGA AAAGCATCGCTACACATCAGCAGTAATATCTGTCACTGTGA < 41bp 0.841330910846541 0.489449595785195 0.9035177 0.28227693 prediction 0.682661821693082 Functional Loss - FCGR1A ENSG00000150337 CDS Human protein_coding chr1:149760150 chr1:149760153 nonsynonymous SNV 0.464 0 24 hm5C_associated_SNPs_50407 0 0 0 5 149760147 149760166 mRNA hsa-miR-542-3p FCGR1A miRanda miRanda
4744 chr11 65617686 65617686 1 + G T CESC 65617683 + 65617663 65617703 41 GAAAAGCTACAGAAATTGGGCGAGGGGGACAGCTCTGTCAC GAAAAGCTACAGAAATTGGGCGATGGGGACAGCTCTGTCAC < 41bp 0.860323759861504 0.519317163442581 0.90687406 0.5528414 prediction 0.682013192837846 Functional Loss - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65617683 chr11:65617686 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_50429 0 0 0 1 65617682 65617704 mRNA hsa-miR-542-3p SNX32 miRanda miRanda
4745 chr7 141351333 141351333 1 + A C COAD 141351329 + 141351309 141351349 41 TTTCCTGTGCTCACAGAAGTCGAAAGGTGAGAAACCCCAAG TTTCCTGTGCTCACAGAAGTCGAACGGTGAGAAACCCCAAG < 41bp 0.839827780519763 0.483236596758131 0.3091503 0.21058488 prediction 0.679655561039525 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141351329 chr7:141351333 nonsynonymous SNV 0.863 2 25 hm5C_associated_SNPs_50511 0 0 1 1 141351325 141351339 mRNA hsa-miR-204 AGK miRanda miRanda
4746 chr8 66989019 66989019 1 + A C HNSC 66989015 + 66988995 66989035 41 ATTTCAAAGAGAAGCATATACGACAAGTACGGATCGCTGGG ATTTCAAAGAGAAGCATATACGACCAGTACGGATCGCTGGG < 41bp 0.879040722902533 0.541189946880269 0.21893823 0.23860833 prediction 0.675701552044528 Functional Loss - DNAJC5B ENSG00000147570 CDS Human protein_coding chr8:66989015 chr8:66989019 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_50625 0 0 0 1 66989012 66989035 mRNA hsa-miR-338-3p DNAJC5B miRanda miRanda
4747 chr1 148933317 148933317 1 + G T UCEC 148933314 + 148933294 148933334 41 ATTGTGGCTGGAGACATGAGCAAGAAAAGCCTCTGGGAGCA ATTGTGGCTGGAGACATGAGCAATAAAAGCCTCTGGGAGCA < 41bp 0.839955950156259 0.502888829899768 0.8550311 0.43084428 prediction 0.674134240512981 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148933314 chr1:148933317 . . 0 24 hm5C_associated_SNPs_50672 0 0 0 2 148933312 148933333 mRNA hsa-miR-150 LOC645166 miRanda miRanda
4748 chr1 148933317 148933317 1 + G T UCEC 148933314 + 148933294 148933334 41 ATTGTGGCTGGAGACATGAGCAAGAAAAGCCTCTGGGAGCA ATTGTGGCTGGAGACATGAGCAATAAAAGCCTCTGGGAGCA < 41bp 0.839955950156259 0.502888829899768 0.8550311 0.43084428 prediction 0.674134240512981 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148933314 chr1:148933317 . . 0 24 hm5C_associated_SNPs_50672 0 0 0 2 148933298 148933320 mRNA hsa-miR-431 LOC645166 miRanda miRanda
4749 chr1 171254520 171254520 1 + G T SARC 171254517 + 171254497 171254537 41 CCAGTTCCGCTTGACTGGCCCAGGAAAATGGGAAGGAGCCA CCAGTTCCGCTTGACTGGCCCAGTAAAATGGGAAGGAGCCA < 41bp 0.858116739094845 0.52346470669139 0.538089 0.18679035 prediction 0.66930406480691 Functional Loss - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171254517 chr1:171254520 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_50824 0 0 0 1 171254517 171254539 mRNA hsa-miR-149 FMO1 miRanda miRanda
4750 chr12 3649914 3649914 1 + G T UCEC 3649911 + 3649891 3649931 41 GAACCCAGAGGAGATGACCTCGAGAGATTATTACTTCGACT GAACCCAGAGGAGATGACCTCGATAGATTATTACTTCGACT < 41bp 0.834607430413184 0.485497709347507 0.9114224 0.26781586 prediction 0.669214860826368 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3649911 chr12:3649914 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50826 0 0 0 1 3649898 3649920 mRNA hsa-miR-216b PRMT8 miRanda miRanda
4751 chr12 66717817 66717817 1 + G T BRCA 66717814 + 66717794 66717834 41 GGTGATAAAATTTGTTGTACCAGGAATGCATACCTCTCAGA GGTGATAAAATTTGTTGTACCAGTAATGCATACCTCTCAGA < 41bp 0.845033498739883 0.510590826319805 0.7744176 0.09256759 prediction 0.668885344840155 Functional Loss - HELB ENSG00000127311 CDS Human protein_coding chr12:66717814 chr12:66717817 nonsynonymous SNV 0.961 1 24 hm5C_associated_SNPs_50837 0 0 1 2 66717806 66717830 mRNA hsa-let-7g HELB miRanda miRanda
4752 chr12 66717817 66717817 1 + G T BRCA 66717814 + 66717794 66717834 41 GGTGATAAAATTTGTTGTACCAGGAATGCATACCTCTCAGA GGTGATAAAATTTGTTGTACCAGTAATGCATACCTCTCAGA < 41bp 0.845033498739883 0.510590826319805 0.7744176 0.09256759 prediction 0.668885344840155 Functional Loss - HELB ENSG00000127311 CDS Human protein_coding chr12:66717814 chr12:66717817 nonsynonymous SNV 0.961 1 24 hm5C_associated_SNPs_50837 0 0 1 2 66717814 66717830 mRNA hsa-miR-202 HELB miRanda miRanda
4753 chr16 71417928 71417928 1 + G T COAD 71417925 + 71417905 71417945 41 ATTGGGCCTCTCAGAGATGTCCCGGTAAGCACCTCACCCCC ATTGGGCCTCTCAGAGATGTCCCTGTAAGCACCTCACCCCC < 41bp 0.834340699113035 0.472464291698804 0.49496835 0.16594899 prediction 0.66868139822607 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71417925 chr16:71417928 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_50848 0 0 0 1 71417926 71417928 mRNA hsa-let-7i CALB2 miRanda miRanda
4754 chr20 32332916 32332916 1 + G T rs577699019 32332913 + 32332893 32332933 41 GCGGGTATGACCCCAGATGACGAGGATGTATTTCTCTGCGG GCGGGTATGACCCCAGATGACGATGATGTATTTCTCTGCGG < 41bp 0.833051904054452 0.47247242290416 0.8648776 0.22195628 prediction 0.666103808108904 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32332913 chr20:32332916 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_50925 0 0 0 1 32332909 32332929 mRNA hsa-miR-539 ZNF341 miRanda miRanda
4755 chr11 70171109 70171109 1 + G T SKCM 70171106 + 70171086 70171126 41 TATTTGAACACCACAAAGCTCTGGATGAAAAGGTGCCATCA TATTTGAACACCACAAAGCTCTGTATGAAAAGGTGCCATCA < 41bp 0.834123737516382 0.501144488785649 0.87644273 0.33570552 prediction 0.665958497461467 Functional Loss - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70171106 chr11:70171109 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_50930 0 0 1 2 70171101 70171117 mRNA hsa-miR-204 PPFIA1 miRanda miRanda
4756 chr11 70171109 70171109 1 + G T SKCM 70171106 + 70171086 70171126 41 TATTTGAACACCACAAAGCTCTGGATGAAAAGGTGCCATCA TATTTGAACACCACAAAGCTCTGTATGAAAAGGTGCCATCA < 41bp 0.834123737516382 0.501144488785649 0.87644273 0.33570552 prediction 0.665958497461467 Functional Loss - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70171106 chr11:70171109 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_50930 0 0 1 2 70171101 70171117 mRNA hsa-miR-211 PPFIA1 miRanda miRanda
4757 chr7 128588141 128588141 1 + G T UCEC 128588138 + 128588118 128588158 41 AACCCCATCCAGCGGGAGGTCAAGACCAAGCTTTTCAGCCT AACCCCATCCAGCGGGAGGTCAATACCAAGCTTTTCAGCCT < 41bp 0.838412575406187 0.505465727475652 0.6719345 0.09457955 prediction 0.665893695861071 Functional Loss - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128588138 chr7:128588141 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_50932 0 0 0 1 128588138 128588160 mRNA hsa-miR-125a-3p IRF5 miRanda miRanda
4758 chr2 71303782 71303782 1 + G T SARC 71303779 + 71303759 71303799 41 CCGCTATATCTTCAGGAAGGCTGGGGAGATGCTGGGCAGAC CCGCTATATCTTCAGGAAGGCTGTGGAGATGCTGGGCAGAC < 41bp 0.832264307831012 0.471340252343288 0.7915168 0.2020947 prediction 0.664528615662025 Functional Loss - NAGK ENSG00000124357 CDS Human protein_coding chr2:71303779 chr2:71303782 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_50989 0 0 1 1 71303774 71303800 mRNA hsa-miR-346 NAGK miRanda miRanda
4759 chr2 46808686 46808686 1 - C A COAD 46808689 - 46808669 46808709 41 CTTGGAGCGACCTTTGGCTACGTGGCTGGCCTTGTTATTTC CTTGGAGCGACCTTTGGCTACGTTGCTGGCCTTGTTATTTC < 41bp 0.843311229619207 0.512662360849134 0.108520985 0.036361575 prediction 0.661297737540146 Functional Loss - PIGF ENSG00000151665 CDS Human protein_coding chr2:46808689 chr2:46808686 synonymous SNV . 0 24 hm5C_associated_SNPs_51098 0 0 1 1 46808671 46808693 mRNA hsa-miR-300 PIGF miRanda miRanda
4760 chr17 29325738 29325738 1 + G T UCEC 29325735 + 29325715 29325755 41 TCCTGCAGCCTGGAGGTGTCCAAGGATTCCCGTACAGTGAC TCCTGCAGCCTGGAGGTGTCCAATGATTCCCGTACAGTGAC < 41bp 0.85571435936613 0.525451744379571 0.6882363 0.15394303 prediction 0.660525229973119 Functional Loss - RNF135 ENSG00000181481 CDS Human protein_coding chr17:29325735 chr17:29325738 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51126 0 0 0 1 29325738 29325759 mRNA hsa-miR-101 RNF135 miRanda miRanda
4761 chr9 15458012 15458012 1 + G T UCEC 15458009 + 15457989 15458029 41 ACATTGTATCCCCTCCTTATCAAGAAGCATTGGCTATGGAC ACATTGTATCCCCTCCTTATCAATAAGCATTGGCTATGGAC < 41bp 0.829040211352965 0.486958432391135 0.91657853 0.07789469 prediction 0.658080422705929 Functional Loss - SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15458009 chr9:15458012 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51213 0 0 1 2 15458012 15458033 mRNA hsa-miR-133a SNAPC3 miRanda miRanda
4762 chr9 15458012 15458012 1 + G T UCEC 15458009 + 15457989 15458029 41 ACATTGTATCCCCTCCTTATCAAGAAGCATTGGCTATGGAC ACATTGTATCCCCTCCTTATCAATAAGCATTGGCTATGGAC < 41bp 0.829040211352965 0.486958432391135 0.91657853 0.07789469 prediction 0.658080422705929 Functional Loss - SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15458009 chr9:15458012 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51213 0 0 1 2 15458012 15458033 mRNA hsa-miR-133b SNAPC3 miRanda miRanda
4763 chrX 149905241 149905241 1 + G T UCEC 149905238 + 149905218 149905258 41 ATGTGGATGGGACGCATTGGCTGGAATATATAAGGGTAAAG ATGTGGATGGGACGCATTGGCTGTAATATATAAGGGTAAAG < 41bp 0.844132335204822 0.51530337715246 0.2718558 0.06448099 prediction 0.657657916104724 Functional Loss - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905238 chrX:149905241 stopgain 0.997 1 24 hm5C_associated_SNPs_51233 0 0 1 8 149905239 149905252 mRNA hsa-miR-15a MTMR1 miRanda miRanda
4764 chrX 149905241 149905241 1 + G T UCEC 149905238 + 149905218 149905258 41 ATGTGGATGGGACGCATTGGCTGGAATATATAAGGGTAAAG ATGTGGATGGGACGCATTGGCTGTAATATATAAGGGTAAAG < 41bp 0.844132335204822 0.51530337715246 0.2718558 0.06448099 prediction 0.657657916104724 Functional Loss - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905238 chrX:149905241 stopgain 0.997 1 24 hm5C_associated_SNPs_51233 0 0 1 8 149905238 149905252 mRNA hsa-miR-16 MTMR1 miRanda miRanda
4765 chrX 149905241 149905241 1 + G T UCEC 149905238 + 149905218 149905258 41 ATGTGGATGGGACGCATTGGCTGGAATATATAAGGGTAAAG ATGTGGATGGGACGCATTGGCTGTAATATATAAGGGTAAAG < 41bp 0.844132335204822 0.51530337715246 0.2718558 0.06448099 prediction 0.657657916104724 Functional Loss - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905238 chrX:149905241 stopgain 0.997 1 24 hm5C_associated_SNPs_51233 0 0 1 8 149905238 149905252 mRNA hsa-miR-103 MTMR1 miRanda miRanda
4766 chrX 149905241 149905241 1 + G T UCEC 149905238 + 149905218 149905258 41 ATGTGGATGGGACGCATTGGCTGGAATATATAAGGGTAAAG ATGTGGATGGGACGCATTGGCTGTAATATATAAGGGTAAAG < 41bp 0.844132335204822 0.51530337715246 0.2718558 0.06448099 prediction 0.657657916104724 Functional Loss - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905238 chrX:149905241 stopgain 0.997 1 24 hm5C_associated_SNPs_51233 0 0 1 8 149905238 149905252 mRNA hsa-miR-107 MTMR1 miRanda miRanda
4767 chrX 149905241 149905241 1 + G T UCEC 149905238 + 149905218 149905258 41 ATGTGGATGGGACGCATTGGCTGGAATATATAAGGGTAAAG ATGTGGATGGGACGCATTGGCTGTAATATATAAGGGTAAAG < 41bp 0.844132335204822 0.51530337715246 0.2718558 0.06448099 prediction 0.657657916104724 Functional Loss - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905238 chrX:149905241 stopgain 0.997 1 24 hm5C_associated_SNPs_51233 0 0 1 8 149905239 149905252 mRNA hsa-miR-15b MTMR1 miRanda miRanda
4768 chrX 149905241 149905241 1 + G T UCEC 149905238 + 149905218 149905258 41 ATGTGGATGGGACGCATTGGCTGGAATATATAAGGGTAAAG ATGTGGATGGGACGCATTGGCTGTAATATATAAGGGTAAAG < 41bp 0.844132335204822 0.51530337715246 0.2718558 0.06448099 prediction 0.657657916104724 Functional Loss - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905238 chrX:149905241 stopgain 0.997 1 24 hm5C_associated_SNPs_51233 0 0 1 8 149905239 149905252 mRNA hsa-miR-195 MTMR1 miRanda miRanda
4769 chrX 149905241 149905241 1 + G T UCEC 149905238 + 149905218 149905258 41 ATGTGGATGGGACGCATTGGCTGGAATATATAAGGGTAAAG ATGTGGATGGGACGCATTGGCTGTAATATATAAGGGTAAAG < 41bp 0.844132335204822 0.51530337715246 0.2718558 0.06448099 prediction 0.657657916104724 Functional Loss - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905238 chrX:149905241 stopgain 0.997 1 24 hm5C_associated_SNPs_51233 0 0 1 8 149905239 149905252 mRNA hsa-miR-424 MTMR1 miRanda miRanda
4770 chrX 149905241 149905241 1 + G T UCEC 149905238 + 149905218 149905258 41 ATGTGGATGGGACGCATTGGCTGGAATATATAAGGGTAAAG ATGTGGATGGGACGCATTGGCTGTAATATATAAGGGTAAAG < 41bp 0.844132335204822 0.51530337715246 0.2718558 0.06448099 prediction 0.657657916104724 Functional Loss - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905238 chrX:149905241 stopgain 0.997 1 24 hm5C_associated_SNPs_51233 0 0 1 8 149905240 149905252 mRNA hsa-miR-497 MTMR1 miRanda miRanda
4771 chr1 198668756 198668756 1 + G T UCEC 198668753 + 198668733 198668773 41 AGACTCGCAGACGCCCTCTGCTGGAACTGACACGCAGACAT AGACTCGCAGACGCCCTCTGCTGTAACTGACACGCAGACAT < 41bp 0.836890703318163 0.50885534937146 0.78209895 0.31143203 prediction 0.656070707893406 Functional Loss - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198668753 chr1:198668756 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_51307 0 0 0 1 198668742 198668764 mRNA hsa-miR-223 PTPRC miRanda miRanda
4772 chr7 143027921 143027921 1 + A C UCEC 143027917 + 143027897 143027937 41 TACTTTGCTGTTCGGAACTACTGGAGAGGATTCTTTGCAGC TACTTTGCTGTTCGGAACTACTGGCGAGGATTCTTTGCAGC < 41bp 0.828024942464599 0.442186539264766 0.46714407 0.2302599 prediction 0.656049884929198 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143027917 chr7:143027921 synonymous SNV . 0 25 hm5C_associated_SNPs_51308 0 0 0 3 143027898 143027921 mRNA hsa-miR-199a-5p CLCN1 miRanda miRanda
4773 chr7 143027921 143027921 1 + A C UCEC 143027917 + 143027897 143027937 41 TACTTTGCTGTTCGGAACTACTGGAGAGGATTCTTTGCAGC TACTTTGCTGTTCGGAACTACTGGCGAGGATTCTTTGCAGC < 41bp 0.828024942464599 0.442186539264766 0.46714407 0.2302599 prediction 0.656049884929198 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143027917 chr7:143027921 synonymous SNV . 0 25 hm5C_associated_SNPs_51308 0 0 0 3 143027898 143027921 mRNA hsa-miR-199b-5p CLCN1 miRanda miRanda
4774 chr7 143027921 143027921 1 + A C UCEC 143027917 + 143027897 143027937 41 TACTTTGCTGTTCGGAACTACTGGAGAGGATTCTTTGCAGC TACTTTGCTGTTCGGAACTACTGGCGAGGATTCTTTGCAGC < 41bp 0.828024942464599 0.442186539264766 0.46714407 0.2302599 prediction 0.656049884929198 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143027917 chr7:143027921 synonymous SNV . 0 25 hm5C_associated_SNPs_51308 0 0 0 3 143027911 143027933 mRNA hsa-miR-186 CLCN1 miRanda miRanda
4775 chr2 162696351 162696351 1 + G T UCEC 162696348 + 162696328 162696368 41 CTTGGAACCGAGGATGATGACGAGGAACACATTCCTCATGA CTTGGAACCGAGGATGATGACGATGAACACATTCCTCATGA < 41bp 0.826851071532393 0.49104917782862 0.68698156 0.06981209 prediction 0.653702143064786 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162696348 chr2:162696351 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_51399 0 0 0 3 162696342 162696363 mRNA hsa-miR-1 SLC4A10 miRanda miRanda
4776 chr2 162696351 162696351 1 + G T UCEC 162696348 + 162696328 162696368 41 CTTGGAACCGAGGATGATGACGAGGAACACATTCCTCATGA CTTGGAACCGAGGATGATGACGATGAACACATTCCTCATGA < 41bp 0.826851071532393 0.49104917782862 0.68698156 0.06981209 prediction 0.653702143064786 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162696348 chr2:162696351 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_51399 0 0 0 3 162696342 162696363 mRNA hsa-miR-206 SLC4A10 miRanda miRanda
4777 chr2 162696351 162696351 1 + G T UCEC 162696348 + 162696328 162696368 41 CTTGGAACCGAGGATGATGACGAGGAACACATTCCTCATGA CTTGGAACCGAGGATGATGACGATGAACACATTCCTCATGA < 41bp 0.826851071532393 0.49104917782862 0.68698156 0.06981209 prediction 0.653702143064786 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162696348 chr2:162696351 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_51399 0 0 0 3 162696343 162696363 mRNA hsa-miR-613 SLC4A10 miRanda miRanda
4778 chr10 50901872 50901872 1 + G T GBM 50901869 + 50901849 50901889 41 ATCCTAGAGAAGATAGAAGACTGGAATGTGGTGGAACTCAT ATCCTAGAGAAGATAGAAGACTGTAATGTGGTGGAACTCAT < 41bp 0.843164262100816 0.516636293694056 0.36871657 0.29535395 prediction 0.653055936813519 Functional Loss - C10orf53 ENSG00000178645 CDS Human protein_coding chr10:50901869 chr10:50901872 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_51423 0 0 0 2 50901862 50901883 mRNA hsa-miR-197 CHAT miRanda miRanda
4779 chr10 50901872 50901872 1 + G T GBM 50901869 + 50901849 50901889 41 ATCCTAGAGAAGATAGAAGACTGGAATGTGGTGGAACTCAT ATCCTAGAGAAGATAGAAGACTGTAATGTGGTGGAACTCAT < 41bp 0.843164262100816 0.516636293694056 0.36871657 0.29535395 prediction 0.653055936813519 Functional Loss - C10orf53 ENSG00000178645 CDS Human protein_coding chr10:50901869 chr10:50901872 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_51423 0 0 0 2 50901852 50901874 mRNA hsa-miR-145 CHAT miRanda miRanda
4780 chr12 124104031 124104031 1 + G T UCEC 124104028 + 124104008 124104048 41 TTTGCCCTGCTGAGGATGCCCAAGATGCCAGAATTGAGAGG TTTGCCCTGCTGAGGATGCCCAATATGCCAGAATTGAGAGG < 41bp 0.826278194764092 0.472834689010732 0.38716197 0.18628907 prediction 0.652556389528185 Functional Loss - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124104028 chr12:124104031 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51449 0 0 1 1 124104021 124104041 mRNA hsa-miR-544 DDX55 miRanda miRanda
4781 chr3 49021773 49021773 1 + A C rs143241623 49021769 + 49021749 49021789 41 TGGCATGGGGGCTGTGTTTGCACAAGTTATTTTCATGTTAC TGGCATGGGGGCTGTGTTTGCACACGTTATTTTCATGTTAC < 41bp 0.83259578117262 0.506489176307636 0.12402129 0.21731687 prediction 0.652213209729969 Functional Loss - ARIH2 ENSG00000177479 UTR3 Human protein_coding chr3:49021769 chr3:49021773 . . 0 25 hm5C_associated_SNPs_51468 0 0 1 3 49021750 49021774 mRNA hsa-miR-182 ARIH2 miRanda miRanda
4782 chr3 49021773 49021773 1 + A C rs143241623 49021769 + 49021749 49021789 41 TGGCATGGGGGCTGTGTTTGCACAAGTTATTTTCATGTTAC TGGCATGGGGGCTGTGTTTGCACACGTTATTTTCATGTTAC < 41bp 0.83259578117262 0.506489176307636 0.12402129 0.21731687 prediction 0.652213209729969 Functional Loss - ARIH2 ENSG00000177479 UTR3 Human protein_coding chr3:49021769 chr3:49021773 . . 0 25 hm5C_associated_SNPs_51468 0 0 1 3 49021767 49021790 mRNA hsa-miR-194 ARIH2 miRanda miRanda
4783 chr3 49021773 49021773 1 + A C rs143241623 49021769 + 49021749 49021789 41 TGGCATGGGGGCTGTGTTTGCACAAGTTATTTTCATGTTAC TGGCATGGGGGCTGTGTTTGCACACGTTATTTTCATGTTAC < 41bp 0.83259578117262 0.506489176307636 0.12402129 0.21731687 prediction 0.652213209729969 Functional Loss - ARIH2 ENSG00000177479 UTR3 Human protein_coding chr3:49021769 chr3:49021773 . . 0 25 hm5C_associated_SNPs_51468 0 0 1 3 49021772 49021793 mRNA hsa-miR-873 ARIH2 miRanda miRanda
4784 chr3 186505598 186505598 1 + G T UCEC 186505595 + 186505575 186505615 41 ATGCCATTGTGTTTCAGGCTCGCGGGATTGATGTGCAACAA ATGCCATTGTGTTTCAGGCTCGCTGGATTGATGTGCAACAA < 41bp 0.836954568721447 0.511713844371144 0.51355577 0.09392592 prediction 0.650481448700607 Functional Loss - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186505595 chr3:186505598 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51542 0 0 1 4 186505591 186505614 mRNA hsa-miR-25 EIF4A2 miRanda miRanda
4785 chr3 186505598 186505598 1 + G T UCEC 186505595 + 186505575 186505615 41 ATGCCATTGTGTTTCAGGCTCGCGGGATTGATGTGCAACAA ATGCCATTGTGTTTCAGGCTCGCTGGATTGATGTGCAACAA < 41bp 0.836954568721447 0.511713844371144 0.51355577 0.09392592 prediction 0.650481448700607 Functional Loss - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186505595 chr3:186505598 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51542 0 0 1 4 186505593 186505614 mRNA hsa-miR-32 EIF4A2 miRanda miRanda
4786 chr3 186505598 186505598 1 + G T UCEC 186505595 + 186505575 186505615 41 ATGCCATTGTGTTTCAGGCTCGCGGGATTGATGTGCAACAA ATGCCATTGTGTTTCAGGCTCGCTGGATTGATGTGCAACAA < 41bp 0.836954568721447 0.511713844371144 0.51355577 0.09392592 prediction 0.650481448700607 Functional Loss - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186505595 chr3:186505598 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51542 0 0 1 4 186505596 186505614 mRNA hsa-miR-363 EIF4A2 miRanda miRanda
4787 chr3 186505598 186505598 1 + G T UCEC 186505595 + 186505575 186505615 41 ATGCCATTGTGTTTCAGGCTCGCGGGATTGATGTGCAACAA ATGCCATTGTGTTTCAGGCTCGCTGGATTGATGTGCAACAA < 41bp 0.836954568721447 0.511713844371144 0.51355577 0.09392592 prediction 0.650481448700607 Functional Loss - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186505595 chr3:186505598 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51542 0 0 1 4 186505593 186505614 mRNA hsa-miR-367 EIF4A2 miRanda miRanda
4788 chr2 69045122 69045122 1 + G T LUAD 69045119 + 69045099 69045139 41 GTCGAAGACCCTGCCGTGATCATGAGAGGTATGGCTGGTCC GTCGAAGACCCTGCCGTGATCATTAGAGGTATGGCTGGTCC < 41bp 0.824538073883637 0.463380847113797 0.57610154 0.10942221 prediction 0.649076147767275 Functional Loss - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69045119 chr2:69045122 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51601 0 0 0 1 69045097 69045124 mRNA hsa-miR-433 ARHGAP25 miRanda miRanda
4789 chr4 15565120 15565120 1 + A C rs148194457 15565116 + 15565096 15565136 41 GTGAACATTGTGCGAGCTTACGACATTCCAGTGAGGAAGCC GTGAACATTGTGCGAGCTTACGACCTTCCAGTGAGGAAGCC < 41bp 0.82447791564607 0.44681598321059 0.1606321 0.11775184 prediction 0.64895583129214 Functional Loss - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15565116 chr4:15565120 nonsynonymous SNV 0.098 2 25 hm5C_associated_SNPs_51606 0 0 0 3 15565105 15565125 mRNA hsa-miR-1 CC2D2A miRanda miRanda
4790 chr4 15565120 15565120 1 + A C rs148194457 15565116 + 15565096 15565136 41 GTGAACATTGTGCGAGCTTACGACATTCCAGTGAGGAAGCC GTGAACATTGTGCGAGCTTACGACCTTCCAGTGAGGAAGCC < 41bp 0.82447791564607 0.44681598321059 0.1606321 0.11775184 prediction 0.64895583129214 Functional Loss - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15565116 chr4:15565120 nonsynonymous SNV 0.098 2 25 hm5C_associated_SNPs_51606 0 0 0 3 15565105 15565125 mRNA hsa-miR-206 CC2D2A miRanda miRanda
4791 chr4 15565120 15565120 1 + A C rs148194457 15565116 + 15565096 15565136 41 GTGAACATTGTGCGAGCTTACGACATTCCAGTGAGGAAGCC GTGAACATTGTGCGAGCTTACGACCTTCCAGTGAGGAAGCC < 41bp 0.82447791564607 0.44681598321059 0.1606321 0.11775184 prediction 0.64895583129214 Functional Loss - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15565116 chr4:15565120 nonsynonymous SNV 0.098 2 25 hm5C_associated_SNPs_51606 0 0 0 3 15565106 15565125 mRNA hsa-miR-613 CC2D2A miRanda miRanda
4792 chr19 36205821 36205821 1 + G T COAD 36205819 + 36205799 36205839 41 AGGCCCCTTCAGGAGGCGGCCAGGGCCTTGGGAGTGCAGTC AGGCCCCTTCAGGAGGCGGCCATGGCCTTGGGAGTGCAGTC < 41bp 0.823742798968131 0.481978623470728 0.9002234 0.82887834 prediction 0.647485597936262 Functional Loss - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205819 chr19:36205821 nonsynonymous SNV 0.513 2 23 hm5C_associated_SNPs_51671 0 0 0 1 36205815 36205836 mRNA hsa-miR-324-5p ZBTB32 miRanda miRanda
4793 chr11 65714468 65714468 1 + G T rs143114305 65714465 + 65714445 65714485 41 GGGGCCAGAGCAAGAAAGGACAGGGCTCTGAAGAGTCTGAA GGGGCCAGAGCAAGAAAGGACAGTGCTCTGAAGAGTCTGAA < 41bp 0.823167755743429 0.462885199275826 0.40411723 0.20520604 prediction 0.646335511486858 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65714465 chr11:65714468 unknown 0.189 2 24 hm5C_associated_SNPs_51737 0 0 0 1 65714448 65714470 mRNA hsa-miR-339-5p TSGA10IP miRanda miRanda
4794 chr7 6063007 6063007 1 - C A SKCM 6063010 - 6062990 6063030 41 TTCTGGCCAAACAGAGAGAACAAGAAACGTGCAATGTTCCC TTCTGGCCAAACAGAGAGAACAATAAACGTGCAATGTTCCC < 41bp 0.828465412962036 0.505322866874796 0.3283649 0.507849 prediction 0.646285092174479 Functional Loss - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6063010 chr7:6063007 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51738 0 0 0 6 6062995 6063016 mRNA hsa-miR-25 EIF2AK1 miRanda miRanda
4795 chr7 6063007 6063007 1 - C A SKCM 6063010 - 6062990 6063030 41 TTCTGGCCAAACAGAGAGAACAAGAAACGTGCAATGTTCCC TTCTGGCCAAACAGAGAGAACAATAAACGTGCAATGTTCCC < 41bp 0.828465412962036 0.505322866874796 0.3283649 0.507849 prediction 0.646285092174479 Functional Loss - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6063010 chr7:6063007 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51738 0 0 0 6 6062995 6063015 mRNA hsa-miR-32 EIF2AK1 miRanda miRanda
4796 chr7 6063007 6063007 1 - C A SKCM 6063010 - 6062990 6063030 41 TTCTGGCCAAACAGAGAGAACAAGAAACGTGCAATGTTCCC TTCTGGCCAAACAGAGAGAACAATAAACGTGCAATGTTCCC < 41bp 0.828465412962036 0.505322866874796 0.3283649 0.507849 prediction 0.646285092174479 Functional Loss - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6063010 chr7:6063007 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51738 0 0 0 6 6062995 6063016 mRNA hsa-miR-92a EIF2AK1 miRanda miRanda
4797 chr7 6063007 6063007 1 - C A SKCM 6063010 - 6062990 6063030 41 TTCTGGCCAAACAGAGAGAACAAGAAACGTGCAATGTTCCC TTCTGGCCAAACAGAGAGAACAATAAACGTGCAATGTTCCC < 41bp 0.828465412962036 0.505322866874796 0.3283649 0.507849 prediction 0.646285092174479 Functional Loss - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6063010 chr7:6063007 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51738 0 0 0 6 6062995 6063015 mRNA hsa-miR-363 EIF2AK1 miRanda miRanda
4798 chr7 6063007 6063007 1 - C A SKCM 6063010 - 6062990 6063030 41 TTCTGGCCAAACAGAGAGAACAAGAAACGTGCAATGTTCCC TTCTGGCCAAACAGAGAGAACAATAAACGTGCAATGTTCCC < 41bp 0.828465412962036 0.505322866874796 0.3283649 0.507849 prediction 0.646285092174479 Functional Loss - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6063010 chr7:6063007 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51738 0 0 0 6 6062995 6063016 mRNA hsa-miR-367 EIF2AK1 miRanda miRanda
4799 chr7 6063007 6063007 1 - C A SKCM 6063010 - 6062990 6063030 41 TTCTGGCCAAACAGAGAGAACAAGAAACGTGCAATGTTCCC TTCTGGCCAAACAGAGAGAACAATAAACGTGCAATGTTCCC < 41bp 0.828465412962036 0.505322866874796 0.3283649 0.507849 prediction 0.646285092174479 Functional Loss - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6063010 chr7:6063007 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51738 0 0 0 6 6062995 6063016 mRNA hsa-miR-92b EIF2AK1 miRanda miRanda
4800 chr14 57075934 57075934 1 + G T UCEC 57075931 + 57075911 57075951 41 CTTAATCACGCCCGGTGGACCTGGGGAGACCAGACAACACT CTTAATCACGCCCGGTGGACCTGTGGAGACCAGACAACACT < 41bp 0.858106136730569 0.535018446035966 0.27942818 0.089048445 prediction 0.646175381389207 Functional Loss - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57075931 chr14:57075934 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51743 0 0 0 1 57075921 57075944 mRNA hsa-miR-149 C14orf101 miRanda miRanda
4801 chr19 55044960 55044960 1 + A C UCEC 55044956 + 55044936 55044976 41 CTCCTTCTCTTCCAGGTGCTCAGGACAAGTTCTCCCTGTCA CTCCTTCTCTTCCAGGTGCTCAGGCCAAGTTCTCCCTGTCA < 41bp 0.851758148483419 0.528865867719524 0.91976607 0.9174277 prediction 0.64578456152779 Functional Loss - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55044956 chr19:55044960 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_51764 0 0 0 2 55044952 55044970 mRNA hsa-miR-146a KIR3DX1 miRanda miRanda
4802 chr19 55044960 55044960 1 + A C UCEC 55044956 + 55044936 55044976 41 CTCCTTCTCTTCCAGGTGCTCAGGACAAGTTCTCCCTGTCA CTCCTTCTCTTCCAGGTGCTCAGGCCAAGTTCTCCCTGTCA < 41bp 0.851758148483419 0.528865867719524 0.91976607 0.9174277 prediction 0.64578456152779 Functional Loss - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55044956 chr19:55044960 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_51764 0 0 0 2 55044951 55044970 mRNA hsa-miR-146b-5p KIR3DX1 miRanda miRanda
4803 chr2 220370084 220370084 1 + G T LUSC 220370081 + 220370061 220370101 41 CTGGAGTCAGATCAAGTCCGCAGGGTATGGAAGGCTGGGTC CTGGAGTCAGATCAAGTCCGCAGTGTATGGAAGGCTGGGTC < 41bp 0.822778142344607 0.451394752002576 0.9242448 0.8775179 prediction 0.645556284689214 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220370081 chr2:220370084 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_51777 0 0 1 1 220370073 220370084 mRNA hsa-miR-485-5p GMPPA miRanda miRanda
4804 chr1 203276539 203276539 1 + G T UCEC 203276536 + 203276516 203276556 41 CTGGGCCGGAGCAGCCCCTCCAAGAACTACGTGATGGCAGT CTGGGCCGGAGCAGCCCCTCCAATAACTACGTGATGGCAGT < 41bp 0.863687540887476 0.54131604859599 0.16487417 0.01688376 prediction 0.644742984582973 Functional Loss - BTG2 ENSG00000159388 CDS Human protein_coding chr1:203276536 chr1:203276539 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51820 0 0 0 1 203276534 203276557 mRNA hsa-miR-217 BTG2 miRanda miRanda
4805 chr12 52282939 52282939 1 + A C STAD 52282935 + 52282915 52282955 41 CTTTCCTTGATGTGAACCAGCAGGACAAAGGAGGGGACACG CTTTCCTTGATGTGAACCAGCAGGCCAAAGGAGGGGACACG < 41bp 0.873326857988344 0.551075326963034 0.62909913 0.8822013 prediction 0.644503062050621 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52282935 chr12:52282939 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_51833 0 0 0 1 52282918 52282939 mRNA hsa-miR-370 ANKRD33 miRanda miRanda
4806 chr17 72739479 72739479 1 + G T KIRC 72739476 + 72739456 72739496 41 AAATCTTCTTTCGACAACATCAGGGTAGGTCCTCCCTTCCC AAATCTTCTTTCGACAACATCAGTGTAGGTCCTCCCTTCCC < 41bp 0.82170756198582 0.44605864139692 0.94121385 0.30275604 prediction 0.64341512397164 Functional Loss - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72739476 chr17:72739479 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_51882 0 0 0 1 72739477 72739479 mRNA hsa-miR-216a RAB37 miRanda miRanda
4807 chr16 30999192 30999192 1 + G T LUAD 30999189 + 30999169 30999209 41 TGCTACGATGGATCACCCTACAGGAGCTACGAGGATTTCAA TGCTACGATGGATCACCCTACAGTAGCTACGAGGATTTCAA < 41bp 0.865168459586118 0.544316897030092 0.24246201 0.050364763 prediction 0.641703125112052 Functional Loss - HSD3B7 ENSG00000099377 CDS Human protein_coding chr16:30999189 chr16:30999192 nonsynonymous SNV 0.949 1 24 hm5C_associated_SNPs_51959 0 0 1 1 30999192 30999212 mRNA hsa-miR-653 HSD3B7 miRanda miRanda
4808 chr7 102584971 102584971 1 + G T OV 102584968 + 102584948 102584988 41 CATATCCTGAGTCATTTGACCAAGACACAGAAGATGATGAA CATATCCTGAGTCATTTGACCAATACACAGAAGATGATGAA < 41bp 0.820841470312692 0.487451156766989 0.19558981 0.038221 prediction 0.641682940625383 Functional Loss - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584968 chr7:102584971 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51960 0 0 1 5 102584970 102584992 mRNA hsa-miR-181a LRRC17 miRanda miRanda
4809 chr7 102584971 102584971 1 + G T OV 102584968 + 102584948 102584988 41 CATATCCTGAGTCATTTGACCAAGACACAGAAGATGATGAA CATATCCTGAGTCATTTGACCAATACACAGAAGATGATGAA < 41bp 0.820841470312692 0.487451156766989 0.19558981 0.038221 prediction 0.641682940625383 Functional Loss - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584968 chr7:102584971 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51960 0 0 1 5 102584970 102584992 mRNA hsa-miR-181b LRRC17 miRanda miRanda
4810 chr7 102584971 102584971 1 + G T OV 102584968 + 102584948 102584988 41 CATATCCTGAGTCATTTGACCAAGACACAGAAGATGATGAA CATATCCTGAGTCATTTGACCAATACACAGAAGATGATGAA < 41bp 0.820841470312692 0.487451156766989 0.19558981 0.038221 prediction 0.641682940625383 Functional Loss - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584968 chr7:102584971 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51960 0 0 1 5 102584970 102584992 mRNA hsa-miR-181c LRRC17 miRanda miRanda
4811 chr7 102584971 102584971 1 + G T OV 102584968 + 102584948 102584988 41 CATATCCTGAGTCATTTGACCAAGACACAGAAGATGATGAA CATATCCTGAGTCATTTGACCAATACACAGAAGATGATGAA < 41bp 0.820841470312692 0.487451156766989 0.19558981 0.038221 prediction 0.641682940625383 Functional Loss - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584968 chr7:102584971 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51960 0 0 1 5 102584956 102584977 mRNA hsa-miR-218 LRRC17 miRanda miRanda
4812 chr7 102584971 102584971 1 + G T OV 102584968 + 102584948 102584988 41 CATATCCTGAGTCATTTGACCAAGACACAGAAGATGATGAA CATATCCTGAGTCATTTGACCAATACACAGAAGATGATGAA < 41bp 0.820841470312692 0.487451156766989 0.19558981 0.038221 prediction 0.641682940625383 Functional Loss - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584968 chr7:102584971 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51960 0 0 1 5 102584970 102584992 mRNA hsa-miR-181d LRRC17 miRanda miRanda
4813 chr7 66483040 66483040 1 + G T UCEC 66483037 + 66483017 66483057 41 AAGTCCTGTGGCGGCCACTGCAAGAAAGGCAAATGTGAATC AAGTCCTGTGGCGGCCACTGCAATAAAGGCAAATGTGAATC < 41bp 0.820336944581681 0.459719320389641 0.64018095 0.27289695 prediction 0.640673889163362 Functional Loss - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66483037 chr7:66483040 nonsynonymous SNV 0.812 0 24 hm5C_associated_SNPs_52004 0 0 0 2 66483034 66483055 mRNA hsa-miR-23a TYW1 miRanda miRanda
4814 chr7 66483040 66483040 1 + G T UCEC 66483037 + 66483017 66483057 41 AAGTCCTGTGGCGGCCACTGCAAGAAAGGCAAATGTGAATC AAGTCCTGTGGCGGCCACTGCAATAAAGGCAAATGTGAATC < 41bp 0.820336944581681 0.459719320389641 0.64018095 0.27289695 prediction 0.640673889163362 Functional Loss - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66483037 chr7:66483040 nonsynonymous SNV 0.812 0 24 hm5C_associated_SNPs_52004 0 0 0 2 66483034 66483055 mRNA hsa-miR-23b TYW1 miRanda miRanda
4815 chr17 26688278 26688278 1 + G T rs76813129 26688275 + 26688255 26688295 41 GCGAGCTGGGAGAACTGTAACTGGTGCTTCATCATCAAGTC GCGAGCTGGGAGAACTGTAACTGTTGCTTCATCATCAAGTC < 41bp 0.85643059595304 0.536534674793921 0.16892219 0.10728374 prediction 0.639791842318237 Functional Loss - TMEM199 ENSG00000258924 ncRNA_intronic Human processed_transcript chr17:26688275 chr17:26688278 . . 0 24 hm5C_associated_SNPs_52048 0 0 1 4 26688275 26688283 mRNA hsa-miR-29a TMEM199 miRanda miRanda
4816 chr17 26688278 26688278 1 + G T rs76813129 26688275 + 26688255 26688295 41 GCGAGCTGGGAGAACTGTAACTGGTGCTTCATCATCAAGTC GCGAGCTGGGAGAACTGTAACTGTTGCTTCATCATCAAGTC < 41bp 0.85643059595304 0.536534674793921 0.16892219 0.10728374 prediction 0.639791842318237 Functional Loss - TMEM199 ENSG00000258924 ncRNA_intronic Human processed_transcript chr17:26688275 chr17:26688278 . . 0 24 hm5C_associated_SNPs_52048 0 0 1 4 26688275 26688283 mRNA hsa-miR-29b TMEM199 miRanda miRanda
4817 chr17 26688278 26688278 1 + G T rs76813129 26688275 + 26688255 26688295 41 GCGAGCTGGGAGAACTGTAACTGGTGCTTCATCATCAAGTC GCGAGCTGGGAGAACTGTAACTGTTGCTTCATCATCAAGTC < 41bp 0.85643059595304 0.536534674793921 0.16892219 0.10728374 prediction 0.639791842318237 Functional Loss - TMEM199 ENSG00000258924 ncRNA_intronic Human processed_transcript chr17:26688275 chr17:26688278 . . 0 24 hm5C_associated_SNPs_52048 0 0 1 4 26688275 26688291 mRNA hsa-miR-143 TMEM199 miRanda miRanda
4818 chr17 26688278 26688278 1 + G T rs76813129 26688275 + 26688255 26688295 41 GCGAGCTGGGAGAACTGTAACTGGTGCTTCATCATCAAGTC GCGAGCTGGGAGAACTGTAACTGTTGCTTCATCATCAAGTC < 41bp 0.85643059595304 0.536534674793921 0.16892219 0.10728374 prediction 0.639791842318237 Functional Loss - TMEM199 ENSG00000258924 ncRNA_intronic Human processed_transcript chr17:26688275 chr17:26688278 . . 0 24 hm5C_associated_SNPs_52048 0 0 1 4 26688275 26688283 mRNA hsa-miR-29c TMEM199 miRanda miRanda
4819 chr1 110168957 110168957 1 + G T OV 110168954 + 110168934 110168974 41 CCTGCAGGCTCTACAAGGAACAGGGTGAGGGGCAGGGTGAC CCTGCAGGCTCTACAAGGAACAGTGTGAGGGGCAGGGTGAC < 41bp 0.81982276256806 0.445508155912758 0.8599204 0.3951522 prediction 0.63964552513612 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168954 chr1:110168957 nonsynonymous SNV 0.951 2 24 hm5C_associated_SNPs_52061 0 0 1 2 110168941 110168960 mRNA hsa-miR-10a AMPD2 miRanda miRanda
4820 chr1 110168957 110168957 1 + G T OV 110168954 + 110168934 110168974 41 CCTGCAGGCTCTACAAGGAACAGGGTGAGGGGCAGGGTGAC CCTGCAGGCTCTACAAGGAACAGTGTGAGGGGCAGGGTGAC < 41bp 0.81982276256806 0.445508155912758 0.8599204 0.3951522 prediction 0.63964552513612 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168954 chr1:110168957 nonsynonymous SNV 0.951 2 24 hm5C_associated_SNPs_52061 0 0 1 2 110168941 110168960 mRNA hsa-miR-10b AMPD2 miRanda miRanda
4821 chr19 40172674 40172674 1 + G T GBM 40172671 + 40172651 40172691 41 CTGCAGGTGGATTTCCATACCGAGATGAAGGAAGACTCAGA CTGCAGGTGGATTTCCATACCGATATGAAGGAAGACTCAGA < 41bp 0.837272886836804 0.517476553553576 0.5663133 0.17504638 prediction 0.639592666566455 Functional Loss - LGALS17A ENSG00000226025 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:40172671 chr19:40172674 . . 0 24 hm5C_associated_SNPs_52065 0 0 0 1 40172658 40172682 mRNA hsa-miR-205 LOC400696 miRanda miRanda
4822 chr9 40715993 40715993 1 + G T COAD 40715991 + 40715971 40716011 41 GTCCCAAACAAGAGAGAGCTCAGAGGCTGTCCCAGAGAAGA GTCCCAAACAAGAGAGAGCTCATAGGCTGTCCCAGAGAAGA < 41bp 0.819626494982591 0.496661832307798 0.8566742 0.381956 prediction 0.639252989965181 Functional Loss - FAM74A3 ENSG00000204844 ncRNA_exonic Human other chr9:40715991 chr9:40715993 . . 0 23 hm5C_associated_SNPs_52083 0 0 0 2 40715987 40716008 mRNA hsa-miR-330-5p FAM74A3 miRanda miRanda
4823 chr9 40715993 40715993 1 + G T COAD 40715991 + 40715971 40716011 41 GTCCCAAACAAGAGAGAGCTCAGAGGCTGTCCCAGAGAAGA GTCCCAAACAAGAGAGAGCTCATAGGCTGTCCCAGAGAAGA < 41bp 0.819626494982591 0.496661832307798 0.8566742 0.381956 prediction 0.639252989965181 Functional Loss - FAM74A3 ENSG00000204844 ncRNA_exonic Human other chr9:40715991 chr9:40715993 . . 0 23 hm5C_associated_SNPs_52083 0 0 0 2 40715990 40716008 mRNA hsa-miR-326 FAM74A3 miRanda miRanda
4824 chr22 30642823 30642823 1 + G T UCEC 30642820 + 30642800 30642840 41 CAGAAACAGCTATATTTAGCCGGGATCCCCAGTCCAGGAAG CAGAAACAGCTATATTTAGCCGGTATCCCCAGTCCAGGAAG < 41bp 0.838227310888472 0.518706585159635 0.86792886 0.24049771 prediction 0.639041451457675 Functional Loss - LIF ENSG00000268812 ncRNA_exonic Human antisense chr22:30642820 chr22:30642823 . . 0 24 hm5C_associated_SNPs_52095 0 0 0 2 30642817 30642837 mRNA hsa-miR-378 MGC20647 miRanda miRanda
4825 chr22 30642823 30642823 1 + G T UCEC 30642820 + 30642800 30642840 41 CAGAAACAGCTATATTTAGCCGGGATCCCCAGTCCAGGAAG CAGAAACAGCTATATTTAGCCGGTATCCCCAGTCCAGGAAG < 41bp 0.838227310888472 0.518706585159635 0.86792886 0.24049771 prediction 0.639041451457675 Functional Loss - LIF ENSG00000268812 ncRNA_exonic Human antisense chr22:30642820 chr22:30642823 . . 0 24 hm5C_associated_SNPs_52095 0 0 0 2 30642816 30642837 mRNA hsa-miR-422a MGC20647 miRanda miRanda
4826 chr1 110775544 110775544 1 + G T UCEC 110775541 + 110775521 110775561 41 CTTTAAACACAGAGACCTGCCAAGACGCCCTCTCGTCCAAC CTTTAAACACAGAGACCTGCCAATACGCCCTCTCGTCCAAC < 41bp 0.81911984944556 0.470010582763299 0.047296047 0.012127638 prediction 0.638239698891121 Functional Loss - KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110775541 chr1:110775544 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52133 0 0 0 1 110775526 110775547 mRNA hsa-miR-431 KCNC4 miRanda miRanda
4827 chr1 112002250 112002250 1 + A T SKCM 112002246 + 112002226 112002266 41 AAGCACGTGGTGCAAAGCATCTCCACACAGCAGGTACACAA AAGCACGTGGTGCAAAGCATCTCCTCACAGCAGGTACACAA < 41bp 0.823272425429695 0.504489974725888 0.9185933 0.05730775 prediction 0.637564901407613 Functional Loss - ATP5F1 ENSG00000116459 CDS Human protein_coding chr1:112002246 chr1:112002250 nonsynonymous SNV 0.506 2 25 hm5C_associated_SNPs_52165 0 0 1 2 112002248 112002258 mRNA hsa-miR-204 ATP5F1 miRanda miRanda
4828 chr1 112002250 112002250 1 + A T SKCM 112002246 + 112002226 112002266 41 AAGCACGTGGTGCAAAGCATCTCCACACAGCAGGTACACAA AAGCACGTGGTGCAAAGCATCTCCTCACAGCAGGTACACAA < 41bp 0.823272425429695 0.504489974725888 0.9185933 0.05730775 prediction 0.637564901407613 Functional Loss - ATP5F1 ENSG00000116459 CDS Human protein_coding chr1:112002246 chr1:112002250 nonsynonymous SNV 0.506 2 25 hm5C_associated_SNPs_52165 0 0 1 2 112002240 112002258 mRNA hsa-miR-370 ATP5F1 miRanda miRanda
4829 chr1 115398126 115398126 1 + G T UCEC 115398123 + 115398103 115398143 41 CTTTGCATTGTTCGTACCACCGAGATCAAGCAGCAGTCAGG CTTTGCATTGTTCGTACCACCGATATCAAGCAGCAGTCAGG < 41bp 0.821649442064804 0.502960537541924 0.49451068 0.04247713 prediction 0.63737780904576 Functional Loss - SYCP1 ENSG00000198765 CDS Human protein_coding chr1:115398123 chr1:115398126 nonsynonymous SNV 0.007 4 24 hm5C_associated_SNPs_52178 0 0 0 1 115398117 115398138 mRNA hsa-miR-218 SYCP1 miRanda miRanda
4830 chr11 66288771 66288771 1 + G T STAD 66288768 + 66288748 66288788 41 TTCCCAGCGTCCCCGTCTTCCTAGAGGTTTCTGGCCAGTTT TTCCCAGCGTCCCCGTCTTCCTATAGGTTTCTGGCCAGTTT < 41bp 0.818636215339292 0.458840206225727 0.5648333 0.38930348 prediction 0.637272430678585 Functional Loss - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66288768 chr11:66288771 stopgain 0.990 0 24 hm5C_associated_SNPs_52185 0 0 1 2 66288767 66288787 mRNA hsa-miR-193a-3p BBS1 miRanda miRanda
4831 chr11 66288771 66288771 1 + G T STAD 66288768 + 66288748 66288788 41 TTCCCAGCGTCCCCGTCTTCCTAGAGGTTTCTGGCCAGTTT TTCCCAGCGTCCCCGTCTTCCTATAGGTTTCTGGCCAGTTT < 41bp 0.818636215339292 0.458840206225727 0.5648333 0.38930348 prediction 0.637272430678585 Functional Loss - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66288768 chr11:66288771 stopgain 0.990 0 24 hm5C_associated_SNPs_52185 0 0 1 2 66288766 66288787 mRNA hsa-miR-193b BBS1 miRanda miRanda
4832 chr1 155110166 155110166 1 + A C rs541358920 155110162 + 155110142 155110182 41 GGCCTCTTCTGCAGTGTCTTCACCATCAGCATGTACCTCTC GGCCTCTTCTGCAGTGTCTTCACCCTCAGCATGTACCTCTC < 41bp 0.896159995050664 0.578271125767348 0.11194849 0.13513279 prediction 0.63577773856663 Functional Loss - SLC50A1 ENSG00000169241 CDS Human protein_coding chr1:155110162 chr1:155110166 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_52262 0 0 1 1 155110155 155110177 mRNA hsa-miR-155 RAG1AP1 miRanda miRanda
4833 chr19 12783926 12783926 1 + G T BRCA 12783923 + 12783903 12783943 41 ACAAAGACACAGGGGAGCTGCTGGGCGAGTGAGTCCTTGTG ACAAAGACACAGGGGAGCTGCTGTGCGAGTGAGTCCTTGTG < 41bp 0.81648137332221 0.443252522910894 0.72355676 0.13263404 prediction 0.63296274664442 Functional Loss - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12783923 chr19:12783926 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_52433 0 0 0 1 12783923 12783930 mRNA hsa-miR-328 WDR83 miRanda miRanda
4834 chr19 23329189 23329189 1 + G T LUAD 23329186 + 23329166 23329206 41 TACACATAAAAGAATTCATACTGGAGAGAAACCCTATGAAT TACACATAAAAGAATTCATACTGTAGAGAAACCCTATGAAT < 41bp 0.846786301005587 0.530595528663483 0.2118099 0.04453343 prediction 0.632381544684209 Functional Loss - ZNF730 ENSG00000183850 CDS Human protein_coding chr19:23329186 chr19:23329189 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_52470 0 0 0 4 23329186 23329209 mRNA hsa-miR-181a ZNF730 miRanda miRanda
4835 chr19 23329189 23329189 1 + G T LUAD 23329186 + 23329166 23329206 41 TACACATAAAAGAATTCATACTGGAGAGAAACCCTATGAAT TACACATAAAAGAATTCATACTGTAGAGAAACCCTATGAAT < 41bp 0.846786301005587 0.530595528663483 0.2118099 0.04453343 prediction 0.632381544684209 Functional Loss - ZNF730 ENSG00000183850 CDS Human protein_coding chr19:23329186 chr19:23329189 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_52470 0 0 0 4 23329187 23329209 mRNA hsa-miR-181b ZNF730 miRanda miRanda
4836 chr19 23329189 23329189 1 + G T LUAD 23329186 + 23329166 23329206 41 TACACATAAAAGAATTCATACTGGAGAGAAACCCTATGAAT TACACATAAAAGAATTCATACTGTAGAGAAACCCTATGAAT < 41bp 0.846786301005587 0.530595528663483 0.2118099 0.04453343 prediction 0.632381544684209 Functional Loss - ZNF730 ENSG00000183850 CDS Human protein_coding chr19:23329186 chr19:23329189 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_52470 0 0 0 4 23329188 23329209 mRNA hsa-miR-181c ZNF730 miRanda miRanda
4837 chr19 23329189 23329189 1 + G T LUAD 23329186 + 23329166 23329206 41 TACACATAAAAGAATTCATACTGGAGAGAAACCCTATGAAT TACACATAAAAGAATTCATACTGTAGAGAAACCCTATGAAT < 41bp 0.846786301005587 0.530595528663483 0.2118099 0.04453343 prediction 0.632381544684209 Functional Loss - ZNF730 ENSG00000183850 CDS Human protein_coding chr19:23329186 chr19:23329189 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_52470 0 0 0 4 23329184 23329209 mRNA hsa-miR-181d ZNF730 miRanda miRanda
4838 chr14 50081017 50081017 1 + G T UCEC 50081014 + 50080994 50081034 41 TCATTCCATTCCATCTCTGCCAAGATTTGGATACCGCAAAA TCATTCCATTCCATCTCTGCCAATATTTGGATACCGCAAAA < 41bp 0.81578123706081 0.472495344461769 0.28236184 0.12565926 prediction 0.63156247412162 Functional Loss - LRR1 ENSG00000165501 CDS Human protein_coding chr14:50081014 chr14:50081017 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52517 0 0 1 2 50081016 50081036 mRNA hsa-miR-129-5p PPIL5 miRanda miRanda
4839 chr14 50081017 50081017 1 + G T UCEC 50081014 + 50080994 50081034 41 TCATTCCATTCCATCTCTGCCAAGATTTGGATACCGCAAAA TCATTCCATTCCATCTCTGCCAATATTTGGATACCGCAAAA < 41bp 0.81578123706081 0.472495344461769 0.28236184 0.12565926 prediction 0.63156247412162 Functional Loss - LRR1 ENSG00000165501 CDS Human protein_coding chr14:50081014 chr14:50081017 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52517 0 0 1 2 50081016 50081034 mRNA hsa-miR-450a PPIL5 miRanda miRanda
4840 chr4 186320906 186320906 1 - C A rs4317244 186320909 - 186320889 186320929 41 ACCAGCACTTCCTTTTCCCACTGGTATTTTCTACACTTCCG ACCAGCACTTCCTTTTCCCACTGTTATTTTCTACACTTCCG < 41bp 0.815167898399696 0.499956011439651 0.056678295 0.08220154 prediction 0.630335796799392 Functional Loss - ANKRD37 ENSG00000186352 CDS Human protein_coding chr4:186320909 chr4:186320906 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_52574 0 0 0 2 186320889 186320910 mRNA hsa-miR-1 UFSP2 miRanda miRanda
4841 chr4 186320906 186320906 1 - C A rs4317244 186320909 - 186320889 186320929 41 ACCAGCACTTCCTTTTCCCACTGGTATTTTCTACACTTCCG ACCAGCACTTCCTTTTCCCACTGTTATTTTCTACACTTCCG < 41bp 0.815167898399696 0.499956011439651 0.056678295 0.08220154 prediction 0.630335796799392 Functional Loss - ANKRD37 ENSG00000186352 CDS Human protein_coding chr4:186320909 chr4:186320906 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_52574 0 0 0 2 186320889 186320910 mRNA hsa-miR-206 UFSP2 miRanda miRanda
4842 chr22 43559013 43559013 1 + G T UCEC 43559010 + 43558990 43559030 41 CAGAGTGAGTGCCCGGCCCACCAGGGACTGCAGCTGCACCA CAGAGTGAGTGCCCGGCCCACCATGGACTGCAGCTGCACCA < 41bp 0.867418516890965 0.552280374042451 0.90354383 0.26633888 prediction 0.630276285697027 Functional Loss - TSPO ENSG00000100300 CDS Human protein_coding chr22:43559010 chr22:43559013 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_52579 0 0 1 1 43559009 43559033 mRNA hsa-miR-138 TSPO miRanda miRanda
4843 chr16 20471598 20471598 1 + G T LUAD 20471595 + 20471575 20471615 41 GCTAGTGATGTGTTGGATCACTGGGCTGACATGGAGAAGGT GCTAGTGATGTGTTGGATCACTGTGCTGACATGGAGAAGGT < 41bp 0.814737893764993 0.45964584039218 0.8821856 0.20788318 prediction 0.629475787529985 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20471595 chr16:20471598 nonsynonymous SNV 0.891 4 24 hm5C_associated_SNPs_52623 0 0 0 1 20471588 20471611 mRNA hsa-miR-136 ACSM2A miRanda miRanda
4844 chrX 35938165 35938165 1 + G T SKCM 35938163 + 35938143 35938183 41 TTAAGGAGCCCGTCAAGCCACAGGTGACACACTAAGGGGTG TTAAGGAGCCCGTCAAGCCACATGTGACACACTAAGGGGTG < 41bp 0.814606373132665 0.492216169397711 0.68077844 0.25762722 prediction 0.62921274626533 Functional Loss - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35938163 chrX:35938165 nonsynonymous SNV 0.510 2 23 hm5C_associated_SNPs_52634 0 0 0 1 35938162 35938165 mRNA hsa-miR-505 CXorf22 miRanda miRanda
4845 chr3 19492815 19492815 1 + G T UCEC 19492812 + 19492792 19492832 41 CGGGGGAGTATCTGCTGCGTCAAGGGGATGCTTTGCAGGCC CGGGGGAGTATCTGCTGCGTCAATGGGATGCTTTGCAGGCC < 41bp 0.814078919489166 0.463624311769938 0.9062352 0.42331162 prediction 0.628157838978332 Functional Loss - KCNH8 ENSG00000183960 CDS Human protein_coding chr3:19492812 chr3:19492815 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_52701 0 0 0 1 19492800 19492823 mRNA hsa-miR-324-5p KCNH8 miRanda miRanda
4846 chr16 55360448 55360448 1 + G T LUAD 55360446 + 55360426 55360466 41 ATGCGGCCGCTGCAGCTGCCCAGAGCTACCCTGGCTACCTG ATGCGGCCGCTGCAGCTGCCCATAGCTACCCTGGCTACCTG < 41bp 0.846176965726109 0.532178180712692 0.8587643 0.278342 prediction 0.627997570026834 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55360446 chr16:55360448 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_52713 0 0 0 2 55360428 55360451 mRNA hsa-miR-330-5p IRX6 miRanda miRanda
4847 chr16 55360448 55360448 1 + G T LUAD 55360446 + 55360426 55360466 41 ATGCGGCCGCTGCAGCTGCCCAGAGCTACCCTGGCTACCTG ATGCGGCCGCTGCAGCTGCCCATAGCTACCCTGGCTACCTG < 41bp 0.846176965726109 0.532178180712692 0.8587643 0.278342 prediction 0.627997570026834 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55360446 chr16:55360448 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_52713 0 0 0 2 55360432 55360451 mRNA hsa-miR-326 IRX6 miRanda miRanda
4848 chr2 172412391 172412391 1 + G T rs148595636 172412388 + 172412368 172412408 41 AGGCAGTCTGGCACCTCAGTCTGGATTCTAACCATTTCACT AGGCAGTCTGGCACCTCAGTCTGTATTCTAACCATTTCACT < 41bp 0.849671856202105 0.535930120980656 0.4160841 0.25845516 prediction 0.627483470442898 Functional Loss - CYBRD1 ENSG00000071967 UTR3 Human protein_coding chr2:172412388 chr2:172412391 . . 0 24 hm5C_associated_SNPs_52736 0 0 0 1 172412385 172412407 mRNA hsa-miR-203 CYBRD1 miRanda miRanda
4849 chr12 110467387 110467387 1 + G T UCEC 110467384 + 110467364 110467404 41 TCGAACGAGTGCTCATTTTGCAAGACTGAGAGATTTCATCA TCGAACGAGTGCTCATTTTGCAATACTGAGAGATTTCATCA < 41bp 0.813634466974374 0.458633146013137 0.5497055 0.3796587 prediction 0.627268933948748 Functional Loss - ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110467384 chr12:110467387 nonsynonymous SNV 0.972 4 24 hm5C_associated_SNPs_52751 0 0 1 2 110467370 110467390 mRNA hsa-miR-431 ANKRD13A miRanda miRanda
4850 chr12 110467387 110467387 1 + G T UCEC 110467384 + 110467364 110467404 41 TCGAACGAGTGCTCATTTTGCAAGACTGAGAGATTTCATCA TCGAACGAGTGCTCATTTTGCAATACTGAGAGATTTCATCA < 41bp 0.813634466974374 0.458633146013137 0.5497055 0.3796587 prediction 0.627268933948748 Functional Loss - ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110467384 chr12:110467387 nonsynonymous SNV 0.972 4 24 hm5C_associated_SNPs_52751 0 0 1 2 110467374 110467399 mRNA hsa-miR-216b ANKRD13A miRanda miRanda
4851 chr8 70515555 70515555 1 + G T LUSC 70515553 + 70515533 70515573 41 GACCCAGAAAAGCCAGGTAACAGGTGTGTCATTGTTCCTCC GACCCAGAAAAGCCAGGTAACATGTGTGTCATTGTTCCTCC < 41bp 0.813324511406957 0.493186390039745 0.9036677 0.36679256 prediction 0.626649022813914 Functional Loss - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70515553 chr8:70515555 nonsynonymous SNV 0.994 5 23 hm5C_associated_SNPs_52779 0 0 0 1 70515546 70515555 mRNA hsa-miR-375 SULF1 miRanda miRanda
4852 chr2 27016114 27016114 1 + G T LUAD 27016112 + 27016092 27016132 41 CAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCCTTGAG CAAAGGATGTGCAACTGGCCCGTAGGATCCGGGGCCTTGAG < 41bp 0.812980260828918 0.494438244858288 0.8609494 0.30495822 prediction 0.625960521657836 Functional Loss - CENPA ENSG00000115163 CDS Human protein_coding chr2:27016112 chr2:27016114 synonymous SNV . 0 23 hm5C_associated_SNPs_52814 0 0 1 1 27016103 27016123 mRNA hsa-miR-127-3p CENPA miRanda miRanda
4853 chr2 44021678 44021678 1 + A C GBM 44021674 + 44021654 44021694 41 ATGGAAAATCTCTTGCAAGCCACAAAAAGCCATGTAGACAA ATGGAAAATCTCTTGCAAGCCACACAAAGCCATGTAGACAA < 41bp 0.854488705334382 0.541947141867384 0.165346 0.012626022 prediction 0.625083126933994 Functional Loss - DYNC2LI1 ENSG00000138036 CDS Human protein_coding chr2:44021674 chr2:44021678 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_52862 0 0 1 2 44021666 44021687 mRNA hsa-miR-135a DYNC2LI1 miRanda miRanda
4854 chr2 44021678 44021678 1 + A C GBM 44021674 + 44021654 44021694 41 ATGGAAAATCTCTTGCAAGCCACAAAAAGCCATGTAGACAA ATGGAAAATCTCTTGCAAGCCACACAAAGCCATGTAGACAA < 41bp 0.854488705334382 0.541947141867384 0.165346 0.012626022 prediction 0.625083126933994 Functional Loss - DYNC2LI1 ENSG00000138036 CDS Human protein_coding chr2:44021674 chr2:44021678 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_52862 0 0 1 2 44021666 44021687 mRNA hsa-miR-135b DYNC2LI1 miRanda miRanda
4855 chr14 77302651 77302651 1 + G T UCEC 77302649 + 77302629 77302669 41 TACAAGAGAACTACTACCTCCAGGAGATGGTACTGTGCCCC TACAAGAGAACTACTACCTCCATGAGATGGTACTGTGCCCC < 41bp 0.816475575076846 0.50403906924046 0.9260337 0.774789 prediction 0.624873011672771 Functional Loss - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77302649 chr14:77302651 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_52872 0 0 0 1 77302649 77302657 mRNA hsa-miR-653 C14orf166B miRanda miRanda
4856 chr20 62521335 62521335 1 + A C rs41278202 62521331 + 62521311 62521351 41 TTCACCCGCTGCAGAGCACACGCAACCCAGCCTCAGCATCA TTCACCCGCTGCAGAGCACACGCACCCCAGCCTCAGCATCA < 41bp 0.812133209365418 0.453824427555591 0.099044204 0.039917707 prediction 0.624266418730836 Functional Loss - TPD52L2 ENSG00000101150 UTR3 Human protein_coding chr20:62521331 chr20:62521335 . 0.000 0 25 hm5C_associated_SNPs_52906 0 0 1 1 62521322 62521345 mRNA hsa-miR-485-5p TPD52L2 miRanda miRanda
4857 chr15 99796216 99796216 1 + G T COAD 99796213 + 99796193 99796233 41 GTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTA GTGGCAAGGCTAGAAAAGCACAATAATTTGTTCTTAAATTA < 41bp 0.812126300734531 0.464560262873054 0.1693157 0.12591475 prediction 0.624252601469061 Functional Loss - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99796213 chr15:99796216 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52908 0 0 0 3 99796215 99796236 mRNA hsa-miR-374a LRRC28 miRanda miRanda
4858 chr15 99796216 99796216 1 + G T COAD 99796213 + 99796193 99796233 41 GTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTA GTGGCAAGGCTAGAAAAGCACAATAATTTGTTCTTAAATTA < 41bp 0.812126300734531 0.464560262873054 0.1693157 0.12591475 prediction 0.624252601469061 Functional Loss - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99796213 chr15:99796216 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52908 0 0 0 3 99796203 99796225 mRNA hsa-miR-495 LRRC28 miRanda miRanda
4859 chr15 99796216 99796216 1 + G T COAD 99796213 + 99796193 99796233 41 GTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTA GTGGCAAGGCTAGAAAAGCACAATAATTTGTTCTTAAATTA < 41bp 0.812126300734531 0.464560262873054 0.1693157 0.12591475 prediction 0.624252601469061 Functional Loss - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99796213 chr15:99796216 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52908 0 0 0 3 99796215 99796236 mRNA hsa-miR-374b LRRC28 miRanda miRanda
4860 chr14 54989231 54989231 1 + G T UCEC 54989228 + 54989208 54989248 41 AGAAGAGACCCAGTTCAGCACAAGAGTTTTCAAAAAGCAAA AGAAGAGACCCAGTTCAGCACAATAGTTTTCAAAAAGCAAA < 41bp 0.811745840333473 0.465245467015734 0.36856127 0.23595726 prediction 0.623491680666945 Functional Loss - CGRRF1 ENSG00000100532 CDS Human protein_coding chr14:54989228 chr14:54989231 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_52962 0 0 0 1 54989224 54989244 mRNA hsa-miR-129-5p CGRRF1 miRanda miRanda
4861 chr22 42276875 42276875 1 + G T UCEC 42276872 + 42276852 42276892 41 CGCCTGGTGCGCTGGCTGCTCAAGAAAGTCTTCCAGTGCCG CGCCTGGTGCGCTGGCTGCTCAATAAAGTCTTCCAGTGCCG < 41bp 0.884045840571166 0.572448009692449 0.42413634 0.15503111 prediction 0.623195661757435 Functional Loss - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42276872 chr22:42276875 stopgain 0.999 2 24 hm5C_associated_SNPs_52977 0 0 1 1 42276864 42276886 mRNA hsa-miR-7 SREBF2 miRanda miRanda
4862 chr1 231678318 231678318 1 + G T BLCA 231678316 + 231678296 231678336 41 CCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGT CCAGGTAGCCCAAGAGCTATCATGGGAAGATATGCATCAGT < 41bp 0.813067927081491 0.501564118733181 0.9473204 0.90187085 prediction 0.623007616696619 Functional Loss - TSNAX ENSG00000116918;ENSG00000270106 CDS Human other chr1:231678316 chr1:231678318 nonsynonymous SNV 0.517 4 23 hm5C_associated_SNPs_52995 0 0 1 1 231678311 231678332 mRNA hsa-miR-448 TSNAX-DISC1 miRanda miRanda
4863 chr11 64087315 64087315 1 + G T STAD 64087312 + 64087292 64087332 41 GGGTGTGCTGTTTGGAGTTCCTGGGGCCTTCACCCCTGGAT GGGTGTGCTGTTTGGAGTTCCTGTGGCCTTCACCCCTGGAT < 41bp 0.811476983449757 0.437345174590728 0.90733796 0.18938795 prediction 0.622953966899513 Functional Loss - PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64087312 chr11:64087315 nonsynonymous SNV 0.938 4 24 hm5C_associated_SNPs_52996 0 0 1 1 64087295 64087315 mRNA hsa-miR-873 PRDX5 miRanda miRanda
4864 chr7 98955975 98955975 1 + G T OV 98955973 + 98955953 98955993 41 TTGTGTTCAGGGTCTCGACTCTGAAGACAGAGTTCCTGCCG TTGTGTTCAGGGTCTCGACTCTTAAGACAGAGTTCCTGCCG < 41bp 0.811442397215148 0.498227762773501 0.032960087 0.010522306 prediction 0.622884794430295 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98955973 chr7:98955975 synonymous SNV . 0 23 hm5C_associated_SNPs_53001 0 0 1 1 98955970 98955991 mRNA hsa-miR-873 ARPC1A miRanda miRanda
4865 chr19 7975355 7975355 1 + G T LUAD 7975352 + 7975332 7975372 41 GTGCAGCAAATGCGGCGCTCCGGGAACAAGGAGGAGAACAA GTGCAGCAAATGCGGCGCTCCGGTAACAAGGAGGAGAACAA < 41bp 0.81066720847593 0.444721394838264 0.9171815 0.72320974 prediction 0.621334416951861 Functional Loss - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7975352 chr19:7975355 synonymous SNV . 0 24 hm5C_associated_SNPs_53086 0 0 1 2 7975355 7975379 mRNA hsa-miR-135a MAP2K7 miRanda miRanda
4866 chr19 7975355 7975355 1 + G T LUAD 7975352 + 7975332 7975372 41 GTGCAGCAAATGCGGCGCTCCGGGAACAAGGAGGAGAACAA GTGCAGCAAATGCGGCGCTCCGGTAACAAGGAGGAGAACAA < 41bp 0.81066720847593 0.444721394838264 0.9171815 0.72320974 prediction 0.621334416951861 Functional Loss - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7975352 chr19:7975355 synonymous SNV . 0 24 hm5C_associated_SNPs_53086 0 0 1 2 7975355 7975379 mRNA hsa-miR-135b MAP2K7 miRanda miRanda
4867 chr7 105641932 105641932 1 + G T TGCT 105641930 + 105641910 105641950 41 CGACACGAGTGTACACAGTCCTGGAGGAACTGAGTCCAGGA CGACACGAGTGTACACAGTCCTTGAGGAACTGAGTCCAGGA < 41bp 0.814135482503745 0.503494900964192 0.17563769 0.04935947 prediction 0.621281163079105 Functional Loss - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105641930 chr7:105641932 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_53090 0 0 0 3 105641926 105641949 mRNA hsa-miR-149 CDHR3 miRanda miRanda
4868 chr7 105641932 105641932 1 + G T TGCT 105641930 + 105641910 105641950 41 CGACACGAGTGTACACAGTCCTGGAGGAACTGAGTCCAGGA CGACACGAGTGTACACAGTCCTTGAGGAACTGAGTCCAGGA < 41bp 0.814135482503745 0.503494900964192 0.17563769 0.04935947 prediction 0.621281163079105 Functional Loss - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105641930 chr7:105641932 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_53090 0 0 0 3 105641929 105641949 mRNA hsa-miR-378 CDHR3 miRanda miRanda
4869 chr7 105641932 105641932 1 + G T TGCT 105641930 + 105641910 105641950 41 CGACACGAGTGTACACAGTCCTGGAGGAACTGAGTCCAGGA CGACACGAGTGTACACAGTCCTTGAGGAACTGAGTCCAGGA < 41bp 0.814135482503745 0.503494900964192 0.17563769 0.04935947 prediction 0.621281163079105 Functional Loss - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105641930 chr7:105641932 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_53090 0 0 0 3 105641928 105641949 mRNA hsa-miR-422a CDHR3 miRanda miRanda
4870 chr7 142983817 142983817 1 + A C rs566240291 142983813 + 142983793 142983833 41 TCCTGATCTGCAGAGCTTGGCGGCAGTCCCCACATTAGAGC TCCTGATCTGCAGAGCTTGGCGGCCGTCCCCACATTAGAGC < 41bp 0.880629877942654 0.570338365177206 0.29409784 0.3371668 prediction 0.620583025530896 Functional Loss - TMEM139 ENSG00000178826 CDS Human protein_coding chr7:142983813 chr7:142983817 synonymous SNV . 0 25 hm5C_associated_SNPs_53140 0 0 0 2 142983803 142983828 mRNA hsa-miR-299-3p TMEM139 miRanda miRanda
4871 chr7 142983817 142983817 1 + A C rs566240291 142983813 + 142983793 142983833 41 TCCTGATCTGCAGAGCTTGGCGGCAGTCCCCACATTAGAGC TCCTGATCTGCAGAGCTTGGCGGCCGTCCCCACATTAGAGC < 41bp 0.880629877942654 0.570338365177206 0.29409784 0.3371668 prediction 0.620583025530896 Functional Loss - TMEM139 ENSG00000178826 CDS Human protein_coding chr7:142983813 chr7:142983817 synonymous SNV . 0 25 hm5C_associated_SNPs_53140 0 0 0 2 142983805 142983826 mRNA hsa-miR-491-5p TMEM139 miRanda miRanda
4872 chr2 231174651 231174651 1 + G T LUSC 231174648 + 231174628 231174668 41 TTATCTTCTAGATGAGAAACCTGGATGAGTGTGAGGTGTGC TTATCTTCTAGATGAGAAACCTGTATGAGTGTGAGGTGTGC < 41bp 0.810180954665879 0.450073757605006 0.34896088 0.15184805 prediction 0.620361909331758 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231174648 chr2:231174651 nonsynonymous SNV 0.024 3 24 hm5C_associated_SNPs_53150 0 0 0 1 231174641 231174663 mRNA hsa-miR-342-3p SP140 miRanda miRanda
4873 chr10 101507079 101507079 1 + G T LUAD 101507076 + 101507056 101507096 41 TCTTAACCTTGGGATTTGAACGCGTGTTGACCAGTGGATGT TCTTAACCTTGGGATTTGAACGCTTGTTGACCAGTGGATGT < 41bp 0.875417404682171 0.56524942230442 0.7094073 0.2902228 prediction 0.620335964755503 Functional Loss - CUTC ENSG00000119929 CDS Human protein_coding chr10:101507076 chr10:101507079 nonsynonymous SNV 0.689 1 24 hm5C_associated_SNPs_53153 0 0 1 1 101507066 101507087 mRNA hsa-miR-505 CUTC miRanda miRanda
4874 chr12 53513037 53513037 1 + G T UCEC 53513035 + 53513015 53513055 41 TATCCTGCATGCCACGTTGCCAGGTGAGCCAACTAAGGTAG TATCCTGCATGCCACGTTGCCATGTGAGCCAACTAAGGTAG < 41bp 0.809553527772878 0.479464564750841 0.91304135 0.89321965 prediction 0.619107055545755 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53513035 chr12:53513037 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_53229 0 0 0 7 53513035 53513037 mRNA hsa-miR-15a SOAT2 miRanda miRanda
4875 chr12 53513037 53513037 1 + G T UCEC 53513035 + 53513015 53513055 41 TATCCTGCATGCCACGTTGCCAGGTGAGCCAACTAAGGTAG TATCCTGCATGCCACGTTGCCATGTGAGCCAACTAAGGTAG < 41bp 0.809553527772878 0.479464564750841 0.91304135 0.89321965 prediction 0.619107055545755 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53513035 chr12:53513037 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_53229 0 0 0 7 53513035 53513037 mRNA hsa-miR-16 SOAT2 miRanda miRanda
4876 chr12 53513037 53513037 1 + G T UCEC 53513035 + 53513015 53513055 41 TATCCTGCATGCCACGTTGCCAGGTGAGCCAACTAAGGTAG TATCCTGCATGCCACGTTGCCATGTGAGCCAACTAAGGTAG < 41bp 0.809553527772878 0.479464564750841 0.91304135 0.89321965 prediction 0.619107055545755 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53513035 chr12:53513037 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_53229 0 0 0 7 53513032 53513037 mRNA hsa-miR-103 SOAT2 miRanda miRanda
4877 chr12 53513037 53513037 1 + G T UCEC 53513035 + 53513015 53513055 41 TATCCTGCATGCCACGTTGCCAGGTGAGCCAACTAAGGTAG TATCCTGCATGCCACGTTGCCATGTGAGCCAACTAAGGTAG < 41bp 0.809553527772878 0.479464564750841 0.91304135 0.89321965 prediction 0.619107055545755 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53513035 chr12:53513037 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_53229 0 0 0 7 53513032 53513037 mRNA hsa-miR-107 SOAT2 miRanda miRanda
4878 chr12 53513037 53513037 1 + G T UCEC 53513035 + 53513015 53513055 41 TATCCTGCATGCCACGTTGCCAGGTGAGCCAACTAAGGTAG TATCCTGCATGCCACGTTGCCATGTGAGCCAACTAAGGTAG < 41bp 0.809553527772878 0.479464564750841 0.91304135 0.89321965 prediction 0.619107055545755 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53513035 chr12:53513037 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_53229 0 0 0 7 53513035 53513037 mRNA hsa-miR-15b SOAT2 miRanda miRanda
4879 chr12 53513037 53513037 1 + G T UCEC 53513035 + 53513015 53513055 41 TATCCTGCATGCCACGTTGCCAGGTGAGCCAACTAAGGTAG TATCCTGCATGCCACGTTGCCATGTGAGCCAACTAAGGTAG < 41bp 0.809553527772878 0.479464564750841 0.91304135 0.89321965 prediction 0.619107055545755 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53513035 chr12:53513037 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_53229 0 0 0 7 53513036 53513037 mRNA hsa-miR-195 SOAT2 miRanda miRanda
4880 chr12 53513037 53513037 1 + G T UCEC 53513035 + 53513015 53513055 41 TATCCTGCATGCCACGTTGCCAGGTGAGCCAACTAAGGTAG TATCCTGCATGCCACGTTGCCATGTGAGCCAACTAAGGTAG < 41bp 0.809553527772878 0.479464564750841 0.91304135 0.89321965 prediction 0.619107055545755 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53513035 chr12:53513037 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_53229 0 0 0 7 53513037 53513037 mRNA hsa-miR-497 SOAT2 miRanda miRanda
4881 chr16 56678084 56678084 1 + G T UCEC 56678081 + 56678061 56678101 41 GAGTACAAATGCACCTCCTGCAAGAAGAGTGAGTGTGGGGC GAGTACAAATGCACCTCCTGCAATAAGAGTGAGTGTGGGGC < 41bp 0.809512604328496 0.447090130168139 0.32161367 0.054279298 prediction 0.619025208656993 Functional Loss - MT1DP ENSG00000205361 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:56678081 chr16:56678084 . . 0 24 hm5C_associated_SNPs_53237 0 0 0 6 56678079 56678088 mRNA hsa-miR-15a MT1DP miRanda miRanda
4882 chr16 56678084 56678084 1 + G T UCEC 56678081 + 56678061 56678101 41 GAGTACAAATGCACCTCCTGCAAGAAGAGTGAGTGTGGGGC GAGTACAAATGCACCTCCTGCAATAAGAGTGAGTGTGGGGC < 41bp 0.809512604328496 0.447090130168139 0.32161367 0.054279298 prediction 0.619025208656993 Functional Loss - MT1DP ENSG00000205361 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:56678081 chr16:56678084 . . 0 24 hm5C_associated_SNPs_53237 0 0 0 6 56678078 56678088 mRNA hsa-miR-16 MT1DP miRanda miRanda
4883 chr16 56678084 56678084 1 + G T UCEC 56678081 + 56678061 56678101 41 GAGTACAAATGCACCTCCTGCAAGAAGAGTGAGTGTGGGGC GAGTACAAATGCACCTCCTGCAATAAGAGTGAGTGTGGGGC < 41bp 0.809512604328496 0.447090130168139 0.32161367 0.054279298 prediction 0.619025208656993 Functional Loss - MT1DP ENSG00000205361 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:56678081 chr16:56678084 . . 0 24 hm5C_associated_SNPs_53237 0 0 0 6 56678077 56678088 mRNA hsa-miR-15b MT1DP miRanda miRanda
4884 chr16 56678084 56678084 1 + G T UCEC 56678081 + 56678061 56678101 41 GAGTACAAATGCACCTCCTGCAAGAAGAGTGAGTGTGGGGC GAGTACAAATGCACCTCCTGCAATAAGAGTGAGTGTGGGGC < 41bp 0.809512604328496 0.447090130168139 0.32161367 0.054279298 prediction 0.619025208656993 Functional Loss - MT1DP ENSG00000205361 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:56678081 chr16:56678084 . . 0 24 hm5C_associated_SNPs_53237 0 0 0 6 56678078 56678088 mRNA hsa-miR-195 MT1DP miRanda miRanda
4885 chr16 56678084 56678084 1 + G T UCEC 56678081 + 56678061 56678101 41 GAGTACAAATGCACCTCCTGCAAGAAGAGTGAGTGTGGGGC GAGTACAAATGCACCTCCTGCAATAAGAGTGAGTGTGGGGC < 41bp 0.809512604328496 0.447090130168139 0.32161367 0.054279298 prediction 0.619025208656993 Functional Loss - MT1DP ENSG00000205361 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:56678081 chr16:56678084 . . 0 24 hm5C_associated_SNPs_53237 0 0 0 6 56678077 56678088 mRNA hsa-miR-424 MT1DP miRanda miRanda
4886 chr16 56678084 56678084 1 + G T UCEC 56678081 + 56678061 56678101 41 GAGTACAAATGCACCTCCTGCAAGAAGAGTGAGTGTGGGGC GAGTACAAATGCACCTCCTGCAATAAGAGTGAGTGTGGGGC < 41bp 0.809512604328496 0.447090130168139 0.32161367 0.054279298 prediction 0.619025208656993 Functional Loss - MT1DP ENSG00000205361 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:56678081 chr16:56678084 . . 0 24 hm5C_associated_SNPs_53237 0 0 0 6 56678078 56678088 mRNA hsa-miR-497 MT1DP miRanda miRanda
4887 chrX 123480562 123480562 1 + G T LUSC 123480560 + 123480540 123480580 41 CGAGAAGCTCCTGCTTGCCACTGGGCTGGATGGCAGCTATT CGAGAAGCTCCTGCTTGCCACTTGGCTGGATGGCAGCTATT < 41bp 0.818300498145931 0.509173241727249 0.5283144 0.14713085 prediction 0.618254512837363 Functional Loss - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123480560 chrX:123480562 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_53282 0 0 0 2 123480557 123480578 mRNA hsa-miR-22 SH2D1A miRanda miRanda
4888 chrX 123480562 123480562 1 + G T LUSC 123480560 + 123480540 123480580 41 CGAGAAGCTCCTGCTTGCCACTGGGCTGGATGGCAGCTATT CGAGAAGCTCCTGCTTGCCACTTGGCTGGATGGCAGCTATT < 41bp 0.818300498145931 0.509173241727249 0.5283144 0.14713085 prediction 0.618254512837363 Functional Loss - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123480560 chrX:123480562 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_53282 0 0 0 2 123480542 123480563 mRNA hsa-miR-152 SH2D1A miRanda miRanda
4889 chr12 2929369 2929369 1 + A C STAD 2929365 + 2929345 2929385 41 TGACAGGGCAGCTGGTGTCCCTCAAGAAATGGATGCTGGAG TGACAGGGCAGCTGGTGTCCCTCACGAAATGGATGCTGGAG < 41bp 0.809076547254315 0.389245987256744 0.2023746 0.043607533 prediction 0.618153094508629 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2929365 chr12:2929369 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_53290 0 0 1 1 2929364 2929384 mRNA hsa-miR-338-3p ITFG2 miRanda miRanda
4890 chr12 2930940 2930940 1 + G T UCEC 2930938 + 2930918 2930958 41 TGGATCACCAGCTCTTTGCCCTGGAGAAACTGGATGTCACC TGGATCACCAGCTCTTTGCCCTTGAGAAACTGGATGTCACC < 41bp 0.829553484024149 0.520731343670003 0.25903648 0.055042446 prediction 0.617644280708293 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930938 chr12:2930940 synonymous SNV . 0 23 hm5C_associated_SNPs_53318 0 0 1 1 2930930 2930952 mRNA hsa-miR-145 ITFG2 miRanda miRanda
4891 chr5 7878172 7878172 1 + G T LIHC 7878170 + 7878150 7878190 41 CGCACTCCCGGTGGCATCACCTGCATCCTCGAGGACAGACC CGCACTCCCGGTGGCATCACCTTCATCCTCGAGGACAGACC < 41bp 0.811723079408023 0.502914065871492 0.37403664 0.1684491 prediction 0.617618027073062 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7878170 chr5:7878172 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_53323 0 0 1 1 7878152 7878173 mRNA hsa-miR-125a-3p MTRR miRanda miRanda
4892 chr6 158449952 158449952 1 + G T LUSC 158449950 + 158449930 158449970 41 TTTGAAGAAAATCCTCAGCTCGGGGGTGTTCTATTTCTCAT TTTGAAGAAAATCCTCAGCTCGTGGGTGTTCTATTTCTCAT < 41bp 0.81290656146716 0.504172406738272 0.92913014 0.72878635 prediction 0.617468309457776 Functional Loss - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158449950 chr6:158449952 nonsynonymous SNV 0.378 4 23 hm5C_associated_SNPs_53335 0 0 1 1 158449944 158449969 mRNA hsa-miR-539 SYNJ2 miRanda miRanda
4893 chr15 40765115 40765115 1 + A C rs186655194 40765111 + 40765091 40765131 41 GCAGGGTTCTTGCCTGGTAGCTCCAGGACCCAGCTCTGCAG GCAGGGTTCTTGCCTGGTAGCTCCCGGACCCAGCTCTGCAG < 41bp 0.808506966824018 0.462869147943915 0.93741405 0.08949843 prediction 0.617013933648036 Functional Loss - CHST14 ENSG00000169105 UTR3 Human protein_coding chr15:40765111 chr15:40765115 . . 0 25 hm5C_associated_SNPs_53377 0 0 1 1 40765094 40765117 mRNA hsa-miR-422a CHST14 miRanda miRanda
4894 chr1 213145986 213145986 1 + G T BRCA 213145984 + 213145964 213146004 41 CAGCTTTAAAACCTACTTCTCAGGAAACTACTTTCACCACG CAGCTTTAAAACCTACTTCTCATGAAACTACTTTCACCACG < 41bp 0.808436476892319 0.493094894392289 0.8582622 0.16350731 prediction 0.616872953784639 Functional Loss - VASH2 ENSG00000143494 CDS Human protein_coding chr1:213145984 chr1:213145986 stopgain 1.000 1 23 hm5C_associated_SNPs_53385 0 0 0 3 213145969 213145989 mRNA hsa-miR-125b VASH2 miRanda miRanda
4895 chr1 213145986 213145986 1 + G T BRCA 213145984 + 213145964 213146004 41 CAGCTTTAAAACCTACTTCTCAGGAAACTACTTTCACCACG CAGCTTTAAAACCTACTTCTCATGAAACTACTTTCACCACG < 41bp 0.808436476892319 0.493094894392289 0.8582622 0.16350731 prediction 0.616872953784639 Functional Loss - VASH2 ENSG00000143494 CDS Human protein_coding chr1:213145984 chr1:213145986 stopgain 1.000 1 23 hm5C_associated_SNPs_53385 0 0 0 3 213145966 213145989 mRNA hsa-miR-125a-5p VASH2 miRanda miRanda
4896 chr1 213145986 213145986 1 + G T BRCA 213145984 + 213145964 213146004 41 CAGCTTTAAAACCTACTTCTCAGGAAACTACTTTCACCACG CAGCTTTAAAACCTACTTCTCATGAAACTACTTTCACCACG < 41bp 0.808436476892319 0.493094894392289 0.8582622 0.16350731 prediction 0.616872953784639 Functional Loss - VASH2 ENSG00000143494 CDS Human protein_coding chr1:213145984 chr1:213145986 stopgain 1.000 1 23 hm5C_associated_SNPs_53385 0 0 0 3 213145970 213145990 mRNA hsa-miR-384 VASH2 miRanda miRanda
4897 chr2 73450605 73450605 1 + G T UCEC 73450603 + 73450583 73450623 41 ACACTCTGGAGTTGAAGCCTCAGGACCGTGAGCAGCTTGAC ACACTCTGGAGTTGAAGCCTCATGACCGTGAGCAGCTTGAC < 41bp 0.832081080229509 0.523850275524626 0.603546 0.08792734 prediction 0.616461609409765 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73450603 chr2:73450605 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_53406 0 0 1 3 73450598 73450621 mRNA hsa-miR-302d SMYD5 miRanda miRanda
4898 chr2 73450605 73450605 1 + G T UCEC 73450603 + 73450583 73450623 41 ACACTCTGGAGTTGAAGCCTCAGGACCGTGAGCAGCTTGAC ACACTCTGGAGTTGAAGCCTCATGACCGTGAGCAGCTTGAC < 41bp 0.832081080229509 0.523850275524626 0.603546 0.08792734 prediction 0.616461609409765 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73450603 chr2:73450605 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_53406 0 0 1 3 73450597 73450621 mRNA hsa-miR-373 SMYD5 miRanda miRanda
4899 chr2 73450605 73450605 1 + G T UCEC 73450603 + 73450583 73450623 41 ACACTCTGGAGTTGAAGCCTCAGGACCGTGAGCAGCTTGAC ACACTCTGGAGTTGAAGCCTCATGACCGTGAGCAGCTTGAC < 41bp 0.832081080229509 0.523850275524626 0.603546 0.08792734 prediction 0.616461609409765 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73450603 chr2:73450605 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_53406 0 0 1 3 73450599 73450621 mRNA hsa-miR-520e SMYD5 miRanda miRanda
4900 chr15 92663743 92663743 1 + G T ESCA 92663741 + 92663721 92663761 41 CTCTCAAACCCTGTGTTCACCTGCATCATCCTGGCCGCCTG CTCTCAAACCCTGTGTTCACCTTCATCATCCTGGCCGCCTG < 41bp 0.808101089427706 0.493327224255756 0.261218 0.09803522 prediction 0.616202178855412 Functional Loss - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92663741 chr15:92663743 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53428 0 0 1 1 92663719 92663744 mRNA hsa-miR-125a-3p SLCO3A1 miRanda miRanda
4901 chr19 1271175 1271175 1 + G T LUSC 1271172 + 1271152 1271192 41 AGACAGGGAGACCCAGAGATCTCGGGGATTTGGGTTTGTCA AGACAGGGAGACCCAGAGATCTCTGGGATTTGGGTTTGTCA < 41bp 0.807906574390133 0.432759722337101 0.87983 0.5551995 prediction 0.615813148780266 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1271172 chr19:1271175 nonsynonymous SNV 0.962 3 24 hm5C_associated_SNPs_53448 0 0 1 1 1271171 1271194 mRNA hsa-miR-19b CIRBP miRanda miRanda
4902 chr6 133138113 133138113 1 + G T UCEC 133138110 + 133138090 133138130 41 TCCCAATAGGTTGATGACAACAAGAAACTAGGAGAATGGGT TCCCAATAGGTTGATGACAACAATAAACTAGGAGAATGGGT < 41bp 0.813634077972381 0.506278437536277 0.42110682 0.09585923 prediction 0.614711280872208 Functional Loss - RPS12 ENSG00000112306 CDS Human protein_coding chr6:133138110 chr6:133138113 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_53525 0 0 1 1 133138104 133138124 mRNA hsa-miR-384 SNORA33 miRanda miRanda
4903 chr4 115544698 115544698 1 + A C UCEC 115544694 + 115544674 115544714 41 CCAAATATGAAAGGATAATGCAGAAGTACAACCTGCTGCCA CCAAATATGAAAGGATAATGCAGACGTACAACCTGCTGCCA < 41bp 0.89096085434256 0.583796745347545 0.65116364 0.58283955 prediction 0.614328217990028 Functional Loss - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115544694 chr4:115544698 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_53557 0 0 0 2 115544691 115544712 mRNA hsa-miR-214 UGT8 miRanda miRanda
4904 chr4 115544698 115544698 1 + A C UCEC 115544694 + 115544674 115544714 41 CCAAATATGAAAGGATAATGCAGAAGTACAACCTGCTGCCA CCAAATATGAAAGGATAATGCAGACGTACAACCTGCTGCCA < 41bp 0.89096085434256 0.583796745347545 0.65116364 0.58283955 prediction 0.614328217990028 Functional Loss - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115544694 chr4:115544698 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_53557 0 0 0 2 115544678 115544699 mRNA hsa-miR-544 UGT8 miRanda miRanda
4905 chr1 113266731 113266731 1 + G T UCEC 113266729 + 113266709 113266749 41 GACCTGTCGGGATGGAGCTGCAGCAGTGGACACAAAGTCAA GACCTGTCGGGATGGAGCTGCATCAGTGGACACAAAGTCAA < 41bp 0.819350971940763 0.512284298170047 0.23605803 0.18370652 prediction 0.614133347541432 Functional Loss - FAM19A3 ENSG00000184599 CDS Human protein_coding chr1:113266729 chr1:113266731 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53570 0 0 0 1 113266725 113266744 mRNA hsa-miR-599 FAM19A3 miRanda miRanda
4906 chr2 88482275 88482275 1 + G T GBM 88482273 + 88482253 88482293 41 CGTCTGGTCGTGGCAGTGAACCGCAATGACATCATCCACAG CGTCTGGTCGTGGCAGTGAACCTCAATGACATCATCCACAG < 41bp 0.834141136468969 0.527361887561228 0.09223452 0.119247675 prediction 0.613558497815481 Functional Loss - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88482273 chr2:88482275 nonsynonymous SNV 0.962 1 23 hm5C_associated_SNPs_53606 0 0 0 2 88482264 88482284 mRNA hsa-miR-33a THNSL2 miRanda miRanda
4907 chr2 88482275 88482275 1 + G T GBM 88482273 + 88482253 88482293 41 CGTCTGGTCGTGGCAGTGAACCGCAATGACATCATCCACAG CGTCTGGTCGTGGCAGTGAACCTCAATGACATCATCCACAG < 41bp 0.834141136468969 0.527361887561228 0.09223452 0.119247675 prediction 0.613558497815481 Functional Loss - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88482273 chr2:88482275 nonsynonymous SNV 0.962 1 23 hm5C_associated_SNPs_53606 0 0 0 2 88482265 88482284 mRNA hsa-miR-33b THNSL2 miRanda miRanda
4908 chr17 20239313 20239313 1 + G T BLCA 20239310 + 20239290 20239330 41 AGAACGAGAAAAGATGGACACTGGGGTTGTACTTCTCTCAG AGAACGAGAAAAGATGGACACTGTGGTTGTACTTCTCTCAG < 41bp 0.827520465113825 0.520750391286826 0.69575346 0.18585533 prediction 0.613540147653997 Functional Loss - CCDC144CP ENSG00000154898 ncRNA_exonic Human transcribed_processed_pseudogene chr17:20239310 chr17:20239313 . . 0 24 hm5C_associated_SNPs_53608 0 0 0 2 20239312 20239333 mRNA hsa-miR-125b CCDC144C miRanda miRanda
4909 chr17 20239313 20239313 1 + G T BLCA 20239310 + 20239290 20239330 41 AGAACGAGAAAAGATGGACACTGGGGTTGTACTTCTCTCAG AGAACGAGAAAAGATGGACACTGTGGTTGTACTTCTCTCAG < 41bp 0.827520465113825 0.520750391286826 0.69575346 0.18585533 prediction 0.613540147653997 Functional Loss - CCDC144CP ENSG00000154898 ncRNA_exonic Human transcribed_processed_pseudogene chr17:20239310 chr17:20239313 . . 0 24 hm5C_associated_SNPs_53608 0 0 0 2 20239309 20239333 mRNA hsa-miR-125a-5p CCDC144C miRanda miRanda
4910 chr16 31121591 31121591 1 + G T UCEC 31121588 + 31121568 31121608 41 CGACAGCTGCTGGATGACCACAAGGATGTGGTGACCCTCTT CGACAGCTGCTGGATGACCACAATGATGTGGTGACCCTCTT < 41bp 0.806703445730924 0.430973442629407 0.5875236 0.2212413 prediction 0.613406891461849 Functional Loss - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121588 chr16:31121591 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_53618 0 0 1 2 31121581 31121602 mRNA hsa-miR-197 BCKDK miRanda miRanda
4911 chr16 31121591 31121591 1 + G T UCEC 31121588 + 31121568 31121608 41 CGACAGCTGCTGGATGACCACAAGGATGTGGTGACCCTCTT CGACAGCTGCTGGATGACCACAATGATGTGGTGACCCTCTT < 41bp 0.806703445730924 0.430973442629407 0.5875236 0.2212413 prediction 0.613406891461849 Functional Loss - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121588 chr16:31121591 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_53618 0 0 1 2 31121569 31121592 mRNA hsa-miR-9 BCKDK miRanda miRanda
4912 chr15 76075404 76075404 1 + A C GBM 76075400 + 76075380 76075420 41 AGCAGGAGAGACTGTGTGAGCAAAATGAGAGGCTTCGGGAG AGCAGGAGAGACTGTGTGAGCAAACTGAGAGGCTTCGGGAG < 41bp 0.816052254765884 0.509570846766092 0.69661987 0.72910124 prediction 0.612962815999585 Functional Loss - MIR4313;UBE2Q2 ENSG00000187812 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:76075400 chr15:76075404 . . 0 25 hm5C_associated_SNPs_53651 0 0 0 1 76075399 76075421 mRNA hsa-miR-150 LOC441728 miRanda miRanda
4913 chr8 30623765 30623765 1 + G T UCEC 30623762 + 30623742 30623782 41 GGTCTTATTTGACTGGATGACGAGAATTGGGTACCACATAT GGTCTTATTTGACTGGATGACGATAATTGGGTACCACATAT < 41bp 0.842066334799902 0.535718153877597 0.47287416 0.17680728 prediction 0.61269636184461 Functional Loss - UBXN8 ENSG00000104691 ncRNA_exonic Human protein_coding chr8:30623762 chr8:30623765 . 0.004 0 24 hm5C_associated_SNPs_53669 0 0 1 1 30623763 30623784 mRNA hsa-miR-190 UBXN8 miRanda miRanda
4914 chr20 20258002 20258002 1 + G T LUAD 20258000 + 20257980 20258020 41 GCCGCCGGAGTCACTATGTACCGGGATGCGATCCTGGCCCA GCCGCCGGAGTCACTATGTACCTGGATGCGATCCTGGCCCA < 41bp 0.848924635765745 0.542627813330731 0.8787395 0.116832614 prediction 0.612593644870027 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20258000 chr20:20258002 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_53679 0 0 0 1 20257989 20258009 mRNA hsa-miR-324-5p C20orf26 miRanda miRanda
4915 chr3 49749981 49749981 1 + G T CESC 49749979 + 49749959 49749999 41 CATTGAGCACGGTGATCGCACAGGGTCTCTCTTTGCCTTCA CATTGAGCACGGTGATCGCACATGGTCTCTCTTTGCCTTCA < 41bp 0.839364856036048 0.533074853611619 0.9309563 0.6175354 prediction 0.612580004848858 Functional Loss - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49749979 chr3:49749981 nonsynonymous SNV 0.112 4 23 hm5C_associated_SNPs_53682 0 0 1 1 49749964 49749986 mRNA hsa-miR-504 RNF123 miRanda miRanda
4916 chr17 20319895 20319895 1 + G T LUSC 20319892 + 20319872 20319912 41 GCCGGATCAGGTCCTGGGGCCGGGGGAAGCACTTGCTGTCA GCCGGATCAGGTCCTGGGGCCGGTGGAAGCACTTGCTGTCA < 41bp 0.865060414407444 0.559114572489884 0.909441 0.8604367 prediction 0.611891683835119 Functional Loss - USP32P3 ENSG00000189423;ENSG00000237911 ncRNA_exonic Human other chr17:20319892 chr17:20319895 . . 0 24 hm5C_associated_SNPs_53721 0 0 0 4 20319886 20319906 mRNA hsa-miR-373 CCDC144C miRanda miRanda
4917 chr17 20319895 20319895 1 + G T LUSC 20319892 + 20319872 20319912 41 GCCGGATCAGGTCCTGGGGCCGGGGGAAGCACTTGCTGTCA GCCGGATCAGGTCCTGGGGCCGGTGGAAGCACTTGCTGTCA < 41bp 0.865060414407444 0.559114572489884 0.909441 0.8604367 prediction 0.611891683835119 Functional Loss - USP32P3 ENSG00000189423;ENSG00000237911 ncRNA_exonic Human other chr17:20319892 chr17:20319895 . . 0 24 hm5C_associated_SNPs_53721 0 0 0 4 20319886 20319906 mRNA hsa-miR-520e CCDC144C miRanda miRanda
4918 chr17 20319895 20319895 1 + G T LUSC 20319892 + 20319872 20319912 41 GCCGGATCAGGTCCTGGGGCCGGGGGAAGCACTTGCTGTCA GCCGGATCAGGTCCTGGGGCCGGTGGAAGCACTTGCTGTCA < 41bp 0.865060414407444 0.559114572489884 0.909441 0.8604367 prediction 0.611891683835119 Functional Loss - USP32P3 ENSG00000189423;ENSG00000237911 ncRNA_exonic Human other chr17:20319892 chr17:20319895 . . 0 24 hm5C_associated_SNPs_53721 0 0 0 4 20319886 20319906 mRNA hsa-miR-520b CCDC144C miRanda miRanda
4919 chr17 20319895 20319895 1 + G T LUSC 20319892 + 20319872 20319912 41 GCCGGATCAGGTCCTGGGGCCGGGGGAAGCACTTGCTGTCA GCCGGATCAGGTCCTGGGGCCGGTGGAAGCACTTGCTGTCA < 41bp 0.865060414407444 0.559114572489884 0.909441 0.8604367 prediction 0.611891683835119 Functional Loss - USP32P3 ENSG00000189423;ENSG00000237911 ncRNA_exonic Human other chr17:20319892 chr17:20319895 . . 0 24 hm5C_associated_SNPs_53721 0 0 0 4 20319885 20319906 mRNA hsa-miR-520c-3p CCDC144C miRanda miRanda
4920 chr9 139379184 139379184 1 + G T BLCA 139379181 + 139379161 139379201 41 CAGTCCGGCTGACGTGGCACCAGGGCCAATCTGCTCAGCTA CAGTCCGGCTGACGTGGCACCAGTGCCAATCTGCTCAGCTA < 41bp 0.88961429556541 0.584170370082846 0.91866255 0.32856986 prediction 0.610887850965127 Functional Loss - C9orf163 ENSG00000196366 CDS Human lincRNA chr9:139379181 chr9:139379184 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_53804 0 0 0 1 139379168 139379189 lncRNA hsa-miR-328-3p C9orf163 miRanda starBase2
4921 chr1 153747920 153747920 1 + G T UCEC 153747918 + 153747898 153747938 41 AGGTTTTCGGAAGGGAGGATCAGGGATGTTTGCGAGCGGCT AGGTTTTCGGAAGGGAGGATCATGGATGTTTGCGAGCGGCT < 41bp 0.8341211154743 0.528811264595374 0.9161725 0.45553988 prediction 0.610619701757853 Functional Loss - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153747918 chr1:153747920 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_53823 0 0 0 1 153747900 153747923 mRNA hsa-miR-339-5p SLC27A3 miRanda miRanda
4922 chr2 157367401 157367401 1 + A C LUSC 157367397 + 157367377 157367417 41 TCCATGGTGGTGTGAGATATCTGCAGAAGGCCATCATGAAG TCCATGGTGGTGTGAGATATCTGCCGAAGGCCATCATGAAG < 41bp 0.898112732288968 0.592866207911466 0.18008658 0.15510672 prediction 0.610493048755003 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157367397 chr2:157367401 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_53832 0 0 1 2 157367394 157367416 mRNA hsa-miR-433 GPD2 miRanda miRanda
4923 chr2 157367401 157367401 1 + A C LUSC 157367397 + 157367377 157367417 41 TCCATGGTGGTGTGAGATATCTGCAGAAGGCCATCATGAAG TCCATGGTGGTGTGAGATATCTGCCGAAGGCCATCATGAAG < 41bp 0.898112732288968 0.592866207911466 0.18008658 0.15510672 prediction 0.610493048755003 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157367397 chr2:157367401 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_53832 0 0 1 2 157367382 157367405 mRNA hsa-miR-544 GPD2 miRanda miRanda
4924 chr2 85662864 85662864 1 + G T COAD 85662861 + 85662841 85662881 41 TCACCCTGGCAGTGCTTCTCCGAGGCCGGGTCTTCAACATT TCACCCTGGCAGTGCTTCTCCGATGCCGGGTCTTCAACATT < 41bp 0.805075371584014 0.42119307026711 0.9242404 0.7011263 prediction 0.610150743168028 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85662861 chr2:85662864 nonsynonymous SNV 0.527 4 24 hm5C_associated_SNPs_53855 0 0 0 3 85662862 85662884 mRNA hsa-miR-1 SH2D6 miRanda miRanda
4925 chr2 85662864 85662864 1 + G T COAD 85662861 + 85662841 85662881 41 TCACCCTGGCAGTGCTTCTCCGAGGCCGGGTCTTCAACATT TCACCCTGGCAGTGCTTCTCCGATGCCGGGTCTTCAACATT < 41bp 0.805075371584014 0.42119307026711 0.9242404 0.7011263 prediction 0.610150743168028 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85662861 chr2:85662864 nonsynonymous SNV 0.527 4 24 hm5C_associated_SNPs_53855 0 0 0 3 85662862 85662884 mRNA hsa-miR-206 SH2D6 miRanda miRanda
4926 chr2 85662864 85662864 1 + G T COAD 85662861 + 85662841 85662881 41 TCACCCTGGCAGTGCTTCTCCGAGGCCGGGTCTTCAACATT TCACCCTGGCAGTGCTTCTCCGATGCCGGGTCTTCAACATT < 41bp 0.805075371584014 0.42119307026711 0.9242404 0.7011263 prediction 0.610150743168028 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85662861 chr2:85662864 nonsynonymous SNV 0.527 4 24 hm5C_associated_SNPs_53855 0 0 0 3 85662859 85662880 mRNA hsa-miR-653 SH2D6 miRanda miRanda
4927 chr16 21190853 21190853 1 + A C rs1063087 21190849 + 21190829 21190869 41 TCTGCCAGCCATGAAGTCTGCAGAATTCGAGGGGCTTTACC TCTGCCAGCCATGAAGTCTGCAGACTTCGAGGGGCTTTACC < 41bp 0.805053193589493 0.435300675999659 0.5225234 0.57434833 prediction 0.610106387178986 Functional Loss - TMEM159 ENSG00000011638 CDS Human protein_coding chr16:21190849 chr16:21190853 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_53860 0 0 0 1 21190833 21190854 mRNA hsa-miR-544 TMEM159 miRanda miRanda
4928 chr8 39785599 39785599 1 + A C COAD 39785595 + 39785575 39785615 41 GCCAAAGGAGAATAAGACCTCTGAAGACCCTTCAAAACTGG GCCAAAGGAGAATAAGACCTCTGACGACCCTTCAAAACTGG < 41bp 0.805007200400667 0.422556906565045 0.08269358 0.02650392 prediction 0.610014400801334 Functional Loss - IDO1 ENSG00000131203 CDS Human protein_coding chr8:39785595 chr8:39785599 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_53869 0 0 0 1 39785595 39785617 mRNA hsa-miR-145 IDO1 miRanda miRanda
4929 chr17 55123153 55123153 1 + G T COAD 55123150 + 55123130 55123170 41 GGCATCTTTGACGACAGCTTCGAGATCCCCACGTTCTCTCC GGCATCTTTGACGACAGCTTCGATATCCCCACGTTCTCTCC < 41bp 0.854680904856816 0.549770490380853 0.75131977 0.18805161 prediction 0.609820828951926 Functional Loss - RNF126P1 ENSG00000261192 ncRNA_exonic Human transcribed_processed_pseudogene chr17:55123150 chr17:55123153 . . 0 24 hm5C_associated_SNPs_53887 0 0 0 1 55123141 55123162 mRNA hsa-miR-491-5p RNF126P1 miRanda miRanda
4930 chr14 70235955 70235955 1 + G T UCEC 70235952 + 70235932 70235972 41 TATAGTTGAGAATTTATCCTCAAGAGTCAGCTGGCAGGTTT TATAGTTGAGAATTTATCCTCAATAGTCAGCTGGCAGGTTT < 41bp 0.804762340043983 0.452269899208342 0.4202258 0.061175227 prediction 0.609524680087967 Functional Loss - SRSF5 ENSG00000100650 CDS Human protein_coding chr14:70235952 chr14:70235955 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53905 0 0 1 1 70235952 70235976 mRNA hsa-miR-495 SFRS5 miRanda miRanda
4931 chr19 58118185 58118185 1 + G T LUAD 58118182 + 58118162 58118202 41 TCAACACCAAAGAGTTCACACTGGAGAAAGGCCTTATGAGT TCAACACCAAAGAGTTCACACTGTAGAAAGGCCTTATGAGT < 41bp 0.804735909817737 0.436204319677646 0.08641249 0.01840815 prediction 0.609471819635475 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58118182 chr19:58118185 nonsynonymous SNV 0.022 3 24 hm5C_associated_SNPs_53909 0 0 0 3 58118164 58118186 mRNA hsa-miR-199a-5p ZNF530 miRanda miRanda
4932 chr19 58118185 58118185 1 + G T LUAD 58118182 + 58118162 58118202 41 TCAACACCAAAGAGTTCACACTGGAGAAAGGCCTTATGAGT TCAACACCAAAGAGTTCACACTGTAGAAAGGCCTTATGAGT < 41bp 0.804735909817737 0.436204319677646 0.08641249 0.01840815 prediction 0.609471819635475 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58118182 chr19:58118185 nonsynonymous SNV 0.022 3 24 hm5C_associated_SNPs_53909 0 0 0 3 58118166 58118186 mRNA hsa-miR-199b-5p ZNF530 miRanda miRanda
4933 chr19 58118185 58118185 1 + G T LUAD 58118182 + 58118162 58118202 41 TCAACACCAAAGAGTTCACACTGGAGAAAGGCCTTATGAGT TCAACACCAAAGAGTTCACACTGTAGAAAGGCCTTATGAGT < 41bp 0.804735909817737 0.436204319677646 0.08641249 0.01840815 prediction 0.609471819635475 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58118182 chr19:58118185 nonsynonymous SNV 0.022 3 24 hm5C_associated_SNPs_53909 0 0 0 3 58118164 58118185 mRNA hsa-miR-125a-3p ZNF530 miRanda miRanda
4934 chr2 27016114 27016114 1 + G T LUAD 27016111 + 27016091 27016131 41 CCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCCTTGA CCAAAGGATGTGCAACTGGCCCGTAGGATCCGGGGCCTTGA < 41bp 0.876615240565821 0.571954869564062 0.46009743 0.050269514 prediction 0.609320742003517 Functional Loss - CENPA ENSG00000115163 CDS Human protein_coding chr2:27016111 chr2:27016114 synonymous SNV . 0 24 hm5C_associated_SNPs_53925 0 0 1 1 27016103 27016123 mRNA hsa-miR-127-3p CENPA miRanda miRanda
4935 chr6 50682838 50682838 1 + G T BLCA 50682835 + 50682815 50682855 41 CCTCTTCCTTCCAGATACGTCACGACGGATCAAACAGCTAC CCTCTTCCTTCCAGATACGTCACTACGGATCAAACAGCTAC < 41bp 0.804569130052907 0.44819128098701 0.09987596 0.05512911 prediction 0.609138260105813 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50682835 chr6:50682838 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53934 0 0 0 1 50682833 50682856 mRNA hsa-miR-142-3p TFAP2D miRanda miRanda
4936 chr3 51991072 51991072 1 + G T rs188008816 51991069 + 51991049 51991089 41 CTCACAGGTGGTCCCCAGGCCAAGATGGGCAGGTGTCACAA CTCACAGGTGGTCCCCAGGCCAATATGGGCAGGTGTCACAA < 41bp 0.838533669702564 0.534113307180227 0.106833726 0.040530533 prediction 0.608840725044673 Functional Loss - GPR62 ENSG00000180929 UTR3 Human protein_coding chr3:51991069 chr3:51991072 . . 0 24 hm5C_associated_SNPs_53957 0 0 0 1 51991067 51991090 mRNA hsa-miR-758 GPR62 miRanda miRanda
4937 chr12 129431955 129431955 1 + G T LUAD 129431952 + 129431932 129431972 41 GCGGTGGTGAAGAATTGCTTCGCGGTGGTGAATAGCTCTGT GCGGTGGTGAAGAATTGCTTCGCTGTGGTGAATAGCTCTGT < 41bp 0.803673590544822 0.431832838620344 0.52165514 0.39424002 prediction 0.607347181089644 Functional Loss - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129431952 chr12:129431955 synonymous SNV . 0 24 hm5C_associated_SNPs_54048 0 0 0 1 129431942 129431963 mRNA hsa-miR-197 GLT1D1 miRanda miRanda
4938 chr17 42430078 42430078 1 + G T HNSC 42430076 + 42430056 42430096 41 TGCTGTCCTGCTGGCTTCCGCTGCGCAGCCAGGGGTACCAA TGCTGTCCTGCTGGCTTCCGCTTCGCAGCCAGGGGTACCAA < 41bp 0.803565442205099 0.494404112265328 0.15144679 0.06679845 prediction 0.607130884410199 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42430076 chr17:42430078 nonsynonymous SNV 0.228 5 23 hm5C_associated_SNPs_54066 0 0 1 1 42430065 42430089 mRNA hsa-miR-370 GRN miRanda miRanda
4939 chr17 3629698 3629698 1 + A C rs170208 3629694 + 3629674 3629714 41 GCCTCTGGTGCTGTTTCAACCTCCATCCCCACAGGAGGGTG GCCTCTGGTGCTGTTTCAACCTCCCTCCCCACAGGAGGGTG < 41bp 0.802712528409996 0.41976738413584 0.93224335 0.10470548 prediction 0.605425056819993 Functional Loss - HASPIN ENSG00000177602 UTR3 Human protein_coding chr17:3629694 chr17:3629698 . . 0 25 hm5C_associated_SNPs_54198 0 0 1 1 3629685 3629706 mRNA hsa-miR-491-5p GSG2 miRanda miRanda
4940 chr1 46033774 46033774 1 + G T LUAD 46033772 + 46033752 46033792 41 CTAAGGGGCTGGTGCAGGCGCTGGGCCTGTCCAACTTCAAC CTAAGGGGCTGGTGCAGGCGCTTGGCCTGTCCAACTTCAAC < 41bp 0.802473696032357 0.478983941061121 0.061232567 0.03923306 prediction 0.604947392064714 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46033772 chr1:46033774 synonymous SNV . 0 23 hm5C_associated_SNPs_54230 0 0 1 1 46033774 46033794 mRNA hsa-miR-653 AKR1A1 miRanda miRanda
4941 chr5 137684304 137684304 1 + G T rs534246277 137684301 + 137684281 137684321 41 TTTCTGGATCTCCTGCATGTCAGGAGCATCAGTGAGGCTTC TTTCTGGATCTCCTGCATGTCAGTAGCATCAGTGAGGCTTC < 41bp 0.8219835763217 0.519530914451174 0.898073 0.06526145 prediction 0.604905323741053 Functional Loss - FAM53C ENSG00000249971 ncRNA_intronic Human antisense chr5:137684301 chr5:137684304 . . 0 24 hm5C_associated_SNPs_54236 0 0 1 1 137684287 137684309 mRNA hsa-miR-874 FAM53C miRanda miRanda
4942 chr20 2637430 2637430 1 + G T SARC 2637427 + 2637407 2637447 41 CACACACATCCAGAGGTGCCCACGAGTGTATTCGGGGAGAA CACACACATCCAGAGGTGCCCACTAGTGTATTCGGGGAGAA < 41bp 0.877783525258509 0.575587793454474 0.26429912 0.08554271 prediction 0.604391463608069 Functional Loss - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2637427 chr20:2637430 synonymous SNV . 0 24 hm5C_associated_SNPs_54279 0 0 1 1 2637420 2637433 mRNA hsa-miR-326 NOP56 miRanda miRanda
4943 chr1 176760523 176760523 1 + A C SKCM 176760519 + 176760499 176760539 41 CTAAAGAGGGCCTGTGGACCCAGGAGTTTAAGTTGTGTGAG CTAAAGAGGGCCTGTGGACCCAGGCGTTTAAGTTGTGTGAG < 41bp 0.872338281089642 0.570569700034674 0.9152122 0.8619057 prediction 0.603537162109935 Functional Loss - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176760519 chr1:176760523 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_54341 0 0 0 1 176760518 176760540 mRNA hsa-miR-342-3p PAPPA2 miRanda miRanda
4944 chr11 7441832 7441832 1 + G T LUAD 7441829 + 7441809 7441849 41 GAGTGAAATGTTGTCATATCCTCGGAAGCCCATTGCACACT GAGTGAAATGTTGTCATATCCTCTGAAGCCCATTGCACACT < 41bp 0.801578519333635 0.444273180136481 0.2628311 0.18348786 prediction 0.603157038667271 Functional Loss - SYT9 ENSG00000170743 CDS Human protein_coding chr11:7441829 chr11:7441832 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54375 0 0 1 2 7441827 7441852 mRNA hsa-miR-199a-5p SYT9 miRanda miRanda
4945 chr11 7441832 7441832 1 + G T LUAD 7441829 + 7441809 7441849 41 GAGTGAAATGTTGTCATATCCTCGGAAGCCCATTGCACACT GAGTGAAATGTTGTCATATCCTCTGAAGCCCATTGCACACT < 41bp 0.801578519333635 0.444273180136481 0.2628311 0.18348786 prediction 0.603157038667271 Functional Loss - SYT9 ENSG00000170743 CDS Human protein_coding chr11:7441829 chr11:7441832 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54375 0 0 1 2 7441828 7441852 mRNA hsa-miR-199b-5p SYT9 miRanda miRanda
4946 chrX 149832069 149832069 1 + G T UCEC 149832067 + 149832047 149832087 41 TACTACATTAGATGGAACCCCAGGATCAAGCAACAAGTAAG TACTACATTAGATGGAACCCCATGATCAAGCAACAAGTAAG < 41bp 0.800942379902582 0.496446748164495 0.3663858 0.12588891 prediction 0.601884759805164 Functional Loss - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149832067 chrX:149832069 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_54458 0 0 0 1 149832061 149832082 mRNA hsa-miR-218 MTM1 miRanda miRanda
4947 chr19 50387551 50387551 1 + G C BLCA 50387550 + 50387530 50387570 41 GACAGGACCAACAAGTTCTACGAGGGTCCCGAGAACCCGGG GACAGGACCAACAAGTTCTACCAGGGTCCCGAGAACCCGGG < 41bp 0.804373548776079 0.503435138270768 0.2408514 0.19905886 prediction 0.601876821010622 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50387550 chr19:50387551 nonsynonymous SNV 0.986 2 22 hm5C_associated_SNPs_54459 0 0 0 2 50387534 50387557 mRNA hsa-miR-10a TBC1D17 miRanda miRanda
4948 chr19 50387551 50387551 1 + G C BLCA 50387550 + 50387530 50387570 41 GACAGGACCAACAAGTTCTACGAGGGTCCCGAGAACCCGGG GACAGGACCAACAAGTTCTACCAGGGTCCCGAGAACCCGGG < 41bp 0.804373548776079 0.503435138270768 0.2408514 0.19905886 prediction 0.601876821010622 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50387550 chr19:50387551 nonsynonymous SNV 0.986 2 22 hm5C_associated_SNPs_54459 0 0 0 2 50387534 50387557 mRNA hsa-miR-10b TBC1D17 miRanda miRanda
4949 chr1 148932888 148932888 1 + G T HNSC 148932885 + 148932865 148932905 41 GGTGGGAGACGGGTGAGGTACAGGCTCAGTCTGCGGCCAAG GGTGGGAGACGGGTGAGGTACAGTCTCAGTCTGCGGCCAAG < 41bp 0.886809670392722 0.586334668269558 0.7009043 0.20457762 prediction 0.600950004246327 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932885 chr1:148932888 . . 0 24 hm5C_associated_SNPs_54524 0 0 0 1 148932867 148932889 mRNA hsa-miR-486-5p LOC645166 miRanda miRanda
4950 chr4 146560633 146560633 1 + G T BRCA 146560630 + 146560610 146560650 41 CTTGTAGAATCAACTCACAGCAGGAAAAAGGAGTTAGCCCA CTTGTAGAATCAACTCACAGCAGTAAAAAGGAGTTAGCCCA < 41bp 0.874088771963136 0.573995731778645 0.84246695 0.39860386 prediction 0.600186080368981 Functional Loss - MMAA ENSG00000151611 CDS Human protein_coding chr4:146560630 chr4:146560633 nonsynonymous SNV 0.984 2 24 hm5C_associated_SNPs_54569 0 0 0 1 146560612 146560634 mRNA hsa-miR-370 MMAA miRanda miRanda
4951 chr17 31324519 31324519 1 + G T UCEC 31324516 + 31324496 31324536 41 TCTGTGCCATGAAGATAACCCAAGAGCCTCAGGGTCTGGGT TCTGTGCCATGAAGATAACCCAATAGCCTCAGGGTCTGGGT < 41bp 0.884873010152057 0.584856337298857 0.098412216 0.049292237 prediction 0.6000333457064 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31324516 chr17:31324519 stopgain 0.010 0 24 hm5C_associated_SNPs_54578 0 0 0 3 31324509 31324530 mRNA hsa-miR-125b SPACA3 miRanda miRanda
4952 chr17 31324519 31324519 1 + G T UCEC 31324516 + 31324496 31324536 41 TCTGTGCCATGAAGATAACCCAAGAGCCTCAGGGTCTGGGT TCTGTGCCATGAAGATAACCCAATAGCCTCAGGGTCTGGGT < 41bp 0.884873010152057 0.584856337298857 0.098412216 0.049292237 prediction 0.6000333457064 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31324516 chr17:31324519 stopgain 0.010 0 24 hm5C_associated_SNPs_54578 0 0 0 3 31324507 31324530 mRNA hsa-miR-125a-5p SPACA3 miRanda miRanda
4953 chr17 31324519 31324519 1 + G T UCEC 31324516 + 31324496 31324536 41 TCTGTGCCATGAAGATAACCCAAGAGCCTCAGGGTCTGGGT TCTGTGCCATGAAGATAACCCAATAGCCTCAGGGTCTGGGT < 41bp 0.884873010152057 0.584856337298857 0.098412216 0.049292237 prediction 0.6000333457064 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31324516 chr17:31324519 stopgain 0.010 0 24 hm5C_associated_SNPs_54578 0 0 0 3 31324510 31324532 mRNA hsa-miR-504 SPACA3 miRanda miRanda
4954 chr1 161199615 161199615 1 + A T LUAD 161199611 + 161199591 161199631 41 CTGCAGATCTCCTGGAGCAGCGGCATCATGGCAGACAGGCC CTGCAGATCTCCTGGAGCAGCGGCTTCATGGCAGACAGGCC < 41bp 0.799623953171866 0.499531235515981 0.454288 0.47907194 prediction 0.599247906343731 Functional Loss - NR1I3 ENSG00000143257 CDS Human protein_coding chr1:161199611 chr1:161199615 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_54644 0 0 1 1 161199603 161199627 mRNA hsa-miR-346 TOMM40L miRanda miRanda
4955 chr2 176965421 176965421 1 + G T LUSC 176965419 + 176965399 176965439 41 AGCGACCAGCAAGTCAAAATCTGGTTCCAGAACAGGCGTAT AGCGACCAGCAAGTCAAAATCTTGTTCCAGAACAGGCGTAT < 41bp 0.80828247147583 0.508806597523903 0.5242544 0.2980513 prediction 0.598951747903854 Functional Loss - HOXD12 ENSG00000170178 CDS Human protein_coding chr2:176965419 chr2:176965421 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_54668 0 0 0 1 176965412 176965438 mRNA hsa-miR-10b HOXD12 miRanda miRanda
4956 chr21 45937638 45937638 1 + A C rs202122569 45937634 + 45937614 45937654 41 CTGTGGACATCACTCGCCTTCAGAACACTGAGCCCTCCTAC CTGTGGACATCACTCGCCTTCAGACCACTGAGCCCTCCTAC < 41bp 0.799332792037325 0.449290487528513 0.6848522 0.40454453 prediction 0.59866558407465 Functional Loss - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937634 chr21:45937638 . . 0 25 hm5C_associated_SNPs_54684 0 0 1 9 45937637 45937658 mRNA hsa-let-7a C21orf90 miRanda miRanda
4957 chr21 45937638 45937638 1 + A C rs202122569 45937634 + 45937614 45937654 41 CTGTGGACATCACTCGCCTTCAGAACACTGAGCCCTCCTAC CTGTGGACATCACTCGCCTTCAGACCACTGAGCCCTCCTAC < 41bp 0.799332792037325 0.449290487528513 0.6848522 0.40454453 prediction 0.59866558407465 Functional Loss - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937634 chr21:45937638 . . 0 25 hm5C_associated_SNPs_54684 0 0 1 9 45937636 45937658 mRNA hsa-let-7b C21orf90 miRanda miRanda
4958 chr21 45937638 45937638 1 + A C rs202122569 45937634 + 45937614 45937654 41 CTGTGGACATCACTCGCCTTCAGAACACTGAGCCCTCCTAC CTGTGGACATCACTCGCCTTCAGACCACTGAGCCCTCCTAC < 41bp 0.799332792037325 0.449290487528513 0.6848522 0.40454453 prediction 0.59866558407465 Functional Loss - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937634 chr21:45937638 . . 0 25 hm5C_associated_SNPs_54684 0 0 1 9 45937636 45937658 mRNA hsa-let-7c C21orf90 miRanda miRanda
4959 chr21 45937638 45937638 1 + A C rs202122569 45937634 + 45937614 45937654 41 CTGTGGACATCACTCGCCTTCAGAACACTGAGCCCTCCTAC CTGTGGACATCACTCGCCTTCAGACCACTGAGCCCTCCTAC < 41bp 0.799332792037325 0.449290487528513 0.6848522 0.40454453 prediction 0.59866558407465 Functional Loss - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937634 chr21:45937638 . . 0 25 hm5C_associated_SNPs_54684 0 0 1 9 45937637 45937658 mRNA hsa-let-7d C21orf90 miRanda miRanda
4960 chr21 45937638 45937638 1 + A C rs202122569 45937634 + 45937614 45937654 41 CTGTGGACATCACTCGCCTTCAGAACACTGAGCCCTCCTAC CTGTGGACATCACTCGCCTTCAGACCACTGAGCCCTCCTAC < 41bp 0.799332792037325 0.449290487528513 0.6848522 0.40454453 prediction 0.59866558407465 Functional Loss - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937634 chr21:45937638 . . 0 25 hm5C_associated_SNPs_54684 0 0 1 9 45937637 45937658 mRNA hsa-let-7e C21orf90 miRanda miRanda
4961 chr21 45937638 45937638 1 + A C rs202122569 45937634 + 45937614 45937654 41 CTGTGGACATCACTCGCCTTCAGAACACTGAGCCCTCCTAC CTGTGGACATCACTCGCCTTCAGACCACTGAGCCCTCCTAC < 41bp 0.799332792037325 0.449290487528513 0.6848522 0.40454453 prediction 0.59866558407465 Functional Loss - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937634 chr21:45937638 . . 0 25 hm5C_associated_SNPs_54684 0 0 1 9 45937637 45937658 mRNA hsa-let-7f C21orf90 miRanda miRanda
4962 chr21 45937638 45937638 1 + A C rs202122569 45937634 + 45937614 45937654 41 CTGTGGACATCACTCGCCTTCAGAACACTGAGCCCTCCTAC CTGTGGACATCACTCGCCTTCAGACCACTGAGCCCTCCTAC < 41bp 0.799332792037325 0.449290487528513 0.6848522 0.40454453 prediction 0.59866558407465 Functional Loss - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937634 chr21:45937638 . . 0 25 hm5C_associated_SNPs_54684 0 0 1 9 45937625 45937648 mRNA hsa-miR-24 C21orf90 miRanda miRanda
4963 chr21 45937638 45937638 1 + A C rs202122569 45937634 + 45937614 45937654 41 CTGTGGACATCACTCGCCTTCAGAACACTGAGCCCTCCTAC CTGTGGACATCACTCGCCTTCAGACCACTGAGCCCTCCTAC < 41bp 0.799332792037325 0.449290487528513 0.6848522 0.40454453 prediction 0.59866558407465 Functional Loss - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937634 chr21:45937638 . . 0 25 hm5C_associated_SNPs_54684 0 0 1 9 45937637 45937658 mRNA hsa-miR-98 C21orf90 miRanda miRanda
4964 chr21 45937638 45937638 1 + A C rs202122569 45937634 + 45937614 45937654 41 CTGTGGACATCACTCGCCTTCAGAACACTGAGCCCTCCTAC CTGTGGACATCACTCGCCTTCAGACCACTGAGCCCTCCTAC < 41bp 0.799332792037325 0.449290487528513 0.6848522 0.40454453 prediction 0.59866558407465 Functional Loss - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937634 chr21:45937638 . . 0 25 hm5C_associated_SNPs_54684 0 0 1 9 45937632 45937658 mRNA hsa-let-7i C21orf90 miRanda miRanda
4965 chr14 64926620 64926620 1 + A C rs1801340 64926616 + 64926596 64926636 41 ACTAATAGTAGGAGTTTCCCCAGAAGTCATTTTCAGCCTTA ACTAATAGTAGGAGTTTCCCCAGACGTCATTTTCAGCCTTA < 41bp 0.864848636564045 0.565898730158287 0.40183273 0.42018366 prediction 0.597899812811516 Functional Loss - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64926616 chr14:64926620 nonsynonymous SNV 0.128 1 25 hm5C_associated_SNPs_54733 0 0 1 1 64926615 64926636 mRNA hsa-miR-485-5p MTHFD1 miRanda miRanda
4966 chr19 41712447 41712447 1 + A C rs375475224 41712443 + 41712423 41712463 41 CAGGACGGTGCCTCCAGCCTCAACAGTGGGCATGGACAGGG CAGGACGGTGCCTCCAGCCTCAACCGTGGGCATGGACAGGG < 41bp 0.79890106840847 0.430590240888188 0.31445366 0.20257604 prediction 0.59780213681694 Functional Loss - CYP2S1 ENSG00000167600 UTR3 Human protein_coding chr19:41712443 chr19:41712447 . . 0 25 hm5C_associated_SNPs_54743 0 0 0 3 41712441 41712465 mRNA hsa-miR-10a CYP2S1 miRanda miRanda
4967 chr19 41712447 41712447 1 + A C rs375475224 41712443 + 41712423 41712463 41 CAGGACGGTGCCTCCAGCCTCAACAGTGGGCATGGACAGGG CAGGACGGTGCCTCCAGCCTCAACCGTGGGCATGGACAGGG < 41bp 0.79890106840847 0.430590240888188 0.31445366 0.20257604 prediction 0.59780213681694 Functional Loss - CYP2S1 ENSG00000167600 UTR3 Human protein_coding chr19:41712443 chr19:41712447 . . 0 25 hm5C_associated_SNPs_54743 0 0 0 3 41712441 41712465 mRNA hsa-miR-10b CYP2S1 miRanda miRanda
4968 chr19 41712447 41712447 1 + A C rs375475224 41712443 + 41712423 41712463 41 CAGGACGGTGCCTCCAGCCTCAACAGTGGGCATGGACAGGG CAGGACGGTGCCTCCAGCCTCAACCGTGGGCATGGACAGGG < 41bp 0.79890106840847 0.430590240888188 0.31445366 0.20257604 prediction 0.59780213681694 Functional Loss - CYP2S1 ENSG00000167600 UTR3 Human protein_coding chr19:41712443 chr19:41712447 . . 0 25 hm5C_associated_SNPs_54743 0 0 0 3 41712442 41712464 mRNA hsa-miR-339-5p CYP2S1 miRanda miRanda
4969 chr1 32557320 32557320 1 + G C LUAD 32557319 + 32557299 32557339 41 TGCAGCTGAATTGCGACCTCCGCAAGACAAGCCTCTTCAAC TGCAGCTGAATTGCGACCTCCCCAAGACAAGCCTCTTCAAC < 41bp 0.801593525351815 0.502815916295153 0.090032786 0.078823864 prediction 0.597555218113323 Functional Loss - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32557319 chr1:32557320 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_54762 0 0 1 2 32557305 32557327 mRNA hsa-miR-431 TMEM39B miRanda miRanda
4970 chr1 32557320 32557320 1 + G C LUAD 32557319 + 32557299 32557339 41 TGCAGCTGAATTGCGACCTCCGCAAGACAAGCCTCTTCAAC TGCAGCTGAATTGCGACCTCCCCAAGACAAGCCTCTTCAAC < 41bp 0.801593525351815 0.502815916295153 0.090032786 0.078823864 prediction 0.597555218113323 Functional Loss - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32557319 chr1:32557320 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_54762 0 0 1 2 32557318 32557338 mRNA hsa-miR-488 TMEM39B miRanda miRanda
4971 chr16 72133735 72133735 1 + G T LUAD 72133733 + 72133713 72133753 41 TGAGGAGGCGGGAGCAGCACCTGCATAAACAGAAGCAGAAG TGAGGAGGCGGGAGCAGCACCTTCATAAACAGAAGCAGAAG < 41bp 0.816103302444675 0.517703993693107 0.61335397 0.37065718 prediction 0.596798617503137 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72133733 chr16:72133735 synonymous SNV . 0 23 hm5C_associated_SNPs_54816 0 0 1 2 72133735 72133759 mRNA hsa-miR-135a DHX38 miRanda miRanda
4972 chr16 72133735 72133735 1 + G T LUAD 72133733 + 72133713 72133753 41 TGAGGAGGCGGGAGCAGCACCTGCATAAACAGAAGCAGAAG TGAGGAGGCGGGAGCAGCACCTTCATAAACAGAAGCAGAAG < 41bp 0.816103302444675 0.517703993693107 0.61335397 0.37065718 prediction 0.596798617503137 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72133733 chr16:72133735 synonymous SNV . 0 23 hm5C_associated_SNPs_54816 0 0 1 2 72133735 72133759 mRNA hsa-miR-135b DHX38 miRanda miRanda
4973 chr4 158281151 158281151 1 + A C BLCA 158281147 + 158281127 158281167 41 CCGAAGGGGTGGCTAGAGTGCGGAAGTCCAAAGGGAAATAT CCGAAGGGGTGGCTAGAGTGCGGACGTCCAAAGGGAAATAT < 41bp 0.882266645616691 0.583933096908445 0.8620471 0.7944608 prediction 0.596667097416492 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158281147 chr4:158281151 nonsynonymous SNV 0.925 3 25 hm5C_associated_SNPs_54823 0 0 0 2 158281141 158281163 mRNA hsa-miR-204 GRIA2 miRanda miRanda
4974 chr4 158281151 158281151 1 + A C BLCA 158281147 + 158281127 158281167 41 CCGAAGGGGTGGCTAGAGTGCGGAAGTCCAAAGGGAAATAT CCGAAGGGGTGGCTAGAGTGCGGACGTCCAAAGGGAAATAT < 41bp 0.882266645616691 0.583933096908445 0.8620471 0.7944608 prediction 0.596667097416492 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158281147 chr4:158281151 nonsynonymous SNV 0.925 3 25 hm5C_associated_SNPs_54823 0 0 0 2 158281142 158281163 mRNA hsa-miR-211 GRIA2 miRanda miRanda
4975 chr2 58386604 58386604 1 + G T LGG 58386601 + 58386581 58386621 41 ACTCATTTTATGAGCCTCATCAAGATTTTACCAGTCCAGAT ACTCATTTTATGAGCCTCATCAATATTTTACCAGTCCAGAT < 41bp 0.798245800085552 0.464548827643675 0.40409976 0.07018015 prediction 0.596491600171104 Functional Loss - VRK2 ENSG00000028116 CDS Human protein_coding chr2:58386601 chr2:58386604 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_54841 0 0 0 2 58386598 58386620 mRNA hsa-miR-378 VRK2 miRanda miRanda
4976 chr2 58386604 58386604 1 + G T LGG 58386601 + 58386581 58386621 41 ACTCATTTTATGAGCCTCATCAAGATTTTACCAGTCCAGAT ACTCATTTTATGAGCCTCATCAATATTTTACCAGTCCAGAT < 41bp 0.798245800085552 0.464548827643675 0.40409976 0.07018015 prediction 0.596491600171104 Functional Loss - VRK2 ENSG00000028116 CDS Human protein_coding chr2:58386601 chr2:58386604 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_54841 0 0 0 2 58386597 58386620 mRNA hsa-miR-422a VRK2 miRanda miRanda
4977 chr19 44681653 44681653 1 + G T SARC 44681651 + 44681631 44681671 41 CTTCACAACTACAGTCTCATCAGCGAGTTCACACTGGGGAG CTTCACAACTACAGTCTCATCATCGAGTTCACACTGGGGAG < 41bp 0.805704262084707 0.507537104727144 0.30088794 0.16939259 prediction 0.596334314715126 Functional Loss - ZNF226 ENSG00000167380 CDS Human protein_coding chr19:44681651 chr19:44681653 nonsynonymous SNV 0.980 1 23 hm5C_associated_SNPs_54863 0 0 1 1 44681644 44681667 mRNA hsa-miR-125a-3p ZNF226 miRanda miRanda
4978 chr2 74173900 74173900 1 + G T UCEC 74173898 + 74173878 74173918 41 GGATATGATGTACCGGGAGCCAGCACGATGGTCCTACACAT GGATATGATGTACCGGGAGCCATCACGATGGTCCTACACAT < 41bp 0.834076520378461 0.536139822085832 0.26967478 0.102427185 prediction 0.595873396585258 Functional Loss - DGUOK ENSG00000114956 CDS Human protein_coding chr2:74173898 chr2:74173900 nonsynonymous SNV 0.970 1 23 hm5C_associated_SNPs_54894 0 0 1 3 74173900 74173922 mRNA hsa-miR-1 DGUOK miRanda miRanda
4979 chr2 74173900 74173900 1 + G T UCEC 74173898 + 74173878 74173918 41 GGATATGATGTACCGGGAGCCAGCACGATGGTCCTACACAT GGATATGATGTACCGGGAGCCATCACGATGGTCCTACACAT < 41bp 0.834076520378461 0.536139822085832 0.26967478 0.102427185 prediction 0.595873396585258 Functional Loss - DGUOK ENSG00000114956 CDS Human protein_coding chr2:74173898 chr2:74173900 nonsynonymous SNV 0.970 1 23 hm5C_associated_SNPs_54894 0 0 1 3 74173878 74173901 mRNA hsa-miR-149 DGUOK miRanda miRanda
4980 chr2 74173900 74173900 1 + G T UCEC 74173898 + 74173878 74173918 41 GGATATGATGTACCGGGAGCCAGCACGATGGTCCTACACAT GGATATGATGTACCGGGAGCCATCACGATGGTCCTACACAT < 41bp 0.834076520378461 0.536139822085832 0.26967478 0.102427185 prediction 0.595873396585258 Functional Loss - DGUOK ENSG00000114956 CDS Human protein_coding chr2:74173898 chr2:74173900 nonsynonymous SNV 0.970 1 23 hm5C_associated_SNPs_54894 0 0 1 3 74173898 74173922 mRNA hsa-miR-206 DGUOK miRanda miRanda
4981 chr17 31324527 31324527 1 + G T LGG 31324525 + 31324505 31324545 41 TGAAGATAACCCAAGAGCCTCAGGGTCTGGGTTACTGGTAA TGAAGATAACCCAAGAGCCTCATGGTCTGGGTTACTGGTAA < 41bp 0.84209752163074 0.54430813817264 0.90429723 0.19748303 prediction 0.595578766916201 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31324525 chr17:31324527 nonsynonymous SNV 0.139 1 23 hm5C_associated_SNPs_54915 0 0 0 3 31324509 31324530 mRNA hsa-miR-125b SPACA3 miRanda miRanda
4982 chr17 31324527 31324527 1 + G T LGG 31324525 + 31324505 31324545 41 TGAAGATAACCCAAGAGCCTCAGGGTCTGGGTTACTGGTAA TGAAGATAACCCAAGAGCCTCATGGTCTGGGTTACTGGTAA < 41bp 0.84209752163074 0.54430813817264 0.90429723 0.19748303 prediction 0.595578766916201 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31324525 chr17:31324527 nonsynonymous SNV 0.139 1 23 hm5C_associated_SNPs_54915 0 0 0 3 31324507 31324530 mRNA hsa-miR-125a-5p SPACA3 miRanda miRanda
4983 chr17 31324527 31324527 1 + G T LGG 31324525 + 31324505 31324545 41 TGAAGATAACCCAAGAGCCTCAGGGTCTGGGTTACTGGTAA TGAAGATAACCCAAGAGCCTCATGGTCTGGGTTACTGGTAA < 41bp 0.84209752163074 0.54430813817264 0.90429723 0.19748303 prediction 0.595578766916201 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31324525 chr17:31324527 nonsynonymous SNV 0.139 1 23 hm5C_associated_SNPs_54915 0 0 0 3 31324510 31324532 mRNA hsa-miR-504 SPACA3 miRanda miRanda
4984 chr19 56888974 56888974 1 + G T UCEC 56888972 + 56888952 56888992 41 GTGATGCAGTTCACTCTGCACAGGAGAATTCATACTGGTGA GTGATGCAGTTCACTCTGCACATGAGAATTCATACTGGTGA < 41bp 0.797661900225471 0.486960154852327 0.83954954 0.1870293 prediction 0.595323800450942 Functional Loss - ZNF542P ENSG00000240225;ENSG00000267459 ncRNA_exonic Human other chr19:56888972 chr19:56888974 . . 0 23 hm5C_associated_SNPs_54935 0 0 1 1 56888974 56888993 mRNA hsa-miR-27b ZNF542 miRanda miRanda
4985 chr19 53987091 53987091 1 + G T PRAD 53987089 + 53987069 53987109 41 AGTCAGGGATGGCTCTTCCTCAGGTGAGATGATATTTTTGG AGTCAGGGATGGCTCTTCCTCATGTGAGATGATATTTTTGG < 41bp 0.825022443906882 0.527500910298803 0.8863329 0.40799913 prediction 0.595043067216158 Functional Loss - ZNF813 ENSG00000198346 CDS Human protein_coding chr19:53987089 chr19:53987091 nonsynonymous SNV 0.020 3 23 hm5C_associated_SNPs_54953 0 0 0 3 53987073 53987091 mRNA hsa-miR-125b ZNF765 miRanda miRanda
4986 chr19 53987091 53987091 1 + G T PRAD 53987089 + 53987069 53987109 41 AGTCAGGGATGGCTCTTCCTCAGGTGAGATGATATTTTTGG AGTCAGGGATGGCTCTTCCTCATGTGAGATGATATTTTTGG < 41bp 0.825022443906882 0.527500910298803 0.8863329 0.40799913 prediction 0.595043067216158 Functional Loss - ZNF813 ENSG00000198346 CDS Human protein_coding chr19:53987089 chr19:53987091 nonsynonymous SNV 0.020 3 23 hm5C_associated_SNPs_54953 0 0 0 3 53987069 53987091 mRNA hsa-miR-125a-5p ZNF765 miRanda miRanda
4987 chr19 53987091 53987091 1 + G T PRAD 53987089 + 53987069 53987109 41 AGTCAGGGATGGCTCTTCCTCAGGTGAGATGATATTTTTGG AGTCAGGGATGGCTCTTCCTCATGTGAGATGATATTTTTGG < 41bp 0.825022443906882 0.527500910298803 0.8863329 0.40799913 prediction 0.595043067216158 Functional Loss - ZNF813 ENSG00000198346 CDS Human protein_coding chr19:53987089 chr19:53987091 nonsynonymous SNV 0.020 3 23 hm5C_associated_SNPs_54953 0 0 0 3 53987075 53987091 mRNA hsa-miR-504 ZNF765 miRanda miRanda
4988 chr1 238090365 238090365 1 + G T ESCA 238090363 + 238090343 238090383 41 GAGCATGGCATCGTCACCAACTGGGACGACATGGAGAAGAT GAGCATGGCATCGTCACCAACTTGGACGACATGGAGAAGAT < 41bp 0.829629059837108 0.532220685377702 0.381252 0.084536314 prediction 0.594816748918811 Functional Loss - LOC100130331 ENSG00000237250;ENSG00000243781 ncRNA_exonic Human other chr1:238090363 chr1:238090365 . . 0 23 hm5C_associated_SNPs_54970 0 0 0 1 238090355 238090379 mRNA hsa-miR-136 LOC100130331 miRanda miRanda
4989 chr1 205566951 205566951 1 + G T UCEC 205566948 + 205566928 205566968 41 GTGACAGGGGCAGGAGTTGGCGAGATGGTGCTGCAGATGCT GTGACAGGGGCAGGAGTTGGCGATATGGTGCTGCAGATGCT < 41bp 0.880971896469453 0.584456362637767 0.8828784 0.74757755 prediction 0.593031067663372 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205566948 chr1:205566951 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_55126 0 0 0 5 205566939 205566960 mRNA hsa-miR-29a MFSD4 miRanda miRanda
4990 chr1 205566951 205566951 1 + G T UCEC 205566948 + 205566928 205566968 41 GTGACAGGGGCAGGAGTTGGCGAGATGGTGCTGCAGATGCT GTGACAGGGGCAGGAGTTGGCGATATGGTGCTGCAGATGCT < 41bp 0.880971896469453 0.584456362637767 0.8828784 0.74757755 prediction 0.593031067663372 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205566948 chr1:205566951 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_55126 0 0 0 5 205566938 205566960 mRNA hsa-miR-29b MFSD4 miRanda miRanda
4991 chr1 205566951 205566951 1 + G T UCEC 205566948 + 205566928 205566968 41 GTGACAGGGGCAGGAGTTGGCGAGATGGTGCTGCAGATGCT GTGACAGGGGCAGGAGTTGGCGATATGGTGCTGCAGATGCT < 41bp 0.880971896469453 0.584456362637767 0.8828784 0.74757755 prediction 0.593031067663372 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205566948 chr1:205566951 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_55126 0 0 0 5 205566930 205566952 mRNA hsa-miR-150 MFSD4 miRanda miRanda
4992 chr1 205566951 205566951 1 + G T UCEC 205566948 + 205566928 205566968 41 GTGACAGGGGCAGGAGTTGGCGAGATGGTGCTGCAGATGCT GTGACAGGGGCAGGAGTTGGCGATATGGTGCTGCAGATGCT < 41bp 0.880971896469453 0.584456362637767 0.8828784 0.74757755 prediction 0.593031067663372 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205566948 chr1:205566951 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_55126 0 0 0 5 205566939 205566960 mRNA hsa-miR-29c MFSD4 miRanda miRanda
4993 chr1 205566951 205566951 1 + G T UCEC 205566948 + 205566928 205566968 41 GTGACAGGGGCAGGAGTTGGCGAGATGGTGCTGCAGATGCT GTGACAGGGGCAGGAGTTGGCGATATGGTGCTGCAGATGCT < 41bp 0.880971896469453 0.584456362637767 0.8828784 0.74757755 prediction 0.593031067663372 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205566948 chr1:205566951 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_55126 0 0 0 5 205566950 205566971 mRNA hsa-miR-338-3p MFSD4 miRanda miRanda
4994 chrX 115591970 115591970 1 + A C rs12720092 115591966 + 115591946 115591986 41 GCTGGTCTTGAACTCCCGACCTCAAGTGATCTGTCTACCTC GCTGGTCTTGAACTCCCGACCTCACGTGATCTGTCTACCTC < 41bp 0.864702198742674 0.568514624589005 0.07655725 0.041799396 prediction 0.592375148307338 Functional Loss - SLC6A14 ENSG00000087916 UTR3 Human other chrX:115591966 chrX:115591970 . . 0 25 hm5C_associated_SNPs_55195 0 0 0 10 115591964 115591987 mRNA hsa-let-7a SLC6A14 miRanda miRanda
4995 chrX 115591970 115591970 1 + A C rs12720092 115591966 + 115591946 115591986 41 GCTGGTCTTGAACTCCCGACCTCAAGTGATCTGTCTACCTC GCTGGTCTTGAACTCCCGACCTCACGTGATCTGTCTACCTC < 41bp 0.864702198742674 0.568514624589005 0.07655725 0.041799396 prediction 0.592375148307338 Functional Loss - SLC6A14 ENSG00000087916 UTR3 Human other chrX:115591966 chrX:115591970 . . 0 25 hm5C_associated_SNPs_55195 0 0 0 10 115591965 115591987 mRNA hsa-let-7b SLC6A14 miRanda miRanda
4996 chrX 115591970 115591970 1 + A C rs12720092 115591966 + 115591946 115591986 41 GCTGGTCTTGAACTCCCGACCTCAAGTGATCTGTCTACCTC GCTGGTCTTGAACTCCCGACCTCACGTGATCTGTCTACCTC < 41bp 0.864702198742674 0.568514624589005 0.07655725 0.041799396 prediction 0.592375148307338 Functional Loss - SLC6A14 ENSG00000087916 UTR3 Human other chrX:115591966 chrX:115591970 . . 0 25 hm5C_associated_SNPs_55195 0 0 0 10 115591965 115591987 mRNA hsa-let-7c SLC6A14 miRanda miRanda
4997 chrX 115591970 115591970 1 + A C rs12720092 115591966 + 115591946 115591986 41 GCTGGTCTTGAACTCCCGACCTCAAGTGATCTGTCTACCTC GCTGGTCTTGAACTCCCGACCTCACGTGATCTGTCTACCTC < 41bp 0.864702198742674 0.568514624589005 0.07655725 0.041799396 prediction 0.592375148307338 Functional Loss - SLC6A14 ENSG00000087916 UTR3 Human other chrX:115591966 chrX:115591970 . . 0 25 hm5C_associated_SNPs_55195 0 0 0 10 115591964 115591987 mRNA hsa-let-7d SLC6A14 miRanda miRanda
4998 chrX 115591970 115591970 1 + A C rs12720092 115591966 + 115591946 115591986 41 GCTGGTCTTGAACTCCCGACCTCAAGTGATCTGTCTACCTC GCTGGTCTTGAACTCCCGACCTCACGTGATCTGTCTACCTC < 41bp 0.864702198742674 0.568514624589005 0.07655725 0.041799396 prediction 0.592375148307338 Functional Loss - SLC6A14 ENSG00000087916 UTR3 Human other chrX:115591966 chrX:115591970 . . 0 25 hm5C_associated_SNPs_55195 0 0 0 10 115591964 115591987 mRNA hsa-let-7e SLC6A14 miRanda miRanda
4999 chrX 115591970 115591970 1 + A C rs12720092 115591966 + 115591946 115591986 41 GCTGGTCTTGAACTCCCGACCTCAAGTGATCTGTCTACCTC GCTGGTCTTGAACTCCCGACCTCACGTGATCTGTCTACCTC < 41bp 0.864702198742674 0.568514624589005 0.07655725 0.041799396 prediction 0.592375148307338 Functional Loss - SLC6A14 ENSG00000087916 UTR3 Human other chrX:115591966 chrX:115591970 . . 0 25 hm5C_associated_SNPs_55195 0 0 0 10 115591964 115591987 mRNA hsa-let-7f SLC6A14 miRanda miRanda
5000 chrX 115591970 115591970 1 + A C rs12720092 115591966 + 115591946 115591986 41 GCTGGTCTTGAACTCCCGACCTCAAGTGATCTGTCTACCTC GCTGGTCTTGAACTCCCGACCTCACGTGATCTGTCTACCTC < 41bp 0.864702198742674 0.568514624589005 0.07655725 0.041799396 prediction 0.592375148307338 Functional Loss - SLC6A14 ENSG00000087916 UTR3 Human other chrX:115591966 chrX:115591970 . . 0 25 hm5C_associated_SNPs_55195 0 0 0 10 115591966 115591987 mRNA hsa-miR-98 SLC6A14 miRanda miRanda
5001 chrX 115591970 115591970 1 + A C rs12720092 115591966 + 115591946 115591986 41 GCTGGTCTTGAACTCCCGACCTCAAGTGATCTGTCTACCTC GCTGGTCTTGAACTCCCGACCTCACGTGATCTGTCTACCTC < 41bp 0.864702198742674 0.568514624589005 0.07655725 0.041799396 prediction 0.592375148307338 Functional Loss - SLC6A14 ENSG00000087916 UTR3 Human other chrX:115591966 chrX:115591970 . . 0 25 hm5C_associated_SNPs_55195 0 0 0 10 115591965 115591987 mRNA hsa-let-7g SLC6A14 miRanda miRanda
5002 chrX 115591970 115591970 1 + A C rs12720092 115591966 + 115591946 115591986 41 GCTGGTCTTGAACTCCCGACCTCAAGTGATCTGTCTACCTC GCTGGTCTTGAACTCCCGACCTCACGTGATCTGTCTACCTC < 41bp 0.864702198742674 0.568514624589005 0.07655725 0.041799396 prediction 0.592375148307338 Functional Loss - SLC6A14 ENSG00000087916 UTR3 Human other chrX:115591966 chrX:115591970 . . 0 25 hm5C_associated_SNPs_55195 0 0 0 10 115591965 115591987 mRNA hsa-let-7i SLC6A14 miRanda miRanda
5003 chrX 115591970 115591970 1 + A C rs12720092 115591966 + 115591946 115591986 41 GCTGGTCTTGAACTCCCGACCTCAAGTGATCTGTCTACCTC GCTGGTCTTGAACTCCCGACCTCACGTGATCTGTCTACCTC < 41bp 0.864702198742674 0.568514624589005 0.07655725 0.041799396 prediction 0.592375148307338 Functional Loss - SLC6A14 ENSG00000087916 UTR3 Human other chrX:115591966 chrX:115591970 . . 0 25 hm5C_associated_SNPs_55195 0 0 0 10 115591965 115591985 mRNA hsa-miR-379 SLC6A14 miRanda miRanda
5004 chr17 37815776 37815776 1 + G T LUAD 37815774 + 37815754 37815794 41 TGGTGGACCAGATCTTGGCCCAGGAAGAGAACTGGAAGTTT TGGTGGACCAGATCTTGGCCCATGAAGAGAACTGGAAGTTT < 41bp 0.795946837634586 0.473243787349356 0.16987467 0.07682094 prediction 0.591893675269173 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37815774 chr17:37815776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_55236 0 0 1 1 37815766 37815790 mRNA hsa-miR-145 STARD3 miRanda miRanda
5005 chr4 159140489 159140489 1 + A C UCEC 159140485 + 159140465 159140505 41 TGGCTGGTTTGGATTGGATGCAGAAGAAGTATCAAATCCGC TGGCTGGTTTGGATTGGATGCAGACGAAGTATCAAATCCGC < 41bp 0.795767111386201 0.410732099189552 0.41175252 0.32306218 prediction 0.591534222772401 Functional Loss - TMEM144 ENSG00000164124 CDS Human protein_coding chr4:159140485 chr4:159140489 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_55265 0 0 1 2 159140485 159140510 mRNA hsa-miR-503 TMEM144 miRanda miRanda
5006 chr4 159140489 159140489 1 + A C UCEC 159140485 + 159140465 159140505 41 TGGCTGGTTTGGATTGGATGCAGAAGAAGTATCAAATCCGC TGGCTGGTTTGGATTGGATGCAGACGAAGTATCAAATCCGC < 41bp 0.795767111386201 0.410732099189552 0.41175252 0.32306218 prediction 0.591534222772401 Functional Loss - TMEM144 ENSG00000164124 CDS Human protein_coding chr4:159140485 chr4:159140489 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_55265 0 0 1 2 159140469 159140490 mRNA hsa-miR-544 TMEM144 miRanda miRanda
5007 chr16 50745497 50745497 1 + G T LUSC 50745494 + 50745474 50745514 41 GCAGACTGGCTCTGTGGGGCCTGGGCATGTGCTGCTACGTG GCAGACTGGCTCTGTGGGGCCTGTGCATGTGCTGCTACGTG < 41bp 0.886828209721459 0.591102416975334 0.2128106 0.18323103 prediction 0.59145158549225 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50745494 chr16:50745497 nonsynonymous SNV 0.969 4 24 hm5C_associated_SNPs_55272 0 0 0 6 50745489 50745510 mRNA hsa-miR-15a NOD2 miRanda miRanda
5008 chr16 50745497 50745497 1 + G T LUSC 50745494 + 50745474 50745514 41 GCAGACTGGCTCTGTGGGGCCTGGGCATGTGCTGCTACGTG GCAGACTGGCTCTGTGGGGCCTGTGCATGTGCTGCTACGTG < 41bp 0.886828209721459 0.591102416975334 0.2128106 0.18323103 prediction 0.59145158549225 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50745494 chr16:50745497 nonsynonymous SNV 0.969 4 24 hm5C_associated_SNPs_55272 0 0 0 6 50745489 50745510 mRNA hsa-miR-16 NOD2 miRanda miRanda
5009 chr16 50745497 50745497 1 + G T LUSC 50745494 + 50745474 50745514 41 GCAGACTGGCTCTGTGGGGCCTGGGCATGTGCTGCTACGTG GCAGACTGGCTCTGTGGGGCCTGTGCATGTGCTGCTACGTG < 41bp 0.886828209721459 0.591102416975334 0.2128106 0.18323103 prediction 0.59145158549225 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50745494 chr16:50745497 nonsynonymous SNV 0.969 4 24 hm5C_associated_SNPs_55272 0 0 0 6 50745489 50745510 mRNA hsa-miR-15b NOD2 miRanda miRanda
5010 chr16 50745497 50745497 1 + G T LUSC 50745494 + 50745474 50745514 41 GCAGACTGGCTCTGTGGGGCCTGGGCATGTGCTGCTACGTG GCAGACTGGCTCTGTGGGGCCTGTGCATGTGCTGCTACGTG < 41bp 0.886828209721459 0.591102416975334 0.2128106 0.18323103 prediction 0.59145158549225 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50745494 chr16:50745497 nonsynonymous SNV 0.969 4 24 hm5C_associated_SNPs_55272 0 0 0 6 50745490 50745510 mRNA hsa-miR-195 NOD2 miRanda miRanda
5011 chr16 50745497 50745497 1 + G T LUSC 50745494 + 50745474 50745514 41 GCAGACTGGCTCTGTGGGGCCTGGGCATGTGCTGCTACGTG GCAGACTGGCTCTGTGGGGCCTGTGCATGTGCTGCTACGTG < 41bp 0.886828209721459 0.591102416975334 0.2128106 0.18323103 prediction 0.59145158549225 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50745494 chr16:50745497 nonsynonymous SNV 0.969 4 24 hm5C_associated_SNPs_55272 0 0 0 6 50745492 50745510 mRNA hsa-miR-424 NOD2 miRanda miRanda
5012 chr16 50745497 50745497 1 + G T LUSC 50745494 + 50745474 50745514 41 GCAGACTGGCTCTGTGGGGCCTGGGCATGTGCTGCTACGTG GCAGACTGGCTCTGTGGGGCCTGTGCATGTGCTGCTACGTG < 41bp 0.886828209721459 0.591102416975334 0.2128106 0.18323103 prediction 0.59145158549225 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50745494 chr16:50745497 nonsynonymous SNV 0.969 4 24 hm5C_associated_SNPs_55272 0 0 0 6 50745491 50745510 mRNA hsa-miR-497 NOD2 miRanda miRanda
5013 chr1 151743735 151743735 1 + A C rs146266963 151743731 + 151743711 151743751 41 CGCTTTGAGGGGCTGGAAGCCTTGACACATGGAATCAGGGG CGCTTTGAGGGGCTGGAAGCCTTGCCACATGGAATCAGGGG < 41bp 0.795316800332224 0.41214076290125 0.11487836 0.040882826 prediction 0.590633600664448 Functional Loss - OAZ3 ENSG00000143450 CDS Human protein_coding chr1:151743731 chr1:151743735 stoploss 0.232 0 25 hm5C_associated_SNPs_55330 0 0 0 2 151743720 151743743 mRNA hsa-miR-199a-5p OAZ3 miRanda miRanda
5014 chr1 151743735 151743735 1 + A C rs146266963 151743731 + 151743711 151743751 41 CGCTTTGAGGGGCTGGAAGCCTTGACACATGGAATCAGGGG CGCTTTGAGGGGCTGGAAGCCTTGCCACATGGAATCAGGGG < 41bp 0.795316800332224 0.41214076290125 0.11487836 0.040882826 prediction 0.590633600664448 Functional Loss - OAZ3 ENSG00000143450 CDS Human protein_coding chr1:151743731 chr1:151743735 stoploss 0.232 0 25 hm5C_associated_SNPs_55330 0 0 0 2 151743720 151743743 mRNA hsa-miR-199b-5p OAZ3 miRanda miRanda
5015 chr19 36206043 36206043 1 + G T UCEC 36206040 + 36206020 36206060 41 GTTGCACAAGCACTCGCCACCAAGAGGCAGACCCGAGATGG GTTGCACAAGCACTCGCCACCAATAGGCAGACCCGAGATGG < 41bp 0.884736851783378 0.589468977057713 0.49708882 0.018444091 prediction 0.590535749451331 Functional Loss - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36206040 chr19:36206043 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_55338 0 0 0 1 36206031 36206052 mRNA hsa-miR-346 ZBTB32 miRanda miRanda
5016 chr14 76549820 76549820 1 + G T BLCA 76549818 + 76549798 76549838 41 CAGGATGATGTCGGCTGGGACTGGGACCATCTGTTCACTGA CAGGATGATGTCGGCTGGGACTTGGACCATCTGTTCACTGA < 41bp 0.839084656042268 0.543910420866901 0.2914833 0.08954498 prediction 0.590348470350734 Functional Loss - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76549818 chr14:76549820 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55360 0 0 1 1 76549818 76549838 mRNA hsa-miR-873 C14orf179 miRanda miRanda
5017 chr3 100170629 100170629 1 + G T UCEC 100170626 + 100170606 100170646 41 GAAGGCATTCTCATGAGGACCAAGAATTTCGATGCCGTAGC GAAGGCATTCTCATGAGGACCAATAATTTCGATGCCGTAGC < 41bp 0.79513255758775 0.416176873607414 0.08009541 0.03284949 prediction 0.5902651151755 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100170626 chr3:100170629 stopgain 0.792 0 24 hm5C_associated_SNPs_55367 0 0 0 2 100170608 100170629 mRNA hsa-miR-133a LNP1 miRanda miRanda
5018 chr3 100170629 100170629 1 + G T UCEC 100170626 + 100170606 100170646 41 GAAGGCATTCTCATGAGGACCAAGAATTTCGATGCCGTAGC GAAGGCATTCTCATGAGGACCAATAATTTCGATGCCGTAGC < 41bp 0.79513255758775 0.416176873607414 0.08009541 0.03284949 prediction 0.5902651151755 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100170626 chr3:100170629 stopgain 0.792 0 24 hm5C_associated_SNPs_55367 0 0 0 2 100170608 100170629 mRNA hsa-miR-133b LNP1 miRanda miRanda
5019 chr9 107535282 107535282 1 + G T LUSC 107535280 + 107535260 107535300 41 TATGAAATGTTTTTCCAGTTCGGGAAAGTGTCAACTACCTA TATGAAATGTTTTTCCAGTTCGTGAAAGTGTCAACTACCTA < 41bp 0.814652228941444 0.519638869904628 0.39975277 0.12296134 prediction 0.590026718073632 Functional Loss - NIPSNAP3B ENSG00000165028 CDS Human protein_coding chr9:107535280 chr9:107535282 synonymous SNV . 0 23 hm5C_associated_SNPs_55387 0 0 0 2 107535278 107535300 mRNA hsa-miR-196a NIPSNAP3B miRanda miRanda
5020 chr9 107535282 107535282 1 + G T LUSC 107535280 + 107535260 107535300 41 TATGAAATGTTTTTCCAGTTCGGGAAAGTGTCAACTACCTA TATGAAATGTTTTTCCAGTTCGTGAAAGTGTCAACTACCTA < 41bp 0.814652228941444 0.519638869904628 0.39975277 0.12296134 prediction 0.590026718073632 Functional Loss - NIPSNAP3B ENSG00000165028 CDS Human protein_coding chr9:107535280 chr9:107535282 synonymous SNV . 0 23 hm5C_associated_SNPs_55387 0 0 0 2 107535279 107535300 mRNA hsa-miR-196b NIPSNAP3B miRanda miRanda
5021 chr4 1305911 1305911 1 + G T BLCA 1305908 + 1305888 1305928 41 TGGACTCCGTGGTCAGCCTGCTGGACGGCGTGGTGGAGAAG TGGACTCCGTGGTCAGCCTGCTGTACGGCGTGGTGGAGAAG < 41bp 0.874969574403366 0.580036144797031 0.37692127 0.18442243 prediction 0.58986685921267 Functional Loss - MAEA ENSG00000090316 CDS Human protein_coding chr4:1305908 chr4:1305911 nonsynonymous SNV 0.910 4 24 hm5C_associated_SNPs_55403 0 0 1 1 1305891 1305911 mRNA hsa-miR-214 MAEA miRanda miRanda
5022 chr2 208432219 208432219 1 + G T UCEC 208432217 + 208432197 208432237 41 TTGCAGAAAGTGAAGATTCACAGGAGTCAGTGGATAGTGTA TTGCAGAAAGTGAAGATTCACATGAGTCAGTGGATAGTGTA < 41bp 0.814745835909461 0.519837415175506 0.86728776 0.13922885 prediction 0.58981684146791 Functional Loss - CREB1 ENSG00000118260 CDS Human protein_coding chr2:208432217 chr2:208432219 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_55411 0 0 1 2 208432201 208432224 mRNA hsa-miR-10a CREB1 miRanda miRanda
5023 chr2 208432219 208432219 1 + G T UCEC 208432217 + 208432197 208432237 41 TTGCAGAAAGTGAAGATTCACAGGAGTCAGTGGATAGTGTA TTGCAGAAAGTGAAGATTCACATGAGTCAGTGGATAGTGTA < 41bp 0.814745835909461 0.519837415175506 0.86728776 0.13922885 prediction 0.58981684146791 Functional Loss - CREB1 ENSG00000118260 CDS Human protein_coding chr2:208432217 chr2:208432219 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_55411 0 0 1 2 208432200 208432225 mRNA hsa-miR-504 CREB1 miRanda miRanda
5024 chr3 89259054 89259054 1 + G T LUSC 89259051 + 89259031 89259071 41 GATGAACATTACACACCCATCAGGACTTACCAGGTGTGCAA GATGAACATTACACACCCATCAGTACTTACCAGGTGTGCAA < 41bp 0.794845952078977 0.456751019125852 0.41471845 0.057287216 prediction 0.589691904157954 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89259051 chr3:89259054 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55421 0 0 0 6 89259051 89259073 mRNA hsa-miR-25 EPHA3 miRanda miRanda
5025 chr3 89259054 89259054 1 + G T LUSC 89259051 + 89259031 89259071 41 GATGAACATTACACACCCATCAGGACTTACCAGGTGTGCAA GATGAACATTACACACCCATCAGTACTTACCAGGTGTGCAA < 41bp 0.794845952078977 0.456751019125852 0.41471845 0.057287216 prediction 0.589691904157954 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89259051 chr3:89259054 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55421 0 0 0 6 89259051 89259073 mRNA hsa-miR-32 EPHA3 miRanda miRanda
5026 chr3 89259054 89259054 1 + G T LUSC 89259051 + 89259031 89259071 41 GATGAACATTACACACCCATCAGGACTTACCAGGTGTGCAA GATGAACATTACACACCCATCAGTACTTACCAGGTGTGCAA < 41bp 0.794845952078977 0.456751019125852 0.41471845 0.057287216 prediction 0.589691904157954 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89259051 chr3:89259054 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55421 0 0 0 6 89259050 89259073 mRNA hsa-miR-92a EPHA3 miRanda miRanda
5027 chr3 89259054 89259054 1 + G T LUSC 89259051 + 89259031 89259071 41 GATGAACATTACACACCCATCAGGACTTACCAGGTGTGCAA GATGAACATTACACACCCATCAGTACTTACCAGGTGTGCAA < 41bp 0.794845952078977 0.456751019125852 0.41471845 0.057287216 prediction 0.589691904157954 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89259051 chr3:89259054 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55421 0 0 0 6 89259046 89259073 mRNA hsa-miR-363 EPHA3 miRanda miRanda
5028 chr3 89259054 89259054 1 + G T LUSC 89259051 + 89259031 89259071 41 GATGAACATTACACACCCATCAGGACTTACCAGGTGTGCAA GATGAACATTACACACCCATCAGTACTTACCAGGTGTGCAA < 41bp 0.794845952078977 0.456751019125852 0.41471845 0.057287216 prediction 0.589691904157954 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89259051 chr3:89259054 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55421 0 0 0 6 89259051 89259073 mRNA hsa-miR-367 EPHA3 miRanda miRanda
5029 chr3 89259054 89259054 1 + G T LUSC 89259051 + 89259031 89259071 41 GATGAACATTACACACCCATCAGGACTTACCAGGTGTGCAA GATGAACATTACACACCCATCAGTACTTACCAGGTGTGCAA < 41bp 0.794845952078977 0.456751019125852 0.41471845 0.057287216 prediction 0.589691904157954 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89259051 chr3:89259054 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55421 0 0 0 6 89259052 89259073 mRNA hsa-miR-92b EPHA3 miRanda miRanda
5030 chr10 104495661 104495661 1 + G T UCEC 104495659 + 104495639 104495679 41 TGGCGTGTGGGCTTTTCCCACAGAAATGGTATCTGCTGTTC TGGCGTGTGGGCTTTTCCCACATAAATGGTATCTGCTGTTC < 41bp 0.829608356144579 0.534809565781662 0.46361652 0.1771999 prediction 0.589597580725833 Functional Loss - SFXN2 ENSG00000156398 CDS Human protein_coding chr10:104495659 chr10:104495661 nonsynonymous SNV 0.972 4 23 hm5C_associated_SNPs_55431 0 0 1 2 104495649 104495666 mRNA hsa-miR-23a SFXN2 miRanda miRanda
5031 chr10 104495661 104495661 1 + G T UCEC 104495659 + 104495639 104495679 41 TGGCGTGTGGGCTTTTCCCACAGAAATGGTATCTGCTGTTC TGGCGTGTGGGCTTTTCCCACATAAATGGTATCTGCTGTTC < 41bp 0.829608356144579 0.534809565781662 0.46361652 0.1771999 prediction 0.589597580725833 Functional Loss - SFXN2 ENSG00000156398 CDS Human protein_coding chr10:104495659 chr10:104495661 nonsynonymous SNV 0.972 4 23 hm5C_associated_SNPs_55431 0 0 1 2 104495649 104495666 mRNA hsa-miR-23b SFXN2 miRanda miRanda
5032 chr12 6562732 6562732 1 + G T UCEC 6562730 + 6562710 6562750 41 GACAGAGACCACTGTTAAGACAGCAGCTTGGTTCATGGCCA GACAGAGACCACTGTTAAGACATCAGCTTGGTTCATGGCCA < 41bp 0.794779661874261 0.483254503481207 0.25654024 0.24868956 prediction 0.589559323748521 Functional Loss - TAPBPL ENSG00000139192 CDS Human protein_coding chr12:6562730 chr12:6562732 nonsynonymous SNV 0.007 0 23 hm5C_associated_SNPs_55433 0 0 0 1 6562716 6562739 mRNA hsa-miR-520d-3p TAPBPL miRanda miRanda
5033 chr11 10521649 10521649 1 + G T SARC 10521647 + 10521627 10521667 41 GCCCAGGTGACGGGGTTTGACAGCGTGGATGATGAGTCCAA GCCCAGGTGACGGGGTTTGACATCGTGGATGATGAGTCCAA < 41bp 0.845764250959972 0.551119865614615 0.8654013 0.40062267 prediction 0.589288770690715 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10521647 chr11:10521649 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_55452 0 0 1 1 10521637 10521659 mRNA hsa-miR-197 AMPD3 miRanda miRanda
5034 chr15 99828050 99828050 1 + G T OV 99828048 + 99828028 99828068 41 CTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCC CTCTTGTAAAACTCCAATGTCTTGATCTTAGTGACAATGCC < 41bp 0.794405858422665 0.490417631293003 0.17508152 0.06546965 prediction 0.588811716845329 Functional Loss - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99828048 chr15:99828050 synonymous SNV . 0 23 hm5C_associated_SNPs_55497 0 0 1 3 99828049 99828069 mRNA hsa-miR-33a LRRC28 miRanda miRanda
5035 chr15 99828050 99828050 1 + G T OV 99828048 + 99828028 99828068 41 CTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCC CTCTTGTAAAACTCCAATGTCTTGATCTTAGTGACAATGCC < 41bp 0.794405858422665 0.490417631293003 0.17508152 0.06546965 prediction 0.588811716845329 Functional Loss - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99828048 chr15:99828050 synonymous SNV . 0 23 hm5C_associated_SNPs_55497 0 0 1 3 99828046 99828067 mRNA hsa-miR-219-5p LRRC28 miRanda miRanda
5036 chr15 99828050 99828050 1 + G T OV 99828048 + 99828028 99828068 41 CTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCC CTCTTGTAAAACTCCAATGTCTTGATCTTAGTGACAATGCC < 41bp 0.794405858422665 0.490417631293003 0.17508152 0.06546965 prediction 0.588811716845329 Functional Loss - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99828048 chr15:99828050 synonymous SNV . 0 23 hm5C_associated_SNPs_55497 0 0 1 3 99828050 99828069 mRNA hsa-miR-33b LRRC28 miRanda miRanda
5037 chr16 72130817 72130817 1 + G T LUAD 72130815 + 72130795 72130835 41 GGCAGAGAGAGCGGGAGCGGCGGGAACATGGTGTCTATGCC GGCAGAGAGAGCGGGAGCGGCGTGAACATGGTGTCTATGCC < 41bp 0.834108359636116 0.539911019087744 0.8846322 0.45779523 prediction 0.588394681096746 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72130815 chr16:72130817 synonymous SNV . 0 23 hm5C_associated_SNPs_55533 0 0 1 1 72130811 72130833 mRNA hsa-miR-425 DHX38 miRanda miRanda
5038 chr1 46034841 46034841 1 + A C rs146516593 46034837 + 46034817 46034857 41 GTTTGACTTCACCTTTAGCCCAGAAGAGATGAAGCAGCTAA GTTTGACTTCACCTTTAGCCCAGACGAGATGAAGCAGCTAA < 41bp 0.793995059838862 0.405827170549038 0.24969059 0.18167606 prediction 0.587990119677724 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46034837 chr1:46034841 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_55570 0 0 1 1 46034835 46034856 mRNA hsa-miR-22 AKR1A1 miRanda miRanda
5039 chr16 50756539 50756539 1 + G T STAD 50756536 + 50756516 50756556 41 TCTTTTGGCCTTTTCAGATTCTGGGGCAACAGAGTGGGTGA TCTTTTGGCCTTTTCAGATTCTGTGGCAACAGAGTGGGTGA < 41bp 0.876260082252273 0.582405921526892 0.9017616 0.55420977 prediction 0.587708321450763 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50756536 chr16:50756539 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_55583 0 0 0 1 50756535 50756557 mRNA hsa-miR-197 NOD2 miRanda miRanda
5040 chr7 151046260 151046260 1 + A T PRAD 151046256 + 151046236 151046276 41 CAAGGCAATTGAGCGTGGAACAGGAAATGACAATTATAGAA CAAGGCAATTGAGCGTGGAACAGGTAATGACAATTATAGAA < 41bp 0.795754401311959 0.502080452309255 0.36721462 0.79466844 prediction 0.587347898005409 Functional Loss - NUB1 ENSG00000013374 CDS Human protein_coding chr7:151046256 chr7:151046260 synonymous SNV . 0 25 hm5C_associated_SNPs_55612 0 0 1 1 151046251 151046271 mRNA hsa-miR-219-5p NUB1 miRanda miRanda
5041 chr2 202131427 202131427 1 + A C COAD 202131423 + 202131403 202131443 41 TGCTCTTCCGAATTAATAGACTGGATTTGCTGATTACCTAC TGCTCTTCCGAATTAATAGACTGGCTTTGCTGATTACCTAC < 41bp 0.793635727654493 0.453995114589859 0.5015849 0.28242046 prediction 0.587271455308985 Functional Loss - CASP8 ENSG00000064012 CDS Human protein_coding chr2:202131423 chr2:202131427 nonsynonymous SNV 0.057 4 25 hm5C_associated_SNPs_55617 0 0 1 1 202131419 202131440 mRNA hsa-miR-194 CASP8 miRanda miRanda
5042 chr6 40347037 40347037 1 + G T UCEC 40347035 + 40347015 40347055 41 TTATAGGAACGGTCACTGCGCAGGATCAAGCTACAATGAAG TTATAGGAACGGTCACTGCGCATGATCAAGCTACAATGAAG < 41bp 0.811036435816018 0.517987424295365 0.7661543 0.14825493 prediction 0.586098023041307 Functional Loss - TDRG1 ENSG00000204091 ncRNA_exonic Human antisense chr6:40347035 chr6:40347037 . . 0 23 hm5C_associated_SNPs_55708 0 0 0 1 40347029 40347050 mRNA hsa-miR-218 TDRG1 miRanda miRanda
5043 chrX 37651258 37651258 1 + G T UCEC 37651255 + 37651235 37651275 41 CAACAAGAGTTCGAAGACAACTGGACAGGAATCTCACCTTT CAACAAGAGTTCGAAGACAACTGTACAGGAATCTCACCTTT < 41bp 0.880910566144169 0.587929871785692 0.37555155 0.18490002 prediction 0.585961388716955 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37651255 chrX:37651258 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_55723 0 0 0 4 37651235 37651259 mRNA hsa-miR-199a-5p CYBB miRanda miRanda
5044 chrX 37651258 37651258 1 + G T UCEC 37651255 + 37651235 37651275 41 CAACAAGAGTTCGAAGACAACTGGACAGGAATCTCACCTTT CAACAAGAGTTCGAAGACAACTGTACAGGAATCTCACCTTT < 41bp 0.880910566144169 0.587929871785692 0.37555155 0.18490002 prediction 0.585961388716955 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37651255 chrX:37651258 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_55723 0 0 0 4 37651235 37651259 mRNA hsa-miR-199b-5p CYBB miRanda miRanda
5045 chrX 37651258 37651258 1 + G T UCEC 37651255 + 37651235 37651275 41 CAACAAGAGTTCGAAGACAACTGGACAGGAATCTCACCTTT CAACAAGAGTTCGAAGACAACTGTACAGGAATCTCACCTTT < 41bp 0.880910566144169 0.587929871785692 0.37555155 0.18490002 prediction 0.585961388716955 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37651255 chrX:37651258 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_55723 0 0 0 4 37651238 37651260 mRNA hsa-miR-145 CYBB miRanda miRanda
5046 chrX 37651258 37651258 1 + G T UCEC 37651255 + 37651235 37651275 41 CAACAAGAGTTCGAAGACAACTGGACAGGAATCTCACCTTT CAACAAGAGTTCGAAGACAACTGTACAGGAATCTCACCTTT < 41bp 0.880910566144169 0.587929871785692 0.37555155 0.18490002 prediction 0.585961388716955 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37651255 chrX:37651258 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_55723 0 0 0 4 37651257 37651278 mRNA hsa-miR-488 CYBB miRanda miRanda
5047 chr16 80577247 80577247 1 + A C STAD 80577243 + 80577223 80577263 41 TGGAACTATGGTTGTAAATGCAGAAGGTAAATATATCACAG TGGAACTATGGTTGTAAATGCAGACGGTAAATATATCACAG < 41bp 0.792789632919573 0.424823432806727 0.20256442 0.28088906 prediction 0.585579265839145 Functional Loss - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80577243 chr16:80577247 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_55748 0 0 0 3 80577226 80577247 mRNA hsa-miR-217 DYNLRB2 miRanda miRanda
5048 chr16 80577247 80577247 1 + A C STAD 80577243 + 80577223 80577263 41 TGGAACTATGGTTGTAAATGCAGAAGGTAAATATATCACAG TGGAACTATGGTTGTAAATGCAGACGGTAAATATATCACAG < 41bp 0.792789632919573 0.424823432806727 0.20256442 0.28088906 prediction 0.585579265839145 Functional Loss - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80577243 chr16:80577247 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_55748 0 0 0 3 80577227 80577248 mRNA hsa-miR-544 DYNLRB2 miRanda miRanda
5049 chr16 80577247 80577247 1 + A C STAD 80577243 + 80577223 80577263 41 TGGAACTATGGTTGTAAATGCAGAAGGTAAATATATCACAG TGGAACTATGGTTGTAAATGCAGACGGTAAATATATCACAG < 41bp 0.792789632919573 0.424823432806727 0.20256442 0.28088906 prediction 0.585579265839145 Functional Loss - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80577243 chr16:80577247 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_55748 0 0 0 3 80577231 80577248 mRNA hsa-miR-876-5p DYNLRB2 miRanda miRanda
5050 chr17 37822438 37822438 1 + G T rs45506294 37822436 + 37822416 37822456 41 GCTAGGACTGTGGAGGGGAGCTGCTGGCCATGGCTGCTTTG GCTAGGACTGTGGAGGGGAGCTTCTGGCCATGGCTGCTTTG < 41bp 0.836886994179125 0.544110927569512 0.086455286 0.061218977 prediction 0.585552133219225 Functional Loss - TCAP ENSG00000173991 UTR3 Human protein_coding chr17:37822436 chr17:37822438 . . 0 23 hm5C_associated_SNPs_55751 3 0 0 2 37822430 37822453 mRNA hsa-miR-103 TCAP miRanda miRanda
5051 chr17 37822438 37822438 1 + G T rs45506294 37822436 + 37822416 37822456 41 GCTAGGACTGTGGAGGGGAGCTGCTGGCCATGGCTGCTTTG GCTAGGACTGTGGAGGGGAGCTTCTGGCCATGGCTGCTTTG < 41bp 0.836886994179125 0.544110927569512 0.086455286 0.061218977 prediction 0.585552133219225 Functional Loss - TCAP ENSG00000173991 UTR3 Human protein_coding chr17:37822436 chr17:37822438 . . 0 23 hm5C_associated_SNPs_55751 3 0 0 2 37822430 37822453 mRNA hsa-miR-107 TCAP miRanda miRanda
5052 chrX 47085748 47085748 1 + A C UCEC 47085744 + 47085724 47085764 41 AGAAGGTGCTACACCGAGACCTCAAGCCCCAGAACCTGCTC AGAAGGTGCTACACCGAGACCTCACGCCCCAGAACCTGCTC < 41bp 0.792721057247914 0.365144638790326 0.34276414 0.13459644 prediction 0.585442114495827 Functional Loss - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47085744 chrX:47085748 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_55758 0 0 1 1 47085744 47085765 mRNA hsa-miR-214 CDK16 miRanda miRanda
5053 chr15 92690292 92690292 1 + G T LUSC 92690290 + 92690270 92690310 41 TCCTGGAAAATGCCCCAGTCCTGGGTGCCAAGAGGCCTTCC TCCTGGAAAATGCCCCAGTCCTTGGTGCCAAGAGGCCTTCC < 41bp 0.792652836212749 0.469658812806112 0.36397207 0.15364882 prediction 0.585305672425498 Functional Loss - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92690290 chr15:92690292 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_55767 0 0 1 2 92690278 92690301 mRNA hsa-miR-96 SLCO3A1 miRanda miRanda
5054 chr15 92690292 92690292 1 + G T LUSC 92690290 + 92690270 92690310 41 TCCTGGAAAATGCCCCAGTCCTGGGTGCCAAGAGGCCTTCC TCCTGGAAAATGCCCCAGTCCTTGGTGCCAAGAGGCCTTCC < 41bp 0.792652836212749 0.469658812806112 0.36397207 0.15364882 prediction 0.585305672425498 Functional Loss - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92690290 chr15:92690292 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_55767 0 0 1 2 92690280 92690301 mRNA hsa-miR-1271 SLCO3A1 miRanda miRanda
5055 chr5 134229342 134229342 1 + G T COAD 134229340 + 134229320 134229360 41 GCACTGGATGCATCTCAGCACAGCAGGTATCTTCCATTGGT GCACTGGATGCATCTCAGCACATCAGGTATCTTCCATTGGT < 41bp 0.826879649991535 0.534559446902071 0.28325814 0.28924176 prediction 0.584640406178927 Functional Loss - TXNDC15 ENSG00000113621 CDS Human protein_coding chr5:134229340 chr5:134229342 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_55807 0 0 1 1 134229340 134229345 mRNA hsa-miR-490-3p TXNDC15 miRanda miRanda
5056 chr17 41063095 41063095 1 + G T UCEC 41063093 + 41063073 41063113 41 TGTGGACTCTGGAGAAAGCCCAGAGGTGGTGCGAGCAGCCA TGTGGACTCTGGAGAAAGCCCATAGGTGGTGCGAGCAGCCA < 41bp 0.792134236866601 0.461743632965399 0.7699164 0.28925163 prediction 0.584268473733202 Functional Loss - G6PC ENSG00000131482 CDS Human protein_coding chr17:41063093 chr17:41063095 nonsynonymous SNV 0.864 1 23 hm5C_associated_SNPs_55844 0 0 1 2 41063077 41063098 mRNA hsa-miR-330-5p G6PC miRanda miRanda
5057 chr17 41063095 41063095 1 + G T UCEC 41063093 + 41063073 41063113 41 TGTGGACTCTGGAGAAAGCCCAGAGGTGGTGCGAGCAGCCA TGTGGACTCTGGAGAAAGCCCATAGGTGGTGCGAGCAGCCA < 41bp 0.792134236866601 0.461743632965399 0.7699164 0.28925163 prediction 0.584268473733202 Functional Loss - G6PC ENSG00000131482 CDS Human protein_coding chr17:41063093 chr17:41063095 nonsynonymous SNV 0.864 1 23 hm5C_associated_SNPs_55844 0 0 1 2 41063081 41063098 mRNA hsa-miR-326 G6PC miRanda miRanda
5058 chr15 20488861 20488861 1 + G T GBM 20488858 + 20488838 20488878 41 TCTTGTTTCTGTTGGGACTGCTGGGTATAACCGTGCTGTGG TCTTGTTTCTGTTGGGACTGCTGTGTATAACCGTGCTGTGG < 41bp 0.792018659459077 0.441302006717518 0.87508726 0.24512878 prediction 0.584037318918155 Functional Loss - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20488858 chr15:20488861 . . 0 24 hm5C_associated_SNPs_55861 0 0 0 1 20488861 20488885 mRNA hsa-miR-15b LOC646096 miRanda miRanda
5059 chr2 203817371 203817371 1 + G T UCEC 203817369 + 203817349 203817389 41 TGGCACAAGTGATTATACCTCAGGGGCAACTTGTGGATGTG TGGCACAAGTGATTATACCTCATGGGCAACTTGTGGATGTG < 41bp 0.841678614275661 0.549976738554758 0.9292222 0.17044121 prediction 0.583403751441808 Functional Loss - CARF ENSG00000138380 CDS Human protein_coding chr2:203817369 chr2:203817371 nonsynonymous SNV 0.802 3 23 hm5C_associated_SNPs_55920 0 0 0 2 203817351 203817374 mRNA hsa-miR-125b ALS2CR8 miRanda miRanda
5060 chr2 203817371 203817371 1 + G T UCEC 203817369 + 203817349 203817389 41 TGGCACAAGTGATTATACCTCAGGGGCAACTTGTGGATGTG TGGCACAAGTGATTATACCTCATGGGCAACTTGTGGATGTG < 41bp 0.841678614275661 0.549976738554758 0.9292222 0.17044121 prediction 0.583403751441808 Functional Loss - CARF ENSG00000138380 CDS Human protein_coding chr2:203817369 chr2:203817371 nonsynonymous SNV 0.802 3 23 hm5C_associated_SNPs_55920 0 0 0 2 203817351 203817374 mRNA hsa-miR-125a-5p ALS2CR8 miRanda miRanda
5061 chr1 109321988 109321988 1 + G T SARC 109321986 + 109321966 109322006 41 TCCTGCATGAACTGACCTTTCAGGCAATGGCATATGATCTA TCCTGCATGAACTGACCTTTCATGCAATGGCATATGATCTA < 41bp 0.82097619695526 0.529327562123444 0.40402353 0.06282854 prediction 0.583297269663633 Functional Loss - STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109321986 chr1:109321988 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55924 0 0 0 3 109321988 109322013 mRNA hsa-miR-196a STXBP3 miRanda miRanda
5062 chr1 109321988 109321988 1 + G T SARC 109321986 + 109321966 109322006 41 TCCTGCATGAACTGACCTTTCAGGCAATGGCATATGATCTA TCCTGCATGAACTGACCTTTCATGCAATGGCATATGATCTA < 41bp 0.82097619695526 0.529327562123444 0.40402353 0.06282854 prediction 0.583297269663633 Functional Loss - STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109321986 chr1:109321988 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55924 0 0 0 3 109321988 109322013 mRNA hsa-miR-196b STXBP3 miRanda miRanda
5063 chr1 109321988 109321988 1 + G T SARC 109321986 + 109321966 109322006 41 TCCTGCATGAACTGACCTTTCAGGCAATGGCATATGATCTA TCCTGCATGAACTGACCTTTCATGCAATGGCATATGATCTA < 41bp 0.82097619695526 0.529327562123444 0.40402353 0.06282854 prediction 0.583297269663633 Functional Loss - STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109321986 chr1:109321988 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_55924 0 0 0 3 109321968 109321988 mRNA hsa-miR-488 STXBP3 miRanda miRanda
5064 chr15 102516460 102516460 1 + G T LGG 102516457 + 102516437 102516477 41 GCAGAGGAGGACGAGGACGACTGGGAATCCTAGGGGGCTCC GCAGAGGAGGACGAGGACGACTGTGAATCCTAGGGGGCTCC < 41bp 0.866255402104897 0.574938809785606 0.40454096 0.17963299 prediction 0.582633184638582 Functional Loss - WASH3P ENSG00000185596 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102516457 chr15:102516460 . . 0 24 hm5C_associated_SNPs_55978 0 0 0 3 102516437 102516461 mRNA hsa-miR-199a-5p WASH3P miRanda miRanda
5065 chr15 102516460 102516460 1 + G T LGG 102516457 + 102516437 102516477 41 GCAGAGGAGGACGAGGACGACTGGGAATCCTAGGGGGCTCC GCAGAGGAGGACGAGGACGACTGTGAATCCTAGGGGGCTCC < 41bp 0.866255402104897 0.574938809785606 0.40454096 0.17963299 prediction 0.582633184638582 Functional Loss - WASH3P ENSG00000185596 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102516457 chr15:102516460 . . 0 24 hm5C_associated_SNPs_55978 0 0 0 3 102516437 102516461 mRNA hsa-miR-199a-5p WASH2P miRanda miRanda
5066 chr15 102516460 102516460 1 + G T LGG 102516457 + 102516437 102516477 41 GCAGAGGAGGACGAGGACGACTGGGAATCCTAGGGGGCTCC GCAGAGGAGGACGAGGACGACTGTGAATCCTAGGGGGCTCC < 41bp 0.866255402104897 0.574938809785606 0.40454096 0.17963299 prediction 0.582633184638582 Functional Loss - WASH3P ENSG00000185596 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102516457 chr15:102516460 . . 0 24 hm5C_associated_SNPs_55978 0 0 0 3 102516437 102516461 mRNA hsa-miR-199a-5p WASH7P miRanda miRanda
5067 chr14 23240556 23240556 1 + G T UCEC 23240553 + 23240533 23240573 41 AATCAGTTGGAGCTAGCAGCCAGGGGTAAATAGTCCTTTCA AATCAGTTGGAGCTAGCAGCCAGTGGTAAATAGTCCTTTCA < 41bp 0.889087251594643 0.597805945385212 0.92178583 0.8293201 prediction 0.582562612418862 Functional Loss - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240553 chr14:23240556 nonsynonymous SNV 0.690 2 24 hm5C_associated_SNPs_55983 0 0 0 1 23240538 23240557 mRNA hsa-miR-504 OXA1L miRanda miRanda
5068 chr11 2335797 2335797 1 + G T BLCA 2335794 + 2335774 2335814 41 GTGTCAGGGAGAGGAGGCGGCGAGAGAGGTGAGGGGGGGAC GTGTCAGGGAGAGGAGGCGGCGATAGAGGTGAGGGGGGGAC < 41bp 0.871018918838285 0.580031637195184 0.90052307 0.89126503 prediction 0.5819745632862 Functional Loss - TSPAN32 ENSG00000064201 CDS Human protein_coding chr11:2335794 chr11:2335797 nonsynonymous SNV 0.128 2 24 hm5C_associated_SNPs_56030 0 0 1 1 2335797 2335801 mRNA hsa-miR-874 TSPAN32 miRanda miRanda
5069 chr15 67073688 67073688 1 + A T LUAD 67073684 + 67073664 67073704 41 CGCAAGGTGCCCCCCGGCTACTCCATCAAGGTGTTCGACTT CGCAAGGTGCCCCCCGGCTACTCCTTCAAGGTGTTCGACTT < 41bp 0.8335956386194 0.542812854994366 0.96356356 0.27678943 prediction 0.581565567250068 Functional Loss - SMAD6 ENSG00000137834 CDS Human protein_coding chr15:67073684 chr15:67073688 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_56064 0 0 1 1 67073680 67073703 mRNA hsa-miR-505 SMAD6 miRanda miRanda
5070 chr2 231134608 231134608 1 + G T UCEC 231134606 + 231134586 231134626 41 TTCCTGTGTCATGTGTTTCTCAGAAGAGGTGCCAGGAAGCC TTCCTGTGTCATGTGTTTCTCATAAGAGGTGCCAGGAAGCC < 41bp 0.790676910859924 0.471443602986503 0.8755113 0.22122282 prediction 0.581353821719847 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231134606 chr2:231134608 stopgain 0.399 0 23 hm5C_associated_SNPs_56084 0 0 0 1 231134597 231134620 mRNA hsa-miR-328 SP140 miRanda miRanda
5071 chr19 55597258 55597258 1 + G T LGG 55597256 + 55597236 55597276 41 GCCTCAGCTGGAGTCAGAGACAGCAGGAAAATGGGTCCTGT GCCTCAGCTGGAGTCAGAGACATCAGGAAAATGGGTCCTGT < 41bp 0.790637406064929 0.468522641234245 0.50697935 0.27357584 prediction 0.581274812129857 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55597256 chr19:55597258 nonsynonymous SNV 0.013 0 23 hm5C_associated_SNPs_56093 0 0 0 1 55597242 55597263 mRNA hsa-miR-370 EPS8L1 miRanda miRanda
5072 chr1 76216217 76216217 1 + A T LUAD 76216213 + 76216193 76216233 41 GCCCTGGAAAGGAAAACTTTCGGAAAGCTACTTGTAGAGGT GCCCTGGAAAGGAAAACTTTCGGATAGCTACTTGTAGAGGT < 41bp 0.80039027081825 0.509769958244732 0.82239974 0.83440757 prediction 0.581240625147036 Functional Loss - ACADM ENSG00000117054 CDS Human protein_coding chr1:76216213 chr1:76216217 stopgain 0.925 1 25 hm5C_associated_SNPs_56095 0 0 1 5 76216200 76216226 mRNA hsa-miR-302a ACADM miRanda miRanda
5073 chr1 76216217 76216217 1 + A T LUAD 76216213 + 76216193 76216233 41 GCCCTGGAAAGGAAAACTTTCGGAAAGCTACTTGTAGAGGT GCCCTGGAAAGGAAAACTTTCGGATAGCTACTTGTAGAGGT < 41bp 0.80039027081825 0.509769958244732 0.82239974 0.83440757 prediction 0.581240625147036 Functional Loss - ACADM ENSG00000117054 CDS Human protein_coding chr1:76216213 chr1:76216217 stopgain 0.925 1 25 hm5C_associated_SNPs_56095 0 0 1 5 76216200 76216226 mRNA hsa-miR-302b ACADM miRanda miRanda
5074 chr1 76216217 76216217 1 + A T LUAD 76216213 + 76216193 76216233 41 GCCCTGGAAAGGAAAACTTTCGGAAAGCTACTTGTAGAGGT GCCCTGGAAAGGAAAACTTTCGGATAGCTACTTGTAGAGGT < 41bp 0.80039027081825 0.509769958244732 0.82239974 0.83440757 prediction 0.581240625147036 Functional Loss - ACADM ENSG00000117054 CDS Human protein_coding chr1:76216213 chr1:76216217 stopgain 0.925 1 25 hm5C_associated_SNPs_56095 0 0 1 5 76216212 76216230 mRNA hsa-miR-381 ACADM miRanda miRanda
5075 chr1 76216217 76216217 1 + A T LUAD 76216213 + 76216193 76216233 41 GCCCTGGAAAGGAAAACTTTCGGAAAGCTACTTGTAGAGGT GCCCTGGAAAGGAAAACTTTCGGATAGCTACTTGTAGAGGT < 41bp 0.80039027081825 0.509769958244732 0.82239974 0.83440757 prediction 0.581240625147036 Functional Loss - ACADM ENSG00000117054 CDS Human protein_coding chr1:76216213 chr1:76216217 stopgain 0.925 1 25 hm5C_associated_SNPs_56095 0 0 1 5 76216215 76216231 mRNA hsa-miR-499-5p ACADM miRanda miRanda
5076 chr1 76216217 76216217 1 + A T LUAD 76216213 + 76216193 76216233 41 GCCCTGGAAAGGAAAACTTTCGGAAAGCTACTTGTAGAGGT GCCCTGGAAAGGAAAACTTTCGGATAGCTACTTGTAGAGGT < 41bp 0.80039027081825 0.509769958244732 0.82239974 0.83440757 prediction 0.581240625147036 Functional Loss - ACADM ENSG00000117054 CDS Human protein_coding chr1:76216213 chr1:76216217 stopgain 0.925 1 25 hm5C_associated_SNPs_56095 0 0 1 5 76216212 76216230 mRNA hsa-miR-300 ACADM miRanda miRanda
5077 chrX 133609230 133609230 1 + G T LUSC 133609227 + 133609207 133609247 41 GTAGGACTGAACGTCTTGCTCGAGATGTGATGAAGGAGATG GTAGGACTGAACGTCTTGCTCGATATGTGATGAAGGAGATG < 41bp 0.889391176423696 0.599112930391139 0.8856745 0.3436854 prediction 0.580556492065113 Functional Loss - HPRT1 ENSG00000165704 CDS Human protein_coding chrX:133609227 chrX:133609230 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_56152 0 0 1 1 133609221 133609243 mRNA hsa-miR-205 HPRT1 miRanda miRanda
5078 chr2 114195568 114195568 1 + G T UCEC 114195565 + 114195545 114195585 41 GAAAAGTCTGGCCTCGGCGCCAAGATCCCAGTCACAATTAT GAAAAGTCTGGCCTCGGCGCCAATATCCCAGTCACAATTAT < 41bp 0.789378629568235 0.430655818912013 0.27101564 0.046290338 prediction 0.57875725913647 Functional Loss - CBWD2 ENSG00000136682 CDS Human protein_coding chr2:114195565 chr2:114195568 nonsynonymous SNV 0.874 2 24 hm5C_associated_SNPs_56300 0 0 0 2 114195554 114195580 mRNA hsa-miR-134 CBWD2 miRanda miRanda
5079 chr2 114195568 114195568 1 + G T UCEC 114195565 + 114195545 114195585 41 GAAAAGTCTGGCCTCGGCGCCAAGATCCCAGTCACAATTAT GAAAAGTCTGGCCTCGGCGCCAATATCCCAGTCACAATTAT < 41bp 0.789378629568235 0.430655818912013 0.27101564 0.046290338 prediction 0.57875725913647 Functional Loss - CBWD2 ENSG00000136682 CDS Human protein_coding chr2:114195565 chr2:114195568 nonsynonymous SNV 0.874 2 24 hm5C_associated_SNPs_56300 0 0 0 2 114195562 114195582 mRNA hsa-miR-758 CBWD2 miRanda miRanda
5080 chr9 140147703 140147703 1 + G T SARC 140147701 + 140147681 140147721 41 CCTTCTGCACGCTCTAGAGCCAGCTGGGCACAACCTGCTTG CCTTCTGCACGCTCTAGAGCCATCTGGGCACAACCTGCTTG < 41bp 0.789016214398204 0.459023159921883 0.60466385 0.25417286 prediction 0.578032428796407 Functional Loss - STPG3 ENSG00000197768 CDS Human protein_coding chr9:140147701 chr9:140147703 nonsynonymous SNV 0.010 1 23 hm5C_associated_SNPs_56354 0 0 0 1 140147681 140147704 mRNA hsa-miR-149 C9orf173 miRanda miRanda
5081 chr4 146563538 146563538 1 + G T SKCM 146563536 + 146563516 146563556 41 ATTGTCTGGGCCCCCTGGTGCTGGAAAATCAACATTTATAG ATTGTCTGGGCCCCCTGGTGCTTGAAAATCAACATTTATAG < 41bp 0.83530578708996 0.546464506734098 0.14409542 0.0386253 prediction 0.577682560711724 Functional Loss - MMAA ENSG00000151611 CDS Human protein_coding chr4:146563536 chr4:146563538 stopgain 1.000 1 23 hm5C_associated_SNPs_56381 0 0 0 6 146563517 146563538 mRNA hsa-miR-29a MMAA miRanda miRanda
5082 chr4 146563538 146563538 1 + G T SKCM 146563536 + 146563516 146563556 41 ATTGTCTGGGCCCCCTGGTGCTGGAAAATCAACATTTATAG ATTGTCTGGGCCCCCTGGTGCTTGAAAATCAACATTTATAG < 41bp 0.83530578708996 0.546464506734098 0.14409542 0.0386253 prediction 0.577682560711724 Functional Loss - MMAA ENSG00000151611 CDS Human protein_coding chr4:146563536 chr4:146563538 stopgain 1.000 1 23 hm5C_associated_SNPs_56381 0 0 0 6 146563516 146563538 mRNA hsa-miR-29b MMAA miRanda miRanda
5083 chr4 146563538 146563538 1 + G T SKCM 146563536 + 146563516 146563556 41 ATTGTCTGGGCCCCCTGGTGCTGGAAAATCAACATTTATAG ATTGTCTGGGCCCCCTGGTGCTTGAAAATCAACATTTATAG < 41bp 0.83530578708996 0.546464506734098 0.14409542 0.0386253 prediction 0.577682560711724 Functional Loss - MMAA ENSG00000151611 CDS Human protein_coding chr4:146563536 chr4:146563538 stopgain 1.000 1 23 hm5C_associated_SNPs_56381 0 0 0 6 146563517 146563538 mRNA hsa-miR-29c MMAA miRanda miRanda
5084 chr4 146563538 146563538 1 + G T SKCM 146563536 + 146563516 146563556 41 ATTGTCTGGGCCCCCTGGTGCTGGAAAATCAACATTTATAG ATTGTCTGGGCCCCCTGGTGCTTGAAAATCAACATTTATAG < 41bp 0.83530578708996 0.546464506734098 0.14409542 0.0386253 prediction 0.577682560711724 Functional Loss - MMAA ENSG00000151611 CDS Human protein_coding chr4:146563536 chr4:146563538 stopgain 1.000 1 23 hm5C_associated_SNPs_56381 0 0 0 6 146563535 146563556 mRNA hsa-miR-340 MMAA miRanda miRanda
5085 chr4 146563538 146563538 1 + G T SKCM 146563536 + 146563516 146563556 41 ATTGTCTGGGCCCCCTGGTGCTGGAAAATCAACATTTATAG ATTGTCTGGGCCCCCTGGTGCTTGAAAATCAACATTTATAG < 41bp 0.83530578708996 0.546464506734098 0.14409542 0.0386253 prediction 0.577682560711724 Functional Loss - MMAA ENSG00000151611 CDS Human protein_coding chr4:146563536 chr4:146563538 stopgain 1.000 1 23 hm5C_associated_SNPs_56381 0 0 0 6 146563519 146563540 mRNA hsa-miR-338-3p MMAA miRanda miRanda
5086 chr4 146563538 146563538 1 + G T SKCM 146563536 + 146563516 146563556 41 ATTGTCTGGGCCCCCTGGTGCTGGAAAATCAACATTTATAG ATTGTCTGGGCCCCCTGGTGCTTGAAAATCAACATTTATAG < 41bp 0.83530578708996 0.546464506734098 0.14409542 0.0386253 prediction 0.577682560711724 Functional Loss - MMAA ENSG00000151611 CDS Human protein_coding chr4:146563536 chr4:146563538 stopgain 1.000 1 23 hm5C_associated_SNPs_56381 0 0 0 6 146563530 146563550 mRNA hsa-miR-653 MMAA miRanda miRanda
5087 chr2 66670158 66670158 1 + G T COAD 66670155 + 66670135 66670175 41 ATCAGACAGTGAAGATATAACAAGATCAGCAAATCTAACTG ATCAGACAGTGAAGATATAACAATATCAGCAAATCTAACTG < 41bp 0.788696130301021 0.435064688041634 0.25917563 0.055982113 prediction 0.577392260602041 Functional Loss - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66670155 chr2:66670158 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_56399 0 0 0 1 66670157 66670178 mRNA hsa-miR-223 MEIS1 miRanda miRanda
5088 chr9 132084840 132084840 1 + G T LUAD 132084838 + 132084818 132084858 41 GACCTATAGGAGGCACTGCCCAGAGCTCCTAACTGGGGTGG GACCTATAGGAGGCACTGCCCATAGCTCCTAACTGGGGTGG < 41bp 0.7885871816234 0.499779708701027 0.6281363 0.056818128 prediction 0.577174363246799 Functional Loss - C9orf106 ENSG00000179082 ncRNA_exonic Human lincRNA chr9:132084838 chr9:132084840 . . 0 23 hm5C_associated_SNPs_56417 0 0 0 4 132084824 132084848 mRNA hsa-miR-28-5p C9orf106 miRanda miRanda
5089 chr9 132084840 132084840 1 + G T LUAD 132084838 + 132084818 132084858 41 GACCTATAGGAGGCACTGCCCAGAGCTCCTAACTGGGGTGG GACCTATAGGAGGCACTGCCCATAGCTCCTAACTGGGGTGG < 41bp 0.7885871816234 0.499779708701027 0.6281363 0.056818128 prediction 0.577174363246799 Functional Loss - C9orf106 ENSG00000179082 ncRNA_exonic Human lincRNA chr9:132084838 chr9:132084840 . . 0 23 hm5C_associated_SNPs_56417 0 0 0 4 132084821 132084843 mRNA hsa-miR-330-5p C9orf106 miRanda miRanda
5090 chr9 132084840 132084840 1 + G T LUAD 132084838 + 132084818 132084858 41 GACCTATAGGAGGCACTGCCCAGAGCTCCTAACTGGGGTGG GACCTATAGGAGGCACTGCCCATAGCTCCTAACTGGGGTGG < 41bp 0.7885871816234 0.499779708701027 0.6281363 0.056818128 prediction 0.577174363246799 Functional Loss - C9orf106 ENSG00000179082 ncRNA_exonic Human lincRNA chr9:132084838 chr9:132084840 . . 0 23 hm5C_associated_SNPs_56417 0 0 0 4 132084824 132084843 mRNA hsa-miR-326 C9orf106 miRanda miRanda
5091 chr9 132084840 132084840 1 + G T LUAD 132084838 + 132084818 132084858 41 GACCTATAGGAGGCACTGCCCAGAGCTCCTAACTGGGGTGG GACCTATAGGAGGCACTGCCCATAGCTCCTAACTGGGGTGG < 41bp 0.7885871816234 0.499779708701027 0.6281363 0.056818128 prediction 0.577174363246799 Functional Loss - C9orf106 ENSG00000179082 ncRNA_exonic Human lincRNA chr9:132084838 chr9:132084840 . . 0 23 hm5C_associated_SNPs_56417 0 0 0 4 132084826 132084848 mRNA hsa-miR-708 C9orf106 miRanda miRanda
5092 chr1 15986589 15986589 1 + G T LUSC 15986586 + 15986566 15986606 41 AGAAAGAACATCTTTCTTTACAAGATCTTTCTGATCATGCT AGAAAGAACATCTTTCTTTACAATATCTTTCTGATCATGCT < 41bp 0.872737411077582 0.584268786432186 0.16674367 0.043164313 prediction 0.576937249290791 Functional Loss - RSC1A1 ENSG00000215695 CDS Human protein_coding chr1:15986586 chr1:15986589 nonsynonymous SNV 0.651 1 24 hm5C_associated_SNPs_56436 0 0 1 2 15986581 15986602 mRNA hsa-miR-361-5p DDI2 miRanda miRanda
5093 chr1 15986589 15986589 1 + G T LUSC 15986586 + 15986566 15986606 41 AGAAAGAACATCTTTCTTTACAAGATCTTTCTGATCATGCT AGAAAGAACATCTTTCTTTACAATATCTTTCTGATCATGCT < 41bp 0.872737411077582 0.584268786432186 0.16674367 0.043164313 prediction 0.576937249290791 Functional Loss - RSC1A1 ENSG00000215695 CDS Human protein_coding chr1:15986586 chr1:15986589 nonsynonymous SNV 0.651 1 24 hm5C_associated_SNPs_56436 0 0 1 2 15986581 15986602 mRNA hsa-miR-383 DDI2 miRanda miRanda
5094 chr6 4612075 4612075 1 + G T rs116574263 4612072 + 4612052 4612092 41 GTCTCACCCACCCGTGCTCCCAAGAGAGCAATTCATCATGT GTCTCACCCACCCGTGCTCCCAATAGAGCAATTCATCATGT < 41bp 0.788446410028299 0.45532466131502 0.8257705 0.034679145 prediction 0.576892820056598 Functional Loss - KU-MEL-3 ENSG00000205444 downstream Human lincRNA chr6:4612072 chr6:4612075 . . 0 24 hm5C_associated_SNPs_56443 0 0 0 1 4612074 4612097 mRNA hsa-miR-217 KU-MEL-3 miRanda miRanda
5095 chr5 96249063 96249063 1 + G T UCEC 96249061 + 96249041 96249081 41 AAGGAAAGGTTATCAAGACACAGAACTTGGCAGCTCTCCTT AAGGAAAGGTTATCAAGACACATAACTTGGCAGCTCTCCTT < 41bp 0.788258877705023 0.459478392992001 0.0772818 0.03211254 prediction 0.576517755410046 Functional Loss - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96249061 chr5:96249063 nonsynonymous SNV 0.016 3 23 hm5C_associated_SNPs_56475 0 0 0 1 96249044 96249063 mRNA hsa-miR-218 ERAP2 miRanda miRanda
5096 chr17 63149573 63149573 1 + G T UCEC 63149570 + 63149550 63149590 41 TCGTGAAGGACATGCAGAACCCAGAGACAGGGGTCCGAATG TCGTGAAGGACATGCAGAACCCATAGACAGGGGTCCGAATG < 41bp 0.788149888328879 0.404769520886579 0.3871118 0.04963991 prediction 0.576299776657758 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63149570 chr17:63149573 stopgain 0.969 1 24 hm5C_associated_SNPs_56494 0 0 0 3 63149552 63149576 mRNA hsa-miR-330-5p RGS9 miRanda miRanda
5097 chr17 63149573 63149573 1 + G T UCEC 63149570 + 63149550 63149590 41 TCGTGAAGGACATGCAGAACCCAGAGACAGGGGTCCGAATG TCGTGAAGGACATGCAGAACCCATAGACAGGGGTCCGAATG < 41bp 0.788149888328879 0.404769520886579 0.3871118 0.04963991 prediction 0.576299776657758 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63149570 chr17:63149573 stopgain 0.969 1 24 hm5C_associated_SNPs_56494 0 0 0 3 63149557 63149576 mRNA hsa-miR-326 RGS9 miRanda miRanda
5098 chr17 63149573 63149573 1 + G T UCEC 63149570 + 63149550 63149590 41 TCGTGAAGGACATGCAGAACCCAGAGACAGGGGTCCGAATG TCGTGAAGGACATGCAGAACCCATAGACAGGGGTCCGAATG < 41bp 0.788149888328879 0.404769520886579 0.3871118 0.04963991 prediction 0.576299776657758 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63149570 chr17:63149573 stopgain 0.969 1 24 hm5C_associated_SNPs_56494 0 0 0 3 63149560 63149582 mRNA hsa-miR-339-5p RGS9 miRanda miRanda
5099 chr15 88122580 88122580 1 + G T rs182276628 88122578 + 88122558 88122598 41 CAGGGATTTTCTCATTAGCACAGGGTTCCAAGCCCAAACCG CAGGGATTTTCTCATTAGCACATGGTTCCAAGCCCAAACCG < 41bp 0.812683445426886 0.524576572015133 0.33874452 0.13986829 prediction 0.576213746823507 Functional Loss - LINC00052 ENSG00000259527 ncRNA_exonic Human lincRNA chr15:88122578 chr15:88122580 . . 0 23 hm5C_associated_SNPs_56502 0 0 1 2 88122560 88122584 mRNA hsa-miR-10a NCRNA00052 miRanda miRanda
5100 chr15 88122580 88122580 1 + G T rs182276628 88122578 + 88122558 88122598 41 CAGGGATTTTCTCATTAGCACAGGGTTCCAAGCCCAAACCG CAGGGATTTTCTCATTAGCACATGGTTCCAAGCCCAAACCG < 41bp 0.812683445426886 0.524576572015133 0.33874452 0.13986829 prediction 0.576213746823507 Functional Loss - LINC00052 ENSG00000259527 ncRNA_exonic Human lincRNA chr15:88122578 chr15:88122580 . . 0 23 hm5C_associated_SNPs_56502 0 0 1 2 88122562 88122584 mRNA hsa-miR-10b NCRNA00052 miRanda miRanda
5101 chr17 48245345 48245345 1 + G T LIHC 48245342 + 48245322 48245362 41 TCGGGACAGCTTTGATACCACTCGGCAGAGGCTGGTGCTGG TCGGGACAGCTTTGATACCACTCTGCAGAGGCTGGTGCTGG < 41bp 0.788077890067577 0.398894419949228 0.11286712 0.14590159 prediction 0.576155780135154 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245342 chr17:48245345 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_56507 0 0 0 4 48245340 48245361 mRNA hsa-miR-29a SGCA miRanda miRanda
5102 chr17 48245345 48245345 1 + G T LIHC 48245342 + 48245322 48245362 41 TCGGGACAGCTTTGATACCACTCGGCAGAGGCTGGTGCTGG TCGGGACAGCTTTGATACCACTCTGCAGAGGCTGGTGCTGG < 41bp 0.788077890067577 0.398894419949228 0.11286712 0.14590159 prediction 0.576155780135154 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245342 chr17:48245345 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_56507 0 0 0 4 48245338 48245361 mRNA hsa-miR-29b SGCA miRanda miRanda
5103 chr17 48245345 48245345 1 + G T LIHC 48245342 + 48245322 48245362 41 TCGGGACAGCTTTGATACCACTCGGCAGAGGCTGGTGCTGG TCGGGACAGCTTTGATACCACTCTGCAGAGGCTGGTGCTGG < 41bp 0.788077890067577 0.398894419949228 0.11286712 0.14590159 prediction 0.576155780135154 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245342 chr17:48245345 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_56507 0 0 0 4 48245344 48245368 mRNA hsa-miR-216a SGCA miRanda miRanda
5104 chr17 48245345 48245345 1 + G T LIHC 48245342 + 48245322 48245362 41 TCGGGACAGCTTTGATACCACTCGGCAGAGGCTGGTGCTGG TCGGGACAGCTTTGATACCACTCTGCAGAGGCTGGTGCTGG < 41bp 0.788077890067577 0.398894419949228 0.11286712 0.14590159 prediction 0.576155780135154 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245342 chr17:48245345 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_56507 0 0 0 4 48245340 48245361 mRNA hsa-miR-29c SGCA miRanda miRanda
5105 chr8 23429055 23429055 1 + A T LUAD 23429051 + 23429031 23429071 41 ACCCCCACCGGACCTACAACCCGCAGTCCCACATCATCTCA ACCCCCACCGGACCTACAACCCGCTGTCCCACATCATCTCA < 41bp 0.817945298608306 0.529907246444845 0.26399153 0.24087355 prediction 0.576076104326923 Functional Loss - SLC25A37 ENSG00000147454 CDS Human protein_coding chr8:23429051 chr8:23429055 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_56512 0 0 1 2 23429048 23429071 mRNA hsa-miR-143 SLC25A37 miRanda miRanda
5106 chr8 23429055 23429055 1 + A T LUAD 23429051 + 23429031 23429071 41 ACCCCCACCGGACCTACAACCCGCAGTCCCACATCATCTCA ACCCCCACCGGACCTACAACCCGCTGTCCCACATCATCTCA < 41bp 0.817945298608306 0.529907246444845 0.26399153 0.24087355 prediction 0.576076104326923 Functional Loss - SLC25A37 ENSG00000147454 CDS Human protein_coding chr8:23429051 chr8:23429055 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_56512 0 0 1 2 23429044 23429065 mRNA hsa-miR-299-3p SLC25A37 miRanda miRanda
5107 chr6 49518784 49518784 1 + G T rs372275351 49518782 + 49518762 49518802 41 GAGAGAAAGTGCTCTTTCTCCTGCACCCAGAGAGGTGGTTA GAGAGAAAGTGCTCTTTCTCCTTCACCCAGAGAGGTGGTTA < 41bp 0.832492231655423 0.544616418355339 0.32467282 0.17716447 prediction 0.575751626600169 Functional Loss - C6orf141 ENSG00000197261 CDS Human protein_coding chr6:49518782 chr6:49518784 synonymous SNV . 0 23 hm5C_associated_SNPs_56537 0 0 0 2 49518773 49518794 mRNA hsa-miR-330-5p C6orf141 miRanda miRanda
5108 chr6 49518784 49518784 1 + G T rs372275351 49518782 + 49518762 49518802 41 GAGAGAAAGTGCTCTTTCTCCTGCACCCAGAGAGGTGGTTA GAGAGAAAGTGCTCTTTCTCCTTCACCCAGAGAGGTGGTTA < 41bp 0.832492231655423 0.544616418355339 0.32467282 0.17716447 prediction 0.575751626600169 Functional Loss - C6orf141 ENSG00000197261 CDS Human protein_coding chr6:49518782 chr6:49518784 synonymous SNV . 0 23 hm5C_associated_SNPs_56537 0 0 0 2 49518775 49518794 mRNA hsa-miR-326 C6orf141 miRanda miRanda
5109 chr12 112578769 112578769 1 + G T BLCA 112578767 + 112578747 112578787 41 GCAATGTCCTTGTGAAAGATCTGAAGACTCACCCTGAAGTT GCAATGTCCTTGTGAAAGATCTTAAGACTCACCCTGAAGTT < 41bp 0.787803080545645 0.462364131482519 0.109429 0.027908444 prediction 0.575606161091289 Functional Loss - TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112578767 chr12:112578769 synonymous SNV . 0 23 hm5C_associated_SNPs_56552 0 0 1 1 112578763 112578783 mRNA hsa-miR-125a-3p TRAFD1 miRanda miRanda
5110 chr13 41383861 41383861 1 + G T rs17090557 41383858 + 41383838 41383878 41 TTGAGGACTACAGTTCATCTCAGGGTTTCTTGGAGTACAAG TTGAGGACTACAGTTCATCTCAGTGTTTCTTGGAGTACAAG < 41bp 0.78771421718814 0.411409586797322 0.9247583 0.103904635 prediction 0.57542843437628 Functional Loss - TPTE2P5 ENSG00000102743 UTR3 Human protein_coding chr13:41383858 chr13:41383861 . . 0 24 hm5C_associated_SNPs_56567 1 0 1 2 41383845 41383863 mRNA hsa-miR-125b SLC25A15 miRanda miRanda
5111 chr13 41383861 41383861 1 + G T rs17090557 41383858 + 41383838 41383878 41 TTGAGGACTACAGTTCATCTCAGGGTTTCTTGGAGTACAAG TTGAGGACTACAGTTCATCTCAGTGTTTCTTGGAGTACAAG < 41bp 0.78771421718814 0.411409586797322 0.9247583 0.103904635 prediction 0.57542843437628 Functional Loss - TPTE2P5 ENSG00000102743 UTR3 Human protein_coding chr13:41383858 chr13:41383861 . . 0 24 hm5C_associated_SNPs_56567 1 0 1 2 41383845 41383863 mRNA hsa-miR-125a-5p SLC25A15 miRanda miRanda
5112 chr10 70706374 70706374 1 + G T CESC 70706372 + 70706352 70706392 41 CAAGAAGTGGGGGCCACAAACGGAGTTTTGACTGAGTATTT CAAGAAGTGGGGGCCACAAACGTAGTTTTGACTGAGTATTT < 41bp 0.827736918762926 0.540402943048071 0.9022682 0.67577595 prediction 0.57466795142971 Functional Loss - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70706372 chr10:70706374 synonymous SNV 0.999 0 23 hm5C_associated_SNPs_56622 0 0 1 1 70706371 70706392 mRNA hsa-miR-216a DDX50 miRanda miRanda
5113 chr1 158326593 158326593 1 + G T COAD 158326590 + 158326570 158326610 41 GGAGCCAACACTCAGGACACCAAGAATTCAAGACATCAGTT GGAGCCAACACTCAGGACACCAATAATTCAAGACATCAGTT < 41bp 0.787228050784457 0.469481901259454 0.26005566 0.16808563 prediction 0.574456101568915 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158326590 chr1:158326593 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_56636 0 0 0 1 158326584 158326604 mRNA hsa-miR-431 CD1E miRanda miRanda
5114 chr19 22786139 22786139 1 + G T COAD 22786137 + 22786117 22786157 41 TGCAGCTGTTTGGTGAGATGCAGAACCCTCAGGAGCGCCCA TGCAGCTGTTTGGTGAGATGCATAACCCTCAGGAGCGCCCA < 41bp 0.787103535961863 0.465198995103788 0.80414927 0.2147207 prediction 0.574207071923726 Functional Loss - GOLGA2P9 ENSG00000268823;ENSG00000269332 ncRNA_exonic Human other chr19:22786137 chr19:22786139 . . 0 23 hm5C_associated_SNPs_56655 0 0 0 1 22786122 22786142 mRNA hsa-miR-544 LOC440518 miRanda miRanda
5115 chr7 75608805 75608805 1 + G T UCEC 75608803 + 75608783 75608823 41 CGTGTTCTACGGCTCCCAGACGGGGACTGCAGAGGAGTTTG CGTGTTCTACGGCTCCCAGACGTGGACTGCAGAGGAGTTTG < 41bp 0.864232389968395 0.577147539652488 0.8478393 0.35804266 prediction 0.574169700631813 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75608803 chr7:75608805 nonsynonymous SNV 0.982 5 23 hm5C_associated_SNPs_56660 0 0 1 1 75608805 75608828 mRNA hsa-miR-182 POR miRanda miRanda
5116 chr10 45644230 45644230 1 + G T UCEC 45644227 + 45644207 45644247 41 TGATGGAGTCAGGAATTACTCGAGAAACCTAAACTGTGAAT TGATGGAGTCAGGAATTACTCGATAAACCTAAACTGTGAAT < 41bp 0.855342036472583 0.568332252305395 0.90190053 0.3180587 prediction 0.574019568334375 Functional Loss - RSU1P2 ENSG00000235690;ENSG00000243349 ncRNA_exonic Human other chr10:45644227 chr10:45644230 . . 0 24 hm5C_associated_SNPs_56673 0 0 0 2 45644228 45644246 mRNA hsa-miR-27a LOC338579 miRanda miRanda
5117 chr10 45644230 45644230 1 + G T UCEC 45644227 + 45644207 45644247 41 TGATGGAGTCAGGAATTACTCGAGAAACCTAAACTGTGAAT TGATGGAGTCAGGAATTACTCGATAAACCTAAACTGTGAAT < 41bp 0.855342036472583 0.568332252305395 0.90190053 0.3180587 prediction 0.574019568334375 Functional Loss - RSU1P2 ENSG00000235690;ENSG00000243349 ncRNA_exonic Human other chr10:45644227 chr10:45644230 . . 0 24 hm5C_associated_SNPs_56673 0 0 0 2 45644227 45644246 mRNA hsa-miR-27b LOC338579 miRanda miRanda
5118 chr14 24607997 24607997 1 + G T UCEC 24607994 + 24607974 24608014 41 CTTCGAGAAGCTCAAGAAGCCCAGGGGAGAAACAAAGGGAA CTTCGAGAAGCTCAAGAAGCCCATGGGAGAAACAAAGGGAA < 41bp 0.786831732032853 0.438518485866273 0.5076525 0.06513369 prediction 0.573663464065705 Functional Loss - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24607994 chr14:24607997 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_56706 0 0 1 2 24607992 24608014 mRNA hsa-miR-204 PSME1 miRanda miRanda
5119 chr14 24607997 24607997 1 + G T UCEC 24607994 + 24607974 24608014 41 CTTCGAGAAGCTCAAGAAGCCCAGGGGAGAAACAAAGGGAA CTTCGAGAAGCTCAAGAAGCCCATGGGAGAAACAAAGGGAA < 41bp 0.786831732032853 0.438518485866273 0.5076525 0.06513369 prediction 0.573663464065705 Functional Loss - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24607994 chr14:24607997 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_56706 0 0 1 2 24607991 24608014 mRNA hsa-miR-211 PSME1 miRanda miRanda
5120 chr1 205568273 205568273 1 + G T UCEC 205568271 + 205568251 205568291 41 TTTGGCAGATATTCCAGGCTCAGGGCAGCTATAGTTTCCTG TTTGGCAGATATTCCAGGCTCATGGCAGCTATAGTTTCCTG < 41bp 0.786742177225792 0.449612112157786 0.60518086 0.18028623 prediction 0.573484354451583 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205568271 chr1:205568273 nonsynonymous SNV 0.974 1 23 hm5C_associated_SNPs_56722 0 0 0 5 205568259 205568281 mRNA hsa-miR-22 MFSD4 miRanda miRanda
5121 chr1 205568273 205568273 1 + G T UCEC 205568271 + 205568251 205568291 41 TTTGGCAGATATTCCAGGCTCAGGGCAGCTATAGTTTCCTG TTTGGCAGATATTCCAGGCTCATGGCAGCTATAGTTTCCTG < 41bp 0.786742177225792 0.449612112157786 0.60518086 0.18028623 prediction 0.573484354451583 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205568271 chr1:205568273 nonsynonymous SNV 0.974 1 23 hm5C_associated_SNPs_56722 0 0 0 5 205568262 205568281 mRNA hsa-miR-22 MFSD4 miRanda miRanda
5122 chr1 205568273 205568273 1 + G T UCEC 205568271 + 205568251 205568291 41 TTTGGCAGATATTCCAGGCTCAGGGCAGCTATAGTTTCCTG TTTGGCAGATATTCCAGGCTCATGGCAGCTATAGTTTCCTG < 41bp 0.786742177225792 0.449612112157786 0.60518086 0.18028623 prediction 0.573484354451583 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205568271 chr1:205568273 nonsynonymous SNV 0.974 1 23 hm5C_associated_SNPs_56722 0 0 0 5 205568259 205568276 mRNA hsa-miR-125b MFSD4 miRanda miRanda
5123 chr1 205568273 205568273 1 + G T UCEC 205568271 + 205568251 205568291 41 TTTGGCAGATATTCCAGGCTCAGGGCAGCTATAGTTTCCTG TTTGGCAGATATTCCAGGCTCATGGCAGCTATAGTTTCCTG < 41bp 0.786742177225792 0.449612112157786 0.60518086 0.18028623 prediction 0.573484354451583 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205568271 chr1:205568273 nonsynonymous SNV 0.974 1 23 hm5C_associated_SNPs_56722 0 0 0 5 205568259 205568276 mRNA hsa-miR-125a-5p MFSD4 miRanda miRanda
5124 chr1 205568273 205568273 1 + G T UCEC 205568271 + 205568251 205568291 41 TTTGGCAGATATTCCAGGCTCAGGGCAGCTATAGTTTCCTG TTTGGCAGATATTCCAGGCTCATGGCAGCTATAGTTTCCTG < 41bp 0.786742177225792 0.449612112157786 0.60518086 0.18028623 prediction 0.573484354451583 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205568271 chr1:205568273 nonsynonymous SNV 0.974 1 23 hm5C_associated_SNPs_56722 0 0 0 5 205568259 205568278 mRNA hsa-miR-874 MFSD4 miRanda miRanda
5125 chr3 128621446 128621446 1 + G T rs549000613 128621443 + 128621423 128621463 41 CGGTTCAGCATGGGCAGCGTCGTGGCTGGGCTGCTCAAGAG CGGTTCAGCATGGGCAGCGTCGTTGCTGGGCTGCTCAAGAG < 41bp 0.786637734575419 0.392866358100596 0.39452243 0.10069239 prediction 0.573275469150837 Functional Loss - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128621443 chr3:128621446 synonymous SNV . 0 24 hm5C_associated_SNPs_56727 1 0 1 1 128621443 128621467 mRNA hsa-miR-216b ACAD9 miRanda miRanda
5126 chr9 110092359 110092359 1 + G T rs553311979 110092356 + 110092336 110092376 41 GTCTCTGTTTCATGGCAACACTGGATAATGGCTTTGTGAAA GTCTCTGTTTCATGGCAACACTGTATAATGGCTTTGTGAAA < 41bp 0.786390434357458 0.436352130046061 0.12335521 0.026199728 prediction 0.572780868714916 Functional Loss - RAD23B ENSG00000119318 UTR3 Human protein_coding chr9:110092356 chr9:110092359 . . 0 24 hm5C_associated_SNPs_56771 0 0 1 2 110092338 110092360 mRNA hsa-miR-199a-5p RAD23B miRanda miRanda
5127 chr9 110092359 110092359 1 + G T rs553311979 110092356 + 110092336 110092376 41 GTCTCTGTTTCATGGCAACACTGGATAATGGCTTTGTGAAA GTCTCTGTTTCATGGCAACACTGTATAATGGCTTTGTGAAA < 41bp 0.786390434357458 0.436352130046061 0.12335521 0.026199728 prediction 0.572780868714916 Functional Loss - RAD23B ENSG00000119318 UTR3 Human protein_coding chr9:110092356 chr9:110092359 . . 0 24 hm5C_associated_SNPs_56771 0 0 1 2 110092338 110092360 mRNA hsa-miR-199b-5p RAD23B miRanda miRanda
5128 chr10 118236902 118236902 1 + G T rs142739759 118236899 + 118236879 118236919 41 TTACTATGATCTGTAGGAATCTGGATATCATTGACAAAATA TTACTATGATCTGTAGGAATCTGTATATCATTGACAAAATA < 41bp 0.786359283649309 0.474610347568967 0.27605772 0.12727836 prediction 0.572718567298618 Functional Loss - PNLIPRP3 ENSG00000203837 UTR3 Human protein_coding chr10:118236899 chr10:118236902 . . 0 24 hm5C_associated_SNPs_56773 0 0 0 1 118236883 118236906 mRNA hsa-miR-361-5p PNLIPRP3 miRanda miRanda
5129 chr10 21962689 21962689 1 + G T LUAD 21962686 + 21962666 21962706 41 GACCCAAAGGAAACAAAAATCAAGAGAATGTTTCTCATCTC GACCCAAAGGAAACAAAAATCAATAGAATGTTTCTCATCTC < 41bp 0.851551642320927 0.565198117276597 0.8366364 0.3864255 prediction 0.57270705008866 Functional Loss - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:21962686 chr10:21962689 stopgain 1.000 1 24 hm5C_associated_SNPs_56776 0 0 1 3 21962685 21962707 mRNA hsa-miR-143 MLLT10 miRanda miRanda
5130 chr10 21962689 21962689 1 + G T LUAD 21962686 + 21962666 21962706 41 GACCCAAAGGAAACAAAAATCAAGAGAATGTTTCTCATCTC GACCCAAAGGAAACAAAAATCAATAGAATGTTTCTCATCTC < 41bp 0.851551642320927 0.565198117276597 0.8366364 0.3864255 prediction 0.57270705008866 Functional Loss - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:21962686 chr10:21962689 stopgain 1.000 1 24 hm5C_associated_SNPs_56776 0 0 1 3 21962679 21962700 mRNA hsa-miR-494 MLLT10 miRanda miRanda
5131 chr10 21962689 21962689 1 + G T LUAD 21962686 + 21962666 21962706 41 GACCCAAAGGAAACAAAAATCAAGAGAATGTTTCTCATCTC GACCCAAAGGAAACAAAAATCAATAGAATGTTTCTCATCTC < 41bp 0.851551642320927 0.565198117276597 0.8366364 0.3864255 prediction 0.57270705008866 Functional Loss - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:21962686 chr10:21962689 stopgain 1.000 1 24 hm5C_associated_SNPs_56776 0 0 1 3 21962679 21962698 mRNA hsa-miR-543 MLLT10 miRanda miRanda
5132 chr1 114516288 114516288 1 + G T rs138392484 114516286 + 114516266 114516306 41 CTGAAGCAGAAGGTTTTTCTCTGGGGGAACCTGTCTCAGTG CTGAAGCAGAAGGTTTTTCTCTTGGGGAACCTGTCTCAGTG < 41bp 0.846696624911899 0.560570808215507 0.9397058 0.8934196 prediction 0.572251633392784 Functional Loss - HIPK1 ENSG00000163349 UTR3 Human protein_coding chr1:114516286 chr1:114516288 . . 0 23 hm5C_associated_SNPs_56823 0 0 1 2 114516286 114516309 mRNA hsa-miR-141 HIPK1 miRanda miRanda
5133 chr1 114516288 114516288 1 + G T rs138392484 114516286 + 114516266 114516306 41 CTGAAGCAGAAGGTTTTTCTCTGGGGGAACCTGTCTCAGTG CTGAAGCAGAAGGTTTTTCTCTTGGGGAACCTGTCTCAGTG < 41bp 0.846696624911899 0.560570808215507 0.9397058 0.8934196 prediction 0.572251633392784 Functional Loss - HIPK1 ENSG00000163349 UTR3 Human protein_coding chr1:114516286 chr1:114516288 . . 0 23 hm5C_associated_SNPs_56823 0 0 1 2 114516286 114516309 mRNA hsa-miR-200a HIPK1 miRanda miRanda
5134 chr11 105804580 105804580 1 + G T HNSC 105804577 + 105804557 105804597 41 AGGGCAAATTTGCCTTTCTCCTGGAGTCCACTATGAATGAA AGGGCAAATTTGCCTTTCTCCTGTAGTCCACTATGAATGAA < 41bp 0.86463754589859 0.578877514226871 0.4200518 0.0465461 prediction 0.571520063343439 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105804577 chr11:105804580 stopgain 1.000 1 24 hm5C_associated_SNPs_56886 0 0 0 6 105804575 105804597 mRNA hsa-miR-181a GRIA4 miRanda miRanda
5135 chr11 105804580 105804580 1 + G T HNSC 105804577 + 105804557 105804597 41 AGGGCAAATTTGCCTTTCTCCTGGAGTCCACTATGAATGAA AGGGCAAATTTGCCTTTCTCCTGTAGTCCACTATGAATGAA < 41bp 0.86463754589859 0.578877514226871 0.4200518 0.0465461 prediction 0.571520063343439 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105804577 chr11:105804580 stopgain 1.000 1 24 hm5C_associated_SNPs_56886 0 0 0 6 105804575 105804597 mRNA hsa-miR-181b GRIA4 miRanda miRanda
5136 chr11 105804580 105804580 1 + G T HNSC 105804577 + 105804557 105804597 41 AGGGCAAATTTGCCTTTCTCCTGGAGTCCACTATGAATGAA AGGGCAAATTTGCCTTTCTCCTGTAGTCCACTATGAATGAA < 41bp 0.86463754589859 0.578877514226871 0.4200518 0.0465461 prediction 0.571520063343439 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105804577 chr11:105804580 stopgain 1.000 1 24 hm5C_associated_SNPs_56886 0 0 0 6 105804576 105804597 mRNA hsa-miR-181c GRIA4 miRanda miRanda
5137 chr11 105804580 105804580 1 + G T HNSC 105804577 + 105804557 105804597 41 AGGGCAAATTTGCCTTTCTCCTGGAGTCCACTATGAATGAA AGGGCAAATTTGCCTTTCTCCTGTAGTCCACTATGAATGAA < 41bp 0.86463754589859 0.578877514226871 0.4200518 0.0465461 prediction 0.571520063343439 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105804577 chr11:105804580 stopgain 1.000 1 24 hm5C_associated_SNPs_56886 0 0 0 6 105804575 105804593 mRNA hsa-miR-376a GRIA4 miRanda miRanda
5138 chr11 105804580 105804580 1 + G T HNSC 105804577 + 105804557 105804597 41 AGGGCAAATTTGCCTTTCTCCTGGAGTCCACTATGAATGAA AGGGCAAATTTGCCTTTCTCCTGTAGTCCACTATGAATGAA < 41bp 0.86463754589859 0.578877514226871 0.4200518 0.0465461 prediction 0.571520063343439 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105804577 chr11:105804580 stopgain 1.000 1 24 hm5C_associated_SNPs_56886 0 0 0 6 105804574 105804593 mRNA hsa-miR-376b GRIA4 miRanda miRanda
5139 chr11 105804580 105804580 1 + G T HNSC 105804577 + 105804557 105804597 41 AGGGCAAATTTGCCTTTCTCCTGGAGTCCACTATGAATGAA AGGGCAAATTTGCCTTTCTCCTGTAGTCCACTATGAATGAA < 41bp 0.86463754589859 0.578877514226871 0.4200518 0.0465461 prediction 0.571520063343439 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105804577 chr11:105804580 stopgain 1.000 1 24 hm5C_associated_SNPs_56886 0 0 0 6 105804575 105804597 mRNA hsa-miR-181d GRIA4 miRanda miRanda
5140 chr7 560394 560394 1 + G T rs112747040 560391 + 560371 560411 41 CGCGGAGGCCGAGGTCTGAGCGTGGCTAGACGGCTCCCACG CGCGGAGGCCGAGGTCTGAGCGTTGCTAGACGGCTCCCACG < 41bp 0.785622453415854 0.417281933375081 0.90362644 0.718522 prediction 0.571244906831708 Functional Loss - HRAT92 ENSG00000223855 ncRNA_exonic Human lincRNA chr7:560391 chr7:560394 . . 0 24 hm5C_associated_SNPs_56915 0 0 0 1 560374 560394 lncRNA hsa-miR-574-3p AC147651.1 miRanda starBase2
5141 chr16 87678385 87678385 1 + G C SARC 87678384 + 87678364 87678404 41 GACAAACGCTCCGGCTTCGGCGTGAGCCAGCGCTCGGACGG GACAAACGCTCCGGCTTCGGCCTGAGCCAGCGCTCGGACGG < 41bp 0.822349447491088 0.537294830247811 0.48549104 0.31834564 prediction 0.570109234486553 Functional Loss - JPH3 ENSG00000154118 CDS Human protein_coding chr16:87678384 chr16:87678385 nonsynonymous SNV 0.944 2 22 hm5C_associated_SNPs_57029 0 0 0 2 87678373 87678394 mRNA hsa-miR-149 JPH3 miRanda miRanda
5142 chr16 87678385 87678385 1 + G C SARC 87678384 + 87678364 87678404 41 GACAAACGCTCCGGCTTCGGCGTGAGCCAGCGCTCGGACGG GACAAACGCTCCGGCTTCGGCCTGAGCCAGCGCTCGGACGG < 41bp 0.822349447491088 0.537294830247811 0.48549104 0.31834564 prediction 0.570109234486553 Functional Loss - JPH3 ENSG00000154118 CDS Human protein_coding chr16:87678384 chr16:87678385 nonsynonymous SNV 0.944 2 22 hm5C_associated_SNPs_57029 0 0 0 2 87678379 87678401 mRNA hsa-miR-615-3p JPH3 miRanda miRanda
5143 chr5 70672131 70672131 1 + G T LUAD 70672128 + 70672108 70672148 41 CTTCAGCACTCAGATGTATGCTGGGAAGAGTCTACCAACGT CTTCAGCACTCAGATGTATGCTGTGAAGAGTCTACCAACGT < 41bp 0.785033960234364 0.452558781818868 0.27750295 0.04581538 prediction 0.570067920468728 Functional Loss - PMCHL2 ENSG00000169040 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:70672128 chr5:70672131 . . 0 24 hm5C_associated_SNPs_57035 0 0 0 2 70672124 70672144 mRNA hsa-miR-379 PMCHL2 miRanda miRanda
5144 chr5 70672131 70672131 1 + G T LUAD 70672128 + 70672108 70672148 41 CTTCAGCACTCAGATGTATGCTGGGAAGAGTCTACCAACGT CTTCAGCACTCAGATGTATGCTGTGAAGAGTCTACCAACGT < 41bp 0.785033960234364 0.452558781818868 0.27750295 0.04581538 prediction 0.570067920468728 Functional Loss - PMCHL2 ENSG00000169040 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:70672128 chr5:70672131 . . 0 24 hm5C_associated_SNPs_57035 0 0 0 2 70672114 70672132 mRNA hsa-miR-338-3p PMCHL2 miRanda miRanda
5145 chr5 70672130 70672130 1 + G T LUAD 70672128 + 70672108 70672148 41 CTTCAGCACTCAGATGTATGCTGGGAAGAGTCTACCAACGT CTTCAGCACTCAGATGTATGCTTGGAAGAGTCTACCAACGT < 41bp 0.785033960234364 0.490774701859383 0.27750295 0.050143123 prediction 0.570067920468728 Functional Loss - PMCHL2 ENSG00000169040 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:70672128 chr5:70672130 . . 0 23 hm5C_associated_SNPs_57036 0 0 0 2 70672124 70672144 mRNA hsa-miR-379 PMCHL2 miRanda miRanda
5146 chr5 70672130 70672130 1 + G T LUAD 70672128 + 70672108 70672148 41 CTTCAGCACTCAGATGTATGCTGGGAAGAGTCTACCAACGT CTTCAGCACTCAGATGTATGCTTGGAAGAGTCTACCAACGT < 41bp 0.785033960234364 0.490774701859383 0.27750295 0.050143123 prediction 0.570067920468728 Functional Loss - PMCHL2 ENSG00000169040 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:70672128 chr5:70672130 . . 0 23 hm5C_associated_SNPs_57036 0 0 0 2 70672114 70672132 mRNA hsa-miR-338-3p PMCHL2 miRanda miRanda
5147 chr19 45572367 45572367 1 + G T UCEC 45572365 + 45572345 45572385 41 CACAAGAAAAGATGATCCAGCAGGAGCATGAGCGGCAGGTG CACAAGAAAAGATGATCCAGCATGAGCATGAGCGGCAGGTG < 41bp 0.86026250387603 0.575398729525264 0.8807386 0.07848254 prediction 0.569727548701531 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45572365 chr19:45572367 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57069 0 0 1 1 45572348 45572369 mRNA hsa-miR-370 SFRS16 miRanda miRanda
5148 chr8 124113152 124113152 1 + G T OV 124113150 + 124113130 124113170 41 CGATGAAGGAATTAGCTCATCAGCAATTAGCCCACATGGAC CGATGAAGGAATTAGCTCATCATCAATTAGCCCACATGGAC < 41bp 0.784772679011434 0.471263446393916 0.21580592 0.03601876 prediction 0.569545358022868 Functional Loss - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124113150 chr8:124113152 nonsynonymous SNV 0.962 0 23 hm5C_associated_SNPs_57082 0 0 1 1 124113146 124113167 mRNA hsa-miR-299-3p WDR67 miRanda miRanda
5149 chr17 53851197 53851197 1 + G T LUSC 53851195 + 53851175 53851215 41 GGCGAGAGGTCTGGGGTGATCCGGGTGAAGCAATACAAGCA GGCGAGAGGTCTGGGGTGATCCTGGTGAAGCAATACAAGCA < 41bp 0.861145654969477 0.57656751920521 0.9380989 0.8500122 prediction 0.569156271528534 Functional Loss - PCTP ENSG00000141179 CDS Human protein_coding chr17:53851195 chr17:53851197 nonsynonymous SNV 0.935 5 23 hm5C_associated_SNPs_57108 0 0 1 1 53851188 53851210 mRNA hsa-miR-137 PCTP miRanda miRanda
5150 chr1 212792891 212792891 1 + G T UCEC 212792889 + 212792869 212792909 41 AGATAAAAGAAGGAACATTGCAGAGCTAAGCAGTCGTGGTA AGATAAAAGAAGGAACATTGCATAGCTAAGCAGTCGTGGTA < 41bp 0.784350301342645 0.456374373719754 0.8859207 0.43041402 prediction 0.56870060268529 Functional Loss - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212792889 chr1:212792891 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_57145 0 0 1 1 212792873 212792894 mRNA hsa-miR-544 ATF3 miRanda miRanda
5151 chr17 18638692 18638692 1 + G T LIHC 18638689 + 18638669 18638709 41 TATGCTGCCTTCTGGCTTTCCAAGAAGGAAAACGCCATCCG TATGCTGCCTTCTGGCTTTCCAATAAGGAAAACGCCATCCG < 41bp 0.892220390290177 0.608049060949499 0.33515868 0.0761852 prediction 0.568342658681357 Functional Loss - TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18638689 chr17:18638692 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_57169 0 0 0 1 18638684 18638707 mRNA hsa-miR-135b TRIM16L miRanda miRanda
5152 chr19 13084371 13084371 1 + G T UCEC 13084369 + 13084349 13084389 41 CGTGGTCCTGTGGTGTCTCACTGGCAGCTCAGCCTCCCGTC CGTGGTCCTGTGGTGTCTCACTTGCAGCTCAGCCTCCCGTC < 41bp 0.859786838169439 0.57572022159066 0.3147117 0.031792104 prediction 0.568133233157559 Functional Loss - DAND5 ENSG00000179284 CDS Human protein_coding chr19:13084369 chr19:13084371 nonsynonymous SNV 0.004 3 23 hm5C_associated_SNPs_57182 0 0 1 1 13084358 13084378 mRNA hsa-miR-22 DAND5 miRanda miRanda
5153 chr8 10387120 10387120 1 + G T OV 10387118 + 10387098 10387138 41 TTCCGTGGCAGGTGAGTATTCAGGCAAGAAGTGAACCTTTC TTCCGTGGCAGGTGAGTATTCATGCAAGAAGTGAACCTTTC < 41bp 0.783894155565143 0.439893306165099 0.88489753 0.3956099 prediction 0.567788311130287 Functional Loss - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10387118 chr8:10387120 nonsynonymous SNV 0.918 3 23 hm5C_associated_SNPs_57222 0 0 0 1 10387099 10387122 mRNA hsa-miR-486-5p PRSS55 miRanda miRanda
5154 chr5 140021618 140021618 1 + A T LUAD 140021614 + 140021594 140021634 41 TCTTACCTCCTCACCTACCTCTCCAGTCACAGCTCAGACTT TCTTACCTCCTCACCTACCTCTCCTGTCACAGCTCAGACTT < 41bp 0.862100650390277 0.578362722622271 0.9514621 0.06306553 prediction 0.567475855536011 Functional Loss - TMCO6 ENSG00000113119 CDS Human protein_coding chr5:140021614 chr5:140021618 nonsynonymous SNV 0.940 1 25 hm5C_associated_SNPs_57263 0 0 1 2 140021603 140021624 mRNA hsa-miR-134 TMCO6 miRanda miRanda
5155 chr5 140021618 140021618 1 + A T LUAD 140021614 + 140021594 140021634 41 TCTTACCTCCTCACCTACCTCTCCAGTCACAGCTCAGACTT TCTTACCTCCTCACCTACCTCTCCTGTCACAGCTCAGACTT < 41bp 0.862100650390277 0.578362722622271 0.9514621 0.06306553 prediction 0.567475855536011 Functional Loss - TMCO6 ENSG00000113119 CDS Human protein_coding chr5:140021614 chr5:140021618 nonsynonymous SNV 0.940 1 25 hm5C_associated_SNPs_57263 0 0 1 2 140021597 140021618 mRNA hsa-miR-185 TMCO6 miRanda miRanda
5156 chr3 100170663 100170663 1 + G T UCEC 100170661 + 100170641 100170681 41 CGTAGCCACGTACGGGATTACAGAAAATACTCAGAGGATGG CGTAGCCACGTACGGGATTACATAAAATACTCAGAGGATGG < 41bp 0.783637724938176 0.453280268088946 0.29756105 0.15959698 prediction 0.567275449876352 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100170661 chr3:100170663 nonsynonymous SNV 0.075 4 23 hm5C_associated_SNPs_57280 0 0 0 1 100170654 100170673 mRNA hsa-miR-496 LNP1 miRanda miRanda
5157 chr2 37473261 37473261 1 + C T CESC 37473259 + 37473239 37473279 41 TGTTATCATCGAGGAACTTTCTCAACGCATTGCATTAACTG TGTTATCATCGAGGAACTTTCTTAACGCATTGCATTAACTG < 41bp 0.783696202904319 0.500259870390433 0.12303713 0.09318733 prediction 0.566872665027773 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37473259 chr2:37473261 stopgain 0.848 0 23 hm5C_associated_SNPs_57322 0 0 1 1 37473260 37473282 mRNA hsa-miR-145 C2orf56 miRanda miRanda
5158 chr16 87678385 87678385 1 + G C SARC 87678381 + 87678361 87678401 41 AACGACAAACGCTCCGGCTTCGGCGTGAGCCAGCGCTCGGA AACGACAAACGCTCCGGCTTCGGCCTGAGCCAGCGCTCGGA < 41bp 0.791467416081966 0.508945661113943 0.8749064 0.50086576 prediction 0.565043509936046 Functional Loss - JPH3 ENSG00000154118 CDS Human protein_coding chr16:87678381 chr16:87678385 nonsynonymous SNV 0.944 2 25 hm5C_associated_SNPs_57476 0 0 0 2 87678373 87678394 mRNA hsa-miR-149 JPH3 miRanda miRanda
5159 chr16 87678385 87678385 1 + G C SARC 87678381 + 87678361 87678401 41 AACGACAAACGCTCCGGCTTCGGCGTGAGCCAGCGCTCGGA AACGACAAACGCTCCGGCTTCGGCCTGAGCCAGCGCTCGGA < 41bp 0.791467416081966 0.508945661113943 0.8749064 0.50086576 prediction 0.565043509936046 Functional Loss - JPH3 ENSG00000154118 CDS Human protein_coding chr16:87678381 chr16:87678385 nonsynonymous SNV 0.944 2 25 hm5C_associated_SNPs_57476 0 0 0 2 87678379 87678401 mRNA hsa-miR-615-3p JPH3 miRanda miRanda
5160 chr9 32431832 32431832 1 + G T UCEC 32431830 + 32431810 32431850 41 GGATGTTTAAGGAAGTCTATCAGAAAATAGAGGTGAGGTCC GGATGTTTAAGGAAGTCTATCATAAAATAGAGGTGAGGTCC < 41bp 0.782456908729082 0.4498047637456 0.8359215 0.41201258 prediction 0.564913817458164 Functional Loss - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32431830 chr9:32431832 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_57488 0 0 1 2 32431829 32431841 mRNA hsa-miR-27a ACO1 miRanda miRanda
5161 chr9 32431832 32431832 1 + G T UCEC 32431830 + 32431810 32431850 41 GGATGTTTAAGGAAGTCTATCAGAAAATAGAGGTGAGGTCC GGATGTTTAAGGAAGTCTATCATAAAATAGAGGTGAGGTCC < 41bp 0.782456908729082 0.4498047637456 0.8359215 0.41201258 prediction 0.564913817458164 Functional Loss - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32431830 chr9:32431832 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_57488 0 0 1 2 32431829 32431841 mRNA hsa-miR-27b ACO1 miRanda miRanda
5162 chr12 107103144 107103144 1 + G T STAD 107103142 + 107103122 107103162 41 TTCGAAAGTTTGCCAAGCAACTGGATGAGTGGCTAAAAGTG TTCGAAAGTTTGCCAAGCAACTTGATGAGTGGCTAAAAGTG < 41bp 0.848522625293812 0.566184456228765 0.56875134 0.3003707 prediction 0.564676338130094 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107103142 chr12:107103144 synonymous SNV . 0 23 hm5C_associated_SNPs_57504 0 0 0 1 107103123 107103147 mRNA hsa-miR-145 RFX4 miRanda miRanda
5163 chr3 38566902 38566902 1 + G T rs79750058 38566900 + 38566880 38566920 41 GCATGCTTGGCAAGAAGAGTCTGGTTTCTCGTCTGCTATGC GCATGCTTGGCAAGAAGAGTCTTGTTTCTCGTCTGCTATGC < 41bp 0.785342611720579 0.503571406374632 0.60196024 0.3139735 prediction 0.563542410691894 Functional Loss - EXOG ENSG00000157036 UTR3 Human protein_coding chr3:38566900 chr3:38566902 . . 0 23 hm5C_associated_SNPs_57597 0 0 1 2 38566902 38566922 mRNA hsa-miR-153 EXOG miRanda miRanda
5164 chr3 38566902 38566902 1 + G T rs79750058 38566900 + 38566880 38566920 41 GCATGCTTGGCAAGAAGAGTCTGGTTTCTCGTCTGCTATGC GCATGCTTGGCAAGAAGAGTCTTGTTTCTCGTCTGCTATGC < 41bp 0.785342611720579 0.503571406374632 0.60196024 0.3139735 prediction 0.563542410691894 Functional Loss - EXOG ENSG00000157036 UTR3 Human protein_coding chr3:38566900 chr3:38566902 . . 0 23 hm5C_associated_SNPs_57597 0 0 1 2 38566891 38566917 mRNA hsa-miR-503 EXOG miRanda miRanda
5165 chr4 48852020 48852020 1 + G T LUSC 48852017 + 48851997 48852037 41 TTTCTTATGTGAAAACTTGCCAAGAGAAATTCAAGAAACTT TTTCTTATGTGAAAACTTGCCAATAGAAATTCAAGAAACTT < 41bp 0.781451973531791 0.425489488136201 0.30022037 0.04212767 prediction 0.562903947063582 Functional Loss - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48852017 chr4:48852020 stopgain 1.000 1 24 hm5C_associated_SNPs_57651 0 0 1 3 48852019 48852040 mRNA hsa-miR-26a OCIAD1 miRanda miRanda
5166 chr4 48852020 48852020 1 + G T LUSC 48852017 + 48851997 48852037 41 TTTCTTATGTGAAAACTTGCCAAGAGAAATTCAAGAAACTT TTTCTTATGTGAAAACTTGCCAATAGAAATTCAAGAAACTT < 41bp 0.781451973531791 0.425489488136201 0.30022037 0.04212767 prediction 0.562903947063582 Functional Loss - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48852017 chr4:48852020 stopgain 1.000 1 24 hm5C_associated_SNPs_57651 0 0 1 3 48852020 48852040 mRNA hsa-miR-26b OCIAD1 miRanda miRanda
5167 chr4 48852020 48852020 1 + G T LUSC 48852017 + 48851997 48852037 41 TTTCTTATGTGAAAACTTGCCAAGAGAAATTCAAGAAACTT TTTCTTATGTGAAAACTTGCCAATAGAAATTCAAGAAACTT < 41bp 0.781451973531791 0.425489488136201 0.30022037 0.04212767 prediction 0.562903947063582 Functional Loss - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48852017 chr4:48852020 stopgain 1.000 1 24 hm5C_associated_SNPs_57651 0 0 1 3 48851997 48852020 mRNA hsa-miR-182 OCIAD1 miRanda miRanda
5168 chr20 32371618 32371618 1 + G T UCEC 32371615 + 32371595 32371635 41 AGGTTCAAGTGCCAAGTGTGCAAGAAGTTCTTCCGGCGGGA AGGTTCAAGTGCCAAGTGTGCAATAAGTTCTTCCGGCGGGA < 41bp 0.781373684306466 0.390409857825908 0.392384 0.17034224 prediction 0.562747368612931 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32371615 chr20:32371618 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_57663 0 0 0 1 32371599 32371621 mRNA hsa-miR-544 ZNF341 miRanda miRanda
5169 chr10 71020967 71020967 1 + G T LIHC 71020965 + 71020945 71020985 41 TCCTGATCGACCTGACCAAGCAGGGTCTCCTCTTCCGAGGG TCCTGATCGACCTGACCAAGCATGGTCTCCTCTTCCGAGGG < 41bp 0.87597137366967 0.594842883058079 0.930128 0.32854283 prediction 0.562256981223182 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71020965 chr10:71020967 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_57702 0 0 0 1 71020952 71020972 mRNA hsa-miR-504 HKDC1 miRanda miRanda
5170 chr6 53787638 53787638 1 + G T rs41273890 53787635 + 53787615 53787655 41 CCTGTGTCTTCCTCTGCTGTCGAGACGTTCCTGTCTGCTTC CCTGTGTCTTCCTCTGCTGTCGATACGTTCCTGTCTGCTTC < 41bp 0.781056501402006 0.41378544234289 0.8780922 0.096063524 prediction 0.562113002804011 Functional Loss - LRRC1 ENSG00000137269 UTR3 Human protein_coding chr6:53787635 chr6:53787638 . . 0 24 hm5C_associated_SNPs_57710 0 0 1 1 53787627 53787648 mRNA hsa-miR-873 LRRC1 miRanda miRanda
5171 chr5 180377187 180377187 1 + G T SKCM 180377185 + 180377165 180377205 41 ATGGGTACTGGGTCCTCAGACTGAATGGAGAACATTTGTAT ATGGGTACTGGGTCCTCAGACTTAATGGAGAACATTTGTAT < 41bp 0.815430860973896 0.534410645307353 0.14052978 0.16482908 prediction 0.562040431333087 Functional Loss - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180377185 chr5:180377187 synonymous SNV . 0 23 hm5C_associated_SNPs_57713 0 0 0 1 180377173 180377195 mRNA hsa-miR-136 BTNL8 miRanda miRanda
5172 chr8 30614366 30614366 1 + G T UCEC 30614364 + 30614344 30614384 41 GAACTTGCCTAAACCTTTAACTGAATTTCCGTCTCCTGCTG GAACTTGCCTAAACCTTTAACTTAATTTCCGTCTCCTGCTG < 41bp 0.780808673049171 0.477896628662125 0.17299592 0.13771632 prediction 0.561617346098342 Functional Loss - UBXN8 ENSG00000104691 ncRNA_exonic Human protein_coding chr8:30614364 chr8:30614366 . 0.001 0 23 hm5C_associated_SNPs_57750 0 0 1 1 30614363 30614385 mRNA hsa-miR-214 UBXN8 miRanda miRanda
5173 chr20 30418839 30418839 1 + A C COAD 30418835 + 30418815 30418855 41 GGTATAACCCCAACGAGAAGCTGAAGGTGAACTTTGGGACC GGTATAACCCCAACGAGAAGCTGACGGTGAACTTTGGGACC < 41bp 0.780759670210955 0.370187378669722 0.8964231 0.3503856 prediction 0.561519340421911 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30418835 chr20:30418839 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_57756 0 0 0 1 30418839 30418862 mRNA hsa-miR-330-5p MYLK2 miRanda miRanda
5174 chr19 58697164 58697164 1 + G T LGG 58697162 + 58697142 58697182 41 CTCAAACAGAAGTCCCTGTACAGGGAAGTGATGCTGGAGAA CTCAAACAGAAGTCCCTGTACATGGAAGTGATGCTGGAGAA < 41bp 0.816019391758509 0.535389148886847 0.81262934 0.18827325 prediction 0.561260485743325 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58697162 chr19:58697164 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57776 0 0 1 2 58697159 58697179 mRNA hsa-miR-338-3p ZNF274 miRanda miRanda
5175 chr19 58697164 58697164 1 + G T LGG 58697162 + 58697142 58697182 41 CTCAAACAGAAGTCCCTGTACAGGGAAGTGATGCTGGAGAA CTCAAACAGAAGTCCCTGTACATGGAAGTGATGCTGGAGAA < 41bp 0.816019391758509 0.535389148886847 0.81262934 0.18827325 prediction 0.561260485743325 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58697162 chr19:58697164 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_57776 0 0 1 2 58697144 58697166 mRNA hsa-miR-486-5p ZNF274 miRanda miRanda
5176 chr20 3893223 3893223 1 + G T UCEC 3893220 + 3893200 3893240 41 CCAAAGTGGATAAACTAGTACGAGATATTTATGGAGGGGAC CCAAAGTGGATAAACTAGTACGATATATTTATGGAGGGGAC < 41bp 0.780530741239871 0.400484072105834 0.8921528 0.40907645 prediction 0.561061482479742 Functional Loss - PANK2 ENSG00000125779 CDS Human protein_coding chr20:3893220 chr20:3893223 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_57809 0 0 1 1 3893203 3893224 mRNA hsa-miR-487b PANK2 miRanda miRanda
5177 chr3 119242511 119242511 1 + G T OV 119242508 + 119242488 119242528 41 AGAAAATTGAAAGTAGTTTACAGGAAGATGAACCTGAGAAT AGAAAATTGAAAGTAGTTTACAGTAAGATGAACCTGAGAAT < 41bp 0.882218235009191 0.60171412319537 0.683679 0.10395789 prediction 0.561008223627643 Functional Loss - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119242508 chr3:119242511 stopgain 0.077 0 24 hm5C_associated_SNPs_57817 0 0 1 1 119242491 119242512 mRNA hsa-miR-486-5p C3orf1 miRanda miRanda
5178 chr1 212788549 212788549 1 + G T HNSC 212788547 + 212788527 212788567 41 GCCACCGGATGTCCTCTGCGCTGGAATCAGTCACTGTCAGC GCCACCGGATGTCCTCTGCGCTTGAATCAGTCACTGTCAGC < 41bp 0.857799075235127 0.577412043466409 0.42895412 0.2579612 prediction 0.560774063537435 Functional Loss - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212788547 chr1:212788549 synonymous SNV . 0 23 hm5C_associated_SNPs_57837 0 0 1 2 212788547 212788567 mRNA hsa-miR-139-5p ATF3 miRanda miRanda
5179 chr1 212788549 212788549 1 + G T HNSC 212788547 + 212788527 212788567 41 GCCACCGGATGTCCTCTGCGCTGGAATCAGTCACTGTCAGC GCCACCGGATGTCCTCTGCGCTTGAATCAGTCACTGTCAGC < 41bp 0.857799075235127 0.577412043466409 0.42895412 0.2579612 prediction 0.560774063537435 Functional Loss - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212788547 chr1:212788549 synonymous SNV . 0 23 hm5C_associated_SNPs_57837 0 0 1 2 212788537 212788561 mRNA hsa-miR-134 ATF3 miRanda miRanda
5180 chr2 128409348 128409348 1 + G T rs533564833 128409345 + 128409325 128409365 41 TGTGAGCGGGGGGCGCCGTCCAGGCCGAGCGCAGACTGTTT TGTGAGCGGGGGGCGCCGTCCAGTCCGAGCGCAGACTGTTT < 41bp 0.780243604771652 0.405170672838457 0.3513085 0.021532863 prediction 0.560487209543304 Functional Loss - GPR17 ENSG00000144230 UTR3 Human protein_coding chr2:128409345 chr2:128409348 . . 0 24 hm5C_associated_SNPs_57866 0 0 0 2 128409345 128409365 mRNA hsa-miR-212 GPR17 miRanda miRanda
5181 chr2 128409348 128409348 1 + G T rs533564833 128409345 + 128409325 128409365 41 TGTGAGCGGGGGGCGCCGTCCAGGCCGAGCGCAGACTGTTT TGTGAGCGGGGGGCGCCGTCCAGTCCGAGCGCAGACTGTTT < 41bp 0.780243604771652 0.405170672838457 0.3513085 0.021532863 prediction 0.560487209543304 Functional Loss - GPR17 ENSG00000144230 UTR3 Human protein_coding chr2:128409345 chr2:128409348 . . 0 24 hm5C_associated_SNPs_57866 0 0 0 2 128409345 128409365 mRNA hsa-miR-132 GPR17 miRanda miRanda
5182 chr16 71674559 71674559 1 + G T PRAD 71674556 + 71674536 71674576 41 TCACCATGGGTGTTTTACTCCAAGGAGCCAAGAGTCGAACA TCACCATGGGTGTTTTACTCCAATGAGCCAAGAGTCGAACA < 41bp 0.780133498263633 0.400155234253522 0.3998549 0.047038317 prediction 0.560266996527265 Functional Loss - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71674556 chr16:71674559 stopgain 0.820 1 24 hm5C_associated_SNPs_57884 0 0 0 1 71674554 71674578 mRNA hsa-miR-375 MARVELD3 miRanda miRanda
5183 chr2 202744829 202744829 1 + G T UCEC 202744827 + 202744807 202744847 41 CCAGAGACCGCGTCTCCGCCCAGGAAGCACTTGTTCATGAT CCAGAGACCGCGTCTCCGCCCATGAAGCACTTGTTCATGAT < 41bp 0.858418795558741 0.578410356545183 0.19498667 0.04996285 prediction 0.560016878027116 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202744827 chr2:202744829 nonsynonymous SNV 0.918 0 23 hm5C_associated_SNPs_57910 0 0 0 12 202744818 202744839 mRNA hsa-miR-302a CDK15 miRanda miRanda
5184 chr2 202744829 202744829 1 + G T UCEC 202744827 + 202744807 202744847 41 CCAGAGACCGCGTCTCCGCCCAGGAAGCACTTGTTCATGAT CCAGAGACCGCGTCTCCGCCCATGAAGCACTTGTTCATGAT < 41bp 0.858418795558741 0.578410356545183 0.19498667 0.04996285 prediction 0.560016878027116 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202744827 chr2:202744829 nonsynonymous SNV 0.918 0 23 hm5C_associated_SNPs_57910 0 0 0 12 202744817 202744839 mRNA hsa-miR-302b CDK15 miRanda miRanda
5185 chr2 202744829 202744829 1 + G T UCEC 202744827 + 202744807 202744847 41 CCAGAGACCGCGTCTCCGCCCAGGAAGCACTTGTTCATGAT CCAGAGACCGCGTCTCCGCCCATGAAGCACTTGTTCATGAT < 41bp 0.858418795558741 0.578410356545183 0.19498667 0.04996285 prediction 0.560016878027116 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202744827 chr2:202744829 nonsynonymous SNV 0.918 0 23 hm5C_associated_SNPs_57910 0 0 0 12 202744817 202744839 mRNA hsa-miR-302c CDK15 miRanda miRanda
5186 chr2 202744829 202744829 1 + G T UCEC 202744827 + 202744807 202744847 41 CCAGAGACCGCGTCTCCGCCCAGGAAGCACTTGTTCATGAT CCAGAGACCGCGTCTCCGCCCATGAAGCACTTGTTCATGAT < 41bp 0.858418795558741 0.578410356545183 0.19498667 0.04996285 prediction 0.560016878027116 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202744827 chr2:202744829 nonsynonymous SNV 0.918 0 23 hm5C_associated_SNPs_57910 0 0 0 12 202744817 202744839 mRNA hsa-miR-302d CDK15 miRanda miRanda
5187 chr2 202744829 202744829 1 + G T UCEC 202744827 + 202744807 202744847 41 CCAGAGACCGCGTCTCCGCCCAGGAAGCACTTGTTCATGAT CCAGAGACCGCGTCTCCGCCCATGAAGCACTTGTTCATGAT < 41bp 0.858418795558741 0.578410356545183 0.19498667 0.04996285 prediction 0.560016878027116 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202744827 chr2:202744829 nonsynonymous SNV 0.918 0 23 hm5C_associated_SNPs_57910 0 0 0 12 202744817 202744839 mRNA hsa-miR-372 CDK15 miRanda miRanda
5188 chr2 202744829 202744829 1 + G T UCEC 202744827 + 202744807 202744847 41 CCAGAGACCGCGTCTCCGCCCAGGAAGCACTTGTTCATGAT CCAGAGACCGCGTCTCCGCCCATGAAGCACTTGTTCATGAT < 41bp 0.858418795558741 0.578410356545183 0.19498667 0.04996285 prediction 0.560016878027116 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202744827 chr2:202744829 nonsynonymous SNV 0.918 0 23 hm5C_associated_SNPs_57910 0 0 0 12 202744817 202744839 mRNA hsa-miR-373 CDK15 miRanda miRanda
5189 chr2 202744829 202744829 1 + G T UCEC 202744827 + 202744807 202744847 41 CCAGAGACCGCGTCTCCGCCCAGGAAGCACTTGTTCATGAT CCAGAGACCGCGTCTCCGCCCATGAAGCACTTGTTCATGAT < 41bp 0.858418795558741 0.578410356545183 0.19498667 0.04996285 prediction 0.560016878027116 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202744827 chr2:202744829 nonsynonymous SNV 0.918 0 23 hm5C_associated_SNPs_57910 0 0 0 12 202744819 202744839 mRNA hsa-miR-520e CDK15 miRanda miRanda
5190 chr2 202744829 202744829 1 + G T UCEC 202744827 + 202744807 202744847 41 CCAGAGACCGCGTCTCCGCCCAGGAAGCACTTGTTCATGAT CCAGAGACCGCGTCTCCGCCCATGAAGCACTTGTTCATGAT < 41bp 0.858418795558741 0.578410356545183 0.19498667 0.04996285 prediction 0.560016878027116 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202744827 chr2:202744829 nonsynonymous SNV 0.918 0 23 hm5C_associated_SNPs_57910 0 0 0 12 202744818 202744839 mRNA hsa-miR-520a-3p CDK15 miRanda miRanda
5191 chr2 202744829 202744829 1 + G T UCEC 202744827 + 202744807 202744847 41 CCAGAGACCGCGTCTCCGCCCAGGAAGCACTTGTTCATGAT CCAGAGACCGCGTCTCCGCCCATGAAGCACTTGTTCATGAT < 41bp 0.858418795558741 0.578410356545183 0.19498667 0.04996285 prediction 0.560016878027116 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202744827 chr2:202744829 nonsynonymous SNV 0.918 0 23 hm5C_associated_SNPs_57910 0 0 0 12 202744819 202744839 mRNA hsa-miR-520b CDK15 miRanda miRanda
5192 chr2 202744829 202744829 1 + G T UCEC 202744827 + 202744807 202744847 41 CCAGAGACCGCGTCTCCGCCCAGGAAGCACTTGTTCATGAT CCAGAGACCGCGTCTCCGCCCATGAAGCACTTGTTCATGAT < 41bp 0.858418795558741 0.578410356545183 0.19498667 0.04996285 prediction 0.560016878027116 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202744827 chr2:202744829 nonsynonymous SNV 0.918 0 23 hm5C_associated_SNPs_57910 0 0 0 12 202744818 202744839 mRNA hsa-miR-520c-3p CDK15 miRanda miRanda
5193 chr2 202744829 202744829 1 + G T UCEC 202744827 + 202744807 202744847 41 CCAGAGACCGCGTCTCCGCCCAGGAAGCACTTGTTCATGAT CCAGAGACCGCGTCTCCGCCCATGAAGCACTTGTTCATGAT < 41bp 0.858418795558741 0.578410356545183 0.19498667 0.04996285 prediction 0.560016878027116 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202744827 chr2:202744829 nonsynonymous SNV 0.918 0 23 hm5C_associated_SNPs_57910 0 0 0 12 202744820 202744839 mRNA hsa-miR-520d-3p CDK15 miRanda miRanda
5194 chr2 202744829 202744829 1 + G T UCEC 202744827 + 202744807 202744847 41 CCAGAGACCGCGTCTCCGCCCAGGAAGCACTTGTTCATGAT CCAGAGACCGCGTCTCCGCCCATGAAGCACTTGTTCATGAT < 41bp 0.858418795558741 0.578410356545183 0.19498667 0.04996285 prediction 0.560016878027116 Functional Loss - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202744827 chr2:202744829 nonsynonymous SNV 0.918 0 23 hm5C_associated_SNPs_57910 0 0 0 12 202744824 202744839 mRNA hsa-miR-302e CDK15 miRanda miRanda
5195 chr3 63542272 63542272 1 + A C UCEC 63542268 + 63542248 63542288 41 CCTGCGAGGGAAAGGAACGGCAGAAGCTGGCATTGATTGGT CCTGCGAGGGAAAGGAACGGCAGACGCTGGCATTGATTGGT < 41bp 0.779786624577171 0.395285711769777 0.8311906 0.7378838 prediction 0.559573249154342 Functional Loss - SYNPR ENSG00000163630 CDS Human protein_coding chr3:63542268 chr3:63542272 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_57942 0 0 0 2 63542270 63542293 mRNA hsa-miR-29b SYNPR miRanda miRanda
5196 chr3 63542272 63542272 1 + A C UCEC 63542268 + 63542248 63542288 41 CCTGCGAGGGAAAGGAACGGCAGAAGCTGGCATTGATTGGT CCTGCGAGGGAAAGGAACGGCAGACGCTGGCATTGATTGGT < 41bp 0.779786624577171 0.395285711769777 0.8311906 0.7378838 prediction 0.559573249154342 Functional Loss - SYNPR ENSG00000163630 CDS Human protein_coding chr3:63542268 chr3:63542272 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_57942 0 0 0 2 63542271 63542293 mRNA hsa-miR-29c SYNPR miRanda miRanda
5197 chr19 9949166 9949166 1 + G T SARC 9949164 + 9949144 9949184 41 GCCAGCCAGTGGGAGCGGCCCAGCGGCAACAGCAGCAGTGG GCCAGCCAGTGGGAGCGGCCCATCGGCAACAGCAGCAGTGG < 41bp 0.865929458489974 0.586353085157574 0.5667837 0.20827246 prediction 0.559152746664798 Functional Loss - PIN1 ENSG00000127445 CDS Human protein_coding chr19:9949164 chr19:9949166 nonsynonymous SNV 0.684 0 23 hm5C_associated_SNPs_57980 0 0 1 1 9949150 9949172 mRNA hsa-miR-874 PIN1 miRanda miRanda
5198 chr15 25427429 25427429 1 + G T LUAD 25427427 + 25427407 25427447 41 GGTGTCCAGCCCCTGGTGCACTGAAGATCGGGCCCTTCCTG GGTGTCCAGCCCCTGGTGCACTTAAGATCGGGCCCTTCCTG < 41bp 0.779563483100527 0.462672130788923 0.19794554 0.33474302 prediction 0.559126966201055 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25427427 chr15:25427429 . . 0 23 hm5C_associated_SNPs_57987 0 0 0 3 25427409 25427430 mRNA hsa-miR-148a SNRPN miRanda miRanda
5199 chr15 25427429 25427429 1 + G T LUAD 25427427 + 25427407 25427447 41 GGTGTCCAGCCCCTGGTGCACTGAAGATCGGGCCCTTCCTG GGTGTCCAGCCCCTGGTGCACTTAAGATCGGGCCCTTCCTG < 41bp 0.779563483100527 0.462672130788923 0.19794554 0.33474302 prediction 0.559126966201055 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25427427 chr15:25427429 . . 0 23 hm5C_associated_SNPs_57987 0 0 0 3 25427410 25427430 mRNA hsa-miR-152 SNRPN miRanda miRanda
5200 chr15 25427429 25427429 1 + G T LUAD 25427427 + 25427407 25427447 41 GGTGTCCAGCCCCTGGTGCACTGAAGATCGGGCCCTTCCTG GGTGTCCAGCCCCTGGTGCACTTAAGATCGGGCCCTTCCTG < 41bp 0.779563483100527 0.462672130788923 0.19794554 0.33474302 prediction 0.559126966201055 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25427427 chr15:25427429 . . 0 23 hm5C_associated_SNPs_57987 0 0 0 3 25427409 25427430 mRNA hsa-miR-148b SNRPN miRanda miRanda
5201 chr15 92647732 92647732 1 + G T HNSC 92647730 + 92647710 92647750 41 ACGGGGTCCTGAGGCACCCCCTGGAGCCAGACAGCAGTGCC ACGGGGTCCTGAGGCACCCCCTTGAGCCAGACAGCAGTGCC < 41bp 0.856984206506772 0.577514973562764 0.47951648 0.08888182 prediction 0.558938465888016 Functional Loss - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92647730 chr15:92647732 synonymous SNV . 0 23 hm5C_associated_SNPs_58009 0 0 0 1 92647718 92647740 mRNA hsa-miR-149 SLCO3A1 miRanda miRanda
5202 chr2 122522729 122522729 1 + G T SARC 122522727 + 122522707 122522747 41 CAGTCGAGGCTGTCTGTCAACAGCGTGACTGCTGGAGACTA CAGTCGAGGCTGTCTGTCAACATCGTGACTGCTGGAGACTA < 41bp 0.85147022191175 0.572032616468854 0.8102621 0.22090587 prediction 0.558875210885791 Functional Loss - TSN ENSG00000211460 CDS Human protein_coding chr2:122522727 chr2:122522729 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_58018 0 0 1 2 122522721 122522742 mRNA hsa-miR-338-3p TSN miRanda miRanda
5203 chr2 122522729 122522729 1 + G T SARC 122522727 + 122522707 122522747 41 CAGTCGAGGCTGTCTGTCAACAGCGTGACTGCTGGAGACTA CAGTCGAGGCTGTCTGTCAACATCGTGACTGCTGGAGACTA < 41bp 0.85147022191175 0.572032616468854 0.8102621 0.22090587 prediction 0.558875210885791 Functional Loss - TSN ENSG00000211460 CDS Human protein_coding chr2:122522727 chr2:122522729 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_58018 0 0 1 2 122522719 122522740 mRNA hsa-miR-497 TSN miRanda miRanda
5204 chr7 34889256 34889256 1 + G T UCEC 34889254 + 34889234 34889274 41 GATGCAGATTCTGTCCAAGCCAGAATTCATCTAGACCCTAG GATGCAGATTCTGTCCAAGCCATAATTCATCTAGACCCTAG < 41bp 0.830171939652429 0.550746750479042 0.7398025 0.25456434 prediction 0.558850378346773 Functional Loss - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34889254 chr7:34889256 stopgain 0.698 0 23 hm5C_associated_SNPs_58023 0 0 0 3 34889235 34889257 mRNA hsa-miR-135a NPSR1 miRanda miRanda
5205 chr7 34889256 34889256 1 + G T UCEC 34889254 + 34889234 34889274 41 GATGCAGATTCTGTCCAAGCCAGAATTCATCTAGACCCTAG GATGCAGATTCTGTCCAAGCCATAATTCATCTAGACCCTAG < 41bp 0.830171939652429 0.550746750479042 0.7398025 0.25456434 prediction 0.558850378346773 Functional Loss - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34889254 chr7:34889256 stopgain 0.698 0 23 hm5C_associated_SNPs_58023 0 0 0 3 34889235 34889257 mRNA hsa-miR-149 NPSR1 miRanda miRanda
5206 chr7 34889256 34889256 1 + G T UCEC 34889254 + 34889234 34889274 41 GATGCAGATTCTGTCCAAGCCAGAATTCATCTAGACCCTAG GATGCAGATTCTGTCCAAGCCATAATTCATCTAGACCCTAG < 41bp 0.830171939652429 0.550746750479042 0.7398025 0.25456434 prediction 0.558850378346773 Functional Loss - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34889254 chr7:34889256 stopgain 0.698 0 23 hm5C_associated_SNPs_58023 0 0 0 3 34889235 34889257 mRNA hsa-miR-135b NPSR1 miRanda miRanda
5207 chr19 45562609 45562609 1 + G C LUAD 45562605 + 45562585 45562625 41 GCCACGACTTATGGCATGGCCGACGGTGACTTCGTCAGGTG GCCACGACTTATGGCATGGCCGACCGTGACTTCGTCAGGTG < 41bp 0.785184458499219 0.506036489817288 0.22593904 0.13410652 prediction 0.558295937363861 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45562605 chr19:45562609 nonsynonymous SNV 0.210 3 25 hm5C_associated_SNPs_58074 0 0 1 1 45562597 45562617 mRNA hsa-miR-224 SFRS16 miRanda miRanda
5208 chr12 21680708 21680708 1 + G C UCEC 21680707 + 21680687 21680727 41 AGCCGGAGAAAGGACCTCTCCGACCGGCCACTGCCGGGTGA AGCCGGAGAAAGGACCTCTCCCACCGGCCACTGCCGGGTGA < 41bp 0.779140807703576 0.473143670308652 0.23608947 0.13043109 prediction 0.558281615407151 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680707 chr12:21680708 nonsynonymous SNV 0.110 3 22 hm5C_associated_SNPs_58078 0 0 1 4 21680702 21680722 mRNA hsa-miR-34a C12orf39 miRanda miRanda
5209 chr12 21680708 21680708 1 + G C UCEC 21680707 + 21680687 21680727 41 AGCCGGAGAAAGGACCTCTCCGACCGGCCACTGCCGGGTGA AGCCGGAGAAAGGACCTCTCCCACCGGCCACTGCCGGGTGA < 41bp 0.779140807703576 0.473143670308652 0.23608947 0.13043109 prediction 0.558281615407151 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680707 chr12:21680708 nonsynonymous SNV 0.110 3 22 hm5C_associated_SNPs_58078 0 0 1 4 21680699 21680722 mRNA hsa-miR-34c-5p C12orf39 miRanda miRanda
5210 chr12 21680708 21680708 1 + G C UCEC 21680707 + 21680687 21680727 41 AGCCGGAGAAAGGACCTCTCCGACCGGCCACTGCCGGGTGA AGCCGGAGAAAGGACCTCTCCCACCGGCCACTGCCGGGTGA < 41bp 0.779140807703576 0.473143670308652 0.23608947 0.13043109 prediction 0.558281615407151 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680707 chr12:21680708 nonsynonymous SNV 0.110 3 22 hm5C_associated_SNPs_58078 0 0 1 4 21680701 21680722 mRNA hsa-miR-449a C12orf39 miRanda miRanda
5211 chr12 21680708 21680708 1 + G C UCEC 21680707 + 21680687 21680727 41 AGCCGGAGAAAGGACCTCTCCGACCGGCCACTGCCGGGTGA AGCCGGAGAAAGGACCTCTCCCACCGGCCACTGCCGGGTGA < 41bp 0.779140807703576 0.473143670308652 0.23608947 0.13043109 prediction 0.558281615407151 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680707 chr12:21680708 nonsynonymous SNV 0.110 3 22 hm5C_associated_SNPs_58078 0 0 1 4 21680701 21680722 mRNA hsa-miR-449b C12orf39 miRanda miRanda
5212 chr19 17002696 17002696 1 + A C rs552158038 17002692 + 17002672 17002712 41 GCCACGATGCCAAGCACAGCCAACAGCCACCAGCAGCCAGG GCCACGATGCCAAGCACAGCCAACCGCCACCAGCAGCCAGG < 41bp 0.82426002580385 0.5451223588821 0.43453833 0.2529785 prediction 0.5582753338435 Functional Loss - F2RL3 ENSG00000127533 UTR3 Human protein_coding chr19:17002692 chr19:17002696 . . 0 25 hm5C_associated_SNPs_58079 0 0 0 1 17002683 17002706 mRNA hsa-miR-138 F2RL3 miRanda miRanda
5213 chr4 48835468 48835468 1 + G T UCEC 48835466 + 48835446 48835486 41 GGAAGAAAGGAGAGTCTTCGCAGAATGCAATGATGAAAGCT GGAAGAAAGGAGAGTCTTCGCATAATGCAATGATGAAAGCT < 41bp 0.840020522422998 0.561134241380421 0.2727723 0.32984513 prediction 0.557772562085153 Functional Loss - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835466 chr4:48835468 stopgain 0.977 1 23 hm5C_associated_SNPs_58127 0 0 1 6 48835456 48835477 mRNA hsa-miR-25 OCIAD1 miRanda miRanda
5214 chr4 48835468 48835468 1 + G T UCEC 48835466 + 48835446 48835486 41 GGAAGAAAGGAGAGTCTTCGCAGAATGCAATGATGAAAGCT GGAAGAAAGGAGAGTCTTCGCATAATGCAATGATGAAAGCT < 41bp 0.840020522422998 0.561134241380421 0.2727723 0.32984513 prediction 0.557772562085153 Functional Loss - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835466 chr4:48835468 stopgain 0.977 1 23 hm5C_associated_SNPs_58127 0 0 1 6 48835456 48835477 mRNA hsa-miR-32 OCIAD1 miRanda miRanda
5215 chr4 48835468 48835468 1 + G T UCEC 48835466 + 48835446 48835486 41 GGAAGAAAGGAGAGTCTTCGCAGAATGCAATGATGAAAGCT GGAAGAAAGGAGAGTCTTCGCATAATGCAATGATGAAAGCT < 41bp 0.840020522422998 0.561134241380421 0.2727723 0.32984513 prediction 0.557772562085153 Functional Loss - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835466 chr4:48835468 stopgain 0.977 1 23 hm5C_associated_SNPs_58127 0 0 1 6 48835456 48835477 mRNA hsa-miR-92a OCIAD1 miRanda miRanda
5216 chr4 48835468 48835468 1 + G T UCEC 48835466 + 48835446 48835486 41 GGAAGAAAGGAGAGTCTTCGCAGAATGCAATGATGAAAGCT GGAAGAAAGGAGAGTCTTCGCATAATGCAATGATGAAAGCT < 41bp 0.840020522422998 0.561134241380421 0.2727723 0.32984513 prediction 0.557772562085153 Functional Loss - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835466 chr4:48835468 stopgain 0.977 1 23 hm5C_associated_SNPs_58127 0 0 1 6 48835456 48835477 mRNA hsa-miR-363 OCIAD1 miRanda miRanda
5217 chr4 48835468 48835468 1 + G T UCEC 48835466 + 48835446 48835486 41 GGAAGAAAGGAGAGTCTTCGCAGAATGCAATGATGAAAGCT GGAAGAAAGGAGAGTCTTCGCATAATGCAATGATGAAAGCT < 41bp 0.840020522422998 0.561134241380421 0.2727723 0.32984513 prediction 0.557772562085153 Functional Loss - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835466 chr4:48835468 stopgain 0.977 1 23 hm5C_associated_SNPs_58127 0 0 1 6 48835457 48835477 mRNA hsa-miR-367 OCIAD1 miRanda miRanda
5218 chr4 48835468 48835468 1 + G T UCEC 48835466 + 48835446 48835486 41 GGAAGAAAGGAGAGTCTTCGCAGAATGCAATGATGAAAGCT GGAAGAAAGGAGAGTCTTCGCATAATGCAATGATGAAAGCT < 41bp 0.840020522422998 0.561134241380421 0.2727723 0.32984513 prediction 0.557772562085153 Functional Loss - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835466 chr4:48835468 stopgain 0.977 1 23 hm5C_associated_SNPs_58127 0 0 1 6 48835456 48835477 mRNA hsa-miR-92b OCIAD1 miRanda miRanda
5219 chr10 115348742 115348742 1 + G T UCEC 115348740 + 115348720 115348760 41 AGGGTGGACATGGCTCACAACAGCAGGGCCTTCTTCTTTTT AGGGTGGACATGGCTCACAACATCAGGGCCTTCTTCTTTTT < 41bp 0.836899697678792 0.558036930750673 0.3122619 0.1558578 prediction 0.557725533856237 Functional Loss - NRAP ENSG00000197893 CDS Human protein_coding chr10:115348740 chr10:115348742 nonsynonymous SNV 0.673 0 23 hm5C_associated_SNPs_58133 0 0 0 1 115348726 115348747 mRNA hsa-miR-370 HABP2 miRanda miRanda
5220 chr10 94821918 94821918 1 + A C rs201284617 94821914 + 94821894 94821934 41 GCCTGGTGCGCAGCCAGTGGCCGCAGAGTGCGCACATCCTG GCCTGGTGCGCAGCCAGTGGCCGCCGAGTGCGCACATCCTG < 41bp 0.778164942949835 0.387499166976543 0.2458488 0.13615087 prediction 0.556329885899669 Functional Loss - CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94821914 chr10:94821918 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_58281 0 0 0 1 94821917 94821938 mRNA hsa-miR-214 CYP26C1 miRanda miRanda
5221 chr18 9886891 9886891 1 + G T COAD 9886889 + 9886869 9886909 41 GGAGGACCTCCCCAAGTCCTCAGAAAAAGCCATCCAGCCCA GGAGGACCTCCCCAAGTCCTCATAAAAAGCCATCCAGCCCA < 41bp 0.859178017890875 0.581121392411497 0.46333462 0.064323574 prediction 0.556113250958755 Functional Loss - TXNDC2 ENSG00000168454 CDS Human protein_coding chr18:9886889 chr18:9886891 stopgain 0.000 0 23 hm5C_associated_SNPs_58301 0 0 0 2 9886880 9886902 mRNA hsa-miR-135a TXNDC2 miRanda miRanda
5222 chr18 9886891 9886891 1 + G T COAD 9886889 + 9886869 9886909 41 GGAGGACCTCCCCAAGTCCTCAGAAAAAGCCATCCAGCCCA GGAGGACCTCCCCAAGTCCTCATAAAAAGCCATCCAGCCCA < 41bp 0.859178017890875 0.581121392411497 0.46333462 0.064323574 prediction 0.556113250958755 Functional Loss - TXNDC2 ENSG00000168454 CDS Human protein_coding chr18:9886889 chr18:9886891 stopgain 0.000 0 23 hm5C_associated_SNPs_58301 0 0 0 2 9886880 9886902 mRNA hsa-miR-135b TXNDC2 miRanda miRanda
5223 chr3 122811274 122811274 1 + G T COAD 122811272 + 122811252 122811292 41 GTGAAAGGACAAGGGACCATCTGCTGGGTGGACTGTGGGTA GTGAAAGGACAAGGGACCATCTTCTGGGTGGACTGTGGGTA < 41bp 0.777657833775619 0.445058699346268 0.14013192 0.10976541 prediction 0.555315667551237 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122811272 chr3:122811274 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_58371 0 0 1 1 122811274 122811289 mRNA hsa-miR-197 PDIA5 miRanda miRanda
5224 chr10 95556903 95556903 1 + G T UCEC 95556900 + 95556880 95556920 41 CCCAATGACATTGAAACATTCAAGATTGAAAACAACTGGTA CCCAATGACATTGAAACATTCAATATTGAAAACAACTGGTA < 41bp 0.777541485769525 0.422873460018091 0.3699863 0.19683135 prediction 0.55508297153905 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95556900 chr10:95556903 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_58382 0 0 0 3 95556898 95556919 mRNA hsa-miR-199b-5p LGI1 miRanda miRanda
5225 chr10 95556903 95556903 1 + G T UCEC 95556900 + 95556880 95556920 41 CCCAATGACATTGAAACATTCAAGATTGAAAACAACTGGTA CCCAATGACATTGAAACATTCAATATTGAAAACAACTGGTA < 41bp 0.777541485769525 0.422873460018091 0.3699863 0.19683135 prediction 0.55508297153905 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95556900 chr10:95556903 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_58382 0 0 0 3 95556897 95556920 mRNA hsa-miR-145 LGI1 miRanda miRanda
5226 chr10 95556903 95556903 1 + G T UCEC 95556900 + 95556880 95556920 41 CCCAATGACATTGAAACATTCAAGATTGAAAACAACTGGTA CCCAATGACATTGAAACATTCAATATTGAAAACAACTGGTA < 41bp 0.777541485769525 0.422873460018091 0.3699863 0.19683135 prediction 0.55508297153905 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95556900 chr10:95556903 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_58382 0 0 0 3 95556894 95556918 mRNA hsa-miR-382 LGI1 miRanda miRanda
5227 chr18 12277260 12277260 1 + G T LUSC 12277257 + 12277237 12277277 41 TCACAAGCCAAGGGCAGGTTCACGTGTGGATAGGGATGCAG TCACAAGCCAAGGGCAGGTTCACTTGTGGATAGGGATGCAG < 41bp 0.777301017935562 0.387924995077309 0.3071375 0.15386519 prediction 0.554602035871124 Functional Loss - CIDEA ENSG00000176194 CDS Human protein_coding chr18:12277257 chr18:12277260 synonymous SNV . 0 24 hm5C_associated_SNPs_58427 0 0 0 1 12277255 12277276 mRNA hsa-miR-324-5p CIDEA miRanda miRanda
5228 chr10 106976816 106976816 1 + G T LUAD 106976814 + 106976794 106976834 41 ATAAGAGTGCGGGGATCTTCCAGGTGACAGCCTATGCAGAG ATAAGAGTGCGGGGATCTTCCATGTGACAGCCTATGCAGAG < 41bp 0.777277539941281 0.460874160102507 0.86225224 0.15618125 prediction 0.554555079882563 Functional Loss - SORCS3 ENSG00000156395 CDS Human protein_coding chr10:106976814 chr10:106976816 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_58428 0 0 0 1 106976811 106976832 mRNA hsa-miR-153 SORCS3 miRanda miRanda
5229 chr11 3430116 3430116 1 + G T LUAD 3430114 + 3430094 3430134 41 ACAGCTTCTTCTCAGAGTCTCAGGGCAAATCCTTTCGAGCA ACAGCTTCTTCTCAGAGTCTCATGGCAAATCCTTTCGAGCA < 41bp 0.866345425679011 0.589366376442702 0.94923043 0.44162932 prediction 0.553958098472618 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3430114 chr11:3430116 . . 0 23 hm5C_associated_SNPs_58483 0 0 0 5 3430098 3430119 mRNA hsa-miR-125b LOC650368 miRanda miRanda
5230 chr11 3430116 3430116 1 + G T LUAD 3430114 + 3430094 3430134 41 ACAGCTTCTTCTCAGAGTCTCAGGGCAAATCCTTTCGAGCA ACAGCTTCTTCTCAGAGTCTCATGGCAAATCCTTTCGAGCA < 41bp 0.866345425679011 0.589366376442702 0.94923043 0.44162932 prediction 0.553958098472618 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3430114 chr11:3430116 . . 0 23 hm5C_associated_SNPs_58483 0 0 0 5 3430096 3430119 mRNA hsa-miR-125a-5p LOC650368 miRanda miRanda
5231 chr11 3430116 3430116 1 + G T LUAD 3430114 + 3430094 3430134 41 ACAGCTTCTTCTCAGAGTCTCAGGGCAAATCCTTTCGAGCA ACAGCTTCTTCTCAGAGTCTCATGGCAAATCCTTTCGAGCA < 41bp 0.866345425679011 0.589366376442702 0.94923043 0.44162932 prediction 0.553958098472618 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3430114 chr11:3430116 . . 0 23 hm5C_associated_SNPs_58483 0 0 0 5 3430097 3430117 mRNA hsa-miR-378 LOC650368 miRanda miRanda
5232 chr11 3430116 3430116 1 + G T LUAD 3430114 + 3430094 3430134 41 ACAGCTTCTTCTCAGAGTCTCAGGGCAAATCCTTTCGAGCA ACAGCTTCTTCTCAGAGTCTCATGGCAAATCCTTTCGAGCA < 41bp 0.866345425679011 0.589366376442702 0.94923043 0.44162932 prediction 0.553958098472618 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3430114 chr11:3430116 . . 0 23 hm5C_associated_SNPs_58483 0 0 0 5 3430096 3430117 mRNA hsa-miR-422a LOC650368 miRanda miRanda
5233 chr11 3430116 3430116 1 + G T LUAD 3430114 + 3430094 3430134 41 ACAGCTTCTTCTCAGAGTCTCAGGGCAAATCCTTTCGAGCA ACAGCTTCTTCTCAGAGTCTCATGGCAAATCCTTTCGAGCA < 41bp 0.866345425679011 0.589366376442702 0.94923043 0.44162932 prediction 0.553958098472618 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3430114 chr11:3430116 . . 0 23 hm5C_associated_SNPs_58483 0 0 0 5 3430099 3430121 mRNA hsa-miR-874 LOC650368 miRanda miRanda
5234 chr11 125525243 125525243 1 + G T LUAD 125525240 + 125525220 125525260 41 ACCATCGGCTCTGGGGAATCCTGGTGAATATAGTGCTGCTA ACCATCGGCTCTGGGGAATCCTGTTGAATATAGTGCTGCTA < 41bp 0.776886252221122 0.410644573558428 0.44042864 0.21291283 prediction 0.553772504442244 Functional Loss - CHEK1 ENSG00000149554 splicing Human protein_coding chr11:125525240 chr11:125525243 . . 0 24 hm5C_associated_SNPs_58503 0 0 1 10 125525238 125525260 mRNA hsa-miR-15a CHEK1 miRanda miRanda
5235 chr11 125525243 125525243 1 + G T LUAD 125525240 + 125525220 125525260 41 ACCATCGGCTCTGGGGAATCCTGGTGAATATAGTGCTGCTA ACCATCGGCTCTGGGGAATCCTGTTGAATATAGTGCTGCTA < 41bp 0.776886252221122 0.410644573558428 0.44042864 0.21291283 prediction 0.553772504442244 Functional Loss - CHEK1 ENSG00000149554 splicing Human protein_coding chr11:125525240 chr11:125525243 . . 0 24 hm5C_associated_SNPs_58503 0 0 1 10 125525238 125525260 mRNA hsa-miR-16 CHEK1 miRanda miRanda
5236 chr11 125525243 125525243 1 + G T LUAD 125525240 + 125525220 125525260 41 ACCATCGGCTCTGGGGAATCCTGGTGAATATAGTGCTGCTA ACCATCGGCTCTGGGGAATCCTGTTGAATATAGTGCTGCTA < 41bp 0.776886252221122 0.410644573558428 0.44042864 0.21291283 prediction 0.553772504442244 Functional Loss - CHEK1 ENSG00000149554 splicing Human protein_coding chr11:125525240 chr11:125525243 . . 0 24 hm5C_associated_SNPs_58503 0 0 1 10 125525237 125525259 mRNA hsa-miR-103 CHEK1 miRanda miRanda
5237 chr11 125525243 125525243 1 + G T LUAD 125525240 + 125525220 125525260 41 ACCATCGGCTCTGGGGAATCCTGGTGAATATAGTGCTGCTA ACCATCGGCTCTGGGGAATCCTGTTGAATATAGTGCTGCTA < 41bp 0.776886252221122 0.410644573558428 0.44042864 0.21291283 prediction 0.553772504442244 Functional Loss - CHEK1 ENSG00000149554 splicing Human protein_coding chr11:125525240 chr11:125525243 . . 0 24 hm5C_associated_SNPs_58503 0 0 1 10 125525237 125525259 mRNA hsa-miR-107 CHEK1 miRanda miRanda
5238 chr11 125525243 125525243 1 + G T LUAD 125525240 + 125525220 125525260 41 ACCATCGGCTCTGGGGAATCCTGGTGAATATAGTGCTGCTA ACCATCGGCTCTGGGGAATCCTGTTGAATATAGTGCTGCTA < 41bp 0.776886252221122 0.410644573558428 0.44042864 0.21291283 prediction 0.553772504442244 Functional Loss - CHEK1 ENSG00000149554 splicing Human protein_coding chr11:125525240 chr11:125525243 . . 0 24 hm5C_associated_SNPs_58503 0 0 1 10 125525225 125525247 mRNA hsa-miR-197 CHEK1 miRanda miRanda
5239 chr11 125525243 125525243 1 + G T LUAD 125525240 + 125525220 125525260 41 ACCATCGGCTCTGGGGAATCCTGGTGAATATAGTGCTGCTA ACCATCGGCTCTGGGGAATCCTGTTGAATATAGTGCTGCTA < 41bp 0.776886252221122 0.410644573558428 0.44042864 0.21291283 prediction 0.553772504442244 Functional Loss - CHEK1 ENSG00000149554 splicing Human protein_coding chr11:125525240 chr11:125525243 . . 0 24 hm5C_associated_SNPs_58503 0 0 1 10 125525242 125525260 mRNA hsa-miR-15b CHEK1 miRanda miRanda
5240 chr11 125525243 125525243 1 + G T LUAD 125525240 + 125525220 125525260 41 ACCATCGGCTCTGGGGAATCCTGGTGAATATAGTGCTGCTA ACCATCGGCTCTGGGGAATCCTGTTGAATATAGTGCTGCTA < 41bp 0.776886252221122 0.410644573558428 0.44042864 0.21291283 prediction 0.553772504442244 Functional Loss - CHEK1 ENSG00000149554 splicing Human protein_coding chr11:125525240 chr11:125525243 . . 0 24 hm5C_associated_SNPs_58503 0 0 1 10 125525243 125525260 mRNA hsa-miR-195 CHEK1 miRanda miRanda
5241 chr11 125525243 125525243 1 + G T LUAD 125525240 + 125525220 125525260 41 ACCATCGGCTCTGGGGAATCCTGGTGAATATAGTGCTGCTA ACCATCGGCTCTGGGGAATCCTGTTGAATATAGTGCTGCTA < 41bp 0.776886252221122 0.410644573558428 0.44042864 0.21291283 prediction 0.553772504442244 Functional Loss - CHEK1 ENSG00000149554 splicing Human protein_coding chr11:125525240 chr11:125525243 . . 0 24 hm5C_associated_SNPs_58503 0 0 1 10 125525241 125525260 mRNA hsa-miR-424 CHEK1 miRanda miRanda
5242 chr11 125525243 125525243 1 + G T LUAD 125525240 + 125525220 125525260 41 ACCATCGGCTCTGGGGAATCCTGGTGAATATAGTGCTGCTA ACCATCGGCTCTGGGGAATCCTGTTGAATATAGTGCTGCTA < 41bp 0.776886252221122 0.410644573558428 0.44042864 0.21291283 prediction 0.553772504442244 Functional Loss - CHEK1 ENSG00000149554 splicing Human protein_coding chr11:125525240 chr11:125525243 . . 0 24 hm5C_associated_SNPs_58503 0 0 1 10 125525240 125525260 mRNA hsa-miR-497 CHEK1 miRanda miRanda
5243 chr11 125525243 125525243 1 + G T LUAD 125525240 + 125525220 125525260 41 ACCATCGGCTCTGGGGAATCCTGGTGAATATAGTGCTGCTA ACCATCGGCTCTGGGGAATCCTGTTGAATATAGTGCTGCTA < 41bp 0.776886252221122 0.410644573558428 0.44042864 0.21291283 prediction 0.553772504442244 Functional Loss - CHEK1 ENSG00000149554 splicing Human protein_coding chr11:125525240 chr11:125525243 . . 0 24 hm5C_associated_SNPs_58503 0 0 1 10 125525238 125525260 mRNA hsa-miR-503 CHEK1 miRanda miRanda
5244 chr2 204255850 204255850 1 + G T ESCA 204255848 + 204255828 204255868 41 GCCCCCTAGTCCCCCTATGTCAGGGAAAGGGACACTTGGGT GCCCCCTAGTCCCCCTATGTCATGGAAAGGGACACTTGGGT < 41bp 0.776791798592553 0.44705219600171 0.9337112 0.3526222 prediction 0.553583597185105 Functional Loss - ABI2 ENSG00000138443 CDS Human protein_coding chr2:204255848 chr2:204255850 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_58522 0 0 1 2 204255840 204255860 mRNA hsa-miR-204 ABI2 miRanda miRanda
5245 chr2 204255850 204255850 1 + G T ESCA 204255848 + 204255828 204255868 41 GCCCCCTAGTCCCCCTATGTCAGGGAAAGGGACACTTGGGT GCCCCCTAGTCCCCCTATGTCATGGAAAGGGACACTTGGGT < 41bp 0.776791798592553 0.44705219600171 0.9337112 0.3526222 prediction 0.553583597185105 Functional Loss - ABI2 ENSG00000138443 CDS Human protein_coding chr2:204255848 chr2:204255850 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_58522 0 0 1 2 204255839 204255860 mRNA hsa-miR-211 ABI2 miRanda miRanda
5246 chr2 24991224 24991224 1 + G T UCEC 24991222 + 24991202 24991242 41 GACCACAGACCCCCCAGGCCCAGCAGAAGAGCCTCCTTCAG GACCACAGACCCCCCAGGCCCATCAGAAGAGCCTCCTTCAG < 41bp 0.828220718871252 0.551461384624239 0.8118325 0.1640918 prediction 0.553518668494027 Functional Loss - NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24991222 chr2:24991224 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_58535 0 0 1 1 24991206 24991228 mRNA hsa-miR-330-5p NCOA1 miRanda miRanda
5247 chr20 2622218 2622218 1 + A C rs75427817 2622214 + 2622194 2622234 41 TAGGGAAGCTGGAGCCATCTCTGCACTAACTGCCCTCCCAA TAGGGAAGCTGGAGCCATCTCTGCCCTAACTGCCCTCCCAA < 41bp 0.887340131744683 0.610732165537427 0.7186571 0.7481403 prediction 0.553215932414511 Functional Loss - TMC2 ENSG00000149488 UTR3 Human protein_coding chr20:2622214 chr20:2622218 . . 0 25 hm5C_associated_SNPs_58567 0 0 0 1 2622199 2622221 mRNA hsa-miR-454 TMC2 miRanda miRanda
5248 chr6 31556310 31556310 1 + G T COAD 31556308 + 31556288 31556328 41 GTCCCAGGCCCAGGGCTCCTCAGAGCAGGAACTCCACTATG GTCCCAGGCCCAGGGCTCCTCATAGCAGGAACTCCACTATG < 41bp 0.776584774126863 0.487276806351316 0.9045615 0.38831687 prediction 0.553169548253726 Functional Loss - LST1 ENSG00000204482 CDS Human protein_coding chr6:31556308 chr6:31556310 stopgain 0.911 1 23 hm5C_associated_SNPs_58571 0 0 0 1 31556310 31556331 mRNA hsa-miR-153 LST1 miRanda miRanda
5249 chr7 31747192 31747192 1 + G T rs137866571 31747190 + 31747170 31747210 41 AAAGCACTGGGGTTCGGTTTCTGCATCTTCTGGATCAATTC AAAGCACTGGGGTTCGGTTTCTTCATCTTCTGGATCAATTC < 41bp 0.815365279611564 0.538866035420154 0.24023598 0.1914975 prediction 0.55299848838282 Functional Loss - PPP1R17 ENSG00000106341 UTR3 Human protein_coding chr7:31747190 chr7:31747192 . . 0 23 hm5C_associated_SNPs_58583 0 0 0 1 31747184 31747206 mRNA hsa-miR-383 C7orf16 miRanda miRanda
5250 chr5 82554470 82554470 1 + G T LUAD 82554468 + 82554448 82554488 41 CAGAACCTAAAATGGCTCCTCAGGAGAATCAGCTTCAAGAA CAGAACCTAAAATGGCTCCTCATGAGAATCAGCTTCAAGAA < 41bp 0.841170895498036 0.565150324072357 0.8966359 0.1242761 prediction 0.552041142851358 Functional Loss - XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82554468 chr5:82554470 nonsynonymous SNV 0.975 1 23 hm5C_associated_SNPs_58668 0 0 0 4 82554460 82554484 mRNA hsa-miR-320a XRCC4 miRanda miRanda
5251 chr5 82554470 82554470 1 + G T LUAD 82554468 + 82554448 82554488 41 CAGAACCTAAAATGGCTCCTCAGGAGAATCAGCTTCAAGAA CAGAACCTAAAATGGCTCCTCATGAGAATCAGCTTCAAGAA < 41bp 0.841170895498036 0.565150324072357 0.8966359 0.1242761 prediction 0.552041142851358 Functional Loss - XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82554468 chr5:82554470 nonsynonymous SNV 0.975 1 23 hm5C_associated_SNPs_58668 0 0 0 4 82554460 82554484 mRNA hsa-miR-320b XRCC4 miRanda miRanda
5252 chr5 82554470 82554470 1 + G T LUAD 82554468 + 82554448 82554488 41 CAGAACCTAAAATGGCTCCTCAGGAGAATCAGCTTCAAGAA CAGAACCTAAAATGGCTCCTCATGAGAATCAGCTTCAAGAA < 41bp 0.841170895498036 0.565150324072357 0.8966359 0.1242761 prediction 0.552041142851358 Functional Loss - XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82554468 chr5:82554470 nonsynonymous SNV 0.975 1 23 hm5C_associated_SNPs_58668 0 0 0 4 82554463 82554484 mRNA hsa-miR-320c XRCC4 miRanda miRanda
5253 chr5 82554470 82554470 1 + G T LUAD 82554468 + 82554448 82554488 41 CAGAACCTAAAATGGCTCCTCAGGAGAATCAGCTTCAAGAA CAGAACCTAAAATGGCTCCTCATGAGAATCAGCTTCAAGAA < 41bp 0.841170895498036 0.565150324072357 0.8966359 0.1242761 prediction 0.552041142851358 Functional Loss - XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82554468 chr5:82554470 nonsynonymous SNV 0.975 1 23 hm5C_associated_SNPs_58668 0 0 0 4 82554466 82554484 mRNA hsa-miR-320d XRCC4 miRanda miRanda
5254 chr20 23421019 23421019 1 + A C COAD 23421015 + 23420995 23421035 41 TTCCAGCAGAAGCTCATGAGCAAGAAGAACATGAATTCAAC TTCCAGCAGAAGCTCATGAGCAAGCAGAACATGAATTCAAC < 41bp 0.775994837754357 0.394307764197614 0.47234514 0.6094923 prediction 0.551989675508713 Functional Loss - CSTL1 ENSG00000125823 CDS Human protein_coding chr20:23421015 chr20:23421019 nonsynonymous SNV 0.052 0 25 hm5C_associated_SNPs_58671 0 0 0 1 23421016 23421037 mRNA hsa-miR-653 CSTL1 miRanda miRanda
5255 chr22 50637625 50637625 1 + A C rs55810238 50637621 + 50637601 50637641 41 ATTCGTGTTCTTGGGTCTGTCCCGAGTGGGCTCGCGTGCAG ATTCGTGTTCTTGGGTCTGTCCCGCGTGGGCTCGCGTGCAG < 41bp 0.87597132890371 0.600122146486227 0.26267582 0.14248395 prediction 0.551698364834966 Functional Loss - TRABD ENSG00000273253 ncRNA_exonic Human antisense chr22:50637621 chr22:50637625 . . 0 25 hm5C_associated_SNPs_58707 0 0 1 1 50637614 50637635 mRNA hsa-miR-551a TRABD miRanda miRanda
5256 chr5 104435390 104435390 1 + G T LUAD 104435388 + 104435368 104435408 41 GTCAGGAGTGATTCTGAAGCCTGAGGATGCCATTTTACAGA GTCAGGAGTGATTCTGAAGCCTTAGGATGCCATTTTACAGA < 41bp 0.775701888707535 0.485926292934415 0.12760219 0.041186154 prediction 0.551403777415069 Functional Loss - RAB9BP1 ENSG00000232159 ncRNA_exonic Human processed_pseudogene chr5:104435388 chr5:104435390 . . 0 23 hm5C_associated_SNPs_58733 0 0 0 2 104435389 104435412 mRNA hsa-miR-10a RAB9BP1 miRanda miRanda
5257 chr5 104435390 104435390 1 + G T LUAD 104435388 + 104435368 104435408 41 GTCAGGAGTGATTCTGAAGCCTGAGGATGCCATTTTACAGA GTCAGGAGTGATTCTGAAGCCTTAGGATGCCATTTTACAGA < 41bp 0.775701888707535 0.485926292934415 0.12760219 0.041186154 prediction 0.551403777415069 Functional Loss - RAB9BP1 ENSG00000232159 ncRNA_exonic Human processed_pseudogene chr5:104435388 chr5:104435390 . . 0 23 hm5C_associated_SNPs_58733 0 0 0 2 104435389 104435412 mRNA hsa-miR-10b RAB9BP1 miRanda miRanda
5258 chr3 38347694 38347694 1 + G C rs9847670 38347690 + 38347670 38347710 41 GTTTGCCAACCTCCTGGATGCGGTGGGGGAGTTTGGCACAT GTTTGCCAACCTCCTGGATGCGGTCGGGGAGTTTGGCACAT < 41bp 0.775574848961019 0.479222298842387 0.7433068 0.11557293 prediction 0.551149697922039 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38347690 chr3:38347694 synonymous SNV . 0 25 hm5C_associated_SNPs_58761 0 0 0 3 38347693 38347714 mRNA hsa-miR-1 SLC22A14 miRanda miRanda
5259 chr3 38347694 38347694 1 + G C rs9847670 38347690 + 38347670 38347710 41 GTTTGCCAACCTCCTGGATGCGGTGGGGGAGTTTGGCACAT GTTTGCCAACCTCCTGGATGCGGTCGGGGAGTTTGGCACAT < 41bp 0.775574848961019 0.479222298842387 0.7433068 0.11557293 prediction 0.551149697922039 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38347690 chr3:38347694 synonymous SNV . 0 25 hm5C_associated_SNPs_58761 0 0 0 3 38347693 38347714 mRNA hsa-miR-206 SLC22A14 miRanda miRanda
5260 chr3 38347694 38347694 1 + G C rs9847670 38347690 + 38347670 38347710 41 GTTTGCCAACCTCCTGGATGCGGTGGGGGAGTTTGGCACAT GTTTGCCAACCTCCTGGATGCGGTCGGGGAGTTTGGCACAT < 41bp 0.775574848961019 0.479222298842387 0.7433068 0.11557293 prediction 0.551149697922039 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38347690 chr3:38347694 synonymous SNV . 0 25 hm5C_associated_SNPs_58761 0 0 0 3 38347693 38347711 mRNA hsa-miR-455-5p SLC22A14 miRanda miRanda
5261 chr8 68070788 68070788 1 + A C LUAD 68070784 + 68070764 68070804 41 AACAGAGGGCACGAATTCAGCAGGAGTATGAAGAGGAACAG AACAGAGGGCACGAATTCAGCAGGCGTATGAAGAGGAACAG < 41bp 0.901590499422358 0.626037848937086 0.52841777 0.79141825 prediction 0.551105300970544 Functional Loss - CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68070784 chr8:68070788 nonsynonymous SNV 0.982 0 25 hm5C_associated_SNPs_58764 0 0 1 1 68070767 68070788 mRNA hsa-miR-370 CSPP1 miRanda miRanda
5262 chr19 11032328 11032328 1 + G T HNSC 11032325 + 11032305 11032345 41 CAGGGCAGTGGTGGTGGCAGCACGAGTGCCCACTATGCAGT CAGGGCAGTGGTGGTGGCAGCACTAGTGCCCACTATGCAGT < 41bp 0.89520773726514 0.619676591412357 0.82551825 0.3964911 prediction 0.551062291705565 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11032325 chr19:11032328 synonymous SNV . 0 24 hm5C_associated_SNPs_58767 0 0 1 1 11032322 11032346 mRNA hsa-miR-217 CARM1 miRanda miRanda
5263 chr12 111082930 111082930 1 + G T UCEC 111082928 + 111082908 111082948 41 TTCATCACCCAGTCATTCAACAGGAAGGTAAAGGGGAGAAG TTCATCACCCAGTCATTCAACATGAAGGTAAAGGGGAGAAG < 41bp 0.850608672123774 0.57514547653958 0.25846666 0.07251018 prediction 0.550926391168388 Functional Loss - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111082928 chr12:111082930 nonsynonymous SNV 0.242 0 23 hm5C_associated_SNPs_58778 0 0 0 1 111082910 111082930 mRNA hsa-miR-653 TCTN1 miRanda miRanda
5264 chr8 68049816 68049816 1 + G T LUSC 68049813 + 68049793 68049833 41 GGTGGAGGTGGTGCTCCTCTCAGGGATGCAAAAGGAAATCT GGTGGAGGTGGTGCTCCTCTCAGTGATGCAAAAGGAAATCT < 41bp 0.893869654839372 0.618641926850934 0.91493213 0.6384464 prediction 0.550455455976876 Functional Loss - CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68049813 chr8:68049816 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_58824 0 0 1 3 68049797 68049818 mRNA hsa-miR-125b CSPP1 miRanda miRanda
5265 chr8 68049816 68049816 1 + G T LUSC 68049813 + 68049793 68049833 41 GGTGGAGGTGGTGCTCCTCTCAGGGATGCAAAAGGAAATCT GGTGGAGGTGGTGCTCCTCTCAGTGATGCAAAAGGAAATCT < 41bp 0.893869654839372 0.618641926850934 0.91493213 0.6384464 prediction 0.550455455976876 Functional Loss - CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68049813 chr8:68049816 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_58824 0 0 1 3 68049788 68049818 mRNA hsa-miR-125a-5p CSPP1 miRanda miRanda
5266 chr8 68049816 68049816 1 + G T LUSC 68049813 + 68049793 68049833 41 GGTGGAGGTGGTGCTCCTCTCAGGGATGCAAAAGGAAATCT GGTGGAGGTGGTGCTCCTCTCAGTGATGCAAAAGGAAATCT < 41bp 0.893869654839372 0.618641926850934 0.91493213 0.6384464 prediction 0.550455455976876 Functional Loss - CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68049813 chr8:68049816 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_58824 0 0 1 3 68049800 68049822 mRNA hsa-miR-324-5p CSPP1 miRanda miRanda
5267 chr1 203830805 203830805 1 + G T LUAD 203830802 + 203830782 203830822 41 TCCACCATGGCGTACCGTGGCCAGGGTCAGAAAGTGCAGAA TCCACCATGGCGTACCGTGGCCATGGTCAGAAAGTGCAGAA < 41bp 0.774964533903078 0.464175265097015 0.88557804 0.3329206 prediction 0.549929067806156 Functional Loss - SNRPE ENSG00000182004 CDS Human protein_coding chr1:203830802 chr1:203830805 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_58881 0 0 1 2 203830787 203830810 mRNA hsa-miR-504 SNRPE miRanda miRanda
5268 chr1 203830805 203830805 1 + G T LUAD 203830802 + 203830782 203830822 41 TCCACCATGGCGTACCGTGGCCAGGGTCAGAAAGTGCAGAA TCCACCATGGCGTACCGTGGCCATGGTCAGAAAGTGCAGAA < 41bp 0.774964533903078 0.464175265097015 0.88557804 0.3329206 prediction 0.549929067806156 Functional Loss - SNRPE ENSG00000182004 CDS Human protein_coding chr1:203830802 chr1:203830805 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_58881 0 0 1 2 203830802 203830823 mRNA hsa-miR-544 SNRPE miRanda miRanda
5269 chr2 28841253 28841253 1 + G C UCEC 28841249 + 28841229 28841269 41 ACATCAAAGTGGTGGCCGCCCTGGGTGACTCTCTGACTGTG ACATCAAAGTGGTGGCCGCCCTGGCTGACTCTCTGACTGTG < 41bp 0.774958971834227 0.489565670675879 0.82994896 0.43381095 prediction 0.549917943668453 Functional Loss - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28841249 chr2:28841253 nonsynonymous SNV 0.351 5 25 hm5C_associated_SNPs_58884 0 0 0 1 28841243 28841266 mRNA hsa-miR-361-5p PLB1 miRanda miRanda
5270 chr7 56067016 56067016 1 + G C rs4689 56067012 + 56066992 56067032 41 TTGTCCAGTATACCTTATAACACTGAGCCACTTCTCCCCAC TTGTCCAGTATACCTTATAACACTCAGCCACTTCTCCCCAC < 41bp 0.785864043410759 0.510949882305308 0.15455875 0.032521248 prediction 0.549828322210902 Functional Loss - NIPSNAP2 ENSG00000146729 UTR3 Human protein_coding chr7:56067012 chr7:56067016 . . 0 25 hm5C_associated_SNPs_58894 0 0 1 3 56066999 56067021 mRNA hsa-miR-24 GBAS miRanda miRanda
5271 chr7 56067016 56067016 1 + G C rs4689 56067012 + 56066992 56067032 41 TTGTCCAGTATACCTTATAACACTGAGCCACTTCTCCCCAC TTGTCCAGTATACCTTATAACACTCAGCCACTTCTCCCCAC < 41bp 0.785864043410759 0.510949882305308 0.15455875 0.032521248 prediction 0.549828322210902 Functional Loss - NIPSNAP2 ENSG00000146729 UTR3 Human protein_coding chr7:56067012 chr7:56067016 . . 0 25 hm5C_associated_SNPs_58894 0 0 1 3 56067001 56067025 mRNA hsa-miR-373 GBAS miRanda miRanda
5272 chr7 56067016 56067016 1 + G C rs4689 56067012 + 56066992 56067032 41 TTGTCCAGTATACCTTATAACACTGAGCCACTTCTCCCCAC TTGTCCAGTATACCTTATAACACTCAGCCACTTCTCCCCAC < 41bp 0.785864043410759 0.510949882305308 0.15455875 0.032521248 prediction 0.549828322210902 Functional Loss - NIPSNAP2 ENSG00000146729 UTR3 Human protein_coding chr7:56067012 chr7:56067016 . . 0 25 hm5C_associated_SNPs_58894 0 0 1 3 56067003 56067025 mRNA hsa-miR-520c-3p GBAS miRanda miRanda
5273 chr1 215298027 215298027 1 + A C UCEC 215298023 + 215298003 215298043 41 ATTATACCGTTAGGAAACACCTCCAATCAAATCAGTCACTG ATTATACCGTTAGGAAACACCTCCCATCAAATCAGTCACTG < 41bp 0.774877686466948 0.352694409659274 0.9467883 0.08948514 prediction 0.549755372933897 Functional Loss - KCNK2 ENSG00000082482 CDS Human protein_coding chr1:215298023 chr1:215298027 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_58906 0 0 0 2 215298003 215298027 mRNA hsa-miR-122 KCNK2 miRanda miRanda
5274 chr1 215298027 215298027 1 + A C UCEC 215298023 + 215298003 215298043 41 ATTATACCGTTAGGAAACACCTCCAATCAAATCAGTCACTG ATTATACCGTTAGGAAACACCTCCCATCAAATCAGTCACTG < 41bp 0.774877686466948 0.352694409659274 0.9467883 0.08948514 prediction 0.549755372933897 Functional Loss - KCNK2 ENSG00000082482 CDS Human protein_coding chr1:215298023 chr1:215298027 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_58906 0 0 0 2 215298020 215298042 mRNA hsa-miR-134 KCNK2 miRanda miRanda
5275 chr10 131964859 131964859 1 + G T LUAD 131964857 + 131964837 131964877 41 TCTCAGATGAAGAGGTTCGACAGGGACTCAAAGCCTATTCC TCTCAGATGAAGAGGTTCGACATGGACTCAAAGCCTATTCC < 41bp 0.861013364037791 0.586153954647738 0.8975557 0.34593964 prediction 0.549718818780107 Functional Loss - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131964857 chr10:131964859 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_58910 0 0 1 5 131964845 131964868 mRNA hsa-miR-133a GLRX3 miRanda miRanda
5276 chr10 131964859 131964859 1 + G T LUAD 131964857 + 131964837 131964877 41 TCTCAGATGAAGAGGTTCGACAGGGACTCAAAGCCTATTCC TCTCAGATGAAGAGGTTCGACATGGACTCAAAGCCTATTCC < 41bp 0.861013364037791 0.586153954647738 0.8975557 0.34593964 prediction 0.549718818780107 Functional Loss - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131964857 chr10:131964859 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_58910 0 0 1 5 131964852 131964875 mRNA hsa-miR-135a GLRX3 miRanda miRanda
5277 chr10 131964859 131964859 1 + G T LUAD 131964857 + 131964837 131964877 41 TCTCAGATGAAGAGGTTCGACAGGGACTCAAAGCCTATTCC TCTCAGATGAAGAGGTTCGACATGGACTCAAAGCCTATTCC < 41bp 0.861013364037791 0.586153954647738 0.8975557 0.34593964 prediction 0.549718818780107 Functional Loss - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131964857 chr10:131964859 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_58910 0 0 1 5 131964852 131964875 mRNA hsa-miR-135b GLRX3 miRanda miRanda
5278 chr10 131964859 131964859 1 + G T LUAD 131964857 + 131964837 131964877 41 TCTCAGATGAAGAGGTTCGACAGGGACTCAAAGCCTATTCC TCTCAGATGAAGAGGTTCGACATGGACTCAAAGCCTATTCC < 41bp 0.861013364037791 0.586153954647738 0.8975557 0.34593964 prediction 0.549718818780107 Functional Loss - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131964857 chr10:131964859 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_58910 0 0 1 5 131964840 131964862 mRNA hsa-miR-339-5p GLRX3 miRanda miRanda
5279 chr10 131964859 131964859 1 + G T LUAD 131964857 + 131964837 131964877 41 TCTCAGATGAAGAGGTTCGACAGGGACTCAAAGCCTATTCC TCTCAGATGAAGAGGTTCGACATGGACTCAAAGCCTATTCC < 41bp 0.861013364037791 0.586153954647738 0.8975557 0.34593964 prediction 0.549718818780107 Functional Loss - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131964857 chr10:131964859 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_58910 0 0 1 5 131964845 131964868 mRNA hsa-miR-133b GLRX3 miRanda miRanda
5280 chr2 207457381 207457381 1 + C T BLCA 207457379 + 207457359 207457399 41 CTTACTCTGTACCAATCTTACTCGAGCTCCACGTATTGGTC CTTACTCTGTACCAATCTTACTTGAGCTCCACGTATTGGTC < 41bp 0.774718594967483 0.487135971247239 0.3322956 0.2227082 prediction 0.549437189934967 Functional Loss - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207457379 chr2:207457381 stopgain 0.996 0 23 hm5C_associated_SNPs_58944 0 0 0 1 207457370 207457396 mRNA hsa-miR-200c ADAM23 miRanda miRanda
5281 chr7 105645021 105645021 1 + G T BLCA 105645018 + 105644998 105645038 41 GACAAAATCCCACCATTTCCCTGGAAGTTCTAGTGAAGGAC GACAAAATCCCACCATTTCCCTGTAAGTTCTAGTGAAGGAC < 41bp 0.774450522775072 0.398078424184009 0.10077444 0.08031678 prediction 0.548901045550144 Functional Loss - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105645018 chr7:105645021 stopgain 0.953 0 24 hm5C_associated_SNPs_59001 0 0 0 1 105645015 105645035 mRNA hsa-miR-384 CDHR3 miRanda miRanda
5282 chr4 39482830 39482830 1 + A C STAD 39482826 + 39482806 39482846 41 ACTACAGCAAGGGGAAGTGCCTGAAGACATACACTGGCCAC ACTACAGCAAGGGGAAGTGCCTGACGACATACACTGGCCAC < 41bp 0.894123333482778 0.619749049942287 0.21928006 0.10655451 prediction 0.548748567080982 Functional Loss - LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482826 chr4:39482830 . . 0 25 hm5C_associated_SNPs_59015 0 0 1 2 39482813 39482843 mRNA hsa-miR-199a-5p LOC401127 miRanda miRanda
5283 chr4 39482830 39482830 1 + A C STAD 39482826 + 39482806 39482846 41 ACTACAGCAAGGGGAAGTGCCTGAAGACATACACTGGCCAC ACTACAGCAAGGGGAAGTGCCTGACGACATACACTGGCCAC < 41bp 0.894123333482778 0.619749049942287 0.21928006 0.10655451 prediction 0.548748567080982 Functional Loss - LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482826 chr4:39482830 . . 0 25 hm5C_associated_SNPs_59015 0 0 1 2 39482823 39482843 mRNA hsa-miR-199b-5p LOC401127 miRanda miRanda
5284 chr1 60294516 60294516 1 + A C CESC 60294512 + 60294492 60294532 41 AAAGAGGATGTTGGGGACAACTGGAGAATAAAGGTATGCAG AAAGAGGATGTTGGGGACAACTGGCGAATAAAGGTATGCAG < 41bp 0.90643484462129 0.632195981735809 0.8387997 0.7721791 prediction 0.548477725770961 Functional Loss - HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60294512 chr1:60294516 synonymous SNV . 0 25 hm5C_associated_SNPs_59035 0 0 1 3 60294492 60294516 mRNA hsa-miR-199a-5p HOOK1 miRanda miRanda
5285 chr1 60294516 60294516 1 + A C CESC 60294512 + 60294492 60294532 41 AAAGAGGATGTTGGGGACAACTGGAGAATAAAGGTATGCAG AAAGAGGATGTTGGGGACAACTGGCGAATAAAGGTATGCAG < 41bp 0.90643484462129 0.632195981735809 0.8387997 0.7721791 prediction 0.548477725770961 Functional Loss - HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60294512 chr1:60294516 synonymous SNV . 0 25 hm5C_associated_SNPs_59035 0 0 1 3 60294510 60294524 mRNA hsa-miR-193a-3p HOOK1 miRanda miRanda
5286 chr1 60294516 60294516 1 + A C CESC 60294512 + 60294492 60294532 41 AAAGAGGATGTTGGGGACAACTGGAGAATAAAGGTATGCAG AAAGAGGATGTTGGGGACAACTGGCGAATAAAGGTATGCAG < 41bp 0.90643484462129 0.632195981735809 0.8387997 0.7721791 prediction 0.548477725770961 Functional Loss - HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60294512 chr1:60294516 synonymous SNV . 0 25 hm5C_associated_SNPs_59035 0 0 1 3 60294510 60294524 mRNA hsa-miR-193b HOOK1 miRanda miRanda
5287 chr15 74326943 74326943 1 + G T SARC 74326941 + 74326921 74326961 41 GGTCCCAGGGGGCACAGCCACAGCAGGTGACTCTCAGACTT GGTCCCAGGGGGCACAGCCACATCAGGTGACTCTCAGACTT < 41bp 0.795068629148914 0.520949941497844 0.87272084 0.36132488 prediction 0.54823737530214 Functional Loss - PML ENSG00000140464 CDS Human protein_coding chr15:74326941 chr15:74326943 nonsynonymous SNV 0.630 0 23 hm5C_associated_SNPs_59055 0 0 1 1 74326927 74326948 mRNA hsa-miR-370 PML miRanda miRanda
5288 chr21 43838718 43838718 1 + G T THCA 43838716 + 43838696 43838736 41 TCTGACACGTGGGTGAAGCACAGGTGAGTGCTGCCTCTGGC TCTGACACGTGGGTGAAGCACATGTGAGTGCTGCCTCTGGC < 41bp 0.872700849172977 0.598760550383545 0.7574935 0.3638195 prediction 0.547880597578864 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43838716 chr21:43838718 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_59099 0 0 0 1 43838698 43838718 mRNA hsa-miR-218 UBASH3A miRanda miRanda
5289 chr4 158257749 158257749 1 + G T READ 158257747 + 158257727 158257767 41 AGTGTAGTTTTATTCCTGGTCAGCAGATTTAGCCCCTACGA AGTGTAGTTTTATTCCTGGTCATCAGATTTAGCCCCTACGA < 41bp 0.773845482669642 0.461920671300182 0.49801743 0.16819507 prediction 0.547690965339284 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158257747 chr4:158257749 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_59121 0 0 0 1 158257732 158257756 mRNA hsa-miR-216b GRIA2 miRanda miRanda
5290 chr1 20945046 20945046 1 + G T LUSC 20945044 + 20945024 20945064 41 CCTCCTTTGGGCCTGAGGACCTGCAGAAGACCCAGTGACAG CCTCCTTTGGGCCTGAGGACCTTCAGAAGACCCAGTGACAG < 41bp 0.842000247871123 0.568252146960507 0.33068472 0.44286367 prediction 0.547496201821233 Functional Loss - CDA ENSG00000158825 CDS Human protein_coding chr1:20945044 chr1:20945046 synonymous SNV . 0 23 hm5C_associated_SNPs_59140 0 0 0 1 20945029 20945052 mRNA hsa-miR-544 CDA miRanda miRanda
5291 chr1 113393010 113393010 1 - T G rs6701751 113393014 - 113392994 113393034 41 GACTCGTCTTTAATACCCACCAGGAGCCAGTCGCCGCGGGC GACTCGTCTTTAATACCCACCAGGCGCCAGTCGCCGCGGGC < 41bp 0.773729120773941 0.423580442379965 0.8735607 0.7233327 prediction 0.547458241547882 Functional Loss - LINC01356 ENSG00000215866;ENSG00000224167 ncRNA_exonic Human other chr1:113393014 chr1:113393010 . . 0 25 hm5C_associated_SNPs_59145 0 0 0 1 113393004 113393026 lncRNA hsa-miR-149-5p LINC01356 miRanda starBase2
5292 chr2 189859016 189859016 1 + A C THCA 189859012 + 189858992 189859032 41 GATGGGAGCCCGGGGTCCTCCAGGACCAGCCGGTGCTAATG GATGGGAGCCCGGGGTCCTCCAGGCCCAGCCGGTGCTAATG < 41bp 0.909498592681504 0.635824062279203 0.90720403 0.9101509 prediction 0.547349060804603 Functional Loss - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189859012 chr2:189859016 synonymous SNV . 0 25 hm5C_associated_SNPs_59158 0 0 0 1 189859016 189859038 mRNA hsa-miR-29b COL3A1 miRanda miRanda
5293 chr1 40432312 40432312 1 + A C COAD 40432308 + 40432288 40432328 41 CTGGCAGCGGGGGTCATTGTCTGTATCTATATAATCTGTGC CTGGCAGCGGGGGTCATTGTCTGTCTCTATATAATCTGTGC < 41bp 0.773278565619098 0.357351549782399 0.18762955 0.021392584 prediction 0.546557131238196 Functional Loss - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40432308 chr1:40432312 nonsynonymous SNV 0.673 1 25 hm5C_associated_SNPs_59249 0 0 0 1 40432293 40432315 mRNA hsa-miR-383 MFSD2A miRanda miRanda
5294 chr11 43918868 43918868 1 + G T UCEC 43918865 + 43918845 43918885 41 CCCAGGCCCAGCCATTCTGACAAGAACTAGACTTTGGGCTC CCCAGGCCCAGCCATTCTGACAATAACTAGACTTTGGGCTC < 41bp 0.773237527892741 0.392215597730421 0.71461326 0.20248446 prediction 0.546475055785482 Functional Loss - SEC14L1P1 ENSG00000166199 CDS Human protein_coding chr11:43918865 chr11:43918868 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_59256 0 0 1 1 43918852 43918877 mRNA hsa-miR-223 ALKBH3 miRanda miRanda
5295 chr21 38884448 38884448 1 + C T CESC 38884446 + 38884426 38884466 41 CAGGCCAAGGGTCTACAATTCTCCAACGAATAGCTCCTCTA CAGGCCAAGGGTCTACAATTCTTCAACGAATAGCTCCTCTA < 41bp 0.773119700380811 0.491444188432228 0.9499819 0.09111062 prediction 0.546239400761622 Functional Loss - DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38884446 chr21:38884448 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_59281 0 0 1 2 38884443 38884464 mRNA hsa-miR-28-5p DYRK1A miRanda miRanda
5296 chr21 38884448 38884448 1 + C T CESC 38884446 + 38884426 38884466 41 CAGGCCAAGGGTCTACAATTCTCCAACGAATAGCTCCTCTA CAGGCCAAGGGTCTACAATTCTTCAACGAATAGCTCCTCTA < 41bp 0.773119700380811 0.491444188432228 0.9499819 0.09111062 prediction 0.546239400761622 Functional Loss - DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38884446 chr21:38884448 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_59281 0 0 1 2 38884441 38884464 mRNA hsa-miR-708 DYRK1A miRanda miRanda
5297 chr20 44049292 44049292 1 + A T UCEC 44049288 + 44049268 44049308 41 CCGCCATGATCAACAACTCTCGAAACCTCAACATCCAGCTC CCGCCATGATCAACAACTCTCGAATCCTCAACATCCAGCTC < 41bp 0.783637231919506 0.510575823325107 0.5423252 0.40455168 prediction 0.546122817188798 Functional Loss - PIGT ENSG00000124155 CDS Human protein_coding chr20:44049288 chr20:44049292 nonsynonymous SNV 0.971 1 25 hm5C_associated_SNPs_59288 0 0 1 1 44049284 44049307 mRNA hsa-miR-138 PIGT miRanda miRanda
5298 chr1 76256985 76256985 1 + G T UCEC 76256982 + 76256962 76257002 41 TATTGTAGGAGAAATTGACACAAGATTCTCTTTTTGTGCGG TATTGTAGGAGAAATTGACACAATATTCTCTTTTTGTGCGG < 41bp 0.883742991256277 0.610872892667624 0.33391717 0.15119082 prediction 0.545740197177305 Functional Loss - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76256982 chr1:76256985 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_59324 0 0 1 1 76256970 76256985 mRNA hsa-miR-599 RABGGTB miRanda miRanda
5299 chr17 33289937 33289937 1 + A T rs8249 33289933 + 33289913 33289953 41 AGTGTTATATACCAAAATGCCAACATTTCCACGACAGACTT AGTGTTATATACCAAAATGCCAACTTTTCCACGACAGACTT < 41bp 0.772765232032239 0.484936955731224 0.02373302 0.020867944 prediction 0.545530464064477 Functional Loss - ZNF830 ENSG00000198783 UTR3 Human protein_coding chr17:33289933 chr17:33289937 . . 0 25 hm5C_associated_SNPs_59341 0 0 1 1 33289934 33289954 mRNA hsa-miR-382 ZNF830 miRanda miRanda
5300 chr7 128317797 128317797 1 + C T rs201533178 128317795 + 128317775 128317815 41 CAGAAAGGCCTGTCCATCACCACCAAAGACCCGAGAATCAA CAGAAAGGCCTGTCCATCACCATCAAAGACCCGAGAATCAA < 41bp 0.788605737291341 0.515856295765704 0.10441393 0.07992986 prediction 0.545498883051275 Functional Loss - FAM71F2 ENSG00000205085 CDS Human protein_coding chr7:128317795 chr7:128317797 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_59345 0 0 0 1 128317781 128317803 mRNA hsa-miR-9 FAM71F2 miRanda miRanda
5301 chr14 90455387 90455387 1 + G T COAD 90455384 + 90455364 90455404 41 TTAAAGAGAGCATGCTGACACTGGGGAAGGAAAGCAAGACT TTAAAGAGAGCATGCTGACACTGTGGAAGGAAAGCAAGACT < 41bp 0.772718320431093 0.394887465172974 0.29814866 0.061280698 prediction 0.545436640862187 Functional Loss - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90455384 chr14:90455387 nonsynonymous SNV 0.568 1 24 hm5C_associated_SNPs_59354 0 0 1 1 90455384 90455404 mRNA hsa-miR-431 TDP1 miRanda miRanda
5302 chr12 21661416 21661416 1 + G T UCEC 21661413 + 21661393 21661433 41 TGAAAGCTACAGGTTTTTTTCTGGGTGGTGTATTTGTAGTC TGAAAGCTACAGGTTTTTTTCTGTGTGGTGTATTTGTAGTC < 41bp 0.879591592817443 0.60718517229984 0.8746495 0.10219303 prediction 0.544812841035207 Functional Loss - GOLT1B ENSG00000111711 CDS Human protein_coding chr12:21661413 chr12:21661416 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_59420 0 0 1 1 21661402 21661424 mRNA hsa-miR-362-3p GOLT1B miRanda miRanda
5303 chrX 129190757 129190757 1 + G C rs187046748 129190753 + 129190733 129190773 41 GGTGGAATGGGGTGGGGGAACATGGACTTGTGACTAACGAA GGTGGAATGGGGTGGGGGAACATGCACTTGTGACTAACGAA < 41bp 0.772357392882899 0.476812662927374 0.8863979 0.8657819 prediction 0.544714785765799 Functional Loss - BCORL1 ENSG00000085185 UTR3 Human protein_coding chrX:129190753 chrX:129190757 . . 0 25 hm5C_associated_SNPs_59426 0 0 1 3 129190747 129190766 mRNA hsa-miR-27a BCORL1 miRanda miRanda
5304 chrX 129190757 129190757 1 + G C rs187046748 129190753 + 129190733 129190773 41 GGTGGAATGGGGTGGGGGAACATGGACTTGTGACTAACGAA GGTGGAATGGGGTGGGGGAACATGCACTTGTGACTAACGAA < 41bp 0.772357392882899 0.476812662927374 0.8863979 0.8657819 prediction 0.544714785765799 Functional Loss - BCORL1 ENSG00000085185 UTR3 Human protein_coding chrX:129190753 chrX:129190757 . . 0 25 hm5C_associated_SNPs_59426 0 0 1 3 129190747 129190766 mRNA hsa-miR-27b BCORL1 miRanda miRanda
5305 chrX 129190757 129190757 1 + G C rs187046748 129190753 + 129190733 129190773 41 GGTGGAATGGGGTGGGGGAACATGGACTTGTGACTAACGAA GGTGGAATGGGGTGGGGGAACATGCACTTGTGACTAACGAA < 41bp 0.772357392882899 0.476812662927374 0.8863979 0.8657819 prediction 0.544714785765799 Functional Loss - BCORL1 ENSG00000085185 UTR3 Human protein_coding chrX:129190753 chrX:129190757 . . 0 25 hm5C_associated_SNPs_59426 0 0 1 3 129190736 129190759 mRNA hsa-miR-145 BCORL1 miRanda miRanda
5306 chr7 100468075 100468075 1 + G T UCEC 100468072 + 100468052 100468092 41 GACATGAACCACCCGCCCAGCGGGGAGTACTTTGGTGAGCT GACATGAACCACCCGCCCAGCGGTGAGTACTTTGGTGAGCT < 41bp 0.77231260064447 0.375083257769993 0.8928311 0.30035648 prediction 0.54462520128894 Functional Loss - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100468072 chr7:100468075 synonymous SNV . 0 24 hm5C_associated_SNPs_59439 0 0 0 2 100468071 100468085 mRNA hsa-miR-193a-3p TRIP6 miRanda miRanda
5307 chr7 100468075 100468075 1 + G T UCEC 100468072 + 100468052 100468092 41 GACATGAACCACCCGCCCAGCGGGGAGTACTTTGGTGAGCT GACATGAACCACCCGCCCAGCGGTGAGTACTTTGGTGAGCT < 41bp 0.77231260064447 0.375083257769993 0.8928311 0.30035648 prediction 0.54462520128894 Functional Loss - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100468072 chr7:100468075 synonymous SNV . 0 24 hm5C_associated_SNPs_59439 0 0 0 2 100468074 100468085 mRNA hsa-miR-193b TRIP6 miRanda miRanda
5308 chr5 35876473 35876473 1 + A T COAD 35876469 + 35876449 35876489 41 CGCTGCCCCCTCCATTTTCTCTCCAATCTGGAATCCTGACA CGCTGCCCCCTCCATTTTCTCTCCTATCTGGAATCCTGACA < 41bp 0.77226180309213 0.450075397927414 0.96144855 0.03697574 prediction 0.54452360618426 Functional Loss - IL7R ENSG00000168685 CDS Human protein_coding chr5:35876469 chr5:35876473 nonsynonymous SNV 0.039 1 25 hm5C_associated_SNPs_59448 0 0 1 1 35876451 35876473 mRNA hsa-miR-185 IL7R miRanda miRanda
5309 chr1 149376906 149376906 1 + G T UCEC 149376904 + 149376884 149376924 41 ATACTGGTGCGAGGCTGCCACAGAGGATGGAAATGTCCTTA ATACTGGTGCGAGGCTGCCACATAGGATGGAAATGTCCTTA < 41bp 0.772131732730914 0.453076171466643 0.8188193 0.644315 prediction 0.544263465461828 Functional Loss - FCGR1CP ENSG00000253193 ncRNA_exonic Human other chr1:149376904 chr1:149376906 . . 0 23 hm5C_associated_SNPs_59481 0 0 0 1 149376887 149376909 mRNA hsa-miR-326 FCGR1C miRanda miRanda
5310 chr11 116703640 116703640 1 + G C rs5128 116703636 + 116703616 116703656 41 AGTCCACCTGCCTATCCATCCTGCGAGCTCCTTGGGTCCTG AGTCCACCTGCCTATCCATCCTGCCAGCTCCTTGGGTCCTG < 41bp 0.781956310220522 0.510167829099586 0.26468736 0.18017802 prediction 0.543576962241871 Functional Loss - APOC3 ENSG00000110245 UTR3 Human protein_coding chr11:116703636 chr11:116703640 . . 0 25 hm5C_associated_SNPs_59535 0 1 1 2 116703627 116703648 mRNA hsa-miR-28-5p APOC3 miRanda miRanda
5311 chr11 116703640 116703640 1 + G C rs5128 116703636 + 116703616 116703656 41 AGTCCACCTGCCTATCCATCCTGCGAGCTCCTTGGGTCCTG AGTCCACCTGCCTATCCATCCTGCCAGCTCCTTGGGTCCTG < 41bp 0.781956310220522 0.510167829099586 0.26468736 0.18017802 prediction 0.543576962241871 Functional Loss - APOC3 ENSG00000110245 UTR3 Human protein_coding chr11:116703636 chr11:116703640 . . 0 25 hm5C_associated_SNPs_59535 0 1 1 2 116703626 116703648 mRNA hsa-miR-708 APOC3 miRanda miRanda
5312 chr16 30096341 30096341 1 + G T COAD 30096339 + 30096319 30096359 41 AGGCTGCTCCCCAAGAGACACGGGGCATCCCCTCCAAGAAG AGGCTGCTCCCCAAGAGACACGTGGCATCCCCTCCAAGAAG < 41bp 0.86407466884232 0.592359007203752 0.87651706 0.21386048 prediction 0.543431323277135 Functional Loss - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096339 chr16:30096341 synonymous SNV . 0 23 hm5C_associated_SNPs_59554 0 0 1 1 30096318 30096341 mRNA hsa-miR-187 PPP4C miRanda miRanda
5313 chr12 21680708 21680708 1 + G C UCEC 21680704 + 21680684 21680724 41 CAGAGCCGGAGAAAGGACCTCTCCGACCGGCCACTGCCGGG CAGAGCCGGAGAAAGGACCTCTCCCACCGGCCACTGCCGGG < 41bp 0.793873783683148 0.52226728216358 0.55729234 0.1348691 prediction 0.543213003039135 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680704 chr12:21680708 nonsynonymous SNV 0.110 3 25 hm5C_associated_SNPs_59583 0 0 1 4 21680702 21680722 mRNA hsa-miR-34a C12orf39 miRanda miRanda
5314 chr12 21680708 21680708 1 + G C UCEC 21680704 + 21680684 21680724 41 CAGAGCCGGAGAAAGGACCTCTCCGACCGGCCACTGCCGGG CAGAGCCGGAGAAAGGACCTCTCCCACCGGCCACTGCCGGG < 41bp 0.793873783683148 0.52226728216358 0.55729234 0.1348691 prediction 0.543213003039135 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680704 chr12:21680708 nonsynonymous SNV 0.110 3 25 hm5C_associated_SNPs_59583 0 0 1 4 21680699 21680722 mRNA hsa-miR-34c-5p C12orf39 miRanda miRanda
5315 chr12 21680708 21680708 1 + G C UCEC 21680704 + 21680684 21680724 41 CAGAGCCGGAGAAAGGACCTCTCCGACCGGCCACTGCCGGG CAGAGCCGGAGAAAGGACCTCTCCCACCGGCCACTGCCGGG < 41bp 0.793873783683148 0.52226728216358 0.55729234 0.1348691 prediction 0.543213003039135 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680704 chr12:21680708 nonsynonymous SNV 0.110 3 25 hm5C_associated_SNPs_59583 0 0 1 4 21680701 21680722 mRNA hsa-miR-449a C12orf39 miRanda miRanda
5316 chr12 21680708 21680708 1 + G C UCEC 21680704 + 21680684 21680724 41 CAGAGCCGGAGAAAGGACCTCTCCGACCGGCCACTGCCGGG CAGAGCCGGAGAAAGGACCTCTCCCACCGGCCACTGCCGGG < 41bp 0.793873783683148 0.52226728216358 0.55729234 0.1348691 prediction 0.543213003039135 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680704 chr12:21680708 nonsynonymous SNV 0.110 3 25 hm5C_associated_SNPs_59583 0 0 1 4 21680701 21680722 mRNA hsa-miR-449b C12orf39 miRanda miRanda
5317 chr11 124789429 124789429 1 - C A UCEC 124789432 - 124789412 124789452 41 CATGTAGGGGAAAAGTTTCTCAAGAAGGTGGAAGAGGCAGC CATGTAGGGGAAAAGTTTCTCAATAAGGTGGAAGAGGCAGC < 41bp 0.829540243493451 0.558105944787283 0.6636028 0.25036392 prediction 0.542868597412335 Functional Loss - HEPN1;HEPACAM ENSG00000221932;ENSG00000165478 UTR5;UTR3 Human other chr11:124789432 chr11:124789429 . . 0 24 hm5C_associated_SNPs_59621 0 0 0 1 124789408 124789429 mRNA hsa-miR-370 HEPACAM miRanda miRanda
5318 chr7 64170271 64170271 1 + G T rs76278462 64170268 + 64170248 64170288 41 ATGCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACCTGA ATGCCAGCACTTTGGGAGGCCAATGTGGGTGGATCACCTGA < 41bp 0.868677749979882 0.597328533192482 0.89828867 0.7266293 prediction 0.5426984335748 Functional Loss - ZNF107 ENSG00000196247 UTR3 Human protein_coding chr7:64170268 chr7:64170271 . . 0 24 hm5C_associated_SNPs_59647 0 0 0 1 64170267 64170288 mRNA hsa-miR-125a-3p ZNF107 miRanda miRanda
5319 chr9 35661109 35661109 1 + G C UCEC 35661105 + 35661085 35661125 41 AAGGTGCAGCCAGGCTGTGGCAAAGGGCCCCAGTCACAGCC AAGGTGCAGCCAGGCTGTGGCAAACGGCCCCAGTCACAGCC < 41bp 0.771267925125184 0.488125995279492 0.55509543 0.3820148 prediction 0.542535850250369 Functional Loss - CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35661105 chr9:35661109 nonsynonymous SNV 0.042 1 25 hm5C_associated_SNPs_59666 0 0 1 1 35661096 35661122 mRNA hsa-miR-134 CCDC107 miRanda miRanda
5320 chr10 81904679 81904679 1 + G T SARC 81904676 + 81904656 81904696 41 ATGGCTTCTGAGCCCTGGAGCTGGAGCCCAGCAGTTGGAGG ATGGCTTCTGAGCCCTGGAGCTGTAGCCCAGCAGTTGGAGG < 41bp 0.899756641156214 0.628688404285002 0.31040043 0.24645385 prediction 0.542136473742425 Functional Loss - PLAC9 ENSG00000189129 CDS Human protein_coding chr10:81904676 chr10:81904679 nonsynonymous SNV 0.010 1 24 hm5C_associated_SNPs_59711 0 0 0 1 81904667 81904684 mRNA hsa-miR-24 PLAC9 miRanda miRanda
5321 chr20 2841419 2841419 1 + G T LUAD 2841416 + 2841396 2841436 41 CTGCAAAGTGCACCCTCCTGCTGGACTGTGCTGTGCCAGGA CTGCAAAGTGCACCCTCCTGCTGTACTGTGCTGTGCCAGGA < 41bp 0.90107633442327 0.630119624868742 0.69536227 0.26722583 prediction 0.541913419109056 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2841416 chr20:2841419 nonsynonymous SNV 0.970 4 24 hm5C_associated_SNPs_59736 0 0 0 1 2841398 2841419 mRNA hsa-miR-214 VPS16 miRanda miRanda
5322 chr22 18210208 18210208 1 + G T BLCA 18210206 + 18210186 18210226 41 GATGAAGCCCATGCCGCTGTCTGAGGGCAAGTCTATACTGC GATGAAGCCCATGCCGCTGTCTTAGGGCAAGTCTATACTGC < 41bp 0.836598620792409 0.565745170599011 0.7268668 0.29918462 prediction 0.541706900386796 Functional Loss - BCL2L13 ENSG00000099968 CDS Human protein_coding chr22:18210206 chr22:18210208 stopgain 0.434 0 23 hm5C_associated_SNPs_59755 0 0 1 1 18210202 18210223 mRNA hsa-miR-499-5p BCL2L13 miRanda miRanda
5323 chr3 124449455 124449455 1 + G T LGG 124449452 + 124449432 124449472 41 CGATCTGCGGGGCATCGTGTCTCGACCGCGTCTTCTGAGTC CGATCTGCGGGGCATCGTGTCTCTACCGCGTCTTCTGAGTC < 41bp 0.770819555786165 0.39688238020448 0.37690824 0.9125051 prediction 0.54163911157233 Functional Loss - UMPS ENSG00000114491 CDS Human protein_coding chr3:124449452 chr3:124449455 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_59762 0 0 1 1 124449449 124449473 mRNA hsa-miR-383 UMPS miRanda miRanda
5324 chr10 79814760 79814760 1 + G T CHOL 79814757 + 79814737 79814777 41 CACCTTCCTGCCTCTCTGGTCTGGGCCACTAATGTCACTGC CACCTTCCTGCCTCTCTGGTCTGTGCCACTAATGTCACTGC < 41bp 0.770805495573021 0.379867212414808 0.06091118 0.033373922 prediction 0.541610991146041 Functional Loss - RPS24 ENSG00000138326 CDS Human protein_coding chr10:79814757 chr10:79814760 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_59765 0 0 1 4 79814758 79814779 mRNA hsa-miR-34a RPS24 miRanda miRanda
5325 chr10 79814760 79814760 1 + G T CHOL 79814757 + 79814737 79814777 41 CACCTTCCTGCCTCTCTGGTCTGGGCCACTAATGTCACTGC CACCTTCCTGCCTCTCTGGTCTGTGCCACTAATGTCACTGC < 41bp 0.770805495573021 0.379867212414808 0.06091118 0.033373922 prediction 0.541610991146041 Functional Loss - RPS24 ENSG00000138326 CDS Human protein_coding chr10:79814757 chr10:79814760 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_59765 0 0 1 4 79814758 79814779 mRNA hsa-miR-34c-5p RPS24 miRanda miRanda
5326 chr10 79814760 79814760 1 + G T CHOL 79814757 + 79814737 79814777 41 CACCTTCCTGCCTCTCTGGTCTGGGCCACTAATGTCACTGC CACCTTCCTGCCTCTCTGGTCTGTGCCACTAATGTCACTGC < 41bp 0.770805495573021 0.379867212414808 0.06091118 0.033373922 prediction 0.541610991146041 Functional Loss - RPS24 ENSG00000138326 CDS Human protein_coding chr10:79814757 chr10:79814760 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_59765 0 0 1 4 79814757 79814779 mRNA hsa-miR-449a RPS24 miRanda miRanda
5327 chr10 79814760 79814760 1 + G T CHOL 79814757 + 79814737 79814777 41 CACCTTCCTGCCTCTCTGGTCTGGGCCACTAATGTCACTGC CACCTTCCTGCCTCTCTGGTCTGTGCCACTAATGTCACTGC < 41bp 0.770805495573021 0.379867212414808 0.06091118 0.033373922 prediction 0.541610991146041 Functional Loss - RPS24 ENSG00000138326 CDS Human protein_coding chr10:79814757 chr10:79814760 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_59765 0 0 1 4 79814757 79814779 mRNA hsa-miR-449b RPS24 miRanda miRanda
5328 chr7 12665407 12665407 1 + G T UCEC 12665404 + 12665384 12665424 41 TAGGTAAAGATGCTAATCCCCAAGAGAGGAAGGCTGCAATG TAGGTAAAGATGCTAATCCCCAATAGAGGAAGGCTGCAATG < 41bp 0.770583201559392 0.391280209664988 0.41118792 0.021646291 prediction 0.541166403118784 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12665404 chr7:12665407 stopgain 1.000 1 24 hm5C_associated_SNPs_59815 0 0 1 2 12665404 12665424 mRNA hsa-miR-25 SCIN miRanda miRanda
5329 chr7 12665407 12665407 1 + G T UCEC 12665404 + 12665384 12665424 41 TAGGTAAAGATGCTAATCCCCAAGAGAGGAAGGCTGCAATG TAGGTAAAGATGCTAATCCCCAATAGAGGAAGGCTGCAATG < 41bp 0.770583201559392 0.391280209664988 0.41118792 0.021646291 prediction 0.541166403118784 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12665404 chr7:12665407 stopgain 1.000 1 24 hm5C_associated_SNPs_59815 0 0 1 2 12665402 12665424 mRNA hsa-miR-32 SCIN miRanda miRanda
5330 chr2 66775122 66775122 1 + G T ESCA 66775119 + 66775099 66775139 41 AAAAAGCAGTTGGCACAAGACACGGGACTCACCATCCTTCA AAAAAGCAGTTGGCACAAGACACTGGACTCACCATCCTTCA < 41bp 0.77056873219673 0.402594531715386 0.31060582 0.15942666 prediction 0.541137464393459 Functional Loss - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66775119 chr2:66775122 synonymous SNV . 0 24 hm5C_associated_SNPs_59820 0 0 0 1 66775101 66775123 mRNA hsa-miR-187 MEIS1 miRanda miRanda
5331 chr5 35876471 35876471 1 + C T SKCM 35876469 + 35876449 35876489 41 CGCTGCCCCCTCCATTTTCTCTCCAATCTGGAATCCTGACA CGCTGCCCCCTCCATTTTCTCTTCAATCTGGAATCCTGACA < 41bp 0.77226180309213 0.501872773109864 0.96144855 0.16834965 prediction 0.540778059964533 Functional Loss - IL7R ENSG00000168685 CDS Human protein_coding chr5:35876469 chr5:35876471 synonymous SNV . 0 23 hm5C_associated_SNPs_59865 0 0 1 1 35876451 35876473 mRNA hsa-miR-185 IL7R miRanda miRanda
5332 chr17 27186093 27186093 1 + G T UCEC 27186090 + 27186070 27186110 41 ACATTATCCGAGAGAAGCTCCTAGAACACCTGCCCCAGGAG ACATTATCCGAGAGAAGCTCCTATAACACCTGCCCCAGGAG < 41bp 0.770367586209765 0.38110755775687 0.28908074 0.69807535 prediction 0.54073517241953 Functional Loss - ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27186090 chr17:27186093 stopgain 0.951 1 24 hm5C_associated_SNPs_59870 0 0 1 3 27186082 27186104 mRNA hsa-miR-34a ERAL1 miRanda miRanda
5333 chr17 27186093 27186093 1 + G T UCEC 27186090 + 27186070 27186110 41 ACATTATCCGAGAGAAGCTCCTAGAACACCTGCCCCAGGAG ACATTATCCGAGAGAAGCTCCTATAACACCTGCCCCAGGAG < 41bp 0.770367586209765 0.38110755775687 0.28908074 0.69807535 prediction 0.54073517241953 Functional Loss - ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27186090 chr17:27186093 stopgain 0.951 1 24 hm5C_associated_SNPs_59870 0 0 1 3 27186082 27186104 mRNA hsa-miR-449a ERAL1 miRanda miRanda
5334 chr17 27186093 27186093 1 + G T UCEC 27186090 + 27186070 27186110 41 ACATTATCCGAGAGAAGCTCCTAGAACACCTGCCCCAGGAG ACATTATCCGAGAGAAGCTCCTATAACACCTGCCCCAGGAG < 41bp 0.770367586209765 0.38110755775687 0.28908074 0.69807535 prediction 0.54073517241953 Functional Loss - ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27186090 chr17:27186093 stopgain 0.951 1 24 hm5C_associated_SNPs_59870 0 0 1 3 27186082 27186104 mRNA hsa-miR-449b ERAL1 miRanda miRanda
5335 chr17 4060579 4060579 1 + G T rs3087605 4060577 + 4060557 4060597 41 GGGACAGCCGGCCACCTGCCCAGTACTGGTCAGCTTTTCAA GGGACAGCCGGCCACCTGCCCATTACTGGTCAGCTTTTCAA < 41bp 0.770177051553979 0.44121373357325 0.17702743 0.03185591 prediction 0.540354103107959 Functional Loss - CYB5D2 ENSG00000167740 UTR3 Human protein_coding chr17:4060577 chr17:4060579 . . 0 23 hm5C_associated_SNPs_59901 0 0 0 4 4060572 4060594 mRNA hsa-miR-320a CYB5D2 miRanda miRanda
5336 chr17 4060579 4060579 1 + G T rs3087605 4060577 + 4060557 4060597 41 GGGACAGCCGGCCACCTGCCCAGTACTGGTCAGCTTTTCAA GGGACAGCCGGCCACCTGCCCATTACTGGTCAGCTTTTCAA < 41bp 0.770177051553979 0.44121373357325 0.17702743 0.03185591 prediction 0.540354103107959 Functional Loss - CYB5D2 ENSG00000167740 UTR3 Human protein_coding chr17:4060577 chr17:4060579 . . 0 23 hm5C_associated_SNPs_59901 0 0 0 4 4060572 4060594 mRNA hsa-miR-320b CYB5D2 miRanda miRanda
5337 chr17 4060579 4060579 1 + G T rs3087605 4060577 + 4060557 4060597 41 GGGACAGCCGGCCACCTGCCCAGTACTGGTCAGCTTTTCAA GGGACAGCCGGCCACCTGCCCATTACTGGTCAGCTTTTCAA < 41bp 0.770177051553979 0.44121373357325 0.17702743 0.03185591 prediction 0.540354103107959 Functional Loss - CYB5D2 ENSG00000167740 UTR3 Human protein_coding chr17:4060577 chr17:4060579 . . 0 23 hm5C_associated_SNPs_59901 0 0 0 4 4060575 4060594 mRNA hsa-miR-320c CYB5D2 miRanda miRanda
5338 chr17 4060579 4060579 1 + G T rs3087605 4060577 + 4060557 4060597 41 GGGACAGCCGGCCACCTGCCCAGTACTGGTCAGCTTTTCAA GGGACAGCCGGCCACCTGCCCATTACTGGTCAGCTTTTCAA < 41bp 0.770177051553979 0.44121373357325 0.17702743 0.03185591 prediction 0.540354103107959 Functional Loss - CYB5D2 ENSG00000167740 UTR3 Human protein_coding chr17:4060577 chr17:4060579 . . 0 23 hm5C_associated_SNPs_59901 0 0 0 4 4060576 4060594 mRNA hsa-miR-320d CYB5D2 miRanda miRanda
5339 chr10 115348747 115348747 1 + G C STAD 115348743 + 115348723 115348763 41 GTGGACATGGCTCACAACAGCAGGGCCTTCTTCTTTTTGAC GTGGACATGGCTCACAACAGCAGGCCCTTCTTCTTTTTGAC < 41bp 0.795994763424503 0.525822616599979 0.9068575 0.6555964 prediction 0.540344293649049 Functional Loss - NRAP ENSG00000197893 CDS Human protein_coding chr10:115348743 chr10:115348747 nonsynonymous SNV 0.866 1 25 hm5C_associated_SNPs_59903 0 0 0 1 115348726 115348747 mRNA hsa-miR-370 HABP2 miRanda miRanda
5340 chr8 96044275 96044275 1 + C T STAD 96044273 + 96044253 96044293 41 CCTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCAC CCTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCAC < 41bp 0.773224144333249 0.503140793984422 0.3201416 0.25765988 prediction 0.540166700697656 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044273 chr8:96044275 stopgain 0.994 0 23 hm5C_associated_SNPs_59916 0 0 1 8 96044272 96044294 mRNA hsa-miR-19a C8orf38 miRanda miRanda
5341 chr8 96044275 96044275 1 + C T STAD 96044273 + 96044253 96044293 41 CCTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCAC CCTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCAC < 41bp 0.773224144333249 0.503140793984422 0.3201416 0.25765988 prediction 0.540166700697656 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044273 chr8:96044275 stopgain 0.994 0 23 hm5C_associated_SNPs_59916 0 0 1 8 96044272 96044294 mRNA hsa-miR-19b C8orf38 miRanda miRanda
5342 chr8 96044275 96044275 1 + C T STAD 96044273 + 96044253 96044293 41 CCTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCAC CCTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCAC < 41bp 0.773224144333249 0.503140793984422 0.3201416 0.25765988 prediction 0.540166700697656 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044273 chr8:96044275 stopgain 0.994 0 23 hm5C_associated_SNPs_59916 0 0 1 8 96044274 96044296 mRNA hsa-miR-148a C8orf38 miRanda miRanda
5343 chr8 96044275 96044275 1 + C T STAD 96044273 + 96044253 96044293 41 CCTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCAC CCTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCAC < 41bp 0.773224144333249 0.503140793984422 0.3201416 0.25765988 prediction 0.540166700697656 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044273 chr8:96044275 stopgain 0.994 0 23 hm5C_associated_SNPs_59916 0 0 1 8 96044275 96044296 mRNA hsa-miR-152 C8orf38 miRanda miRanda
5344 chr8 96044275 96044275 1 + C T STAD 96044273 + 96044253 96044293 41 CCTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCAC CCTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCAC < 41bp 0.773224144333249 0.503140793984422 0.3201416 0.25765988 prediction 0.540166700697656 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044273 chr8:96044275 stopgain 0.994 0 23 hm5C_associated_SNPs_59916 0 0 1 8 96044273 96044295 mRNA hsa-miR-301a C8orf38 miRanda miRanda
5345 chr8 96044275 96044275 1 + C T STAD 96044273 + 96044253 96044293 41 CCTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCAC CCTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCAC < 41bp 0.773224144333249 0.503140793984422 0.3201416 0.25765988 prediction 0.540166700697656 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044273 chr8:96044275 stopgain 0.994 0 23 hm5C_associated_SNPs_59916 0 0 1 8 96044274 96044296 mRNA hsa-miR-148b C8orf38 miRanda miRanda
5346 chr8 96044275 96044275 1 + C T STAD 96044273 + 96044253 96044293 41 CCTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCAC CCTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCAC < 41bp 0.773224144333249 0.503140793984422 0.3201416 0.25765988 prediction 0.540166700697656 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044273 chr8:96044275 stopgain 0.994 0 23 hm5C_associated_SNPs_59916 0 0 1 8 96044270 96044295 mRNA hsa-miR-454 C8orf38 miRanda miRanda
5347 chr8 96044275 96044275 1 + C T STAD 96044273 + 96044253 96044293 41 CCTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCAC CCTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCAC < 41bp 0.773224144333249 0.503140793984422 0.3201416 0.25765988 prediction 0.540166700697656 Functional Loss - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044273 chr8:96044275 stopgain 0.994 0 23 hm5C_associated_SNPs_59916 0 0 1 8 96044273 96044295 mRNA hsa-miR-301b C8orf38 miRanda miRanda
5348 chr9 130472919 130472919 1 + A C UCEC 130472915 + 130472895 130472935 41 CCCTGGAGGAGTTCCGGCTGCAGAAAGAGGAGGTCACGGAC CCCTGGAGGAGTTCCGGCTGCAGACAGAGGAGGTCACGGAC < 41bp 0.770036776774633 0.373370495812462 0.7360101 0.64450246 prediction 0.540073553549266 Functional Loss - CFAP157 ENSG00000160401 CDS Human protein_coding chr9:130472915 chr9:130472919 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_59932 0 0 0 1 130472899 130472920 mRNA hsa-miR-544 C9orf117 miRanda miRanda
5349 chr19 14041304 14041304 1 + G T rs140566596 14041302 + 14041282 14041322 41 GAACCAGACAAGCAGACAATCAGCGGACAATCGGTTCTGGA GAACCAGACAAGCAGACAATCATCGGACAATCGGTTCTGGA < 41bp 0.848787161978292 0.578853779510108 0.9172479 0.4187678 prediction 0.539866764936369 Functional Loss - CC2D1A ENSG00000132024 UTR3 Human protein_coding chr19:14041302 chr19:14041304 . . 0 23 hm5C_associated_SNPs_59951 0 0 1 1 14041294 14041314 mRNA hsa-miR-219-5p CC2D1A miRanda miRanda
5350 chr7 99956677 99956677 1 + G T LUAD 99956674 + 99956654 99956694 41 AGGCAGCAGTTGCAGTCCATCAAGGGGACCAAACTCACCAT AGGCAGCAGTTGCAGTCCATCAATGGGACCAAACTCACCAT < 41bp 0.90663829797207 0.636762939682143 0.9373878 0.66351616 prediction 0.539750716579854 Functional Loss - PILRB ENSG00000121716 CDS Human protein_coding chr7:99956674 chr7:99956677 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_59961 0 0 1 2 99956665 99956686 mRNA hsa-miR-133a PILRB miRanda miRanda
5351 chr7 99956677 99956677 1 + G T LUAD 99956674 + 99956654 99956694 41 AGGCAGCAGTTGCAGTCCATCAAGGGGACCAAACTCACCAT AGGCAGCAGTTGCAGTCCATCAATGGGACCAAACTCACCAT < 41bp 0.90663829797207 0.636762939682143 0.9373878 0.66351616 prediction 0.539750716579854 Functional Loss - PILRB ENSG00000121716 CDS Human protein_coding chr7:99956674 chr7:99956677 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_59961 0 0 1 2 99956665 99956686 mRNA hsa-miR-133b PILRB miRanda miRanda
5352 chr1 150117140 150117140 1 + G C rs151124746 150117136 + 150117116 150117156 41 TGGCACAGACACAAGACTCCCAGAGTTGTCCTAACAATAAG TGGCACAGACACAAGACTCCCAGACTTGTCCTAACAATAAG < 41bp 0.801208957525475 0.531463333514988 0.830629 0.3569759 prediction 0.539491248020974 Functional Loss - VPS45 ENSG00000136631 UTR3 Human protein_coding chr1:150117136 chr1:150117140 . . 0 25 hm5C_associated_SNPs_59992 0 0 1 2 150117117 150117141 mRNA hsa-miR-330-5p VPS45 miRanda miRanda
5353 chr1 150117140 150117140 1 + G C rs151124746 150117136 + 150117116 150117156 41 TGGCACAGACACAAGACTCCCAGAGTTGTCCTAACAATAAG TGGCACAGACACAAGACTCCCAGACTTGTCCTAACAATAAG < 41bp 0.801208957525475 0.531463333514988 0.830629 0.3569759 prediction 0.539491248020974 Functional Loss - VPS45 ENSG00000136631 UTR3 Human protein_coding chr1:150117136 chr1:150117140 . . 0 25 hm5C_associated_SNPs_59992 0 0 1 2 150117122 150117141 mRNA hsa-miR-326 VPS45 miRanda miRanda
5354 chr14 23846561 23846561 1 + A T LUAD 23846557 + 23846537 23846577 41 ACAAGGCCTTCCTCACCTCCCACAAGGGCATCCTGCTGGAA ACAAGGCCTTCCTCACCTCCCACATGGGCATCCTGCTGGAA < 41bp 0.769723530126374 0.446468265598179 0.19378889 0.2639019 prediction 0.539447060252747 Functional Loss - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23846557 chr14:23846561 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_60004 0 0 0 1 23846554 23846575 mRNA hsa-miR-214 CMTM5 miRanda miRanda
5355 chr9 75435868 75435868 1 + G T UCEC 75435866 + 75435846 75435886 41 TGCTGCAATGTTCCTGAGGCCAGGGTCTTCAAAGCTTCCAG TGCTGCAATGTTCCTGAGGCCATGGTCTTCAAAGCTTCCAG < 41bp 0.76962807186854 0.428273797642732 0.3040568 0.09452662 prediction 0.53925614373708 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75435866 chr9:75435868 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_60019 0 0 0 1 75435853 75435873 mRNA hsa-miR-504 TMC1 miRanda miRanda
5356 chr11 7678141 7678141 1 + G C rs141533515 7678137 + 7678117 7678157 41 GCAAGCCCAGTCCGGGCTGGCAGGGTGTCTCAGACAGGCTG GCAAGCCCAGTCCGGGCTGGCAGGCTGTCTCAGACAGGCTG < 41bp 0.812010310076092 0.542582382174419 0.9090957 0.7284893 prediction 0.538855855803345 Functional Loss - PPFIBP2;CYB5R2 ENSG00000166387;ENSG00000166394 intergenic Human other chr11:7678137 chr11:7678141 . . 0 25 hm5C_associated_SNPs_60067 0 0 0 1 7678135 7678155 mRNA hsa-miR-370 PPFIBP2 miRanda miRanda
5357 chr11 134177050 134177050 1 + G T STAD 134177047 + 134177027 134177067 41 CCCCTTCTGATTATGGAATACTGGGTCGGCTGGTTCGACAG CCCCTTCTGATTATGGAATACTGTGTCGGCTGGTTCGACAG < 41bp 0.769320053572684 0.369816270033278 0.51792365 0.11213347 prediction 0.538640107145369 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134177047 chr11:134177050 nonsynonymous SNV 0.730 4 24 hm5C_associated_SNPs_60086 0 0 0 2 134177035 134177055 mRNA hsa-miR-551a GLB1L3 miRanda miRanda
5358 chr11 134177050 134177050 1 + G T STAD 134177047 + 134177027 134177067 41 CCCCTTCTGATTATGGAATACTGGGTCGGCTGGTTCGACAG CCCCTTCTGATTATGGAATACTGTGTCGGCTGGTTCGACAG < 41bp 0.769320053572684 0.369816270033278 0.51792365 0.11213347 prediction 0.538640107145369 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134177047 chr11:134177050 nonsynonymous SNV 0.730 4 24 hm5C_associated_SNPs_60086 0 0 0 2 134177034 134177055 mRNA hsa-miR-551b GLB1L3 miRanda miRanda
5359 chr4 25351147 25351147 1 + G T LUAD 25351144 + 25351124 25351164 41 AAGTATGCAGAGCATTTTTACAGGAAGATAAAGGCGAAGGA AAGTATGCAGAGCATTTTTACAGTAAGATAAAGGCGAAGGA < 41bp 0.809443933121422 0.540231880319032 0.56120205 0.31644636 prediction 0.53842410560478 Functional Loss - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25351144 chr4:25351147 stopgain 1.000 1 24 hm5C_associated_SNPs_60107 0 0 1 3 25351139 25351161 mRNA hsa-miR-204 ZCCHC4 miRanda miRanda
5360 chr4 25351147 25351147 1 + G T LUAD 25351144 + 25351124 25351164 41 AAGTATGCAGAGCATTTTTACAGGAAGATAAAGGCGAAGGA AAGTATGCAGAGCATTTTTACAGTAAGATAAAGGCGAAGGA < 41bp 0.809443933121422 0.540231880319032 0.56120205 0.31644636 prediction 0.53842410560478 Functional Loss - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25351144 chr4:25351147 stopgain 1.000 1 24 hm5C_associated_SNPs_60107 0 0 1 3 25351139 25351161 mRNA hsa-miR-211 ZCCHC4 miRanda miRanda
5361 chr4 25351147 25351147 1 + G T LUAD 25351144 + 25351124 25351164 41 AAGTATGCAGAGCATTTTTACAGGAAGATAAAGGCGAAGGA AAGTATGCAGAGCATTTTTACAGTAAGATAAAGGCGAAGGA < 41bp 0.809443933121422 0.540231880319032 0.56120205 0.31644636 prediction 0.53842410560478 Functional Loss - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25351144 chr4:25351147 stopgain 1.000 1 24 hm5C_associated_SNPs_60107 0 0 1 3 25351127 25351148 mRNA hsa-miR-486-5p ZCCHC4 miRanda miRanda
5362 chr2 226516204 226516204 1 + C T LUAD 226516202 + 226516182 226516222 41 GTCGACGTCAGGTGTGCCTCCTCCATCAGTCACTCCCCTCA GTCGACGTCAGGTGTGCCTCCTTCATCAGTCACTCCCCTCA < 41bp 0.769034135112937 0.487138404478074 0.9510297 0.40374497 prediction 0.538068270225875 Functional Loss - NYAP2 ENSG00000144460 CDS Human protein_coding chr2:226516202 chr2:226516204 nonsynonymous SNV 0.779 3 23 hm5C_associated_SNPs_60145 0 0 0 1 226516194 226516215 mRNA hsa-miR-134 KIAA1486 miRanda miRanda
5363 chr13 37007342 37007342 1 + G T COAD 37007340 + 37007320 37007360 41 CTAACTGCAAATGGGCAGTACAGGAGGACCTGTGGCCAGGT CTAACTGCAAATGGGCAGTACATGAGGACCTGTGGCCAGGT < 41bp 0.869945210291453 0.600988744580138 0.9096321 0.5858683 prediction 0.537912931422631 Functional Loss - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37007340 chr13:37007342 nonsynonymous SNV 0.879 2 23 hm5C_associated_SNPs_60158 0 0 0 1 37007323 37007344 mRNA hsa-miR-486-5p CCNA1 miRanda miRanda
5364 chr1 20412623 20412623 1 + G C BLCA 20412622 + 20412602 20412642 41 CTGGACCTAAAATCAATGATCGAGAAGGTGACAGGGAAGAA CTGGACCTAAAATCAATGATCCAGAAGGTGACAGGGAAGAA < 41bp 0.840432667377769 0.57148055179783 0.47413757 0.2965351 prediction 0.537904231159878 Functional Loss - PLA2G5 ENSG00000127472 CDS Human protein_coding chr1:20412622 chr1:20412623 nonsynonymous SNV 0.542 0 22 hm5C_associated_SNPs_60160 0 0 0 1 20412616 20412638 mRNA hsa-miR-339-5p PLA2G5 miRanda miRanda
5365 chr8 11683626 11683626 1 + G T GBM 11683624 + 11683604 11683644 41 CCCCTTAGTTGGTGAAGATACAGAACGTGCCAACTCTATGG CCCCTTAGTTGGTGAAGATACATAACGTGCCAACTCTATGG < 41bp 0.851598485485299 0.582654576254117 0.07065469 0.03715557 prediction 0.537887818462364 Functional Loss - FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11683624 chr8:11683626 stopgain 0.182 1 23 hm5C_associated_SNPs_60162 0 0 1 2 11683614 11683637 mRNA hsa-miR-96 FDFT1 miRanda miRanda
5366 chr8 11683626 11683626 1 + G T GBM 11683624 + 11683604 11683644 41 CCCCTTAGTTGGTGAAGATACAGAACGTGCCAACTCTATGG CCCCTTAGTTGGTGAAGATACATAACGTGCCAACTCTATGG < 41bp 0.851598485485299 0.582654576254117 0.07065469 0.03715557 prediction 0.537887818462364 Functional Loss - FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11683624 chr8:11683626 stopgain 0.182 1 23 hm5C_associated_SNPs_60162 0 0 1 2 11683616 11683637 mRNA hsa-miR-1271 FDFT1 miRanda miRanda
5367 chr5 162944664 162944664 1 + G T SARC 162944662 + 162944642 162944682 41 GCAGATGCCTTCAACCTCCCCAGCAGTCACTTAAGACCTGT GCAGATGCCTTCAACCTCCCCATCAGTCACTTAAGACCTGT < 41bp 0.835520911532874 0.56661696401956 0.20051968 0.052256405 prediction 0.537807895026629 Functional Loss - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162944662 chr5:162944664 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_60174 0 0 1 1 162944651 162944672 mRNA hsa-miR-134 MAT2B miRanda miRanda
5368 chr10 20436753 20436753 1 + G T STAD 20436751 + 20436731 20436771 41 AGTGGGACCATGTACATCTCCAGGATAATTATAACCTGGGA AGTGGGACCATGTACATCTCCATGATAATTATAACCTGGGA < 41bp 0.768884847432766 0.44780477011292 0.50192857 0.115753114 prediction 0.537769694865531 Functional Loss - PLXDC2 ENSG00000120594 CDS Human protein_coding chr10:20436751 chr10:20436753 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_60178 0 0 1 2 20436749 20436768 mRNA hsa-miR-154 PLXDC2 miRanda miRanda
5369 chr10 20436753 20436753 1 + G T STAD 20436751 + 20436731 20436771 41 AGTGGGACCATGTACATCTCCAGGATAATTATAACCTGGGA AGTGGGACCATGTACATCTCCATGATAATTATAACCTGGGA < 41bp 0.768884847432766 0.44780477011292 0.50192857 0.115753114 prediction 0.537769694865531 Functional Loss - PLXDC2 ENSG00000120594 CDS Human protein_coding chr10:20436751 chr10:20436753 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_60178 0 0 1 2 20436736 20436757 mRNA hsa-miR-490-3p PLXDC2 miRanda miRanda
5370 chr3 38316550 38316550 1 + G T LUAD 38316547 + 38316527 38316567 41 GCCCAGTGCAACTTCTCCCTCGGGCAGATGGTGCTTGCGGG GCCCAGTGCAACTTCTCCCTCGGTCAGATGGTGCTTGCGGG < 41bp 0.768880501632501 0.359718756255366 0.858438 0.1890131 prediction 0.537761003265002 Functional Loss - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38316547 chr3:38316550 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_60179 0 0 0 3 38316541 38316562 mRNA hsa-miR-29a SLC22A13 miRanda miRanda
5371 chr3 38316550 38316550 1 + G T LUAD 38316547 + 38316527 38316567 41 GCCCAGTGCAACTTCTCCCTCGGGCAGATGGTGCTTGCGGG GCCCAGTGCAACTTCTCCCTCGGTCAGATGGTGCTTGCGGG < 41bp 0.768880501632501 0.359718756255366 0.858438 0.1890131 prediction 0.537761003265002 Functional Loss - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38316547 chr3:38316550 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_60179 0 0 0 3 38316540 38316562 mRNA hsa-miR-29b SLC22A13 miRanda miRanda
5372 chr3 38316550 38316550 1 + G T LUAD 38316547 + 38316527 38316567 41 GCCCAGTGCAACTTCTCCCTCGGGCAGATGGTGCTTGCGGG GCCCAGTGCAACTTCTCCCTCGGTCAGATGGTGCTTGCGGG < 41bp 0.768880501632501 0.359718756255366 0.858438 0.1890131 prediction 0.537761003265002 Functional Loss - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38316547 chr3:38316550 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_60179 0 0 0 3 38316541 38316562 mRNA hsa-miR-29c SLC22A13 miRanda miRanda
5373 chr19 2426037 2426037 1 - C A rs7252121 2426040 - 2426020 2426060 41 AGCCTCTCACAGCTGCCACCCGGGTATAGACACCTGGGAAG AGCCTCTCACAGCTGCCACCCGGTTATAGACACCTGGGAAG < 41bp 0.768831704464956 0.412436351567865 0.8415084 0.26603594 prediction 0.537663408929911 Functional Loss - TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2426040 chr19:2426037 nonsynonymous SNV 0.590 4 24 hm5C_associated_SNPs_60189 0 0 1 1 2426023 2426046 mRNA hsa-miR-199b-5p TIMM13 miRanda miRanda
5374 chr17 3564073 3564073 1 + A C rs3826496 3564069 + 3564049 3564089 41 AGGGCACTTTGCTGCCACCGCTGCATTCCCAGAGATCAAGC AGGGCACTTTGCTGCCACCGCTGCCTTCCCAGAGATCAAGC < 41bp 0.768622270404464 0.357880531121995 0.29029194 0.3369881 prediction 0.537244540808928 Functional Loss - CTNS ENSG00000040531 UTR3 Human protein_coding chr17:3564069 chr17:3564073 . . 0 25 hm5C_associated_SNPs_60229 0 0 0 2 3564062 3564083 mRNA hsa-miR-330-5p CTNS miRanda miRanda
5375 chr17 3564073 3564073 1 + A C rs3826496 3564069 + 3564049 3564089 41 AGGGCACTTTGCTGCCACCGCTGCATTCCCAGAGATCAAGC AGGGCACTTTGCTGCCACCGCTGCCTTCCCAGAGATCAAGC < 41bp 0.768622270404464 0.357880531121995 0.29029194 0.3369881 prediction 0.537244540808928 Functional Loss - CTNS ENSG00000040531 UTR3 Human protein_coding chr17:3564069 chr17:3564073 . . 0 25 hm5C_associated_SNPs_60229 0 0 0 2 3564064 3564083 mRNA hsa-miR-326 CTNS miRanda miRanda
5376 chr3 179322609 179322609 1 + G C OV 179322608 + 179322588 179322628 41 CCTGCCCGTAGTAGCCATGGCGGCCATGAGTTTGTTGCGGC CCTGCCCGTAGTAGCCATGGCCGCCATGAGTTTGTTGCGGC < 41bp 0.795604732103193 0.527249950894952 0.36900038 0.26631418 prediction 0.536709562416483 Functional Loss - NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179322608 chr3:179322609 synonymous SNV . 0 22 hm5C_associated_SNPs_60283 0 0 1 1 179322600 179322624 mRNA hsa-miR-495 NDUFB5 miRanda miRanda
5377 chr8 80553695 80553695 1 + A T SKCM 80553691 + 80553671 80553711 41 GAAGCCACCATCTCCTATCTCAGAAGCCCCACGAACTTTAG GAAGCCACCATCTCCTATCTCAGATGCCCCACGAACTTTAG < 41bp 0.847754270366363 0.579759201338929 0.9237058 0.91511875 prediction 0.535990138054867 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80553691 chr8:80553695 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_60375 0 0 0 1 80553682 80553703 mRNA hsa-miR-491-5p STMN2 miRanda miRanda
5378 chr7 104747985 104747985 1 + C T UCEC 104747983 + 104747963 104748003 41 TGTCAGACCTTCAGCTAGGACTCGATGCAGTTGAGCCAACT TGTCAGACCTTCAGCTAGGACTTGATGCAGTTGAGCCAACT < 41bp 0.79793590533141 0.52999572970636 0.847818 0.3795982 prediction 0.535880351250101 Functional Loss - KMT2E ENSG00000005483 CDS Human protein_coding chr7:104747983 chr7:104747985 synonymous SNV . 0 23 hm5C_associated_SNPs_60381 0 0 1 2 104747985 104748007 mRNA hsa-miR-34a MLL5 miRanda miRanda
5379 chr7 104747985 104747985 1 + C T UCEC 104747983 + 104747963 104748003 41 TGTCAGACCTTCAGCTAGGACTCGATGCAGTTGAGCCAACT TGTCAGACCTTCAGCTAGGACTTGATGCAGTTGAGCCAACT < 41bp 0.79793590533141 0.52999572970636 0.847818 0.3795982 prediction 0.535880351250101 Functional Loss - KMT2E ENSG00000005483 CDS Human protein_coding chr7:104747983 chr7:104747985 synonymous SNV . 0 23 hm5C_associated_SNPs_60381 0 0 1 2 104747972 104747994 mRNA hsa-miR-217 MLL5 miRanda miRanda
5380 chr6 44114611 44114611 1 + C T rs142029936 44114609 + 44114589 44114629 41 CCTACCCCAACTGCACAGTTCTCGAAGCCCGCCCGTGTTAC CCTACCCCAACTGCACAGTTCTTGAAGCCCGCCCGTGTTAC < 41bp 0.81241601459487 0.544554624747181 0.94347405 0.36083162 prediction 0.535722779695378 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44114609 chr6:44114611 synonymous SNV . 0 23 hm5C_associated_SNPs_60392 0 0 1 2 44114592 44114612 mRNA hsa-miR-146a TMEM63B miRanda miRanda
5381 chr6 44114611 44114611 1 + C T rs142029936 44114609 + 44114589 44114629 41 CCTACCCCAACTGCACAGTTCTCGAAGCCCGCCCGTGTTAC CCTACCCCAACTGCACAGTTCTTGAAGCCCGCCCGTGTTAC < 41bp 0.81241601459487 0.544554624747181 0.94347405 0.36083162 prediction 0.535722779695378 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44114609 chr6:44114611 synonymous SNV . 0 23 hm5C_associated_SNPs_60392 0 0 1 2 44114591 44114612 mRNA hsa-miR-146b-5p TMEM63B miRanda miRanda
5382 chr17 30521050 30521050 1 + G T UCEC 30521047 + 30521027 30521067 41 TTTTTATCCAGAGAGGGAGACACGAAACTACTTGGACTGTG TTTTTATCCAGAGAGGGAGACACTAAACTACTTGGACTGTG < 41bp 0.767707562670065 0.412029318632785 0.9159324 0.88258886 prediction 0.53541512534013 Functional Loss - RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30521047 chr17:30521050 stopgain 1.000 1 24 hm5C_associated_SNPs_60429 0 0 1 1 30521030 30521051 mRNA hsa-miR-187 RHOT1 miRanda miRanda
5383 chr10 129839198 129839198 1 + G T COAD 129839196 + 129839176 129839216 41 GGTTTTAGCTTGCCGCTCGCCAGGGCTCTCAGGGGCAACGA GGTTTTAGCTTGCCGCTCGCCATGGCTCTCAGGGGCAACGA < 41bp 0.886215277947182 0.618782253983921 0.92510945 0.15079892 prediction 0.534866047926523 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129839196 chr10:129839198 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_60489 0 0 0 2 129839188 129839210 mRNA hsa-miR-125b PTPRE miRanda miRanda
5384 chr10 129839198 129839198 1 + G T COAD 129839196 + 129839176 129839216 41 GGTTTTAGCTTGCCGCTCGCCAGGGCTCTCAGGGGCAACGA GGTTTTAGCTTGCCGCTCGCCATGGCTCTCAGGGGCAACGA < 41bp 0.886215277947182 0.618782253983921 0.92510945 0.15079892 prediction 0.534866047926523 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129839196 chr10:129839198 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_60489 0 0 0 2 129839187 129839210 mRNA hsa-miR-125a-5p PTPRE miRanda miRanda
5385 chr1 180243923 180243923 1 + G C rs547140594 180243919 + 180243899 180243939 41 CAGTGGGAGAGCAGACTCATCTCAGAACACAGCACAGGGGG CAGTGGGAGAGCAGACTCATCTCACAACACAGCACAGGGGG < 41bp 0.767395317065317 0.489715473912506 0.32667738 0.1112386 prediction 0.534790634130635 Functional Loss - LHX4 ENSG00000230124 ncRNA_exonic Human protein_coding chr1:180243919 chr1:180243923 . . 0 25 hm5C_associated_SNPs_60499 0 0 0 1 180243914 180243935 mRNA hsa-miR-218 LHX4 miRanda miRanda
5386 chr16 30016612 30016612 1 + G T UCEC 30016609 + 30016589 30016629 41 CCCTGGCCGGGGTTCTGGGGCTGGGGTCGGGACAACCCTGA CCCTGGCCGGGGTTCTGGGGCTGTGGTCGGGACAACCCTGA < 41bp 0.87375562934492 0.606414171550689 0.9083338 0.8416113 prediction 0.534682915588461 Functional Loss - INO80E ENSG00000169592 CDS Human protein_coding chr16:30016609 chr16:30016612 nonsynonymous SNV 0.021 0 24 hm5C_associated_SNPs_60511 0 0 1 1 30016607 30016628 mRNA hsa-miR-296-3p INO80E miRanda miRanda
5387 chr15 63363340 63363340 1 + A T LUAD 63363336 + 63363316 63363356 41 ACCTTAGTATGCATCAGATGCTGGATCAGACTTTACTGGAG ACCTTAGTATGCATCAGATGCTGGTTCAGACTTTACTGGAG < 41bp 0.817039454860504 0.549713341690598 0.2453753 0.12837178 prediction 0.534652226339813 Functional Loss - TPM1 ENSG00000140416 CDS Human protein_coding chr15:63363336 chr15:63363340 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_60512 0 0 1 2 63363334 63363356 mRNA hsa-miR-145 TPM1 miRanda miRanda
5388 chr15 63363340 63363340 1 + A T LUAD 63363336 + 63363316 63363356 41 ACCTTAGTATGCATCAGATGCTGGATCAGACTTTACTGGAG ACCTTAGTATGCATCAGATGCTGGTTCAGACTTTACTGGAG < 41bp 0.817039454860504 0.549713341690598 0.2453753 0.12837178 prediction 0.534652226339813 Functional Loss - TPM1 ENSG00000140416 CDS Human protein_coding chr15:63363336 chr15:63363340 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_60512 0 0 1 2 63363317 63363340 mRNA hsa-miR-338-3p TPM1 miRanda miRanda
5389 chr17 52991168 52991168 1 + C T LUSC 52991166 + 52991146 52991186 41 GCGAAGTCAAAGAAGTATACCTCGACCTGGTTAAGAAAGGC GCGAAGTCAAAGAAGTATACCTTGACCTGGTTAAGAAAGGC < 41bp 0.807357265460563 0.540103952635993 0.32240212 0.14735347 prediction 0.53450662564914 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52991166 chr17:52991168 synonymous SNV . 0 23 hm5C_associated_SNPs_60529 0 0 1 2 52991151 52991175 mRNA hsa-miR-125a-3p TOM1L1 miRanda miRanda
5390 chr17 52991168 52991168 1 + C T LUSC 52991166 + 52991146 52991186 41 GCGAAGTCAAAGAAGTATACCTCGACCTGGTTAAGAAAGGC GCGAAGTCAAAGAAGTATACCTTGACCTGGTTAAGAAAGGC < 41bp 0.807357265460563 0.540103952635993 0.32240212 0.14735347 prediction 0.53450662564914 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52991166 chr17:52991168 synonymous SNV . 0 23 hm5C_associated_SNPs_60529 0 0 1 2 52991150 52991169 mRNA hsa-miR-202 TOM1L1 miRanda miRanda
5391 chr4 52938224 52938224 1 + G T SARC 52938222 + 52938202 52938242 41 CACTCAAGCAGAATGCAGACCAGCAGGACACAGAAGCCATG CACTCAAGCAGAATGCAGACCATCAGGACACAGAAGCCATG < 41bp 0.767251285262323 0.422528770531429 0.2080639 0.045050085 prediction 0.534502570524645 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52938222 chr4:52938224 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_60530 0 0 0 3 52938220 52938242 mRNA hsa-miR-135a SPATA18 miRanda miRanda
5392 chr4 52938224 52938224 1 + G T SARC 52938222 + 52938202 52938242 41 CACTCAAGCAGAATGCAGACCAGCAGGACACAGAAGCCATG CACTCAAGCAGAATGCAGACCATCAGGACACAGAAGCCATG < 41bp 0.767251285262323 0.422528770531429 0.2080639 0.045050085 prediction 0.534502570524645 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52938222 chr4:52938224 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_60530 0 0 0 3 52938208 52938229 mRNA hsa-miR-370 SPATA18 miRanda miRanda
5393 chr4 52938224 52938224 1 + G T SARC 52938222 + 52938202 52938242 41 CACTCAAGCAGAATGCAGACCAGCAGGACACAGAAGCCATG CACTCAAGCAGAATGCAGACCATCAGGACACAGAAGCCATG < 41bp 0.767251285262323 0.422528770531429 0.2080639 0.045050085 prediction 0.534502570524645 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52938222 chr4:52938224 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_60530 0 0 0 3 52938220 52938242 mRNA hsa-miR-135b SPATA18 miRanda miRanda
5394 chr9 100071830 100071830 1 + G T COAD 100071828 + 100071808 100071848 41 AGGTGATGTCTCCCCGACAGCAGAAGTGGATGCACAGCCTC AGGTGATGTCTCCCCGACAGCATAAGTGGATGCACAGCCTC < 41bp 0.76705824868691 0.424270397101141 0.5141622 0.15149799 prediction 0.534116497373821 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100071828 chr9:100071830 nonsynonymous SNV 0.620 0 23 hm5C_associated_SNPs_60576 0 0 0 1 100071828 100071849 mRNA hsa-miR-485-5p KIAA1529 miRanda miRanda
5395 chr1 32557320 32557320 1 + G C LUAD 32557316 + 32557296 32557336 41 TCCTGCAGCTGAATTGCGACCTCCGCAAGACAAGCCTCTTC TCCTGCAGCTGAATTGCGACCTCCCCAAGACAAGCCTCTTC < 41bp 0.794015548521046 0.526997246666081 0.08774927 0.0386512 prediction 0.53403660370993 Functional Loss - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32557316 chr1:32557320 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_60583 0 0 1 2 32557305 32557327 mRNA hsa-miR-431 TMEM39B miRanda miRanda
5396 chr1 32557320 32557320 1 + G C LUAD 32557316 + 32557296 32557336 41 TCCTGCAGCTGAATTGCGACCTCCGCAAGACAAGCCTCTTC TCCTGCAGCTGAATTGCGACCTCCCCAAGACAAGCCTCTTC < 41bp 0.794015548521046 0.526997246666081 0.08774927 0.0386512 prediction 0.53403660370993 Functional Loss - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32557316 chr1:32557320 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_60583 0 0 1 2 32557318 32557338 mRNA hsa-miR-488 TMEM39B miRanda miRanda
5397 chr12 9997552 9997552 1 + G T rs114189338 9997549 + 9997529 9997569 41 AAGAGAATTAACTTTGTTTCCAGGCTTTTGCTACTCTTCAC AAGAGAATTAACTTTGTTTCCAGTCTTTTGCTACTCTTCAC < 41bp 0.766658971217234 0.490874736915121 0.6009702 0.33374494 prediction 0.533317942434468 Functional Loss - KLRF1 ENSG00000150045 UTR3 Human protein_coding chr12:9997549 chr12:9997552 . . 0 24 hm5C_associated_SNPs_60665 0 0 0 2 9997540 9997563 mRNA hsa-miR-19b KLRF1 miRanda miRanda
5398 chr12 9997552 9997552 1 + G T rs114189338 9997549 + 9997529 9997569 41 AAGAGAATTAACTTTGTTTCCAGGCTTTTGCTACTCTTCAC AAGAGAATTAACTTTGTTTCCAGTCTTTTGCTACTCTTCAC < 41bp 0.766658971217234 0.490874736915121 0.6009702 0.33374494 prediction 0.533317942434468 Functional Loss - KLRF1 ENSG00000150045 UTR3 Human protein_coding chr12:9997549 chr12:9997552 . . 0 24 hm5C_associated_SNPs_60665 0 0 0 2 9997539 9997564 mRNA hsa-miR-301a KLRF1 miRanda miRanda
5399 chr7 127230165 127230165 1 + G T UCEC 127230162 + 127230142 127230182 41 GTAATGACCGGGAGCGGGTCCAAGAATCTGCTGATGAACTC GTAATGACCGGGAGCGGGTCCAATAATCTGCTGATGAACTC < 41bp 0.905332410717615 0.638724798591248 0.58238965 0.24834073 prediction 0.533215224252734 Functional Loss - ARF5 ENSG00000004059 CDS Human protein_coding chr7:127230162 chr7:127230165 stopgain 0.999 1 24 hm5C_associated_SNPs_60673 0 0 1 1 127230152 127230175 mRNA hsa-miR-214 ARF5 miRanda miRanda
5400 chr9 132084840 132084840 1 + G T LUAD 132084837 + 132084817 132084857 41 TGACCTATAGGAGGCACTGCCCAGAGCTCCTAACTGGGGTG TGACCTATAGGAGGCACTGCCCATAGCTCCTAACTGGGGTG < 41bp 0.766350442331787 0.429102700218918 0.3179252 0.028190792 prediction 0.532700884663575 Functional Loss - C9orf106 ENSG00000179082 ncRNA_exonic Human lincRNA chr9:132084837 chr9:132084840 . . 0 24 hm5C_associated_SNPs_60736 0 0 0 4 132084824 132084848 mRNA hsa-miR-28-5p C9orf106 miRanda miRanda
5401 chr9 132084840 132084840 1 + G T LUAD 132084837 + 132084817 132084857 41 TGACCTATAGGAGGCACTGCCCAGAGCTCCTAACTGGGGTG TGACCTATAGGAGGCACTGCCCATAGCTCCTAACTGGGGTG < 41bp 0.766350442331787 0.429102700218918 0.3179252 0.028190792 prediction 0.532700884663575 Functional Loss - C9orf106 ENSG00000179082 ncRNA_exonic Human lincRNA chr9:132084837 chr9:132084840 . . 0 24 hm5C_associated_SNPs_60736 0 0 0 4 132084821 132084843 mRNA hsa-miR-330-5p C9orf106 miRanda miRanda
5402 chr9 132084840 132084840 1 + G T LUAD 132084837 + 132084817 132084857 41 TGACCTATAGGAGGCACTGCCCAGAGCTCCTAACTGGGGTG TGACCTATAGGAGGCACTGCCCATAGCTCCTAACTGGGGTG < 41bp 0.766350442331787 0.429102700218918 0.3179252 0.028190792 prediction 0.532700884663575 Functional Loss - C9orf106 ENSG00000179082 ncRNA_exonic Human lincRNA chr9:132084837 chr9:132084840 . . 0 24 hm5C_associated_SNPs_60736 0 0 0 4 132084824 132084843 mRNA hsa-miR-326 C9orf106 miRanda miRanda
5403 chr9 132084840 132084840 1 + G T LUAD 132084837 + 132084817 132084857 41 TGACCTATAGGAGGCACTGCCCAGAGCTCCTAACTGGGGTG TGACCTATAGGAGGCACTGCCCATAGCTCCTAACTGGGGTG < 41bp 0.766350442331787 0.429102700218918 0.3179252 0.028190792 prediction 0.532700884663575 Functional Loss - C9orf106 ENSG00000179082 ncRNA_exonic Human lincRNA chr9:132084837 chr9:132084840 . . 0 24 hm5C_associated_SNPs_60736 0 0 0 4 132084826 132084848 mRNA hsa-miR-708 C9orf106 miRanda miRanda
5404 chr8 22105999 22105999 1 + C T STAD 22105997 + 22105977 22106017 41 CAGACTCTCTTTGGCAGTTCCTCGATGACCCCGGCCTGAGG CAGACTCTCTTTGGCAGTTCCTTGATGACCCCGGCCTGAGG < 41bp 0.813485122049553 0.547813626283531 0.90209323 0.08821282 prediction 0.531342991532044 Functional Loss - POLR3D ENSG00000168495 CDS Human protein_coding chr8:22105997 chr8:22105999 stopgain . 0 23 hm5C_associated_SNPs_60886 0 0 1 1 22105994 22106000 mRNA hsa-miR-873 POLR3D miRanda miRanda
5405 chr16 29851519 29851519 1 + C T LUSC 29851517 + 29851497 29851537 41 AGGGAGAGAAGTCTTTTTTCCTCCAGCCAGGAGAGCAGCTG AGGGAGAGAAGTCTTTTTTCCTTCAGCCAGGAGAGCAGCTG < 41bp 0.765661464365738 0.472275596230591 0.92455924 0.14553452 prediction 0.531322928731476 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29851517 chr16:29851519 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_60889 0 0 1 1 29851506 29851528 mRNA hsa-miR-370 MVP miRanda miRanda
5406 chr6 44198149 44198149 1 + G C COAD 44198145 + 44198125 44198165 41 GGCCTTCTGCCTGCCAGCTACACGGCCCCCATCATGAGTGG GGCCTTCTGCCTGCCAGCTACACGCCCCCCATCATGAGTGG < 41bp 0.790067649875633 0.524492642768535 0.49962533 0.21813992 prediction 0.531150014214195 Functional Loss - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44198145 chr6:44198149 nonsynonymous SNV 0.946 3 25 hm5C_associated_SNPs_60909 0 0 1 1 44198141 44198162 mRNA hsa-miR-433 SLC29A1 miRanda miRanda
5407 chr7 141311018 141311018 1 + G T UCEC 141311015 + 141310995 141311035 41 ACAGATTATGAGGGACAAGCCAAGAAACTCCTGGAACTGAT ACAGATTATGAGGGACAAGCCAATAAACTCCTGGAACTGAT < 41bp 0.765552714003713 0.403264230758788 0.22466686 0.34435844 prediction 0.531105428007426 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141311015 chr7:141311018 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_60917 0 0 1 1 141311004 141311026 mRNA hsa-miR-876-5p AGK miRanda miRanda
5408 chr15 66840985 66840985 1 + A C rs11858742 66840981 + 66840961 66841001 41 ACGAGCACCACAAATGAGAACAGGATCATTTTAGTAAATAC ACGAGCACCACAAATGAGAACAGGCTCATTTTAGTAAATAC < 41bp 0.765496806066379 0.440116100912685 0.1422784 0.18444675 prediction 0.530993612132757 Functional Loss - ZWILCH ENSG00000174442 UTR3 Human protein_coding chr15:66840981 chr15:66840985 . . 0 25 hm5C_associated_SNPs_60930 0 0 1 1 66840984 66841006 mRNA hsa-miR-590-5p ZWILCH miRanda miRanda
5409 chrX 7065597 7065597 1 + A T rs746796643 7065593 + 7065573 7065613 41 GGTAGAGAACCGCTACCATGCAGGATGCTACCATCAAAGTG GGTAGAGAACCGCTACCATGCAGGTTGCTACCATCAAAGTG < 41bp 0.781154637417176 0.515662365937155 0.565658 0.38988787 prediction 0.530984542960042 Functional Loss - STS ENSG00000130021 intronic Human protein_coding chrX:7065593 chrX:7065597 . . 0 25 hm5C_associated_SNPs_60932 0 0 0 9 7065586 7065608 mRNA hsa-let-7a STS miRanda miRanda
5410 chrX 7065597 7065597 1 + A T rs746796643 7065593 + 7065573 7065613 41 GGTAGAGAACCGCTACCATGCAGGATGCTACCATCAAAGTG GGTAGAGAACCGCTACCATGCAGGTTGCTACCATCAAAGTG < 41bp 0.781154637417176 0.515662365937155 0.565658 0.38988787 prediction 0.530984542960042 Functional Loss - STS ENSG00000130021 intronic Human protein_coding chrX:7065593 chrX:7065597 . . 0 25 hm5C_associated_SNPs_60932 0 0 0 9 7065586 7065608 mRNA hsa-let-7b STS miRanda miRanda
5411 chrX 7065597 7065597 1 + A T rs746796643 7065593 + 7065573 7065613 41 GGTAGAGAACCGCTACCATGCAGGATGCTACCATCAAAGTG GGTAGAGAACCGCTACCATGCAGGTTGCTACCATCAAAGTG < 41bp 0.781154637417176 0.515662365937155 0.565658 0.38988787 prediction 0.530984542960042 Functional Loss - STS ENSG00000130021 intronic Human protein_coding chrX:7065593 chrX:7065597 . . 0 25 hm5C_associated_SNPs_60932 0 0 0 9 7065586 7065608 mRNA hsa-let-7c STS miRanda miRanda
5412 chrX 7065597 7065597 1 + A T rs746796643 7065593 + 7065573 7065613 41 GGTAGAGAACCGCTACCATGCAGGATGCTACCATCAAAGTG GGTAGAGAACCGCTACCATGCAGGTTGCTACCATCAAAGTG < 41bp 0.781154637417176 0.515662365937155 0.565658 0.38988787 prediction 0.530984542960042 Functional Loss - STS ENSG00000130021 intronic Human protein_coding chrX:7065593 chrX:7065597 . . 0 25 hm5C_associated_SNPs_60932 0 0 0 9 7065586 7065608 mRNA hsa-let-7d STS miRanda miRanda
5413 chrX 7065597 7065597 1 + A T rs746796643 7065593 + 7065573 7065613 41 GGTAGAGAACCGCTACCATGCAGGATGCTACCATCAAAGTG GGTAGAGAACCGCTACCATGCAGGTTGCTACCATCAAAGTG < 41bp 0.781154637417176 0.515662365937155 0.565658 0.38988787 prediction 0.530984542960042 Functional Loss - STS ENSG00000130021 intronic Human protein_coding chrX:7065593 chrX:7065597 . . 0 25 hm5C_associated_SNPs_60932 0 0 0 9 7065586 7065608 mRNA hsa-let-7e STS miRanda miRanda
5414 chrX 7065597 7065597 1 + A T rs746796643 7065593 + 7065573 7065613 41 GGTAGAGAACCGCTACCATGCAGGATGCTACCATCAAAGTG GGTAGAGAACCGCTACCATGCAGGTTGCTACCATCAAAGTG < 41bp 0.781154637417176 0.515662365937155 0.565658 0.38988787 prediction 0.530984542960042 Functional Loss - STS ENSG00000130021 intronic Human protein_coding chrX:7065593 chrX:7065597 . . 0 25 hm5C_associated_SNPs_60932 0 0 0 9 7065586 7065608 mRNA hsa-let-7f STS miRanda miRanda
5415 chrX 7065597 7065597 1 + A T rs746796643 7065593 + 7065573 7065613 41 GGTAGAGAACCGCTACCATGCAGGATGCTACCATCAAAGTG GGTAGAGAACCGCTACCATGCAGGTTGCTACCATCAAAGTG < 41bp 0.781154637417176 0.515662365937155 0.565658 0.38988787 prediction 0.530984542960042 Functional Loss - STS ENSG00000130021 intronic Human protein_coding chrX:7065593 chrX:7065597 . . 0 25 hm5C_associated_SNPs_60932 0 0 0 9 7065586 7065608 mRNA hsa-miR-98 STS miRanda miRanda
5416 chrX 7065597 7065597 1 + A T rs746796643 7065593 + 7065573 7065613 41 GGTAGAGAACCGCTACCATGCAGGATGCTACCATCAAAGTG GGTAGAGAACCGCTACCATGCAGGTTGCTACCATCAAAGTG < 41bp 0.781154637417176 0.515662365937155 0.565658 0.38988787 prediction 0.530984542960042 Functional Loss - STS ENSG00000130021 intronic Human protein_coding chrX:7065593 chrX:7065597 . . 0 25 hm5C_associated_SNPs_60932 0 0 0 9 7065586 7065608 mRNA hsa-let-7g STS miRanda miRanda
5417 chrX 7065597 7065597 1 + A T rs746796643 7065593 + 7065573 7065613 41 GGTAGAGAACCGCTACCATGCAGGATGCTACCATCAAAGTG GGTAGAGAACCGCTACCATGCAGGTTGCTACCATCAAAGTG < 41bp 0.781154637417176 0.515662365937155 0.565658 0.38988787 prediction 0.530984542960042 Functional Loss - STS ENSG00000130021 intronic Human protein_coding chrX:7065593 chrX:7065597 . . 0 25 hm5C_associated_SNPs_60932 0 0 0 9 7065587 7065608 mRNA hsa-let-7i STS miRanda miRanda
5418 chr5 94903724 94903724 1 + G T LUAD 94903722 + 94903702 94903742 41 GAACACAGAAATTTGGGAAACTGGACTATACTTCAGGACAT GAACACAGAAATTTGGGAAACTTGACTATACTTCAGGACAT < 41bp 0.835266916819239 0.569820929580554 0.84695685 0.4460369 prediction 0.530891974477371 Functional Loss - ARSK ENSG00000164291 CDS Human protein_coding chr5:94903722 chr5:94903724 synonymous SNV . 0 23 hm5C_associated_SNPs_60945 0 0 1 1 94903706 94903727 mRNA hsa-miR-145 ARSK miRanda miRanda
5419 chr19 53960882 53960882 1 + G T rs188896157 53960880 + 53960860 53960900 41 AATTGACATTAGGGTCAATTCAGCATTGACTTGAGTTTGTA AATTGACATTAGGGTCAATTCATCATTGACTTGAGTTTGTA < 41bp 0.768042970992401 0.502691824933513 0.1708211 0.04581046 prediction 0.530702292117777 Functional Loss - ZNF761;ZNF765-ZNF761 ENSG00000160336 ncRNA_exonic Human protein_coding chr19:53960880 chr19:53960882 . . 0 23 hm5C_associated_SNPs_60967 0 0 1 2 53960872 53960894 mRNA hsa-miR-26a ZNF761 miRanda miRanda
5420 chr19 53960882 53960882 1 + G T rs188896157 53960880 + 53960860 53960900 41 AATTGACATTAGGGTCAATTCAGCATTGACTTGAGTTTGTA AATTGACATTAGGGTCAATTCATCATTGACTTGAGTTTGTA < 41bp 0.768042970992401 0.502691824933513 0.1708211 0.04581046 prediction 0.530702292117777 Functional Loss - ZNF761;ZNF765-ZNF761 ENSG00000160336 ncRNA_exonic Human protein_coding chr19:53960880 chr19:53960882 . . 0 23 hm5C_associated_SNPs_60967 0 0 1 2 53960873 53960894 mRNA hsa-miR-26b ZNF761 miRanda miRanda
5421 chr14 75201644 75201644 1 + A T rs141595537 75201640 + 75201620 75201660 41 CCCCTCGATTCTAATTCTTACAAGACACAGTTCCTCTGCCT CCCCTCGATTCTAATTCTTACAAGTCACAGTTCCTCTGCCT < 41bp 0.80872934247099 0.543521586941636 0.24165282 0.13091418 prediction 0.530415511058707 Functional Loss - FCF1 ENSG00000119616 UTR3 Human protein_coding chr14:75201640 chr14:75201644 . . 0 25 hm5C_associated_SNPs_60999 0 0 1 1 75201626 75201646 mRNA hsa-miR-431 FCF1 miRanda miRanda
5422 chr8 8086110 8086110 1 + G T rs115776386 8086108 + 8086088 8086128 41 CGCCCGATCTCCTGGCAACGCTGCGGCCCCGCCCACATCAT CGCCCGATCTCCTGGCAACGCTTCGGCCCCGCCCACATCAT < 41bp 0.765107557281434 0.434606864962307 0.10512501 0.025637388 prediction 0.530215114562869 Functional Loss - FAM86B3P ENSG00000173295 upstream Human transcribed_unprocessed_pseudogene chr8:8086108 chr8:8086110 . . 0 23 hm5C_associated_SNPs_61015 0 0 0 1 8086105 8086126 mRNA hsa-miR-299-3p FLJ10661 miRanda miRanda
5423 chr10 1151180 1151180 1 + C T UCEC 1151178 + 1151158 1151198 41 TTCAGGGACCCCTCCATCCACTCGGTGAATGTTTTCCAGGG TTCAGGGACCCCTCCATCCACTTGGTGAATGTTTTCCAGGG < 41bp 0.771066467201362 0.506055721952472 0.54700655 0.6125531 prediction 0.530021490497779 Functional Loss - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1151178 chr10:1151180 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_61034 0 0 1 1 1151168 1151191 mRNA hsa-miR-543 WDR37 miRanda miRanda
5424 chr1 95311020 95311020 1 + G T LUAD 95311018 + 95310998 95311038 41 GCTGCTGAGCCTGGGAACTGCAGGTAAGGGACAGTGGGTGT GCTGCTGAGCCTGGGAACTGCATGTAAGGGACAGTGGGTGT < 41bp 0.764795126688144 0.436889213923214 0.7029186 0.20595726 prediction 0.529590253376287 Functional Loss - SLC44A3 ENSG00000143036 CDS Human protein_coding chr1:95311018 chr1:95311020 stopgain 0.985 1 23 hm5C_associated_SNPs_61078 0 0 0 1 95311015 95311020 mRNA hsa-miR-490-3p SLC44A3 miRanda miRanda
5425 chr1 214488167 214488167 1 + G T LUAD 214488164 + 214488144 214488184 41 ATGGTTGTTTTTGGGGAAAACTGGAATCCCTCGGAGACTGT ATGGTTGTTTTTGGGGAAAACTGTAATCCCTCGGAGACTGT < 41bp 0.89292220618776 0.628256722760544 0.89185834 0.3256753 prediction 0.529330966854433 Functional Loss - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214488164 chr1:214488167 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61104 0 0 1 1 214488147 214488169 mRNA hsa-miR-145 SMYD2 miRanda miRanda
5426 chr1 222923745 222923745 1 + A C rs535597605 222923741 + 222923721 222923761 41 TTGGGACTGGGAGTTTTTGGCTGAAATCCTCTGTCATGGGA TTGGGACTGGGAGTTTTTGGCTGACATCCTCTGTCATGGGA < 41bp 0.764603931432477 0.411699423140956 0.3229765 0.3883631 prediction 0.529207862864954 Functional Loss - FAM177B ENSG00000197520 UTR3 Human protein_coding chr1:222923741 chr1:222923745 . . 0 25 hm5C_associated_SNPs_61126 0 0 0 1 222923729 222923750 mRNA hsa-miR-876-5p FAM177B miRanda miRanda
5427 chr1 214503600 214503600 1 + G T GBM 214503598 + 214503578 214503618 41 ATTTCTTTACCTGTGAGTGCCAGGAGTGTACCACCAAGGAC ATTTCTTTACCTGTGAGTGCCATGAGTGTACCACCAAGGAC < 41bp 0.856545185264365 0.592150701410627 0.89650965 0.38922572 prediction 0.528788967707476 Functional Loss - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503598 chr1:214503600 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_61172 0 0 1 1 214503577 214503601 mRNA hsa-miR-422a SMYD2 miRanda miRanda
5428 chr3 119236139 119236139 1 + C T SKCM 119236137 + 119236117 119236157 41 AACAGAAGGATCGAAAGGCACTCCATGAGCTAAAACTGGAA AACAGAAGGATCGAAAGGCACTTCATGAGCTAAAACTGGAA < 41bp 0.81717532871816 0.552783424086008 0.9250574 0.12436974 prediction 0.528783809264304 Functional Loss - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119236137 chr3:119236139 synonymous SNV . 0 23 hm5C_associated_SNPs_61173 0 0 1 1 119236132 119236157 mRNA hsa-miR-145 C3orf1 miRanda miRanda
5429 chr19 53086946 53086946 1 + G T rs190191374 53086943 + 53086923 53086963 41 CCAACATACTGGAATTCACACTGGAAAGGAACTGTACAAGT CCAACATACTGGAATTCACACTGTAAAGGAACTGTACAAGT < 41bp 0.764349060959066 0.396824357512328 0.319099 0.12969378 prediction 0.528698121918133 Functional Loss - ZNF701 ENSG00000268886 ncRNA_intronic Human antisense chr19:53086943 chr19:53086946 . . 0 24 hm5C_associated_SNPs_61184 0 0 1 2 53086928 53086947 mRNA hsa-miR-199a-5p ZNF701 miRanda miRanda
5430 chr19 53086946 53086946 1 + G T rs190191374 53086943 + 53086923 53086963 41 CCAACATACTGGAATTCACACTGGAAAGGAACTGTACAAGT CCAACATACTGGAATTCACACTGTAAAGGAACTGTACAAGT < 41bp 0.764349060959066 0.396824357512328 0.319099 0.12969378 prediction 0.528698121918133 Functional Loss - ZNF701 ENSG00000268886 ncRNA_intronic Human antisense chr19:53086943 chr19:53086946 . . 0 24 hm5C_associated_SNPs_61184 0 0 1 2 53086924 53086947 mRNA hsa-miR-199b-5p ZNF701 miRanda miRanda
5431 chr3 138123744 138123744 1 + G T rs543495655 138123741 + 138123721 138123761 41 CTCATGTTCCCGTTGGTCTTCCGGAGAATAGTGCTACCCTC CTCATGTTCCCGTTGGTCTTCCGTAGAATAGTGCTACCCTC < 41bp 0.764190693780315 0.443091558663436 0.8875433 0.24466026 prediction 0.528381387560631 Functional Loss - MRAS ENSG00000158186 UTR3 Human protein_coding chr3:138123741 chr3:138123744 . . 0 24 hm5C_associated_SNPs_61216 0 0 0 1 138123740 138123762 mRNA hsa-let-7i MRAS miRanda miRanda
5432 chr21 39528417 39528417 1 + A T rs539680301 39528413 + 39528393 39528433 41 TTCAGACAAACCTTGGAAATCAAGAAAGTTCTGGAATGATG TTCAGACAAACCTTGGAAATCAAGTAAGTTCTGGAATGATG < 41bp 0.796388264778151 0.532363234267767 0.27482706 0.35120046 prediction 0.528050061020769 Functional Loss - DSCR8 ENSG00000198054 CDS Human protein_coding chr21:39528413 chr21:39528417 nonsynonymous SNV 0.746 1 25 hm5C_associated_SNPs_61247 0 0 1 2 39528415 39528435 mRNA hsa-miR-23a DSCR8 miRanda miRanda
5433 chr21 39528417 39528417 1 + A T rs539680301 39528413 + 39528393 39528433 41 TTCAGACAAACCTTGGAAATCAAGAAAGTTCTGGAATGATG TTCAGACAAACCTTGGAAATCAAGTAAGTTCTGGAATGATG < 41bp 0.796388264778151 0.532363234267767 0.27482706 0.35120046 prediction 0.528050061020769 Functional Loss - DSCR8 ENSG00000198054 CDS Human protein_coding chr21:39528413 chr21:39528417 nonsynonymous SNV 0.746 1 25 hm5C_associated_SNPs_61247 0 0 1 2 39528415 39528435 mRNA hsa-miR-23b DSCR8 miRanda miRanda
5434 chr1 33585663 33585663 1 + G T LUSC 33585661 + 33585641 33585681 41 CTAGGGAAGCGCTGCGAAGGCAGCTGATGGCTGCAGAACAG CTAGGGAAGCGCTGCGAAGGCATCTGATGGCTGCAGAACAG < 41bp 0.779151884252387 0.515211310592341 0.33280498 0.12153563 prediction 0.527881147320093 Functional Loss - AZIN2 ENSG00000142920 CDS Human protein_coding chr1:33585661 chr1:33585663 nonsynonymous SNV 0.982 2 23 hm5C_associated_SNPs_61261 0 0 0 1 33585646 33585666 mRNA hsa-miR-22 ADC miRanda miRanda
5435 chr3 169802841 169802841 1 + A T rs79112906 169802837 + 169802817 169802857 41 TTTTATGAACAGAAAGAACTCAGGACATATTAAAAAATAAA TTTTATGAACAGAAAGAACTCAGGTCATATTAAAAAATAAA < 41bp 0.763921650548546 0.486974926025943 0.09785813 0.035719007 prediction 0.527843301097092 Functional Loss - GPR160 ENSG00000173890 UTR3 Human protein_coding chr3:169802837 chr3:169802841 . . 0 25 hm5C_associated_SNPs_61269 0 0 1 4 169802821 169802842 mRNA hsa-miR-125b GPR160 miRanda miRanda
5436 chr3 169802841 169802841 1 + A T rs79112906 169802837 + 169802817 169802857 41 TTTTATGAACAGAAAGAACTCAGGACATATTAAAAAATAAA TTTTATGAACAGAAAGAACTCAGGTCATATTAAAAAATAAA < 41bp 0.763921650548546 0.486974926025943 0.09785813 0.035719007 prediction 0.527843301097092 Functional Loss - GPR160 ENSG00000173890 UTR3 Human protein_coding chr3:169802837 chr3:169802841 . . 0 25 hm5C_associated_SNPs_61269 0 0 1 4 169802823 169802842 mRNA hsa-miR-125a-5p GPR160 miRanda miRanda
5437 chr3 169802841 169802841 1 + A T rs79112906 169802837 + 169802817 169802857 41 TTTTATGAACAGAAAGAACTCAGGACATATTAAAAAATAAA TTTTATGAACAGAAAGAACTCAGGTCATATTAAAAAATAAA < 41bp 0.763921650548546 0.486974926025943 0.09785813 0.035719007 prediction 0.527843301097092 Functional Loss - GPR160 ENSG00000173890 UTR3 Human protein_coding chr3:169802837 chr3:169802841 . . 0 25 hm5C_associated_SNPs_61269 0 0 1 4 169802826 169802848 mRNA hsa-miR-190 GPR160 miRanda miRanda
5438 chr3 169802841 169802841 1 + A T rs79112906 169802837 + 169802817 169802857 41 TTTTATGAACAGAAAGAACTCAGGACATATTAAAAAATAAA TTTTATGAACAGAAAGAACTCAGGTCATATTAAAAAATAAA < 41bp 0.763921650548546 0.486974926025943 0.09785813 0.035719007 prediction 0.527843301097092 Functional Loss - GPR160 ENSG00000173890 UTR3 Human protein_coding chr3:169802837 chr3:169802841 . . 0 25 hm5C_associated_SNPs_61269 0 0 1 4 169802827 169802848 mRNA hsa-miR-190b GPR160 miRanda miRanda
5439 chr3 44609898 44609898 1 + G T UCEC 44609896 + 44609876 44609916 41 CCTGCAGTGGAACATGATGCCAGAAAATCACCATAGCATGG CCTGCAGTGGAACATGATGCCATAAAATCACCATAGCATGG < 41bp 0.763908585290214 0.426172922831719 0.32907546 0.27177793 prediction 0.527817170580429 Functional Loss - ZKSCAN7 ENSG00000196345;ENSG00000273303 CDS Human other chr3:44609896 chr3:44609898 stopgain 0.000 0 23 hm5C_associated_SNPs_61274 0 0 0 1 44609878 44609899 mRNA hsa-miR-149 ZNF167 miRanda miRanda
5440 chr8 36766936 36766936 1 + G T LUAD 36766933 + 36766913 36766953 41 CTTCGGAACTTTGTAATGCCCTTGAGAGCCAGCAACTATAC CTTCGGAACTTTGTAATGCCCTTTAGAGCCAGCAACTATAC < 41bp 0.76390752891524 0.384072572718353 0.03299448 0.044128478 prediction 0.527815057830481 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36766933 chr8:36766936 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_61276 0 0 0 1 36766921 36766945 mRNA hsa-miR-149 KCNU1 miRanda miRanda
5441 chr5 131649388 131649388 1 + G T SARC 131649385 + 131649365 131649405 41 CTGCAGATTTTCTCCATCAGCTGGGAGATGTTCACTGTGTT CTGCAGATTTTCTCCATCAGCTGTGAGATGTTCACTGTGTT < 41bp 0.763842339120693 0.361207664776888 0.71073455 0.21662483 prediction 0.527684678241385 Functional Loss - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131649385 chr5:131649388 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_61291 0 0 0 1 131649386 131649404 mRNA hsa-miR-128 SLC22A4 miRanda miRanda
5442 chr6 31525956 31525956 1 + G T UCEC 31525954 + 31525934 31525974 41 GCTCCAGCCAGAGCTGGCGACAGCAGGAGGAGGAGCAGCGG GCTCCAGCCAGAGCTGGCGACATCAGGAGGAGGAGCAGCGG < 41bp 0.763662236298739 0.487781949345452 0.84136575 0.7258026 prediction 0.527324472597478 Functional Loss - NFKBIL1 ENSG00000204498 CDS Human protein_coding chr6:31525954 chr6:31525956 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_61331 0 0 1 1 31525940 31525961 mRNA hsa-miR-370 NFKBIL1 miRanda miRanda
5443 chr17 53014508 53014508 1 + C T UCEC 53014506 + 53014486 53014526 41 CTGCCCCATCTCAAGATCTCCTCGACCTAAGTCCCAGTCCC CTGCCCCATCTCAAGATCTCCTTGACCTAAGTCCCAGTCCC < 41bp 0.764976243931925 0.501383965274766 0.4739076 0.1441167 prediction 0.527184557314318 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014506 chr17:53014508 synonymous SNV . 0 23 hm5C_associated_SNPs_61351 0 0 1 2 53014502 53014523 mRNA hsa-miR-378 TOM1L1 miRanda miRanda
5444 chr17 53014508 53014508 1 + C T UCEC 53014506 + 53014486 53014526 41 CTGCCCCATCTCAAGATCTCCTCGACCTAAGTCCCAGTCCC CTGCCCCATCTCAAGATCTCCTTGACCTAAGTCCCAGTCCC < 41bp 0.764976243931925 0.501383965274766 0.4739076 0.1441167 prediction 0.527184557314318 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014506 chr17:53014508 synonymous SNV . 0 23 hm5C_associated_SNPs_61351 0 0 1 2 53014501 53014523 mRNA hsa-miR-422a TOM1L1 miRanda miRanda
5445 chrX 107381089 107381089 1 + C T UCEC 107381087 + 107381067 107381107 41 ACACAGCTGGTGACAGGCCTCCCGATTCTTTAACTGCTTCA ACACAGCTGGTGACAGGCCTCCTGATTCTTTAACTGCTTCA < 41bp 0.788482107486169 0.524966266075633 0.32798004 0.28625304 prediction 0.527031682821072 Functional Loss - ATG4A ENSG00000101844 CDS Human protein_coding chrX:107381087 chrX:107381089 synonymous SNV . 0 23 hm5C_associated_SNPs_61367 0 0 1 1 107381077 107381098 mRNA hsa-miR-186 ATG4A miRanda miRanda
5446 chr6 50712840 50712840 1 + C T GBM 50712838 + 50712818 50712858 41 AGGGGAGGCTTTGCACTTGGCTCGGGATTTTGGCTACACTT AGGGGAGGCTTTGCACTTGGCTTGGGATTTTGGCTACACTT < 41bp 0.764056244938032 0.500706921587422 0.09564692 0.17709413 prediction 0.526698646701218 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50712838 chr6:50712840 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_61413 0 0 0 3 50712840 50712863 mRNA hsa-miR-27a TFAP2D miRanda miRanda
5447 chr6 50712840 50712840 1 + C T GBM 50712838 + 50712818 50712858 41 AGGGGAGGCTTTGCACTTGGCTCGGGATTTTGGCTACACTT AGGGGAGGCTTTGCACTTGGCTTGGGATTTTGGCTACACTT < 41bp 0.764056244938032 0.500706921587422 0.09564692 0.17709413 prediction 0.526698646701218 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50712838 chr6:50712840 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_61413 0 0 0 3 50712840 50712863 mRNA hsa-miR-27b TFAP2D miRanda miRanda
5448 chr6 50712840 50712840 1 + C T GBM 50712838 + 50712818 50712858 41 AGGGGAGGCTTTGCACTTGGCTCGGGATTTTGGCTACACTT AGGGGAGGCTTTGCACTTGGCTTGGGATTTTGGCTACACTT < 41bp 0.764056244938032 0.500706921587422 0.09564692 0.17709413 prediction 0.526698646701218 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50712838 chr6:50712840 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_61413 0 0 0 3 50712820 50712843 mRNA hsa-miR-615-3p TFAP2D miRanda miRanda
5449 chr19 49459574 49459574 1 + G T LUAD 49459572 + 49459552 49459592 41 GTCGCCCTTTTCTACTTTGCCAGCAAACTGGTGCTCAAGGT GTCGCCCTTTTCTACTTTGCCATCAAACTGGTGCTCAAGGT < 41bp 0.763325269544736 0.436643694307065 0.34972203 0.16279513 prediction 0.526650539089472 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49459572 chr19:49459574 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_61420 0 0 1 3 49459565 49459587 mRNA hsa-miR-29a BAX miRanda miRanda
5450 chr19 49459574 49459574 1 + G T LUAD 49459572 + 49459552 49459592 41 GTCGCCCTTTTCTACTTTGCCAGCAAACTGGTGCTCAAGGT GTCGCCCTTTTCTACTTTGCCATCAAACTGGTGCTCAAGGT < 41bp 0.763325269544736 0.436643694307065 0.34972203 0.16279513 prediction 0.526650539089472 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49459572 chr19:49459574 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_61420 0 0 1 3 49459564 49459587 mRNA hsa-miR-29b BAX miRanda miRanda
5451 chr19 49459574 49459574 1 + G T LUAD 49459572 + 49459552 49459592 41 GTCGCCCTTTTCTACTTTGCCAGCAAACTGGTGCTCAAGGT GTCGCCCTTTTCTACTTTGCCATCAAACTGGTGCTCAAGGT < 41bp 0.763325269544736 0.436643694307065 0.34972203 0.16279513 prediction 0.526650539089472 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49459572 chr19:49459574 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_61420 0 0 1 3 49459565 49459587 mRNA hsa-miR-29c BAX miRanda miRanda
5452 chr9 108397407 108397407 1 + C T STAD 108397405 + 108397385 108397425 41 TCCATGTACCCTGTGAAACCCTCGAATACATTGAAGCCAAC TCCATGTACCCTGTGAAACCCTTGAATACATTGAAGCCAAC < 41bp 0.793529805072636 0.530306392981747 0.9397265 0.16897115 prediction 0.526446824181778 Functional Loss - FKTN ENSG00000106692 CDS Human protein_coding chr9:108397405 chr9:108397407 synonymous SNV . 0 23 hm5C_associated_SNPs_61443 1 0 1 2 108397397 108397419 mRNA hsa-miR-26a FKTN miRanda miRanda
5453 chr9 108397407 108397407 1 + C T STAD 108397405 + 108397385 108397425 41 TCCATGTACCCTGTGAAACCCTCGAATACATTGAAGCCAAC TCCATGTACCCTGTGAAACCCTTGAATACATTGAAGCCAAC < 41bp 0.793529805072636 0.530306392981747 0.9397265 0.16897115 prediction 0.526446824181778 Functional Loss - FKTN ENSG00000106692 CDS Human protein_coding chr9:108397405 chr9:108397407 synonymous SNV . 0 23 hm5C_associated_SNPs_61443 1 0 1 2 108397398 108397419 mRNA hsa-miR-26b FKTN miRanda miRanda
5454 chr1 211451575 211451575 1 + G T LUAD 211451573 + 211451553 211451593 41 AACTAGCTAATAGACATAATCAGGGTGACAGGTAGGTTGGT AACTAGCTAATAGACATAATCATGGTGACAGGTAGGTTGGT < 41bp 0.762821896037553 0.431724485796824 0.95832926 0.91711533 prediction 0.525643792075106 Functional Loss - RCOR3 ENSG00000117625 CDS Human protein_coding chr1:211451573 chr1:211451575 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_61545 0 0 1 1 211451572 211451583 mRNA hsa-miR-181b RCOR3 miRanda miRanda
5455 chr2 228786166 228786166 1 + A C UCEC 228786162 + 228786142 228786182 41 CTTCTAACTGGCAGCTCTGACAAAACGGCTAGAATCTGGGA CTTCTAACTGGCAGCTCTGACAAACCGGCTAGAATCTGGGA < 41bp 0.762354047719052 0.356881727509173 0.38159293 0.54167616 prediction 0.524708095438104 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228786162 chr2:228786166 nonsynonymous SNV 0.891 4 25 hm5C_associated_SNPs_61654 0 0 0 1 228786164 228786186 mRNA hsa-miR-324-5p WDR69 miRanda miRanda
5456 chr12 100926246 100926246 1 + G T LUSC 100926243 + 100926223 100926263 41 GTTTCTCCCACAGGTTTCTTCAGGAGAAGCATTACCAAAAA GTTTCTCCCACAGGTTTCTTCAGTAGAAGCATTACCAAAAA < 41bp 0.899543812195077 0.637435024836991 0.5650809 0.08227819 prediction 0.524217574716172 Functional Loss - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100926243 chr12:100926246 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_61714 0 0 0 1 100926236 100926257 mRNA hsa-miR-155 NR1H4 miRanda miRanda
5457 chr4 148453732 148453732 1 + C T SKCM 148453730 + 148453710 148453750 41 GTAACTGCCATTGAAATTGTCTCCATCTGGATCCTGTCCTT GTAACTGCCATTGAAATTGTCTTCATCTGGATCCTGTCCTT < 41bp 0.761937719249644 0.456507518292923 0.95009315 0.1644594 prediction 0.523875438499289 Functional Loss - EDNRA ENSG00000151617 CDS Human protein_coding chr4:148453730 chr4:148453732 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_61762 0 0 0 1 148453724 148453743 mRNA hsa-miR-383 EDNRA miRanda miRanda
5458 chr9 72785543 72785543 1 + G C STAD 72785539 + 72785519 72785559 41 ACCAAAGGGAGATCACACTACTGGGGTAGGTGAGTTATGCC ACCAAAGGGAGATCACACTACTGGCGTAGGTGAGTTATGCC < 41bp 0.804443765593356 0.542648859590939 0.4304187 0.22167358 prediction 0.523589812004835 Functional Loss - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72785539 chr9:72785543 synonymous SNV . 0 25 hm5C_associated_SNPs_61790 0 0 0 1 72785520 72785543 mRNA hsa-miR-199b-5p MAMDC2 miRanda miRanda
5459 chr17 55078352 55078352 1 + G T UCEC 55078349 + 55078329 55078369 41 CTGGATCTCATCGTAGATACCATGGGTAGGAATTGACTCTG CTGGATCTCATCGTAGATACCATTGGTAGGAATTGACTCTG < 41bp 0.761653933724926 0.376850080249598 0.66590226 0.17312571 prediction 0.523307867449853 Functional Loss - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55078349 chr17:55078352 nonsynonymous SNV 0.979 1 24 hm5C_associated_SNPs_61821 0 0 1 1 55078335 55078353 mRNA hsa-miR-504 SCPEP1 miRanda miRanda
5460 chr17 1946027 1946027 1 + G T UCEC 1946024 + 1946004 1946044 41 AATCACTGGGGATGGTGGCACAGGCACTGAACAGGCTGGGG AATCACTGGGGATGGTGGCACAGTCACTGAACAGGCTGGGG < 41bp 0.761393201955064 0.363364683826757 0.8080876 0.6967389 prediction 0.522786403910128 Functional Loss - OVCA2 ENSG00000262664 CDS Human protein_coding chr17:1946024 chr17:1946027 nonsynonymous SNV 0.496 2 24 hm5C_associated_SNPs_61883 0 0 1 1 1946021 1946043 mRNA hsa-miR-199a-5p DPH1 miRanda miRanda
5461 chr16 71571971 71571971 1 + G T rs145349950 71571968 + 71571948 71571988 41 AGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCTTCTT AGCACATCCCACCAGTGAAACAGTGTATTGCTCTTCTTCTT < 41bp 0.761383032773693 0.461712246375317 0.9245441 0.37717676 prediction 0.522766065547385 Functional Loss - CHST4 ENSG00000140835 UTR3 Human protein_coding chr16:71571968 chr16:71571971 . . 0 24 hm5C_associated_SNPs_61886 0 0 0 2 71571952 71571974 mRNA hsa-miR-10a CHST4 miRanda miRanda
5462 chr16 71571971 71571971 1 + G T rs145349950 71571968 + 71571948 71571988 41 AGCACATCCCACCAGTGAAACAGGGTATTGCTCTTCTTCTT AGCACATCCCACCAGTGAAACAGTGTATTGCTCTTCTTCTT < 41bp 0.761383032773693 0.461712246375317 0.9245441 0.37717676 prediction 0.522766065547385 Functional Loss - CHST4 ENSG00000140835 UTR3 Human protein_coding chr16:71571968 chr16:71571971 . . 0 24 hm5C_associated_SNPs_61886 0 0 0 2 71571952 71571974 mRNA hsa-miR-10b CHST4 miRanda miRanda
5463 chr16 87678398 87678398 1 + C T GBM 87678396 + 87678376 87678416 41 GGCTTCGGCGTGAGCCAGCGCTCGGACGGGCTCAAGTACGA GGCTTCGGCGTGAGCCAGCGCTTGGACGGGCTCAAGTACGA < 41bp 0.767232095570164 0.506158913049292 0.7372927 0.66811746 prediction 0.522146365041744 Functional Loss - JPH3 ENSG00000154118 CDS Human protein_coding chr16:87678396 chr16:87678398 nonsynonymous SNV 0.982 4 23 hm5C_associated_SNPs_61977 0 0 1 1 87678379 87678401 mRNA hsa-miR-615-3p JPH3 miRanda miRanda
5464 chr20 31894731 31894731 1 + G T LUSC 31894729 + 31894709 31894749 41 TATTTCAGGCAAATTAAGATCTGGGGTCCCAGTGTCATTGG TATTTCAGGCAAATTAAGATCTTGGGTCCCAGTGTCATTGG < 41bp 0.875756270694013 0.614781111185793 0.48295075 0.07340649 prediction 0.52195031901644 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31894729 chr20:31894731 nonsynonymous SNV 0.009 4 23 hm5C_associated_SNPs_62011 0 0 0 1 31894725 31894747 mRNA hsa-miR-425 C20orf114 miRanda miRanda
5465 chr2 29072759 29072759 1 - C A UCEC 29072762 - 29072742 29072782 41 TCCATAGATTTGTCTTTCTTCAAGAAATTAGTTTTCTTTCC TCCATAGATTTGTCTTTCTTCAATAAATTAGTTTTCTTTCC < 41bp 0.843841079463587 0.582899282686261 0.35148144 0.24750555 prediction 0.521883593554652 Functional Loss - SPDYA ENSG00000163806 CDS Human protein_coding chr2:29072762 chr2:29072759 nonsynonymous SNV 0.967 0 24 hm5C_associated_SNPs_62030 0 0 1 2 29072741 29072762 mRNA hsa-miR-185 TRMT61B miRanda miRanda
5466 chr2 29072759 29072759 1 - C A UCEC 29072762 - 29072742 29072782 41 TCCATAGATTTGTCTTTCTTCAAGAAATTAGTTTTCTTTCC TCCATAGATTTGTCTTTCTTCAATAAATTAGTTTTCTTTCC < 41bp 0.843841079463587 0.582899282686261 0.35148144 0.24750555 prediction 0.521883593554652 Functional Loss - SPDYA ENSG00000163806 CDS Human protein_coding chr2:29072762 chr2:29072759 nonsynonymous SNV 0.967 0 24 hm5C_associated_SNPs_62030 0 0 1 2 29072743 29072764 mRNA hsa-miR-186 TRMT61B miRanda miRanda
5467 chr12 109972570 109972570 1 + G T HNSC 109972568 + 109972548 109972588 41 CTACGCCATCAGCATGAACACGGGCTTTGAACTCTCCTAGC CTACGCCATCAGCATGAACACGTGCTTTGAACTCTCCTAGC < 41bp 0.760938317159145 0.442150670957292 0.89627177 0.35689992 prediction 0.521876634318291 Functional Loss - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109972568 chr12:109972570 nonsynonymous SNV 0.987 4 23 hm5C_associated_SNPs_62034 0 0 0 1 109972570 109972593 mRNA hsa-miR-28-5p UBE3B miRanda miRanda
5468 chr1 161198097 161198097 1 + G C rs61731576 161198096 + 161198076 161198116 41 GACACTGGCTGGGAAGTACTCGGGTATGGGGCGAAGTGAAG GACACTGGCTGGGAAGTACTCCGGTATGGGGCGAAGTGAAG < 41bp 0.839538293608539 0.578750463316703 0.8826611 0.3126312 prediction 0.521575660583672 Functional Loss - TOMM40L ENSG00000158882 CDS Human protein_coding chr1:161198096 chr1:161198097 synonymous SNV . 0 22 hm5C_associated_SNPs_62069 0 0 1 2 161198088 161198098 mRNA hsa-miR-199a-5p TOMM40L miRanda miRanda
5469 chr1 161198097 161198097 1 + G C rs61731576 161198096 + 161198076 161198116 41 GACACTGGCTGGGAAGTACTCGGGTATGGGGCGAAGTGAAG GACACTGGCTGGGAAGTACTCCGGTATGGGGCGAAGTGAAG < 41bp 0.839538293608539 0.578750463316703 0.8826611 0.3126312 prediction 0.521575660583672 Functional Loss - TOMM40L ENSG00000158882 CDS Human protein_coding chr1:161198096 chr1:161198097 synonymous SNV . 0 22 hm5C_associated_SNPs_62069 0 0 1 2 161198088 161198098 mRNA hsa-miR-199b-5p TOMM40L miRanda miRanda
5470 chr20 33514942 33514942 1 + C T UCEC 33514940 + 33514920 33514960 41 TTGCTCAGAATGACCATGACCTCGGGGACATGTCTACTGTG TTGCTCAGAATGACCATGACCTTGGGGACATGTCTACTGTG < 41bp 0.760718739160513 0.48932121072988 0.10824004 0.1423442 prediction 0.521437478321026 Functional Loss - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33514940 chr20:33514942 synonymous SNV . 0 23 hm5C_associated_SNPs_62089 0 0 1 1 33514938 33514958 mRNA hsa-miR-411 ACSS2 miRanda miRanda
5471 chr3 157271104 157271104 1 + G T STAD 157271102 + 157271082 157271122 41 AAACTCAAGCACTGATACGTCCGGAGAGCACTTGACCTGCC AAACTCAAGCACTGATACGTCCTGAGAGCACTTGACCTGCC < 41bp 0.857613365703964 0.597008522848373 0.13627401 0.07459262 prediction 0.521209685711183 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271102 chr3:157271104 stopgain 0.000 0 23 hm5C_associated_SNPs_62116 0 0 0 12 157271090 157271115 mRNA hsa-miR-302a C3orf55 miRanda miRanda
5472 chr3 157271104 157271104 1 + G T STAD 157271102 + 157271082 157271122 41 AAACTCAAGCACTGATACGTCCGGAGAGCACTTGACCTGCC AAACTCAAGCACTGATACGTCCTGAGAGCACTTGACCTGCC < 41bp 0.857613365703964 0.597008522848373 0.13627401 0.07459262 prediction 0.521209685711183 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271102 chr3:157271104 stopgain 0.000 0 23 hm5C_associated_SNPs_62116 0 0 0 12 157271090 157271115 mRNA hsa-miR-302b C3orf55 miRanda miRanda
5473 chr3 157271104 157271104 1 + G T STAD 157271102 + 157271082 157271122 41 AAACTCAAGCACTGATACGTCCGGAGAGCACTTGACCTGCC AAACTCAAGCACTGATACGTCCTGAGAGCACTTGACCTGCC < 41bp 0.857613365703964 0.597008522848373 0.13627401 0.07459262 prediction 0.521209685711183 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271102 chr3:157271104 stopgain 0.000 0 23 hm5C_associated_SNPs_62116 0 0 0 12 157271090 157271115 mRNA hsa-miR-302c C3orf55 miRanda miRanda
5474 chr3 157271104 157271104 1 + G T STAD 157271102 + 157271082 157271122 41 AAACTCAAGCACTGATACGTCCGGAGAGCACTTGACCTGCC AAACTCAAGCACTGATACGTCCTGAGAGCACTTGACCTGCC < 41bp 0.857613365703964 0.597008522848373 0.13627401 0.07459262 prediction 0.521209685711183 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271102 chr3:157271104 stopgain 0.000 0 23 hm5C_associated_SNPs_62116 0 0 0 12 157271090 157271115 mRNA hsa-miR-302d C3orf55 miRanda miRanda
5475 chr3 157271104 157271104 1 + G T STAD 157271102 + 157271082 157271122 41 AAACTCAAGCACTGATACGTCCGGAGAGCACTTGACCTGCC AAACTCAAGCACTGATACGTCCTGAGAGCACTTGACCTGCC < 41bp 0.857613365703964 0.597008522848373 0.13627401 0.07459262 prediction 0.521209685711183 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271102 chr3:157271104 stopgain 0.000 0 23 hm5C_associated_SNPs_62116 0 0 0 12 157271090 157271115 mRNA hsa-miR-372 C3orf55 miRanda miRanda
5476 chr3 157271104 157271104 1 + G T STAD 157271102 + 157271082 157271122 41 AAACTCAAGCACTGATACGTCCGGAGAGCACTTGACCTGCC AAACTCAAGCACTGATACGTCCTGAGAGCACTTGACCTGCC < 41bp 0.857613365703964 0.597008522848373 0.13627401 0.07459262 prediction 0.521209685711183 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271102 chr3:157271104 stopgain 0.000 0 23 hm5C_associated_SNPs_62116 0 0 0 12 157271090 157271115 mRNA hsa-miR-373 C3orf55 miRanda miRanda
5477 chr3 157271104 157271104 1 + G T STAD 157271102 + 157271082 157271122 41 AAACTCAAGCACTGATACGTCCGGAGAGCACTTGACCTGCC AAACTCAAGCACTGATACGTCCTGAGAGCACTTGACCTGCC < 41bp 0.857613365703964 0.597008522848373 0.13627401 0.07459262 prediction 0.521209685711183 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271102 chr3:157271104 stopgain 0.000 0 23 hm5C_associated_SNPs_62116 0 0 0 12 157271094 157271115 mRNA hsa-miR-520e C3orf55 miRanda miRanda
5478 chr3 157271104 157271104 1 + G T STAD 157271102 + 157271082 157271122 41 AAACTCAAGCACTGATACGTCCGGAGAGCACTTGACCTGCC AAACTCAAGCACTGATACGTCCTGAGAGCACTTGACCTGCC < 41bp 0.857613365703964 0.597008522848373 0.13627401 0.07459262 prediction 0.521209685711183 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271102 chr3:157271104 stopgain 0.000 0 23 hm5C_associated_SNPs_62116 0 0 0 12 157271097 157271115 mRNA hsa-miR-520a-3p C3orf55 miRanda miRanda
5479 chr3 157271104 157271104 1 + G T STAD 157271102 + 157271082 157271122 41 AAACTCAAGCACTGATACGTCCGGAGAGCACTTGACCTGCC AAACTCAAGCACTGATACGTCCTGAGAGCACTTGACCTGCC < 41bp 0.857613365703964 0.597008522848373 0.13627401 0.07459262 prediction 0.521209685711183 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271102 chr3:157271104 stopgain 0.000 0 23 hm5C_associated_SNPs_62116 0 0 0 12 157271094 157271115 mRNA hsa-miR-520b C3orf55 miRanda miRanda
5480 chr3 157271104 157271104 1 + G T STAD 157271102 + 157271082 157271122 41 AAACTCAAGCACTGATACGTCCGGAGAGCACTTGACCTGCC AAACTCAAGCACTGATACGTCCTGAGAGCACTTGACCTGCC < 41bp 0.857613365703964 0.597008522848373 0.13627401 0.07459262 prediction 0.521209685711183 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271102 chr3:157271104 stopgain 0.000 0 23 hm5C_associated_SNPs_62116 0 0 0 12 157271093 157271115 mRNA hsa-miR-520c-3p C3orf55 miRanda miRanda
5481 chr3 157271104 157271104 1 + G T STAD 157271102 + 157271082 157271122 41 AAACTCAAGCACTGATACGTCCGGAGAGCACTTGACCTGCC AAACTCAAGCACTGATACGTCCTGAGAGCACTTGACCTGCC < 41bp 0.857613365703964 0.597008522848373 0.13627401 0.07459262 prediction 0.521209685711183 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271102 chr3:157271104 stopgain 0.000 0 23 hm5C_associated_SNPs_62116 0 0 0 12 157271095 157271115 mRNA hsa-miR-520d-3p C3orf55 miRanda miRanda
5482 chr3 157271104 157271104 1 + G T STAD 157271102 + 157271082 157271122 41 AAACTCAAGCACTGATACGTCCGGAGAGCACTTGACCTGCC AAACTCAAGCACTGATACGTCCTGAGAGCACTTGACCTGCC < 41bp 0.857613365703964 0.597008522848373 0.13627401 0.07459262 prediction 0.521209685711183 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271102 chr3:157271104 stopgain 0.000 0 23 hm5C_associated_SNPs_62116 0 0 0 12 157271098 157271115 mRNA hsa-miR-302e C3orf55 miRanda miRanda
5483 chr6 154411245 154411245 1 + G T rs62638690 154411243 + 154411223 154411263 41 AATGCCAAAATTATCAATGTCTGCAACTGGATCCTCTCTTC AATGCCAAAATTATCAATGTCTTCAACTGGATCCTCTCTTC < 41bp 0.780630826106395 0.520073412901814 0.03473836 0.02634111 prediction 0.521114826409162 Functional Loss - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154411243 chr6:154411245 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_62126 0 0 0 1 154411235 154411254 mRNA hsa-miR-145 OPRM1 miRanda miRanda
5484 chr19 36205902 36205902 1 + A C BLCA 36205898 + 36205878 36205918 41 CTAAAAAGCCAGATCCAGGCCTGAAGAAACATCAGGAGGAG CTAAAAAGCCAGATCCAGGCCTGACGAAACATCAGGAGGAG < 41bp 0.760507962277462 0.345149189385634 0.08679333 0.07844183 prediction 0.521015924554924 Functional Loss - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205898 chr19:36205902 nonsynonymous SNV 0.014 1 25 hm5C_associated_SNPs_62140 0 0 0 1 36205894 36205923 mRNA hsa-miR-149 ZBTB32 miRanda miRanda
5485 chrX 2800677 2800677 1 + A C rs1268 2800673 + 2800653 2800693 41 GTTGGATGGTCATCGGCTTTCAGAAGGAGACCACGGGAATG GTTGGATGGTCATCGGCTTTCAGACGGAGACCACGGGAATG < 41bp 0.76041585985272 0.438154513473494 0.9116816 0.8936577 prediction 0.520831719705441 Functional Loss - GYG2 ENSG00000056998 UTR3 Human protein_coding chrX:2800673 chrX:2800677 . . 0 25 hm5C_associated_SNPs_62161 0 0 1 1 2800665 2800688 mRNA hsa-miR-187 GYG2 miRanda miRanda
5486 chr15 75189921 75189921 1 + G T UCEC 75189919 + 75189899 75189939 41 CCAGCATCCTCCTGATGGTACAGGGGACAGTAATAGCCAGC CCAGCATCCTCCTGATGGTACATGGGACAGTAATAGCCAGC < 41bp 0.760413518833215 0.417385542023998 0.56045157 0.12461129 prediction 0.52082703766643 Functional Loss - MPI ENSG00000178802 CDS Human protein_coding chr15:75189919 chr15:75189921 nonsynonymous SNV 0.516 1 23 hm5C_associated_SNPs_62162 0 0 1 2 75189901 75189924 mRNA hsa-miR-339-5p MPI miRanda miRanda
5487 chr15 75189921 75189921 1 + G T UCEC 75189919 + 75189899 75189939 41 CCAGCATCCTCCTGATGGTACAGGGGACAGTAATAGCCAGC CCAGCATCCTCCTGATGGTACATGGGACAGTAATAGCCAGC < 41bp 0.760413518833215 0.417385542023998 0.56045157 0.12461129 prediction 0.52082703766643 Functional Loss - MPI ENSG00000178802 CDS Human protein_coding chr15:75189919 chr15:75189921 nonsynonymous SNV 0.516 1 23 hm5C_associated_SNPs_62162 0 0 1 2 75189902 75189923 mRNA hsa-miR-486-5p MPI miRanda miRanda
5488 chr1 1336361 1336361 1 + G T rs559819406 1336359 + 1336339 1336379 41 CTGTCCTTGACCCTGTTGTCCAGGACTGTTTACCAAGGGCT CTGTCCTTGACCCTGTTGTCCATGACTGTTTACCAAGGGCT < 41bp 0.849276699484755 0.589096719653249 0.47426024 0.10022277 prediction 0.520359959663013 Functional Loss - LOC148413 ENSG00000224870 UTR3 Human processed_transcript chr1:1336359 chr1:1336361 . . 0 23 hm5C_associated_SNPs_62234 0 0 1 2 1336349 1336369 mRNA hsa-miR-212 LOC148413 miRanda miRanda
5489 chr1 1336361 1336361 1 + G T rs559819406 1336359 + 1336339 1336379 41 CTGTCCTTGACCCTGTTGTCCAGGACTGTTTACCAAGGGCT CTGTCCTTGACCCTGTTGTCCATGACTGTTTACCAAGGGCT < 41bp 0.849276699484755 0.589096719653249 0.47426024 0.10022277 prediction 0.520359959663013 Functional Loss - LOC148413 ENSG00000224870 UTR3 Human processed_transcript chr1:1336359 chr1:1336361 . . 0 23 hm5C_associated_SNPs_62234 0 0 1 2 1336346 1336369 mRNA hsa-miR-132 LOC148413 miRanda miRanda
5490 chr11 119032689 119032689 1 + A C rs3802885 119032685 + 119032665 119032705 41 TCCGGAGTGACAGGCACATACATGAGAACAGGCCATCTCAG TCCGGAGTGACAGGCACATACATGCGAACAGGCCATCTCAG < 41bp 0.760114207921331 0.410866447583414 0.29583275 0.24106348 prediction 0.520228415842663 Functional Loss - ABCG4 ENSG00000172350 UTR3 Human protein_coding chr11:119032685 chr11:119032689 . . 0 25 hm5C_associated_SNPs_62252 0 0 0 1 119032668 119032690 mRNA hsa-miR-433 ABCG4 miRanda miRanda
5491 chr19 17835951 17835951 1 + G T LUSC 17835949 + 17835929 17835969 41 GGGGGAGCTGCTGCTACAGACAGGGGGCTTCTCGCCTCACC GGGGGAGCTGCTGCTACAGACATGGGGCTTCTCGCCTCACC < 41bp 0.888675742346222 0.628699672131972 0.94842744 0.8664323 prediction 0.5199521404285 Functional Loss - MAP1S ENSG00000130479 CDS Human protein_coding chr19:17835949 chr19:17835951 nonsynonymous SNV 0.254 4 23 hm5C_associated_SNPs_62286 0 0 1 1 17835930 17835954 mRNA hsa-miR-339-5p MAP1S miRanda miRanda
5492 chr9 72785518 72785518 1 + G T GBM 72785515 + 72785495 72785535 41 AGAAACTCCCACTTCCTACACAGGACCAAAGGGAGATCACA AGAAACTCCCACTTCCTACACAGTACCAAAGGGAGATCACA < 41bp 0.759869074809767 0.366013073050864 0.11210987 0.024314106 prediction 0.519738149619533 Functional Loss - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72785515 chr9:72785518 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_62322 0 0 0 2 72785503 72785524 mRNA hsa-miR-133a MAMDC2 miRanda miRanda
5493 chr9 72785518 72785518 1 + G T GBM 72785515 + 72785495 72785535 41 AGAAACTCCCACTTCCTACACAGGACCAAAGGGAGATCACA AGAAACTCCCACTTCCTACACAGTACCAAAGGGAGATCACA < 41bp 0.759869074809767 0.366013073050864 0.11210987 0.024314106 prediction 0.519738149619533 Functional Loss - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72785515 chr9:72785518 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_62322 0 0 0 2 72785503 72785524 mRNA hsa-miR-133b MAMDC2 miRanda miRanda
5494 chr6 39047386 39047386 1 + G T COAD 39047383 + 39047363 39047403 41 TCATCCCCCTGCTGGGGACTCATGAGGTCATCTTTGCCTTT TCATCCCCCTGCTGGGGACTCATTAGGTCATCTTTGCCTTT < 41bp 0.759826496064947 0.361091515116392 0.39423788 0.16058302 prediction 0.519652992129895 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39047383 chr6:39047386 stopgain 0.998 1 24 hm5C_associated_SNPs_62333 0 0 0 3 39047379 39047401 mRNA hsa-miR-31 GLP1R miRanda miRanda
5495 chr6 39047386 39047386 1 + G T COAD 39047383 + 39047363 39047403 41 TCATCCCCCTGCTGGGGACTCATGAGGTCATCTTTGCCTTT TCATCCCCCTGCTGGGGACTCATTAGGTCATCTTTGCCTTT < 41bp 0.759826496064947 0.361091515116392 0.39423788 0.16058302 prediction 0.519652992129895 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39047383 chr6:39047386 stopgain 0.998 1 24 hm5C_associated_SNPs_62333 0 0 0 3 39047372 39047393 mRNA hsa-miR-192 GLP1R miRanda miRanda
5496 chr6 39047386 39047386 1 + G T COAD 39047383 + 39047363 39047403 41 TCATCCCCCTGCTGGGGACTCATGAGGTCATCTTTGCCTTT TCATCCCCCTGCTGGGGACTCATTAGGTCATCTTTGCCTTT < 41bp 0.759826496064947 0.361091515116392 0.39423788 0.16058302 prediction 0.519652992129895 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39047383 chr6:39047386 stopgain 0.998 1 24 hm5C_associated_SNPs_62333 0 0 0 3 39047372 39047393 mRNA hsa-miR-215 GLP1R miRanda miRanda
5497 chr3 56647651 56647651 1 + G T UCEC 56647649 + 56647629 56647669 41 GCCCAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGGAGGA GCCCAGGTAGAAGAGAAGCGCATGAAGAAACAACTGGAGGA < 41bp 0.861525241909386 0.601788233228651 0.8412328 0.35783693 prediction 0.51947401736147 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56647649 chr3:56647651 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_62355 0 0 1 2 56647646 56647666 mRNA hsa-miR-199b-5p CCDC66 miRanda miRanda
5498 chr3 56647651 56647651 1 + G T UCEC 56647649 + 56647629 56647669 41 GCCCAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGGAGGA GCCCAGGTAGAAGAGAAGCGCATGAAGAAACAACTGGAGGA < 41bp 0.861525241909386 0.601788233228651 0.8412328 0.35783693 prediction 0.51947401736147 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56647649 chr3:56647651 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_62355 0 0 1 2 56647644 56647667 mRNA hsa-miR-145 CCDC66 miRanda miRanda
5499 chr8 9588516 9588516 1 + C T UCEC 9588514 + 9588494 9588534 41 TTGTAGAGTACCTGCTACACCACGGTGCCGATGTCCATGCC TTGTAGAGTACCTGCTACACCATGGTGCCGATGTCCATGCC < 41bp 0.759473566781698 0.48884329689282 0.31933898 0.27052915 prediction 0.518947133563395 Functional Loss - TNKS ENSG00000173273 CDS Human protein_coding chr8:9588514 chr8:9588516 synonymous SNV . 0 23 hm5C_associated_SNPs_62413 0 0 1 1 9588516 9588539 mRNA hsa-miR-9 TNKS miRanda miRanda
5500 chr12 58016619 58016619 1 + G T LUAD 58016616 + 58016596 58016636 41 TGGCTGAGCTGCCCAGGATTCTGGCTGACTCGCTGCCCATT TGGCTGAGCTGCCCAGGATTCTGTCTGACTCGCTGCCCATT < 41bp 0.759399922265648 0.356651837544062 0.90760493 0.6557188 prediction 0.518799844531295 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58016616 chr12:58016619 nonsynonymous SNV 0.942 1 24 hm5C_associated_SNPs_62430 0 0 0 1 58016617 58016642 mRNA hsa-miR-301a SLC26A10 miRanda miRanda
5501 chr2 88474290 88474290 1 + G T BLCA 88474288 + 88474268 88474308 41 TTTAAGGACCTGTCCCTGTCCTGCACAACACAGTTCCTGCA TTTAAGGACCTGTCCCTGTCCTTCACAACACAGTTCCTGCA < 41bp 0.759314954904957 0.434016289547423 0.08792713 0.06036511 prediction 0.518629909809914 Functional Loss - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88474288 chr2:88474290 nonsynonymous SNV 0.979 1 23 hm5C_associated_SNPs_62458 0 0 0 1 88474286 88474307 mRNA hsa-miR-873 THNSL2 miRanda miRanda
5502 chr19 41442157 41442157 1 + G T UCEC 41442155 + 41442135 41442175 41 TCATCATGGACCCAGTCTACCAGGGATATGGTGAGGGCTTC TCATCATGGACCCAGTCTACCATGGATATGGTGAGGGCTTC < 41bp 0.870826217212083 0.611747056223132 0.90777946 0.20309782 prediction 0.518158321977904 Functional Loss - CYP2B7P ENSG00000256612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:41442155 chr19:41442157 . . 0 23 hm5C_associated_SNPs_62505 0 0 0 1 41442157 41442164 mRNA hsa-miR-182 CYP2B7P1 miRanda miRanda
5503 chr12 120428048 120428048 1 + G T SARC 120428045 + 120428025 120428065 41 AGGCGCTGCTCGAGAGGAACCAGGACATGAGCCGGCAGTAC AGGCGCTGCTCGAGAGGAACCAGTACATGAGCCGGCAGTAC < 41bp 0.907072905029887 0.648116161329555 0.8895829 0.8202002 prediction 0.517913487400664 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120428045 chr12:120428048 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_62543 0 0 1 1 120428040 120428066 mRNA hsa-miR-346 CCDC64 miRanda miRanda
5504 chr15 83424801 83424801 1 + G T PAAD 83424798 + 83424778 83424818 41 TCTTGTTTGCAAAATAAATTCAAGACCTACTTATCTACCAA TCTTGTTTGCAAAATAAATTCAATACCTACTTATCTACCAA < 41bp 0.758803913446436 0.454245725848564 0.118249476 0.14231244 prediction 0.517607826892872 Functional Loss - SCARNA15 ENSG00000252690 ncRNA_exonic Human processed_transcript chr15:83424798 chr15:83424801 . . 0 24 hm5C_associated_SNPs_62587 0 0 1 1 83424797 83424817 mRNA hsa-miR-379 SCARNA15 miRanda miRanda
5505 chr1 100606565 100606565 1 + C T HNSC 100606563 + 100606543 100606583 41 ATCCTAGTGGAAAAGGTGACCACAAGATTCAAGGTAAGTGA ATCCTAGTGGAAAAGGTGACCATAAGATTCAAGGTAAGTGA < 41bp 0.758782966627647 0.491486154338946 0.0418638 0.03834337 prediction 0.517565933255295 Functional Loss - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100606563 chr1:100606565 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_62590 0 0 1 2 100606546 100606569 mRNA hsa-miR-9 CCDC76 miRanda miRanda
5506 chr1 100606565 100606565 1 + C T HNSC 100606563 + 100606543 100606583 41 ATCCTAGTGGAAAAGGTGACCACAAGATTCAAGGTAAGTGA ATCCTAGTGGAAAAGGTGACCATAAGATTCAAGGTAAGTGA < 41bp 0.758782966627647 0.491486154338946 0.0418638 0.03834337 prediction 0.517565933255295 Functional Loss - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100606563 chr1:100606565 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_62590 0 0 1 2 100606548 100606568 mRNA hsa-miR-599 CCDC76 miRanda miRanda
5507 chr1 82456281 82456281 1 + A T LUAD 82456277 + 82456257 82456297 41 AACAACTTACGGGGCAGCAGCAAGACTCACAACCTCGAGCT AACAACTTACGGGGCAGCAGCAAGTCTCACAACCTCGAGCT < 41bp 0.758755168044983 0.469970743564873 0.49942762 0.17209244 prediction 0.517510336089966 Functional Loss - ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82456277 chr1:82456281 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_62595 0 0 1 1 82456264 82456283 mRNA hsa-miR-431 LPHN2 miRanda miRanda
5508 chr8 73959291 73959291 1 + A C rs117652973 73959287 + 73959267 73959307 41 GTGGGGAGCGGGAGCAAGAGCTGAAAAACTTACCTACTGGG GTGGGGAGCGGGAGCAAGAGCTGACAAACTTACCTACTGGG < 41bp 0.865178297710462 0.60643288530904 0.87136304 0.6762706 prediction 0.517490824802843 Functional Loss - TERF1 ENSG00000147601 UTR3 Human protein_coding chr8:73959287 chr8:73959291 . . 0 25 hm5C_associated_SNPs_62596 0 0 1 2 73959279 73959302 mRNA hsa-miR-196a TERF1 miRanda miRanda
5509 chr8 73959291 73959291 1 + A C rs117652973 73959287 + 73959267 73959307 41 GTGGGGAGCGGGAGCAAGAGCTGAAAAACTTACCTACTGGG GTGGGGAGCGGGAGCAAGAGCTGACAAACTTACCTACTGGG < 41bp 0.865178297710462 0.60643288530904 0.87136304 0.6762706 prediction 0.517490824802843 Functional Loss - TERF1 ENSG00000147601 UTR3 Human protein_coding chr8:73959287 chr8:73959291 . . 0 25 hm5C_associated_SNPs_62596 0 0 1 2 73959279 73959302 mRNA hsa-miR-196b TERF1 miRanda miRanda
5510 chr16 31497523 31497523 1 + G T UCEC 31497521 + 31497501 31497541 41 TCTCCGGAGCTGTATTCATCCAGCAGGCTCTGGGCTGGAAC TCTCCGGAGCTGTATTCATCCATCAGGCTCTGGGCTGGAAC < 41bp 0.880949405272482 0.622727300721099 0.40575832 0.15151295 prediction 0.516444209102767 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31497521 chr16:31497523 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_62744 0 0 0 1 31497508 31497528 mRNA hsa-miR-370 SLC5A2 miRanda miRanda
5511 chr7 127230153 127230153 1 + G T OV 127230150 + 127230130 127230170 41 TTGTGGTGGACAGTAATGACCGGGAGCGGGTCCAAGAATCT TTGTGGTGGACAGTAATGACCGGTAGCGGGTCCAAGAATCT < 41bp 0.91496859476167 0.656792979672788 0.40655392 0.062831044 prediction 0.516351230177764 Functional Loss - ARF5 ENSG00000004059 CDS Human protein_coding chr7:127230150 chr7:127230153 stopgain 1.000 1 24 hm5C_associated_SNPs_62751 0 0 1 1 127230152 127230175 mRNA hsa-miR-214 ARF5 miRanda miRanda
5512 chr1 233807173 233807173 1 + C T BLCA 233807171 + 233807151 233807191 41 CATGACCAACTGTCCTTCTCCTCGATCACAGACCAGGCAGC CATGACCAACTGTCCTTCTCCTTGATCACAGACCAGGCAGC < 41bp 0.800298472871169 0.542285282045561 0.26373115 0.09231827 prediction 0.516026381651215 Functional Loss - KCNK1 ENSG00000135750 CDS Human protein_coding chr1:233807171 chr1:233807173 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_62806 0 0 1 1 233807172 233807193 mRNA hsa-miR-22 KCNK1 miRanda miRanda
5513 chr19 7711219 7711219 1 + G C GBM 7711215 + 7711195 7711235 41 TCCCGCTGGACCCCGGTCATCAAGGATGTAATGGAGGTACT TCCCGCTGGACCCCGGTCATCAAGCATGTAATGGAGGTACT < 41bp 0.813162038492823 0.55517865807432 0.8995801 0.36610135 prediction 0.515966760837005 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7711215 chr19:7711219 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_62814 0 0 1 1 7711207 7711230 mRNA hsa-miR-136 STXBP2 miRanda miRanda
5514 chr3 129035550 129035550 1 + G T rs62266915 129035547 + 129035527 129035567 41 GGGGGCTCCAGGCCTGCCCGCAAGAGGAGCTTTAATTTGTC GGGGGCTCCAGGCCTGCCCGCAATAGGAGCTTTAATTTGTC < 41bp 0.757809210681785 0.365819530050992 0.73550797 0.19461519 prediction 0.51561842136357 Functional Loss - H1FX-AS1 ENSG00000206417 ncRNA_intronic Human antisense chr3:129035547 chr3:129035550 . . 0 24 hm5C_associated_SNPs_62857 0 0 1 1 129035548 129035571 mRNA hsa-miR-182 C3orf47 miRanda miRanda
5515 chr2 120195983 120195983 1 + G T rs58035961 120195980 + 120195960 120196000 41 GGTAATGATTAACACCCATGCTGGGGATGCATGGAGGTGAA GGTAATGATTAACACCCATGCTGTGGATGCATGGAGGTGAA < 41bp 0.832850248412046 0.5754797018623 0.44354838 0.08724663 prediction 0.514741093099492 Functional Loss - TMEM37 ENSG00000171227 UTR3 Human protein_coding chr2:120195980 chr2:120195983 . . 0 24 hm5C_associated_SNPs_62992 0 0 1 1 120195971 120195990 mRNA hsa-miR-324-5p TMEM37 miRanda miRanda
5516 chrX 54578117 54578117 1 + A C STAD 54578113 + 54578093 54578133 41 TGCGTAACTGCGTCCACGTGCAGAAGCTGGCAGACCCTGTG TGCGTAACTGCGTCCACGTGCAGACGCTGGCAGACCCTGTG < 41bp 0.757174867101732 0.348043026098573 0.3082258 0.2616871 prediction 0.514349734203463 Functional Loss - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54578113 chrX:54578117 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_63049 0 0 1 1 54578108 54578128 mRNA hsa-miR-346 GNL3L miRanda miRanda
5517 chr8 27657189 27657189 1 + G T LUSC 27657187 + 27657167 27657207 41 GTAGAATCTGGGTTTTCAGACTGAAGAGAAGAAAGCGCATT GTAGAATCTGGGTTTTCAGACTTAAGAGAAGAAAGCGCATT < 41bp 0.757094474899356 0.43777055588536 0.24411082 0.27237788 prediction 0.514188949798712 Functional Loss - ESCO2 ENSG00000171320 CDS Human protein_coding chr8:27657187 chr8:27657189 synonymous SNV . 0 23 hm5C_associated_SNPs_63068 0 0 1 2 27657184 27657207 mRNA hsa-miR-135a ESCO2 miRanda miRanda
5518 chr8 27657189 27657189 1 + G T LUSC 27657187 + 27657167 27657207 41 GTAGAATCTGGGTTTTCAGACTGAAGAGAAGAAAGCGCATT GTAGAATCTGGGTTTTCAGACTTAAGAGAAGAAAGCGCATT < 41bp 0.757094474899356 0.43777055588536 0.24411082 0.27237788 prediction 0.514188949798712 Functional Loss - ESCO2 ENSG00000171320 CDS Human protein_coding chr8:27657187 chr8:27657189 synonymous SNV . 0 23 hm5C_associated_SNPs_63068 0 0 1 2 27657184 27657207 mRNA hsa-miR-135b ESCO2 miRanda miRanda
5519 chr6 160858112 160858112 1 + C T UCEC 160858110 + 160858090 160858130 41 CTCTATATAGACTTTTTCATCTCGGGCGTGGTGGAACTGCC CTCTATATAGACTTTTTCATCTTGGGCGTGGTGGAACTGCC < 41bp 0.818218818870071 0.561317822174339 0.24721447 0.12170154 prediction 0.513801993391463 Functional Loss - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160858110 chr6:160858112 nonsynonymous SNV 0.879 3 23 hm5C_associated_SNPs_63118 0 0 0 1 160858093 160858113 mRNA hsa-miR-143 SLC22A3 miRanda miRanda
5520 chr9 126140431 126140431 1 + G C rs190982126 126140427 + 126140407 126140447 41 GAGGACTTGAAGGAAGCCCTCTGGGTTGTCTGCTGAGTACA GAGGACTTGAAGGAAGCCCTCTGGCTTGTCTGCTGAGTACA < 41bp 0.756853623839839 0.49151461560412 0.5041977 0.20923793 prediction 0.513707247679677 Functional Loss - CRB2 ENSG00000148204 UTR3 Human protein_coding chr9:126140427 chr9:126140431 . . 0 25 hm5C_associated_SNPs_63130 0 0 0 1 126140419 126140441 mRNA hsa-miR-424 CRB2 miRanda miRanda
5521 chr7 65160093 65160093 1 + A T HNSC 65160089 + 65160069 65160109 41 TTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGA TTGAAAGAGTGTATAGTCTTCAGCTCTTGGACCCTCAGGGA < 41bp 0.841367885533392 0.584550173772051 0.47566602 0.387854 prediction 0.513635423522683 Functional Loss - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65160089 chr7:65160093 . . 0 25 hm5C_associated_SNPs_63138 0 0 0 2 65160088 65160109 mRNA hsa-miR-125b INTS4L2 miRanda miRanda
5522 chr7 65160093 65160093 1 + A T HNSC 65160089 + 65160069 65160109 41 TTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGA TTGAAAGAGTGTATAGTCTTCAGCTCTTGGACCCTCAGGGA < 41bp 0.841367885533392 0.584550173772051 0.47566602 0.387854 prediction 0.513635423522683 Functional Loss - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65160089 chr7:65160093 . . 0 25 hm5C_associated_SNPs_63138 0 0 0 2 65160086 65160109 mRNA hsa-miR-125a-5p INTS4L2 miRanda miRanda
5523 chr3 38354509 38354509 1 + C T COAD 38354507 + 38354487 38354527 41 CAGGATTCTCCCGGAGTCCCCGCGGTGGCTGATGATGAAAG CAGGATTCTCCCGGAGTCCCCGTGGTGGCTGATGATGAAAG < 41bp 0.759946072700528 0.503225649168834 0.66587853 0.45643565 prediction 0.513440847063389 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38354507 chr3:38354509 nonsynonymous SNV 0.253 4 23 hm5C_associated_SNPs_63173 0 0 0 2 38354509 38354531 mRNA hsa-miR-204 SLC22A14 miRanda miRanda
5524 chr3 38354509 38354509 1 + C T COAD 38354507 + 38354487 38354527 41 CAGGATTCTCCCGGAGTCCCCGCGGTGGCTGATGATGAAAG CAGGATTCTCCCGGAGTCCCCGTGGTGGCTGATGATGAAAG < 41bp 0.759946072700528 0.503225649168834 0.66587853 0.45643565 prediction 0.513440847063389 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38354507 chr3:38354509 nonsynonymous SNV 0.253 4 23 hm5C_associated_SNPs_63173 0 0 0 2 38354509 38354531 mRNA hsa-miR-211 SLC22A14 miRanda miRanda
5525 chrX 7066097 7066097 1 + G T UCEC 7066095 + 7066075 7066115 41 GCGGCTGCACACTACCCACCCAGAAGAAGTCCGTCCATGTC GCGGCTGCACACTACCCACCCATAAGAAGTCCGTCCATGTC < 41bp 0.756690929490188 0.414220710994057 0.81194353 0.019546777 prediction 0.513381858980376 Functional Loss - PUDP ENSG00000130021 CDS Human protein_coding chrX:7066095 chrX:7066097 nonsynonymous SNV 0.972 2 23 hm5C_associated_SNPs_63179 0 0 0 1 7066090 7066111 mRNA hsa-miR-184 STS miRanda miRanda
5526 chr5 109220373 109220373 1 + G C rs61747294 109220369 + 109220349 109220389 41 CCTGAGGGTCCTGAGCGCCACTCGGCCATTGGGTCGGATCA CCTGAGGGTCCTGAGCGCCACTCGCCCATTGGGTCGGATCA < 41bp 0.756688967043196 0.486479163825916 0.2945324 0.1393686 prediction 0.513377934086391 Functional Loss - LINC01848 ENSG00000253224 ncRNA_exonic Human processed_pseudogene chr5:109220369 chr5:109220373 . . 0 25 hm5C_associated_SNPs_63180 0 0 0 2 109220363 109220385 lncRNA hsa-miR-551a LINC01848 miRanda starBase2
5527 chr5 109220373 109220373 1 + G C rs61747294 109220369 + 109220349 109220389 41 CCTGAGGGTCCTGAGCGCCACTCGGCCATTGGGTCGGATCA CCTGAGGGTCCTGAGCGCCACTCGCCCATTGGGTCGGATCA < 41bp 0.756688967043196 0.486479163825916 0.2945324 0.1393686 prediction 0.513377934086391 Functional Loss - LINC01848 ENSG00000253224 ncRNA_exonic Human processed_pseudogene chr5:109220369 chr5:109220373 . . 0 25 hm5C_associated_SNPs_63180 0 0 0 2 109220365 109220385 lncRNA hsa-miR-551b-3p LINC01848 miRanda starBase2
5528 chr1 160141540 160141540 1 + G T BRCA 160141537 + 160141517 160141557 41 TGTGAGCAAGTGTCGCAGTGCAGGAATTAAGGTAAATACTT TGTGAGCAAGTGTCGCAGTGCAGTAATTAAGGTAAATACTT < 41bp 0.75656151822476 0.36877815103092 0.25698 0.17778128 prediction 0.513123036449521 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160141537 chr1:160141540 nonsynonymous SNV 0.933 5 24 hm5C_associated_SNPs_63216 0 0 0 1 160141533 160141547 mRNA hsa-miR-425 ATP1A4 miRanda miRanda
5529 chr1 148932887 148932887 1 + G T CESC 148932885 + 148932865 148932905 41 GGTGGGAGACGGGTGAGGTACAGGCTCAGTCTGCGGCCAAG GGTGGGAGACGGGTGAGGTACATGCTCAGTCTGCGGCCAAG < 41bp 0.886809670392722 0.630510349963767 0.7009043 0.2783722 prediction 0.512598640857908 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932885 chr1:148932887 . . 0 23 hm5C_associated_SNPs_63303 0 0 0 1 148932867 148932889 mRNA hsa-miR-486-5p LOC645166 miRanda miRanda
5530 chr16 77760431 77760431 1 + A C rs1318927 77760427 + 77760407 77760447 41 CCTGAGGCTGGGTATGGTGGCTCAAGCATGTAATCCCAGCA CCTGAGGCTGGGTATGGTGGCTCACGCATGTAATCCCAGCA < 41bp 0.756272652811298 0.418299080795435 0.17316416 0.032800734 prediction 0.512545305622595 Functional Loss - NUDT7 ENSG00000140876 intronic Human protein_coding chr16:77760427 chr16:77760431 . . 0 25 hm5C_associated_SNPs_63315 0 0 0 5 77760430 77760452 mRNA hsa-miR-17 NUDT7 miRanda miRanda
5531 chr16 77760431 77760431 1 + A C rs1318927 77760427 + 77760407 77760447 41 CCTGAGGCTGGGTATGGTGGCTCAAGCATGTAATCCCAGCA CCTGAGGCTGGGTATGGTGGCTCACGCATGTAATCCCAGCA < 41bp 0.756272652811298 0.418299080795435 0.17316416 0.032800734 prediction 0.512545305622595 Functional Loss - NUDT7 ENSG00000140876 intronic Human protein_coding chr16:77760427 chr16:77760431 . . 0 25 hm5C_associated_SNPs_63315 0 0 0 5 77760430 77760452 mRNA hsa-miR-20a NUDT7 miRanda miRanda
5532 chr16 77760431 77760431 1 + A C rs1318927 77760427 + 77760407 77760447 41 CCTGAGGCTGGGTATGGTGGCTCAAGCATGTAATCCCAGCA CCTGAGGCTGGGTATGGTGGCTCACGCATGTAATCCCAGCA < 41bp 0.756272652811298 0.418299080795435 0.17316416 0.032800734 prediction 0.512545305622595 Functional Loss - NUDT7 ENSG00000140876 intronic Human protein_coding chr16:77760427 chr16:77760431 . . 0 25 hm5C_associated_SNPs_63315 0 0 0 5 77760430 77760452 mRNA hsa-miR-93 NUDT7 miRanda miRanda
5533 chr16 77760431 77760431 1 + A C rs1318927 77760427 + 77760407 77760447 41 CCTGAGGCTGGGTATGGTGGCTCAAGCATGTAATCCCAGCA CCTGAGGCTGGGTATGGTGGCTCACGCATGTAATCCCAGCA < 41bp 0.756272652811298 0.418299080795435 0.17316416 0.032800734 prediction 0.512545305622595 Functional Loss - NUDT7 ENSG00000140876 intronic Human protein_coding chr16:77760427 chr16:77760431 . . 0 25 hm5C_associated_SNPs_63315 0 0 0 5 77760430 77760452 mRNA hsa-miR-106a NUDT7 miRanda miRanda
5534 chr16 77760431 77760431 1 + A C rs1318927 77760427 + 77760407 77760447 41 CCTGAGGCTGGGTATGGTGGCTCAAGCATGTAATCCCAGCA CCTGAGGCTGGGTATGGTGGCTCACGCATGTAATCCCAGCA < 41bp 0.756272652811298 0.418299080795435 0.17316416 0.032800734 prediction 0.512545305622595 Functional Loss - NUDT7 ENSG00000140876 intronic Human protein_coding chr16:77760427 chr16:77760431 . . 0 25 hm5C_associated_SNPs_63315 0 0 0 5 77760430 77760452 mRNA hsa-miR-20b NUDT7 miRanda miRanda
5535 chr6 54173443 54173443 1 + A C COAD 54173439 + 54173419 54173459 41 TATCTCAAAGAGAAGTGGACCTAGAGGCTTATTTCACTAGG TATCTCAAAGAGAAGTGGACCTAGCGGCTTATTTCACTAGG < 41bp 0.756179183446456 0.365918250705718 0.08515486 0.051173955 prediction 0.512358366892912 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54173439 chr6:54173443 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_63352 0 0 0 1 54173441 54173462 mRNA hsa-miR-384 TINAG miRanda miRanda
5536 chr5 149563761 149563761 1 + A C rs73796348 149563757 + 149563737 149563777 41 GGCACTGAGCCCTTCCCAGGCTGGATACTAAGCACAAAGCC GGCACTGAGCCCTTCCCAGGCTGGCTACTAAGCACAAAGCC < 41bp 0.756140645939384 0.424035870748213 0.104765356 0.06764227 prediction 0.512281291878767 Functional Loss - CDX1 ENSG00000113722 UTR3 Human protein_coding chr5:149563757 chr5:149563761 . . 0 25 hm5C_associated_SNPs_63365 0 0 0 1 149563751 149563773 mRNA hsa-miR-218 CDX1 miRanda miRanda
5537 chr8 110573096 110573096 1 + G T GBM 110573094 + 110573074 110573114 41 TAGGTGACTTAGATACCTGGCAGGAAAATACCAATGCATGG TAGGTGACTTAGATACCTGGCATGAAAATACCAATGCATGG < 41bp 0.756095022312671 0.423034971040064 0.48562175 0.16615957 prediction 0.512190044625341 Functional Loss - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573094 chr8:110573096 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_63379 0 0 1 3 110573091 110573112 mRNA hsa-miR-33a EBAG9 miRanda miRanda
5538 chr8 110573096 110573096 1 + G T GBM 110573094 + 110573074 110573114 41 TAGGTGACTTAGATACCTGGCAGGAAAATACCAATGCATGG TAGGTGACTTAGATACCTGGCATGAAAATACCAATGCATGG < 41bp 0.756095022312671 0.423034971040064 0.48562175 0.16615957 prediction 0.512190044625341 Functional Loss - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573094 chr8:110573096 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_63379 0 0 1 3 110573093 110573115 mRNA hsa-miR-338-3p EBAG9 miRanda miRanda
5539 chr8 110573096 110573096 1 + G T GBM 110573094 + 110573074 110573114 41 TAGGTGACTTAGATACCTGGCAGGAAAATACCAATGCATGG TAGGTGACTTAGATACCTGGCATGAAAATACCAATGCATGG < 41bp 0.756095022312671 0.423034971040064 0.48562175 0.16615957 prediction 0.512190044625341 Functional Loss - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573094 chr8:110573096 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_63379 0 0 1 3 110573093 110573112 mRNA hsa-miR-33b EBAG9 miRanda miRanda
5540 chr8 110573097 110573097 1 + G T OV 110573094 + 110573074 110573114 41 TAGGTGACTTAGATACCTGGCAGGAAAATACCAATGCATGG TAGGTGACTTAGATACCTGGCAGTAAAATACCAATGCATGG < 41bp 0.756095022312671 0.380139511095141 0.48562175 0.17596796 prediction 0.512190044625341 Functional Loss - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573094 chr8:110573097 stopgain 0.999 1 24 hm5C_associated_SNPs_63380 0 0 1 3 110573091 110573112 mRNA hsa-miR-33a EBAG9 miRanda miRanda
5541 chr8 110573097 110573097 1 + G T OV 110573094 + 110573074 110573114 41 TAGGTGACTTAGATACCTGGCAGGAAAATACCAATGCATGG TAGGTGACTTAGATACCTGGCAGTAAAATACCAATGCATGG < 41bp 0.756095022312671 0.380139511095141 0.48562175 0.17596796 prediction 0.512190044625341 Functional Loss - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573094 chr8:110573097 stopgain 0.999 1 24 hm5C_associated_SNPs_63380 0 0 1 3 110573093 110573115 mRNA hsa-miR-338-3p EBAG9 miRanda miRanda
5542 chr8 110573097 110573097 1 + G T OV 110573094 + 110573074 110573114 41 TAGGTGACTTAGATACCTGGCAGGAAAATACCAATGCATGG TAGGTGACTTAGATACCTGGCAGTAAAATACCAATGCATGG < 41bp 0.756095022312671 0.380139511095141 0.48562175 0.17596796 prediction 0.512190044625341 Functional Loss - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573094 chr8:110573097 stopgain 0.999 1 24 hm5C_associated_SNPs_63380 0 0 1 3 110573093 110573112 mRNA hsa-miR-33b EBAG9 miRanda miRanda
5543 chr4 189357923 189357923 1 + A C rs314044 189357919 + 189357899 189357939 41 ATATGAAAAGAGGAAATATGCATGAATGCCCGCACGGAGAA ATATGAAAAGAGGAAATATGCATGCATGCCCGCACGGAGAA < 41bp 0.756019600023143 0.416417656870315 0.26207656 0.3615045 prediction 0.512039200046287 Functional Loss - TRIML1;LINC01060 ENSG00000249378 ncRNA_exonic Human lincRNA chr4:189357919 chr4:189357923 . . 0 25 hm5C_associated_SNPs_63403 0 0 0 1 189357903 189357925 mRNA hsa-miR-544 LOC401164 miRanda miRanda
5544 chr5 153830749 153830749 1 + C T UCEC 153830747 + 153830727 153830767 41 GTGACGATGGCGGAGATTCTCCCGAGCACGACACTGACATT GTGACGATGGCGGAGATTCTCCTGAGCACGACACTGACATT < 41bp 0.755974027999505 0.486336613697448 0.4352021 0.2960071 prediction 0.511948055999009 Functional Loss - SAP30L ENSG00000164576 CDS Human protein_coding chr5:153830747 chr5:153830749 synonymous SNV . 0 23 hm5C_associated_SNPs_63424 0 0 1 2 153830749 153830770 mRNA hsa-miR-1 SAP30L miRanda miRanda
5545 chr5 153830749 153830749 1 + C T UCEC 153830747 + 153830727 153830767 41 GTGACGATGGCGGAGATTCTCCCGAGCACGACACTGACATT GTGACGATGGCGGAGATTCTCCTGAGCACGACACTGACATT < 41bp 0.755974027999505 0.486336613697448 0.4352021 0.2960071 prediction 0.511948055999009 Functional Loss - SAP30L ENSG00000164576 CDS Human protein_coding chr5:153830747 chr5:153830749 synonymous SNV . 0 23 hm5C_associated_SNPs_63424 0 0 1 2 153830748 153830770 mRNA hsa-miR-206 SAP30L miRanda miRanda
5546 chr17 36288293 36288293 1 + A C ESCA 36288289 + 36288269 36288309 41 GAAATGAAGTTGAAAAACCCCGGAAGATACCAGGTACGCTC GAAATGAAGTTGAAAAACCCCGGACGATACCAGGTACGCTC < 41bp 0.755967121452434 0.372803817888141 0.36338872 0.26360533 prediction 0.511934242904868 Functional Loss - TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L ENSG00000185128 CDS Human other chr17:36288289 chr17:36288293 synonymous SNV . 0 25 hm5C_associated_SNPs_63426 0 0 1 2 36288292 36288301 mRNA hsa-miR-205 TBC1D3 miRanda miRanda
5547 chr17 36288293 36288293 1 + A C ESCA 36288289 + 36288269 36288309 41 GAAATGAAGTTGAAAAACCCCGGAAGATACCAGGTACGCTC GAAATGAAGTTGAAAAACCCCGGACGATACCAGGTACGCTC < 41bp 0.755967121452434 0.372803817888141 0.36338872 0.26360533 prediction 0.511934242904868 Functional Loss - TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L ENSG00000185128 CDS Human other chr17:36288289 chr17:36288293 synonymous SNV . 0 25 hm5C_associated_SNPs_63426 0 0 1 2 36288286 36288301 mRNA hsa-miR-433 TBC1D3 miRanda miRanda
5548 chrX 101818654 101818654 1 + G T UCEC 101818651 + 101818631 101818671 41 ATAGAGAAGGCTCCCAAAGTCAAGACCCTGAATCTCTCCAA ATAGAGAAGGCTCCCAAAGTCAATACCCTGAATCTCTCCAA < 41bp 0.910836531399732 0.655142953549045 0.22539341 0.035007566 prediction 0.511387155701373 Functional Loss - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101818651 chrX:101818654 . . 0 24 hm5C_associated_SNPs_63510 0 0 0 1 101818649 101818670 mRNA hsa-miR-185 NXF4 miRanda miRanda
5549 chr8 80553683 80553683 1 + T C UCEC 80553682 + 80553662 80553702 41 GCTGATCTTGAAGCCACCATCTCCTATCTCAGAAGCCCCAC GCTGATCTTGAAGCCACCATCCCCTATCTCAGAAGCCCCAC < 41bp 0.755661737780906 0.493510056622429 0.32393318 0.14283946 prediction 0.511323475561812 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80553682 chr8:80553683 synonymous SNV . 0 22 hm5C_associated_SNPs_63515 0 0 0 1 80553682 80553703 mRNA hsa-miR-491-5p STMN2 miRanda miRanda
5550 chr19 46180329 46180329 1 + G C rs76439420 46180325 + 46180305 46180345 41 CCTGGTGCTCGTGGGAGGCTCCGAGGAGGGCCACTTCCGCT CCTGGTGCTCGTGGGAGGCTCCGACGAGGGCCACTTCCGCT < 41bp 0.755643365336764 0.458247151727815 0.89746594 0.71252495 prediction 0.511286730673528 Functional Loss - GIPR ENSG00000010310 CDS Human protein_coding chr19:46180325 chr19:46180329 nonsynonymous SNV 0.955 4 25 hm5C_associated_SNPs_63523 0 0 1 1 46180316 46180338 mRNA hsa-miR-328 GIPR miRanda miRanda
5551 chr6 149699878 149699878 1 + A C rs541985795 149699874 + 149699854 149699894 41 CCTCATCTCAACAGCCAAATCAGCAAGGCCACCAGACCTCT CCTCATCTCAACAGCCAAATCAGCCAGGCCACCAGACCTCT < 41bp 0.755554050097946 0.338910623692689 0.11181384 0.09379125 prediction 0.511108100195892 Functional Loss - TAB2 ENSG00000055208 CDS Human protein_coding chr6:149699874 chr6:149699878 nonsynonymous SNV 0.786 0 25 hm5C_associated_SNPs_63545 0 0 1 1 149699869 149699894 mRNA hsa-miR-485-5p TAB2 miRanda miRanda
5552 chr7 21940666 21940666 1 - C G LUAD 21940667 - 21940647 21940687 41 GGCATGCCAGCTCCTTGAGACGGGCTTCAACAATGGTTCCT GGCATGCCAGCTCCTTGAGACCGGCTTCAACAATGGTTCCT < 41bp 0.755542937835333 0.498774300671805 0.75718725 0.25713557 prediction 0.511085875670666 Functional Loss - DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21940667 chr7:21940666 nonsynonymous SNV 0.782 2 22 hm5C_associated_SNPs_63550 0 0 1 2 21940655 21940676 mRNA hsa-miR-653 CDCA7L miRanda miRanda
5553 chr7 21940666 21940666 1 - C G LUAD 21940667 - 21940647 21940687 41 GGCATGCCAGCTCCTTGAGACGGGCTTCAACAATGGTTCCT GGCATGCCAGCTCCTTGAGACCGGCTTCAACAATGGTTCCT < 41bp 0.755542937835333 0.498774300671805 0.75718725 0.25713557 prediction 0.511085875670666 Functional Loss - DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21940667 chr7:21940666 nonsynonymous SNV 0.782 2 22 hm5C_associated_SNPs_63550 0 0 1 2 21940645 21940668 mRNA hsa-miR-873 CDCA7L miRanda miRanda
5554 chr5 82554407 82554407 1 + A T LUSC 82554403 + 82554383 82554423 41 TCTTGATGTCACTGATATTGCACCAAGTAGAAAAAGGAGAC TCTTGATGTCACTGATATTGCACCTAGTAGAAAAAGGAGAC < 41bp 0.755529653868617 0.4223598638266 0.12516671 0.056254834 prediction 0.511059307737233 Functional Loss - XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82554403 chr5:82554407 synonymous SNV . 0 25 hm5C_associated_SNPs_63556 0 0 0 6 82554402 82554423 mRNA hsa-miR-211 XRCC4 miRanda miRanda
5555 chr5 82554407 82554407 1 + A T LUSC 82554403 + 82554383 82554423 41 TCTTGATGTCACTGATATTGCACCAAGTAGAAAAAGGAGAC TCTTGATGTCACTGATATTGCACCTAGTAGAAAAAGGAGAC < 41bp 0.755529653868617 0.4223598638266 0.12516671 0.056254834 prediction 0.511059307737233 Functional Loss - XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82554403 chr5:82554407 synonymous SNV . 0 25 hm5C_associated_SNPs_63556 0 0 0 6 82554386 82554407 mRNA hsa-miR-130a XRCC4 miRanda miRanda
5556 chr5 82554407 82554407 1 + A T LUSC 82554403 + 82554383 82554423 41 TCTTGATGTCACTGATATTGCACCAAGTAGAAAAAGGAGAC TCTTGATGTCACTGATATTGCACCTAGTAGAAAAAGGAGAC < 41bp 0.755529653868617 0.4223598638266 0.12516671 0.056254834 prediction 0.511059307737233 Functional Loss - XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82554403 chr5:82554407 synonymous SNV . 0 25 hm5C_associated_SNPs_63556 0 0 0 6 82554385 82554407 mRNA hsa-miR-301a XRCC4 miRanda miRanda
5557 chr5 82554407 82554407 1 + A T LUSC 82554403 + 82554383 82554423 41 TCTTGATGTCACTGATATTGCACCAAGTAGAAAAAGGAGAC TCTTGATGTCACTGATATTGCACCTAGTAGAAAAAGGAGAC < 41bp 0.755529653868617 0.4223598638266 0.12516671 0.056254834 prediction 0.511059307737233 Functional Loss - XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82554403 chr5:82554407 synonymous SNV . 0 25 hm5C_associated_SNPs_63556 0 0 0 6 82554387 82554407 mRNA hsa-miR-130b XRCC4 miRanda miRanda
5558 chr5 82554407 82554407 1 + A T LUSC 82554403 + 82554383 82554423 41 TCTTGATGTCACTGATATTGCACCAAGTAGAAAAAGGAGAC TCTTGATGTCACTGATATTGCACCTAGTAGAAAAAGGAGAC < 41bp 0.755529653868617 0.4223598638266 0.12516671 0.056254834 prediction 0.511059307737233 Functional Loss - XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82554403 chr5:82554407 synonymous SNV . 0 25 hm5C_associated_SNPs_63556 0 0 0 6 82554385 82554407 mRNA hsa-miR-454 XRCC4 miRanda miRanda
5559 chr5 82554407 82554407 1 + A T LUSC 82554403 + 82554383 82554423 41 TCTTGATGTCACTGATATTGCACCAAGTAGAAAAAGGAGAC TCTTGATGTCACTGATATTGCACCTAGTAGAAAAAGGAGAC < 41bp 0.755529653868617 0.4223598638266 0.12516671 0.056254834 prediction 0.511059307737233 Functional Loss - XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82554403 chr5:82554407 synonymous SNV . 0 25 hm5C_associated_SNPs_63556 0 0 0 6 82554385 82554407 mRNA hsa-miR-301b XRCC4 miRanda miRanda
5560 chrX 123480538 123480538 1 + G T LUAD 123480536 + 123480516 123480556 41 TGGCAAAATCAGCAGGGAAACCGGCGAGAAGCTCCTGCTTG TGGCAAAATCAGCAGGGAAACCTGCGAGAAGCTCCTGCTTG < 41bp 0.755411742719397 0.406610442566842 0.9104935 0.7159179 prediction 0.510823485438793 Functional Loss - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123480536 chrX:123480538 nonsynonymous SNV 0.958 3 23 hm5C_associated_SNPs_63587 0 0 0 2 123480531 123480552 mRNA hsa-miR-28-5p SH2D1A miRanda miRanda
5561 chrX 123480538 123480538 1 + G T LUAD 123480536 + 123480516 123480556 41 TGGCAAAATCAGCAGGGAAACCGGCGAGAAGCTCCTGCTTG TGGCAAAATCAGCAGGGAAACCTGCGAGAAGCTCCTGCTTG < 41bp 0.755411742719397 0.406610442566842 0.9104935 0.7159179 prediction 0.510823485438793 Functional Loss - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123480536 chrX:123480538 nonsynonymous SNV 0.958 3 23 hm5C_associated_SNPs_63587 0 0 0 2 123480530 123480552 mRNA hsa-miR-708 SH2D1A miRanda miRanda
5562 chr2 158140834 158140834 1 + A T LUSC 158140830 + 158140810 158140850 41 GTTCACAATAACCTCCCAACCACCAGTGTCATCATGTGCTT GTTCACAATAACCTCCCAACCACCTGTGTCATCATGTGCTT < 41bp 0.868978453891782 0.613578624783622 0.03387159 0.043063313 prediction 0.51079965821632 Functional Loss - GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158140830 chr2:158140834 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_63590 0 0 1 1 158140820 158140842 mRNA hsa-miR-425 GALNT5 miRanda miRanda
5563 chr1 89889961 89889961 1 + G T SKCM 89889959 + 89889939 89889979 41 ACTGAGAAGATGGAGAGCGACAGGGTCCAGTTGCTGGAAGA ACTGAGAAGATGGAGAGCGACATGGTCCAGTTGCTGGAAGA < 41bp 0.847630298856968 0.592256293994157 0.73318744 0.19330218 prediction 0.510748009725621 Functional Loss - GBP1P1 ENSG00000225492 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:89889959 chr1:89889961 . . 0 23 hm5C_associated_SNPs_63599 0 0 1 2 89889939 89889964 mRNA hsa-miR-339-5p LOC400759 miRanda miRanda
5564 chr1 89889961 89889961 1 + G T SKCM 89889959 + 89889939 89889979 41 ACTGAGAAGATGGAGAGCGACAGGGTCCAGTTGCTGGAAGA ACTGAGAAGATGGAGAGCGACATGGTCCAGTTGCTGGAAGA < 41bp 0.847630298856968 0.592256293994157 0.73318744 0.19330218 prediction 0.510748009725621 Functional Loss - GBP1P1 ENSG00000225492 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:89889959 chr1:89889961 . . 0 23 hm5C_associated_SNPs_63599 0 0 1 2 89889947 89889966 mRNA hsa-miR-504 LOC400759 miRanda miRanda
5565 chr1 67666558 67666558 1 + G T STAD 67666556 + 67666536 67666576 41 GCATGGAAGAGTCAAAACAACTGCAAATTCACCTGGATGAT GCATGGAAGAGTCAAAACAACTTCAAATTCACCTGGATGAT < 41bp 0.755350165905582 0.491210908026308 0.38408804 0.053148568 prediction 0.510700331811164 Functional Loss - IL23R ENSG00000162594 CDS Human protein_coding chr1:67666556 chr1:67666558 synonymous SNV . 0 23 hm5C_associated_SNPs_63609 0 0 0 2 67666550 67666571 mRNA hsa-miR-125a-3p IL23R miRanda miRanda
5566 chr1 67666558 67666558 1 + G T STAD 67666556 + 67666536 67666576 41 GCATGGAAGAGTCAAAACAACTGCAAATTCACCTGGATGAT GCATGGAAGAGTCAAAACAACTTCAAATTCACCTGGATGAT < 41bp 0.755350165905582 0.491210908026308 0.38408804 0.053148568 prediction 0.510700331811164 Functional Loss - IL23R ENSG00000162594 CDS Human protein_coding chr1:67666556 chr1:67666558 synonymous SNV . 0 23 hm5C_associated_SNPs_63609 0 0 0 2 67666538 67666559 mRNA hsa-miR-382 IL23R miRanda miRanda
5567 chr4 108955681 108955681 1 + A T rs532458283 108955677 + 108955657 108955697 41 AGTGATTATTACACCAGTTACAGCAGTAATAGATTCTCCAT AGTGATTATTACACCAGTTACAGCTGTAATAGATTCTCCAT < 41bp 0.755327058850447 0.46576388710058 0.5791215 0.28117323 prediction 0.510654117700893 Functional Loss - HADH ENSG00000138796 UTR3 Human protein_coding chr4:108955677 chr4:108955681 . . 0 25 hm5C_associated_SNPs_63619 0 0 1 1 108955662 108955684 mRNA hsa-miR-370 HADH miRanda miRanda
5568 chr1 849528 849528 1 + G T rs537480600 849525 + 849505 849545 41 GGTCCTGGAGAAGGAAGAACCAGGTGGCCCACCTTCGGTGC GGTCCTGGAGAAGGAAGAACCAGTTGGCCCACCTTCGGTGC < 41bp 0.892852608905602 0.637637769548952 0.90634966 0.24060503 prediction 0.510429678713301 Functional Loss - FAM41C;LOC100130417 ENSG00000230699 ncRNA_exonic Human lincRNA chr1:849525 chr1:849528 . . 0 24 hm5C_associated_SNPs_63655 0 0 0 2 849521 849538 lncRNA hsa-miR-541-3p AL645608.3 miRanda starBase2
5569 chr1 849528 849528 1 + G T rs537480600 849525 + 849505 849545 41 GGTCCTGGAGAAGGAAGAACCAGGTGGCCCACCTTCGGTGC GGTCCTGGAGAAGGAAGAACCAGTTGGCCCACCTTCGGTGC < 41bp 0.892852608905602 0.637637769548952 0.90634966 0.24060503 prediction 0.510429678713301 Functional Loss - FAM41C;LOC100130417 ENSG00000230699 ncRNA_exonic Human lincRNA chr1:849525 chr1:849528 . . 0 24 hm5C_associated_SNPs_63655 0 0 0 2 849517 849538 lncRNA hsa-miR-654-5p AL645608.3 miRanda starBase2
5570 chr1 100960422 100960422 1 + G T LUAD 100960419 + 100960399 100960439 41 AAATGAAAAATGGTATAACCCAGGGAGACAAACTACGTGCC AAATGAAAAATGGTATAACCCAGTGAGACAAACTACGTGCC < 41bp 0.755155177306824 0.388205729370811 0.92777264 0.88810027 prediction 0.510310354613648 Functional Loss - CDC14A ENSG00000079335 CDS Human protein_coding chr1:100960419 chr1:100960422 stopgain 0.995 1 24 hm5C_associated_SNPs_63669 0 0 1 1 100960422 100960442 mRNA hsa-miR-506 CDC14A miRanda miRanda
5571 chr2 157406137 157406137 1 + C T BLCA 157406135 + 157406115 157406155 41 TGCAGGACAACATAACGATGCACGGATGAACCTTGCCATTG TGCAGGACAACATAACGATGCATGGATGAACCTTGCCATTG < 41bp 0.77143616519133 0.516522425722086 0.1262773 0.17628244 prediction 0.509827478938487 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157406135 chr2:157406137 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_63731 0 0 1 1 157406126 157406148 mRNA hsa-miR-154 GPD2 miRanda miRanda
5572 chr7 5334518 5334518 1 + C T UCEC 5334516 + 5334496 5334536 41 CAATCCAGCTTCTACGGGTACACGGGGATGCTGCCCAAGCG CAATCCAGCTTCTACGGGTACATGGGGATGCTGCCCAAGCG < 41bp 0.772312208404276 0.517571867935158 0.1928249 0.3717034 prediction 0.509480680938236 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5334516 chr7:5334518 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_63801 0 0 0 1 5334507 5334527 mRNA hsa-miR-324-5p SLC29A4 miRanda miRanda
5573 chr1 148932825 148932825 1 + A T LUSC 148932821 + 148932801 148932841 41 CCCAAGCTAGCCCGCCAGGCCTCCATAGAGCTGCCCAGCAT CCCAAGCTAGCCCGCCAGGCCTCCTTAGAGCTGCCCAGCAT < 41bp 0.873169819173872 0.61852168784611 0.9577625 0.046655357 prediction 0.509296262655523 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932821 chr1:148932825 . . 0 25 hm5C_associated_SNPs_63835 0 0 1 2 148932823 148932848 mRNA hsa-miR-103 LOC645166 miRanda miRanda
5574 chr1 148932825 148932825 1 + A T LUSC 148932821 + 148932801 148932841 41 CCCAAGCTAGCCCGCCAGGCCTCCATAGAGCTGCCCAGCAT CCCAAGCTAGCCCGCCAGGCCTCCTTAGAGCTGCCCAGCAT < 41bp 0.873169819173872 0.61852168784611 0.9577625 0.046655357 prediction 0.509296262655523 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932821 chr1:148932825 . . 0 25 hm5C_associated_SNPs_63835 0 0 1 2 148932823 148932848 mRNA hsa-miR-107 LOC645166 miRanda miRanda
5575 chr10 75676154 75676154 1 + C T HNSC 75676152 + 75676132 75676172 41 TCTTTGGCGTCACAGGGAGACTCAGGGGGACCCCTCGTCTG TCTTTGGCGTCACAGGGAGACTTAGGGGGACCCCTCGTCTG < 41bp 0.771602787659463 0.51706789748261 0.56221884 0.79153335 prediction 0.509069780353706 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75676152 chr10:75676154 nonsynonymous SNV 0.286 5 23 hm5C_associated_SNPs_63866 0 0 0 2 75676147 75676159 mRNA hsa-miR-125b PLAU miRanda miRanda
5576 chr10 75676154 75676154 1 + C T HNSC 75676152 + 75676132 75676172 41 TCTTTGGCGTCACAGGGAGACTCAGGGGGACCCCTCGTCTG TCTTTGGCGTCACAGGGAGACTTAGGGGGACCCCTCGTCTG < 41bp 0.771602787659463 0.51706789748261 0.56221884 0.79153335 prediction 0.509069780353706 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75676152 chr10:75676154 nonsynonymous SNV 0.286 5 23 hm5C_associated_SNPs_63866 0 0 0 2 75676147 75676159 mRNA hsa-miR-125a-5p PLAU miRanda miRanda
5577 chr2 149226227 149226227 1 + C T SKCM 149226225 + 149226205 149226245 41 ATATGGAGATGGTTCAATCTCTCCAAGGACTGACCCACTTG ATATGGAGATGGTTCAATCTCTTCAAGGACTGACCCACTTG < 41bp 0.822185980545219 0.567699847577281 0.9640703 0.29924995 prediction 0.508972265935876 Functional Loss - MBD5 ENSG00000204406 CDS Human protein_coding chr2:149226225 chr2:149226227 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_63885 0 0 0 1 149226206 149226229 mRNA hsa-miR-185 MBD5 miRanda miRanda
5578 chr12 2929267 2929267 1 + G C LUSC 2929266 + 2929246 2929286 41 CCACAGATGGAGATGGGTGTCGTGAGCTGGTGGTGGGCTAC CCACAGATGGAGATGGGTGTCCTGAGCTGGTGGTGGGCTAC < 41bp 0.857939305547085 0.603506122459356 0.467168 0.288263 prediction 0.508866366175458 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2929266 chr12:2929267 nonsynonymous SNV 0.684 1 22 hm5C_associated_SNPs_63901 0 0 1 1 2929252 2929272 mRNA hsa-miR-342-3p ITFG2 miRanda miRanda
5579 chr18 48575104 48575104 1 + A T LUAD 48575100 + 48575080 48575120 41 CATGTGATCTATGCCCGTCTCTGGAGGTGGCCTGATCTTCA CATGTGATCTATGCCCGTCTCTGGTGGTGGCCTGATCTTCA < 41bp 0.754308487133326 0.447059977652628 0.3559867 0.16103607 prediction 0.508616974266653 Functional Loss - SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48575100 chr18:48575104 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_63940 0 0 1 1 48575103 48575124 mRNA hsa-miR-758 SMAD4 miRanda miRanda
5580 chr6 126359958 126359958 1 + G T UCEC 126359955 + 126359935 126359975 41 GGGGTAACAAAAAGAATTGCCAAGGAAGAAAAATCCACCCA GGGGTAACAAAAAGAATTGCCAATGAAGAAAAATCCACCCA < 41bp 0.754042260822967 0.385181980665758 0.37569007 0.063192695 prediction 0.508084521645933 Functional Loss - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126359955 chr6:126359958 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_64014 0 0 1 1 126359935 126359958 mRNA hsa-miR-182 TRMT11 miRanda miRanda
5581 chr19 53879149 53879149 1 + G T LUSC 53879146 + 53879126 53879166 41 ATTATAGGAACCTGGTCTCCCTGGGTGAGGATAACTTCCCT ATTATAGGAACCTGGTCTCCCTGTGTGAGGATAACTTCCCT < 41bp 0.839087155543489 0.585074534425739 0.3794741 0.08651587 prediction 0.5080252422355 Functional Loss - ZNF525 ENSG00000203326 CDS Human protein_coding chr19:53879146 chr19:53879149 stopgain 0.293 1 24 hm5C_associated_SNPs_64021 0 0 0 2 53879144 53879149 mRNA hsa-miR-376a ZNF525 miRanda miRanda
5582 chr19 53879149 53879149 1 + G T LUSC 53879146 + 53879126 53879166 41 ATTATAGGAACCTGGTCTCCCTGGGTGAGGATAACTTCCCT ATTATAGGAACCTGGTCTCCCTGTGTGAGGATAACTTCCCT < 41bp 0.839087155543489 0.585074534425739 0.3794741 0.08651587 prediction 0.5080252422355 Functional Loss - ZNF525 ENSG00000203326 CDS Human protein_coding chr19:53879146 chr19:53879149 stopgain 0.293 1 24 hm5C_associated_SNPs_64021 0 0 0 2 53879143 53879149 mRNA hsa-miR-376b ZNF525 miRanda miRanda
5583 chr1 166990920 166990920 1 + G T LUAD 166990917 + 166990897 166990937 41 TATCCTAGGTGACTACCCATCTAGGGCAAAAATTTCTGGCC TATCCTAGGTGACTACCCATCTATGGCAAAAATTTCTGGCC < 41bp 0.753965439247554 0.376061440505773 0.882192 0.4002894 prediction 0.507930878495109 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166990917 chr1:166990920 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_64031 0 0 0 1 166990911 166990929 mRNA hsa-miR-129-5p MAEL miRanda miRanda
5584 chr13 28239969 28239969 1 + C T UCEC 28239967 + 28239947 28239987 41 CAGGCCCAGAAAGAAGAAAACCCGAAGAAACACAGAAGCCA CAGGCCCAGAAAGAAGAAAACCTGAAGAAACACAGAAGCCA < 41bp 0.757277588990257 0.50336639067736 0.1467869 0.0643968 prediction 0.507822396625794 Functional Loss - POLR1D ENSG00000186184 CDS Human protein_coding chr13:28239967 chr13:28239969 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_64044 0 0 1 2 28239966 28239989 mRNA hsa-miR-135a POLR1D miRanda miRanda
5585 chr13 28239969 28239969 1 + C T UCEC 28239967 + 28239947 28239987 41 CAGGCCCAGAAAGAAGAAAACCCGAAGAAACACAGAAGCCA CAGGCCCAGAAAGAAGAAAACCTGAAGAAACACAGAAGCCA < 41bp 0.757277588990257 0.50336639067736 0.1467869 0.0643968 prediction 0.507822396625794 Functional Loss - POLR1D ENSG00000186184 CDS Human protein_coding chr13:28239967 chr13:28239969 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_64044 0 0 1 2 28239966 28239989 mRNA hsa-miR-135b POLR1D miRanda miRanda
5586 chr16 90102839 90102839 1 + G T LUAD 90102836 + 90102816 90102856 41 TGAAGATGCTGAGGGACGAACTCGACTTGCGGAGAAAGACT TGAAGATGCTGAGGGACGAACTCTACTTGCGGAGAAAGACT < 41bp 0.753881462314491 0.369960579554182 0.8920766 0.47694197 prediction 0.507762924628983 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90102836 chr16:90102839 nonsynonymous SNV 0.963 4 24 hm5C_associated_SNPs_64052 0 0 1 1 90102820 90102842 mRNA hsa-miR-223 GAS8 miRanda miRanda
5587 chr19 54606463 54606463 1 + G T UCEC 54606461 + 54606441 54606481 41 GAATGCCTGGGACAAGGAGCCAGTGCTGGTCGTGTCCTTCG GAATGCCTGGGACAAGGAGCCATTGCTGGTCGTGTCCTTCG < 41bp 0.753798272391418 0.404242041237106 0.44755733 0.22871816 prediction 0.507596544782836 Functional Loss - NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54606461 chr19:54606463 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_64083 0 0 1 1 54606442 54606464 mRNA hsa-miR-149 NDUFA3 miRanda miRanda
5588 chr20 29628283 29628283 1 + G C BLCA 29628279 + 29628259 29628299 41 CTTTATTAGATGCAATGAAGCAGGGGACATAGAAGCAAAAA CTTTATTAGATGCAATGAAGCAGGCGACATAGAAGCAAAAA < 41bp 0.753787855441794 0.481155453495947 0.92015815 0.8621941 prediction 0.507575710883589 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29628279 chr20:29628283 synonymous SNV . 0 25 hm5C_associated_SNPs_64086 0 0 0 1 29628281 29628300 mRNA hsa-miR-129-5p FRG1B miRanda miRanda
5589 chr2 70015273 70015273 1 + G T LUSC 70015270 + 70015250 70015290 41 TGAGGAAGGCCATGAAAGGGCTCGGTATGTGTCCTGCTGGA TGAGGAAGGCCATGAAAGGGCTCTGTATGTGTCCTGCTGGA < 41bp 0.753739738058698 0.37216990297474 0.13584256 0.08235678 prediction 0.507479476117397 Functional Loss - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70015270 chr2:70015273 nonsynonymous SNV 0.112 4 24 hm5C_associated_SNPs_64100 0 0 1 1 70015249 70015273 mRNA hsa-miR-615-3p ANXA4 miRanda miRanda
5590 chr17 63149573 63149573 1 + G T UCEC 63149571 + 63149551 63149591 41 CGTGAAGGACATGCAGAACCCAGAGACAGGGGTCCGAATGC CGTGAAGGACATGCAGAACCCATAGACAGGGGTCCGAATGC < 41bp 0.75351701086545 0.397793158008083 0.73692507 0.019542307 prediction 0.5070340217309 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63149571 chr17:63149573 stopgain 0.969 1 23 hm5C_associated_SNPs_64159 0 0 0 3 63149552 63149576 mRNA hsa-miR-330-5p RGS9 miRanda miRanda
5591 chr17 63149573 63149573 1 + G T UCEC 63149571 + 63149551 63149591 41 CGTGAAGGACATGCAGAACCCAGAGACAGGGGTCCGAATGC CGTGAAGGACATGCAGAACCCATAGACAGGGGTCCGAATGC < 41bp 0.75351701086545 0.397793158008083 0.73692507 0.019542307 prediction 0.5070340217309 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63149571 chr17:63149573 stopgain 0.969 1 23 hm5C_associated_SNPs_64159 0 0 0 3 63149557 63149576 mRNA hsa-miR-326 RGS9 miRanda miRanda
5592 chr17 63149573 63149573 1 + G T UCEC 63149571 + 63149551 63149591 41 CGTGAAGGACATGCAGAACCCAGAGACAGGGGTCCGAATGC CGTGAAGGACATGCAGAACCCATAGACAGGGGTCCGAATGC < 41bp 0.75351701086545 0.397793158008083 0.73692507 0.019542307 prediction 0.5070340217309 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63149571 chr17:63149573 stopgain 0.969 1 23 hm5C_associated_SNPs_64159 0 0 0 3 63149560 63149582 mRNA hsa-miR-339-5p RGS9 miRanda miRanda
5593 chr7 30411222 30411222 1 + G C rs189447786 30411218 + 30411198 30411238 41 CTGTCCAAGATTGAAGAACTCCAGGGTCAACTGCAATATAA CTGTCCAAGATTGAAGAACTCCAGCGTCAACTGCAATATAA < 41bp 0.753248832363025 0.486062565248651 0.7647152 0.22516924 prediction 0.506497664726049 Functional Loss - DKFZP586I1420 ENSG00000235859 ncRNA_exonic Human processed_pseudogene chr7:30411218 chr7:30411222 . . 0 25 hm5C_associated_SNPs_64235 0 0 1 2 30411201 30411224 mRNA hsa-miR-125a-5p DKFZP586I1420 miRanda miRanda
5594 chr7 30411222 30411222 1 + G C rs189447786 30411218 + 30411198 30411238 41 CTGTCCAAGATTGAAGAACTCCAGGGTCAACTGCAATATAA CTGTCCAAGATTGAAGAACTCCAGCGTCAACTGCAATATAA < 41bp 0.753248832363025 0.486062565248651 0.7647152 0.22516924 prediction 0.506497664726049 Functional Loss - DKFZP586I1420 ENSG00000235859 ncRNA_exonic Human processed_pseudogene chr7:30411218 chr7:30411222 . . 0 25 hm5C_associated_SNPs_64235 0 0 1 2 30411202 30411226 mRNA hsa-miR-504 DKFZP586I1420 miRanda miRanda
5595 chr10 71021022 71021022 1 + G C LUSC 71021021 + 71021001 71021041 41 CTCCGGACCAGGGGCATCTTCGAAACCAAGTTCCTGTCCCA CTCCGGACCAGGGGCATCTTCCAAACCAAGTTCCTGTCCCA < 41bp 0.753167962217121 0.433032692236048 0.84462285 0.8569573 prediction 0.506335924434243 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71021021 chr10:71021022 nonsynonymous SNV 0.939 2 22 hm5C_associated_SNPs_64265 0 0 0 1 71021017 71021037 mRNA hsa-miR-873 HKDC1 miRanda miRanda
5596 chr1 151263661 151263661 1 + G T SARC 151263659 + 151263639 151263679 41 GCATGGCGTTCATCAGGGCTCGGCAGGGGGCTGTTGGGGAC GCATGGCGTTCATCAGGGCTCGTCAGGGGGCTGTTGGGGAC < 41bp 0.869556610585527 0.616481823913198 0.8766266 0.74468726 prediction 0.506149573344658 Functional Loss - ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151263659 chr1:151263661 synonymous SNV . 0 23 hm5C_associated_SNPs_64294 0 0 1 1 151263641 151263662 mRNA hsa-miR-615-3p ZNF687 miRanda miRanda
5597 chr5 7875450 7875450 1 + G T LUAD 7875448 + 7875428 7875468 41 GACTTCAAGAGCTTGGAGCCCGGCATTTCTATGACACTGGA GACTTCAAGAGCTTGGAGCCCGTCATTTCTATGACACTGGA < 41bp 0.871704939912212 0.618678567722043 0.16310084 0.027127355 prediction 0.506052744380338 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7875448 chr5:7875450 synonymous SNV . 0 23 hm5C_associated_SNPs_64311 0 0 1 4 7875444 7875468 mRNA hsa-miR-199a-5p MTRR miRanda miRanda
5598 chr5 7875450 7875450 1 + G T LUAD 7875448 + 7875428 7875468 41 GACTTCAAGAGCTTGGAGCCCGGCATTTCTATGACACTGGA GACTTCAAGAGCTTGGAGCCCGTCATTTCTATGACACTGGA < 41bp 0.871704939912212 0.618678567722043 0.16310084 0.027127355 prediction 0.506052744380338 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7875448 chr5:7875450 synonymous SNV . 0 23 hm5C_associated_SNPs_64311 0 0 1 4 7875445 7875468 mRNA hsa-miR-199b-5p MTRR miRanda miRanda
5599 chr5 7875450 7875450 1 + G T LUAD 7875448 + 7875428 7875468 41 GACTTCAAGAGCTTGGAGCCCGGCATTTCTATGACACTGGA GACTTCAAGAGCTTGGAGCCCGTCATTTCTATGACACTGGA < 41bp 0.871704939912212 0.618678567722043 0.16310084 0.027127355 prediction 0.506052744380338 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7875448 chr5:7875450 synonymous SNV . 0 23 hm5C_associated_SNPs_64311 0 0 1 4 7875442 7875462 mRNA hsa-miR-376a MTRR miRanda miRanda
5600 chr5 7875450 7875450 1 + G T LUAD 7875448 + 7875428 7875468 41 GACTTCAAGAGCTTGGAGCCCGGCATTTCTATGACACTGGA GACTTCAAGAGCTTGGAGCCCGTCATTTCTATGACACTGGA < 41bp 0.871704939912212 0.618678567722043 0.16310084 0.027127355 prediction 0.506052744380338 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7875448 chr5:7875450 synonymous SNV . 0 23 hm5C_associated_SNPs_64311 0 0 1 4 7875441 7875462 mRNA hsa-miR-376b MTRR miRanda miRanda
5601 chr1 54360057 54360057 1 + C T UCEC 54360055 + 54360035 54360075 41 CCAGGAACCCCCATTTCAGCCACGACAACTGGATACCAACC CCAGGAACCCCCATTTCAGCCATGACAACTGGATACCAACC < 41bp 0.759558686939739 0.506552669149649 0.018562287 0.022675753 prediction 0.50601203558018 Functional Loss - DIO1 ENSG00000211452 CDS Human protein_coding chr1:54360055 chr1:54360057 synonymous SNV . 0 23 hm5C_associated_SNPs_64320 0 0 0 1 54360043 54360068 mRNA hsa-miR-145 DIO1 miRanda miRanda
5602 chr13 113882348 113882348 1 + T C UCEC 113882347 + 113882327 113882367 41 AACACGTGCTGGCAGGACCACTGCAGACAAATGGTAAGCTT AACACGTGCTGGCAGGACCACCGCAGACAAATGGTAAGCTT < 41bp 0.755737854886766 0.502882603156025 0.33311325 0.09790522 prediction 0.505710503461481 Functional Loss - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113882347 chr13:113882348 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_64362 0 0 1 1 113882344 113882359 mRNA hsa-miR-433 CUL4A miRanda miRanda
5603 chr6 109627314 109627314 1 + A C rs182173935 109627310 + 109627290 109627330 41 AGCCACTGGATCCACGGAGCCTCCAGGTGTGTTTCAGATGT AGCCACTGGATCCACGGAGCCTCCCGGTGTGTTTCAGATGT < 41bp 0.752825096122894 0.354331344975697 0.9416012 0.045478106 prediction 0.505650192245787 Functional Loss - CCDC162P ENSG00000203799 ncRNA_exonic Human transcribed_unitary_pseudogene chr6:109627310 chr6:109627314 . . 0 25 hm5C_associated_SNPs_64376 0 0 1 1 109627309 109627315 mRNA hsa-miR-132 CCDC162 miRanda miRanda
5604 chr12 95676227 95676227 1 + C T BLCA 95676225 + 95676205 95676245 41 TCGTATCTTATCTGATGTGACTCAAGGTCTACCTCATGCTC TCGTATCTTATCTGATGTGACTTAAGGTCTACCTCATGCTC < 41bp 0.752568423044843 0.47286225431729 0.3276893 0.13871491 prediction 0.505136846089685 Functional Loss - VEZT ENSG00000028203 CDS Human protein_coding chr12:95676225 chr12:95676227 stopgain 0.997 1 23 hm5C_associated_SNPs_64455 0 0 1 10 95676214 95676240 mRNA hsa-let-7a VEZT miRanda miRanda
5605 chr12 95676227 95676227 1 + C T BLCA 95676225 + 95676205 95676245 41 TCGTATCTTATCTGATGTGACTCAAGGTCTACCTCATGCTC TCGTATCTTATCTGATGTGACTTAAGGTCTACCTCATGCTC < 41bp 0.752568423044843 0.47286225431729 0.3276893 0.13871491 prediction 0.505136846089685 Functional Loss - VEZT ENSG00000028203 CDS Human protein_coding chr12:95676225 chr12:95676227 stopgain 0.997 1 23 hm5C_associated_SNPs_64455 0 0 1 10 95676220 95676240 mRNA hsa-let-7b VEZT miRanda miRanda
5606 chr12 95676227 95676227 1 + C T BLCA 95676225 + 95676205 95676245 41 TCGTATCTTATCTGATGTGACTCAAGGTCTACCTCATGCTC TCGTATCTTATCTGATGTGACTTAAGGTCTACCTCATGCTC < 41bp 0.752568423044843 0.47286225431729 0.3276893 0.13871491 prediction 0.505136846089685 Functional Loss - VEZT ENSG00000028203 CDS Human protein_coding chr12:95676225 chr12:95676227 stopgain 0.997 1 23 hm5C_associated_SNPs_64455 0 0 1 10 95676215 95676240 mRNA hsa-let-7c VEZT miRanda miRanda
5607 chr12 95676227 95676227 1 + C T BLCA 95676225 + 95676205 95676245 41 TCGTATCTTATCTGATGTGACTCAAGGTCTACCTCATGCTC TCGTATCTTATCTGATGTGACTTAAGGTCTACCTCATGCTC < 41bp 0.752568423044843 0.47286225431729 0.3276893 0.13871491 prediction 0.505136846089685 Functional Loss - VEZT ENSG00000028203 CDS Human protein_coding chr12:95676225 chr12:95676227 stopgain 0.997 1 23 hm5C_associated_SNPs_64455 0 0 1 10 95676214 95676240 mRNA hsa-let-7d VEZT miRanda miRanda
5608 chr12 95676227 95676227 1 + C T BLCA 95676225 + 95676205 95676245 41 TCGTATCTTATCTGATGTGACTCAAGGTCTACCTCATGCTC TCGTATCTTATCTGATGTGACTTAAGGTCTACCTCATGCTC < 41bp 0.752568423044843 0.47286225431729 0.3276893 0.13871491 prediction 0.505136846089685 Functional Loss - VEZT ENSG00000028203 CDS Human protein_coding chr12:95676225 chr12:95676227 stopgain 0.997 1 23 hm5C_associated_SNPs_64455 0 0 1 10 95676220 95676240 mRNA hsa-let-7e VEZT miRanda miRanda
5609 chr12 95676227 95676227 1 + C T BLCA 95676225 + 95676205 95676245 41 TCGTATCTTATCTGATGTGACTCAAGGTCTACCTCATGCTC TCGTATCTTATCTGATGTGACTTAAGGTCTACCTCATGCTC < 41bp 0.752568423044843 0.47286225431729 0.3276893 0.13871491 prediction 0.505136846089685 Functional Loss - VEZT ENSG00000028203 CDS Human protein_coding chr12:95676225 chr12:95676227 stopgain 0.997 1 23 hm5C_associated_SNPs_64455 0 0 1 10 95676214 95676240 mRNA hsa-let-7f VEZT miRanda miRanda
5610 chr12 95676227 95676227 1 + C T BLCA 95676225 + 95676205 95676245 41 TCGTATCTTATCTGATGTGACTCAAGGTCTACCTCATGCTC TCGTATCTTATCTGATGTGACTTAAGGTCTACCTCATGCTC < 41bp 0.752568423044843 0.47286225431729 0.3276893 0.13871491 prediction 0.505136846089685 Functional Loss - VEZT ENSG00000028203 CDS Human protein_coding chr12:95676225 chr12:95676227 stopgain 0.997 1 23 hm5C_associated_SNPs_64455 0 0 1 10 95676215 95676240 mRNA hsa-miR-98 VEZT miRanda miRanda
5611 chr12 95676227 95676227 1 + C T BLCA 95676225 + 95676205 95676245 41 TCGTATCTTATCTGATGTGACTCAAGGTCTACCTCATGCTC TCGTATCTTATCTGATGTGACTTAAGGTCTACCTCATGCTC < 41bp 0.752568423044843 0.47286225431729 0.3276893 0.13871491 prediction 0.505136846089685 Functional Loss - VEZT ENSG00000028203 CDS Human protein_coding chr12:95676225 chr12:95676227 stopgain 0.997 1 23 hm5C_associated_SNPs_64455 0 0 1 10 95676220 95676240 mRNA hsa-let-7g VEZT miRanda miRanda
5612 chr12 95676227 95676227 1 + C T BLCA 95676225 + 95676205 95676245 41 TCGTATCTTATCTGATGTGACTCAAGGTCTACCTCATGCTC TCGTATCTTATCTGATGTGACTTAAGGTCTACCTCATGCTC < 41bp 0.752568423044843 0.47286225431729 0.3276893 0.13871491 prediction 0.505136846089685 Functional Loss - VEZT ENSG00000028203 CDS Human protein_coding chr12:95676225 chr12:95676227 stopgain 0.997 1 23 hm5C_associated_SNPs_64455 0 0 1 10 95676220 95676240 mRNA hsa-let-7i VEZT miRanda miRanda
5613 chr12 95676227 95676227 1 + C T BLCA 95676225 + 95676205 95676245 41 TCGTATCTTATCTGATGTGACTCAAGGTCTACCTCATGCTC TCGTATCTTATCTGATGTGACTTAAGGTCTACCTCATGCTC < 41bp 0.752568423044843 0.47286225431729 0.3276893 0.13871491 prediction 0.505136846089685 Functional Loss - VEZT ENSG00000028203 CDS Human protein_coding chr12:95676225 chr12:95676227 stopgain 0.997 1 23 hm5C_associated_SNPs_64455 0 0 1 10 95676218 95676238 mRNA hsa-miR-379 VEZT miRanda miRanda
5614 chr9 107550757 107550757 1 + C T COAD 107550755 + 107550735 107550775 41 CTCAAAAGGGCAAAGAACTCCACGTGTTCTCTCCCAGTCAA CTCAAAAGGGCAAAGAACTCCATGTGTTCTCTCCCAGTCAA < 41bp 0.752444284708351 0.489209835919093 0.12845463 0.121377945 prediction 0.504888569416702 Functional Loss - ABCA1 ENSG00000165029 CDS Human protein_coding chr9:107550755 chr9:107550757 nonsynonymous SNV 0.959 3 23 hm5C_associated_SNPs_64481 0 0 0 1 107550745 107550769 mRNA hsa-miR-185 NIPSNAP3B miRanda miRanda
5615 chr10 95552960 95552960 1 + G T UCEC 95552957 + 95552937 95552977 41 TTGCAGAATTTGCAAAGTCTCAAGACCTGCCTTATCAATCA TTGCAGAATTTGCAAAGTCTCAATACCTGCCTTATCAATCA < 41bp 0.752333042279569 0.385958652632274 0.3594675 0.06355688 prediction 0.504666084559137 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95552957 chr10:95552960 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_64514 0 0 0 3 95552951 95552970 mRNA hsa-miR-124 LGI1 miRanda miRanda
5616 chr10 95552960 95552960 1 + G T UCEC 95552957 + 95552937 95552977 41 TTGCAGAATTTGCAAAGTCTCAAGACCTGCCTTATCAATCA TTGCAGAATTTGCAAAGTCTCAATACCTGCCTTATCAATCA < 41bp 0.752333042279569 0.385958652632274 0.3594675 0.06355688 prediction 0.504666084559137 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95552957 chr10:95552960 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_64514 0 0 0 3 95552954 95552974 mRNA hsa-miR-488 LGI1 miRanda miRanda
5617 chr10 95552960 95552960 1 + G T UCEC 95552957 + 95552937 95552977 41 TTGCAGAATTTGCAAAGTCTCAAGACCTGCCTTATCAATCA TTGCAGAATTTGCAAAGTCTCAATACCTGCCTTATCAATCA < 41bp 0.752333042279569 0.385958652632274 0.3594675 0.06355688 prediction 0.504666084559137 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95552957 chr10:95552960 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_64514 0 0 0 3 95552950 95552970 mRNA hsa-miR-506 LGI1 miRanda miRanda
5618 chr14 62547653 62547653 1 + G T COAD 62547651 + 62547631 62547671 41 TTGAATATAGAGCCGCCAGCCAGAAGCTCACAGTGACCATT TTGAATATAGAGCCGCCAGCCATAAGCTCACAGTGACCATT < 41bp 0.752326906838185 0.401919225985388 0.42735824 0.18351373 prediction 0.504653813676371 Functional Loss - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62547651 chr14:62547653 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_64517 0 0 0 1 62547650 62547671 mRNA hsa-miR-183 SYT16 miRanda miRanda
5619 chr7 128315858 128315858 1 + G T ACC 128315855 + 128315835 128315875 41 TGGCCAATGTTACCTGGCCCCAGGGTCCATTTACCACCTGG TGGCCAATGTTACCTGGCCCCAGTGTCCATTTACCACCTGG < 41bp 0.918460617894912 0.666238121238575 0.789245 0.048312902 prediction 0.504444993312673 Functional Loss - FAM71F2 ENSG00000205085 CDS Human protein_coding chr7:128315855 chr7:128315858 nonsynonymous SNV 0.124 2 24 hm5C_associated_SNPs_64552 0 0 0 1 128315841 128315862 mRNA hsa-miR-504 FAM71F2 miRanda miRanda
5620 chr6 135518126 135518126 1 + A T LUSC 135518122 + 135518102 135518142 41 TCTTCATCATGGTGTGATCTCAGCAGTTTTGAATTCTTTGA TCTTCATCATGGTGTGATCTCAGCTGTTTTGAATTCTTTGA < 41bp 0.763129013287996 0.511220868953815 0.35637164 0.3140592 prediction 0.503816288668361 Functional Loss - MYB ENSG00000118513 CDS Human protein_coding chr6:135518122 chr6:135518126 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_64646 0 0 0 1 135518118 135518141 mRNA hsa-miR-186 MYB miRanda miRanda
5621 chr20 2637071 2637071 1 + T C rs8958 2637070 + 2637050 2637090 41 CCTGAAGACAAGGGGTAACACTCCAAAATATGGACTCATTT CCTGAAGACAAGGGGTAACACCCCAAAATATGGACTCATTT < 41bp 0.751889459589601 0.489989876594169 0.97541124 0.054619998 prediction 0.503778919179203 Functional Loss - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2637070 chr20:2637071 synonymous SNV . 0 22 hm5C_associated_SNPs_64653 1 0 1 1 2637052 2637074 mRNA hsa-miR-122 NOP56 miRanda miRanda
5622 chr14 68200619 68200619 1 + G C rs535737403 68200615 + 68200595 68200635 41 CCAATCCATGCCATAATGAACAGGGACCAAGGAGAAGGCCA CCAATCCATGCCATAATGAACAGGCACCAAGGAGAAGGCCA < 41bp 0.75179746092376 0.492031994913254 0.8373203 0.28306383 prediction 0.50359492184752 Functional Loss - RDH12 ENSG00000139988 UTR3 Human protein_coding chr14:68200615 chr14:68200619 . . 0 25 hm5C_associated_SNPs_64688 1 0 0 2 68200603 68200625 mRNA hsa-miR-133a RDH12 miRanda miRanda
5623 chr14 68200619 68200619 1 + G C rs535737403 68200615 + 68200595 68200635 41 CCAATCCATGCCATAATGAACAGGGACCAAGGAGAAGGCCA CCAATCCATGCCATAATGAACAGGCACCAAGGAGAAGGCCA < 41bp 0.75179746092376 0.492031994913254 0.8373203 0.28306383 prediction 0.50359492184752 Functional Loss - RDH12 ENSG00000139988 UTR3 Human protein_coding chr14:68200615 chr14:68200619 . . 0 25 hm5C_associated_SNPs_64688 1 0 0 2 68200603 68200625 mRNA hsa-miR-133b RDH12 miRanda miRanda
5624 chr22 32257396 32257396 1 + G T SARC 32257394 + 32257374 32257414 41 GTTTGTCCGCAGCCCACGCACAGCATCGTCCGCCTTCTACC GTTTGTCCGCAGCCCACGCACATCATCGTCCGCCTTCTACC < 41bp 0.751656846813796 0.429924728749854 0.23826206 0.11097869 prediction 0.503313693627591 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32257394 chr22:32257396 nonsynonymous SNV 0.965 0 23 hm5C_associated_SNPs_64727 0 0 0 1 32257396 32257418 mRNA hsa-let-7e DEPDC5 miRanda miRanda
5625 chr15 25456783 25456783 1 + G T BLCA 25456781 + 25456761 25456801 41 GCCTGAAGGAAGACTTGCATCAGGACCAATGGACCCTGGCA GCCTGAAGGAAGACTTGCATCATGACCAATGGACCCTGGCA < 41bp 0.871179849816318 0.619533313999514 0.90218353 0.19685242 prediction 0.503293071633609 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25456781 chr15:25456783 . . 0 23 hm5C_associated_SNPs_64730 0 0 0 2 25456768 25456790 mRNA hsa-miR-133a SNRPN miRanda miRanda
5626 chr15 25456783 25456783 1 + G T BLCA 25456781 + 25456761 25456801 41 GCCTGAAGGAAGACTTGCATCAGGACCAATGGACCCTGGCA GCCTGAAGGAAGACTTGCATCATGACCAATGGACCCTGGCA < 41bp 0.871179849816318 0.619533313999514 0.90218353 0.19685242 prediction 0.503293071633609 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25456781 chr15:25456783 . . 0 23 hm5C_associated_SNPs_64730 0 0 0 2 25456768 25456790 mRNA hsa-miR-133b SNRPN miRanda miRanda
5627 chrX 152772381 152772381 1 + G T COAD 152772379 + 152772359 152772399 41 CTTCGCTACTCCAAGCTGTACAGGTGAGGCCAGCAGGGCAC CTTCGCTACTCCAAGCTGTACATGTGAGGCCAGCAGGGCAC < 41bp 0.75149599621141 0.398549936773544 0.80456614 0.34149843 prediction 0.502991992422821 Functional Loss - BGN ENSG00000182492 CDS Human protein_coding chrX:152772379 chrX:152772381 nonsynonymous SNV 0.951 3 23 hm5C_associated_SNPs_64771 0 0 0 1 152772364 152772381 mRNA hsa-miR-486-5p BGN miRanda miRanda
5628 chr16 22588101 22588101 1 + G T UCEC 22588098 + 22588078 22588118 41 TGGGACACCGTTCCCTGGATCCAGACCCTCATCTAGGGCAG TGGGACACCGTTCCCTGGATCCATACCCTCATCTAGGGCAG < 41bp 0.75139315207494 0.400957190117962 0.56095326 0.20032275 prediction 0.502786304149881 Functional Loss - LOC653786 ENSG00000257838 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:22588098 chr16:22588101 . . 0 24 hm5C_associated_SNPs_64804 0 0 0 1 22588085 22588107 mRNA hsa-miR-296-3p LOC653786 miRanda miRanda
5629 chr11 35198159 35198159 1 + C T STAD 35198157 + 35198137 35198177 41 GCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGTCGC GCCGCTTTGCAGGTGTATTCCATGTGGAGAAAAATGGTCGC < 41bp 0.75134723149893 0.483355506519399 0.3870799 0.36388475 prediction 0.502694462997859 Functional Loss - CD44 ENSG00000026508 CDS Human protein_coding chr11:35198157 chr11:35198159 synonymous SNV . 0 23 hm5C_associated_SNPs_64819 0 0 1 1 35198155 35198179 mRNA hsa-miR-29b CD44 miRanda miRanda
5630 chr9 75309494 75309494 1 + C T UCEC 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTTGAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.462443624788756 0.3691743 0.1227141 prediction 0.50257977030966 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309494 stopgain 0.991 1 23 hm5C_associated_SNPs_64838 2 0 0 10 75309474 75309495 mRNA hsa-let-7a TMC1 miRanda miRanda
5631 chr9 75309494 75309494 1 + C T UCEC 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTTGAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.462443624788756 0.3691743 0.1227141 prediction 0.50257977030966 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309494 stopgain 0.991 1 23 hm5C_associated_SNPs_64838 2 0 0 10 75309474 75309495 mRNA hsa-let-7b TMC1 miRanda miRanda
5632 chr9 75309494 75309494 1 + C T UCEC 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTTGAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.462443624788756 0.3691743 0.1227141 prediction 0.50257977030966 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309494 stopgain 0.991 1 23 hm5C_associated_SNPs_64838 2 0 0 10 75309472 75309495 mRNA hsa-let-7c TMC1 miRanda miRanda
5633 chr9 75309494 75309494 1 + C T UCEC 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTTGAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.462443624788756 0.3691743 0.1227141 prediction 0.50257977030966 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309494 stopgain 0.991 1 23 hm5C_associated_SNPs_64838 2 0 0 10 75309472 75309495 mRNA hsa-let-7d TMC1 miRanda miRanda
5634 chr9 75309494 75309494 1 + C T UCEC 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTTGAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.462443624788756 0.3691743 0.1227141 prediction 0.50257977030966 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309494 stopgain 0.991 1 23 hm5C_associated_SNPs_64838 2 0 0 10 75309474 75309495 mRNA hsa-let-7e TMC1 miRanda miRanda
5635 chr9 75309494 75309494 1 + C T UCEC 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTTGAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.462443624788756 0.3691743 0.1227141 prediction 0.50257977030966 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309494 stopgain 0.991 1 23 hm5C_associated_SNPs_64838 2 0 0 10 75309474 75309495 mRNA hsa-let-7f TMC1 miRanda miRanda
5636 chr9 75309494 75309494 1 + C T UCEC 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTTGAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.462443624788756 0.3691743 0.1227141 prediction 0.50257977030966 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309494 stopgain 0.991 1 23 hm5C_associated_SNPs_64838 2 0 0 10 75309477 75309495 mRNA hsa-miR-98 TMC1 miRanda miRanda
5637 chr9 75309494 75309494 1 + C T UCEC 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTTGAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.462443624788756 0.3691743 0.1227141 prediction 0.50257977030966 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309494 stopgain 0.991 1 23 hm5C_associated_SNPs_64838 2 0 0 10 75309472 75309495 mRNA hsa-let-7g TMC1 miRanda miRanda
5638 chr9 75309494 75309494 1 + C T UCEC 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTTGAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.462443624788756 0.3691743 0.1227141 prediction 0.50257977030966 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309494 stopgain 0.991 1 23 hm5C_associated_SNPs_64838 2 0 0 10 75309472 75309495 mRNA hsa-let-7i TMC1 miRanda miRanda
5639 chr9 75309494 75309494 1 + C T UCEC 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTTGAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.462443624788756 0.3691743 0.1227141 prediction 0.50257977030966 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309494 stopgain 0.991 1 23 hm5C_associated_SNPs_64838 2 0 0 10 75309471 75309494 mRNA hsa-miR-708 TMC1 miRanda miRanda
5640 chr10 38305807 38305807 1 + G T UCEC 38305805 + 38305785 38305825 41 TCTGAATGTTTCAGGTAGAACAGAAGTCCCAGGAGTCAGTA TCTGAATGTTTCAGGTAGAACATAAGTCCCAGGAGTCAGTA < 41bp 0.75118632739602 0.443289794237215 0.075820655 0.037440956 prediction 0.502372654792039 Functional Loss - ZNF33A ENSG00000189180 CDS Human protein_coding chr10:38305805 chr10:38305807 nonsynonymous SNV 0.169 3 23 hm5C_associated_SNPs_64865 0 0 1 3 38305804 38305828 mRNA hsa-miR-200b ZNF33A miRanda miRanda
5641 chr10 38305807 38305807 1 + G T UCEC 38305805 + 38305785 38305825 41 TCTGAATGTTTCAGGTAGAACAGAAGTCCCAGGAGTCAGTA TCTGAATGTTTCAGGTAGAACATAAGTCCCAGGAGTCAGTA < 41bp 0.75118632739602 0.443289794237215 0.075820655 0.037440956 prediction 0.502372654792039 Functional Loss - ZNF33A ENSG00000189180 CDS Human protein_coding chr10:38305805 chr10:38305807 nonsynonymous SNV 0.169 3 23 hm5C_associated_SNPs_64865 0 0 1 3 38305803 38305828 mRNA hsa-miR-200c ZNF33A miRanda miRanda
5642 chr10 38305807 38305807 1 + G T UCEC 38305805 + 38305785 38305825 41 TCTGAATGTTTCAGGTAGAACAGAAGTCCCAGGAGTCAGTA TCTGAATGTTTCAGGTAGAACATAAGTCCCAGGAGTCAGTA < 41bp 0.75118632739602 0.443289794237215 0.075820655 0.037440956 prediction 0.502372654792039 Functional Loss - ZNF33A ENSG00000189180 CDS Human protein_coding chr10:38305805 chr10:38305807 nonsynonymous SNV 0.169 3 23 hm5C_associated_SNPs_64865 0 0 1 3 38305807 38305828 mRNA hsa-miR-429 ZNF33A miRanda miRanda
5643 chr22 32239727 32239727 1 + C T rs140039884 32239725 + 32239705 32239745 41 CCTGCTGGGTGGAATTCTCCCACGAACGGCTGGAGGAGTAC CCTGCTGGGTGGAATTCTCCCATGAACGGCTGGAGGAGTAC < 41bp 0.77861020326534 0.527508181144087 0.18240109 0.14486325 prediction 0.502204044242507 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32239725 chr22:32239727 synonymous SNV . 0 23 hm5C_associated_SNPs_64891 0 0 0 1 32239705 32239728 mRNA hsa-miR-491-5p DEPDC5 miRanda miRanda
5644 chr1 146747042 146747042 1 + A T UCEC 146747038 + 146747018 146747058 41 TGGAGTTGGCATGAACTTAACAGCAGCAGATACTGTGATTT TGGAGTTGGCATGAACTTAACAGCTGCAGATACTGTGATTT < 41bp 0.750990184309253 0.44138056115057 0.35577694 0.20256343 prediction 0.501980368618505 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146747038 chr1:146747042 synonymous SNV . 0 25 hm5C_associated_SNPs_64925 0 0 1 3 146747036 146747056 mRNA hsa-miR-27a CHD1L miRanda miRanda
5645 chr1 146747042 146747042 1 + A T UCEC 146747038 + 146747018 146747058 41 TGGAGTTGGCATGAACTTAACAGCAGCAGATACTGTGATTT TGGAGTTGGCATGAACTTAACAGCTGCAGATACTGTGATTT < 41bp 0.750990184309253 0.44138056115057 0.35577694 0.20256343 prediction 0.501980368618505 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146747038 chr1:146747042 synonymous SNV . 0 25 hm5C_associated_SNPs_64925 0 0 1 3 146747036 146747056 mRNA hsa-miR-27b CHD1L miRanda miRanda
5646 chr1 146747042 146747042 1 + A T UCEC 146747038 + 146747018 146747058 41 TGGAGTTGGCATGAACTTAACAGCAGCAGATACTGTGATTT TGGAGTTGGCATGAACTTAACAGCTGCAGATACTGTGATTT < 41bp 0.750990184309253 0.44138056115057 0.35577694 0.20256343 prediction 0.501980368618505 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146747038 chr1:146747042 synonymous SNV . 0 25 hm5C_associated_SNPs_64925 0 0 1 3 146747034 146747054 mRNA hsa-miR-144 CHD1L miRanda miRanda
5647 chr22 42141925 42141925 1 + G T UCEC 42141923 + 42141903 42141943 41 TCCAGAGTGAGCCTTCAGCCCAGGAGAATCCATTCACAGCT TCCAGAGTGAGCCTTCAGCCCATGAGAATCCATTCACAGCT < 41bp 0.750955249147829 0.42555637171332 0.5212577 0.09534687 prediction 0.501910498295657 Functional Loss - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42141923 chr22:42141925 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_64940 0 0 0 1 42141907 42141934 mRNA hsa-miR-876-5p MEI1 miRanda miRanda
5648 chrX 37651241 37651241 1 + G T UCEC 37651238 + 37651218 37651258 41 TAATCCAAAGTGCTGCTCAACAAGAGTTCGAAGACAACTGG TAATCCAAAGTGCTGCTCAACAATAGTTCGAAGACAACTGG < 41bp 0.750823338987963 0.370736182930487 0.071704924 0.023768216 prediction 0.501646677975927 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37651238 chrX:37651241 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_64993 0 0 0 3 37651235 37651259 mRNA hsa-miR-199a-5p CYBB miRanda miRanda
5649 chrX 37651241 37651241 1 + G T UCEC 37651238 + 37651218 37651258 41 TAATCCAAAGTGCTGCTCAACAAGAGTTCGAAGACAACTGG TAATCCAAAGTGCTGCTCAACAATAGTTCGAAGACAACTGG < 41bp 0.750823338987963 0.370736182930487 0.071704924 0.023768216 prediction 0.501646677975927 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37651238 chrX:37651241 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_64993 0 0 0 3 37651235 37651259 mRNA hsa-miR-199b-5p CYBB miRanda miRanda
5650 chrX 37651241 37651241 1 + G T UCEC 37651238 + 37651218 37651258 41 TAATCCAAAGTGCTGCTCAACAAGAGTTCGAAGACAACTGG TAATCCAAAGTGCTGCTCAACAATAGTTCGAAGACAACTGG < 41bp 0.750823338987963 0.370736182930487 0.071704924 0.023768216 prediction 0.501646677975927 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37651238 chrX:37651241 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_64993 0 0 0 3 37651238 37651260 mRNA hsa-miR-145 CYBB miRanda miRanda
5651 chr7 121944000 121944000 1 + G T TGCT 121943998 + 121943978 121944018 41 GGTGGCATGGGCCGTCACCTCGGTTCAGGTAGCACAAGGCG GGTGGCATGGGCCGTCACCTCGTTTCAGGTAGCACAAGGCG < 41bp 0.750667609682156 0.410405463313224 0.7731224 0.31769818 prediction 0.501335219364312 Functional Loss - FEZF1 ENSG00000128610 CDS Human protein_coding chr7:121943998 chr7:121944000 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_65042 0 0 0 1 121943988 121944012 mRNA hsa-miR-874 LOC154860 miRanda miRanda
5652 chr9 35660849 35660849 1 + G T LGG 35660847 + 35660827 35660867 41 GGACAAGGATATGGAGGCTTCAGAACCAGGTGAAGGCTCGG GGACAAGGATATGGAGGCTTCATAACCAGGTGAAGGCTCGG < 41bp 0.750588234026007 0.425366544924082 0.08341807 0.0063960254 prediction 0.501176468052014 Functional Loss - CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660847 chr9:35660849 stopgain 0.977 0 23 hm5C_associated_SNPs_65065 0 0 1 1 35660847 35660868 mRNA hsa-miR-615-3p CCDC107 miRanda miRanda
5653 chr2 98744741 98744741 1 + G T LUSC 98744739 + 98744719 98744759 41 CTTTGTGGTGGGGGATGTTCCTGAAGAATCCAAGGAGCTTC CTTTGTGGTGGGGGATGTTCCTTAAGAATCCAAGGAGCTTC < 41bp 0.750562802756257 0.435217154892512 0.33263808 0.039704442 prediction 0.501125605512515 Functional Loss - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98744739 chr2:98744741 stopgain 0.973 0 23 hm5C_associated_SNPs_65075 0 0 0 1 98744722 98744742 mRNA hsa-miR-873 VWA3B miRanda miRanda
5654 chr8 39806717 39806717 1 + A T CESC 39806713 + 39806693 39806733 41 CCACAGACCGAATGTGAAGACAGCAGTGCCATTGTCTTTGG CCACAGACCGAATGTGAAGACAGCTGTGCCATTGTCTTTGG < 41bp 0.855365812501746 0.604939783296978 0.048498303 0.113971025 prediction 0.500852058409537 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39806713 chr8:39806717 synonymous SNV . 0 25 hm5C_associated_SNPs_65111 0 0 0 1 39806705 39806725 mRNA hsa-miR-183 IDO2 miRanda miRanda
5655 chr3 122808133 122808133 1 + C T SKCM 122808131 + 122808111 122808151 41 AATAATGTACTGGTGCTTTACTCCAAATCTGGTGAGTGTCC AATAATGTACTGGTGCTTTACTTCAAATCTGGTGAGTGTCC < 41bp 0.750341528775771 0.449140090313986 0.95990026 0.15305835 prediction 0.500683057551543 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122808131 chr3:122808133 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_65143 0 0 1 1 122808133 122808141 mRNA hsa-miR-22 PDIA5 miRanda miRanda
5656 chr19 58117676 58117676 1 + C T PAAD 58117674 + 58117654 58117694 41 TTCTTCGACACAGGAAAGCACACGGTAGAACAAGGACTCAT TTCTTCGACACAGGAAAGCACATGGTAGAACAAGGACTCAT < 41bp 0.751250712224355 0.500986748095565 0.35030234 0.6234519 prediction 0.500527928257582 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58117674 chr19:58117676 synonymous SNV . 0 23 hm5C_associated_SNPs_65165 0 0 1 1 58117652 58117678 mRNA hsa-miR-187 ZNF530 miRanda miRanda
5657 chr22 18975306 18975306 1 + C T rs117952338 18975304 + 18975284 18975324 41 ATCTTTGACAAGTTCAACTTCACGGGAGCCAGAGTCCCATG ATCTTTGACAAGTTCAACTTCATGGGAGCCAGAGTCCCATG < 41bp 0.750230046767062 0.499437700194723 0.19243285 0.2951949 prediction 0.500460093534124 Functional Loss - DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18975304 chr22:18975306 . . 0 23 hm5C_associated_SNPs_65180 0 0 0 1 18975293 18975316 mRNA hsa-miR-149 DGCR5 miRanda miRanda
5658 chr19 22785317 22785317 1 + G T HNSC 22785315 + 22785295 22785335 41 AGGGTGCCATGGAGAAACTGCAGGTGAGTGAGTCTCTTCTG AGGGTGCCATGGAGAAACTGCATGTGAGTGAGTCTCTTCTG < 41bp 0.750221588823619 0.418003592145545 0.9109367 0.7292441 prediction 0.500443177647238 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785315 chr19:22785317 . . 0 23 hm5C_associated_SNPs_65186 0 0 0 3 22785314 22785317 mRNA hsa-miR-148a LOC440518 miRanda miRanda
5659 chr19 22785317 22785317 1 + G T HNSC 22785315 + 22785295 22785335 41 AGGGTGCCATGGAGAAACTGCAGGTGAGTGAGTCTCTTCTG AGGGTGCCATGGAGAAACTGCATGTGAGTGAGTCTCTTCTG < 41bp 0.750221588823619 0.418003592145545 0.9109367 0.7292441 prediction 0.500443177647238 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785315 chr19:22785317 . . 0 23 hm5C_associated_SNPs_65186 0 0 0 3 22785313 22785317 mRNA hsa-miR-152 LOC440518 miRanda miRanda
5660 chr19 22785317 22785317 1 + G T HNSC 22785315 + 22785295 22785335 41 AGGGTGCCATGGAGAAACTGCAGGTGAGTGAGTCTCTTCTG AGGGTGCCATGGAGAAACTGCATGTGAGTGAGTCTCTTCTG < 41bp 0.750221588823619 0.418003592145545 0.9109367 0.7292441 prediction 0.500443177647238 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785315 chr19:22785317 . . 0 23 hm5C_associated_SNPs_65186 0 0 0 3 22785314 22785317 mRNA hsa-miR-148b LOC440518 miRanda miRanda
5661 chr4 158283987 158283987 1 + G T LUAD 158283985 + 158283965 158284005 41 CCTCAGTCTGAGCAACGTTGCTGGAGTATTCTACATCCTTG CCTCAGTCTGAGCAACGTTGCTTGAGTATTCTACATCCTTG < 41bp 0.865375381710024 0.615359032221988 0.59056973 0.11016995 prediction 0.500032698976073 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158283985 chr4:158283987 stopgain 0.999 1 23 hm5C_associated_SNPs_65270 0 0 1 3 158283976 158283995 mRNA hsa-miR-200b GRIA2 miRanda miRanda
5662 chr4 158283987 158283987 1 + G T LUAD 158283985 + 158283965 158284005 41 CCTCAGTCTGAGCAACGTTGCTGGAGTATTCTACATCCTTG CCTCAGTCTGAGCAACGTTGCTTGAGTATTCTACATCCTTG < 41bp 0.865375381710024 0.615359032221988 0.59056973 0.11016995 prediction 0.500032698976073 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158283985 chr4:158283987 stopgain 0.999 1 23 hm5C_associated_SNPs_65270 0 0 1 3 158283975 158283995 mRNA hsa-miR-200c GRIA2 miRanda miRanda
5663 chr4 158283987 158283987 1 + G T LUAD 158283985 + 158283965 158284005 41 CCTCAGTCTGAGCAACGTTGCTGGAGTATTCTACATCCTTG CCTCAGTCTGAGCAACGTTGCTTGAGTATTCTACATCCTTG < 41bp 0.865375381710024 0.615359032221988 0.59056973 0.11016995 prediction 0.500032698976073 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158283985 chr4:158283987 stopgain 0.999 1 23 hm5C_associated_SNPs_65270 0 0 1 3 158283974 158283995 mRNA hsa-miR-429 GRIA2 miRanda miRanda
5664 chr8 41355096 41355096 1 + C T rs17656952 41355094 + 41355074 41355114 41 TTTATGCAGAAGCAGAGAAGCTCGGCGGCCAGTCATATCTC TTTATGCAGAAGCAGAGAAGCTTGGCGGCCAGTCATATCTC < 41bp 0.821929847467817 0.572068226072539 0.18883282 0.13123798 prediction 0.499723242790555 Functional Loss - GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355094 chr8:41355096 synonymous SNV . 0 23 hm5C_associated_SNPs_65314 0 0 1 2 41355086 41355107 mRNA hsa-miR-193a-3p GOLGA7 miRanda miRanda
5665 chr8 41355096 41355096 1 + C T rs17656952 41355094 + 41355074 41355114 41 TTTATGCAGAAGCAGAGAAGCTCGGCGGCCAGTCATATCTC TTTATGCAGAAGCAGAGAAGCTTGGCGGCCAGTCATATCTC < 41bp 0.821929847467817 0.572068226072539 0.18883282 0.13123798 prediction 0.499723242790555 Functional Loss - GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355094 chr8:41355096 synonymous SNV . 0 23 hm5C_associated_SNPs_65314 0 0 1 2 41355086 41355107 mRNA hsa-miR-193b GOLGA7 miRanda miRanda
5666 chr19 42301763 42301763 1 + A C rs61737014 42301762 + 42301742 42301782 41 AGCGGTCGAGAGACAATATACACCAATGCATCCCTGCTGAT AGCGGTCGAGAGACAATATACCCCAATGCATCCCTGCTGAT < 41bp 0.755248287829253 0.50555316514946 0.05040714 0.03638962 prediction 0.499390245359586 Functional Loss - CEACAM3 ENSG00000170956 CDS Human protein_coding chr19:42301762 chr19:42301763 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_65377 0 0 0 3 42301753 42301772 mRNA hsa-miR-33a CEACAM3 miRanda miRanda
5667 chr19 42301763 42301763 1 + A C rs61737014 42301762 + 42301742 42301782 41 AGCGGTCGAGAGACAATATACACCAATGCATCCCTGCTGAT AGCGGTCGAGAGACAATATACCCCAATGCATCCCTGCTGAT < 41bp 0.755248287829253 0.50555316514946 0.05040714 0.03638962 prediction 0.499390245359586 Functional Loss - CEACAM3 ENSG00000170956 CDS Human protein_coding chr19:42301762 chr19:42301763 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_65377 0 0 0 3 42301760 42301781 mRNA hsa-miR-214 CEACAM3 miRanda miRanda
5668 chr19 42301763 42301763 1 + A C rs61737014 42301762 + 42301742 42301782 41 AGCGGTCGAGAGACAATATACACCAATGCATCCCTGCTGAT AGCGGTCGAGAGACAATATACCCCAATGCATCCCTGCTGAT < 41bp 0.755248287829253 0.50555316514946 0.05040714 0.03638962 prediction 0.499390245359586 Functional Loss - CEACAM3 ENSG00000170956 CDS Human protein_coding chr19:42301762 chr19:42301763 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_65377 0 0 0 3 42301754 42301772 mRNA hsa-miR-33b CEACAM3 miRanda miRanda
5669 chr22 24123392 24123392 1 + C T LUAD 24123390 + 24123370 24123410 41 CCCACCCCAGCCAGACGCCCCGCCAGATGCCTGTGAGGCCT CCCACCCCAGCCAGACGCCCCGTCAGATGCCTGTGAGGCCT < 41bp 0.749679452772639 0.486096287347502 0.3943585 0.15687844 prediction 0.499358905545277 Functional Loss - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24123390 chr22:24123392 nonsynonymous SNV 0.741 3 23 hm5C_associated_SNPs_65380 0 0 1 1 24123391 24123414 mRNA hsa-miR-28-5p MMP11 miRanda miRanda
5670 chr9 125033218 125033218 1 + C T OV 125033216 + 125033196 125033236 41 GCATGGTCCACCCTACCTTTCGCAATTATCTTGCAGCCTCT GCATGGTCCACCCTACCTTTCGTAATTATCTTGCAGCCTCT < 41bp 0.797185742957405 0.547522043135823 0.40321684 0.530396 prediction 0.499327399643164 Functional Loss - MRRF ENSG00000148187 CDS Human protein_coding chr9:125033216 chr9:125033218 synonymous SNV . 0 23 hm5C_associated_SNPs_65390 0 0 1 1 125033217 125033236 mRNA hsa-miR-485-5p MRRF miRanda miRanda
5671 chr2 190660536 190660536 1 + G T rs143323454 190660533 + 190660513 190660553 41 AAAATTGAGGTGCGAGATAACGGGGAGGGTATCAAGGCTGT AAAATTGAGGTGCGAGATAACGGTGAGGGTATCAAGGCTGT < 41bp 0.892683599559727 0.643132383985173 0.922631 0.7392849 prediction 0.499102431149108 Functional Loss - PMS1 ENSG00000064933 CDS Human protein_coding chr2:190660533 chr2:190660536 synonymous SNV . 0 24 hm5C_associated_SNPs_65427 1 0 1 1 190660523 190660545 mRNA hsa-miR-875-5p PMS1 miRanda miRanda
5672 chr3 179336216 179336216 1 + G T UCEC 179336213 + 179336193 179336233 41 TCTCTTGTAGCATCCCATATCAAGATGGATTGCCCGTAATT TCTCTTGTAGCATCCCATATCAATATGGATTGCCCGTAATT < 41bp 0.749474018070338 0.396093590602254 0.9270033 0.084560275 prediction 0.498948036140675 Functional Loss - NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179336213 chr3:179336216 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_65456 0 0 1 2 179336215 179336241 mRNA hsa-miR-376a NDUFB5 miRanda miRanda
5673 chr3 179336216 179336216 1 + G T UCEC 179336213 + 179336193 179336233 41 TCTCTTGTAGCATCCCATATCAAGATGGATTGCCCGTAATT TCTCTTGTAGCATCCCATATCAATATGGATTGCCCGTAATT < 41bp 0.749474018070338 0.396093590602254 0.9270033 0.084560275 prediction 0.498948036140675 Functional Loss - NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179336213 chr3:179336216 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_65456 0 0 1 2 179336214 179336241 mRNA hsa-miR-376b NDUFB5 miRanda miRanda
5674 chr6 71570005 71570005 1 + G T HNSC 71570003 + 71569983 71570023 41 AGGATGGTCTGGAAGCTCATCAGGTCAGACTCTCAGCACAC AGGATGGTCTGGAAGCTCATCATGTCAGACTCTCAGCACAC < 41bp 0.749344160764936 0.418868927517234 0.87545127 0.36907178 prediction 0.498688321529873 Functional Loss - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71570003 chr6:71570005 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_65498 0 0 1 2 71569989 71570010 mRNA hsa-miR-192 SMAP1 miRanda miRanda
5675 chr6 71570005 71570005 1 + G T HNSC 71570003 + 71569983 71570023 41 AGGATGGTCTGGAAGCTCATCAGGTCAGACTCTCAGCACAC AGGATGGTCTGGAAGCTCATCATGTCAGACTCTCAGCACAC < 41bp 0.749344160764936 0.418868927517234 0.87545127 0.36907178 prediction 0.498688321529873 Functional Loss - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71570003 chr6:71570005 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_65498 0 0 1 2 71569989 71570010 mRNA hsa-miR-215 SMAP1 miRanda miRanda
5676 chr11 70028779 70028779 1 + G C LUAD 70028775 + 70028755 70028795 41 GACCCCCTGGACCTGGGCTACGAGGTGCAGATCTGCAGGTA GACCCCCTGGACCTGGGCTACGAGCTGCAGATCTGCAGGTA < 41bp 0.749325154374982 0.456806396475723 0.9251466 0.32962823 prediction 0.498650308749964 Functional Loss - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70028775 chr11:70028779 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_65505 0 0 0 1 70028775 70028792 mRNA hsa-miR-875-5p ANO1 miRanda miRanda
5677 chr10 33134531 33134531 1 + C T READ 33134529 + 33134509 33134549 41 GGTCTAATGAAGGAGTCAACCACGACACAATTAAAAAGTCA GGTCTAATGAAGGAGTCAACCATGACACAATTAAAAAGTCA < 41bp 0.749292644912431 0.488621032375078 0.22205779 0.32265818 prediction 0.498585289824863 Functional Loss - CCDC7 ENSG00000150076 CDS Human other chr10:33134529 chr10:33134531 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_65515 0 0 0 1 33134518 33134539 mRNA hsa-miR-599 C10orf68 miRanda miRanda
5678 chr7 23239850 23239850 1 + G T LUSC 23239847 + 23239827 23239867 41 CTTTAGTTTTAAAACAAACTCTGGATTTGCTGCTGCCTCTT CTTTAGTTTTAAAACAAACTCTGTATTTGCTGCTGCCTCTT < 41bp 0.90980961428868 0.660596776853972 0.2691064 0.06863031 prediction 0.498425674869415 Functional Loss - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23239847 chr7:23239850 nonsynonymous SNV 0.584 0 24 hm5C_associated_SNPs_65543 0 0 1 6 23239839 23239861 mRNA hsa-miR-15a NUPL2 miRanda miRanda
5679 chr7 23239850 23239850 1 + G T LUSC 23239847 + 23239827 23239867 41 CTTTAGTTTTAAAACAAACTCTGGATTTGCTGCTGCCTCTT CTTTAGTTTTAAAACAAACTCTGTATTTGCTGCTGCCTCTT < 41bp 0.90980961428868 0.660596776853972 0.2691064 0.06863031 prediction 0.498425674869415 Functional Loss - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23239847 chr7:23239850 nonsynonymous SNV 0.584 0 24 hm5C_associated_SNPs_65543 0 0 1 6 23239839 23239861 mRNA hsa-miR-16 NUPL2 miRanda miRanda
5680 chr7 23239850 23239850 1 + G T LUSC 23239847 + 23239827 23239867 41 CTTTAGTTTTAAAACAAACTCTGGATTTGCTGCTGCCTCTT CTTTAGTTTTAAAACAAACTCTGTATTTGCTGCTGCCTCTT < 41bp 0.90980961428868 0.660596776853972 0.2691064 0.06863031 prediction 0.498425674869415 Functional Loss - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23239847 chr7:23239850 nonsynonymous SNV 0.584 0 24 hm5C_associated_SNPs_65543 0 0 1 6 23239839 23239861 mRNA hsa-miR-15b NUPL2 miRanda miRanda
5681 chr7 23239850 23239850 1 + G T LUSC 23239847 + 23239827 23239867 41 CTTTAGTTTTAAAACAAACTCTGGATTTGCTGCTGCCTCTT CTTTAGTTTTAAAACAAACTCTGTATTTGCTGCTGCCTCTT < 41bp 0.90980961428868 0.660596776853972 0.2691064 0.06863031 prediction 0.498425674869415 Functional Loss - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23239847 chr7:23239850 nonsynonymous SNV 0.584 0 24 hm5C_associated_SNPs_65543 0 0 1 6 23239841 23239861 mRNA hsa-miR-195 NUPL2 miRanda miRanda
5682 chr7 23239850 23239850 1 + G T LUSC 23239847 + 23239827 23239867 41 CTTTAGTTTTAAAACAAACTCTGGATTTGCTGCTGCCTCTT CTTTAGTTTTAAAACAAACTCTGTATTTGCTGCTGCCTCTT < 41bp 0.90980961428868 0.660596776853972 0.2691064 0.06863031 prediction 0.498425674869415 Functional Loss - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23239847 chr7:23239850 nonsynonymous SNV 0.584 0 24 hm5C_associated_SNPs_65543 0 0 1 6 23239839 23239861 mRNA hsa-miR-424 NUPL2 miRanda miRanda
5683 chr7 23239850 23239850 1 + G T LUSC 23239847 + 23239827 23239867 41 CTTTAGTTTTAAAACAAACTCTGGATTTGCTGCTGCCTCTT CTTTAGTTTTAAAACAAACTCTGTATTTGCTGCTGCCTCTT < 41bp 0.90980961428868 0.660596776853972 0.2691064 0.06863031 prediction 0.498425674869415 Functional Loss - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23239847 chr7:23239850 nonsynonymous SNV 0.584 0 24 hm5C_associated_SNPs_65543 0 0 1 6 23239840 23239861 mRNA hsa-miR-497 NUPL2 miRanda miRanda
5684 chr7 66413544 66413544 1 + C T UCEC 66413542 + 66413522 66413562 41 CTTTCATAGGCAGGGAAGCCCACGAGGAGATAAACATCACC CTTTCATAGGCAGGGAAGCCCATGAGGAGATAAACATCACC < 41bp 0.820692772502656 0.571696980957087 0.87047756 0.51558506 prediction 0.497991583091138 Functional Loss - TMEM248 ENSG00000106609 CDS Human protein_coding chr7:66413542 chr7:66413544 synonymous SNV . 0 23 hm5C_associated_SNPs_65615 0 0 1 2 66413531 66413548 mRNA hsa-miR-330-5p C7orf42 miRanda miRanda
5685 chr7 66413544 66413544 1 + C T UCEC 66413542 + 66413522 66413562 41 CTTTCATAGGCAGGGAAGCCCACGAGGAGATAAACATCACC CTTTCATAGGCAGGGAAGCCCATGAGGAGATAAACATCACC < 41bp 0.820692772502656 0.571696980957087 0.87047756 0.51558506 prediction 0.497991583091138 Functional Loss - TMEM248 ENSG00000106609 CDS Human protein_coding chr7:66413542 chr7:66413544 synonymous SNV . 0 23 hm5C_associated_SNPs_65615 0 0 1 2 66413531 66413548 mRNA hsa-miR-326 C7orf42 miRanda miRanda
5686 chr11 44952669 44952669 1 + G C rs836001 44952665 + 44952645 44952685 41 TCCCACCAGGTCTCTGAGCTCAGTGTTACCAAATTCGCCCT TCCCACCAGGTCTCTGAGCTCAGTCTTACCAAATTCGCCCT < 41bp 0.748983386084071 0.469925489735214 0.18075898 0.041829616 prediction 0.497966772168142 Functional Loss - TSPAN18 ENSG00000157570 UTR3 Human protein_coding chr11:44952665 chr11:44952669 . . 0 25 hm5C_associated_SNPs_65621 0 0 0 2 44952652 44952672 mRNA hsa-miR-141 TSPAN18 miRanda miRanda
5687 chr11 44952669 44952669 1 + G C rs836001 44952665 + 44952645 44952685 41 TCCCACCAGGTCTCTGAGCTCAGTGTTACCAAATTCGCCCT TCCCACCAGGTCTCTGAGCTCAGTCTTACCAAATTCGCCCT < 41bp 0.748983386084071 0.469925489735214 0.18075898 0.041829616 prediction 0.497966772168142 Functional Loss - TSPAN18 ENSG00000157570 UTR3 Human protein_coding chr11:44952665 chr11:44952669 . . 0 25 hm5C_associated_SNPs_65621 0 0 0 2 44952651 44952672 mRNA hsa-miR-200a TSPAN18 miRanda miRanda
5688 chr17 7344857 7344857 1 + C T UCEC 7344855 + 7344835 7344875 41 GTTTCTACCTCCAGGCGAATCCCGACGGAAGCATCCAGGGC GTTTCTACCTCCAGGCGAATCCTGACGGAAGCATCCAGGGC < 41bp 0.810834658572258 0.561924177558902 0.7756232 0.39646834 prediction 0.497820962026711 Functional Loss - FGF11 ENSG00000161958 CDS Human protein_coding chr17:7344855 chr17:7344857 synonymous SNV . 0 23 hm5C_associated_SNPs_65644 0 0 0 1 7344856 7344877 mRNA hsa-miR-874 FGF11 miRanda miRanda
5689 chrX 153172036 153172036 1 + A T MESO 153172032 + 153172012 153172052 41 CTCAACAGCTGCACCAACCCCTGGATCTATGCATCTTTCAG CTCAACAGCTGCACCAACCCCTGGTTCTATGCATCTTTCAG < 41bp 0.867830597126953 0.618935888318386 0.41398424 0.21750799 prediction 0.497789417617133 Functional Loss - AVPR2 ENSG00000126895 CDS Human protein_coding chrX:153172032 chrX:153172036 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_65649 0 0 0 5 153172028 153172050 mRNA hsa-miR-17 AVPR2 miRanda miRanda
5690 chrX 153172036 153172036 1 + A T MESO 153172032 + 153172012 153172052 41 CTCAACAGCTGCACCAACCCCTGGATCTATGCATCTTTCAG CTCAACAGCTGCACCAACCCCTGGTTCTATGCATCTTTCAG < 41bp 0.867830597126953 0.618935888318386 0.41398424 0.21750799 prediction 0.497789417617133 Functional Loss - AVPR2 ENSG00000126895 CDS Human protein_coding chrX:153172032 chrX:153172036 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_65649 0 0 0 5 153172028 153172050 mRNA hsa-miR-20a AVPR2 miRanda miRanda
5691 chrX 153172036 153172036 1 + A T MESO 153172032 + 153172012 153172052 41 CTCAACAGCTGCACCAACCCCTGGATCTATGCATCTTTCAG CTCAACAGCTGCACCAACCCCTGGTTCTATGCATCTTTCAG < 41bp 0.867830597126953 0.618935888318386 0.41398424 0.21750799 prediction 0.497789417617133 Functional Loss - AVPR2 ENSG00000126895 CDS Human protein_coding chrX:153172032 chrX:153172036 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_65649 0 0 0 5 153172028 153172050 mRNA hsa-miR-106a AVPR2 miRanda miRanda
5692 chrX 153172036 153172036 1 + A T MESO 153172032 + 153172012 153172052 41 CTCAACAGCTGCACCAACCCCTGGATCTATGCATCTTTCAG CTCAACAGCTGCACCAACCCCTGGTTCTATGCATCTTTCAG < 41bp 0.867830597126953 0.618935888318386 0.41398424 0.21750799 prediction 0.497789417617133 Functional Loss - AVPR2 ENSG00000126895 CDS Human protein_coding chrX:153172032 chrX:153172036 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_65649 0 0 0 5 153172024 153172045 mRNA hsa-miR-153 AVPR2 miRanda miRanda
5693 chrX 153172036 153172036 1 + A T MESO 153172032 + 153172012 153172052 41 CTCAACAGCTGCACCAACCCCTGGATCTATGCATCTTTCAG CTCAACAGCTGCACCAACCCCTGGTTCTATGCATCTTTCAG < 41bp 0.867830597126953 0.618935888318386 0.41398424 0.21750799 prediction 0.497789417617133 Functional Loss - AVPR2 ENSG00000126895 CDS Human protein_coding chrX:153172032 chrX:153172036 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_65649 0 0 0 5 153172028 153172050 mRNA hsa-miR-20b AVPR2 miRanda miRanda
5694 chr3 9969872 9969872 1 + C T SKCM 9969870 + 9969850 9969890 41 GTGTGGCCTCTGGAACCTGACTCCGTTAGGACGAACATCTG GTGTGGCCTCTGGAACCTGACTTCGTTAGGACGAACATCTG < 41bp 0.748789283887733 0.491045310939074 0.18113539 0.06257188 prediction 0.497578567775467 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9969870 chr3:9969872 nonsynonymous SNV 0.070 3 23 hm5C_associated_SNPs_65678 0 0 1 2 9969870 9969893 mRNA hsa-miR-449a IL17RC miRanda miRanda
5695 chr3 9969872 9969872 1 + C T SKCM 9969870 + 9969850 9969890 41 GTGTGGCCTCTGGAACCTGACTCCGTTAGGACGAACATCTG GTGTGGCCTCTGGAACCTGACTTCGTTAGGACGAACATCTG < 41bp 0.748789283887733 0.491045310939074 0.18113539 0.06257188 prediction 0.497578567775467 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9969870 chr3:9969872 nonsynonymous SNV 0.070 3 23 hm5C_associated_SNPs_65678 0 0 1 2 9969870 9969893 mRNA hsa-miR-449b IL17RC miRanda miRanda
5696 chr12 3000150 3000150 1 + G C BLCA 3000146 + 3000126 3000166 41 CGCTGCCGGCTCAGTCCCAGCGGCGACAGGTCAGACAGGGC CGCTGCCGGCTCAGTCCCAGCGGCCACAGGTCAGACAGGGC < 41bp 0.74878336121285 0.457474833999883 0.4077593 0.28735307 prediction 0.4975667224257 Functional Loss - TULP3 ENSG00000078246 CDS Human protein_coding chr12:3000146 chr12:3000150 nonsynonymous SNV 0.959 3 25 hm5C_associated_SNPs_65679 0 0 1 1 3000142 3000154 mRNA hsa-miR-7 TULP3 miRanda miRanda
5697 chr2 160604591 160604591 1 + C T UCEC 160604589 + 160604569 160604609 41 TTCAGAAAGGGTTGTTTCATCTCAAAGACCATTTCAAGAAT TTCAGAAAGGGTTGTTTCATCTTAAAGACCATTTCAAGAAT < 41bp 0.832624837805172 0.583882662357861 0.39332822 0.094401985 prediction 0.497484350894622 Functional Loss - MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160604589 chr2:160604591 stopgain 1.000 0 23 hm5C_associated_SNPs_65699 0 0 1 2 160604583 160604605 mRNA hsa-miR-203 MARCH7 miRanda miRanda
5698 chr2 160604591 160604591 1 + C T UCEC 160604589 + 160604569 160604609 41 TTCAGAAAGGGTTGTTTCATCTCAAAGACCATTTCAAGAAT TTCAGAAAGGGTTGTTTCATCTTAAAGACCATTTCAAGAAT < 41bp 0.832624837805172 0.583882662357861 0.39332822 0.094401985 prediction 0.497484350894622 Functional Loss - MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160604589 chr2:160604591 stopgain 1.000 0 23 hm5C_associated_SNPs_65699 0 0 1 2 160604572 160604592 mRNA hsa-miR-143 MARCH7 miRanda miRanda
5699 chr5 162945236 162945236 1 + G T UCEC 162945233 + 162945213 162945253 41 TGTCCTAGGAGCACAACGTCCGAGAAATGCTCAGCTTGACT TGTCCTAGGAGCACAACGTCCGATAAATGCTCAGCTTGACT < 41bp 0.893658083204393 0.645158831156745 0.4955603 0.2234573 prediction 0.496998504095295 Functional Loss - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162945233 chr5:162945236 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_65789 0 0 1 1 162945235 162945257 mRNA hsa-miR-497 MAT2B miRanda miRanda
5700 chr7 149558039 149558039 1 + C T COAD 149558037 + 149558017 149558057 41 TTAGGCAAGTACCGCAATCGCACGGCGTGCACTCAGTTCAT TTAGGCAAGTACCGCAATCGCATGGCGTGCACTCAGTTCAT < 41bp 0.785548358134026 0.537090302712629 0.15110707 0.20963317 prediction 0.496916110842795 Functional Loss - ZNF862 ENSG00000106479 CDS Human protein_coding chr7:149558037 chr7:149558039 nonsynonymous SNV 0.875 3 23 hm5C_associated_SNPs_65801 0 0 0 1 149558038 149558059 mRNA hsa-miR-146a ZNF862 miRanda miRanda
5701 chr13 100959473 100959473 1 + G T THYM 100959471 + 100959451 100959491 41 AGTGGACAGTGGCATCCAACCAGGAAGTGATATTAGCATTT AGTGGACAGTGGCATCCAACCATGAAGTGATATTAGCATTT < 41bp 0.748377105846664 0.436063863652553 0.9039996 0.2808791 prediction 0.496754211693327 Functional Loss - PCCA ENSG00000175198 CDS Human protein_coding chr13:100959471 chr13:100959473 stopgain 1.000 1 23 hm5C_associated_SNPs_65828 0 0 1 2 100959470 100959492 mRNA hsa-miR-155 PCCA miRanda miRanda
5702 chr13 100959473 100959473 1 + G T THYM 100959471 + 100959451 100959491 41 AGTGGACAGTGGCATCCAACCAGGAAGTGATATTAGCATTT AGTGGACAGTGGCATCCAACCATGAAGTGATATTAGCATTT < 41bp 0.748377105846664 0.436063863652553 0.9039996 0.2808791 prediction 0.496754211693327 Functional Loss - PCCA ENSG00000175198 CDS Human protein_coding chr13:100959471 chr13:100959473 stopgain 1.000 1 23 hm5C_associated_SNPs_65828 0 0 1 2 100959468 100959491 mRNA hsa-miR-454 PCCA miRanda miRanda
5703 chr3 108897305 108897305 1 + G T UCEC 108897302 + 108897282 108897322 41 AGGATCAGGGAAGTCAGAGCCCAGACCTCGGTTCACGGTGC AGGATCAGGGAAGTCAGAGCCCATACCTCGGTTCACGGTGC < 41bp 0.748298909214278 0.391714122798775 0.37238342 0.2601393 prediction 0.496597818428556 Functional Loss - LINC00488 ENSG00000214381 ncRNA_exonic Human lincRNA chr3:108897302 chr3:108897305 . . 0 24 hm5C_associated_SNPs_65857 0 0 0 1 108897285 108897306 mRNA hsa-miR-149 C3orf66 miRanda miRanda
5704 chr17 33513591 33513591 1 + A C rs3744365 33513590 + 33513570 33513610 41 GTGTCTTAGACAGCGACCCTCAGGGATGCTGGGAGTGGTCC GTGTCTTAGACAGCGACCCTCCGGGATGCTGGGAGTGGTCC < 41bp 0.763999818520715 0.515872358867711 0.914926 0.8966898 prediction 0.496254919306007 Functional Loss - UNC45B ENSG00000141161 UTR3 Human protein_coding chr17:33513590 chr17:33513591 . . 0 22 hm5C_associated_SNPs_65907 0 0 0 2 33513579 33513595 mRNA hsa-miR-125b UNC45B miRanda miRanda
5705 chr17 33513591 33513591 1 + A C rs3744365 33513590 + 33513570 33513610 41 GTGTCTTAGACAGCGACCCTCAGGGATGCTGGGAGTGGTCC GTGTCTTAGACAGCGACCCTCCGGGATGCTGGGAGTGGTCC < 41bp 0.763999818520715 0.515872358867711 0.914926 0.8966898 prediction 0.496254919306007 Functional Loss - UNC45B ENSG00000141161 UTR3 Human protein_coding chr17:33513590 chr17:33513591 . . 0 22 hm5C_associated_SNPs_65907 0 0 0 2 33513579 33513595 mRNA hsa-miR-125a-5p UNC45B miRanda miRanda
5706 chr12 101381375 101381375 1 + G T LUAD 101381372 + 101381352 101381392 41 TACCTAAGAAGCCAATGAGGCTGGACAAGGAGACACTGCCA TACCTAAGAAGCCAATGAGGCTGTACAAGGAGACACTGCCA < 41bp 0.747865400592872 0.383422728483946 0.23686677 0.113258034 prediction 0.495730801185743 Functional Loss - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101381372 chr12:101381375 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65992 0 0 0 4 101381373 101381392 mRNA hsa-miR-34a ANO4 miRanda miRanda
5707 chr12 101381375 101381375 1 + G T LUAD 101381372 + 101381352 101381392 41 TACCTAAGAAGCCAATGAGGCTGGACAAGGAGACACTGCCA TACCTAAGAAGCCAATGAGGCTGTACAAGGAGACACTGCCA < 41bp 0.747865400592872 0.383422728483946 0.23686677 0.113258034 prediction 0.495730801185743 Functional Loss - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101381372 chr12:101381375 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65992 0 0 0 4 101381370 101381392 mRNA hsa-miR-34c-5p ANO4 miRanda miRanda
5708 chr12 101381375 101381375 1 + G T LUAD 101381372 + 101381352 101381392 41 TACCTAAGAAGCCAATGAGGCTGGACAAGGAGACACTGCCA TACCTAAGAAGCCAATGAGGCTGTACAAGGAGACACTGCCA < 41bp 0.747865400592872 0.383422728483946 0.23686677 0.113258034 prediction 0.495730801185743 Functional Loss - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101381372 chr12:101381375 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65992 0 0 0 4 101381371 101381392 mRNA hsa-miR-449a ANO4 miRanda miRanda
5709 chr12 101381375 101381375 1 + G T LUAD 101381372 + 101381352 101381392 41 TACCTAAGAAGCCAATGAGGCTGGACAAGGAGACACTGCCA TACCTAAGAAGCCAATGAGGCTGTACAAGGAGACACTGCCA < 41bp 0.747865400592872 0.383422728483946 0.23686677 0.113258034 prediction 0.495730801185743 Functional Loss - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101381372 chr12:101381375 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_65992 0 0 0 4 101381371 101381392 mRNA hsa-miR-449b ANO4 miRanda miRanda
5710 chr14 23078673 23078673 1 + G C GBM 23078669 + 23078649 23078689 41 GCCATGATGGAGTCCTTTGGCTGGGCCCGGCGCCCTATGCT GCCATGATGGAGTCCTTTGGCTGGCCCCGGCGCCCTATGCT < 41bp 0.837623226751098 0.590046235100599 0.67175233 0.3311662 prediction 0.495153983300998 Functional Loss - ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23078669 chr14:23078673 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_66092 0 0 0 1 23078672 23078692 mRNA hsa-miR-338-3p ABHD4 miRanda miRanda
5711 chr2 150325219 150325219 1 + C T UCEC 150325217 + 150325197 150325237 41 ACAGGAAACAGTATCTCAGTCACCAAACGCTGTGTCCCACT ACAGGAAACAGTATCTCAGTCATCAAACGCTGTGTCCCACT < 41bp 0.747565325707012 0.457561056685829 0.16541126 0.08156651 prediction 0.495130651414023 Functional Loss - LYPD6 ENSG00000187123 CDS Human protein_coding chr2:150325217 chr2:150325219 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_66098 0 0 1 1 150325199 150325220 mRNA hsa-miR-134 LYPD6 miRanda miRanda
5712 chr10 99211611 99211611 1 + C T UCEC 99211609 + 99211589 99211629 41 TCCTTTGGGGGCAGTGACACCGCTGTTGATGCTGCCTTTGA TCCTTTGGGGGCAGTGACACCGTTGTTGATGCTGCCTTTGA < 41bp 0.779309876414587 0.531838065827413 0.6658275 0.56648374 prediction 0.494943621174347 Functional Loss - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211609 chr10:99211611 nonsynonymous SNV 0.029 0 23 hm5C_associated_SNPs_66139 0 0 1 3 99211603 99211624 mRNA hsa-miR-103 ZDHHC16 miRanda miRanda
5713 chr10 99211611 99211611 1 + C T UCEC 99211609 + 99211589 99211629 41 TCCTTTGGGGGCAGTGACACCGCTGTTGATGCTGCCTTTGA TCCTTTGGGGGCAGTGACACCGTTGTTGATGCTGCCTTTGA < 41bp 0.779309876414587 0.531838065827413 0.6658275 0.56648374 prediction 0.494943621174347 Functional Loss - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211609 chr10:99211611 nonsynonymous SNV 0.029 0 23 hm5C_associated_SNPs_66139 0 0 1 3 99211603 99211624 mRNA hsa-miR-107 ZDHHC16 miRanda miRanda
5714 chr10 99211611 99211611 1 + C T UCEC 99211609 + 99211589 99211629 41 TCCTTTGGGGGCAGTGACACCGCTGTTGATGCTGCCTTTGA TCCTTTGGGGGCAGTGACACCGTTGTTGATGCTGCCTTTGA < 41bp 0.779309876414587 0.531838065827413 0.6658275 0.56648374 prediction 0.494943621174347 Functional Loss - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211609 chr10:99211611 nonsynonymous SNV 0.029 0 23 hm5C_associated_SNPs_66139 0 0 1 3 99211595 99211618 mRNA hsa-miR-421 ZDHHC16 miRanda miRanda
5715 chr1 150463934 150463934 1 + C T OV 150463932 + 150463912 150463952 41 CCAGGAACTTACAGCTGCTGCTCGACCCTTCCGGAGGCTAG CCAGGAACTTACAGCTGCTGCTTGACCCTTCCGGAGGCTAG < 41bp 0.747320304112818 0.466162711893533 0.034692258 0.026209265 prediction 0.494640608225636 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463932 chr1:150463934 stopgain 0.932 0 23 hm5C_associated_SNPs_66199 0 0 1 6 150463913 150463934 mRNA hsa-miR-15a TARS2 miRanda miRanda
5716 chr1 150463934 150463934 1 + C T OV 150463932 + 150463912 150463952 41 CCAGGAACTTACAGCTGCTGCTCGACCCTTCCGGAGGCTAG CCAGGAACTTACAGCTGCTGCTTGACCCTTCCGGAGGCTAG < 41bp 0.747320304112818 0.466162711893533 0.034692258 0.026209265 prediction 0.494640608225636 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463932 chr1:150463934 stopgain 0.932 0 23 hm5C_associated_SNPs_66199 0 0 1 6 150463910 150463934 mRNA hsa-miR-16 TARS2 miRanda miRanda
5717 chr1 150463934 150463934 1 + C T OV 150463932 + 150463912 150463952 41 CCAGGAACTTACAGCTGCTGCTCGACCCTTCCGGAGGCTAG CCAGGAACTTACAGCTGCTGCTTGACCCTTCCGGAGGCTAG < 41bp 0.747320304112818 0.466162711893533 0.034692258 0.026209265 prediction 0.494640608225636 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463932 chr1:150463934 stopgain 0.932 0 23 hm5C_associated_SNPs_66199 0 0 1 6 150463913 150463934 mRNA hsa-miR-15b TARS2 miRanda miRanda
5718 chr1 150463934 150463934 1 + C T OV 150463932 + 150463912 150463952 41 CCAGGAACTTACAGCTGCTGCTCGACCCTTCCGGAGGCTAG CCAGGAACTTACAGCTGCTGCTTGACCCTTCCGGAGGCTAG < 41bp 0.747320304112818 0.466162711893533 0.034692258 0.026209265 prediction 0.494640608225636 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463932 chr1:150463934 stopgain 0.932 0 23 hm5C_associated_SNPs_66199 0 0 1 6 150463913 150463934 mRNA hsa-miR-195 TARS2 miRanda miRanda
5719 chr1 150463934 150463934 1 + C T OV 150463932 + 150463912 150463952 41 CCAGGAACTTACAGCTGCTGCTCGACCCTTCCGGAGGCTAG CCAGGAACTTACAGCTGCTGCTTGACCCTTCCGGAGGCTAG < 41bp 0.747320304112818 0.466162711893533 0.034692258 0.026209265 prediction 0.494640608225636 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463932 chr1:150463934 stopgain 0.932 0 23 hm5C_associated_SNPs_66199 0 0 1 6 150463912 150463934 mRNA hsa-miR-424 TARS2 miRanda miRanda
5720 chr1 150463934 150463934 1 + C T OV 150463932 + 150463912 150463952 41 CCAGGAACTTACAGCTGCTGCTCGACCCTTCCGGAGGCTAG CCAGGAACTTACAGCTGCTGCTTGACCCTTCCGGAGGCTAG < 41bp 0.747320304112818 0.466162711893533 0.034692258 0.026209265 prediction 0.494640608225636 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150463932 chr1:150463934 stopgain 0.932 0 23 hm5C_associated_SNPs_66199 0 0 1 6 150463915 150463934 mRNA hsa-miR-497 TARS2 miRanda miRanda
5721 chr2 234363496 234363496 1 + C T UCEC 234363494 + 234363474 234363514 41 CCCTGGACTTTAACAACAAGCGCGATGAGCACCCAGAGAAG CCCTGGACTTTAACAACAAGCGTGATGAGCACCCAGAGAAG < 41bp 0.747263166123993 0.470224474478123 0.15431821 0.2447513 prediction 0.494526332247986 Functional Loss - DGKD ENSG00000077044 CDS Human protein_coding chr2:234363494 chr2:234363496 synonymous SNV . 0 23 hm5C_associated_SNPs_66217 0 0 1 2 234363491 234363512 mRNA hsa-miR-330-5p DGKD miRanda miRanda
5722 chr2 234363496 234363496 1 + C T UCEC 234363494 + 234363474 234363514 41 CCCTGGACTTTAACAACAAGCGCGATGAGCACCCAGAGAAG CCCTGGACTTTAACAACAAGCGTGATGAGCACCCAGAGAAG < 41bp 0.747263166123993 0.470224474478123 0.15431821 0.2447513 prediction 0.494526332247986 Functional Loss - DGKD ENSG00000077044 CDS Human protein_coding chr2:234363494 chr2:234363496 synonymous SNV . 0 23 hm5C_associated_SNPs_66217 0 0 1 2 234363494 234363512 mRNA hsa-miR-326 DGKD miRanda miRanda
5723 chr5 180657831 180657831 1 + G T UCEC 180657829 + 180657809 180657849 41 CAAGGAGGAGAGGCGAGTGACAGAACTGAAGGTGGGTGAAT CAAGGAGGAGAGGCGAGTGACATAACTGAAGGTGGGTGAAT < 41bp 0.747108351923529 0.416346165044932 0.41987538 0.28998065 prediction 0.494216703847058 Functional Loss - TRIM41 ENSG00000146063 CDS Human protein_coding chr5:180657829 chr5:180657831 stopgain 0.994 1 23 hm5C_associated_SNPs_66276 0 0 1 1 180657821 180657839 mRNA hsa-miR-149 TRIM41 miRanda miRanda
5724 chr20 18462387 18462387 1 + T C SKCM 18462386 + 18462366 18462406 41 GTGTAGATGGACACATGAAACTGTACAGGGCAGTCAATCCA GTGTAGATGGACACATGAAACCGTACAGGGCAGTCAATCCA < 41bp 0.770727183816504 0.523619679526639 0.11675498 0.041739136 prediction 0.494215008579731 Functional Loss - POLR3F ENSG00000132664 CDS Human protein_coding chr20:18462386 chr20:18462387 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_66277 0 0 1 2 18462374 18462395 mRNA hsa-miR-486-5p POLR3F miRanda miRanda
5725 chr20 18462387 18462387 1 + T C SKCM 18462386 + 18462366 18462406 41 GTGTAGATGGACACATGAAACTGTACAGGGCAGTCAATCCA GTGTAGATGGACACATGAAACCGTACAGGGCAGTCAATCCA < 41bp 0.770727183816504 0.523619679526639 0.11675498 0.041739136 prediction 0.494215008579731 Functional Loss - POLR3F ENSG00000132664 CDS Human protein_coding chr20:18462386 chr20:18462387 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_66277 0 0 1 2 18462377 18462398 mRNA hsa-miR-874 POLR3F miRanda miRanda
5726 chr6 126342315 126342315 1 + A T SKCM 126342311 + 126342291 126342331 41 CTGTTCTTTCTTCAGATACACTGAAGAGATGGTGCCTTGGC CTGTTCTTTCTTCAGATACACTGATGAGATGGTGCCTTGGC < 41bp 0.746914838854541 0.428074597166804 0.10919982 0.1850495 prediction 0.493829677709082 Functional Loss - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126342311 chr6:126342315 nonsynonymous SNV 0.975 2 25 hm5C_associated_SNPs_66344 0 0 1 2 126342310 126342329 mRNA hsa-miR-124 TRMT11 miRanda miRanda
5727 chr6 126342315 126342315 1 + A T SKCM 126342311 + 126342291 126342331 41 CTGTTCTTTCTTCAGATACACTGAAGAGATGGTGCCTTGGC CTGTTCTTTCTTCAGATACACTGATGAGATGGTGCCTTGGC < 41bp 0.746914838854541 0.428074597166804 0.10919982 0.1850495 prediction 0.493829677709082 Functional Loss - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126342311 chr6:126342315 nonsynonymous SNV 0.975 2 25 hm5C_associated_SNPs_66344 0 0 1 2 126342306 126342329 mRNA hsa-miR-506 TRMT11 miRanda miRanda
5728 chr8 23112792 23112792 1 + G T UCEC 23112790 + 23112770 23112810 41 AGGAGGTGTATCGTCTGTATCAGAACTCGCCCCTCTCCTCC AGGAGGTGTATCGTCTGTATCATAACTCGCCCCTCTCCTCC < 41bp 0.897188992202145 0.650274455445015 0.9379941 0.25349727 prediction 0.49382907351426 Functional Loss - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23112790 chr8:23112792 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_66345 0 0 1 1 23112788 23112811 mRNA hsa-miR-185 CHMP7 miRanda miRanda
5729 chr1 92604962 92604962 1 + G T HNSC 92604959 + 92604939 92604979 41 ATTTTATATATGGAGGAACTCTGGACATTCCAGACAAAACT ATTTTATATATGGAGGAACTCTGTACATTCCAGACAAAACT < 41bp 0.746847576062551 0.38900168982491 0.039329857 0.09123355 prediction 0.493695152125103 Functional Loss - BTBD8 ENSG00000189195 CDS Human protein_coding chr1:92604959 chr1:92604962 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_66368 0 0 0 3 92604950 92604970 mRNA hsa-miR-1 BTBD8 miRanda miRanda
5730 chr1 92604962 92604962 1 + G T HNSC 92604959 + 92604939 92604979 41 ATTTTATATATGGAGGAACTCTGGACATTCCAGACAAAACT ATTTTATATATGGAGGAACTCTGTACATTCCAGACAAAACT < 41bp 0.746847576062551 0.38900168982491 0.039329857 0.09123355 prediction 0.493695152125103 Functional Loss - BTBD8 ENSG00000189195 CDS Human protein_coding chr1:92604959 chr1:92604962 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_66368 0 0 0 3 92604950 92604970 mRNA hsa-miR-206 BTBD8 miRanda miRanda
5731 chr1 92604962 92604962 1 + G T HNSC 92604959 + 92604939 92604979 41 ATTTTATATATGGAGGAACTCTGGACATTCCAGACAAAACT ATTTTATATATGGAGGAACTCTGTACATTCCAGACAAAACT < 41bp 0.746847576062551 0.38900168982491 0.039329857 0.09123355 prediction 0.493695152125103 Functional Loss - BTBD8 ENSG00000189195 CDS Human protein_coding chr1:92604959 chr1:92604962 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_66368 0 0 0 3 92604948 92604970 mRNA hsa-miR-613 BTBD8 miRanda miRanda
5732 chr10 102738363 102738363 1 - G A CESC 102738365 - 102738345 102738385 41 GCATTGGTGTCTCCTCAGTTCTCAGGGAGTGTGGGTGGCGG GCATTGGTGTCTCCTCAGTTCTTAGGGAGTGTGGGTGGCGG < 41bp 0.746738247592033 0.499787193630501 0.2172311 0.24057907 prediction 0.493476495184067 Functional Loss - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102738365 chr10:102738363 synonymous SNV . 0 23 hm5C_associated_SNPs_66409 0 0 0 4 102738358 102738379 mRNA hsa-miR-125b MRPL43 miRanda miRanda
5733 chr10 102738363 102738363 1 - G A CESC 102738365 - 102738345 102738385 41 GCATTGGTGTCTCCTCAGTTCTCAGGGAGTGTGGGTGGCGG GCATTGGTGTCTCCTCAGTTCTTAGGGAGTGTGGGTGGCGG < 41bp 0.746738247592033 0.499787193630501 0.2172311 0.24057907 prediction 0.493476495184067 Functional Loss - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102738365 chr10:102738363 synonymous SNV . 0 23 hm5C_associated_SNPs_66409 0 0 0 4 102738358 102738381 mRNA hsa-miR-125a-5p MRPL43 miRanda miRanda
5734 chr10 102738363 102738363 1 - G A CESC 102738365 - 102738345 102738385 41 GCATTGGTGTCTCCTCAGTTCTCAGGGAGTGTGGGTGGCGG GCATTGGTGTCTCCTCAGTTCTTAGGGAGTGTGGGTGGCGG < 41bp 0.746738247592033 0.499787193630501 0.2172311 0.24057907 prediction 0.493476495184067 Functional Loss - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102738365 chr10:102738363 synonymous SNV . 0 23 hm5C_associated_SNPs_66409 0 0 0 4 102738362 102738383 mRNA hsa-miR-146a MRPL43 miRanda miRanda
5735 chr10 102738363 102738363 1 - G A CESC 102738365 - 102738345 102738385 41 GCATTGGTGTCTCCTCAGTTCTCAGGGAGTGTGGGTGGCGG GCATTGGTGTCTCCTCAGTTCTTAGGGAGTGTGGGTGGCGG < 41bp 0.746738247592033 0.499787193630501 0.2172311 0.24057907 prediction 0.493476495184067 Functional Loss - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102738365 chr10:102738363 synonymous SNV . 0 23 hm5C_associated_SNPs_66409 0 0 0 4 102738362 102738383 mRNA hsa-miR-146b-5p MRPL43 miRanda miRanda
5736 chr14 104198969 104198969 1 + G A UCEC 104198966 + 104198946 104198986 41 CTCTCCTCCAGGAGGCAACGCACGGGCCACAGGCATGTTCC CTCTCCTCCAGGAGGCAACGCACAGGCCACAGGCATGTTCC < 41bp 0.755148924271565 0.508412336815201 0.30838984 0.14940247 prediction 0.493473174912729 Functional Loss - ZFYVE21 ENSG00000100711 CDS Human protein_coding chr14:104198966 chr14:104198969 nonsynonymous SNV 0.782 3 24 hm5C_associated_SNPs_66410 0 0 1 1 104198967 104198989 mRNA hsa-miR-873 ZFYVE21 miRanda miRanda
5737 chr8 133829707 133829707 1 + G T LUAD 133829705 + 133829685 133829725 41 TCTTACCGTAATGAATGTCCCAGGGCAGAAAAAGAGGATAC TCTTACCGTAATGAATGTCCCATGGCAGAAAAAGAGGATAC < 41bp 0.746530104791027 0.405761404257994 0.7664008 0.16842622 prediction 0.493060209582054 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133829705 chr8:133829707 nonsynonymous SNV 0.983 1 23 hm5C_associated_SNPs_66498 0 0 1 2 133829701 133829723 mRNA hsa-miR-211 PHF20L1 miRanda miRanda
5738 chr8 133829707 133829707 1 + G T LUAD 133829705 + 133829685 133829725 41 TCTTACCGTAATGAATGTCCCAGGGCAGAAAAAGAGGATAC TCTTACCGTAATGAATGTCCCATGGCAGAAAAAGAGGATAC < 41bp 0.746530104791027 0.405761404257994 0.7664008 0.16842622 prediction 0.493060209582054 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133829705 chr8:133829707 nonsynonymous SNV 0.983 1 23 hm5C_associated_SNPs_66498 0 0 1 2 133829691 133829712 mRNA hsa-miR-874 PHF20L1 miRanda miRanda
5739 chr1 25655545 25655545 1 + G T SKCM 25655543 + 25655523 25655563 41 GTTCGCGCAGGCACTGGAGTCAGAGAAAATGGAGTTGAATC GTTCGCGCAGGCACTGGAGTCATAGAAAATGGAGTTGAATC < 41bp 0.746427056327992 0.404349162535372 0.7290508 0.18071753 prediction 0.492854112655985 Functional Loss - RHD ENSG00000187010 CDS Human protein_coding chr1:25655543 chr1:25655545 nonsynonymous SNV 0.072 1 23 hm5C_associated_SNPs_66535 0 0 0 1 25655535 25655557 mRNA hsa-miR-136 RHD miRanda miRanda
5740 chr20 34618541 34618541 1 + C T CESC 34618539 + 34618519 34618559 41 TGTCCAAGCCATCAAAGCACCTCGGTACAAAATCCGAGAAC TGTCCAAGCCATCAAAGCACCTTGGTACAAAATCCGAGAAC < 41bp 0.757438785761594 0.511016781748815 0.24749729 0.17252198 prediction 0.492844008025559 Functional Loss - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34618539 chr20:34618541 nonsynonymous SNV 0.989 3 23 hm5C_associated_SNPs_66538 0 0 0 1 34618526 34618548 mRNA hsa-miR-126 C20orf152 miRanda miRanda
5741 chr16 31765937 31765937 1 + G T UCEC 31765934 + 31765914 31765954 41 TCCATCAGAGTATCTTTATTCAAGAGAAGTCTGCCAAATGT TCCATCAGAGTATCTTTATTCAATAGAAGTCTGCCAAATGT < 41bp 0.746402998385047 0.380777845614643 0.3181947 0.15849066 prediction 0.492805996770094 Functional Loss - ZNF720 ENSG00000197302 CDS Human protein_coding chr16:31765934 chr16:31765937 stopgain . 0 24 hm5C_associated_SNPs_66550 0 0 0 3 31765929 31765951 mRNA hsa-miR-96 ZNF720 miRanda miRanda
5742 chr16 31765937 31765937 1 + G T UCEC 31765934 + 31765914 31765954 41 TCCATCAGAGTATCTTTATTCAAGAGAAGTCTGCCAAATGT TCCATCAGAGTATCTTTATTCAATAGAAGTCTGCCAAATGT < 41bp 0.746402998385047 0.380777845614643 0.3181947 0.15849066 prediction 0.492805996770094 Functional Loss - ZNF720 ENSG00000197302 CDS Human protein_coding chr16:31765934 chr16:31765937 stopgain . 0 24 hm5C_associated_SNPs_66550 0 0 0 3 31765928 31765951 mRNA hsa-miR-182 ZNF720 miRanda miRanda
5743 chr16 31765937 31765937 1 + G T UCEC 31765934 + 31765914 31765954 41 TCCATCAGAGTATCTTTATTCAAGAGAAGTCTGCCAAATGT TCCATCAGAGTATCTTTATTCAATAGAAGTCTGCCAAATGT < 41bp 0.746402998385047 0.380777845614643 0.3181947 0.15849066 prediction 0.492805996770094 Functional Loss - ZNF720 ENSG00000197302 CDS Human protein_coding chr16:31765934 chr16:31765937 stopgain . 0 24 hm5C_associated_SNPs_66550 0 0 0 3 31765930 31765951 mRNA hsa-miR-1271 ZNF720 miRanda miRanda
5744 chr9 2652886 2652886 1 + T C COAD 2652885 + 2652865 2652905 41 TCCTGTGTACTTGAAAACCACTGAAGAGGACCTCTCCATAG TCCTGTGTACTTGAAAACCACCGAAGAGGACCTCTCCATAG < 41bp 0.754010877469155 0.507661198354891 0.12072101 0.031265616 prediction 0.492699358228528 Functional Loss - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2652885 chr9:2652886 synonymous SNV . 0 22 hm5C_associated_SNPs_66576 0 0 1 1 2652866 2652887 mRNA hsa-miR-140-5p VLDLR miRanda miRanda
5745 chr5 179155759 179155759 1 + C T rs189975498 179155757 + 179155737 179155777 41 TTCAGAAAACTTCAAGACATCACCATCAGCAGGCTCCAGTT TTCAGAAAACTTCAAGACATCATCATCAGCAGGCTCCAGTT < 41bp 0.785965967326489 0.539770191525552 0.004278451 0.0041168034 prediction 0.492391551601875 Functional Loss - CANX ENSG00000127022 UTR3 Human protein_coding chr5:179155757 chr5:179155759 . . 0 23 hm5C_associated_SNPs_66639 0 0 1 1 179155748 179155770 mRNA hsa-miR-370 CANX miRanda miRanda
5746 chr6 39033500 39033500 1 + C T rs144122530 39033498 + 39033478 39033518 41 CCACCCCAGTGCCGCAGGGCCACGTGTACCGGTTCTGCACA CCACCCCAGTGCCGCAGGGCCATGTGTACCGGTTCTGCACA < 41bp 0.746192883516018 0.481511700555931 0.13574523 0.16153026 prediction 0.492385767032036 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39033498 chr6:39033500 synonymous SNV . 0 23 hm5C_associated_SNPs_66642 0 0 0 2 39033495 39033518 mRNA hsa-miR-19a GLP1R miRanda miRanda
5747 chr6 39033500 39033500 1 + C T rs144122530 39033498 + 39033478 39033518 41 CCACCCCAGTGCCGCAGGGCCACGTGTACCGGTTCTGCACA CCACCCCAGTGCCGCAGGGCCATGTGTACCGGTTCTGCACA < 41bp 0.746192883516018 0.481511700555931 0.13574523 0.16153026 prediction 0.492385767032036 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39033498 chr6:39033500 synonymous SNV . 0 23 hm5C_associated_SNPs_66642 0 0 0 2 39033495 39033518 mRNA hsa-miR-19b GLP1R miRanda miRanda
5748 chr3 195452814 195452814 1 + C T BRCA 195452812 + 195452792 195452832 41 TCAGACACAGATCTCATCCCCACGGAAGGGGTGAAGGCCTC TCAGACACAGATCTCATCCCCATGGAAGGGGTGAAGGCCTC < 41bp 0.775846567627251 0.53000387530981 0.11350861 0.13467893 prediction 0.491685384634881 Functional Loss - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195452812 chr3:195452814 nonsynonymous SNV 0.005 3 23 hm5C_associated_SNPs_66782 0 0 0 1 195452794 195452815 mRNA hsa-miR-491-5p MUC20 miRanda miRanda
5749 chrX 48436742 48436742 1 + C T rs782250316 48436740 + 48436720 48436760 41 GGGGGCAGAGGTGGGCGGATCACCTGAGGTCAGGAGTTCGA GGGGGCAGAGGTGGGCGGATCATCTGAGGTCAGGAGTTCGA < 41bp 0.747002469382188 0.501167564471044 0.6459438 0.5893773 prediction 0.491669809822288 Functional Loss - RBM3 ENSG00000102317 UTR3 Human protein_coding chrX:48436740 chrX:48436742 . . 0 23 hm5C_associated_SNPs_66787 0 0 1 1 48436725 48436746 mRNA hsa-miR-125a-3p RBM3 miRanda miRanda
5750 chr8 80577088 80577088 1 + C T LUAD 80577086 + 80577066 80577106 41 AGGTGCGCAGGAACAAGGAACTCCAGGTTGAACTGTCTGGC AGGTGCGCAGGAACAAGGAACTTCAGGTTGAACTGTCTGGC < 41bp 0.745830308026387 0.465122125878619 0.37796456 0.24389395 prediction 0.491660616052775 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80577086 chr8:80577088 synonymous SNV . 0 23 hm5C_associated_SNPs_66788 0 0 0 3 80577080 80577102 mRNA hsa-miR-181a STMN2 miRanda miRanda
5751 chr8 80577088 80577088 1 + C T LUAD 80577086 + 80577066 80577106 41 AGGTGCGCAGGAACAAGGAACTCCAGGTTGAACTGTCTGGC AGGTGCGCAGGAACAAGGAACTTCAGGTTGAACTGTCTGGC < 41bp 0.745830308026387 0.465122125878619 0.37796456 0.24389395 prediction 0.491660616052775 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80577086 chr8:80577088 synonymous SNV . 0 23 hm5C_associated_SNPs_66788 0 0 0 3 80577080 80577102 mRNA hsa-miR-181c STMN2 miRanda miRanda
5752 chr8 80577088 80577088 1 + C T LUAD 80577086 + 80577066 80577106 41 AGGTGCGCAGGAACAAGGAACTCCAGGTTGAACTGTCTGGC AGGTGCGCAGGAACAAGGAACTTCAGGTTGAACTGTCTGGC < 41bp 0.745830308026387 0.465122125878619 0.37796456 0.24389395 prediction 0.491660616052775 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80577086 chr8:80577088 synonymous SNV . 0 23 hm5C_associated_SNPs_66788 0 0 0 3 80577076 80577095 mRNA hsa-miR-490-3p STMN2 miRanda miRanda
5753 chr1 186280656 186280656 1 + G T LUAD 186280654 + 186280634 186280674 41 CAAAGGATTTGGAGGACTAACTGGACAAATAGTGGCAGCGC CAAAGGATTTGGAGGACTAACTTGACAAATAGTGGCAGCGC < 41bp 0.875088977527744 0.629296323116414 0.44908655 0.23574767 prediction 0.491585308822659 Functional Loss - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186280654 chr1:186280656 stopgain 0.979 1 23 hm5C_associated_SNPs_66793 0 0 0 1 186280636 186280659 mRNA hsa-miR-145 PRG4 miRanda miRanda
5754 chr16 71674726 71674726 1 + C T STAD 71674724 + 71674704 71674744 41 CAAGAGAGAGGCTCTATGCCCGCAAGGGTCTCACCTGGATG CAAGAGAGAGGCTCTATGCCCGTAAGGGTCTCACCTGGATG < 41bp 0.745750289705762 0.493478387718644 0.25523937 0.21554908 prediction 0.491500579411523 Functional Loss - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71674724 chr16:71674726 synonymous SNV . 0 23 hm5C_associated_SNPs_66808 0 0 0 1 71674720 71674741 mRNA hsa-miR-125a-3p MARVELD3 miRanda miRanda
5755 chr11 118486878 118486878 1 + T C LIHC 118486877 + 118486857 118486897 41 CTCTACCCCTGTGGCAATGCCTGCACTATTGATGGGCTCCC CTCTACCCCTGTGGCAATGCCCGCACTATTGATGGGCTCCC < 41bp 0.76947302522332 0.523772506341361 0.13114041 0.106940866 prediction 0.491401037763919 Functional Loss - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118486877 chr11:118486878 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_66826 0 0 1 2 118486857 118486881 mRNA hsa-miR-103 PHLDB1 miRanda miRanda
5756 chr11 118486878 118486878 1 + T C LIHC 118486877 + 118486857 118486897 41 CTCTACCCCTGTGGCAATGCCTGCACTATTGATGGGCTCCC CTCTACCCCTGTGGCAATGCCCGCACTATTGATGGGCTCCC < 41bp 0.76947302522332 0.523772506341361 0.13114041 0.106940866 prediction 0.491401037763919 Functional Loss - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118486877 chr11:118486878 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_66826 0 0 1 2 118486857 118486881 mRNA hsa-miR-107 PHLDB1 miRanda miRanda
5757 chr1 203830822 203830822 1 + A C STAD 203830818 + 203830798 203830838 41 GTGGCCAGGGTCAGAAAGTGCAGAAGGTTATGGTGCAGCCC GTGGCCAGGGTCAGAAAGTGCAGACGGTTATGGTGCAGCCC < 41bp 0.848957567312282 0.603353896326398 0.89107704 0.8900465 prediction 0.491207341971768 Functional Loss - SNRPE ENSG00000182004 CDS Human protein_coding chr1:203830818 chr1:203830822 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_66875 0 0 1 1 203830802 203830823 mRNA hsa-miR-544 SNRPE miRanda miRanda
5758 chr22 21363670 21363670 1 + C T UCEC 21363668 + 21363648 21363688 41 AGCCGCTTCATGAGCAGAGACACGAACCCAGAGCCAGTGCC AGCCGCTTCATGAGCAGAGACATGAACCCAGAGCCAGTGCC < 41bp 0.754523684486067 0.509165724682582 0.035729647 0.05918148 prediction 0.49071591960697 Functional Loss - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363668 chr22:21363670 . . 0 23 hm5C_associated_SNPs_66961 0 0 0 4 21363649 21363672 mRNA hsa-miR-187 FLJ39582 miRanda miRanda
5759 chr22 21363670 21363670 1 + C T UCEC 21363668 + 21363648 21363688 41 AGCCGCTTCATGAGCAGAGACACGAACCCAGAGCCAGTGCC AGCCGCTTCATGAGCAGAGACATGAACCCAGAGCCAGTGCC < 41bp 0.754523684486067 0.509165724682582 0.035729647 0.05918148 prediction 0.49071591960697 Functional Loss - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363668 chr22:21363670 . . 0 23 hm5C_associated_SNPs_66961 0 0 0 4 21363662 21363685 mRNA hsa-miR-149 FLJ39582 miRanda miRanda
5760 chr22 21363670 21363670 1 + C T UCEC 21363668 + 21363648 21363688 41 AGCCGCTTCATGAGCAGAGACACGAACCCAGAGCCAGTGCC AGCCGCTTCATGAGCAGAGACATGAACCCAGAGCCAGTGCC < 41bp 0.754523684486067 0.509165724682582 0.035729647 0.05918148 prediction 0.49071591960697 Functional Loss - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363668 chr22:21363670 . . 0 23 hm5C_associated_SNPs_66961 0 0 0 4 21363660 21363681 mRNA hsa-miR-330-5p FLJ39582 miRanda miRanda
5761 chr22 21363670 21363670 1 + C T UCEC 21363668 + 21363648 21363688 41 AGCCGCTTCATGAGCAGAGACACGAACCCAGAGCCAGTGCC AGCCGCTTCATGAGCAGAGACATGAACCCAGAGCCAGTGCC < 41bp 0.754523684486067 0.509165724682582 0.035729647 0.05918148 prediction 0.49071591960697 Functional Loss - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363668 chr22:21363670 . . 0 23 hm5C_associated_SNPs_66961 0 0 0 4 21363661 21363681 mRNA hsa-miR-326 FLJ39582 miRanda miRanda
5762 chr7 89912362 89912362 1 + A T CESC 89912358 + 89912338 89912378 41 TTTGTGAAAAGGGAACAATTCAGCAAATGATAGGTAAAATA TTTGTGAAAAGGGAACAATTCAGCTAATGATAGGTAAAATA < 41bp 0.745333679939705 0.41814313304495 0.20173106 0.07718718 prediction 0.490667359879411 Functional Loss - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89912358 chr7:89912362 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_66972 0 0 0 1 89912343 89912365 mRNA hsa-miR-450a C7orf63 miRanda miRanda
5763 chr19 42083748 42083748 1 + C T COAD 42083746 + 42083726 42083766 41 CAGCATATGTAATAGACACTCACGTTAGGACTCCAGGGCCT CAGCATATGTAATAGACACTCATGTTAGGACTCCAGGGCCT < 41bp 0.778773368734383 0.533624974136789 0.1365228 0.27565843 prediction 0.490296789195188 Functional Loss - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42083746 chr19:42083748 synonymous SNV . 0 23 hm5C_associated_SNPs_67038 0 0 0 3 42083743 42083764 mRNA hsa-miR-125b CEACAM21 miRanda miRanda
5764 chr19 42083748 42083748 1 + C T COAD 42083746 + 42083726 42083766 41 CAGCATATGTAATAGACACTCACGTTAGGACTCCAGGGCCT CAGCATATGTAATAGACACTCATGTTAGGACTCCAGGGCCT < 41bp 0.778773368734383 0.533624974136789 0.1365228 0.27565843 prediction 0.490296789195188 Functional Loss - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42083746 chr19:42083748 synonymous SNV . 0 23 hm5C_associated_SNPs_67038 0 0 0 3 42083727 42083749 mRNA hsa-miR-142-3p CEACAM21 miRanda miRanda
5765 chr19 42083748 42083748 1 + C T COAD 42083746 + 42083726 42083766 41 CAGCATATGTAATAGACACTCACGTTAGGACTCCAGGGCCT CAGCATATGTAATAGACACTCATGTTAGGACTCCAGGGCCT < 41bp 0.778773368734383 0.533624974136789 0.1365228 0.27565843 prediction 0.490296789195188 Functional Loss - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42083746 chr19:42083748 synonymous SNV . 0 23 hm5C_associated_SNPs_67038 0 0 0 3 42083743 42083764 mRNA hsa-miR-125a-5p CEACAM21 miRanda miRanda
5766 chr11 63071614 63071614 1 + G T LUSC 63071612 + 63071592 63071632 41 TGCGTGTGGCTTTGGCATGTCTGGGAATCGGCTGTTCTGCT TGCGTGTGGCTTTGGCATGTCTTGGAATCGGCTGTTCTGCT < 41bp 0.744684817275145 0.39869332293329 0.60979825 0.19214362 prediction 0.48936963455029 Functional Loss - SLC22A10 ENSG00000184999 CDS Human protein_coding chr11:63071612 chr11:63071614 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_67190 0 0 0 3 63071613 63071636 mRNA hsa-miR-15a SLC22A10 miRanda miRanda
5767 chr11 63071614 63071614 1 + G T LUSC 63071612 + 63071592 63071632 41 TGCGTGTGGCTTTGGCATGTCTGGGAATCGGCTGTTCTGCT TGCGTGTGGCTTTGGCATGTCTTGGAATCGGCTGTTCTGCT < 41bp 0.744684817275145 0.39869332293329 0.60979825 0.19214362 prediction 0.48936963455029 Functional Loss - SLC22A10 ENSG00000184999 CDS Human protein_coding chr11:63071612 chr11:63071614 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_67190 0 0 0 3 63071613 63071636 mRNA hsa-miR-15b SLC22A10 miRanda miRanda
5768 chr11 63071614 63071614 1 + G T LUSC 63071612 + 63071592 63071632 41 TGCGTGTGGCTTTGGCATGTCTGGGAATCGGCTGTTCTGCT TGCGTGTGGCTTTGGCATGTCTTGGAATCGGCTGTTCTGCT < 41bp 0.744684817275145 0.39869332293329 0.60979825 0.19214362 prediction 0.48936963455029 Functional Loss - SLC22A10 ENSG00000184999 CDS Human protein_coding chr11:63071612 chr11:63071614 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_67190 0 0 0 3 63071613 63071636 mRNA hsa-miR-424 SLC22A10 miRanda miRanda
5769 chr20 43566728 43566728 1 + G A HNSC 43566725 + 43566705 43566745 41 AGCGTCTCTACCCCCTTATCCATGATGTCCACACCCAGCTG AGCGTCTCTACCCCCTTATCCATAATGTCCACACCCAGCTG < 41bp 0.768305565683187 0.523657559629713 0.08977181 0.060720205 prediction 0.489296012106946 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43566725 chr20:43566728 nonsynonymous SNV 0.078 0 24 hm5C_associated_SNPs_67199 0 0 1 1 43566722 43566744 mRNA hsa-miR-138 PABPC1L miRanda miRanda
5770 chr1 46033700 46033700 1 + T C STAD 46033699 + 46033679 46033719 41 AATGCTGATGGGACTATATGCTACGACTCCACCCACTACAA AATGCTGATGGGACTATATGCCACGACTCCACCCACTACAA < 41bp 0.758005375745513 0.513423967052912 0.05785033 0.027264714 prediction 0.489162817385202 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46033699 chr1:46033700 nonsynonymous SNV 0.434 1 22 hm5C_associated_SNPs_67231 0 0 1 1 46033686 46033709 mRNA hsa-miR-122 AKR1A1 miRanda miRanda
5771 chr17 76161652 76161652 1 + G C rs555145060 76161648 + 76161628 76161668 41 AATCTCAGCACTTTGGGAGGCTGAGGCAGGCGAATCACCTG AATCTCAGCACTTTGGGAGGCTGACGCAGGCGAATCACCTG < 41bp 0.745185912558279 0.500724065201258 0.9278319 0.91194713 prediction 0.488923694714042 Functional Loss - C17orf99 ENSG00000187997 intronic Human protein_coding chr17:76161648 chr17:76161652 . . 0 25 hm5C_associated_SNPs_67279 0 0 0 1 76161648 76161669 mRNA hsa-miR-125a-3p C17orf99 miRanda miRanda
5772 chr4 20706381 20706381 1 + G T LUSC 20706379 + 20706359 20706399 41 GTCAACCAGTTCTCCAGAGTCTGCAAGAAAACTTCATCCTA GTCAACCAGTTCTCCAGAGTCTTCAAGAAAACTTCATCCTA < 41bp 0.841975930491816 0.597527223357544 0.67233014 0.6455047 prediction 0.488897414268544 Functional Loss - PACRGL ENSG00000163138 CDS Human protein_coding chr4:20706379 chr4:20706381 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_67287 0 0 1 1 20706368 20706388 mRNA hsa-miR-431 PACRGL miRanda miRanda
5773 chr6 32609299 32609299 1 + A C LIHC 32609298 + 32609278 32609318 41 GCAAAACACAACTTGAACATCATGATTAAACGCTACAACTC GCAAAACACAACTTGAACATCCTGATTAAACGCTACAACTC < 41bp 0.78043030054935 0.5362838419521 0.1039297 0.08523238 prediction 0.488292917194501 Functional Loss - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32609298 chr6:32609299 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_67416 0 0 0 1 32609282 32609303 mRNA hsa-miR-433 HLA-DQA1 miRanda miRanda
5774 chr22 19006248 19006248 1 + G T rs560032107 19006245 + 19006225 19006265 41 CTGTGCATCCCCGGTGCCCTCAGGAACCCTTCTCTGATCAT CTGTGCATCCCCGGTGCCCTCAGTAACCCTTCTCTGATCAT < 41bp 0.744097560814757 0.377072051227275 0.90346235 0.08545828 prediction 0.488195121629514 Functional Loss - DGCR9 ENSG00000270393;ENSG00000273032 ncRNA_exonic Human other chr22:19006245 chr22:19006248 . . 0 24 hm5C_associated_SNPs_67438 0 0 0 1 19006242 19006264 mRNA hsa-miR-383 DGCR9 miRanda miRanda
5775 chr3 33425643 33425643 1 + G T HNSC 33425640 + 33425620 33425660 41 ACTGCCGAGGCCTGGAGCGCCTCGAGCTGTACGACTGCCAG ACTGCCGAGGCCTGGAGCGCCTCTAGCTGTACGACTGCCAG < 41bp 0.908455181638927 0.664384336164616 0.7108051 0.66034317 prediction 0.488141690948622 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33425640 chr3:33425643 stopgain 0.982 1 24 hm5C_associated_SNPs_67454 0 0 0 4 33425637 33425659 mRNA hsa-miR-34c-5p FBXL2 miRanda miRanda
5776 chr3 33425643 33425643 1 + G T HNSC 33425640 + 33425620 33425660 41 ACTGCCGAGGCCTGGAGCGCCTCGAGCTGTACGACTGCCAG ACTGCCGAGGCCTGGAGCGCCTCTAGCTGTACGACTGCCAG < 41bp 0.908455181638927 0.664384336164616 0.7108051 0.66034317 prediction 0.488141690948622 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33425640 chr3:33425643 stopgain 0.982 1 24 hm5C_associated_SNPs_67454 0 0 0 4 33425643 33425665 mRNA hsa-miR-370 FBXL2 miRanda miRanda
5777 chr3 33425643 33425643 1 + G T HNSC 33425640 + 33425620 33425660 41 ACTGCCGAGGCCTGGAGCGCCTCGAGCTGTACGACTGCCAG ACTGCCGAGGCCTGGAGCGCCTCTAGCTGTACGACTGCCAG < 41bp 0.908455181638927 0.664384336164616 0.7108051 0.66034317 prediction 0.488141690948622 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33425640 chr3:33425643 stopgain 0.982 1 24 hm5C_associated_SNPs_67454 0 0 0 4 33425637 33425659 mRNA hsa-miR-449a FBXL2 miRanda miRanda
5778 chr3 33425643 33425643 1 + G T HNSC 33425640 + 33425620 33425660 41 ACTGCCGAGGCCTGGAGCGCCTCGAGCTGTACGACTGCCAG ACTGCCGAGGCCTGGAGCGCCTCTAGCTGTACGACTGCCAG < 41bp 0.908455181638927 0.664384336164616 0.7108051 0.66034317 prediction 0.488141690948622 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33425640 chr3:33425643 stopgain 0.982 1 24 hm5C_associated_SNPs_67454 0 0 0 4 33425637 33425659 mRNA hsa-miR-449b FBXL2 miRanda miRanda
5779 chr8 92401613 92401613 1 + G T LUSC 92401610 + 92401590 92401630 41 ATGAGAAGTGTTATTTAATCCTGGATTGCAGTGGATTTACC ATGAGAAGTGTTATTTAATCCTGTATTGCAGTGGATTTACC < 41bp 0.744000730476525 0.381580382429682 0.31335202 0.31344903 prediction 0.488001460953051 Functional Loss - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92401610 chr8:92401613 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_67483 0 0 1 1 92401599 92401622 mRNA hsa-miR-217 SLC26A7 miRanda miRanda
5780 chr8 92401612 92401612 1 + G T LUSC 92401610 + 92401590 92401630 41 ATGAGAAGTGTTATTTAATCCTGGATTGCAGTGGATTTACC ATGAGAAGTGTTATTTAATCCTTGATTGCAGTGGATTTACC < 41bp 0.744000730476525 0.425222980199697 0.31335202 0.104470134 prediction 0.488001460953051 Functional Loss - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92401610 chr8:92401612 synonymous SNV . 0 23 hm5C_associated_SNPs_67484 0 0 0 1 92401599 92401622 mRNA hsa-miR-217 SLC26A7 miRanda miRanda
5781 chr11 85989563 85989563 1 + G C BLCA 85989562 + 85989542 85989582 41 TTTGGCGCTGGGATCGACTTCGATAAAATACTTTTGCCTAA TTTGGCGCTGGGATCGACTTCCATAAAATACTTTTGCCTAA < 41bp 0.743955724507102 0.481009451193296 0.1775944 0.23843592 prediction 0.487911449014204 Functional Loss - EED ENSG00000074266 CDS Human protein_coding chr11:85989562 chr11:85989563 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_67499 0 0 1 2 85989559 85989582 mRNA hsa-miR-182 EED miRanda miRanda
5782 chr11 85989563 85989563 1 + G C BLCA 85989562 + 85989542 85989582 41 TTTGGCGCTGGGATCGACTTCGATAAAATACTTTTGCCTAA TTTGGCGCTGGGATCGACTTCCATAAAATACTTTTGCCTAA < 41bp 0.743955724507102 0.481009451193296 0.1775944 0.23843592 prediction 0.487911449014204 Functional Loss - EED ENSG00000074266 CDS Human protein_coding chr11:85989562 chr11:85989563 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_67499 0 0 1 2 85989552 85989572 mRNA hsa-miR-590-3p EED miRanda miRanda
5783 chr9 84532880 84532880 1 + G T LUSC 84532878 + 84532858 84532898 41 CCTCAGCCAGCTTTATTTCTCAGGGAGATTCCAAAGATGGG CCTCAGCCAGCTTTATTTCTCATGGAGATTCCAAAGATGGG < 41bp 0.743883798312462 0.434413636522589 0.9377956 0.3747216 prediction 0.487767596624924 Functional Loss - SPATA31D5P ENSG00000240632 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:84532878 chr9:84532880 . . 0 23 hm5C_associated_SNPs_67532 0 0 0 2 84532862 84532883 mRNA hsa-miR-125b FLJ43950 miRanda miRanda
5784 chr9 84532880 84532880 1 + G T LUSC 84532878 + 84532858 84532898 41 CCTCAGCCAGCTTTATTTCTCAGGGAGATTCCAAAGATGGG CCTCAGCCAGCTTTATTTCTCATGGAGATTCCAAAGATGGG < 41bp 0.743883798312462 0.434413636522589 0.9377956 0.3747216 prediction 0.487767596624924 Functional Loss - SPATA31D5P ENSG00000240632 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:84532878 chr9:84532880 . . 0 23 hm5C_associated_SNPs_67532 0 0 0 2 84532862 84532883 mRNA hsa-miR-125a-5p FLJ43950 miRanda miRanda
5785 chrX 101823473 101823473 1 + G T UCEC 101823470 + 101823450 101823490 41 CTACCCTCTCCCAGAAGCAGCAGGAAATGGTGGAGACTGTC CTACCCTCTCCCAGAAGCAGCAGTAAATGGTGGAGACTGTC < 41bp 0.743809083739628 0.350995725471775 0.40357378 0.3003869 prediction 0.487618167479255 Functional Loss - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101823470 chrX:101823473 . . 0 24 hm5C_associated_SNPs_67563 0 0 0 1 101823453 101823474 mRNA hsa-miR-370 NXF4 miRanda miRanda
5786 chr11 6292420 6292420 1 + G A UCEC 6292417 + 6292397 6292437 41 CCAAGCTGCTGGCTAAGAAGCGCGTGGTGCGAATGTTGCTG CCAAGCTGCTGGCTAAGAAGCGCATGGTGCGAATGTTGCTG < 41bp 0.751495912371213 0.50771027630298 0.36015433 0.216557 prediction 0.487571272136466 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6292417 chr11:6292420 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_67577 0 0 0 1 6292411 6292434 mRNA hsa-miR-543 CCKBR miRanda miRanda
5787 chr1 67861641 67861641 1 + G T COAD 67861638 + 67861618 67861658 41 AGGCACCTCTCGCTGACTCTCTGGAAGAACTGGAGCCTCAG AGGCACCTCTCGCTGACTCTCTGTAAGAACTGGAGCCTCAG < 41bp 0.916384738254038 0.672800603674969 0.8105899 0.077041626 prediction 0.487168269158138 Functional Loss - IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67861638 chr1:67861641 stopgain 0.095 1 24 hm5C_associated_SNPs_67653 0 0 0 1 67861633 67861655 mRNA hsa-miR-24 IL12RB2 miRanda miRanda
5788 chr15 31233821 31233821 1 - G A UCEC 31233823 - 31233803 31233843 41 GGCCCTCACCACACCGACACCTCGGGGACACCGGAGTTTCT GGCCCTCACCACACCGACACCTTGGGGACACCGGAGTTTCT < 41bp 0.743509743658441 0.49527601267734 0.017413259 0.03834474 prediction 0.487019487316882 Functional Loss - MTMR10 ENSG00000166912 CDS Human protein_coding chr15:31233823 chr15:31233821 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_67682 0 0 0 1 31233798 31233821 mRNA hsa-miR-185 MTMR10 miRanda miRanda
5789 chr11 977185 977185 1 + G T LUAD 977182 + 977162 977202 41 GATCTTGTCCCCATGGGCGACTGGACATCCCGAGTGGTGCA GATCTTGTCCCCATGGGCGACTGTACATCCCGAGTGGTGCA < 41bp 0.743499189207574 0.350262060458186 0.19145525 0.19000018 prediction 0.486998378415147 Functional Loss - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:977182 chr11:977185 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_67691 0 0 1 2 977185 977207 mRNA hsa-miR-148a AP2A2 miRanda miRanda
5790 chr11 977185 977185 1 + G T LUAD 977182 + 977162 977202 41 GATCTTGTCCCCATGGGCGACTGGACATCCCGAGTGGTGCA GATCTTGTCCCCATGGGCGACTGTACATCCCGAGTGGTGCA < 41bp 0.743499189207574 0.350262060458186 0.19145525 0.19000018 prediction 0.486998378415147 Functional Loss - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:977182 chr11:977185 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_67691 0 0 1 2 977185 977207 mRNA hsa-miR-148b AP2A2 miRanda miRanda
5791 chr22 35811868 35811868 1 + C T LUAD 35811866 + 35811846 35811886 41 AGCGCAGCTGGACTGACAGCCTCGGTGATGAGGGACCCTTC AGCGCAGCTGGACTGACAGCCTTGGTGATGAGGGACCCTTC < 41bp 0.74326134721951 0.46220652153524 0.19794187 0.17657295 prediction 0.48652269443902 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35811866 chr22:35811868 nonsynonymous SNV 0.951 4 23 hm5C_associated_SNPs_67796 0 0 1 1 35811848 35811869 mRNA hsa-miR-485-5p MCM5 miRanda miRanda
5792 chr17 18638703 18638703 1 + C T UCEC 18638701 + 18638681 18638721 41 TGGCTTTCCAAGAAGGAAAACGCCATCCGGATTGTAGATCT TGGCTTTCCAAGAAGGAAAACGTCATCCGGATTGTAGATCT < 41bp 0.823487071128773 0.580259591176517 0.58586794 0.20751876 prediction 0.486454959904513 Functional Loss - TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18638701 chr17:18638703 nonsynonymous SNV 0.890 0 23 hm5C_associated_SNPs_67806 0 0 0 1 18638684 18638707 mRNA hsa-miR-135b TRIM16L miRanda miRanda
5793 chr19 3278082 3278082 1 + G A UCEC 3278079 + 3278059 3278099 41 CGGAGGCGCAGGCGGCCATCCACGCCTTGCATGGGAGCCAG CGGAGGCGCAGGCGGCCATCCACACCTTGCATGGGAGCCAG < 41bp 0.75418110131322 0.51097437815527 0.40591434 0.20680445 prediction 0.486413446315899 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3278079 chr19:3278082 nonsynonymous SNV 0.982 1 24 hm5C_associated_SNPs_67815 0 0 0 1 3278077 3278100 mRNA hsa-miR-149 CELF5 miRanda miRanda
5794 chr1 59365079 59365079 1 + G T rs2492323 59365076 + 59365056 59365096 41 AACGCTGACTTTGACTAGCCCTGGGATCTGGGGCATTCCCA AACGCTGACTTTGACTAGCCCTGTGATCTGGGGCATTCCCA < 41bp 0.743021463456329 0.36268892045227 0.31072956 0.19834986 prediction 0.486042926912659 Functional Loss - LINC01135 ENSG00000234807 ncRNA_exonic Human lincRNA chr1:59365076 chr1:59365079 . . 0 24 hm5C_associated_SNPs_67905 0 0 0 1 59365075 59365093 mRNA hsa-miR-365 LOC100131060 miRanda miRanda
5795 chr11 64807294 64807294 1 + G A rs653111 64807291 + 64807271 64807311 41 GTGGGCCATTCCCTGGGACTCTCGCTCCTGCACTGCCAGCC GTGGGCCATTCCCTGGGACTCTCACTCCTGCACTGCCAGCC < 41bp 0.743904752442194 0.500906247470267 0.67385495 0.4416396 prediction 0.485997009943853 Functional Loss - ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807291 chr11:64807294 . . 0 24 hm5C_associated_SNPs_67914 0 0 0 4 64807287 64807308 mRNA hsa-miR-34a SNX15 miRanda miRanda
5796 chr11 64807294 64807294 1 + G A rs653111 64807291 + 64807271 64807311 41 GTGGGCCATTCCCTGGGACTCTCGCTCCTGCACTGCCAGCC GTGGGCCATTCCCTGGGACTCTCACTCCTGCACTGCCAGCC < 41bp 0.743904752442194 0.500906247470267 0.67385495 0.4416396 prediction 0.485997009943853 Functional Loss - ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807291 chr11:64807294 . . 0 24 hm5C_associated_SNPs_67914 0 0 0 4 64807288 64807308 mRNA hsa-miR-34c-5p SNX15 miRanda miRanda
5797 chr11 64807294 64807294 1 + G A rs653111 64807291 + 64807271 64807311 41 GTGGGCCATTCCCTGGGACTCTCGCTCCTGCACTGCCAGCC GTGGGCCATTCCCTGGGACTCTCACTCCTGCACTGCCAGCC < 41bp 0.743904752442194 0.500906247470267 0.67385495 0.4416396 prediction 0.485997009943853 Functional Loss - ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807291 chr11:64807294 . . 0 24 hm5C_associated_SNPs_67914 0 0 0 4 64807287 64807308 mRNA hsa-miR-449a SNX15 miRanda miRanda
5798 chr11 64807294 64807294 1 + G A rs653111 64807291 + 64807271 64807311 41 GTGGGCCATTCCCTGGGACTCTCGCTCCTGCACTGCCAGCC GTGGGCCATTCCCTGGGACTCTCACTCCTGCACTGCCAGCC < 41bp 0.743904752442194 0.500906247470267 0.67385495 0.4416396 prediction 0.485997009943853 Functional Loss - ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807291 chr11:64807294 . . 0 24 hm5C_associated_SNPs_67914 0 0 0 4 64807287 64807308 mRNA hsa-miR-449b SNX15 miRanda miRanda
5799 chr17 52991175 52991175 1 + G T CESC 52991172 + 52991152 52991192 41 TCAAAGAAGTATACCTCGACCTGGTTAAGAAAGGCGTTCAG TCAAAGAAGTATACCTCGACCTGTTTAAGAAAGGCGTTCAG < 41bp 0.742939598467105 0.365397384717522 0.20244008 0.285877 prediction 0.48587919693421 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52991172 chr17:52991175 nonsynonymous SNV 0.981 0 24 hm5C_associated_SNPs_67934 0 0 1 1 52991151 52991175 mRNA hsa-miR-125a-3p TOM1L1 miRanda miRanda
5800 chr9 133574728 133574728 1 + G T LAML 133574726 + 133574706 133574746 41 TGTATTTCAGAGGAGAAGATCTGCAGAAGATGAGCTTGCAA TGTATTTCAGAGGAGAAGATCTTCAGAAGATGAGCTTGCAA < 41bp 0.742424023233075 0.418646810944047 0.4973089 0.77667 prediction 0.484848046466151 Functional Loss - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133574726 chr9:133574728 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_68150 0 0 1 1 133574716 133574734 mRNA hsa-miR-544 EXOSC2 miRanda miRanda
5801 chr8 80553702 80553702 1 + C T UCEC 80553700 + 80553680 80553720 41 ATCTCCTATCTCAGAAGCCCCACGAACTTTAGCTTCTCCAA ATCTCCTATCTCAGAAGCCCCATGAACTTTAGCTTCTCCAA < 41bp 0.827367767530682 0.585075236084977 0.14016145 0.10165647 prediction 0.484585062891411 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80553700 chr8:80553702 stopgain 1.000 1 23 hm5C_associated_SNPs_68202 0 0 0 4 80553701 80553723 mRNA hsa-miR-9 STMN2 miRanda miRanda
5802 chr8 80553702 80553702 1 + C T UCEC 80553700 + 80553680 80553720 41 ATCTCCTATCTCAGAAGCCCCACGAACTTTAGCTTCTCCAA ATCTCCTATCTCAGAAGCCCCATGAACTTTAGCTTCTCCAA < 41bp 0.827367767530682 0.585075236084977 0.14016145 0.10165647 prediction 0.484585062891411 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80553700 chr8:80553702 stopgain 1.000 1 23 hm5C_associated_SNPs_68202 0 0 0 4 80553696 80553718 mRNA hsa-miR-146a STMN2 miRanda miRanda
5803 chr8 80553702 80553702 1 + C T UCEC 80553700 + 80553680 80553720 41 ATCTCCTATCTCAGAAGCCCCACGAACTTTAGCTTCTCCAA ATCTCCTATCTCAGAAGCCCCATGAACTTTAGCTTCTCCAA < 41bp 0.827367767530682 0.585075236084977 0.14016145 0.10165647 prediction 0.484585062891411 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80553700 chr8:80553702 stopgain 1.000 1 23 hm5C_associated_SNPs_68202 0 0 0 4 80553682 80553703 mRNA hsa-miR-491-5p STMN2 miRanda miRanda
5804 chr8 80553702 80553702 1 + C T UCEC 80553700 + 80553680 80553720 41 ATCTCCTATCTCAGAAGCCCCACGAACTTTAGCTTCTCCAA ATCTCCTATCTCAGAAGCCCCATGAACTTTAGCTTCTCCAA < 41bp 0.827367767530682 0.585075236084977 0.14016145 0.10165647 prediction 0.484585062891411 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80553700 chr8:80553702 stopgain 1.000 1 23 hm5C_associated_SNPs_68202 0 0 0 4 80553696 80553718 mRNA hsa-miR-146b-5p STMN2 miRanda miRanda
5805 chr12 9985906 9985906 1 + G T LIHC 9985904 + 9985884 9985924 41 AGTCCTGTATTCAAGTTTCTCAGGGAGTATTGCTAAAATGC AGTCCTGTATTCAAGTTTCTCATGGAGTATTGCTAAAATGC < 41bp 0.742264435018975 0.420175131357487 0.92005944 0.43825954 prediction 0.484528870037951 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9985904 chr12:9985906 nonsynonymous SNV 0.979 3 23 hm5C_associated_SNPs_68217 0 0 0 3 9985905 9985928 mRNA hsa-miR-96 KLRF1 miRanda miRanda
5806 chr12 9985906 9985906 1 + G T LIHC 9985904 + 9985884 9985924 41 AGTCCTGTATTCAAGTTTCTCAGGGAGTATTGCTAAAATGC AGTCCTGTATTCAAGTTTCTCATGGAGTATTGCTAAAATGC < 41bp 0.742264435018975 0.420175131357487 0.92005944 0.43825954 prediction 0.484528870037951 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9985904 chr12:9985906 nonsynonymous SNV 0.979 3 23 hm5C_associated_SNPs_68217 0 0 0 3 9985899 9985909 mRNA hsa-miR-125b KLRF1 miRanda miRanda
5807 chr12 9985906 9985906 1 + G T LIHC 9985904 + 9985884 9985924 41 AGTCCTGTATTCAAGTTTCTCAGGGAGTATTGCTAAAATGC AGTCCTGTATTCAAGTTTCTCATGGAGTATTGCTAAAATGC < 41bp 0.742264435018975 0.420175131357487 0.92005944 0.43825954 prediction 0.484528870037951 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9985904 chr12:9985906 nonsynonymous SNV 0.979 3 23 hm5C_associated_SNPs_68217 0 0 0 3 9985899 9985909 mRNA hsa-miR-125a-5p KLRF1 miRanda miRanda
5808 chr6 105526426 105526426 1 + C T DLBC 105526424 + 105526404 105526444 41 AAAAATGTTGCACAGCCACCCGCGAGTTCTCAGGGAAGACA AAAAATGTTGCACAGCCACCCGTGAGTTCTCAGGGAAGACA < 41bp 0.801342407524901 0.559099843236309 0.25135028 0.14543435 prediction 0.484485128577184 Functional Loss - LIN28B ENSG00000187772 CDS Human protein_coding chr6:105526424 chr6:105526426 nonsynonymous SNV 0.242 0 23 hm5C_associated_SNPs_68230 0 0 1 4 105526418 105526439 mRNA hsa-miR-125b LIN28B miRanda miRanda
5809 chr6 105526426 105526426 1 + C T DLBC 105526424 + 105526404 105526444 41 AAAAATGTTGCACAGCCACCCGCGAGTTCTCAGGGAAGACA AAAAATGTTGCACAGCCACCCGTGAGTTCTCAGGGAAGACA < 41bp 0.801342407524901 0.559099843236309 0.25135028 0.14543435 prediction 0.484485128577184 Functional Loss - LIN28B ENSG00000187772 CDS Human protein_coding chr6:105526424 chr6:105526426 nonsynonymous SNV 0.242 0 23 hm5C_associated_SNPs_68230 0 0 1 4 105526416 105526439 mRNA hsa-miR-125a-5p LIN28B miRanda miRanda
5810 chr6 105526426 105526426 1 + C T DLBC 105526424 + 105526404 105526444 41 AAAAATGTTGCACAGCCACCCGCGAGTTCTCAGGGAAGACA AAAAATGTTGCACAGCCACCCGTGAGTTCTCAGGGAAGACA < 41bp 0.801342407524901 0.559099843236309 0.25135028 0.14543435 prediction 0.484485128577184 Functional Loss - LIN28B ENSG00000187772 CDS Human protein_coding chr6:105526424 chr6:105526426 nonsynonymous SNV 0.242 0 23 hm5C_associated_SNPs_68230 0 0 1 4 105526414 105526435 mRNA hsa-miR-146a LIN28B miRanda miRanda
5811 chr6 105526426 105526426 1 + C T DLBC 105526424 + 105526404 105526444 41 AAAAATGTTGCACAGCCACCCGCGAGTTCTCAGGGAAGACA AAAAATGTTGCACAGCCACCCGTGAGTTCTCAGGGAAGACA < 41bp 0.801342407524901 0.559099843236309 0.25135028 0.14543435 prediction 0.484485128577184 Functional Loss - LIN28B ENSG00000187772 CDS Human protein_coding chr6:105526424 chr6:105526426 nonsynonymous SNV 0.242 0 23 hm5C_associated_SNPs_68230 0 0 1 4 105526414 105526435 mRNA hsa-miR-146b-5p LIN28B miRanda miRanda
5812 chr10 102738704 102738704 1 - G A BLCA 102738706 - 102738686 102738726 41 GTGAAGCTGCCAGAGCCCTCCTCAGTGGCACGCTCCGTGAA GTGAAGCTGCCAGAGCCCTCCTTAGTGGCACGCTCCGTGAA < 41bp 0.811479331108059 0.569283538155755 0.24397239 0.16429213 prediction 0.484391585904608 Functional Loss - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102738706 chr10:102738704 nonsynonymous SNV 0.786 4 23 hm5C_associated_SNPs_68243 0 0 0 1 102738692 102738713 mRNA hsa-miR-22 MRPL43 miRanda miRanda
5813 chr1 205561360 205561360 1 + C T BLCA 205561358 + 205561338 205561378 41 CGGCAAGCCTGGGCCTGTTTCTCAGCAGCACCTTCCCCAGC CGGCAAGCCTGGGCCTGTTTCTTAGCAGCACCTTCCCCAGC < 41bp 0.810030296062617 0.56788351061357 0.12532258 0.2138384 prediction 0.484293570898094 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561358 chr1:205561360 synonymous SNV . 0 23 hm5C_associated_SNPs_68268 0 0 0 2 205561348 205561372 mRNA hsa-miR-18a MFSD4 miRanda miRanda
5814 chr1 205561360 205561360 1 + C T BLCA 205561358 + 205561338 205561378 41 CGGCAAGCCTGGGCCTGTTTCTCAGCAGCACCTTCCCCAGC CGGCAAGCCTGGGCCTGTTTCTTAGCAGCACCTTCCCCAGC < 41bp 0.810030296062617 0.56788351061357 0.12532258 0.2138384 prediction 0.484293570898094 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561358 chr1:205561360 synonymous SNV . 0 23 hm5C_associated_SNPs_68268 0 0 0 2 205561348 205561372 mRNA hsa-miR-18b MFSD4 miRanda miRanda
5815 chr16 22926289 22926289 1 + G T UCEC 22926286 + 22926266 22926306 41 AGCCTGATGCCCAGGACCCTCGAGAGCCAGATCACGCTGGA AGCCTGATGCCCAGGACCCTCGATAGCCAGATCACGCTGGA < 41bp 0.921072583067326 0.679278589615078 0.60984117 0.31311 prediction 0.483587986904495 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926286 chr16:22926289 nonsynonymous SNV 0.933 0 24 hm5C_associated_SNPs_68433 0 0 0 3 22926280 22926305 mRNA hsa-miR-125a-3p HS3ST2 miRanda miRanda
5816 chr16 22926289 22926289 1 + G T UCEC 22926286 + 22926266 22926306 41 AGCCTGATGCCCAGGACCCTCGAGAGCCAGATCACGCTGGA AGCCTGATGCCCAGGACCCTCGATAGCCAGATCACGCTGGA < 41bp 0.921072583067326 0.679278589615078 0.60984117 0.31311 prediction 0.483587986904495 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926286 chr16:22926289 nonsynonymous SNV 0.933 0 24 hm5C_associated_SNPs_68433 0 0 0 3 22926279 22926301 mRNA hsa-miR-134 HS3ST2 miRanda miRanda
5817 chr16 22926289 22926289 1 + G T UCEC 22926286 + 22926266 22926306 41 AGCCTGATGCCCAGGACCCTCGAGAGCCAGATCACGCTGGA AGCCTGATGCCCAGGACCCTCGATAGCCAGATCACGCTGGA < 41bp 0.921072583067326 0.679278589615078 0.60984117 0.31311 prediction 0.483587986904495 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926286 chr16:22926289 nonsynonymous SNV 0.933 0 24 hm5C_associated_SNPs_68433 0 0 0 3 22926273 22926296 mRNA hsa-miR-149 HS3ST2 miRanda miRanda
5818 chr19 44680813 44680813 1 + G T LGG 44680811 + 44680791 44680831 41 CTTCAAGTCTTCAGGCCCATCAGGGAGTTCACACTGGAGAG CTTCAAGTCTTCAGGCCCATCATGGAGTTCACACTGGAGAG < 41bp 0.890952354511936 0.649245302157059 0.8788971 0.3042265 prediction 0.483414104709753 Functional Loss - ZNF226 ENSG00000167380 CDS Human protein_coding chr19:44680811 chr19:44680813 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_68484 0 0 1 3 44680808 44680828 mRNA hsa-miR-199a-5p ZNF226 miRanda miRanda
5819 chr19 44680813 44680813 1 + G T LGG 44680811 + 44680791 44680831 41 CTTCAAGTCTTCAGGCCCATCAGGGAGTTCACACTGGAGAG CTTCAAGTCTTCAGGCCCATCATGGAGTTCACACTGGAGAG < 41bp 0.890952354511936 0.649245302157059 0.8788971 0.3042265 prediction 0.483414104709753 Functional Loss - ZNF226 ENSG00000167380 CDS Human protein_coding chr19:44680811 chr19:44680813 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_68484 0 0 1 3 44680808 44680828 mRNA hsa-miR-199b-5p ZNF226 miRanda miRanda
5820 chr19 44680813 44680813 1 + G T LGG 44680811 + 44680791 44680831 41 CTTCAAGTCTTCAGGCCCATCAGGGAGTTCACACTGGAGAG CTTCAAGTCTTCAGGCCCATCATGGAGTTCACACTGGAGAG < 41bp 0.890952354511936 0.649245302157059 0.8788971 0.3042265 prediction 0.483414104709753 Functional Loss - ZNF226 ENSG00000167380 CDS Human protein_coding chr19:44680811 chr19:44680813 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_68484 0 0 1 3 44680805 44680827 mRNA hsa-miR-125a-3p ZNF226 miRanda miRanda
5821 chr1 148932916 148932916 1 + G T LUSC 148932914 + 148932894 148932934 41 TCTGCGGCCAAGACTCCGTCCTGCAAGGTAAGGTCCCCTCC TCTGCGGCCAAGACTCCGTCCTTCAAGGTAAGGTCCCCTCC < 41bp 0.884589910036313 0.643266496850154 0.5138472 0.40850538 prediction 0.482646826372319 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932914 chr1:148932916 . . 0 23 hm5C_associated_SNPs_68655 0 0 0 2 148932916 148932920 mRNA hsa-miR-148b LOC645166 miRanda miRanda
5822 chr1 148932916 148932916 1 + G T LUSC 148932914 + 148932894 148932934 41 TCTGCGGCCAAGACTCCGTCCTGCAAGGTAAGGTCCCCTCC TCTGCGGCCAAGACTCCGTCCTTCAAGGTAAGGTCCCCTCC < 41bp 0.884589910036313 0.643266496850154 0.5138472 0.40850538 prediction 0.482646826372319 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932914 chr1:148932916 . . 0 23 hm5C_associated_SNPs_68655 0 0 0 2 148932903 148932920 mRNA hsa-miR-431 LOC645166 miRanda miRanda
5823 chr19 14070879 14070879 1 + C T HNSC 14070877 + 14070857 14070897 41 CCCCCACTGAGGAGGGCCAGCTCCGGTGAGCGCGGGGATCC CCCCCACTGAGGAGGGCCAGCTTCGGTGAGCGCGGGGATCC < 41bp 0.740816638416495 0.480369415152064 0.80500615 0.69590706 prediction 0.481633276832991 Functional Loss - DCAF15 ENSG00000132017 CDS Human protein_coding chr19:14070877 chr19:14070879 synonymous SNV . 0 23 hm5C_associated_SNPs_68887 0 0 1 1 14070865 14070881 mRNA hsa-miR-9 DCAF15 miRanda miRanda
5824 chrX 134483146 134483146 1 + G T UCEC 134483143 + 134483123 134483163 41 TCCAGGTAATGGGACCTGCCCAGGAGGCCCCAGTAGCAGAG TCCAGGTAATGGGACCTGCCCAGTAGGCCCCAGTAGCAGAG < 41bp 0.914507587153756 0.673779040004165 0.8016628 0.10319027 prediction 0.481457094299183 Functional Loss - ZNF449 ENSG00000173275 CDS Human protein_coding chrX:134483143 chrX:134483146 stopgain 0.061 0 24 hm5C_associated_SNPs_68923 0 0 0 1 134483139 134483159 mRNA hsa-miR-326 ZNF449 miRanda miRanda
5825 chr2 209353827 209353827 1 + C T LUAD 209353825 + 209353805 209353845 41 TGCCTCACTCCTTCACTGGGCTCGGGTGGGAGATCCGCATG TGCCTCACTCCTTCACTGGGCTTGGGTGGGAGATCCGCATG < 41bp 0.802933187640774 0.562220193596966 0.13044396 0.16885534 prediction 0.481425988087616 Functional Loss - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209353825 chr2:209353827 synonymous SNV . 0 23 hm5C_associated_SNPs_68931 0 0 0 1 209353809 209353830 mRNA hsa-miR-615-3p PTH2R miRanda miRanda
5826 chr4 115597180 115597180 1 + C T UCEC 115597178 + 115597158 115597198 41 GGATAGATTATATTATTCGTCACAATGGAGCCCATCACCTA GGATAGATTATATTATTCGTCATAATGGAGCCCATCACCTA < 41bp 0.740668347880854 0.471296230400493 0.071392894 0.1339229 prediction 0.481336695761708 Functional Loss - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115597178 chr4:115597180 synonymous SNV . 0 23 hm5C_associated_SNPs_68956 0 0 0 2 115597166 115597188 mRNA hsa-miR-136 UGT8 miRanda miRanda
5827 chr4 115597180 115597180 1 + C T UCEC 115597178 + 115597158 115597198 41 GGATAGATTATATTATTCGTCACAATGGAGCCCATCACCTA GGATAGATTATATTATTCGTCATAATGGAGCCCATCACCTA < 41bp 0.740668347880854 0.471296230400493 0.071392894 0.1339229 prediction 0.481336695761708 Functional Loss - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115597178 chr4:115597180 synonymous SNV . 0 23 hm5C_associated_SNPs_68956 0 0 0 2 115597162 115597183 mRNA hsa-miR-758 UGT8 miRanda miRanda
5828 chr17 42225860 42225860 1 + T C COAD 42225859 + 42225839 42225879 41 TGTCCGCCCAGGATGAGTCTCTAGATCCTGTCATCCAATGT TGTCCGCCCAGGATGAGTCTCCAGATCCTGTCATCCAATGT < 41bp 0.759726658982655 0.519188433429062 0.16851962 0.38972074 prediction 0.481076451107187 Functional Loss - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42225859 chr17:42225860 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_69013 0 0 1 1 42225844 42225866 mRNA hsa-miR-383 C17orf53 miRanda miRanda
5829 chr4 100787761 100787761 1 + C T rs142005334 100787759 + 100787739 100787779 41 TGTCTGCTCTCTGTATATCTCCCGAGGAGAAGACTGAGTGA TGTCTGCTCTCTGTATATCTCCTGAGGAGAAGACTGAGTGA < 41bp 0.74657366763046 0.506113206766001 0.10086435 0.18662089 prediction 0.480920921728918 Functional Loss - DAPP1 ENSG00000070190 UTR3 Human protein_coding chr4:100787759 chr4:100787761 . . 0 23 hm5C_associated_SNPs_69041 0 0 0 1 100787761 100787775 mRNA hsa-miR-599 DAPP1 miRanda miRanda
5830 chr19 49517793 49517793 1 + G A COAD 49517790 + 49517770 49517810 41 ACGGCATCCCCATAGACCTGCTGGACCGGCTGCTTATCGTC ACGGCATCCCCATAGACCTGCTGAACCGGCTGCTTATCGTC < 41bp 0.741861320028122 0.501417318246654 0.074180365 0.0327003 prediction 0.480888003562937 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49517790 chr19:49517793 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_69048 0 0 1 2 49517772 49517793 mRNA hsa-miR-214 RUVBL2 miRanda miRanda
5831 chr19 49517793 49517793 1 + G A COAD 49517790 + 49517770 49517810 41 ACGGCATCCCCATAGACCTGCTGGACCGGCTGCTTATCGTC ACGGCATCCCCATAGACCTGCTGAACCGGCTGCTTATCGTC < 41bp 0.741861320028122 0.501417318246654 0.074180365 0.0327003 prediction 0.480888003562937 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49517790 chr19:49517793 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_69048 0 0 1 2 49517792 49517814 mRNA hsa-miR-185 RUVBL2 miRanda miRanda
5832 chr1 156180174 156180174 1 + C T BLCA 156180172 + 156180152 156180192 41 TTGTGGTGGGCTATGAGAGCCTCAAGAAACTCAGCCTCCGA TTGTGGTGGGCTATGAGAGCCTTAAGAAACTCAGCCTCCGA < 41bp 0.740434514025249 0.461826311734851 0.5190661 0.1668728 prediction 0.480869028050498 Functional Loss - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156180172 chr1:156180174 synonymous SNV . 0 23 hm5C_associated_SNPs_69052 0 0 0 1 156180169 156180190 mRNA hsa-miR-485-5p SLC25A44 miRanda miRanda
5833 chr12 104476528 104476528 1 + G T UCEC 104476526 + 104476506 104476546 41 CCACCCTAGTATCAGATTCTCAGGAAGATAAAAAAAATTCA CCACCCTAGTATCAGATTCTCATGAAGATAAAAAAAATTCA < 41bp 0.740299541296521 0.399052248632132 0.88938016 0.10661602 prediction 0.480599082593042 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104476526 chr12:104476528 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_69113 0 0 1 1 104476512 104476532 mRNA hsa-miR-384 HCFC2 miRanda miRanda
5834 chr6 32610357 32610357 1 + A T rs9272781 32610353 + 32610333 32610373 41 CACATGCACATGAGCACACTCTGCATTCTGACCTCAACAAC CACATGCACATGAGCACACTCTGCTTTCTGACCTCAACAAC < 41bp 0.740283133643384 0.434874131823415 0.058968395 0.028108 prediction 0.480566267286769 Functional Loss - HLA-DQA1 ENSG00000196735 intronic Human protein_coding chr6:32610353 chr6:32610357 . . 0 25 hm5C_associated_SNPs_69122 0 0 0 1 32610346 32610368 mRNA hsa-let-7b HLA-DQA1 miRanda miRanda
5835 chr17 15644532 15644532 1 + G A LIHC 15644529 + 15644509 15644549 41 TCTGGGCGCTTACCCAGTTGCTCGCTGGTGAGAGGCACTCC TCTGGGCGCTTACCCAGTTGCTCACTGGTGAGAGGCACTCC < 41bp 0.741515402619897 0.501284359768686 0.07447684 0.09473482 prediction 0.48046208570242 Functional Loss - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15644529 chr17:15644532 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_69149 0 0 0 1 15644516 15644535 mRNA hsa-miR-497 TBC1D26 miRanda miRanda
5836 chr14 55535064 55535064 1 + G C rs141621682 55535060 + 55535040 55535080 41 TCACAAATAATTAGTGCTACCTGGGGTACTCTCAAATATAC TCACAAATAATTAGTGCTACCTGGCGTACTCTCAAATATAC < 41bp 0.740164517825629 0.497626824905983 0.054616243 0.023999989 prediction 0.480329035651258 Functional Loss - MAPK1IP1L ENSG00000168175 UTR3 Human protein_coding chr14:55535060 chr14:55535064 . . 0 25 hm5C_associated_SNPs_69186 0 0 1 3 55535063 55535087 mRNA hsa-miR-320a MAPK1IP1L miRanda miRanda
5837 chr14 55535064 55535064 1 + G C rs141621682 55535060 + 55535040 55535080 41 TCACAAATAATTAGTGCTACCTGGGGTACTCTCAAATATAC TCACAAATAATTAGTGCTACCTGGCGTACTCTCAAATATAC < 41bp 0.740164517825629 0.497626824905983 0.054616243 0.023999989 prediction 0.480329035651258 Functional Loss - MAPK1IP1L ENSG00000168175 UTR3 Human protein_coding chr14:55535060 chr14:55535064 . . 0 25 hm5C_associated_SNPs_69186 0 0 1 3 55535063 55535085 mRNA hsa-miR-590-5p MAPK1IP1L miRanda miRanda
5838 chr14 55535064 55535064 1 + G C rs141621682 55535060 + 55535040 55535080 41 TCACAAATAATTAGTGCTACCTGGGGTACTCTCAAATATAC TCACAAATAATTAGTGCTACCTGGCGTACTCTCAAATATAC < 41bp 0.740164517825629 0.497626824905983 0.054616243 0.023999989 prediction 0.480329035651258 Functional Loss - MAPK1IP1L ENSG00000168175 UTR3 Human protein_coding chr14:55535060 chr14:55535064 . . 0 25 hm5C_associated_SNPs_69186 0 0 1 3 55535063 55535087 mRNA hsa-miR-320b MAPK1IP1L miRanda miRanda
5839 chr12 117426644 117426644 1 + G T LUAD 117426642 + 117426622 117426662 41 ACCAAGTTGCTTTTGGTGTACAGGGTCTGGGATGGGTGTAC ACCAAGTTGCTTTTGGTGTACATGGTCTGGGATGGGTGTAC < 41bp 0.740163340958337 0.384411400276175 0.40534806 0.3083952 prediction 0.480326681916674 Functional Loss - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426642 chr12:117426644 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_69187 0 0 0 5 117426626 117426648 mRNA hsa-miR-100 FBXW8 miRanda miRanda
5840 chr12 117426644 117426644 1 + G T LUAD 117426642 + 117426622 117426662 41 ACCAAGTTGCTTTTGGTGTACAGGGTCTGGGATGGGTGTAC ACCAAGTTGCTTTTGGTGTACATGGTCTGGGATGGGTGTAC < 41bp 0.740163340958337 0.384411400276175 0.40534806 0.3083952 prediction 0.480326681916674 Functional Loss - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426642 chr12:117426644 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_69187 0 0 0 5 117426626 117426648 mRNA hsa-miR-10a FBXW8 miRanda miRanda
5841 chr12 117426644 117426644 1 + G T LUAD 117426642 + 117426622 117426662 41 ACCAAGTTGCTTTTGGTGTACAGGGTCTGGGATGGGTGTAC ACCAAGTTGCTTTTGGTGTACATGGTCTGGGATGGGTGTAC < 41bp 0.740163340958337 0.384411400276175 0.40534806 0.3083952 prediction 0.480326681916674 Functional Loss - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426642 chr12:117426644 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_69187 0 0 0 5 117426627 117426648 mRNA hsa-miR-10b FBXW8 miRanda miRanda
5842 chr12 117426644 117426644 1 + G T LUAD 117426642 + 117426622 117426662 41 ACCAAGTTGCTTTTGGTGTACAGGGTCTGGGATGGGTGTAC ACCAAGTTGCTTTTGGTGTACATGGTCTGGGATGGGTGTAC < 41bp 0.740163340958337 0.384411400276175 0.40534806 0.3083952 prediction 0.480326681916674 Functional Loss - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426642 chr12:117426644 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_69187 0 0 0 5 117426625 117426646 mRNA hsa-miR-486-5p FBXW8 miRanda miRanda
5843 chr12 117426644 117426644 1 + G T LUAD 117426642 + 117426622 117426662 41 ACCAAGTTGCTTTTGGTGTACAGGGTCTGGGATGGGTGTAC ACCAAGTTGCTTTTGGTGTACATGGTCTGGGATGGGTGTAC < 41bp 0.740163340958337 0.384411400276175 0.40534806 0.3083952 prediction 0.480326681916674 Functional Loss - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426642 chr12:117426644 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_69187 0 0 0 5 117426631 117426649 mRNA hsa-miR-504 FBXW8 miRanda miRanda
5844 chr13 52313201 52313201 1 + C T LUSC 52313199 + 52313179 52313219 41 TCTCAGGTGGGGTGACCGCTCTCTGTTGGGACCCAGTCCAG TCTCAGGTGGGGTGACCGCTCTTTGTTGGGACCCAGTCCAG < 41bp 0.739973242600789 0.450498641444515 0.01653999 0.016816795 prediction 0.479946485201578 Functional Loss - WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52313199 chr13:52313201 synonymous SNV . 0 23 hm5C_associated_SNPs_69281 0 0 0 2 52313200 52313220 mRNA hsa-miR-378 WDFY2 miRanda miRanda
5845 chr13 52313201 52313201 1 + C T LUSC 52313199 + 52313179 52313219 41 TCTCAGGTGGGGTGACCGCTCTCTGTTGGGACCCAGTCCAG TCTCAGGTGGGGTGACCGCTCTTTGTTGGGACCCAGTCCAG < 41bp 0.739973242600789 0.450498641444515 0.01653999 0.016816795 prediction 0.479946485201578 Functional Loss - WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52313199 chr13:52313201 synonymous SNV . 0 23 hm5C_associated_SNPs_69281 0 0 0 2 52313201 52313220 mRNA hsa-miR-422a WDFY2 miRanda miRanda
5846 chr6 119229073 119229073 1 + G T rs7765016 119229071 + 119229051 119229091 41 TGAAAGCACTTATAAAGAAACAGGAATCATTAGACCAGGTT TGAAAGCACTTATAAAGAAACATGAATCATTAGACCAGGTT < 41bp 0.853290574549901 0.613335198866676 0.8829046 0.43871918 prediction 0.479910751366451 Functional Loss - ASF1A ENSG00000111875 UTR3 Human protein_coding chr6:119229071 chr6:119229073 . . 0 23 hm5C_associated_SNPs_69288 0 0 1 1 119229068 119229092 mRNA hsa-miR-490-3p ASF1A miRanda miRanda
5847 chr11 36631673 36631673 1 + G T UCEC 36631670 + 36631650 36631690 41 AGGAATGTCTGCCCATATGTCAGGATTGGAAATAATGGATG AGGAATGTCTGCCCATATGTCAGTATTGGAAATAATGGATG < 41bp 0.739777006392007 0.425503937418065 0.28941298 0.02277413 prediction 0.479554012784013 Functional Loss - C11orf74 ENSG00000166352 CDS Human protein_coding chr11:36631670 chr11:36631673 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_69364 0 0 1 1 36631668 36631690 mRNA hsa-miR-136 C11orf74 miRanda miRanda
5848 chr10 96353272 96353272 1 + C T COAD 96353270 + 96353250 96353290 41 TTTTAGATGCACAGCTTCAACACGGATCCAGAGGTGTTTAT TTTTAGATGCACAGCTTCAACATGGATCCAGAGGTGTTTAT < 41bp 0.805248016678216 0.565668561144644 0.41297445 0.35392272 prediction 0.479158911067144 Functional Loss - HELLS ENSG00000119969 CDS Human protein_coding chr10:96353270 chr10:96353272 nonsynonymous SNV 0.875 1 23 hm5C_associated_SNPs_69453 0 0 1 1 96353256 96353272 mRNA hsa-miR-653 HELLS miRanda miRanda
5849 chr2 88485525 88485525 1 + C T UCEC 88485523 + 88485503 88485543 41 CGGAGATCGTAGCCCTGGAGCACAAGGAGACACGCTGCACC CGGAGATCGTAGCCCTGGAGCATAAGGAGACACGCTGCACC < 41bp 0.792732201290621 0.553201809478625 0.38381013 0.3285544 prediction 0.479060783623992 Functional Loss - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88485523 chr2:88485525 synonymous SNV . 0 23 hm5C_associated_SNPs_69477 0 0 0 1 88485513 88485537 mRNA hsa-miR-187 THNSL2 miRanda miRanda
5850 chr21 43519149 43519149 1 + G T LUSC 43519146 + 43519126 43519166 41 CTTTCCATGTCCGGGTTTACCGGGGTATGGAGTTGCTCAGG CTTTCCATGTCCGGGTTTACCGGTGTATGGAGTTGCTCAGG < 41bp 0.921858605112651 0.682440162882613 0.962146 0.93418497 prediction 0.478836884460075 Functional Loss - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43519146 chr21:43519149 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_69541 0 0 0 1 43519142 43519164 mRNA hsa-miR-146a UMODL1 miRanda miRanda
5851 chr17 41063095 41063095 1 + G T UCEC 41063092 + 41063072 41063112 41 CTGTGGACTCTGGAGAAAGCCCAGAGGTGGTGCGAGCAGCC CTGTGGACTCTGGAGAAAGCCCATAGGTGGTGCGAGCAGCC < 41bp 0.739371281360981 0.348115238360922 0.26330897 0.17114988 prediction 0.478742562721962 Functional Loss - G6PC ENSG00000131482 CDS Human protein_coding chr17:41063092 chr17:41063095 nonsynonymous SNV 0.864 1 24 hm5C_associated_SNPs_69556 0 0 1 2 41063077 41063098 mRNA hsa-miR-330-5p G6PC miRanda miRanda
5852 chr17 41063095 41063095 1 + G T UCEC 41063092 + 41063072 41063112 41 CTGTGGACTCTGGAGAAAGCCCAGAGGTGGTGCGAGCAGCC CTGTGGACTCTGGAGAAAGCCCATAGGTGGTGCGAGCAGCC < 41bp 0.739371281360981 0.348115238360922 0.26330897 0.17114988 prediction 0.478742562721962 Functional Loss - G6PC ENSG00000131482 CDS Human protein_coding chr17:41063092 chr17:41063095 nonsynonymous SNV 0.864 1 24 hm5C_associated_SNPs_69556 0 0 1 2 41063081 41063098 mRNA hsa-miR-326 G6PC miRanda miRanda
5853 chr16 32265036 32265036 1 + G T LUAD 32265033 + 32265013 32265053 41 TGCCTCCGCGGCAGGGTTGTCAAGGTAACGCTCCTCAGACA TGCCTCCGCGGCAGGGTTGTCAATGTAACGCTCCTCAGACA < 41bp 0.913386312252592 0.674081144116458 0.89675516 0.1747405 prediction 0.478610336272267 Functional Loss - TP53TG3D ENSG00000205456 CDS Human protein_coding chr16:32265033 chr16:32265036 nonsynonymous SNV 0.013 1 24 hm5C_associated_SNPs_69586 0 0 0 1 32265017 32265036 mRNA hsa-miR-431 TP53TG3 miRanda miRanda
5854 chr6 54214655 54214655 1 + G T LUAD 54214652 + 54214632 54214672 41 AACAACGTAGAAAAATCTAACAGGATCTATCAATGTTCTCC AACAACGTAGAAAAATCTAACAGTATCTATCAATGTTCTCC < 41bp 0.739304385003161 0.367203583447964 0.42464268 0.12733129 prediction 0.478608770006323 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54214652 chr6:54214655 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_69588 0 0 0 3 54214651 54214672 mRNA hsa-miR-146a TINAG miRanda miRanda
5855 chr6 54214655 54214655 1 + G T LUAD 54214652 + 54214632 54214672 41 AACAACGTAGAAAAATCTAACAGGATCTATCAATGTTCTCC AACAACGTAGAAAAATCTAACAGTATCTATCAATGTTCTCC < 41bp 0.739304385003161 0.367203583447964 0.42464268 0.12733129 prediction 0.478608770006323 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54214652 chr6:54214655 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_69588 0 0 0 3 54214651 54214676 mRNA hsa-miR-185 TINAG miRanda miRanda
5856 chr6 54214655 54214655 1 + G T LUAD 54214652 + 54214632 54214672 41 AACAACGTAGAAAAATCTAACAGGATCTATCAATGTTCTCC AACAACGTAGAAAAATCTAACAGTATCTATCAATGTTCTCC < 41bp 0.739304385003161 0.367203583447964 0.42464268 0.12733129 prediction 0.478608770006323 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54214652 chr6:54214655 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_69588 0 0 0 3 54214651 54214672 mRNA hsa-miR-146b-5p TINAG miRanda miRanda
5857 chr3 10108949 10108949 1 + T C COAD 10108948 + 10108928 10108968 41 GATGAAGGGGAAGGTGCTCACTCGGTTAAAGCACATTGTAG GATGAAGGGGAAGGTGCTCACCCGGTTAAAGCACATTGTAG < 41bp 0.753815686610113 0.51465575708743 0.11477932 0.17927074 prediction 0.478319859045365 Functional Loss - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10108948 chr3:10108949 synonymous SNV . 0 22 hm5C_associated_SNPs_69660 0 0 1 1 10108943 10108963 mRNA hsa-miR-218 FANCD2 miRanda miRanda
5858 chr3 152018067 152018067 1 + C T KIRC 152018065 + 152018045 152018085 41 GTTCCAGAGGGGGACTTGCTCACGGCCAGACACGGAATGTA GTTCCAGAGGGGGACTTGCTCATGGCCAGACACGGAATGTA < 41bp 0.789853222965046 0.550799235353575 0.62211555 0.71307147 prediction 0.478107975222943 Functional Loss - MBNL1 ENSG00000152601 CDS Human protein_coding chr3:152018065 chr3:152018067 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_69727 0 0 1 1 152018059 152018079 mRNA hsa-miR-187 MBNL1 miRanda miRanda
5859 chr16 55360448 55360448 1 + G T LUAD 55360445 + 55360425 55360465 41 TATGCGGCCGCTGCAGCTGCCCAGAGCTACCCTGGCTACCT TATGCGGCCGCTGCAGCTGCCCATAGCTACCCTGGCTACCT < 41bp 0.738987264809802 0.340015291784238 0.82029414 0.26622513 prediction 0.477974529619604 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55360445 chr16:55360448 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_69755 0 0 0 2 55360428 55360451 mRNA hsa-miR-330-5p IRX6 miRanda miRanda
5860 chr16 55360448 55360448 1 + G T LUAD 55360445 + 55360425 55360465 41 TATGCGGCCGCTGCAGCTGCCCAGAGCTACCCTGGCTACCT TATGCGGCCGCTGCAGCTGCCCATAGCTACCCTGGCTACCT < 41bp 0.738987264809802 0.340015291784238 0.82029414 0.26622513 prediction 0.477974529619604 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55360445 chr16:55360448 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_69755 0 0 0 2 55360432 55360451 mRNA hsa-miR-326 IRX6 miRanda miRanda
5861 chr3 136701098 136701098 1 + G A STAD 136701095 + 136701075 136701115 41 TGTGATGTCACTGATGACATCACGGCCACTGTGCCATACAA TGTGATGTCACTGATGACATCACAGCCACTGTGCCATACAA < 41bp 0.738938640270291 0.493910182341306 0.17279142 0.11082727 prediction 0.477877280540583 Functional Loss - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136701095 chr3:136701098 synonymous SNV . 0 24 hm5C_associated_SNPs_69780 0 0 0 1 136701087 136701112 mRNA hsa-miR-183 IL20RB miRanda miRanda
5862 chr11 838021 838021 1 + G T LUAD 838019 + 837999 838039 41 GCTGTGGGGATCGGCATTGCCTGTGTGCAGGTGAGGGCACA GCTGTGGGGATCGGCATTGCCTTTGTGCAGGTGAGGGCACA < 41bp 0.738923129651231 0.396152324962151 0.2728352 0.16556218 prediction 0.477846259302461 Functional Loss - CD151 ENSG00000177697 CDS Human protein_coding chr11:838019 chr11:838021 nonsynonymous SNV 0.940 1 23 hm5C_associated_SNPs_69788 0 0 1 1 838003 838028 mRNA hsa-miR-342-3p CD151 miRanda miRanda
5863 chr12 10163381 10163381 1 + C T rs11833101 10163379 + 10163359 10163399 41 ATGTCTGAAGAAGTGACCTACGCGACACTCACATTTCAGGA ATGTCTGAAGAAGTGACCTACGTGACACTCACATTTCAGGA < 41bp 0.782053770691272 0.543281710570657 0.034172207 0.018832535 prediction 0.477544120241231 Functional Loss - CLEC12B ENSG00000256660 CDS Human protein_coding chr12:10163379 chr12:10163381 nonsynonymous SNV 0.395 0 23 hm5C_associated_SNPs_69870 0 0 0 2 10163376 10163397 mRNA hsa-miR-203 CLEC12B miRanda miRanda
5864 chr12 10163381 10163381 1 + C T rs11833101 10163379 + 10163359 10163399 41 ATGTCTGAAGAAGTGACCTACGCGACACTCACATTTCAGGA ATGTCTGAAGAAGTGACCTACGTGACACTCACATTTCAGGA < 41bp 0.782053770691272 0.543281710570657 0.034172207 0.018832535 prediction 0.477544120241231 Functional Loss - CLEC12B ENSG00000256660 CDS Human protein_coding chr12:10163379 chr12:10163381 nonsynonymous SNV 0.395 0 23 hm5C_associated_SNPs_69870 0 0 0 2 10163368 10163391 mRNA hsa-miR-142-3p CLEC12B miRanda miRanda
5865 chrX 134995028 134995028 1 + G T UCEC 134995026 + 134995006 134995046 41 ATAGATTCCCACTGCCATCTCAGAAAAGTTAAGCACATGAG ATAGATTCCCACTGCCATCTCATAAAAGTTAAGCACATGAG < 41bp 0.816648348687372 0.577896743983336 0.1941674 0.05043304 prediction 0.477503209408072 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134995026 chrX:134995028 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_69884 0 0 0 1 134995023 134995043 mRNA hsa-miR-218 SAGE1 miRanda miRanda
5866 chr1 150307469 150307469 1 + T C rs587699756 150307468 + 150307448 150307488 41 CCTGGATGAGCAAGGGCGCACTGTAGATGCAACAGGCAAGG CCTGGATGAGCAAGGGCGCACCGTAGATGCAACAGGCAAGG < 41bp 0.738708671897359 0.485701330221672 0.2077002 0.2696339 prediction 0.477417343794718 Functional Loss - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150307468 chr1:150307469 synonymous SNV . 0 22 hm5C_associated_SNPs_69922 0 0 1 1 150307452 150307474 mRNA hsa-miR-139-5p PRPF3 miRanda miRanda
5867 chr14 105936295 105936295 1 + G A CESC 105936292 + 105936272 105936312 41 GGATGAACTGGATCGACGCCCCGGATGACGTGTTCTACATG GGATGAACTGGATCGACGCCCCGAATGACGTGTTCTACATG < 41bp 0.738594888503915 0.494961817299601 0.77761114 0.20319635 prediction 0.47718977700783 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936292 chr14:105936295 nonsynonymous SNV 0.934 0 24 hm5C_associated_SNPs_69985 0 0 1 1 105936289 105936310 mRNA hsa-miR-30a MTA1 miRanda miRanda
5868 chr1 44684367 44684367 1 + T C PAAD 44684366 + 44684346 44684386 41 TAAGATACCAGTATTTGATGCTGGGCACGAACGACGGCGGA TAAGATACCAGTATTTGATGCCGGGCACGAACGACGGCGGA < 41bp 0.73909296421104 0.500524257521748 0.51783204 0.833349 prediction 0.477137413378583 Functional Loss - DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684366 chr1:44684367 synonymous SNV . 0 22 hm5C_associated_SNPs_70001 0 0 1 1 44684349 44684370 mRNA hsa-miR-338-3p DMAP1 miRanda miRanda
5869 chr2 228758580 228758580 1 + G A rs16824157 228758577 + 228758557 228758597 41 GCGTCTGGAGAGGAGCTGAACACGCTGGAGGGCCACAGGAA GCGTCTGGAGAGGAGCTGAACACACTGGAGGGCCACAGGAA < 41bp 0.757439974560863 0.518997681171966 0.68251395 0.59164804 prediction 0.476884586777795 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228758577 chr2:228758580 synonymous SNV . 0 24 hm5C_associated_SNPs_70064 0 0 0 1 228758572 228758592 mRNA hsa-miR-328 WDR69 miRanda miRanda
5870 chr12 69986785 69986785 1 + T C rs201962311 69986784 + 69986764 69986804 41 TTCCCGGGTAAGAGTTGACTCTACAGCAAAGGTTGCAGAAA TTCCCGGGTAAGAGTTGACTCCACAGCAAAGGTTGCAGAAA < 41bp 0.738429967439244 0.478924865941402 0.8826057 0.24929166 prediction 0.476859934878487 Functional Loss - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69986784 chr12:69986785 synonymous SNV . 0 22 hm5C_associated_SNPs_70073 0 0 1 1 69986783 69986804 mRNA hsa-miR-544 CCT2 miRanda miRanda
5871 chr14 75182761 75182761 1 + T C UCEC 75182760 + 75182740 75182780 41 ACTTTTCCATAAAAGCCAAACTGGACTTAGTGCAGTCAATG ACTTTTCCATAAAAGCCAAACCGGACTTAGTGCAGTCAATG < 41bp 0.768554667353713 0.530146031470797 0.0595403 0.08553472 prediction 0.476817271765833 Functional Loss - FCF1 ENSG00000119616 CDS Human protein_coding chr14:75182760 chr14:75182761 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_70085 0 0 1 1 75182743 75182765 mRNA hsa-miR-145 FCF1 miRanda miRanda
5872 chr8 136659260 136659260 1 + G T UCEC 136659257 + 136659237 136659277 41 GCAAGAAGAGTGGACTAACTCAAGACACAAGGCACCTTCAG GCAAGAAGAGTGGACTAACTCAATACACAAGGCACCTTCAG < 41bp 0.915668179212552 0.677354836645989 0.88880634 0.18775895 prediction 0.476626685133126 Functional Loss - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136659257 chr8:136659260 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_70135 0 0 0 4 136659255 136659275 mRNA hsa-miR-18a KHDRBS3 miRanda miRanda
5873 chr8 136659260 136659260 1 + G T UCEC 136659257 + 136659237 136659277 41 GCAAGAAGAGTGGACTAACTCAAGACACAAGGCACCTTCAG GCAAGAAGAGTGGACTAACTCAATACACAAGGCACCTTCAG < 41bp 0.915668179212552 0.677354836645989 0.88880634 0.18775895 prediction 0.476626685133126 Functional Loss - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136659257 chr8:136659260 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_70135 0 0 0 4 136659244 136659266 mRNA hsa-miR-218 KHDRBS3 miRanda miRanda
5874 chr8 136659260 136659260 1 + G T UCEC 136659257 + 136659237 136659277 41 GCAAGAAGAGTGGACTAACTCAAGACACAAGGCACCTTCAG GCAAGAAGAGTGGACTAACTCAATACACAAGGCACCTTCAG < 41bp 0.915668179212552 0.677354836645989 0.88880634 0.18775895 prediction 0.476626685133126 Functional Loss - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136659257 chr8:136659260 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_70135 0 0 0 4 136659255 136659275 mRNA hsa-miR-18b KHDRBS3 miRanda miRanda
5875 chr8 136659260 136659260 1 + G T UCEC 136659257 + 136659237 136659277 41 GCAAGAAGAGTGGACTAACTCAAGACACAAGGCACCTTCAG GCAAGAAGAGTGGACTAACTCAATACACAAGGCACCTTCAG < 41bp 0.915668179212552 0.677354836645989 0.88880634 0.18775895 prediction 0.476626685133126 Functional Loss - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136659257 chr8:136659260 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_70135 0 0 0 4 136659245 136659267 mRNA hsa-miR-599 KHDRBS3 miRanda miRanda
5876 chr2 70015272 70015272 1 + C T UCEC 70015270 + 70015250 70015290 41 TGAGGAAGGCCATGAAAGGGCTCGGTATGTGTCCTGCTGGA TGAGGAAGGCCATGAAAGGGCTTGGTATGTGTCCTGCTGGA < 41bp 0.753739738058698 0.515435160427671 0.13584256 0.11400959 prediction 0.476609155262054 Functional Loss - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70015270 chr2:70015272 synonymous SNV . 0 23 hm5C_associated_SNPs_70143 0 0 1 1 70015249 70015273 mRNA hsa-miR-615-3p ANXA4 miRanda miRanda
5877 chr16 87678374 87678374 1 + C T SKCM 87678372 + 87678352 87678392 41 GAGTGGAAGAACGACAAACGCTCCGGCTTCGGCGTGAGCCA GAGTGGAAGAACGACAAACGCTTCGGCTTCGGCGTGAGCCA < 41bp 0.738274612480418 0.46863326467472 0.16054976 0.054216504 prediction 0.476549224960837 Functional Loss - JPH3 ENSG00000154118 CDS Human protein_coding chr16:87678372 chr16:87678374 nonsynonymous SNV 0.228 1 23 hm5C_associated_SNPs_70164 0 0 0 1 87678373 87678394 mRNA hsa-miR-149 JPH3 miRanda miRanda
5878 chr19 11796645 11796645 1 + A T SKCM 11796641 + 11796621 11796661 41 AATACATGGAAGAACTCACACTGGAGAGAAGTCCTATGCAG AATACATGGAAGAACTCACACTGGTGAGAAGTCCTATGCAG < 41bp 0.834694442112251 0.596448258177419 0.04809761 0.06920138 prediction 0.476492367869664 Functional Loss - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11796641 chr19:11796645 . . 0 25 hm5C_associated_SNPs_70184 0 0 0 4 11796622 11796645 mRNA hsa-miR-199a-5p ZNF833 miRanda miRanda
5879 chr19 11796645 11796645 1 + A T SKCM 11796641 + 11796621 11796661 41 AATACATGGAAGAACTCACACTGGAGAGAAGTCCTATGCAG AATACATGGAAGAACTCACACTGGTGAGAAGTCCTATGCAG < 41bp 0.834694442112251 0.596448258177419 0.04809761 0.06920138 prediction 0.476492367869664 Functional Loss - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11796641 chr19:11796645 . . 0 25 hm5C_associated_SNPs_70184 0 0 0 4 11796620 11796645 mRNA hsa-miR-199b-5p ZNF833 miRanda miRanda
5880 chr19 11796645 11796645 1 + A T SKCM 11796641 + 11796621 11796661 41 AATACATGGAAGAACTCACACTGGAGAGAAGTCCTATGCAG AATACATGGAAGAACTCACACTGGTGAGAAGTCCTATGCAG < 41bp 0.834694442112251 0.596448258177419 0.04809761 0.06920138 prediction 0.476492367869664 Functional Loss - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11796641 chr19:11796645 . . 0 25 hm5C_associated_SNPs_70184 0 0 0 4 11796643 11796663 mRNA hsa-miR-217 ZNF833 miRanda miRanda
5881 chr19 11796645 11796645 1 + A T SKCM 11796641 + 11796621 11796661 41 AATACATGGAAGAACTCACACTGGAGAGAAGTCCTATGCAG AATACATGGAAGAACTCACACTGGTGAGAAGTCCTATGCAG < 41bp 0.834694442112251 0.596448258177419 0.04809761 0.06920138 prediction 0.476492367869664 Functional Loss - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11796641 chr19:11796645 . . 0 25 hm5C_associated_SNPs_70184 0 0 0 4 11796636 11796661 mRNA hsa-miR-153 ZNF833 miRanda miRanda
5882 chr21 42729091 42729091 1 + G A LGG 42729088 + 42729068 42729108 41 TCTGGCTGGCCTGCAGAGATCCAGATAGAAGGCTGCATACC TCTGGCTGGCCTGCAGAGATCCAAATAGAAGGCTGCATACC < 41bp 0.75405344790007 0.515868909755503 0.87127686 0.40552306 prediction 0.476369076289133 Functional Loss - FAM3B ENSG00000183844 CDS Human protein_coding chr21:42729088 chr21:42729091 synonymous SNV . 0 24 hm5C_associated_SNPs_70216 0 0 1 1 42729068 42729092 mRNA hsa-miR-422a FAM3B miRanda miRanda
5883 chr1 45116466 45116466 1 + G A rs374199001 45116463 + 45116443 45116483 41 TGTGAGCTATCTGCCCCAGGCAGGCCTCGCCTCCAGCAGCC TGTGAGCTATCTGCCCCAGGCAGACCTCGCCTCCAGCAGCC < 41bp 0.738170782484663 0.498313659057313 0.3937551 0.23855665 prediction 0.476341564969326 Functional Loss - RNF220 ENSG00000187147 UTR3 Human protein_coding chr1:45116463 chr1:45116466 . . 0 24 hm5C_associated_SNPs_70227 0 0 1 1 45116448 45116467 mRNA hsa-miR-370 RNF220 miRanda miRanda
5884 chr14 71140662 71140662 1 + A T rs59106321 71140658 + 71140638 71140678 41 GACTTAGATATACAGGCTTACTGGAACTCCATTCACTGTGA GACTTAGATATACAGGCTTACTGGTACTCCATTCACTGTGA < 41bp 0.823083884941087 0.585283981517862 0.03283316 0.01502654 prediction 0.47559980684645 Functional Loss - TTC9 ENSG00000133985 UTR3 Human protein_coding chr14:71140658 chr14:71140662 . . 0 25 hm5C_associated_SNPs_70412 0 0 0 1 71140658 71140678 mRNA hsa-miR-128 TTC9 miRanda miRanda
5885 chr3 38125678 38125678 1 + G A STAD 38125675 + 38125655 38125695 41 ATTGCGCTGCAGAACACCACCACGACCAGCCGCTACCTGCG ATTGCGCTGCAGAACACCACCACAACCAGCCGCTACCTGCG < 41bp 0.737750785963605 0.494813586074738 0.18384379 0.11865088 prediction 0.475501571927211 Functional Loss - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38125675 chr3:38125678 synonymous SNV . 0 24 hm5C_associated_SNPs_70436 0 0 0 1 38125662 38125685 mRNA hsa-miR-138 DLEC1 miRanda miRanda
5886 chr11 65651072 65651072 1 + G A UCEC 65651069 + 65651049 65651089 41 AGAAACCGGATATGAAGCCCCGAGTCTCCTGCCCTCCCTGA AGAAACCGGATATGAAGCCCCGAATCTCCTGCCCTCCCTGA < 41bp 0.757358314822462 0.519667764004032 0.32832456 0.12064615 prediction 0.475381101636859 Functional Loss - CTSW ENSG00000172543 CDS Human protein_coding chr11:65651069 chr11:65651072 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_70472 0 0 0 1 65651060 65651080 mRNA hsa-miR-873 CTSW miRanda miRanda
5887 chr14 51347289 51347289 1 + G T LGG 51347287 + 51347267 51347307 41 CTTCATGGCAGTGCAGAACACAGGTCAGTGGCTCTGCTTAC CTTCATGGCAGTGCAGAACACATGTCAGTGGCTCTGCTTAC < 41bp 0.737661042449764 0.39217428550096 0.36817813 0.11636782 prediction 0.475322084899529 Functional Loss - ABHD12B ENSG00000131969 CDS Human protein_coding chr14:51347287 chr14:51347289 nonsynonymous SNV 0.968 4 23 hm5C_associated_SNPs_70489 0 0 0 3 51347274 51347289 mRNA hsa-miR-22 ABHD12B miRanda miRanda
5888 chr14 51347289 51347289 1 + G T LGG 51347287 + 51347267 51347307 41 CTTCATGGCAGTGCAGAACACAGGTCAGTGGCTCTGCTTAC CTTCATGGCAGTGCAGAACACATGTCAGTGGCTCTGCTTAC < 41bp 0.737661042449764 0.39217428550096 0.36817813 0.11636782 prediction 0.475322084899529 Functional Loss - ABHD12B ENSG00000131969 CDS Human protein_coding chr14:51347287 chr14:51347289 nonsynonymous SNV 0.968 4 23 hm5C_associated_SNPs_70489 0 0 0 3 51347285 51347289 mRNA hsa-miR-431 ABHD12B miRanda miRanda
5889 chr14 51347289 51347289 1 + G T LGG 51347287 + 51347267 51347307 41 CTTCATGGCAGTGCAGAACACAGGTCAGTGGCTCTGCTTAC CTTCATGGCAGTGCAGAACACATGTCAGTGGCTCTGCTTAC < 41bp 0.737661042449764 0.39217428550096 0.36817813 0.11636782 prediction 0.475322084899529 Functional Loss - ABHD12B ENSG00000131969 CDS Human protein_coding chr14:51347287 chr14:51347289 nonsynonymous SNV 0.968 4 23 hm5C_associated_SNPs_70489 0 0 0 3 51347273 51347289 mRNA hsa-miR-874 ABHD12B miRanda miRanda
5890 chr22 35811869 35811869 1 + G A COAD 35811866 + 35811846 35811886 41 AGCGCAGCTGGACTGACAGCCTCGGTGATGAGGGACCCTTC AGCGCAGCTGGACTGACAGCCTCAGTGATGAGGGACCCTTC < 41bp 0.74326134721951 0.505631734806977 0.19794187 0.14944151 prediction 0.475259224825067 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35811866 chr22:35811869 synonymous SNV . 0 24 hm5C_associated_SNPs_70511 0 0 1 1 35811848 35811869 mRNA hsa-miR-485-5p MCM5 miRanda miRanda
5891 chr2 234363497 234363497 1 + G A UCEC 234363494 + 234363474 234363514 41 CCCTGGACTTTAACAACAAGCGCGATGAGCACCCAGAGAAG CCCTGGACTTTAACAACAAGCGCAATGAGCACCCAGAGAAG < 41bp 0.747263166123993 0.509644999424031 0.15431821 0.06031558 prediction 0.475236333399924 Functional Loss - DGKD ENSG00000077044 CDS Human protein_coding chr2:234363494 chr2:234363497 nonsynonymous SNV 0.660 4 24 hm5C_associated_SNPs_70521 0 0 1 2 234363491 234363512 mRNA hsa-miR-330-5p DGKD miRanda miRanda
5892 chr2 234363497 234363497 1 + G A UCEC 234363494 + 234363474 234363514 41 CCCTGGACTTTAACAACAAGCGCGATGAGCACCCAGAGAAG CCCTGGACTTTAACAACAAGCGCAATGAGCACCCAGAGAAG < 41bp 0.747263166123993 0.509644999424031 0.15431821 0.06031558 prediction 0.475236333399924 Functional Loss - DGKD ENSG00000077044 CDS Human protein_coding chr2:234363494 chr2:234363497 nonsynonymous SNV 0.660 4 24 hm5C_associated_SNPs_70521 0 0 1 2 234363494 234363512 mRNA hsa-miR-326 DGKD miRanda miRanda
5893 chr10 73472536 73472536 1 - C A UCEC 73472538 - 73472518 73472558 41 GTGGCCTTCAGGGATGTCCTCAGGGACGCTGGCCTCATAGC GTGGCCTTCAGGGATGTCCTCATGGACGCTGGCCTCATAGC < 41bp 0.87264303562462 0.635050545918397 0.9464848 0.6948075 prediction 0.475184979412446 Functional Loss - CDH23 ENSG00000107736 CDS Human protein_coding chr10:73472538 chr10:73472536 nonsynonymous SNV 0.951 2 23 hm5C_associated_SNPs_70534 0 0 0 2 73472533 73472554 mRNA hsa-miR-125b C10orf105 miRanda miRanda
5894 chr10 73472536 73472536 1 - C A UCEC 73472538 - 73472518 73472558 41 GTGGCCTTCAGGGATGTCCTCAGGGACGCTGGCCTCATAGC GTGGCCTTCAGGGATGTCCTCATGGACGCTGGCCTCATAGC < 41bp 0.87264303562462 0.635050545918397 0.9464848 0.6948075 prediction 0.475184979412446 Functional Loss - CDH23 ENSG00000107736 CDS Human protein_coding chr10:73472538 chr10:73472536 nonsynonymous SNV 0.951 2 23 hm5C_associated_SNPs_70534 0 0 0 2 73472533 73472559 mRNA hsa-miR-125a-5p C10orf105 miRanda miRanda
5895 chr11 85968606 85968606 1 + G T UCEC 85968603 + 85968583 85968623 41 CAATGAGCTGAAATTCCATCCAAGAGATCCAAATCTTCTCC CAATGAGCTGAAATTCCATCCAATAGATCCAAATCTTCTCC < 41bp 0.737529601507053 0.358726030953769 0.18017626 0.07197219 prediction 0.475059203014107 Functional Loss - EED ENSG00000074266 CDS Human protein_coding chr11:85968603 chr11:85968606 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_70564 0 0 1 3 85968596 85968623 mRNA hsa-miR-539 EED miRanda miRanda
5896 chr11 85968606 85968606 1 + G T UCEC 85968603 + 85968583 85968623 41 CAATGAGCTGAAATTCCATCCAAGAGATCCAAATCTTCTCC CAATGAGCTGAAATTCCATCCAATAGATCCAAATCTTCTCC < 41bp 0.737529601507053 0.358726030953769 0.18017626 0.07197219 prediction 0.475059203014107 Functional Loss - EED ENSG00000074266 CDS Human protein_coding chr11:85968603 chr11:85968606 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_70564 0 0 1 3 85968590 85968613 mRNA hsa-miR-876-5p EED miRanda miRanda
5897 chr11 85968606 85968606 1 + G T UCEC 85968603 + 85968583 85968623 41 CAATGAGCTGAAATTCCATCCAAGAGATCCAAATCTTCTCC CAATGAGCTGAAATTCCATCCAATAGATCCAAATCTTCTCC < 41bp 0.737529601507053 0.358726030953769 0.18017626 0.07197219 prediction 0.475059203014107 Functional Loss - EED ENSG00000074266 CDS Human protein_coding chr11:85968603 chr11:85968606 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_70564 0 0 1 3 85968590 85968612 mRNA hsa-miR-216b EED miRanda miRanda
5898 chr16 30092622 30092622 1 + G A UCEC 30092619 + 30092599 30092639 41 AGCAACGTGCAGAGGGTGGACTCGCCAGTCACAGTGAGTAC AGCAACGTGCAGAGGGTGGACTCACCAGTCACAGTGAGTAC < 41bp 0.737400031475818 0.498604250996057 0.21172035 0.044093728 prediction 0.474800062951637 Functional Loss - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30092619 chr16:30092622 synonymous SNV . 0 24 hm5C_associated_SNPs_70632 0 0 1 2 30092609 30092631 mRNA hsa-miR-134 PPP4C miRanda miRanda
5899 chr16 30092622 30092622 1 + G A UCEC 30092619 + 30092599 30092639 41 AGCAACGTGCAGAGGGTGGACTCGCCAGTCACAGTGAGTAC AGCAACGTGCAGAGGGTGGACTCACCAGTCACAGTGAGTAC < 41bp 0.737400031475818 0.498604250996057 0.21172035 0.044093728 prediction 0.474800062951637 Functional Loss - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30092619 chr16:30092622 synonymous SNV . 0 24 hm5C_associated_SNPs_70632 0 0 1 2 30092611 30092631 mRNA hsa-miR-378 PPP4C miRanda miRanda
5900 chr7 142637695 142637695 1 + C T rs549559247 142637693 + 142637673 142637713 41 GACCCTCCCTCCCTCCTGGGCTCCAGGTCACAACTCCCAAA GACCCTCCCTCCCTCCTGGGCTTCAGGTCACAACTCCCAAA < 41bp 0.743477592781381 0.506130518967568 0.07545468 0.029527634 prediction 0.474694147627626 Functional Loss - C7orf34 ENSG00000165131 UTR3 Human protein_coding chr7:142637693 chr7:142637695 . . 0 23 hm5C_associated_SNPs_70659 0 0 0 3 142637689 142637710 mRNA hsa-miR-122 C7orf34 miRanda miRanda
5901 chr7 142637695 142637695 1 + C T rs549559247 142637693 + 142637673 142637713 41 GACCCTCCCTCCCTCCTGGGCTCCAGGTCACAACTCCCAAA GACCCTCCCTCCCTCCTGGGCTTCAGGTCACAACTCCCAAA < 41bp 0.743477592781381 0.506130518967568 0.07545468 0.029527634 prediction 0.474694147627626 Functional Loss - C7orf34 ENSG00000165131 UTR3 Human protein_coding chr7:142637693 chr7:142637695 . . 0 23 hm5C_associated_SNPs_70659 0 0 0 3 142637682 142637704 mRNA hsa-miR-134 C7orf34 miRanda miRanda
5902 chr7 142637695 142637695 1 + C T rs549559247 142637693 + 142637673 142637713 41 GACCCTCCCTCCCTCCTGGGCTCCAGGTCACAACTCCCAAA GACCCTCCCTCCCTCCTGGGCTTCAGGTCACAACTCCCAAA < 41bp 0.743477592781381 0.506130518967568 0.07545468 0.029527634 prediction 0.474694147627626 Functional Loss - C7orf34 ENSG00000165131 UTR3 Human protein_coding chr7:142637693 chr7:142637695 . . 0 23 hm5C_associated_SNPs_70659 0 0 0 3 142637683 142637706 mRNA hsa-miR-758 C7orf34 miRanda miRanda
5903 chr7 98984375 98984375 1 + G T UCEC 98984372 + 98984352 98984392 41 AAGAGCGGTGCCAAATGGACCAAGGTGCACGAGCTCAAGGA AAGAGCGGTGCCAAATGGACCAATGTGCACGAGCTCAAGGA < 41bp 0.737346906067433 0.333761832054186 0.3731488 0.03918603 prediction 0.474693812134865 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98984372 chr7:98984375 nonsynonymous SNV 0.673 1 24 hm5C_associated_SNPs_70660 0 0 1 2 98984354 98984375 mRNA hsa-miR-133a ARPC1A miRanda miRanda
5904 chr7 98984375 98984375 1 + G T UCEC 98984372 + 98984352 98984392 41 AAGAGCGGTGCCAAATGGACCAAGGTGCACGAGCTCAAGGA AAGAGCGGTGCCAAATGGACCAATGTGCACGAGCTCAAGGA < 41bp 0.737346906067433 0.333761832054186 0.3731488 0.03918603 prediction 0.474693812134865 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98984372 chr7:98984375 nonsynonymous SNV 0.673 1 24 hm5C_associated_SNPs_70660 0 0 1 2 98984354 98984375 mRNA hsa-miR-133b ARPC1A miRanda miRanda
5905 chr17 31322436 31322436 1 + C T PAAD 31322434 + 31322414 31322454 41 TCCCCTTTCCCAGGGGTGCACTCAAGCCCTGTTTCTTCTCC TCCCCTTTCCCAGGGGTGCACTTAAGCCCTGTTTCTTCTCC < 41bp 0.737306285249358 0.480415846374972 0.38586673 0.28569913 prediction 0.474612570498716 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31322434 chr17:31322436 nonsynonymous SNV 0.010 1 23 hm5C_associated_SNPs_70685 0 0 0 1 31322427 31322444 mRNA hsa-miR-296-3p SPACA3 miRanda miRanda
5906 chr19 3293399 3293399 1 + C T SKCM 3293397 + 3293377 3293417 41 TCCAGATCGGCATGAAGAGGCTCAAAGTCCAGCTGAAGCGG TCCAGATCGGCATGAAGAGGCTTAAAGTCCAGCTGAAGCGG < 41bp 0.737302267343379 0.463902943871604 0.69370854 0.23581201 prediction 0.474604534686757 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3293397 chr19:3293399 synonymous SNV . 0 23 hm5C_associated_SNPs_70686 0 0 0 2 3293389 3293409 mRNA hsa-miR-378 CELF5 miRanda miRanda
5907 chr19 3293399 3293399 1 + C T SKCM 3293397 + 3293377 3293417 41 TCCAGATCGGCATGAAGAGGCTCAAAGTCCAGCTGAAGCGG TCCAGATCGGCATGAAGAGGCTTAAAGTCCAGCTGAAGCGG < 41bp 0.737302267343379 0.463902943871604 0.69370854 0.23581201 prediction 0.474604534686757 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3293397 chr19:3293399 synonymous SNV . 0 23 hm5C_associated_SNPs_70686 0 0 0 2 3293388 3293409 mRNA hsa-miR-422a CELF5 miRanda miRanda
5908 chr3 113563455 113563455 1 + G T LUAD 113563452 + 113563432 113563472 41 ATAATGTGGTAGTTAAAAAACAGGGGCCAAATTTACATAAT ATAATGTGGTAGTTAAAAAACAGTGGCCAAATTTACATAAT < 41bp 0.737236567526134 0.366528172203681 0.89101493 0.43082458 prediction 0.474473135052269 Functional Loss - GRAMD1C ENSG00000178075 CDS Human protein_coding chr3:113563452 chr3:113563455 nonsynonymous SNV 0.952 3 24 hm5C_associated_SNPs_70732 0 0 0 4 113563436 113563458 mRNA hsa-miR-10a GRAMD1C miRanda miRanda
5909 chr3 113563455 113563455 1 + G T LUAD 113563452 + 113563432 113563472 41 ATAATGTGGTAGTTAAAAAACAGGGGCCAAATTTACATAAT ATAATGTGGTAGTTAAAAAACAGTGGCCAAATTTACATAAT < 41bp 0.737236567526134 0.366528172203681 0.89101493 0.43082458 prediction 0.474473135052269 Functional Loss - GRAMD1C ENSG00000178075 CDS Human protein_coding chr3:113563452 chr3:113563455 nonsynonymous SNV 0.952 3 24 hm5C_associated_SNPs_70732 0 0 0 4 113563436 113563458 mRNA hsa-miR-10b GRAMD1C miRanda miRanda
5910 chr3 113563455 113563455 1 + G T LUAD 113563452 + 113563432 113563472 41 ATAATGTGGTAGTTAAAAAACAGGGGCCAAATTTACATAAT ATAATGTGGTAGTTAAAAAACAGTGGCCAAATTTACATAAT < 41bp 0.737236567526134 0.366528172203681 0.89101493 0.43082458 prediction 0.474473135052269 Functional Loss - GRAMD1C ENSG00000178075 CDS Human protein_coding chr3:113563452 chr3:113563455 nonsynonymous SNV 0.952 3 24 hm5C_associated_SNPs_70732 0 0 0 4 113563440 113563461 mRNA hsa-miR-328 GRAMD1C miRanda miRanda
5911 chr3 113563455 113563455 1 + G T LUAD 113563452 + 113563432 113563472 41 ATAATGTGGTAGTTAAAAAACAGGGGCCAAATTTACATAAT ATAATGTGGTAGTTAAAAAACAGTGGCCAAATTTACATAAT < 41bp 0.737236567526134 0.366528172203681 0.89101493 0.43082458 prediction 0.474473135052269 Functional Loss - GRAMD1C ENSG00000178075 CDS Human protein_coding chr3:113563452 chr3:113563455 nonsynonymous SNV 0.952 3 24 hm5C_associated_SNPs_70732 0 0 0 4 113563435 113563457 mRNA hsa-miR-339-5p GRAMD1C miRanda miRanda
5912 chr1 162773287 162773287 1 + C T SKCM 162773285 + 162773265 162773305 41 TTTGACATATGGAATTCTGCCTCCGTTTATATGGACGCTGT TTTGACATATGGAATTCTGCCTTCGTTTATATGGACGCTGT < 41bp 0.737188733063368 0.44889558206637 0.06283596 0.043660402 prediction 0.474377466126736 Functional Loss - HSD17B7 ENSG00000132196 CDS Human protein_coding chr1:162773285 chr1:162773287 nonsynonymous SNV 0.039 0 23 hm5C_associated_SNPs_70760 0 0 1 1 162773283 162773309 mRNA hsa-miR-421 HSD17B7 miRanda miRanda
5913 chr1 95709918 95709918 1 + G T UCEC 95709916 + 95709896 95709936 41 CTGAACAGTTGACCAGGGCCCAGTGTGTGACTGTGAAAGAG CTGAACAGTTGACCAGGGCCCATTGTGTGACTGTGAAAGAG < 41bp 0.737120358075561 0.413114924410735 0.12090886 0.039943397 prediction 0.474240716151122 Functional Loss - RWDD3 ENSG00000122481 CDS Human protein_coding chr1:95709916 chr1:95709918 nonsynonymous SNV 0.926 4 23 hm5C_associated_SNPs_70783 0 0 1 5 95709912 95709932 mRNA hsa-miR-27a RWDD3 miRanda miRanda
5914 chr1 95709918 95709918 1 + G T UCEC 95709916 + 95709896 95709936 41 CTGAACAGTTGACCAGGGCCCAGTGTGTGACTGTGAAAGAG CTGAACAGTTGACCAGGGCCCATTGTGTGACTGTGAAAGAG < 41bp 0.737120358075561 0.413114924410735 0.12090886 0.039943397 prediction 0.474240716151122 Functional Loss - RWDD3 ENSG00000122481 CDS Human protein_coding chr1:95709916 chr1:95709918 nonsynonymous SNV 0.926 4 23 hm5C_associated_SNPs_70783 0 0 1 5 95709912 95709932 mRNA hsa-miR-27b RWDD3 miRanda miRanda
5915 chr1 95709918 95709918 1 + G T UCEC 95709916 + 95709896 95709936 41 CTGAACAGTTGACCAGGGCCCAGTGTGTGACTGTGAAAGAG CTGAACAGTTGACCAGGGCCCATTGTGTGACTGTGAAAGAG < 41bp 0.737120358075561 0.413114924410735 0.12090886 0.039943397 prediction 0.474240716151122 Functional Loss - RWDD3 ENSG00000122481 CDS Human protein_coding chr1:95709916 chr1:95709918 nonsynonymous SNV 0.926 4 23 hm5C_associated_SNPs_70783 0 0 1 5 95709908 95709931 mRNA hsa-miR-128 RWDD3 miRanda miRanda
5916 chr1 95709918 95709918 1 + G T UCEC 95709916 + 95709896 95709936 41 CTGAACAGTTGACCAGGGCCCAGTGTGTGACTGTGAAAGAG CTGAACAGTTGACCAGGGCCCATTGTGTGACTGTGAAAGAG < 41bp 0.737120358075561 0.413114924410735 0.12090886 0.039943397 prediction 0.474240716151122 Functional Loss - RWDD3 ENSG00000122481 CDS Human protein_coding chr1:95709916 chr1:95709918 nonsynonymous SNV 0.926 4 23 hm5C_associated_SNPs_70783 0 0 1 5 95709905 95709926 mRNA hsa-miR-377 RWDD3 miRanda miRanda
5917 chr1 95709918 95709918 1 + G T UCEC 95709916 + 95709896 95709936 41 CTGAACAGTTGACCAGGGCCCAGTGTGTGACTGTGAAAGAG CTGAACAGTTGACCAGGGCCCATTGTGTGACTGTGAAAGAG < 41bp 0.737120358075561 0.413114924410735 0.12090886 0.039943397 prediction 0.474240716151122 Functional Loss - RWDD3 ENSG00000122481 CDS Human protein_coding chr1:95709916 chr1:95709918 nonsynonymous SNV 0.926 4 23 hm5C_associated_SNPs_70783 0 0 1 5 95709902 95709927 mRNA hsa-miR-505 RWDD3 miRanda miRanda
5918 chr1 153004868 153004868 1 + T C LUAD 153004867 + 153004847 153004887 41 CTTGCACCCCACCCCCTCAGCTTCAGCAGCAGCAGGTGAAA CTTGCACCCCACCCCCTCAGCCTCAGCAGCAGCAGGTGAAA < 41bp 0.73705505111278 0.492915718298 0.038346708 0.014882833 prediction 0.47411010222556 Functional Loss - SPRR1B ENSG00000169469 CDS Human protein_coding chr1:153004867 chr1:153004868 nonsynonymous SNV 0.399 0 22 hm5C_associated_SNPs_70826 0 0 0 1 153004862 153004883 mRNA hsa-miR-370 SPRR1B miRanda miRanda
5919 chr7 77979501 77979501 1 + A T rs141872914 77979497 + 77979477 77979517 41 ATTAAAAGTGGCAAAGGACTCAGGATATTTAAGGATGAGAT ATTAAAAGTGGCAAAGGACTCAGGTTATTTAAGGATGAGAT < 41bp 0.806188759061181 0.569149845072983 0.8740876 0.6383023 prediction 0.474077827976397 Functional Loss - RPL13AP17 ENSG00000231322 ncRNA_exonic Human transcribed_processed_pseudogene chr7:77979497 chr7:77979501 . . 0 25 hm5C_associated_SNPs_70837 0 0 0 1 77979499 77979519 mRNA hsa-miR-216a RPL13AP17 miRanda miRanda
5920 chr11 6413193 6413193 1 + A C OV 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCCCCGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.48326132292345 0.19992825 0.1883949 prediction 0.473899123232198 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413193 nonsynonymous SNV 0.637 4 22 hm5C_associated_SNPs_70889 0 0 0 12 6413188 6413208 mRNA hsa-miR-302a SMPD1 miRanda miRanda
5921 chr11 6413193 6413193 1 + A C OV 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCCCCGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.48326132292345 0.19992825 0.1883949 prediction 0.473899123232198 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413193 nonsynonymous SNV 0.637 4 22 hm5C_associated_SNPs_70889 0 0 0 12 6413184 6413208 mRNA hsa-miR-302b SMPD1 miRanda miRanda
5922 chr11 6413193 6413193 1 + A C OV 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCCCCGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.48326132292345 0.19992825 0.1883949 prediction 0.473899123232198 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413193 nonsynonymous SNV 0.637 4 22 hm5C_associated_SNPs_70889 0 0 0 12 6413184 6413208 mRNA hsa-miR-302c SMPD1 miRanda miRanda
5923 chr11 6413193 6413193 1 + A C OV 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCCCCGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.48326132292345 0.19992825 0.1883949 prediction 0.473899123232198 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413193 nonsynonymous SNV 0.637 4 22 hm5C_associated_SNPs_70889 0 0 0 12 6413186 6413208 mRNA hsa-miR-302d SMPD1 miRanda miRanda
5924 chr11 6413193 6413193 1 + A C OV 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCCCCGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.48326132292345 0.19992825 0.1883949 prediction 0.473899123232198 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413193 nonsynonymous SNV 0.637 4 22 hm5C_associated_SNPs_70889 0 0 0 12 6413186 6413208 mRNA hsa-miR-372 SMPD1 miRanda miRanda
5925 chr11 6413193 6413193 1 + A C OV 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCCCCGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.48326132292345 0.19992825 0.1883949 prediction 0.473899123232198 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413193 nonsynonymous SNV 0.637 4 22 hm5C_associated_SNPs_70889 0 0 0 12 6413186 6413208 mRNA hsa-miR-373 SMPD1 miRanda miRanda
5926 chr11 6413193 6413193 1 + A C OV 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCCCCGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.48326132292345 0.19992825 0.1883949 prediction 0.473899123232198 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413193 nonsynonymous SNV 0.637 4 22 hm5C_associated_SNPs_70889 0 0 0 12 6413188 6413208 mRNA hsa-miR-520e SMPD1 miRanda miRanda
5927 chr11 6413193 6413193 1 + A C OV 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCCCCGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.48326132292345 0.19992825 0.1883949 prediction 0.473899123232198 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413193 nonsynonymous SNV 0.637 4 22 hm5C_associated_SNPs_70889 0 0 0 12 6413186 6413208 mRNA hsa-miR-520a-3p SMPD1 miRanda miRanda
5928 chr11 6413193 6413193 1 + A C OV 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCCCCGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.48326132292345 0.19992825 0.1883949 prediction 0.473899123232198 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413193 nonsynonymous SNV 0.637 4 22 hm5C_associated_SNPs_70889 0 0 0 12 6413188 6413208 mRNA hsa-miR-520b SMPD1 miRanda miRanda
5929 chr11 6413193 6413193 1 + A C OV 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCCCCGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.48326132292345 0.19992825 0.1883949 prediction 0.473899123232198 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413193 nonsynonymous SNV 0.637 4 22 hm5C_associated_SNPs_70889 0 0 0 12 6413187 6413208 mRNA hsa-miR-520c-3p SMPD1 miRanda miRanda
5930 chr11 6413193 6413193 1 + A C OV 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCCCCGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.48326132292345 0.19992825 0.1883949 prediction 0.473899123232198 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413193 nonsynonymous SNV 0.637 4 22 hm5C_associated_SNPs_70889 0 0 0 12 6413186 6413208 mRNA hsa-miR-520d-3p SMPD1 miRanda miRanda
5931 chr11 6413193 6413193 1 + A C OV 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCCCCGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.48326132292345 0.19992825 0.1883949 prediction 0.473899123232198 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413193 nonsynonymous SNV 0.637 4 22 hm5C_associated_SNPs_70889 0 0 0 12 6413192 6413208 mRNA hsa-miR-302e SMPD1 miRanda miRanda
5932 chr2 173369391 173369391 1 + C T rs114005087 173369389 + 173369369 173369409 41 CCTGCTGCGCAGACGTCCATCACGTTAGCTGTCCCACATCA CCTGCTGCGCAGACGTCCATCATGTTAGCTGTCCCACATCA < 41bp 0.746255240125259 0.509315532779059 0.42370307 0.42669046 prediction 0.473879414692399 Functional Loss - ITGA6 ENSG00000225205 ncRNA_intronic Human antisense chr2:173369389 chr2:173369391 . . 0 23 hm5C_associated_SNPs_70893 1 0 1 1 173369387 173369408 mRNA hsa-miR-299-3p ITGA6 miRanda miRanda
5933 chr10 127530320 127530320 1 + A C LUAD 127530319 + 127530299 127530339 41 TCATTAAGGATACCTGTTACCATGGCTGCGATTGTTAGCAC TCATTAAGGATACCTGTTACCCTGGCTGCGATTGTTAGCAC < 41bp 0.79048864066489 0.553579965034716 0.6191825 0.12336865 prediction 0.473817351260348 Functional Loss - DHX32 ENSG00000089876 CDS Human protein_coding chr10:127530319 chr10:127530320 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_70914 0 0 1 3 127530306 127530328 mRNA hsa-miR-103 BCCIP miRanda miRanda
5934 chr10 127530320 127530320 1 + A C LUAD 127530319 + 127530299 127530339 41 TCATTAAGGATACCTGTTACCATGGCTGCGATTGTTAGCAC TCATTAAGGATACCTGTTACCCTGGCTGCGATTGTTAGCAC < 41bp 0.79048864066489 0.553579965034716 0.6191825 0.12336865 prediction 0.473817351260348 Functional Loss - DHX32 ENSG00000089876 CDS Human protein_coding chr10:127530319 chr10:127530320 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_70914 0 0 1 3 127530306 127530328 mRNA hsa-miR-107 BCCIP miRanda miRanda
5935 chr10 127530320 127530320 1 + A C LUAD 127530319 + 127530299 127530339 41 TCATTAAGGATACCTGTTACCATGGCTGCGATTGTTAGCAC TCATTAAGGATACCTGTTACCCTGGCTGCGATTGTTAGCAC < 41bp 0.79048864066489 0.553579965034716 0.6191825 0.12336865 prediction 0.473817351260348 Functional Loss - DHX32 ENSG00000089876 CDS Human protein_coding chr10:127530319 chr10:127530320 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_70914 0 0 1 3 127530319 127530342 mRNA hsa-miR-373 BCCIP miRanda miRanda
5936 chr6 131962640 131962640 1 + G T CESC 131962637 + 131962617 131962657 41 TCATGTCACTTGGATTAGGCCTGGGGCTTGGACTCAGGAAA TCATGTCACTTGGATTAGGCCTGTGGCTTGGACTCAGGAAA < 41bp 0.73689807037629 0.345461672810033 0.41107056 0.24582478 prediction 0.47379614075258 Functional Loss - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:131962637 chr6:131962640 nonsynonymous SNV 0.854 2 24 hm5C_associated_SNPs_70918 0 0 1 1 131962639 131962663 mRNA hsa-miR-145 ENPP3 miRanda miRanda
5937 chr6 167752274 167752274 1 + C T rs34350976 167752272 + 167752252 167752292 41 TCCCAGGCGAGGCCGCCCAACACCAACACTGGAGAAGAAGG TCCCAGGCGAGGCCGCCCAACATCAACACTGGAGAAGAAGG < 41bp 0.73689308610074 0.471269380449317 0.142481 0.12329155 prediction 0.473786172201479 Functional Loss - TTLL2 ENSG00000120440 CDS Human protein_coding chr6:167752272 chr6:167752274 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_70921 0 0 0 2 167752262 167752284 mRNA hsa-miR-199a-5p TTLL2 miRanda miRanda
5938 chr6 167752274 167752274 1 + C T rs34350976 167752272 + 167752252 167752292 41 TCCCAGGCGAGGCCGCCCAACACCAACACTGGAGAAGAAGG TCCCAGGCGAGGCCGCCCAACATCAACACTGGAGAAGAAGG < 41bp 0.73689308610074 0.471269380449317 0.142481 0.12329155 prediction 0.473786172201479 Functional Loss - TTLL2 ENSG00000120440 CDS Human protein_coding chr6:167752272 chr6:167752274 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_70921 0 0 0 2 167752262 167752284 mRNA hsa-miR-199b-5p TTLL2 miRanda miRanda
5939 chr6 55039461 55039461 1 + G T GBM 55039458 + 55039438 55039478 41 CTTCGGAGCTGAATGAAACTCAAGAGCCCTTTTTAAACCCC CTTCGGAGCTGAATGAAACTCAATAGCCCTTTTTAAACCCC < 41bp 0.91573299222903 0.67897682900689 0.4397209 0.29880226 prediction 0.473512326444281 Functional Loss - HCRTR2 ENSG00000137252 CDS Human protein_coding chr6:55039458 chr6:55039461 stopgain 1.000 1 24 hm5C_associated_SNPs_70991 0 0 0 1 55039460 55039481 mRNA hsa-miR-491-5p HCRTR2 miRanda miRanda
5940 chr5 121780395 121780395 1 + T C LIHC 121780394 + 121780374 121780414 41 GACCTGCATGTCGCTGGCCTCTCAAGTGGTGAAGTTAACCA GACCTGCATGTCGCTGGCCTCCCAAGTGGTGAAGTTAACCA < 41bp 0.804266029871027 0.567564439326649 0.81164026 0.36959547 prediction 0.473403181088758 Functional Loss - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121780394 chr5:121780395 synonymous SNV . 0 22 hm5C_associated_SNPs_71016 0 0 0 1 121780385 121780406 mRNA hsa-miR-197 SNCAIP miRanda miRanda
5941 chr1 16767271 16767271 1 + G A STAD 16767268 + 16767248 16767288 41 GGCGTCGCGATGGAGGAGAGCGGGTACGAGTCGGTGCTCTG GGCGTCGCGATGGAGGAGAGCGGATACGAGTCGGTGCTCTG < 41bp 0.747483867128282 0.510802581702737 0.8798852 0.81544113 prediction 0.473362570851089 Functional Loss - NECAP2;NECAP2 ENSG00000157191;ENSG00000157191 exonic;splicing Human other chr1:16767268 chr1:16767271 synonymous SNV 0.423 0 24 hm5C_associated_SNPs_71026 0 0 1 2 16767263 16767286 mRNA hsa-miR-29b NECAP2 miRanda miRanda
5942 chr1 16767271 16767271 1 + G A STAD 16767268 + 16767248 16767288 41 GGCGTCGCGATGGAGGAGAGCGGGTACGAGTCGGTGCTCTG GGCGTCGCGATGGAGGAGAGCGGATACGAGTCGGTGCTCTG < 41bp 0.747483867128282 0.510802581702737 0.8798852 0.81544113 prediction 0.473362570851089 Functional Loss - NECAP2;NECAP2 ENSG00000157191;ENSG00000157191 exonic;splicing Human other chr1:16767268 chr1:16767271 synonymous SNV 0.423 0 24 hm5C_associated_SNPs_71026 0 0 1 2 16767264 16767286 mRNA hsa-miR-29c NECAP2 miRanda miRanda
5943 chr2 202149834 202149834 1 + G T ESCA 202149832 + 202149812 202149852 41 CTTGTCAGGGGGATAACTACCAGAAAGGTATACCTGTTGAG CTTGTCAGGGGGATAACTACCATAAAGGTATACCTGTTGAG < 41bp 0.736660468957639 0.445308214947028 0.787957 0.19906268 prediction 0.473320937915279 Functional Loss - CASP8 ENSG00000064012 CDS Human protein_coding chr2:202149832 chr2:202149834 nonsynonymous SNV 0.816 1 23 hm5C_associated_SNPs_71036 0 0 0 1 202149830 202149852 mRNA hsa-miR-421 CASP8 miRanda miRanda
5944 chr1 207077210 207077210 1 + A T rs3093438 207077206 + 207077186 207077226 41 GCTAATAAAAGACAACATAACTCAAGTCTGGCAGACTTTCT GCTAATAAAAGACAACATAACTCATGTCTGGCAGACTTTCT < 41bp 0.843684093761896 0.607095523411819 0.028550476 0.03202668 prediction 0.473177140700155 Functional Loss - FCMR;IL24 ENSG00000162892 UTR3 Human protein_coding chr1:207077206 chr1:207077210 . . 0 25 hm5C_associated_SNPs_71077 0 0 0 2 207077199 207077223 mRNA hsa-miR-22 IL24 miRanda miRanda
5945 chr1 207077210 207077210 1 + A T rs3093438 207077206 + 207077186 207077226 41 GCTAATAAAAGACAACATAACTCAAGTCTGGCAGACTTTCT GCTAATAAAAGACAACATAACTCATGTCTGGCAGACTTTCT < 41bp 0.843684093761896 0.607095523411819 0.028550476 0.03202668 prediction 0.473177140700155 Functional Loss - FCMR;IL24 ENSG00000162892 UTR3 Human protein_coding chr1:207077206 chr1:207077210 . . 0 25 hm5C_associated_SNPs_71077 0 0 0 2 207077199 207077222 mRNA hsa-miR-346 IL24 miRanda miRanda
5946 chr1 154947386 154947386 1 + G C BLCA 154947385 + 154947365 154947405 41 ATAGAATTGGCGCATGCGTACGAGGTGCGAACGGGCAATGG ATAGAATTGGCGCATGCGTACCAGGTGCGAACGGGCAATGG < 41bp 0.736564210494204 0.433966924920461 0.8739375 0.45862672 prediction 0.473128420988407 Functional Loss - CKS1B ENSG00000173207 CDS Human protein_coding chr1:154947385 chr1:154947386 synonymous SNV . 0 22 hm5C_associated_SNPs_71092 0 0 1 2 154947383 154947388 mRNA hsa-miR-103 CKS1B miRanda miRanda
5947 chr1 154947386 154947386 1 + G C BLCA 154947385 + 154947365 154947405 41 ATAGAATTGGCGCATGCGTACGAGGTGCGAACGGGCAATGG ATAGAATTGGCGCATGCGTACCAGGTGCGAACGGGCAATGG < 41bp 0.736564210494204 0.433966924920461 0.8739375 0.45862672 prediction 0.473128420988407 Functional Loss - CKS1B ENSG00000173207 CDS Human protein_coding chr1:154947385 chr1:154947386 synonymous SNV . 0 22 hm5C_associated_SNPs_71092 0 0 1 2 154947383 154947388 mRNA hsa-miR-107 CKS1B miRanda miRanda
5948 chr12 52283170 52283170 1 + G A GBM 52283167 + 52283147 52283187 41 GCCCTGCAGGCCACGTGCCTCTAGTGAGTCTCCTGCTCAAC GCCCTGCAGGCCACGTGCCTCTAATGAGTCTCCTGCTCAAC < 41bp 0.736493330766472 0.490707602441989 0.27628404 0.16032243 prediction 0.472986661532944 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52283167 chr12:52283170 nonsynonymous SNV 0.803 2 24 hm5C_associated_SNPs_71131 0 0 0 1 52283158 52283181 mRNA hsa-miR-28-5p ANKRD33 miRanda miRanda
5949 chr15 41021022 41021022 1 + G A SKCM 41021019 + 41020999 41021039 41 ATCAGCCATGATGGTAGAATCTAGGTATGTGTTCAGTATAA ATCAGCCATGATGGTAGAATCTAAGTATGTGTTCAGTATAA < 41bp 0.738293954185872 0.501830336521685 0.23257792 0.14132485 prediction 0.472927235328374 Functional Loss - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41021019 chr15:41021022 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_71148 0 0 1 4 41021013 41021022 mRNA hsa-miR-148a RAD51 miRanda miRanda
5950 chr15 41021022 41021022 1 + G A SKCM 41021019 + 41020999 41021039 41 ATCAGCCATGATGGTAGAATCTAGGTATGTGTTCAGTATAA ATCAGCCATGATGGTAGAATCTAAGTATGTGTTCAGTATAA < 41bp 0.738293954185872 0.501830336521685 0.23257792 0.14132485 prediction 0.472927235328374 Functional Loss - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41021019 chr15:41021022 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_71148 0 0 1 4 41021012 41021022 mRNA hsa-miR-152 RAD51 miRanda miRanda
5951 chr15 41021022 41021022 1 + G A SKCM 41021019 + 41020999 41021039 41 ATCAGCCATGATGGTAGAATCTAGGTATGTGTTCAGTATAA ATCAGCCATGATGGTAGAATCTAAGTATGTGTTCAGTATAA < 41bp 0.738293954185872 0.501830336521685 0.23257792 0.14132485 prediction 0.472927235328374 Functional Loss - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41021019 chr15:41021022 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_71148 0 0 1 4 41021012 41021022 mRNA hsa-miR-148b RAD51 miRanda miRanda
5952 chr15 41021022 41021022 1 + G A SKCM 41021019 + 41020999 41021039 41 ATCAGCCATGATGGTAGAATCTAGGTATGTGTTCAGTATAA ATCAGCCATGATGGTAGAATCTAAGTATGTGTTCAGTATAA < 41bp 0.738293954185872 0.501830336521685 0.23257792 0.14132485 prediction 0.472927235328374 Functional Loss - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41021019 chr15:41021022 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_71148 0 0 1 4 41021009 41021022 mRNA hsa-miR-454 RAD51 miRanda miRanda
5953 chr3 49753337 49753337 1 + C T GBM 49753335 + 49753315 49753355 41 TGTGCCACCTGCTTTGACCTCTCGGTCAGCCTGCTGCGTGT TGTGCCACCTGCTTTGACCTCTTGGTCAGCCTGCTGCGTGT < 41bp 0.736447319878349 0.45055329412157 0.24782014 0.12896094 prediction 0.472894639756697 Functional Loss - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49753335 chr3:49753337 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_71161 0 0 1 1 49753327 49753351 mRNA hsa-miR-214 RNF123 miRanda miRanda
5954 chr1 229438646 229438646 1 + G T LUAD 229438644 + 229438624 229438664 41 AAAGAATGGGCTCAGGTATTCAGTACGGAGATGCTGCCTTG AAAGAATGGGCTCAGGTATTCATTACGGAGATGCTGCCTTG < 41bp 0.892527186550938 0.6561958157151 0.23311603 0.13316488 prediction 0.472662741671677 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229438644 chr1:229438646 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_71211 0 0 1 2 229438637 229438661 mRNA hsa-miR-103 RAB4A miRanda miRanda
5955 chr1 229438646 229438646 1 + G T LUAD 229438644 + 229438624 229438664 41 AAAGAATGGGCTCAGGTATTCAGTACGGAGATGCTGCCTTG AAAGAATGGGCTCAGGTATTCATTACGGAGATGCTGCCTTG < 41bp 0.892527186550938 0.6561958157151 0.23311603 0.13316488 prediction 0.472662741671677 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229438644 chr1:229438646 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_71211 0 0 1 2 229438637 229438661 mRNA hsa-miR-107 RAB4A miRanda miRanda
5956 chr3 49212502 49212502 1 + G A CESC 49212499 + 49212479 49212519 41 CTCCCCTCTCCTGCAGGGTCCTGGACCAAATTGCCCCGCAG CTCCCCTCTCCTGCAGGGTCCTGAACCAAATTGCCCCGCAG < 41bp 0.747898191630433 0.511736206425458 0.8800224 0.3494156 prediction 0.47232397040995 Functional Loss - KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212499 chr3:49212502 stopgain 0.999 1 24 hm5C_associated_SNPs_71295 0 0 1 2 49212487 49212508 mRNA hsa-miR-133a KLHDC8B miRanda miRanda
5957 chr3 49212502 49212502 1 + G A CESC 49212499 + 49212479 49212519 41 CTCCCCTCTCCTGCAGGGTCCTGGACCAAATTGCCCCGCAG CTCCCCTCTCCTGCAGGGTCCTGAACCAAATTGCCCCGCAG < 41bp 0.747898191630433 0.511736206425458 0.8800224 0.3494156 prediction 0.47232397040995 Functional Loss - KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212499 chr3:49212502 stopgain 0.999 1 24 hm5C_associated_SNPs_71295 0 0 1 2 49212487 49212508 mRNA hsa-miR-133b KLHDC8B miRanda miRanda
5958 chr22 35812650 35812650 1 + T C LIHC 35812649 + 35812629 35812669 41 AGGCTGGGATCACCACCACCCTGAACTCCCGCTGCTCCGTC AGGCTGGGATCACCACCACCCCGAACTCCCGCTGCTCCGTC < 41bp 0.790344296075894 0.554205015011096 0.24370643 0.29278165 prediction 0.472278562129596 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35812649 chr22:35812650 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_71307 0 0 1 2 35812650 35812671 mRNA hsa-miR-184 MCM5 miRanda miRanda
5959 chr22 35812650 35812650 1 + T C LIHC 35812649 + 35812629 35812669 41 AGGCTGGGATCACCACCACCCTGAACTCCCGCTGCTCCGTC AGGCTGGGATCACCACCACCCCGAACTCCCGCTGCTCCGTC < 41bp 0.790344296075894 0.554205015011096 0.24370643 0.29278165 prediction 0.472278562129596 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35812649 chr22:35812650 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_71307 0 0 1 2 35812646 35812665 mRNA hsa-miR-503 MCM5 miRanda miRanda
5960 chr3 52811680 52811680 1 + G A UCEC 52811677 + 52811657 52811697 41 GGCTGCTGTTGTGCATGTACCTGGTATCTCTCCTCATCCTG GGCTGCTGTTGTGCATGTACCTGATATCTCTCCTCATCCTG < 41bp 0.736018119920783 0.482534307141 0.5031866 0.31779218 prediction 0.472036239841566 Functional Loss - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52811677 chr3:52811680 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_71372 0 0 0 1 52811670 52811690 mRNA hsa-miR-185 ITIH1 miRanda miRanda
5961 chr2 31489768 31489768 1 + C T rs150263934 31489766 + 31489746 31489786 41 TTTGGGCACACCTCCAAGTTCTCGGGATTAGAAGGACAAGA TTTGGGCACACCTCCAAGTTCTTGGGATTAGAAGGACAAGA < 41bp 0.735970104155786 0.494467215731001 0.0808765 0.14064309 prediction 0.471940208311571 Functional Loss - EHD3 ENSG00000013016 UTR3 Human protein_coding chr2:31489766 chr2:31489768 . . 0 23 hm5C_associated_SNPs_71400 0 0 1 2 31489748 31489769 mRNA hsa-miR-146a EHD3 miRanda miRanda
5962 chr2 31489768 31489768 1 + C T rs150263934 31489766 + 31489746 31489786 41 TTTGGGCACACCTCCAAGTTCTCGGGATTAGAAGGACAAGA TTTGGGCACACCTCCAAGTTCTTGGGATTAGAAGGACAAGA < 41bp 0.735970104155786 0.494467215731001 0.0808765 0.14064309 prediction 0.471940208311571 Functional Loss - EHD3 ENSG00000013016 UTR3 Human protein_coding chr2:31489766 chr2:31489768 . . 0 23 hm5C_associated_SNPs_71400 0 0 1 2 31489748 31489769 mRNA hsa-miR-146b-5p EHD3 miRanda miRanda
5963 chr5 175557364 175557364 1 + G C rs183992961 175557360 + 175557340 175557380 41 AATCCCAGCACTTTGGGAGTCCAAGGTGGGTGGATCACCTG AATCCCAGCACTTTGGGAGTCCAACGTGGGTGGATCACCTG < 41bp 0.735937980021718 0.438903342782219 0.8837364 0.44478476 prediction 0.471875960043435 Functional Loss - LOC100507387;LOC643201 ENSG00000251458 ncRNA_intronic Human lincRNA chr5:175557360 chr5:175557364 . . 0 25 hm5C_associated_SNPs_71423 0 0 0 1 175557360 175557381 mRNA hsa-miR-125a-3p FAM153B miRanda miRanda
5964 chr10 99216547 99216547 1 + C T COAD 99216545 + 99216525 99216565 41 CTCTTCTAGGCACTGGCTTACTCGGGTGCTCTTACCTTCTA CTCTTCTAGGCACTGGCTTACTTGGGTGCTCTTACCTTCTA < 41bp 0.814105010578539 0.578241509951845 0.18382293 0.20370269 prediction 0.471727001253388 Functional Loss - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99216545 chr10:99216547 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_71455 0 0 1 1 99216537 99216558 mRNA hsa-miR-506 ZDHHC16 miRanda miRanda
5965 chr22 39388567 39388567 1 + A C rs186931724 39388566 + 39388546 39388586 41 CATCTCCAGCTGCTCACAGACACCAGCAAAGCAATGTGCTC CATCTCCAGCTGCTCACAGACCCCAGCAAAGCAATGTGCTC < 41bp 0.789266381043436 0.553537003669626 0.024623305 0.026881725 prediction 0.471458754747621 Functional Loss - APOBEC3B-AS1 ENSG00000249310 ncRNA_exonic Human antisense chr22:39388566 chr22:39388567 . . 0 22 hm5C_associated_SNPs_71536 0 0 1 2 39388551 39388573 mRNA hsa-miR-138 APOBEC3B miRanda miRanda
5966 chr22 39388567 39388567 1 + A C rs186931724 39388566 + 39388546 39388586 41 CATCTCCAGCTGCTCACAGACACCAGCAAAGCAATGTGCTC CATCTCCAGCTGCTCACAGACCCCAGCAAAGCAATGTGCTC < 41bp 0.789266381043436 0.553537003669626 0.024623305 0.026881725 prediction 0.471458754747621 Functional Loss - APOBEC3B-AS1 ENSG00000249310 ncRNA_exonic Human antisense chr22:39388566 chr22:39388567 . . 0 22 hm5C_associated_SNPs_71536 0 0 1 2 39388551 39388573 mRNA hsa-miR-138 APOBEC3A miRanda miRanda
5967 chr1 154437778 154437778 1 + G T LUAD 154437775 + 154437755 154437795 41 AGCCTGGGGTCTGACAATACCTCGAGCCACAACCGACCAGA AGCCTGGGGTCTGACAATACCTCTAGCCACAACCGACCAGA < 41bp 0.918864927059947 0.68319631906624 0.75792384 0.88410616 prediction 0.471337215987414 Functional Loss - IL6R ENSG00000160712 CDS Human protein_coding chr1:154437775 chr1:154437778 synonymous SNV . 0 24 hm5C_associated_SNPs_71572 0 0 1 1 154437759 154437778 mRNA hsa-miR-202 IL6R miRanda miRanda
5968 chr5 108133938 108133938 1 + G T LUAD 108133935 + 108133915 108133955 41 ATGAAGCAGTGTTAAAATTGCAAGACTGGGAATTACGGTTA ATGAAGCAGTGTTAAAATTGCAATACTGGGAATTACGGTTA < 41bp 0.73566707204692 0.382403877858103 0.3295653 0.36511475 prediction 0.47133414409384 Functional Loss - FER ENSG00000151422 CDS Human protein_coding chr5:108133935 chr5:108133938 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_71574 0 0 1 1 108133921 108133941 mRNA hsa-miR-431 FER miRanda miRanda
5969 chr17 18003938 18003938 1 + C T LUSC 18003936 + 18003916 18003956 41 ACAGTCACGCTGACCCAGTGCTCGGAAAAGCTGGTGCAGCT ACAGTCACGCTGACCCAGTGCTTGGAAAAGCTGGTGCAGCT < 41bp 0.735639192369408 0.443688687928519 0.4341045 0.10186395 prediction 0.471278384738815 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18003936 chr17:18003938 nonsynonymous SNV 0.948 2 23 hm5C_associated_SNPs_71590 0 0 1 1 18003919 18003941 mRNA hsa-miR-615-3p DRG2 miRanda miRanda
5970 chr5 179264366 179264366 1 + C T rs559679314 179264364 + 179264344 179264384 41 GTCCCTCCTAACAAGTGTATCTCGATTAATAACCTGCCAGT GTCCCTCCTAACAAGTGTATCTTGATTAATAACCTGCCAGT < 41bp 0.760116320859042 0.524512264398332 0.62111664 0.24825546 prediction 0.471208112921422 Functional Loss - MRNIP;SQSTM1 ENSG00000161010;ENSG00000161011 UTR3 Human other chr5:179264364 chr5:179264366 . . 0 23 hm5C_associated_SNPs_71608 0 0 1 1 179264354 179264379 mRNA hsa-miR-154 SQSTM1 miRanda miRanda
5971 chr11 10515090 10515090 1 + G A UCEC 10515087 + 10515067 10515107 41 GTGGACTCACTGGATGTCCACGCGGTGAGTGAGCTTCTGCT GTGGACTCACTGGATGTCCACGCAGTGAGTGAGCTTCTGCT < 41bp 0.76992301010687 0.534356867045093 0.390061 0.12245393 prediction 0.471132286123556 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10515087 chr11:10515090 synonymous SNV . 0 24 hm5C_associated_SNPs_71635 0 0 0 3 10515086 10515090 mRNA hsa-miR-1 AMPD3 miRanda miRanda
5972 chr11 10515090 10515090 1 + G A UCEC 10515087 + 10515067 10515107 41 GTGGACTCACTGGATGTCCACGCGGTGAGTGAGCTTCTGCT GTGGACTCACTGGATGTCCACGCAGTGAGTGAGCTTCTGCT < 41bp 0.76992301010687 0.534356867045093 0.390061 0.12245393 prediction 0.471132286123556 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10515087 chr11:10515090 synonymous SNV . 0 24 hm5C_associated_SNPs_71635 0 0 0 3 10515086 10515090 mRNA hsa-miR-206 AMPD3 miRanda miRanda
5973 chr11 10515090 10515090 1 + G A UCEC 10515087 + 10515067 10515107 41 GTGGACTCACTGGATGTCCACGCGGTGAGTGAGCTTCTGCT GTGGACTCACTGGATGTCCACGCAGTGAGTGAGCTTCTGCT < 41bp 0.76992301010687 0.534356867045093 0.390061 0.12245393 prediction 0.471132286123556 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10515087 chr11:10515090 synonymous SNV . 0 24 hm5C_associated_SNPs_71635 0 0 0 3 10515088 10515090 mRNA hsa-miR-613 AMPD3 miRanda miRanda
5974 chr12 111319032 111319032 1 + T C UCEC 111319031 + 111319011 111319051 41 TCTATGCCCATGAGAGCAAGCTCAAGTCCTTCCTGCTCGTC TCTATGCCCATGAGAGCAAGCCCAAGTCCTTCCTGCTCGTC < 41bp 0.810024479192146 0.574557033083773 0.7236476 0.7730318 prediction 0.470934892216745 Functional Loss - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111319031 chr12:111319032 nonsynonymous SNV 0.794 3 22 hm5C_associated_SNPs_71689 0 0 0 1 111319024 111319044 mRNA hsa-miR-7 CCDC63 miRanda miRanda
5975 chr19 49518862 49518862 1 + G A UCEC 49518859 + 49518839 49518879 41 TGCAGGTGGATGACATCAAGCGGGTCTACTCACTCTTCCTG TGCAGGTGGATGACATCAAGCGGATCTACTCACTCTTCCTG < 41bp 0.735292011512253 0.492080173917025 0.8656579 0.6240494 prediction 0.470584023024507 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49518859 chr19:49518862 nonsynonymous SNV 0.988 1 24 hm5C_associated_SNPs_71798 0 0 1 1 49518848 49518869 mRNA hsa-miR-411 RUVBL2 miRanda miRanda
5976 chr20 42213496 42213496 1 + G T LUAD 42213493 + 42213473 42213513 41 CATTGGCTTTTATTGACAGACAGGACCTGCTGACTTGAAGC CATTGGCTTTTATTGACAGACAGTACCTGCTGACTTGAAGC < 41bp 0.735280953844294 0.351675626320904 0.070565075 0.018327504 prediction 0.470561907688587 Functional Loss - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42213493 chr20:42213496 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_71802 0 0 0 2 42213492 42213505 mRNA hsa-miR-214 SGK2 miRanda miRanda
5977 chr20 42213496 42213496 1 + G T LUAD 42213493 + 42213473 42213513 41 CATTGGCTTTTATTGACAGACAGGACCTGCTGACTTGAAGC CATTGGCTTTTATTGACAGACAGTACCTGCTGACTTGAAGC < 41bp 0.735280953844294 0.351675626320904 0.070565075 0.018327504 prediction 0.470561907688587 Functional Loss - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42213493 chr20:42213496 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_71802 0 0 0 2 42213492 42213508 mRNA hsa-miR-424 SGK2 miRanda miRanda
5978 chr2 220136778 220136778 1 + A T LGG 220136774 + 220136754 220136794 41 AGGGTGAGTTCTCCAAGGCCCATGAGGATATGACTGCCCTG AGGGTGAGTTCTCCAAGGCCCATGTGGATATGACTGCCCTG < 41bp 0.800197707430037 0.56512088141304 0.23302671 0.13139066 prediction 0.470153652033994 Functional Loss - TUBA4B ENSG00000243910 ncRNA_exonic Human protein_coding chr2:220136774 chr2:220136778 . . 0 25 hm5C_associated_SNPs_71920 0 0 0 1 220136759 220136780 mRNA hsa-miR-330-5p TUBA4B miRanda miRanda
5979 chr6 54173458 54173458 1 + G A LUSC 54173455 + 54173435 54173475 41 GGACCTAGAGGCTTATTTCACTAGGAATCACACCGTTTTGC GGACCTAGAGGCTTATTTCACTAAGAATCACACCGTTTTGC < 41bp 0.767563839568143 0.532540085700896 0.82187223 0.1960412 prediction 0.470047507734494 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54173455 chr6:54173458 nonsynonymous SNV 0.294 0 24 hm5C_associated_SNPs_71951 0 0 0 1 54173441 54173462 mRNA hsa-miR-384 TINAG miRanda miRanda
5980 chr1 247712508 247712508 1 + C T SKCM 247712506 + 247712486 247712526 41 GTGAAAAGATGGGAAATTATCTCCTGCGAAAACTCAGGTGA GTGAAAAGATGGGAAATTATCTTCTGCGAAAACTCAGGTGA < 41bp 0.73501189788826 0.470605057380147 0.24404854 0.19994813 prediction 0.470023795776521 Functional Loss - GCSAML ENSG00000169224 CDS Human protein_coding chr1:247712506 chr1:247712508 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_71959 0 0 0 1 247712487 247712509 mRNA hsa-miR-539 C1orf150 miRanda miRanda
5981 chr12 2930444 2930444 1 + C T UCEC 2930442 + 2930422 2930462 41 GCACAGGGAGACCCCAGCTGCCCGAGACGTGGTGCTGCACC GCACAGGGAGACCCCAGCTGCCTGAGACGTGGTGCTGCACC < 41bp 0.734973959017056 0.450654511418865 0.09262091 0.13896796 prediction 0.469947918034111 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930442 chr12:2930444 stopgain 0.985 1 23 hm5C_associated_SNPs_71986 0 0 1 3 2930437 2930458 mRNA hsa-miR-29a ITFG2 miRanda miRanda
5982 chr12 2930444 2930444 1 + C T UCEC 2930442 + 2930422 2930462 41 GCACAGGGAGACCCCAGCTGCCCGAGACGTGGTGCTGCACC GCACAGGGAGACCCCAGCTGCCTGAGACGTGGTGCTGCACC < 41bp 0.734973959017056 0.450654511418865 0.09262091 0.13896796 prediction 0.469947918034111 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930442 chr12:2930444 stopgain 0.985 1 23 hm5C_associated_SNPs_71986 0 0 1 3 2930436 2930458 mRNA hsa-miR-29b ITFG2 miRanda miRanda
5983 chr12 2930444 2930444 1 + C T UCEC 2930442 + 2930422 2930462 41 GCACAGGGAGACCCCAGCTGCCCGAGACGTGGTGCTGCACC GCACAGGGAGACCCCAGCTGCCTGAGACGTGGTGCTGCACC < 41bp 0.734973959017056 0.450654511418865 0.09262091 0.13896796 prediction 0.469947918034111 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930442 chr12:2930444 stopgain 0.985 1 23 hm5C_associated_SNPs_71986 0 0 1 3 2930437 2930458 mRNA hsa-miR-29c ITFG2 miRanda miRanda
5984 chr17 19445795 19445795 1 + G A LUSC 19445792 + 19445772 19445812 41 AAGCTGGAGCTGGATGCAGTCACGCTGGCAATCGCGGTACG AAGCTGGAGCTGGATGCAGTCACACTGGCAATCGCGGTACG < 41bp 0.734970648045107 0.495872673919606 0.41152903 0.4068179 prediction 0.469941296090213 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19445792 chr17:19445795 synonymous SNV . 0 24 hm5C_associated_SNPs_71991 0 0 1 1 19445776 19445795 mRNA hsa-miR-134 SLC47A1 miRanda miRanda
5985 chr11 63721885 63721885 1 + G A rs374740879 63721882 + 63721862 63721902 41 TGCTCCTATGAGATCCTGAGCCGGAGGACCAAGTTTGGGGA TGCTCCTATGAGATCCTGAGCCGAAGGACCAAGTTTGGGGA < 41bp 0.734937750952998 0.498687740053417 0.87320316 0.31297967 prediction 0.469875501905997 Functional Loss - NAA40 ENSG00000110583 CDS Human protein_coding chr11:63721882 chr11:63721885 synonymous SNV . 0 24 hm5C_associated_SNPs_72004 0 0 1 2 63721870 63721894 mRNA hsa-miR-133a NAA40 miRanda miRanda
5986 chr11 63721885 63721885 1 + G A rs374740879 63721882 + 63721862 63721902 41 TGCTCCTATGAGATCCTGAGCCGGAGGACCAAGTTTGGGGA TGCTCCTATGAGATCCTGAGCCGAAGGACCAAGTTTGGGGA < 41bp 0.734937750952998 0.498687740053417 0.87320316 0.31297967 prediction 0.469875501905997 Functional Loss - NAA40 ENSG00000110583 CDS Human protein_coding chr11:63721882 chr11:63721885 synonymous SNV . 0 24 hm5C_associated_SNPs_72004 0 0 1 2 63721870 63721894 mRNA hsa-miR-133b NAA40 miRanda miRanda
5987 chr10 70513716 70513716 1 + G T UCEC 70513713 + 70513693 70513733 41 GGTGGATGCTTTCCCTTTGTCAAGACCATTTCAGCTGGGAA GGTGGATGCTTTCCCTTTGTCAATACCATTTCAGCTGGGAA < 41bp 0.734883708609009 0.355846859287819 0.3495891 0.06912464 prediction 0.469767417218017 Functional Loss - CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70513713 chr10:70513716 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_72036 0 0 1 1 70513705 70513726 mRNA hsa-miR-203 CCAR1 miRanda miRanda
5988 chr2 106509614 106509614 1 + C T UCEC 106509612 + 106509592 106509632 41 AGCACGGGGAGAAGCTCTACCTCGTCAGGGCCCTGCAGTGA AGCACGGGGAGAAGCTCTACCTTGTCAGGGCCCTGCAGTGA < 41bp 0.795630106473075 0.560870810055602 0.007636845 0.008364022 prediction 0.469518592834945 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509612 chr2:106509614 synonymous SNV . 0 23 hm5C_associated_SNPs_72106 0 0 0 9 106509595 106509615 mRNA hsa-let-7a NCK2 miRanda miRanda
5989 chr2 106509614 106509614 1 + C T UCEC 106509612 + 106509592 106509632 41 AGCACGGGGAGAAGCTCTACCTCGTCAGGGCCCTGCAGTGA AGCACGGGGAGAAGCTCTACCTTGTCAGGGCCCTGCAGTGA < 41bp 0.795630106473075 0.560870810055602 0.007636845 0.008364022 prediction 0.469518592834945 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509612 chr2:106509614 synonymous SNV . 0 23 hm5C_associated_SNPs_72106 0 0 0 9 106509595 106509615 mRNA hsa-let-7b NCK2 miRanda miRanda
5990 chr2 106509614 106509614 1 + C T UCEC 106509612 + 106509592 106509632 41 AGCACGGGGAGAAGCTCTACCTCGTCAGGGCCCTGCAGTGA AGCACGGGGAGAAGCTCTACCTTGTCAGGGCCCTGCAGTGA < 41bp 0.795630106473075 0.560870810055602 0.007636845 0.008364022 prediction 0.469518592834945 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509612 chr2:106509614 synonymous SNV . 0 23 hm5C_associated_SNPs_72106 0 0 0 9 106509595 106509615 mRNA hsa-let-7c NCK2 miRanda miRanda
5991 chr2 106509614 106509614 1 + C T UCEC 106509612 + 106509592 106509632 41 AGCACGGGGAGAAGCTCTACCTCGTCAGGGCCCTGCAGTGA AGCACGGGGAGAAGCTCTACCTTGTCAGGGCCCTGCAGTGA < 41bp 0.795630106473075 0.560870810055602 0.007636845 0.008364022 prediction 0.469518592834945 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509612 chr2:106509614 synonymous SNV . 0 23 hm5C_associated_SNPs_72106 0 0 0 9 106509595 106509615 mRNA hsa-let-7d NCK2 miRanda miRanda
5992 chr2 106509614 106509614 1 + C T UCEC 106509612 + 106509592 106509632 41 AGCACGGGGAGAAGCTCTACCTCGTCAGGGCCCTGCAGTGA AGCACGGGGAGAAGCTCTACCTTGTCAGGGCCCTGCAGTGA < 41bp 0.795630106473075 0.560870810055602 0.007636845 0.008364022 prediction 0.469518592834945 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509612 chr2:106509614 synonymous SNV . 0 23 hm5C_associated_SNPs_72106 0 0 0 9 106509595 106509615 mRNA hsa-let-7e NCK2 miRanda miRanda
5993 chr2 106509614 106509614 1 + C T UCEC 106509612 + 106509592 106509632 41 AGCACGGGGAGAAGCTCTACCTCGTCAGGGCCCTGCAGTGA AGCACGGGGAGAAGCTCTACCTTGTCAGGGCCCTGCAGTGA < 41bp 0.795630106473075 0.560870810055602 0.007636845 0.008364022 prediction 0.469518592834945 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509612 chr2:106509614 synonymous SNV . 0 23 hm5C_associated_SNPs_72106 0 0 0 9 106509595 106509615 mRNA hsa-let-7f NCK2 miRanda miRanda
5994 chr2 106509614 106509614 1 + C T UCEC 106509612 + 106509592 106509632 41 AGCACGGGGAGAAGCTCTACCTCGTCAGGGCCCTGCAGTGA AGCACGGGGAGAAGCTCTACCTTGTCAGGGCCCTGCAGTGA < 41bp 0.795630106473075 0.560870810055602 0.007636845 0.008364022 prediction 0.469518592834945 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509612 chr2:106509614 synonymous SNV . 0 23 hm5C_associated_SNPs_72106 0 0 0 9 106509596 106509615 mRNA hsa-miR-98 NCK2 miRanda miRanda
5995 chr2 106509614 106509614 1 + C T UCEC 106509612 + 106509592 106509632 41 AGCACGGGGAGAAGCTCTACCTCGTCAGGGCCCTGCAGTGA AGCACGGGGAGAAGCTCTACCTTGTCAGGGCCCTGCAGTGA < 41bp 0.795630106473075 0.560870810055602 0.007636845 0.008364022 prediction 0.469518592834945 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509612 chr2:106509614 synonymous SNV . 0 23 hm5C_associated_SNPs_72106 0 0 0 9 106509595 106509615 mRNA hsa-let-7g NCK2 miRanda miRanda
5996 chr2 106509614 106509614 1 + C T UCEC 106509612 + 106509592 106509632 41 AGCACGGGGAGAAGCTCTACCTCGTCAGGGCCCTGCAGTGA AGCACGGGGAGAAGCTCTACCTTGTCAGGGCCCTGCAGTGA < 41bp 0.795630106473075 0.560870810055602 0.007636845 0.008364022 prediction 0.469518592834945 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509612 chr2:106509614 synonymous SNV . 0 23 hm5C_associated_SNPs_72106 0 0 0 9 106509595 106509615 mRNA hsa-let-7i NCK2 miRanda miRanda
5997 chr19 14444557 14444557 1 + G C rs570463461 14444556 + 14444536 14444576 41 CCTCCTCCGGAGCCGCACGCCGGGCTCGGCTCACCCTCCCC CCTCCTCCGGAGCCGCACGCCCGGCTCGGCTCACCCTCCCC < 41bp 0.851450860504508 0.616705554845271 0.92197716 0.3183065 prediction 0.469490611318474 Functional Loss - LINC01842 ENSG00000267147 ncRNA_exonic Human lincRNA chr19:14444556 chr19:14444557 . . 0 22 hm5C_associated_SNPs_72119 0 0 0 2 14444555 14444562 lncRNA hsa-miR-3940-3p LINC01842 miRanda starBase2
5998 chr19 14444557 14444557 1 + G C rs570463461 14444556 + 14444536 14444576 41 CCTCCTCCGGAGCCGCACGCCGGGCTCGGCTCACCCTCCCC CCTCCTCCGGAGCCGCACGCCCGGCTCGGCTCACCCTCCCC < 41bp 0.851450860504508 0.616705554845271 0.92197716 0.3183065 prediction 0.469490611318474 Functional Loss - LINC01842 ENSG00000267147 ncRNA_exonic Human lincRNA chr19:14444556 chr19:14444557 . . 0 22 hm5C_associated_SNPs_72119 0 0 0 2 14444555 14444565 lncRNA hsa-miR-615-3p LINC01842 miRanda starBase2
5999 chr19 12024455 12024455 1 + C T rs169404 12024453 + 12024433 12024473 41 AGACCTCATGATTCGCCTGCCTCGGCCTCCCAAAATGCTGG AGACCTCATGATTCGCCTGCCTTGGCCTCCCAAAATGCTGG < 41bp 0.734738958069231 0.498002195176711 0.113784224 0.11469647 prediction 0.469477916138461 Functional Loss - ZNF69 ENSG00000198429 UTR3 Human protein_coding chr19:12024453 chr19:12024455 . . 0 23 hm5C_associated_SNPs_72123 0 0 1 1 12024453 12024474 mRNA hsa-miR-338-3p ZNF69 miRanda miRanda
6000 chr15 72699064 72699064 1 + G T LUSC 72699062 + 72699042 72699082 41 GCATGACCACCAACTTGGATCTGAAGGTATCCATGCTCAGC GCATGACCACCAACTTGGATCTTAAGGTATCCATGCTCAGC < 41bp 0.734658908138856 0.397111807945277 0.19529876 0.21135029 prediction 0.469317816277713 Functional Loss - TMEM202 ENSG00000187806 CDS Human protein_coding chr15:72699062 chr15:72699064 synonymous SNV . 0 23 hm5C_associated_SNPs_72154 0 0 0 1 72699050 72699072 mRNA hsa-miR-875-5p TMEM202 miRanda miRanda
6001 chr9 136265601 136265601 1 + G T UCEC 136265599 + 136265579 136265619 41 ACGACCATGGAGCTACATGACAGGGTCCTCGATGTCCAGCT ACGACCATGGAGCTACATGACATGGTCCTCGATGTCCAGCT < 41bp 0.911515761306365 0.676918820403281 0.8273734 0.04191503 prediction 0.469193881806167 Functional Loss - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136265599 chr9:136265601 nonsynonymous SNV 0.007 1 23 hm5C_associated_SNPs_72185 0 0 0 2 136265585 136265604 mRNA hsa-miR-339-5p C9orf96 miRanda miRanda
6002 chr9 136265601 136265601 1 + G T UCEC 136265599 + 136265579 136265619 41 ACGACCATGGAGCTACATGACAGGGTCCTCGATGTCCAGCT ACGACCATGGAGCTACATGACATGGTCCTCGATGTCCAGCT < 41bp 0.911515761306365 0.676918820403281 0.8273734 0.04191503 prediction 0.469193881806167 Functional Loss - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136265599 chr9:136265601 nonsynonymous SNV 0.007 1 23 hm5C_associated_SNPs_72185 0 0 0 2 136265584 136265606 mRNA hsa-miR-504 C9orf96 miRanda miRanda
6003 chr1 215259819 215259819 1 + C T BLCA 215259817 + 215259797 215259837 41 GCTTCCCGGGTGGAGAGTGACACGACCATTAATGTTATGAA GCTTCCCGGGTGGAGAGTGACATGACCATTAATGTTATGAA < 41bp 0.84915753718482 0.61464578616469 0.08779508 0.043730497 prediction 0.469023502040261 Functional Loss - KCNK2 ENSG00000082482 CDS Human protein_coding chr1:215259817 chr1:215259819 nonsynonymous SNV 0.988 1 23 hm5C_associated_SNPs_72233 0 0 0 1 215259812 215259833 mRNA hsa-miR-543 KCNK2 miRanda miRanda
6004 chr1 222920036 222920036 1 + A C STAD 222920035 + 222920015 222920055 41 AGGAAGAGGAAAAGGAGGAGCAGAGCACAAATTCAACACTT AGGAAGAGGAAAAGGAGGAGCCGAGCACAAATTCAACACTT < 41bp 0.73447209323736 0.481788866148079 0.08723143 0.055054843 prediction 0.468944186474721 Functional Loss - FAM177B ENSG00000197520 CDS Human protein_coding chr1:222920035 chr1:222920036 nonsynonymous SNV 0.025 0 22 hm5C_associated_SNPs_72252 0 0 0 2 222920025 222920045 mRNA hsa-miR-599 FAM177B miRanda miRanda
6005 chr1 222920036 222920036 1 + A C STAD 222920035 + 222920015 222920055 41 AGGAAGAGGAAAAGGAGGAGCAGAGCACAAATTCAACACTT AGGAAGAGGAAAAGGAGGAGCCGAGCACAAATTCAACACTT < 41bp 0.73447209323736 0.481788866148079 0.08723143 0.055054843 prediction 0.468944186474721 Functional Loss - FAM177B ENSG00000197520 CDS Human protein_coding chr1:222920035 chr1:222920036 nonsynonymous SNV 0.025 0 22 hm5C_associated_SNPs_72252 0 0 0 2 222920032 222920053 mRNA hsa-miR-653 FAM177B miRanda miRanda
6006 chr13 48937009 48937009 1 + G T LUSC 48937006 + 48936986 48937026 41 ACACCCAGGCGAGGTCAGAACAGGAGTGCACGGATAGCAAA ACACCCAGGCGAGGTCAGAACAGTAGTGCACGGATAGCAAA < 41bp 0.913566967306819 0.679116430272052 0.73837703 0.24470422 prediction 0.468901074069535 Functional Loss - RB1 ENSG00000139687 CDS Human protein_coding chr13:48937006 chr13:48937009 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_72260 0 0 1 2 48937009 48937029 mRNA hsa-miR-129-5p RB1 miRanda miRanda
6007 chr13 48937009 48937009 1 + G T LUSC 48937006 + 48936986 48937026 41 ACACCCAGGCGAGGTCAGAACAGGAGTGCACGGATAGCAAA ACACCCAGGCGAGGTCAGAACAGTAGTGCACGGATAGCAAA < 41bp 0.913566967306819 0.679116430272052 0.73837703 0.24470422 prediction 0.468901074069535 Functional Loss - RB1 ENSG00000139687 CDS Human protein_coding chr13:48937006 chr13:48937009 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_72260 0 0 1 2 48936998 48937019 mRNA hsa-miR-148a RB1 miRanda miRanda
6008 chr22 50956610 50956610 1 + G A rs201367371 50956607 + 50956587 50956627 41 CGGAAGGATTTCAGGATGAACACGTGCGTTCCCCACCCCAG CGGAAGGATTTCAGGATGAACACATGCGTTCCCCACCCCAG < 41bp 0.734388096138202 0.485956418082772 0.4476383 0.17871091 prediction 0.468776192276404 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50956607 chr22:50956610 synonymous SNV . 0 24 hm5C_associated_SNPs_72295 0 0 1 1 50956602 50956623 mRNA hsa-miR-491-5p NCAPH2 miRanda miRanda
6009 chr7 135263592 135263592 1 + G A SKCM 135263589 + 135263569 135263609 41 CTCACAGCTTTGGAAACTGCCTGGGCTCCAAGCCACTGTTA CTCACAGCTTTGGAAACTGCCTGAGCTCCAAGCCACTGTTA < 41bp 0.734310499613108 0.499934811688347 0.29101443 0.09769896 prediction 0.468620999226217 Functional Loss - NUP205 ENSG00000155561 CDS Human protein_coding chr7:135263589 chr7:135263592 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_72339 0 0 1 1 135263591 135263613 mRNA hsa-miR-505 NUP205 miRanda miRanda
6010 chr16 12061677 12061677 1 + G C rs34546237 12061673 + 12061653 12061693 41 GCCAGCTGCTTTGAGTGCTACGGAGATAGAGAAATCAATTT GCCAGCTGCTTTGAGTGCTACGGACATAGAGAAATCAATTT < 41bp 0.837553824715021 0.60327477638762 0.15908799 0.030593038 prediction 0.468558096654802 Functional Loss - TNFRSF17 ENSG00000048462 CDS Human protein_coding chr16:12061673 chr16:12061677 nonsynonymous SNV 0.046 0 25 hm5C_associated_SNPs_72363 0 0 0 1 12061669 12061690 mRNA hsa-miR-876-5p TNFRSF17 miRanda miRanda
6011 chr9 7165251 7165251 1 + T C LIHC 7165250 + 7165230 7165270 41 TTCTGCAGAGCCGAGACTGTCTGAAGCTGGGCCCACCTGCT TTCTGCAGAGCCGAGACTGTCCGAAGCTGGGCCCACCTGCT < 41bp 0.749294249685366 0.51504849953975 0.87605584 0.7497749 prediction 0.468491500291232 Functional Loss - KDM4C ENSG00000107077 CDS Human protein_coding chr9:7165250 chr9:7165251 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_72386 0 0 1 1 7165245 7165272 mRNA hsa-miR-214 KDM4C miRanda miRanda
6012 chr1 162769628 162769628 1 + C T COAD 162769626 + 162769606 162769646 41 CAAGGAAATCTAATTTCAGCCTCGAGGACTTCCAGCACAGC CAAGGAAATCTAATTTCAGCCTTGAGGACTTCCAGCACAGC < 41bp 0.841574955052504 0.607351548249869 0.08856043 0.021749973 prediction 0.46844681360527 Functional Loss - HSD17B7 ENSG00000132196 CDS Human protein_coding chr1:162769626 chr1:162769628 synonymous SNV . 0 23 hm5C_associated_SNPs_72402 0 0 0 1 162769607 162769629 mRNA hsa-miR-485-5p HSD17B7 miRanda miRanda
6013 chr11 70007371 70007371 1 + G A COAD 70007368 + 70007348 70007388 41 CCCTCCGTGCGGTCCAACATCCGGGTCACAGTCACAGCCAC CCCTCCGTGCGGTCCAACATCCGAGTCACAGTCACAGCCAC < 41bp 0.782360949537593 0.548166314526655 0.8889005 0.42262566 prediction 0.468389270021875 Functional Loss - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70007368 chr11:70007371 synonymous SNV . 0 24 hm5C_associated_SNPs_72416 0 0 0 1 70007364 70007383 mRNA hsa-miR-134 ANO1 miRanda miRanda
6014 chr8 134239723 134239723 1 + A C SKCM 134239722 + 134239702 134239742 41 TTCACACTTGCGGGCTGCATCAGCACACGCTCCTATCAACC TTCACACTTGCGGGCTGCATCCGCACACGCTCCTATCAACC < 41bp 0.781292695050838 0.547275193226942 0.5822301 0.16846743 prediction 0.468035003647793 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134239722 chr8:134239723 nonsynonymous SNV 0.813 4 22 hm5C_associated_SNPs_72498 0 0 0 1 134239712 134239731 mRNA hsa-miR-187 WISP1 miRanda miRanda
6015 chr7 128358960 128358960 1 + T C GBM 128358959 + 128358939 128358979 41 CCTGCAGTTGAGGACAGTCACTGAGAAGATTTATTACCTAA CCTGCAGTTGAGGACAGTCACCGAGAAGATTTATTACCTAA < 41bp 0.735400709700296 0.501443959462044 0.1538476 0.1444385 prediction 0.467913500476503 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128358959 chr7:128358960 synonymous SNV . 0 22 hm5C_associated_SNPs_72537 0 0 0 2 128358937 128358960 mRNA hsa-miR-134 FAM71F1 miRanda miRanda
6016 chr7 128358960 128358960 1 + T C GBM 128358959 + 128358939 128358979 41 CCTGCAGTTGAGGACAGTCACTGAGAAGATTTATTACCTAA CCTGCAGTTGAGGACAGTCACCGAGAAGATTTATTACCTAA < 41bp 0.735400709700296 0.501443959462044 0.1538476 0.1444385 prediction 0.467913500476503 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128358959 chr7:128358960 synonymous SNV . 0 22 hm5C_associated_SNPs_72537 0 0 0 2 128358946 128358960 mRNA hsa-miR-134 FAM71F1 miRanda miRanda
6017 chr14 51371081 51371081 1 + A C rs17123116 51371080 + 51371060 51371100 41 TTTCCTGAGCAAGCAGTGGTCATGAGTCTGGGAGGAGTGGA TTTCCTGAGCAAGCAGTGGTCCTGAGTCTGGGAGGAGTGGA < 41bp 0.785098912726093 0.551186715780369 0.85180163 0.44552934 prediction 0.467824393891448 Functional Loss - ABHD12B ENSG00000131969 CDS Human protein_coding chr14:51371080 chr14:51371081 synonymous SNV . 0 22 hm5C_associated_SNPs_72561 0 0 0 1 51371073 51371094 mRNA hsa-miR-150 ABHD12B miRanda miRanda
6018 chr7 114304449 114304449 1 + G T LUSC 114304447 + 114304427 114304467 41 GGTTCTCTGGATCACATTGACAGCAATGGAAACAGTAGTCC GGTTCTCTGGATCACATTGACATCAATGGAAACAGTAGTCC < 41bp 0.733896639983732 0.441952417852708 0.72144186 0.21636766 prediction 0.467793279967465 Functional Loss - FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114304447 chr7:114304449 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_72574 0 0 0 1 114304432 114304453 mRNA hsa-miR-599 FOXP2 miRanda miRanda
6019 chr10 115664637 115664637 1 + A C UCEC 115664633 + 115664613 115664653 41 GCCCGTTCCTAGTAGAAAAACAGAAGACATTACCCAAACTA GCCCGTTCCTAGTAGAAAAACAGACGACATTACCCAAACTA < 41bp 0.733869970828475 0.333933055575746 0.48932824 0.31199798 prediction 0.467739941656949 Functional Loss - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115664633 chr10:115664637 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_72588 0 0 1 2 115664635 115664657 mRNA hsa-miR-196a NHLRC2 miRanda miRanda
6020 chr10 115664637 115664637 1 + A C UCEC 115664633 + 115664613 115664653 41 GCCCGTTCCTAGTAGAAAAACAGAAGACATTACCCAAACTA GCCCGTTCCTAGTAGAAAAACAGACGACATTACCCAAACTA < 41bp 0.733869970828475 0.333933055575746 0.48932824 0.31199798 prediction 0.467739941656949 Functional Loss - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115664633 chr10:115664637 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_72588 0 0 1 2 115664635 115664657 mRNA hsa-miR-196b NHLRC2 miRanda miRanda
6021 chr10 33134530 33134530 1 + A C KIRC 33134529 + 33134509 33134549 41 GGTCTAATGAAGGAGTCAACCACGACACAATTAAAAAGTCA GGTCTAATGAAGGAGTCAACCCCGACACAATTAAAAAGTCA < 41bp 0.749292644912431 0.515526921182624 0.22205779 0.14107126 prediction 0.467531447459615 Functional Loss - CCDC7 ENSG00000150076 CDS Human other chr10:33134529 chr10:33134530 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_72649 0 0 0 1 33134518 33134539 mRNA hsa-miR-599 C10orf68 miRanda miRanda
6022 chr2 105122721 105122721 1 + C T rs574077918 105122719 + 105122699 105122739 41 TCTAAGCCAGGTCTGACAGACTCCAAAGCAAGCCCTGTTTA TCTAAGCCAGGTCTGACAGACTTCAAAGCAAGCCCTGTTTA < 41bp 0.777569375207525 0.543872126024672 0.9545267 0.27454758 prediction 0.467394498365704 Functional Loss - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105122719 chr2:105122721 . . 0 23 hm5C_associated_SNPs_72688 0 0 0 6 105122718 105122741 mRNA hsa-miR-30a LOC150568 miRanda miRanda
6023 chr2 105122721 105122721 1 + C T rs574077918 105122719 + 105122699 105122739 41 TCTAAGCCAGGTCTGACAGACTCCAAAGCAAGCCCTGTTTA TCTAAGCCAGGTCTGACAGACTTCAAAGCAAGCCCTGTTTA < 41bp 0.777569375207525 0.543872126024672 0.9545267 0.27454758 prediction 0.467394498365704 Functional Loss - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105122719 chr2:105122721 . . 0 23 hm5C_associated_SNPs_72688 0 0 0 6 105122719 105122741 mRNA hsa-miR-30c LOC150568 miRanda miRanda
6024 chr2 105122721 105122721 1 + C T rs574077918 105122719 + 105122699 105122739 41 TCTAAGCCAGGTCTGACAGACTCCAAAGCAAGCCCTGTTTA TCTAAGCCAGGTCTGACAGACTTCAAAGCAAGCCCTGTTTA < 41bp 0.777569375207525 0.543872126024672 0.9545267 0.27454758 prediction 0.467394498365704 Functional Loss - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105122719 chr2:105122721 . . 0 23 hm5C_associated_SNPs_72688 0 0 0 6 105122720 105122741 mRNA hsa-miR-30d LOC150568 miRanda miRanda
6025 chr2 105122721 105122721 1 + C T rs574077918 105122719 + 105122699 105122739 41 TCTAAGCCAGGTCTGACAGACTCCAAAGCAAGCCCTGTTTA TCTAAGCCAGGTCTGACAGACTTCAAAGCAAGCCCTGTTTA < 41bp 0.777569375207525 0.543872126024672 0.9545267 0.27454758 prediction 0.467394498365704 Functional Loss - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105122719 chr2:105122721 . . 0 23 hm5C_associated_SNPs_72688 0 0 0 6 105122720 105122741 mRNA hsa-miR-30b LOC150568 miRanda miRanda
6026 chr2 105122721 105122721 1 + C T rs574077918 105122719 + 105122699 105122739 41 TCTAAGCCAGGTCTGACAGACTCCAAAGCAAGCCCTGTTTA TCTAAGCCAGGTCTGACAGACTTCAAAGCAAGCCCTGTTTA < 41bp 0.777569375207525 0.543872126024672 0.9545267 0.27454758 prediction 0.467394498365704 Functional Loss - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105122719 chr2:105122721 . . 0 23 hm5C_associated_SNPs_72688 0 0 0 6 105122712 105122735 mRNA hsa-miR-296-3p LOC150568 miRanda miRanda
6027 chr2 105122721 105122721 1 + C T rs574077918 105122719 + 105122699 105122739 41 TCTAAGCCAGGTCTGACAGACTCCAAAGCAAGCCCTGTTTA TCTAAGCCAGGTCTGACAGACTTCAAAGCAAGCCCTGTTTA < 41bp 0.777569375207525 0.543872126024672 0.9545267 0.27454758 prediction 0.467394498365704 Functional Loss - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105122719 chr2:105122721 . . 0 23 hm5C_associated_SNPs_72688 0 0 0 6 105122718 105122741 mRNA hsa-miR-30e LOC150568 miRanda miRanda
6028 chrX 37660601 37660601 1 + G T SARC 37660598 + 37660578 37660618 41 CAACAGAAGGTGGTCATCACCAAGGTACTGATTGGTTTAGT CAACAGAAGGTGGTCATCACCAATGTACTGATTGGTTTAGT < 41bp 0.733610970615047 0.34001792512662 0.8874122 0.13302907 prediction 0.467221941230094 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37660598 chrX:37660601 nonsynonymous SNV 0.989 5 24 hm5C_associated_SNPs_72731 0 0 0 1 37660601 37660601 mRNA hsa-miR-488 CYBB miRanda miRanda
6029 chr10 103314098 103314098 1 + G A rs41291482 103314095 + 103314075 103314115 41 CATCAGGGCCTGTGAATACCCAGGTGCCTGTATCTTTGCCA CATCAGGGCCTGTGAATACCCAGATGCCTGTATCTTTGCCA < 41bp 0.75319717308921 0.519613746694515 0.3666189 0.25838575 prediction 0.467166852789389 Functional Loss - BTRC ENSG00000166167 UTR3 Human protein_coding chr10:103314095 chr10:103314098 . . 0 24 hm5C_associated_SNPs_72747 0 0 1 1 103314094 103314115 mRNA hsa-miR-31 BTRC miRanda miRanda
6030 chrX 74494306 74494306 1 + A T UCEC 74494302 + 74494282 74494322 41 GACTCTGGGGCCTGCGGCGGCTCCAGCCTCAACTCAGAGGG GACTCTGGGGCCTGCGGCGGCTCCTGCCTCAACTCAGAGGG < 41bp 0.881902127750264 0.648362038056824 0.8051563 0.32082134 prediction 0.467080179386879 Functional Loss - UPRT ENSG00000094841 CDS Human protein_coding chrX:74494302 chrX:74494306 nonsynonymous SNV 0.006 2 25 hm5C_associated_SNPs_72769 0 0 0 1 74494289 74494312 mRNA hsa-miR-485-5p UPRT miRanda miRanda
6031 chr7 116166689 116166689 1 + G A HNSC 116166686 + 116166666 116166706 41 CAAGTGTACGACGCGCACACCAAGGAGATCGACCTGGTCAA CAAGTGTACGACGCGCACACCAAAGAGATCGACCTGGTCAA < 41bp 0.733524475669004 0.49109415409658 0.520116 0.35742128 prediction 0.467048951338008 Functional Loss - CAV1 ENSG00000105974 CDS Human protein_coding chr7:116166686 chr7:116166689 synonymous SNV . 0 24 hm5C_associated_SNPs_72774 0 0 1 1 116166680 116166702 mRNA hsa-miR-125a-3p CAV1 miRanda miRanda
6032 chr5 156895739 156895739 1 + G A SKCM 156895736 + 156895716 156895756 41 CCTTCGTTTCCTAGTGGCTGCTGGAGAAGTTGCCAACTTTG CCTTCGTTTCCTAGTGGCTGCTGAAGAAGTTGCCAACTTTG < 41bp 0.754035422259342 0.52057486019988 0.644076 0.38200632 prediction 0.466921124118925 Functional Loss - NIPAL4 ENSG00000172548 CDS Human protein_coding chr5:156895736 chr5:156895739 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_72823 0 0 0 1 156895730 156895752 mRNA hsa-miR-182 NIPAL4 miRanda miRanda
6033 chr20 42203600 42203600 1 + T C LUAD 42203599 + 42203579 42203619 41 CCTTATGATCGAGCAGTGGACTGGTGGTGCTTGGGGGCAGT CCTTATGATCGAGCAGTGGACCGGTGGTGCTTGGGGGCAGT < 41bp 0.765294579254736 0.53185241662505 0.30488956 0.25978535 prediction 0.466884325259371 Functional Loss - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42203599 chr20:42203600 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_72832 0 0 1 3 42203589 42203610 mRNA hsa-miR-29a SGK2 miRanda miRanda
6034 chr20 42203600 42203600 1 + T C LUAD 42203599 + 42203579 42203619 41 CCTTATGATCGAGCAGTGGACTGGTGGTGCTTGGGGGCAGT CCTTATGATCGAGCAGTGGACCGGTGGTGCTTGGGGGCAGT < 41bp 0.765294579254736 0.53185241662505 0.30488956 0.25978535 prediction 0.466884325259371 Functional Loss - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42203599 chr20:42203600 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_72832 0 0 1 3 42203590 42203610 mRNA hsa-miR-29b SGK2 miRanda miRanda
6035 chr20 42203600 42203600 1 + T C LUAD 42203599 + 42203579 42203619 41 CCTTATGATCGAGCAGTGGACTGGTGGTGCTTGGGGGCAGT CCTTATGATCGAGCAGTGGACCGGTGGTGCTTGGGGGCAGT < 41bp 0.765294579254736 0.53185241662505 0.30488956 0.25978535 prediction 0.466884325259371 Functional Loss - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42203599 chr20:42203600 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_72832 0 0 1 3 42203589 42203610 mRNA hsa-miR-29c SGK2 miRanda miRanda
6036 chr17 7286290 7286290 1 + G T THYM 7286288 + 7286268 7286308 41 TGTGGCTACTGAAGCTGCTCCGGGACATCCAGTTGGCCCAG TGTGGCTACTGAAGCTGCTCCGTGACATCCAGTTGGCCCAG < 41bp 0.901495482640803 0.668137244861976 0.9085666 0.22173205 prediction 0.466716475557654 Functional Loss - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7286288 chr17:7286290 synonymous SNV . 0 23 hm5C_associated_SNPs_72868 0 0 0 1 7286286 7286310 mRNA hsa-miR-193a-3p TNK1 miRanda miRanda
6037 chr22 40755001 40755001 1 + G A rs148411623 40754998 + 40754978 40755018 41 TAAAGGGTACCACTGGCACTCAGGCCAGTTTCCTGCAGCTC TAAAGGGTACCACTGGCACTCAGACCAGTTTCCTGCAGCTC < 41bp 0.753592259168509 0.520307429980166 0.93374574 0.91596776 prediction 0.466569658376687 Functional Loss - ADSL ENSG00000239900 CDS Human protein_coding chr22:40754998 chr22:40755001 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_72913 0 0 1 2 40754989 40755007 mRNA hsa-miR-193a-3p ADSL miRanda miRanda
6038 chr22 40755001 40755001 1 + G A rs148411623 40754998 + 40754978 40755018 41 TAAAGGGTACCACTGGCACTCAGGCCAGTTTCCTGCAGCTC TAAAGGGTACCACTGGCACTCAGACCAGTTTCCTGCAGCTC < 41bp 0.753592259168509 0.520307429980166 0.93374574 0.91596776 prediction 0.466569658376687 Functional Loss - ADSL ENSG00000239900 CDS Human protein_coding chr22:40754998 chr22:40755001 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_72913 0 0 1 2 40754987 40755007 mRNA hsa-miR-193b ADSL miRanda miRanda
6039 chr10 22016857 22016857 1 + G T READ 22016854 + 22016834 22016874 41 ACCCCGAGGAAGTCTCTCGCCACGGTAAGCGCTATTTACAC ACCCCGAGGAAGTCTCTCGCCACTGTAAGCGCTATTTACAC < 41bp 0.733147349476192 0.373094995124029 0.74113786 0.14433238 prediction 0.466294698952384 Functional Loss - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:22016854 chr10:22016857 nonsynonymous SNV 0.739 5 24 hm5C_associated_SNPs_72990 0 0 1 2 22016853 22016857 mRNA hsa-miR-302a MLLT10 miRanda miRanda
6040 chr10 22016857 22016857 1 + G T READ 22016854 + 22016834 22016874 41 ACCCCGAGGAAGTCTCTCGCCACGGTAAGCGCTATTTACAC ACCCCGAGGAAGTCTCTCGCCACTGTAAGCGCTATTTACAC < 41bp 0.733147349476192 0.373094995124029 0.74113786 0.14433238 prediction 0.466294698952384 Functional Loss - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:22016854 chr10:22016857 nonsynonymous SNV 0.739 5 24 hm5C_associated_SNPs_72990 0 0 1 2 22016853 22016857 mRNA hsa-miR-302b MLLT10 miRanda miRanda
6041 chr19 7987347 7987347 1 + G A READ 7987344 + 7987324 7987364 41 CACTAGAGTCCGCTGTGGTCCTCGACCTGCTCATGTCACTT CACTAGAGTCCGCTGTGGTCCTCAACCTGCTCATGTCACTT < 41bp 0.753873051780115 0.520898475125946 0.33894145 0.23286134 prediction 0.465949153308338 Functional Loss - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7987344 chr19:7987347 nonsynonymous SNV 0.636 0 24 hm5C_associated_SNPs_73091 0 0 1 1 7987331 7987353 mRNA hsa-miR-125a-3p SNAPC2 miRanda miRanda
6042 chr12 9995016 9995016 1 + C T LUSC 9995014 + 9994994 9995034 41 ATGGACTTGGGTGGATGGTTCTCCAATAGATTCAAAGATGT ATGGACTTGGGTGGATGGTTCTTCAATAGATTCAAAGATGT < 41bp 0.732962173014098 0.454297286623889 0.94877654 0.13089767 prediction 0.465924346028195 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9995014 chr12:9995016 nonsynonymous SNV 0.437 0 23 hm5C_associated_SNPs_73098 0 0 0 2 9994995 9995017 mRNA hsa-miR-146a KLRF1 miRanda miRanda
6043 chr12 9995016 9995016 1 + C T LUSC 9995014 + 9994994 9995034 41 ATGGACTTGGGTGGATGGTTCTCCAATAGATTCAAAGATGT ATGGACTTGGGTGGATGGTTCTTCAATAGATTCAAAGATGT < 41bp 0.732962173014098 0.454297286623889 0.94877654 0.13089767 prediction 0.465924346028195 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9995014 chr12:9995016 nonsynonymous SNV 0.437 0 23 hm5C_associated_SNPs_73098 0 0 0 2 9994997 9995017 mRNA hsa-miR-146b-5p KLRF1 miRanda miRanda
6044 chr7 149558040 149558040 1 + G A UCEC 149558037 + 149558017 149558057 41 TTAGGCAAGTACCGCAATCGCACGGCGTGCACTCAGTTCAT TTAGGCAAGTACCGCAATCGCACAGCGTGCACTCAGTTCAT < 41bp 0.785548358134026 0.552709543192595 0.15110707 0.04643348 prediction 0.465677629882862 Functional Loss - ZNF862 ENSG00000106479 CDS Human protein_coding chr7:149558037 chr7:149558040 synonymous SNV . 0 24 hm5C_associated_SNPs_73176 0 0 0 1 149558038 149558059 mRNA hsa-miR-146a ZNF862 miRanda miRanda
6045 chr1 172635292 172635292 1 + G T rs144742695 172635289 + 172635269 172635309 41 CCAAGTGGACCTTGAGACCACAGGGTTCAAAATGTCTGTAG CCAAGTGGACCTTGAGACCACAGTGTTCAAAATGTCTGTAG < 41bp 0.908329076617745 0.675722615918131 0.8648948 0.1975052 prediction 0.465212921399228 Functional Loss - FASLG ENSG00000117560 UTR3 Human protein_coding chr1:172635289 chr1:172635292 . . 0 24 hm5C_associated_SNPs_73319 0 0 0 2 172635273 172635295 mRNA hsa-miR-10a FASLG miRanda miRanda
6046 chr1 172635292 172635292 1 + G T rs144742695 172635289 + 172635269 172635309 41 CCAAGTGGACCTTGAGACCACAGGGTTCAAAATGTCTGTAG CCAAGTGGACCTTGAGACCACAGTGTTCAAAATGTCTGTAG < 41bp 0.908329076617745 0.675722615918131 0.8648948 0.1975052 prediction 0.465212921399228 Functional Loss - FASLG ENSG00000117560 UTR3 Human protein_coding chr1:172635289 chr1:172635292 . . 0 24 hm5C_associated_SNPs_73319 0 0 0 2 172635273 172635295 mRNA hsa-miR-10b FASLG miRanda miRanda
6047 chr22 18841245 18841245 1 + G T UCEC 18841242 + 18841222 18841262 41 CTGCCAGGACACGGATTGTCCAGGATTACATTCCAGCATCT CTGCCAGGACACGGATTGTCCAGTATTACATTCCAGCATCT < 41bp 0.732583947525116 0.373261471005631 0.76694787 0.13661054 prediction 0.465167895050233 Functional Loss - LOC102725072 ENSG00000161103;ENSG00000215544 intergenic Human other chr22:18841242 chr22:18841245 . . 0 24 hm5C_associated_SNPs_73330 0 0 0 4 18841235 18841256 mRNA hsa-miR-1 POM121L8P miRanda miRanda
6048 chr22 18841245 18841245 1 + G T UCEC 18841242 + 18841222 18841262 41 CTGCCAGGACACGGATTGTCCAGGATTACATTCCAGCATCT CTGCCAGGACACGGATTGTCCAGTATTACATTCCAGCATCT < 41bp 0.732583947525116 0.373261471005631 0.76694787 0.13661054 prediction 0.465167895050233 Functional Loss - LOC102725072 ENSG00000161103;ENSG00000215544 intergenic Human other chr22:18841242 chr22:18841245 . . 0 24 hm5C_associated_SNPs_73330 0 0 0 4 18841230 18841256 mRNA hsa-miR-206 POM121L8P miRanda miRanda
6049 chr22 18841245 18841245 1 + G T UCEC 18841242 + 18841222 18841262 41 CTGCCAGGACACGGATTGTCCAGGATTACATTCCAGCATCT CTGCCAGGACACGGATTGTCCAGTATTACATTCCAGCATCT < 41bp 0.732583947525116 0.373261471005631 0.76694787 0.13661054 prediction 0.465167895050233 Functional Loss - LOC102725072 ENSG00000161103;ENSG00000215544 intergenic Human other chr22:18841242 chr22:18841245 . . 0 24 hm5C_associated_SNPs_73330 0 0 0 4 18841243 18841264 mRNA hsa-miR-372 POM121L8P miRanda miRanda
6050 chr22 18841245 18841245 1 + G T UCEC 18841242 + 18841222 18841262 41 CTGCCAGGACACGGATTGTCCAGGATTACATTCCAGCATCT CTGCCAGGACACGGATTGTCCAGTATTACATTCCAGCATCT < 41bp 0.732583947525116 0.373261471005631 0.76694787 0.13661054 prediction 0.465167895050233 Functional Loss - LOC102725072 ENSG00000161103;ENSG00000215544 intergenic Human other chr22:18841242 chr22:18841245 . . 0 24 hm5C_associated_SNPs_73330 0 0 0 4 18841235 18841256 mRNA hsa-miR-613 POM121L8P miRanda miRanda
6051 chr11 12261023 12261023 1 + A T LUAD 12261019 + 12260999 12261039 41 GCCGTAGCTTGGGCTCCAATCAAGAGTGTGGGAGCAGTAAG GCCGTAGCTTGGGCTCCAATCAAGTGTGTGGGAGCAGTAAG < 41bp 0.871108187852558 0.638525339133677 0.8615182 0.8474759 prediction 0.46516569743776 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12261019 chr11:12261023 nonsynonymous SNV 0.099 0 25 hm5C_associated_SNPs_73332 0 0 0 1 12261011 12261033 mRNA hsa-miR-150 MICAL2 miRanda miRanda
6052 chr19 36206026 36206026 1 + C T COAD 36206024 + 36206004 36206044 41 GGAGAGAACAGGAGATGTTGCACAAGCACTCGCCACCAAGA GGAGAGAACAGGAGATGTTGCATAAGCACTCGCCACCAAGA < 41bp 0.788707617657345 0.556159297124188 0.14776155 0.13039926 prediction 0.465096641066314 Functional Loss - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36206024 chr19:36206026 synonymous SNV . 0 23 hm5C_associated_SNPs_73357 0 0 0 1 36206005 36206027 mRNA hsa-miR-505 ZBTB32 miRanda miRanda
6053 chr3 3170829 3170829 1 + C T rs368274081 3170827 + 3170807 3170847 41 TCACAATGAAGTTGCAGTCTCCCGAATTCCAGTCACTTTTC TCACAATGAAGTTGCAGTCTCCTGAATTCCAGTCACTTTTC < 41bp 0.834615934397391 0.602205086071807 0.12939945 0.068399906 prediction 0.464821696651169 Functional Loss - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3170827 chr3:3170829 synonymous SNV . 0 23 hm5C_associated_SNPs_73451 1 0 1 3 3170821 3170846 mRNA hsa-miR-93 TRNT1 miRanda miRanda
6054 chr3 3170829 3170829 1 + C T rs368274081 3170827 + 3170807 3170847 41 TCACAATGAAGTTGCAGTCTCCCGAATTCCAGTCACTTTTC TCACAATGAAGTTGCAGTCTCCTGAATTCCAGTCACTTTTC < 41bp 0.834615934397391 0.602205086071807 0.12939945 0.068399906 prediction 0.464821696651169 Functional Loss - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3170827 chr3:3170829 synonymous SNV . 0 23 hm5C_associated_SNPs_73451 1 0 1 3 3170822 3170843 mRNA hsa-miR-134 TRNT1 miRanda miRanda
6055 chr3 3170829 3170829 1 + C T rs368274081 3170827 + 3170807 3170847 41 TCACAATGAAGTTGCAGTCTCCCGAATTCCAGTCACTTTTC TCACAATGAAGTTGCAGTCTCCTGAATTCCAGTCACTTTTC < 41bp 0.834615934397391 0.602205086071807 0.12939945 0.068399906 prediction 0.464821696651169 Functional Loss - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3170827 chr3:3170829 synonymous SNV . 0 23 hm5C_associated_SNPs_73451 1 0 1 3 3170824 3170845 mRNA hsa-miR-372 TRNT1 miRanda miRanda
6056 chr17 48560755 48560755 1 + G A rs200350428 48560752 + 48560732 48560772 41 TGGAGGCCACACCCGGGAGGCTCGGATCCAGACACTGGAGC TGGAGGCCACACCCGGGAGGCTCAGATCCAGACACTGGAGC < 41bp 0.732385869015688 0.491603374657962 0.5343069 0.3531906 prediction 0.464771738031377 Functional Loss - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48560752 chr17:48560755 nonsynonymous SNV 0.811 2 24 hm5C_associated_SNPs_73464 0 0 1 3 48560748 48560770 mRNA hsa-miR-199a-5p RSAD1 miRanda miRanda
6057 chr17 48560755 48560755 1 + G A rs200350428 48560752 + 48560732 48560772 41 TGGAGGCCACACCCGGGAGGCTCGGATCCAGACACTGGAGC TGGAGGCCACACCCGGGAGGCTCAGATCCAGACACTGGAGC < 41bp 0.732385869015688 0.491603374657962 0.5343069 0.3531906 prediction 0.464771738031377 Functional Loss - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48560752 chr17:48560755 nonsynonymous SNV 0.811 2 24 hm5C_associated_SNPs_73464 0 0 1 3 48560748 48560770 mRNA hsa-miR-199b-5p RSAD1 miRanda miRanda
6058 chr17 48560755 48560755 1 + G A rs200350428 48560752 + 48560732 48560772 41 TGGAGGCCACACCCGGGAGGCTCGGATCCAGACACTGGAGC TGGAGGCCACACCCGGGAGGCTCAGATCCAGACACTGGAGC < 41bp 0.732385869015688 0.491603374657962 0.5343069 0.3531906 prediction 0.464771738031377 Functional Loss - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48560752 chr17:48560755 nonsynonymous SNV 0.811 2 24 hm5C_associated_SNPs_73464 0 0 1 3 48560732 48560757 mRNA hsa-miR-615-3p RSAD1 miRanda miRanda
6059 chr14 105926780 105926780 1 + C T SKCM 105926778 + 105926758 105926798 41 CATGAGCGCCGCAGCTGCCTCCCGAGACATCACCCTGGTAA CATGAGCGCCGCAGCTGCCTCCTGAGACATCACCCTGGTAA < 41bp 0.817903730380572 0.585558123426948 0.114349335 0.1452457 prediction 0.464691213907247 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105926778 chr14:105926780 stopgain 0.947 1 23 hm5C_associated_SNPs_73487 0 0 1 1 105926774 105926794 mRNA hsa-miR-125a-3p MTA1 miRanda miRanda
6060 chr2 26667734 26667734 1 + G A SKCM 26667731 + 26667711 26667751 41 CCCTGGGCAGCACCTGATTTCTGGTTCCTGAACAATGTTGG CCCTGGGCAGCACCTGATTTCTGATTCCTGAACAATGTTGG < 41bp 0.732328252840071 0.485446580190708 0.64314777 0.57524276 prediction 0.464656505680142 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26667731 chr2:26667734 stopgain 0.866 0 24 hm5C_associated_SNPs_73499 0 0 0 1 26667722 26667741 mRNA hsa-miR-873 C2orf39 miRanda miRanda
6061 chr19 580461 580461 1 + G A LUSC 580458 + 580438 580478 41 GCACGGCCAACATCCAGCTCCACGGTGAGTCCTGCAGCCAG GCACGGCCAACATCCAGCTCCACAGTGAGTCCTGCAGCCAG < 41bp 0.754623382199839 0.522427126420357 0.2737549 0.20826706 prediction 0.464392511558964 Functional Loss - BSG ENSG00000172270 CDS Human protein_coding chr19:580458 chr19:580461 nonsynonymous SNV 0.007 3 24 hm5C_associated_SNPs_73569 0 0 1 2 580450 580461 mRNA hsa-miR-330-5p BSG miRanda miRanda
6062 chr19 580461 580461 1 + G A LUSC 580458 + 580438 580478 41 GCACGGCCAACATCCAGCTCCACGGTGAGTCCTGCAGCCAG GCACGGCCAACATCCAGCTCCACAGTGAGTCCTGCAGCCAG < 41bp 0.754623382199839 0.522427126420357 0.2737549 0.20826706 prediction 0.464392511558964 Functional Loss - BSG ENSG00000172270 CDS Human protein_coding chr19:580458 chr19:580461 nonsynonymous SNV 0.007 3 24 hm5C_associated_SNPs_73569 0 0 1 2 580455 580461 mRNA hsa-miR-326 BSG miRanda miRanda
6063 chr17 34942353 34942353 1 + G T LUAD 34942351 + 34942331 34942371 41 AACAGGTTCTCGGGAGGGTTCGGATGTTGCCTGCACTGAAG AACAGGTTCTCGGGAGGGTTCGTATGTTGCCTGCACTGAAG < 41bp 0.732044529224882 0.38492747876612 0.8852719 0.092707545 prediction 0.464089058449764 Functional Loss - GGNBP2 ENSG00000005955 CDS Human other chr17:34942351 chr17:34942353 nonsynonymous SNV 0.968 3 23 hm5C_associated_SNPs_73674 0 0 1 5 34942343 34942369 mRNA hsa-miR-148a GGNBP2 miRanda miRanda
6064 chr17 34942353 34942353 1 + G T LUAD 34942351 + 34942331 34942371 41 AACAGGTTCTCGGGAGGGTTCGGATGTTGCCTGCACTGAAG AACAGGTTCTCGGGAGGGTTCGTATGTTGCCTGCACTGAAG < 41bp 0.732044529224882 0.38492747876612 0.8852719 0.092707545 prediction 0.464089058449764 Functional Loss - GGNBP2 ENSG00000005955 CDS Human other chr17:34942351 chr17:34942353 nonsynonymous SNV 0.968 3 23 hm5C_associated_SNPs_73674 0 0 1 5 34942351 34942373 mRNA hsa-miR-205 GGNBP2 miRanda miRanda
6065 chr17 34942353 34942353 1 + G T LUAD 34942351 + 34942331 34942371 41 AACAGGTTCTCGGGAGGGTTCGGATGTTGCCTGCACTGAAG AACAGGTTCTCGGGAGGGTTCGTATGTTGCCTGCACTGAAG < 41bp 0.732044529224882 0.38492747876612 0.8852719 0.092707545 prediction 0.464089058449764 Functional Loss - GGNBP2 ENSG00000005955 CDS Human other chr17:34942351 chr17:34942353 nonsynonymous SNV 0.968 3 23 hm5C_associated_SNPs_73674 0 0 1 5 34942344 34942369 mRNA hsa-miR-152 GGNBP2 miRanda miRanda
6066 chr17 34942353 34942353 1 + G T LUAD 34942351 + 34942331 34942371 41 AACAGGTTCTCGGGAGGGTTCGGATGTTGCCTGCACTGAAG AACAGGTTCTCGGGAGGGTTCGTATGTTGCCTGCACTGAAG < 41bp 0.732044529224882 0.38492747876612 0.8852719 0.092707545 prediction 0.464089058449764 Functional Loss - GGNBP2 ENSG00000005955 CDS Human other chr17:34942351 chr17:34942353 nonsynonymous SNV 0.968 3 23 hm5C_associated_SNPs_73674 0 0 1 5 34942343 34942369 mRNA hsa-miR-148b GGNBP2 miRanda miRanda
6067 chr17 34942353 34942353 1 + G T LUAD 34942351 + 34942331 34942371 41 AACAGGTTCTCGGGAGGGTTCGGATGTTGCCTGCACTGAAG AACAGGTTCTCGGGAGGGTTCGTATGTTGCCTGCACTGAAG < 41bp 0.732044529224882 0.38492747876612 0.8852719 0.092707545 prediction 0.464089058449764 Functional Loss - GGNBP2 ENSG00000005955 CDS Human other chr17:34942351 chr17:34942353 nonsynonymous SNV 0.968 3 23 hm5C_associated_SNPs_73674 0 0 1 5 34942343 34942364 mRNA hsa-miR-873 GGNBP2 miRanda miRanda
6068 chr7 137790167 137790167 1 + A C LUAD 137790166 + 137790146 137790186 41 GGACTCAAACACAAGCCAGTCAGCAACCAGGTACAGCCTAA GGACTCAAACACAAGCCAGTCCGCAACCAGGTACAGCCTAA < 41bp 0.785087202597775 0.553076602200891 0.2888617 0.12726256 prediction 0.464021200793768 Functional Loss - AKR1D1 ENSG00000122787 CDS Human protein_coding chr7:137790166 chr7:137790167 nonsynonymous SNV 0.930 1 22 hm5C_associated_SNPs_73694 0 0 0 2 137790167 137790175 mRNA hsa-miR-183 AKR1D1 miRanda miRanda
6069 chr7 137790167 137790167 1 + A C LUAD 137790166 + 137790146 137790186 41 GGACTCAAACACAAGCCAGTCAGCAACCAGGTACAGCCTAA GGACTCAAACACAAGCCAGTCCGCAACCAGGTACAGCCTAA < 41bp 0.785087202597775 0.553076602200891 0.2888617 0.12726256 prediction 0.464021200793768 Functional Loss - AKR1D1 ENSG00000122787 CDS Human protein_coding chr7:137790166 chr7:137790167 nonsynonymous SNV 0.930 1 22 hm5C_associated_SNPs_73694 0 0 0 2 137790159 137790175 mRNA hsa-miR-490-3p AKR1D1 miRanda miRanda
6070 chr2 228786194 228786194 1 + G A PRAD 228786191 + 228786171 228786211 41 TAGAATCTGGGATGCTCAGACTGGCCAGTGCCTCCAGGTTC TAGAATCTGGGATGCTCAGACTGACCAGTGCCTCCAGGTTC < 41bp 0.731997121162324 0.49051155594982 0.23038688 0.14731565 prediction 0.463994242324649 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228786191 chr2:228786194 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_73701 0 0 0 3 228786176 228786200 mRNA hsa-miR-193a-3p WDR69 miRanda miRanda
6071 chr2 228786194 228786194 1 + G A PRAD 228786191 + 228786171 228786211 41 TAGAATCTGGGATGCTCAGACTGGCCAGTGCCTCCAGGTTC TAGAATCTGGGATGCTCAGACTGACCAGTGCCTCCAGGTTC < 41bp 0.731997121162324 0.49051155594982 0.23038688 0.14731565 prediction 0.463994242324649 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228786191 chr2:228786194 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_73701 0 0 0 3 228786187 228786211 mRNA hsa-miR-490-3p WDR69 miRanda miRanda
6072 chr2 228786194 228786194 1 + G A PRAD 228786191 + 228786171 228786211 41 TAGAATCTGGGATGCTCAGACTGGCCAGTGCCTCCAGGTTC TAGAATCTGGGATGCTCAGACTGACCAGTGCCTCCAGGTTC < 41bp 0.731997121162324 0.49051155594982 0.23038688 0.14731565 prediction 0.463994242324649 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228786191 chr2:228786194 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_73701 0 0 0 3 228786176 228786200 mRNA hsa-miR-193b WDR69 miRanda miRanda
6073 chr5 147040544 147040544 1 + G A SKCM 147040541 + 147040521 147040561 41 ATATCCCGCTCCGACTCCCACTTGATCTTCGAGATGGCTTC ATATCCCGCTCCGACTCCCACTTAATCTTCGAGATGGCTTC < 41bp 0.745507383205461 0.513570975199562 0.058393687 0.015216023 prediction 0.463872816011797 Functional Loss - JAKMIP2 ENSG00000176049 CDS Human protein_coding chr5:147040541 chr5:147040544 synonymous SNV . 0 24 hm5C_associated_SNPs_73746 0 0 0 1 147040542 147040565 mRNA hsa-miR-335 LOC153469 miRanda miRanda
6074 chr19 44516294 44516294 1 + C T rs60620675 44516292 + 44516272 44516312 41 CTTATGCCTCAGAGGCTTGACACAAGAGCAAAACTATGGAA CTTATGCCTCAGAGGCTTGACATAAGAGCAAAACTATGGAA < 41bp 0.745406370062668 0.513593445733558 0.16632062 0.23221573 prediction 0.463625848658219 Functional Loss - ZNF230 ENSG00000159882 UTR3 Human protein_coding chr19:44516292 chr19:44516294 . . 0 23 hm5C_associated_SNPs_73830 0 0 0 1 44516277 44516297 mRNA hsa-miR-599 ZNF230 miRanda miRanda
6075 chr16 2257280 2257280 1 + C T STAD 2257278 + 2257258 2257298 41 ACGAGCAGCTGATCCCTGAGCCCGAGGTCTCCATCACGTCC ACGAGCAGCTGATCCCTGAGCCTGAGGTCTCCATCACGTCC < 41bp 0.731806209628809 0.462325846946399 0.10036805 0.07875803 prediction 0.463612419257618 Functional Loss - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2257278 chr16:2257280 synonymous SNV . 0 23 hm5C_associated_SNPs_73837 0 0 1 1 2257257 2257280 mRNA hsa-miR-24 MLST8 miRanda miRanda
6076 chr8 32621861 32621861 1 + G T STAD 32621858 + 32621838 32621878 41 CAGCAGGCCGCTTCTCGACACAGGAAGAAATCCAGGCCAGG CAGCAGGCCGCTTCTCGACACAGTAAGAAATCCAGGCCAGG < 41bp 0.788062127351202 0.556273510548113 0.90232223 0.19173831 prediction 0.463577233606177 Functional Loss - NRG1 ENSG00000157168 CDS Human protein_coding chr8:32621858 chr8:32621861 stopgain 0.997 1 24 hm5C_associated_SNPs_73854 0 0 0 1 32621850 32621871 mRNA hsa-miR-876-5p NRG1 miRanda miRanda
6077 chr13 70681760 70681760 1 + G T LUSC 70681757 + 70681737 70681777 41 GGGCCGCCGGTGGAAGGAGACGGGTGGCTGAAGAGTTTCCA GGGCCGCCGGTGGAAGGAGACGGTTGGCTGAAGAGTTTCCA < 41bp 0.915890434601718 0.684302862079502 0.8848656 0.5630048 prediction 0.463175145044432 Functional Loss - KLHL1 ENSG00000150361 CDS Human protein_coding chr13:70681757 chr13:70681760 nonsynonymous SNV 0.899 5 24 hm5C_associated_SNPs_73979 0 0 0 1 70681745 70681768 mRNA hsa-miR-197 ATXN8OS miRanda miRanda
6078 chr18 47920414 47920414 1 + A T rs74730636 47920410 + 47920390 47920430 41 TGTGCCAGGAAGGTGACGCACTCCAGCTTTATGAAGTCAGC TGTGCCAGGAAGGTGACGCACTCCTGCTTTATGAAGTCAGC < 41bp 0.83469427428798 0.603186540708828 0.76115954 0.05049157 prediction 0.463015467158304 Functional Loss - SKA1 ENSG00000154839 UTR3 Human protein_coding chr18:47920410 chr18:47920414 . . 0 25 hm5C_associated_SNPs_74042 0 0 1 4 47920399 47920420 mRNA hsa-miR-320a SKA1 miRanda miRanda
6079 chr18 47920414 47920414 1 + A T rs74730636 47920410 + 47920390 47920430 41 TGTGCCAGGAAGGTGACGCACTCCAGCTTTATGAAGTCAGC TGTGCCAGGAAGGTGACGCACTCCTGCTTTATGAAGTCAGC < 41bp 0.83469427428798 0.603186540708828 0.76115954 0.05049157 prediction 0.463015467158304 Functional Loss - SKA1 ENSG00000154839 UTR3 Human protein_coding chr18:47920410 chr18:47920414 . . 0 25 hm5C_associated_SNPs_74042 0 0 1 4 47920399 47920420 mRNA hsa-miR-320b SKA1 miRanda miRanda
6080 chr18 47920414 47920414 1 + A T rs74730636 47920410 + 47920390 47920430 41 TGTGCCAGGAAGGTGACGCACTCCAGCTTTATGAAGTCAGC TGTGCCAGGAAGGTGACGCACTCCTGCTTTATGAAGTCAGC < 41bp 0.83469427428798 0.603186540708828 0.76115954 0.05049157 prediction 0.463015467158304 Functional Loss - SKA1 ENSG00000154839 UTR3 Human protein_coding chr18:47920410 chr18:47920414 . . 0 25 hm5C_associated_SNPs_74042 0 0 1 4 47920401 47920420 mRNA hsa-miR-320c SKA1 miRanda miRanda
6081 chr18 47920414 47920414 1 + A T rs74730636 47920410 + 47920390 47920430 41 TGTGCCAGGAAGGTGACGCACTCCAGCTTTATGAAGTCAGC TGTGCCAGGAAGGTGACGCACTCCTGCTTTATGAAGTCAGC < 41bp 0.83469427428798 0.603186540708828 0.76115954 0.05049157 prediction 0.463015467158304 Functional Loss - SKA1 ENSG00000154839 UTR3 Human protein_coding chr18:47920410 chr18:47920414 . . 0 25 hm5C_associated_SNPs_74042 0 0 1 4 47920402 47920420 mRNA hsa-miR-320d SKA1 miRanda miRanda
6082 chr11 58723663 58723663 1 + G A rs537616071 58723660 + 58723640 58723680 41 TTAAAAGACACAGCCATGCTCTTGAGGAGCTTACAATCCTG TTAAAAGACACAGCCATGCTCTTAAGGAGCTTACAATCCTG < 41bp 0.733915210285287 0.502423127009841 0.07146394 0.050501943 prediction 0.462984166550892 Functional Loss - LOC283194 ENSG00000255240 ncRNA_intronic Human antisense chr11:58723660 chr11:58723663 . . 0 24 hm5C_associated_SNPs_74059 0 0 0 1 58723642 58723664 mRNA hsa-miR-335 GLYATL1 miRanda miRanda
6083 chr7 156451171 156451171 1 + G T BLCA 156451168 + 156451148 156451188 41 TGTTTTAGAATCCAAGCCTACTGGAGAGGATGTGTTGTTAG TGTTTTAGAATCCAAGCCTACTGTAGAGGATGTGTTGTTAG < 41bp 0.731472580016475 0.359173039839752 0.088733196 0.067964405 prediction 0.462945160032949 Functional Loss - RNF32 ENSG00000105982 CDS Human protein_coding chr7:156451168 chr7:156451171 nonsynonymous SNV 0.925 4 24 hm5C_associated_SNPs_74069 0 0 0 1 156451159 156451183 mRNA hsa-miR-362-3p RNF32 miRanda miRanda
6084 chr18 32827018 32827018 1 + G C rs116351575 32827014 + 32826994 32827034 41 GAAGGATGAGGAGGAGTTAGCCAAGGTGGTACTCTAGGGAA GAAGGATGAGGAGGAGTTAGCCAACGTGGTACTCTAGGGAA < 41bp 0.731450724483884 0.482099034723127 0.9009403 0.4565266 prediction 0.462901448967768 Functional Loss - ZNF397 ENSG00000186812 UTR3 Human protein_coding chr18:32827014 chr18:32827018 . . 0 25 hm5C_associated_SNPs_74084 0 0 1 1 32827012 32827033 mRNA hsa-miR-125b ZNF397 miRanda miRanda
6085 chr8 133790104 133790104 1 + A C READ 133790100 + 133790080 133790120 41 TAAAAAGCCCCCAAATCGCCCTGGAATCACTTTTGAGATTG TAAAAAGCCCCCAAATCGCCCTGGCATCACTTTTGAGATTG < 41bp 0.731427447644464 0.325275858011809 0.5159533 0.30821258 prediction 0.462854895288929 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133790100 chr8:133790104 synonymous SNV . 0 25 hm5C_associated_SNPs_74102 0 0 0 3 133790104 133790126 mRNA hsa-miR-29a PHF20L1 miRanda miRanda
6086 chr8 133790104 133790104 1 + A C READ 133790100 + 133790080 133790120 41 TAAAAAGCCCCCAAATCGCCCTGGAATCACTTTTGAGATTG TAAAAAGCCCCCAAATCGCCCTGGCATCACTTTTGAGATTG < 41bp 0.731427447644464 0.325275858011809 0.5159533 0.30821258 prediction 0.462854895288929 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133790100 chr8:133790104 synonymous SNV . 0 25 hm5C_associated_SNPs_74102 0 0 0 3 133790099 133790120 mRNA hsa-miR-216a PHF20L1 miRanda miRanda
6087 chr8 133790104 133790104 1 + A C READ 133790100 + 133790080 133790120 41 TAAAAAGCCCCCAAATCGCCCTGGAATCACTTTTGAGATTG TAAAAAGCCCCCAAATCGCCCTGGCATCACTTTTGAGATTG < 41bp 0.731427447644464 0.325275858011809 0.5159533 0.30821258 prediction 0.462854895288929 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133790100 chr8:133790104 synonymous SNV . 0 25 hm5C_associated_SNPs_74102 0 0 0 3 133790103 133790126 mRNA hsa-miR-29c PHF20L1 miRanda miRanda
6088 chr11 65631144 65631144 1 + G A COAD 65631141 + 65631121 65631161 41 CCCACACGGTGCGCAAGCTGCACGTTGGAGATTTTGTGTGG CCCACACGGTGCGCAAGCTGCACATTGGAGATTTTGTGTGG < 41bp 0.767670110422134 0.536267180577511 0.22882333 0.16110545 prediction 0.462805859689244 Functional Loss - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65631141 chr11:65631144 nonsynonymous SNV 0.958 1 24 hm5C_associated_SNPs_74115 0 0 1 1 65631132 65631154 mRNA hsa-miR-216a MUS81 miRanda miRanda
6089 chr20 2844013 2844013 1 + G T SARC 2844011 + 2843991 2844031 41 CTTCCTGAAGTACAGGGCGTCAGCAGGATCCTGGCCCACTG CTTCCTGAAGTACAGGGCGTCATCAGGATCCTGGCCCACTG < 41bp 0.90277515916727 0.671480692519093 0.8184999 0.32623154 prediction 0.462588933296355 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2844011 chr20:2844013 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_74174 0 0 1 1 2843997 2844018 mRNA hsa-miR-370 VPS16 miRanda miRanda
6090 chr12 77158109 77158109 1 + G C LUAD 77158105 + 77158085 77158125 41 CTGTGTGCCCCTTCTCCACCCAGAGGTGAGGAACCGTGCTG CTGTGTGCCCCTTCTCCACCCAGACGTGAGGAACCGTGCTG < 41bp 0.839305229870036 0.608049954209294 0.9240352 0.31679857 prediction 0.462510551321484 Functional Loss - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77158105 chr12:77158109 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_74201 0 0 1 4 77158102 77158109 mRNA hsa-miR-135a ZDHHC17 miRanda miRanda
6091 chr12 77158109 77158109 1 + G C LUAD 77158105 + 77158085 77158125 41 CTGTGTGCCCCTTCTCCACCCAGAGGTGAGGAACCGTGCTG CTGTGTGCCCCTTCTCCACCCAGACGTGAGGAACCGTGCTG < 41bp 0.839305229870036 0.608049954209294 0.9240352 0.31679857 prediction 0.462510551321484 Functional Loss - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77158105 chr12:77158109 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_74201 0 0 1 4 77158089 77158109 mRNA hsa-miR-330-5p ZDHHC17 miRanda miRanda
6092 chr12 77158109 77158109 1 + G C LUAD 77158105 + 77158085 77158125 41 CTGTGTGCCCCTTCTCCACCCAGAGGTGAGGAACCGTGCTG CTGTGTGCCCCTTCTCCACCCAGACGTGAGGAACCGTGCTG < 41bp 0.839305229870036 0.608049954209294 0.9240352 0.31679857 prediction 0.462510551321484 Functional Loss - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77158105 chr12:77158109 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_74201 0 0 1 4 77158091 77158109 mRNA hsa-miR-326 ZDHHC17 miRanda miRanda
6093 chr12 77158109 77158109 1 + G C LUAD 77158105 + 77158085 77158125 41 CTGTGTGCCCCTTCTCCACCCAGAGGTGAGGAACCGTGCTG CTGTGTGCCCCTTCTCCACCCAGACGTGAGGAACCGTGCTG < 41bp 0.839305229870036 0.608049954209294 0.9240352 0.31679857 prediction 0.462510551321484 Functional Loss - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77158105 chr12:77158109 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_74201 0 0 1 4 77158102 77158109 mRNA hsa-miR-135b ZDHHC17 miRanda miRanda
6094 chr7 5870880 5870880 1 + G A rs74373007 5870877 + 5870857 5870897 41 GACTTGCGTAGGAGAGCAGACACGAGGACATGAGCCAGTTC GACTTGCGTAGGAGAGCAGACACAAGGACATGAGCCAGTTC < 41bp 0.744057006618107 0.512992639766433 0.47736672 0.5747307 prediction 0.462128733703347 Functional Loss - ZNF815P ENSG00000235944 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5870877 chr7:5870880 . . 0 24 hm5C_associated_SNPs_74325 0 0 0 2 5870861 5870881 mRNA hsa-miR-187 ZNF815 miRanda miRanda
6095 chr7 5870880 5870880 1 + G A rs74373007 5870877 + 5870857 5870897 41 GACTTGCGTAGGAGAGCAGACACGAGGACATGAGCCAGTTC GACTTGCGTAGGAGAGCAGACACAAGGACATGAGCCAGTTC < 41bp 0.744057006618107 0.512992639766433 0.47736672 0.5747307 prediction 0.462128733703347 Functional Loss - ZNF815P ENSG00000235944 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5870877 chr7:5870880 . . 0 24 hm5C_associated_SNPs_74325 0 0 0 2 5870874 5870895 mRNA hsa-miR-149 ZNF815 miRanda miRanda
6096 chr3 197483348 197483348 1 + G T UCEC 197483345 + 197483325 197483365 41 AGGGAAGAAGCAGAATTTTCCAAGACTAAATAGAAGACTCC AGGGAAGAAGCAGAATTTTCCAATACTAAATAGAAGACTCC < 41bp 0.731026095885656 0.45716038032433 0.25309885 0.061369717 prediction 0.462052191771311 Functional Loss - FYTTD1 ENSG00000122068 CDS Human protein_coding chr3:197483345 chr3:197483348 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_74353 0 0 1 1 197483344 197483367 mRNA hsa-miR-708 FYTTD1 miRanda miRanda
6097 chr7 116538860 116538860 1 + C T OV 116538858 + 116538838 116538878 41 GTATAACTTGGACCAGTTTACTCCAGTAAAAATTGAAGGTT GTATAACTTGGACCAGTTTACTTCAGTAAAAATTGAAGGTT < 41bp 0.856384783557321 0.625465203200446 0.90825766 0.15827352 prediction 0.461839160713749 Functional Loss - CAPZA2 ENSG00000198898 CDS Human protein_coding chr7:116538858 chr7:116538860 nonsynonymous SNV 0.984 2 23 hm5C_associated_SNPs_74411 0 0 1 2 116538854 116538877 mRNA hsa-miR-205 CAPZA2 miRanda miRanda
6098 chr7 116538860 116538860 1 + C T OV 116538858 + 116538838 116538878 41 GTATAACTTGGACCAGTTTACTCCAGTAAAAATTGAAGGTT GTATAACTTGGACCAGTTTACTTCAGTAAAAATTGAAGGTT < 41bp 0.856384783557321 0.625465203200446 0.90825766 0.15827352 prediction 0.461839160713749 Functional Loss - CAPZA2 ENSG00000198898 CDS Human protein_coding chr7:116538858 chr7:116538860 nonsynonymous SNV 0.984 2 23 hm5C_associated_SNPs_74411 0 0 1 2 116538841 116538864 mRNA hsa-miR-422a CAPZA2 miRanda miRanda
6099 chr17 18003719 18003719 1 + C T BLCA 18003717 + 18003697 18003737 41 TGGAGTCTGTGGGCATCCGCCTCAACAAGCACAAGCCTAAC TGGAGTCTGTGGGCATCCGCCTTAACAAGCACAAGCCTAAC < 41bp 0.730901459436791 0.431627509996157 0.124058306 0.06505367 prediction 0.461802918873581 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18003717 chr17:18003719 stopgain . 0 23 hm5C_associated_SNPs_74421 0 0 1 1 18003710 18003730 mRNA hsa-miR-218 DRG2 miRanda miRanda
6100 chr6 26413495 26413495 1 + G A ESCA 26413492 + 26413472 26413512 41 CCAAGGAGCCCCAGGATCTGCCAGACAACCCTGAGAGATTT CCAAGGAGCCCCAGGATCTGCCAAACAACCCTGAGAGATTT < 41bp 0.734086381275423 0.503206807803486 0.4348271 0.34357 prediction 0.461759146943875 Functional Loss - BTN3A1 ENSG00000026950 CDS Human protein_coding chr6:26413492 chr6:26413495 nonsynonymous SNV 0.007 2 24 hm5C_associated_SNPs_74428 0 0 0 1 26413492 26413512 mRNA hsa-miR-216b BTN3A1 miRanda miRanda
6101 chr16 22926300 22926300 1 + C T LUSC 22926298 + 22926278 22926318 41 AGGACCCTCGAGAGCCAGATCACGCTGGAGAAGACGCCCAG AGGACCCTCGAGAGCCAGATCATGCTGGAGAAGACGCCCAG < 41bp 0.73083636373063 0.46162196802853 0.43582654 0.41775176 prediction 0.46167272746126 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926298 chr16:22926300 nonsynonymous SNV 0.981 4 23 hm5C_associated_SNPs_74457 0 0 0 2 22926280 22926305 mRNA hsa-miR-125a-3p HS3ST2 miRanda miRanda
6102 chr16 22926300 22926300 1 + C T LUSC 22926298 + 22926278 22926318 41 AGGACCCTCGAGAGCCAGATCACGCTGGAGAAGACGCCCAG AGGACCCTCGAGAGCCAGATCATGCTGGAGAAGACGCCCAG < 41bp 0.73083636373063 0.46162196802853 0.43582654 0.41775176 prediction 0.46167272746126 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926298 chr16:22926300 nonsynonymous SNV 0.981 4 23 hm5C_associated_SNPs_74457 0 0 0 2 22926279 22926301 mRNA hsa-miR-134 HS3ST2 miRanda miRanda
6103 chr20 43805134 43805134 1 + G C rs35869085 43805130 + 43805110 43805150 41 TTCCTCCCATTCAGGATGCCCACGGCTGGAGCTGCCTCTCT TTCCTCCCATTCAGGATGCCCACGCCTGGAGCTGCCTCTCT < 41bp 0.798833021980319 0.568063481592744 0.055986106 0.0086788535 prediction 0.46153908077515 Functional Loss - PI3 ENSG00000124102 UTR3 Human protein_coding chr20:43805130 chr20:43805134 . . 0 25 hm5C_associated_SNPs_74493 0 0 0 1 43805126 43805147 mRNA hsa-miR-28-5p PI3 miRanda miRanda
6104 chr9 133967192 133967192 1 + G A rs187922750 133967189 + 133967169 133967209 41 CAGTGAGGGCTGCCCAGATCCCCGGCACACACTCCCCCACC CAGTGAGGGCTGCCCAGATCCCCAGCACACACTCCCCCACC < 41bp 0.744108439542333 0.513409925103307 0.1885482 0.08977008 prediction 0.461397028878053 Functional Loss - LAMC3 ENSG00000050555 UTR3 Human protein_coding chr9:133967189 chr9:133967192 . . 0 24 hm5C_associated_SNPs_74531 0 0 1 1 133967183 133967204 mRNA hsa-miR-122 LAMC3 miRanda miRanda
6105 chr3 197894586 197894586 1 + G A SARC 197894583 + 197894563 197894603 41 AGGAGGGGGCGCACATCCGCCGAGAAACTGTGAGCAAGAGC AGGAGGGGGCGCACATCCGCCGAAAAACTGTGAGCAAGAGC < 41bp 0.730682746637778 0.492938091627848 0.16140854 0.1032885 prediction 0.461365493275556 Functional Loss - FAM157A;FAM157B ENSG00000236438 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:197894583 chr3:197894586 . . 0 24 hm5C_associated_SNPs_74541 0 0 0 2 197894576 197894596 mRNA hsa-miR-27a LOC100134822 miRanda miRanda
6106 chr3 197894586 197894586 1 + G A SARC 197894583 + 197894563 197894603 41 AGGAGGGGGCGCACATCCGCCGAGAAACTGTGAGCAAGAGC AGGAGGGGGCGCACATCCGCCGAAAAACTGTGAGCAAGAGC < 41bp 0.730682746637778 0.492938091627848 0.16140854 0.1032885 prediction 0.461365493275556 Functional Loss - FAM157A;FAM157B ENSG00000236438 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:197894583 chr3:197894586 . . 0 24 hm5C_associated_SNPs_74541 0 0 0 2 197894576 197894596 mRNA hsa-miR-27b LOC100134822 miRanda miRanda
6107 chr10 94821918 94821918 1 + A C rs201284617 94821917 + 94821897 94821937 41 TGGTGCGCAGCCAGTGGCCGCAGAGTGCGCACATCCTGCTG TGGTGCGCAGCCAGTGGCCGCCGAGTGCGCACATCCTGCTG < 41bp 0.805494958720779 0.574824481086083 0.8218125 0.8689567 prediction 0.461340955269391 Functional Loss - CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94821917 chr10:94821918 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_74546 0 0 0 1 94821917 94821938 mRNA hsa-miR-214 CYP26C1 miRanda miRanda
6108 chr3 51897343 51897343 1 + C T LUAD 51897341 + 51897321 51897361 41 CTCCAGGGCCACTGTGTGGTCACAGCCACTCACCTGCAGTT CTCCAGGGCCACTGTGTGGTCATAGCCACTCACCTGCAGTT < 41bp 0.730647415838557 0.490064796678183 0.49048474 0.37026745 prediction 0.461294831677113 Functional Loss - IQCF2 ENSG00000184345 CDS Human protein_coding chr3:51897341 chr3:51897343 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_74555 0 0 0 1 51897337 51897357 mRNA hsa-miR-125a-3p IQCF2 miRanda miRanda
6109 chr22 42905063 42905063 1 + G A PRAD 42905060 + 42905040 42905080 41 AACAGCATTGACTTCGTCAGCAGGGAGCTGTGTGCGCATTC AACAGCATTGACTTCGTCAGCAGAGAGCTGTGTGCGCATTC < 41bp 0.750741517773889 0.520120991142859 0.9061616 0.87067485 prediction 0.461241053262061 Functional Loss - SERHL ENSG00000172250 ncRNA_exonic Human processed_transcript chr22:42905060 chr22:42905063 . . 0 24 hm5C_associated_SNPs_74576 0 0 1 1 42905040 42905064 mRNA hsa-miR-370 SERHL miRanda miRanda
6110 chr12 58121825 58121825 1 + C T UCEC 58121823 + 58121803 58121843 41 AACTGGCTGCCTCAAAGTGCCACGTCTGACCCGTGCTGGAC AACTGGCTGCCTCAAAGTGCCATGTCTGACCCGTGCTGGAC < 41bp 0.730840242355721 0.500261046897687 0.06736195 0.24248448 prediction 0.461158390916068 Functional Loss - AGAP2 ENSG00000135439 CDS Human protein_coding chr12:58121823 chr12:58121825 synonymous SNV . 0 23 hm5C_associated_SNPs_74612 0 0 0 1 58121818 58121841 mRNA hsa-miR-214 LOC100130776 miRanda miRanda
6111 chr3 195400700 195400700 1 + C T UCEC 195400698 + 195400678 195400718 41 CCTTTCCACAGGTCCTGAGGCACGGGAATGGCCAGGATCAG CCTTTCCACAGGTCCTGAGGCATGGGAATGGCCAGGATCAG < 41bp 0.730511045210685 0.487470946099706 0.24365312 0.21906188 prediction 0.46102209042137 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195400698 chr3:195400700 . . 0 23 hm5C_associated_SNPs_74651 0 0 1 1 195400693 195400712 lncRNA hsa-miR-3187-3p MUC20-OT1 miRanda starBase2
6112 chr19 58117677 58117677 1 + G A rs9676259 58117674 + 58117654 58117694 41 TTCTTCGACACAGGAAAGCACACGGTAGAACAAGGACTCAT TTCTTCGACACAGGAAAGCACACAGTAGAACAAGGACTCAT < 41bp 0.751250712224355 0.520741837522839 0.35030234 0.26391047 prediction 0.461017749403032 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58117674 chr19:58117677 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_74655 0 0 1 1 58117652 58117678 mRNA hsa-miR-187 ZNF530 miRanda miRanda
6113 chr12 32480435 32480435 1 + A T LUAD 32480431 + 32480411 32480451 41 CCATTCTTTTGGCCAACCTACAGGAGTCACAGACACAGCTG CCATTCTTTTGGCCAACCTACAGGTGTCACAGACACAGCTG < 41bp 0.87978559605363 0.649296279823692 0.3080941 0.36176562 prediction 0.460978632459877 Functional Loss - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32480431 chr12:32480435 nonsynonymous SNV 0.983 3 25 hm5C_associated_SNPs_74666 0 0 0 1 32480428 32480453 mRNA hsa-miR-199a-5p BICD1 miRanda miRanda
6114 chr17 29280326 29280326 1 + G A BLCA 29280323 + 29280303 29280343 41 CAGCTCGTGCCATTCCTCACCAGGAACTACCTCAAACAAGG CAGCTCGTGCCATTCCTCACCAGAAACTACCTCAAACAAGG < 41bp 0.751023066628721 0.520570189711054 0.8073315 0.48907277 prediction 0.460905753835334 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29280323 chr17:29280326 synonymous SNV . 0 24 hm5C_associated_SNPs_74694 0 0 0 11 29280315 29280336 mRNA hsa-let-7a ADAP2 miRanda miRanda
6115 chr17 29280326 29280326 1 + G A BLCA 29280323 + 29280303 29280343 41 CAGCTCGTGCCATTCCTCACCAGGAACTACCTCAAACAAGG CAGCTCGTGCCATTCCTCACCAGAAACTACCTCAAACAAGG < 41bp 0.751023066628721 0.520570189711054 0.8073315 0.48907277 prediction 0.460905753835334 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29280323 chr17:29280326 synonymous SNV . 0 24 hm5C_associated_SNPs_74694 0 0 0 11 29280315 29280336 mRNA hsa-let-7b ADAP2 miRanda miRanda
6116 chr17 29280326 29280326 1 + G A BLCA 29280323 + 29280303 29280343 41 CAGCTCGTGCCATTCCTCACCAGGAACTACCTCAAACAAGG CAGCTCGTGCCATTCCTCACCAGAAACTACCTCAAACAAGG < 41bp 0.751023066628721 0.520570189711054 0.8073315 0.48907277 prediction 0.460905753835334 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29280323 chr17:29280326 synonymous SNV . 0 24 hm5C_associated_SNPs_74694 0 0 0 11 29280315 29280336 mRNA hsa-let-7c ADAP2 miRanda miRanda
6117 chr17 29280326 29280326 1 + G A BLCA 29280323 + 29280303 29280343 41 CAGCTCGTGCCATTCCTCACCAGGAACTACCTCAAACAAGG CAGCTCGTGCCATTCCTCACCAGAAACTACCTCAAACAAGG < 41bp 0.751023066628721 0.520570189711054 0.8073315 0.48907277 prediction 0.460905753835334 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29280323 chr17:29280326 synonymous SNV . 0 24 hm5C_associated_SNPs_74694 0 0 0 11 29280315 29280336 mRNA hsa-let-7d ADAP2 miRanda miRanda
6118 chr17 29280326 29280326 1 + G A BLCA 29280323 + 29280303 29280343 41 CAGCTCGTGCCATTCCTCACCAGGAACTACCTCAAACAAGG CAGCTCGTGCCATTCCTCACCAGAAACTACCTCAAACAAGG < 41bp 0.751023066628721 0.520570189711054 0.8073315 0.48907277 prediction 0.460905753835334 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29280323 chr17:29280326 synonymous SNV . 0 24 hm5C_associated_SNPs_74694 0 0 0 11 29280315 29280336 mRNA hsa-let-7e ADAP2 miRanda miRanda
6119 chr17 29280326 29280326 1 + G A BLCA 29280323 + 29280303 29280343 41 CAGCTCGTGCCATTCCTCACCAGGAACTACCTCAAACAAGG CAGCTCGTGCCATTCCTCACCAGAAACTACCTCAAACAAGG < 41bp 0.751023066628721 0.520570189711054 0.8073315 0.48907277 prediction 0.460905753835334 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29280323 chr17:29280326 synonymous SNV . 0 24 hm5C_associated_SNPs_74694 0 0 0 11 29280315 29280336 mRNA hsa-let-7f ADAP2 miRanda miRanda
6120 chr17 29280326 29280326 1 + G A BLCA 29280323 + 29280303 29280343 41 CAGCTCGTGCCATTCCTCACCAGGAACTACCTCAAACAAGG CAGCTCGTGCCATTCCTCACCAGAAACTACCTCAAACAAGG < 41bp 0.751023066628721 0.520570189711054 0.8073315 0.48907277 prediction 0.460905753835334 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29280323 chr17:29280326 synonymous SNV . 0 24 hm5C_associated_SNPs_74694 0 0 0 11 29280315 29280336 mRNA hsa-miR-98 ADAP2 miRanda miRanda
6121 chr17 29280326 29280326 1 + G A BLCA 29280323 + 29280303 29280343 41 CAGCTCGTGCCATTCCTCACCAGGAACTACCTCAAACAAGG CAGCTCGTGCCATTCCTCACCAGAAACTACCTCAAACAAGG < 41bp 0.751023066628721 0.520570189711054 0.8073315 0.48907277 prediction 0.460905753835334 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29280323 chr17:29280326 synonymous SNV . 0 24 hm5C_associated_SNPs_74694 0 0 0 11 29280315 29280335 mRNA hsa-miR-196a ADAP2 miRanda miRanda
6122 chr17 29280326 29280326 1 + G A BLCA 29280323 + 29280303 29280343 41 CAGCTCGTGCCATTCCTCACCAGGAACTACCTCAAACAAGG CAGCTCGTGCCATTCCTCACCAGAAACTACCTCAAACAAGG < 41bp 0.751023066628721 0.520570189711054 0.8073315 0.48907277 prediction 0.460905753835334 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29280323 chr17:29280326 synonymous SNV . 0 24 hm5C_associated_SNPs_74694 0 0 0 11 29280315 29280336 mRNA hsa-let-7g ADAP2 miRanda miRanda
6123 chr17 29280326 29280326 1 + G A BLCA 29280323 + 29280303 29280343 41 CAGCTCGTGCCATTCCTCACCAGGAACTACCTCAAACAAGG CAGCTCGTGCCATTCCTCACCAGAAACTACCTCAAACAAGG < 41bp 0.751023066628721 0.520570189711054 0.8073315 0.48907277 prediction 0.460905753835334 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29280323 chr17:29280326 synonymous SNV . 0 24 hm5C_associated_SNPs_74694 0 0 0 11 29280315 29280336 mRNA hsa-let-7i ADAP2 miRanda miRanda
6124 chr17 29280326 29280326 1 + G A BLCA 29280323 + 29280303 29280343 41 CAGCTCGTGCCATTCCTCACCAGGAACTACCTCAAACAAGG CAGCTCGTGCCATTCCTCACCAGAAACTACCTCAAACAAGG < 41bp 0.751023066628721 0.520570189711054 0.8073315 0.48907277 prediction 0.460905753835334 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29280323 chr17:29280326 synonymous SNV . 0 24 hm5C_associated_SNPs_74694 0 0 0 11 29280315 29280335 mRNA hsa-miR-196b ADAP2 miRanda miRanda
6125 chr17 6920597 6920597 1 + G A SKCM 6920594 + 6920574 6920614 41 AGACAGCCTGACCCTGGATTCTGGCCTTCTCATGACCTCTG AGACAGCCTGACCCTGGATTCTGACCTTCTCATGACCTCTG < 41bp 0.732981743173708 0.502580084323345 0.079215765 0.06359869 prediction 0.460803317700726 Functional Loss - C17orf49 ENSG00000161939;ENSG00000258315 CDS Human other chr17:6920594 chr17:6920597 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_74727 0 0 1 2 6920585 6920609 mRNA hsa-miR-376a C17orf49 miRanda miRanda
6126 chr17 6920597 6920597 1 + G A SKCM 6920594 + 6920574 6920614 41 AGACAGCCTGACCCTGGATTCTGGCCTTCTCATGACCTCTG AGACAGCCTGACCCTGGATTCTGACCTTCTCATGACCTCTG < 41bp 0.732981743173708 0.502580084323345 0.079215765 0.06359869 prediction 0.460803317700726 Functional Loss - C17orf49 ENSG00000161939;ENSG00000258315 CDS Human other chr17:6920594 chr17:6920597 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_74727 0 0 1 2 6920585 6920609 mRNA hsa-miR-376b C17orf49 miRanda miRanda
6127 chr15 64448304 64448304 1 + C T UCEC 64448302 + 64448282 64448322 41 CACATCCTTCAGGGGTTTATCCCGGCTGTCTGTCTTGGTGC CACATCCTTCAGGGGTTTATCCTGGCTGTCTGTCTTGGTGC < 41bp 0.730413979248322 0.500023193723198 0.9438845 0.9429765 prediction 0.460781571050247 Functional Loss - PPIB ENSG00000166794 CDS Human protein_coding chr15:64448302 chr15:64448304 nonsynonymous SNV 0.991 2 23 hm5C_associated_SNPs_74736 1 0 0 3 64448300 64448324 mRNA hsa-miR-29a SNX22 miRanda miRanda
6128 chr15 64448304 64448304 1 + C T UCEC 64448302 + 64448282 64448322 41 CACATCCTTCAGGGGTTTATCCCGGCTGTCTGTCTTGGTGC CACATCCTTCAGGGGTTTATCCTGGCTGTCTGTCTTGGTGC < 41bp 0.730413979248322 0.500023193723198 0.9438845 0.9429765 prediction 0.460781571050247 Functional Loss - PPIB ENSG00000166794 CDS Human protein_coding chr15:64448302 chr15:64448304 nonsynonymous SNV 0.991 2 23 hm5C_associated_SNPs_74736 1 0 0 3 64448303 64448324 mRNA hsa-miR-29b SNX22 miRanda miRanda
6129 chr15 64448304 64448304 1 + C T UCEC 64448302 + 64448282 64448322 41 CACATCCTTCAGGGGTTTATCCCGGCTGTCTGTCTTGGTGC CACATCCTTCAGGGGTTTATCCTGGCTGTCTGTCTTGGTGC < 41bp 0.730413979248322 0.500023193723198 0.9438845 0.9429765 prediction 0.460781571050247 Functional Loss - PPIB ENSG00000166794 CDS Human protein_coding chr15:64448302 chr15:64448304 nonsynonymous SNV 0.991 2 23 hm5C_associated_SNPs_74736 1 0 0 3 64448300 64448324 mRNA hsa-miR-29c SNX22 miRanda miRanda
6130 chr7 65618198 65618198 1 + G A rs62465483 65618195 + 65618175 65618215 41 AGCACTTTGGGAGGGCAAGGCAGGCGGATCACCTGAGGTCA AGCACTTTGGGAGGGCAAGGCAGACGGATCACCTGAGGTCA < 41bp 0.730367863092352 0.488002191302085 0.9052894 0.89131665 prediction 0.460735726184704 Functional Loss - CRCP ENSG00000234185 ncRNA_intronic Human antisense chr7:65618195 chr7:65618198 . . 0 24 hm5C_associated_SNPs_74750 0 0 0 1 65618189 65618210 mRNA hsa-miR-125a-3p CRCP miRanda miRanda
6131 chr13 28006937 28006937 1 + C T UCEC 28006935 + 28006915 28006955 41 TGAAACGACATGCCAAGGCCCACGAGGGTGTGTACGGATAG TGAAACGACATGCCAAGGCCCATGAGGGTGTGTACGGATAG < 41bp 0.817570987740487 0.587203466544764 0.26658767 0.20297164 prediction 0.460735042391447 Functional Loss - GTF3A ENSG00000122034 CDS Human protein_coding chr13:28006935 chr13:28006937 synonymous SNV . 0 23 hm5C_associated_SNPs_74751 0 0 1 1 28006920 28006941 mRNA hsa-miR-330-5p GTF3A miRanda miRanda
6132 chr16 66514796 66514796 1 + G A COAD 66514793 + 66514773 66514813 41 AGGGCTCACCCACCCCAACCCGGGCCCCAGCCTCTGGCCCA AGGGCTCACCCACCCCAACCCGGACCCCAGCCTCTGGCCCA < 41bp 0.77487985310436 0.544527340282918 0.89795935 0.36492413 prediction 0.460705025642884 Functional Loss - BEAN1 ENSG00000166546 CDS Human protein_coding chr16:66514793 chr16:66514796 nonsynonymous SNV 0.011 1 24 hm5C_associated_SNPs_74762 0 0 0 1 66514796 66514817 mRNA hsa-miR-330-5p BEAN miRanda miRanda
6133 chr10 38654418 38654418 1 + G A GBM 38654415 + 38654395 38654435 41 GACAATCCATCTCAGCTCATCTGGACATCATCTCGCAATGC GACAATCCATCTCAGCTCATCTGAACATCATCTCGCAATGC < 41bp 0.735809783972309 0.505537640728503 0.061829656 0.025867075 prediction 0.460544286487612 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38654415 chr10:38654418 . . 0 24 hm5C_associated_SNPs_74819 0 0 1 3 38654417 38654437 mRNA hsa-miR-33a HSD17B7P2 miRanda miRanda
6134 chr10 38654418 38654418 1 + G A GBM 38654415 + 38654395 38654435 41 GACAATCCATCTCAGCTCATCTGGACATCATCTCGCAATGC GACAATCCATCTCAGCTCATCTGAACATCATCTCGCAATGC < 41bp 0.735809783972309 0.505537640728503 0.061829656 0.025867075 prediction 0.460544286487612 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38654415 chr10:38654418 . . 0 24 hm5C_associated_SNPs_74819 0 0 1 3 38654407 38654429 mRNA hsa-miR-143 HSD17B7P2 miRanda miRanda
6135 chr10 38654418 38654418 1 + G A GBM 38654415 + 38654395 38654435 41 GACAATCCATCTCAGCTCATCTGGACATCATCTCGCAATGC GACAATCCATCTCAGCTCATCTGAACATCATCTCGCAATGC < 41bp 0.735809783972309 0.505537640728503 0.061829656 0.025867075 prediction 0.460544286487612 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38654415 chr10:38654418 . . 0 24 hm5C_associated_SNPs_74819 0 0 1 3 38654418 38654437 mRNA hsa-miR-33b HSD17B7P2 miRanda miRanda
6136 chr8 10555178 10555178 1 + C T SKCM 10555176 + 10555156 10555196 41 GATTACCGGGGCCATTTCAACACCACCCACCTGCTGGCCCT GATTACCGGGGCCATTTCAACATCACCCACCTGCTGGCCCT < 41bp 0.828721621036288 0.598466309148483 0.16109395 0.093437076 prediction 0.460510623775609 Functional Loss - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10555176 chr8:10555178 nonsynonymous SNV 0.409 0 23 hm5C_associated_SNPs_74831 0 0 0 2 10555171 10555192 mRNA hsa-miR-214 C8orf74 miRanda miRanda
6137 chr8 10555178 10555178 1 + C T SKCM 10555176 + 10555156 10555196 41 GATTACCGGGGCCATTTCAACACCACCCACCTGCTGGCCCT GATTACCGGGGCCATTTCAACATCACCCACCTGCTGGCCCT < 41bp 0.828721621036288 0.598466309148483 0.16109395 0.093437076 prediction 0.460510623775609 Functional Loss - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10555176 chr8:10555178 nonsynonymous SNV 0.409 0 23 hm5C_associated_SNPs_74831 0 0 0 2 10555158 10555178 mRNA hsa-miR-653 C8orf74 miRanda miRanda
6138 chrX 100743995 100743995 1 + G T SARC 100743993 + 100743973 100744013 41 ACTGAGGTCAAGGCCAAAGCCAGGGAAGTGGCCATGAAAGA ACTGAGGTCAAGGCCAAAGCCATGGAAGTGGCCATGAAAGA < 41bp 0.730202410272764 0.399984784024011 0.8296342 0.2545953 prediction 0.460404820545529 Functional Loss - ARMCX4 ENSG00000196440 CDS Human protein_coding chrX:100743993 chrX:100743995 nonsynonymous SNV 0.098 1 23 hm5C_associated_SNPs_74866 0 0 0 1 100743984 100744007 mRNA hsa-miR-328 ARMCX4 miRanda miRanda
6139 chr1 149755777 149755777 1 + G T UCEC 149755775 + 149755755 149755795 41 CAGGTGCCAGAGAGGTCTCTCAGGGCGAAGTGACCCCATAC CAGGTGCCAGAGAGGTCTCTCATGGCGAAGTGACCCCATAC < 41bp 0.902442095107141 0.672239828932922 0.9470671 0.9116808 prediction 0.460404532348438 Functional Loss - FCGR1A ENSG00000150337 CDS Human protein_coding chr1:149755775 chr1:149755777 nonsynonymous SNV 0.256 1 23 hm5C_associated_SNPs_74867 0 0 0 2 149755758 149755780 mRNA hsa-miR-125b FCGR1A miRanda miRanda
6140 chr1 149755777 149755777 1 + G T UCEC 149755775 + 149755755 149755795 41 CAGGTGCCAGAGAGGTCTCTCAGGGCGAAGTGACCCCATAC CAGGTGCCAGAGAGGTCTCTCATGGCGAAGTGACCCCATAC < 41bp 0.902442095107141 0.672239828932922 0.9470671 0.9116808 prediction 0.460404532348438 Functional Loss - FCGR1A ENSG00000150337 CDS Human protein_coding chr1:149755775 chr1:149755777 nonsynonymous SNV 0.256 1 23 hm5C_associated_SNPs_74867 0 0 0 2 149755752 149755780 mRNA hsa-miR-125a-5p FCGR1A miRanda miRanda
6141 chr12 104732944 104732944 1 + G A UCEC 104732941 + 104732921 104732961 41 GTGTTGTGGGCTTTCACGTACTGGGTCCAAATGCTGGAGAA GTGTTGTGGGCTTTCACGTACTGAGTCCAAATGCTGGAGAA < 41bp 0.734271534335044 0.504070585039083 0.40489766 0.30400223 prediction 0.460401898591922 Functional Loss - TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104732941 chr12:104732944 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_74868 0 0 1 1 104732938 104732958 mRNA hsa-miR-338-3p TXNRD1 miRanda miRanda
6142 chr3 186793702 186793702 1 + G A rs2239611 186793699 + 186793679 186793719 41 TCCAGCCTGCTCCTTTTACTCTAGGGGCCTCTGTCAGCAAG TCCAGCCTGCTCCTTTTACTCTAAGGGCCTCTGTCAGCAAG < 41bp 0.757168743867681 0.527211857892974 0.8949256 0.39561272 prediction 0.459913771949415 Functional Loss - ST6GAL1 ENSG00000073849 UTR3 Human protein_coding chr3:186793699 chr3:186793702 . . 0 24 hm5C_associated_SNPs_75031 0 0 1 1 186793702 186793722 mRNA hsa-miR-431 ST6GAL1 miRanda miRanda
6143 chr9 35607978 35607978 1 + T C rs7018639 35607977 + 35607957 35607997 41 TGAGCTCATCGCCCGAGTACCTGCAGACCCTGACTACCTAC TGAGCTCATCGCCCGAGTACCCGCAGACCCTGACTACCTAC < 41bp 0.729933292810456 0.465009862558481 0.5537188 0.15969318 prediction 0.459866585620911 Functional Loss - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35607977 chr9:35607978 synonymous SNV . 0 22 hm5C_associated_SNPs_75047 0 0 1 2 35607977 35607996 mRNA hsa-miR-196a TESK1 miRanda miRanda
6144 chr9 35607978 35607978 1 + T C rs7018639 35607977 + 35607957 35607997 41 TGAGCTCATCGCCCGAGTACCTGCAGACCCTGACTACCTAC TGAGCTCATCGCCCGAGTACCCGCAGACCCTGACTACCTAC < 41bp 0.729933292810456 0.465009862558481 0.5537188 0.15969318 prediction 0.459866585620911 Functional Loss - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35607977 chr9:35607978 synonymous SNV . 0 22 hm5C_associated_SNPs_75047 0 0 1 2 35607975 35607996 mRNA hsa-miR-196b TESK1 miRanda miRanda
6145 chr16 31121625 31121625 1 + G A BRCA 31121622 + 31121602 31121642 41 CCCTCTTGGCAGAGGGCCTACGTGAGAGCCGGAAGCACATA CCCTCTTGGCAGAGGGCCTACGTAAGAGCCGGAAGCACATA < 41bp 0.757768321207504 0.527855025384168 0.41968346 0.33681327 prediction 0.459826591646673 Functional Loss - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121622 chr16:31121625 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_75058 0 0 1 3 31121618 31121641 mRNA hsa-miR-218 BCKDK miRanda miRanda
6146 chr16 31121625 31121625 1 + G A BRCA 31121622 + 31121602 31121642 41 CCCTCTTGGCAGAGGGCCTACGTGAGAGCCGGAAGCACATA CCCTCTTGGCAGAGGGCCTACGTAAGAGCCGGAAGCACATA < 41bp 0.757768321207504 0.527855025384168 0.41968346 0.33681327 prediction 0.459826591646673 Functional Loss - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121622 chr16:31121625 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_75058 0 0 1 3 31121619 31121642 mRNA hsa-miR-135a BCKDK miRanda miRanda
6147 chr16 31121625 31121625 1 + G A BRCA 31121622 + 31121602 31121642 41 CCCTCTTGGCAGAGGGCCTACGTGAGAGCCGGAAGCACATA CCCTCTTGGCAGAGGGCCTACGTAAGAGCCGGAAGCACATA < 41bp 0.757768321207504 0.527855025384168 0.41968346 0.33681327 prediction 0.459826591646673 Functional Loss - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121622 chr16:31121625 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_75058 0 0 1 3 31121619 31121642 mRNA hsa-miR-135b BCKDK miRanda miRanda
6148 chr4 25335045 25335045 1 + C T CESC 25335043 + 25335023 25335063 41 TGGTAGACTTACTTTCTGCCCTCGGATTCAGAAGAGTACTG TGGTAGACTTACTTTCTGCCCTTGGATTCAGAAGAGTACTG < 41bp 0.729838728100759 0.444603399281704 0.03952548 0.025520533 prediction 0.459677456201519 Functional Loss - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25335043 chr4:25335045 synonymous SNV . 0 23 hm5C_associated_SNPs_75112 0 0 1 1 25335045 25335065 mRNA hsa-miR-101 ZCCHC4 miRanda miRanda
6149 chr4 25335046 25335046 1 + G A UCEC 25335043 + 25335023 25335063 41 TGGTAGACTTACTTTCTGCCCTCGGATTCAGAAGAGTACTG TGGTAGACTTACTTTCTGCCCTCAGATTCAGAAGAGTACTG < 41bp 0.729838728100759 0.494937140936082 0.03952548 0.021920472 prediction 0.459677456201519 Functional Loss - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25335043 chr4:25335046 nonsynonymous SNV 0.569 3 24 hm5C_associated_SNPs_75113 0 0 1 1 25335045 25335065 mRNA hsa-miR-101 ZCCHC4 miRanda miRanda
6150 chr2 177054586 177054586 1 + A T COAD 177054582 + 177054562 177054602 41 AGCCCCTCCAGCGCGATCCGCACGAATTTCAGCACCAAGCA AGCCCCTCCAGCGCGATCCGCACGTATTTCAGCACCAAGCA < 41bp 0.886528701493794 0.656736043965622 0.09755334 0.067546785 prediction 0.459585315056344 Functional Loss - HOXD1 ENSG00000128645 CDS Human protein_coding chr2:177054582 chr2:177054586 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_75144 0 0 1 1 177054579 177054602 mRNA hsa-miR-138 HOXD1 miRanda miRanda
6151 chr4 146479235 146479235 1 + A C rs28397904 146479231 + 146479211 146479251 41 GTTGGATTCAGAAATTTAAACAAAAAAAAAAAAAAACACAC GTTGGATTCAGAAATTTAAACAAACAAAAAAAAAAACACAC < 41bp 0.72977506596847 0.34837220966466 0.93657327 0.92746806 prediction 0.45955013193694 Functional Loss - SMAD1 ENSG00000170365 downstream Human protein_coding chr4:146479231 chr4:146479235 . . 0 25 hm5C_associated_SNPs_75156 0 0 0 1 146479217 146479237 mRNA hsa-miR-129-5p SMAD1 miRanda miRanda
6152 chr15 91832773 91832773 1 + A C ESCA 91832769 + 91832749 91832789 41 AGGTGGCTCCATGCTAATCTCTGCAGTCTGCTGCTTCTTCC AGGTGGCTCCATGCTAATCTCTGCCGTCTGCTGCTTCTTCC < 41bp 0.729759915885284 0.306969172410291 0.5674782 0.368135 prediction 0.459519831770568 Functional Loss - SV2B ENSG00000185518 CDS Human protein_coding chr15:91832769 chr15:91832773 synonymous SNV . 0 25 hm5C_associated_SNPs_75173 0 0 0 6 91832763 91832784 mRNA hsa-miR-15a SV2B miRanda miRanda
6153 chr15 91832773 91832773 1 + A C ESCA 91832769 + 91832749 91832789 41 AGGTGGCTCCATGCTAATCTCTGCAGTCTGCTGCTTCTTCC AGGTGGCTCCATGCTAATCTCTGCCGTCTGCTGCTTCTTCC < 41bp 0.729759915885284 0.306969172410291 0.5674782 0.368135 prediction 0.459519831770568 Functional Loss - SV2B ENSG00000185518 CDS Human protein_coding chr15:91832769 chr15:91832773 synonymous SNV . 0 25 hm5C_associated_SNPs_75173 0 0 0 6 91832760 91832784 mRNA hsa-miR-16 SV2B miRanda miRanda
6154 chr15 91832773 91832773 1 + A C ESCA 91832769 + 91832749 91832789 41 AGGTGGCTCCATGCTAATCTCTGCAGTCTGCTGCTTCTTCC AGGTGGCTCCATGCTAATCTCTGCCGTCTGCTGCTTCTTCC < 41bp 0.729759915885284 0.306969172410291 0.5674782 0.368135 prediction 0.459519831770568 Functional Loss - SV2B ENSG00000185518 CDS Human protein_coding chr15:91832769 chr15:91832773 synonymous SNV . 0 25 hm5C_associated_SNPs_75173 0 0 0 6 91832761 91832784 mRNA hsa-miR-15b SV2B miRanda miRanda
6155 chr15 91832773 91832773 1 + A C ESCA 91832769 + 91832749 91832789 41 AGGTGGCTCCATGCTAATCTCTGCAGTCTGCTGCTTCTTCC AGGTGGCTCCATGCTAATCTCTGCCGTCTGCTGCTTCTTCC < 41bp 0.729759915885284 0.306969172410291 0.5674782 0.368135 prediction 0.459519831770568 Functional Loss - SV2B ENSG00000185518 CDS Human protein_coding chr15:91832769 chr15:91832773 synonymous SNV . 0 25 hm5C_associated_SNPs_75173 0 0 0 6 91832761 91832784 mRNA hsa-miR-195 SV2B miRanda miRanda
6156 chr15 91832773 91832773 1 + A C ESCA 91832769 + 91832749 91832789 41 AGGTGGCTCCATGCTAATCTCTGCAGTCTGCTGCTTCTTCC AGGTGGCTCCATGCTAATCTCTGCCGTCTGCTGCTTCTTCC < 41bp 0.729759915885284 0.306969172410291 0.5674782 0.368135 prediction 0.459519831770568 Functional Loss - SV2B ENSG00000185518 CDS Human protein_coding chr15:91832769 chr15:91832773 synonymous SNV . 0 25 hm5C_associated_SNPs_75173 0 0 0 6 91832761 91832784 mRNA hsa-miR-424 SV2B miRanda miRanda
6157 chr15 91832773 91832773 1 + A C ESCA 91832769 + 91832749 91832789 41 AGGTGGCTCCATGCTAATCTCTGCAGTCTGCTGCTTCTTCC AGGTGGCTCCATGCTAATCTCTGCCGTCTGCTGCTTCTTCC < 41bp 0.729759915885284 0.306969172410291 0.5674782 0.368135 prediction 0.459519831770568 Functional Loss - SV2B ENSG00000185518 CDS Human protein_coding chr15:91832769 chr15:91832773 synonymous SNV . 0 25 hm5C_associated_SNPs_75173 0 0 0 6 91832764 91832784 mRNA hsa-miR-497 SV2B miRanda miRanda
6158 chr16 86589991 86589991 1 + A T rs369392380 86589987 + 86589967 86590007 41 CCCGCCTCCTACGCAGGAGGCAACAGAGGCTCAGACATGTT CCCGCCTCCTACGCAGGAGGCAACTGAGGCTCAGACATGTT < 41bp 0.729733887080966 0.443216968519004 0.2722715 0.23537022 prediction 0.459467774161932 Functional Loss - FLJ30679 ENSG00000103248;ENSG00000260944 intergenic Human other chr16:86589987 chr16:86589991 . . 0 25 hm5C_associated_SNPs_75189 0 0 0 1 86589987 86590008 mRNA hsa-miR-132 FLJ30679 miRanda miRanda
6159 chr17 58740467 58740467 1 + C T HNSC 58740465 + 58740445 58740485 41 AGAGGTTTCAGCTGAGATAGCTCGAGAGAATGTCCAAGGTG AGAGGTTTCAGCTGAGATAGCTTGAGAGAATGTCCAAGGTG < 41bp 0.821904679017007 0.592271424135679 0.23471135 0.17372611 prediction 0.459266509762656 Functional Loss - PPM1D ENSG00000170836 CDS Human protein_coding chr17:58740465 chr17:58740467 stopgain 0.965 0 23 hm5C_associated_SNPs_75270 0 0 1 1 58740467 58740490 mRNA hsa-miR-329 PPM1D miRanda miRanda
6160 chr19 4769731 4769731 1 + G A rs376626440 4769728 + 4769708 4769748 41 GGGCTCAGGACAGTTCCCAGCGGGCTCCGTTTCGTCTCCAG GGGCTCAGGACAGTTCCCAGCGGACTCCGTTTCGTCTCCAG < 41bp 0.77709854049807 0.547471767471385 0.9241444 0.8592676 prediction 0.459253546053369 Functional Loss - MIR7-3HG ENSG00000176840 ncRNA_exonic Human lincRNA chr19:4769728 chr19:4769731 . . 0 24 hm5C_associated_SNPs_75275 0 0 0 1 4769724 4769747 mRNA hsa-miR-185 C19orf30 miRanda miRanda
6161 chr6 42658866 42658866 1 + G T COAD 42658864 + 42658844 42658884 41 CAGAGGAAATTGGACATGCACAGGAAGCCAATCAGACACTG CAGAGGAAATTGGACATGCACATGAAGCCAATCAGACACTG < 41bp 0.729611691010313 0.425161094832136 0.63207823 0.11442295 prediction 0.459223382020625 Functional Loss - UBR2 ENSG00000024048 CDS Human protein_coding chr6:42658864 chr6:42658866 nonsynonymous SNV 0.956 3 23 hm5C_associated_SNPs_75287 0 0 1 2 42658861 42658886 mRNA hsa-miR-199a-5p UBR2 miRanda miRanda
6162 chr6 42658866 42658866 1 + G T COAD 42658864 + 42658844 42658884 41 CAGAGGAAATTGGACATGCACAGGAAGCCAATCAGACACTG CAGAGGAAATTGGACATGCACATGAAGCCAATCAGACACTG < 41bp 0.729611691010313 0.425161094832136 0.63207823 0.11442295 prediction 0.459223382020625 Functional Loss - UBR2 ENSG00000024048 CDS Human protein_coding chr6:42658864 chr6:42658866 nonsynonymous SNV 0.956 3 23 hm5C_associated_SNPs_75287 0 0 1 2 42658861 42658886 mRNA hsa-miR-199b-5p UBR2 miRanda miRanda
6163 chr11 6265516 6265516 1 + G T LUAD 6265514 + 6265494 6265534 41 GCATTGAACGGCTGGAGTGGCAGACTCGAGAGTGGCCAATG GCATTGAACGGCTGGAGTGGCATACTCGAGAGTGGCCAATG < 41bp 0.729533948240649 0.447064447537647 0.8443066 0.4434034 prediction 0.459067896481298 Functional Loss - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6265514 chr11:6265516 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_75346 0 0 0 2 6265510 6265532 mRNA hsa-miR-328 CNGA4 miRanda miRanda
6164 chr11 6265516 6265516 1 + G T LUAD 6265514 + 6265494 6265534 41 GCATTGAACGGCTGGAGTGGCAGACTCGAGAGTGGCCAATG GCATTGAACGGCTGGAGTGGCATACTCGAGAGTGGCCAATG < 41bp 0.729533948240649 0.447064447537647 0.8443066 0.4434034 prediction 0.459067896481298 Functional Loss - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6265514 chr11:6265516 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_75346 0 0 0 2 6265500 6265519 mRNA hsa-miR-346 CNGA4 miRanda miRanda
6165 chr17 42226180 42226180 1 + C T LUAD 42226178 + 42226158 42226198 41 GACTAGCTCTGGATTATTTCCTCGGATACCCTTACAACCGC GACTAGCTCTGGATTATTTCCTTGGATACCCTTACAACCGC < 41bp 0.820255653363045 0.590721861645419 0.45075557 0.20412472 prediction 0.459067583435252 Functional Loss - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42226178 chr17:42226180 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_75348 0 0 1 1 42226159 42226181 mRNA hsa-miR-539 C17orf53 miRanda miRanda
6166 chr14 38170629 38170629 1 + G A UCEC 38170626 + 38170606 38170646 41 TGTTGACTTGCGCCTGGCTTCTCGAGTGTATCACACTGCTA TGTTGACTTGCGCCTGGCTTCTCAAGTGTATCACACTGCTA < 41bp 0.73328280633625 0.503805726420887 0.8825789 0.6444057 prediction 0.458954159830726 Functional Loss - TTC6 ENSG00000139865 CDS Human protein_coding chr14:38170626 chr14:38170629 nonsynonymous SNV 0.990 2 24 hm5C_associated_SNPs_75390 0 0 1 1 38170622 38170644 mRNA hsa-miR-125a-3p C14orf25 miRanda miRanda
6167 chr10 75673453 75673453 1 + C T SKCM 75673451 + 75673431 75673471 41 AGGCACCGGGGGGGCTCTGTCACCTACGTGTGTGGAGGCAG AGGCACCGGGGGGGCTCTGTCATCTACGTGTGTGGAGGCAG < 41bp 0.83305430596861 0.603603771215579 0.40101847 0.44288337 prediction 0.458901069506062 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75673451 chr10:75673453 nonsynonymous SNV 0.044 1 23 hm5C_associated_SNPs_75408 0 0 0 1 75673433 75673454 mRNA hsa-miR-542-3p PLAU miRanda miRanda
6168 chr7 64530112 64530112 1 + G T STAD 64530110 + 64530090 64530130 41 TCCTGACTGCTTGGGACATGCAGGACTTGTATATGAGTATA TCCTGACTGCTTGGGACATGCATGACTTGTATATGAGTATA < 41bp 0.892344351690524 0.662931493762911 0.53137904 0.119674414 prediction 0.458825715855224 Functional Loss - CCT6P3 ENSG00000234585 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64530110 chr7:64530112 . . 0 23 hm5C_associated_SNPs_75427 0 0 0 2 64530099 64530122 mRNA hsa-miR-381 CCT6P3 miRanda miRanda
6169 chr7 64530112 64530112 1 + G T STAD 64530110 + 64530090 64530130 41 TCCTGACTGCTTGGGACATGCAGGACTTGTATATGAGTATA TCCTGACTGCTTGGGACATGCATGACTTGTATATGAGTATA < 41bp 0.892344351690524 0.662931493762911 0.53137904 0.119674414 prediction 0.458825715855224 Functional Loss - CCT6P3 ENSG00000234585 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64530110 chr7:64530112 . . 0 23 hm5C_associated_SNPs_75427 0 0 0 2 64530101 64530122 mRNA hsa-miR-300 CCT6P3 miRanda miRanda
6170 chr5 109220371 109220371 1 + C T rs17162400 109220369 + 109220349 109220389 41 CCTGAGGGTCCTGAGCGCCACTCGGCCATTGGGTCGGATCA CCTGAGGGTCCTGAGCGCCACTTGGCCATTGGGTCGGATCA < 41bp 0.756688967043196 0.527284682508461 0.2945324 0.14084607 prediction 0.458808569069468 Functional Loss - LINC01848 ENSG00000253224 ncRNA_exonic Human processed_pseudogene chr5:109220369 chr5:109220371 . . 0 23 hm5C_associated_SNPs_75432 0 0 0 2 109220363 109220385 lncRNA hsa-miR-551a LINC01848 miRanda starBase2
6171 chr5 109220371 109220371 1 + C T rs17162400 109220369 + 109220349 109220389 41 CCTGAGGGTCCTGAGCGCCACTCGGCCATTGGGTCGGATCA CCTGAGGGTCCTGAGCGCCACTTGGCCATTGGGTCGGATCA < 41bp 0.756688967043196 0.527284682508461 0.2945324 0.14084607 prediction 0.458808569069468 Functional Loss - LINC01848 ENSG00000253224 ncRNA_exonic Human processed_pseudogene chr5:109220369 chr5:109220371 . . 0 23 hm5C_associated_SNPs_75432 0 0 0 2 109220365 109220385 lncRNA hsa-miR-551b-3p LINC01848 miRanda starBase2
6172 chrX 18912384 18912384 1 + C T UCEC 18912382 + 18912362 18912402 41 TGGTCCACGTGGATGATGCCCCCGATGCTGGTCATCTCCGT TGGTCCACGTGGATGATGCCCCTGATGCTGGTCATCTCCGT < 41bp 0.809267686433293 0.579903880274109 0.06471512 0.18341506 prediction 0.458727612318368 Functional Loss - PHKA2 ENSG00000044446 CDS Human protein_coding chrX:18912382 chrX:18912384 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_75465 0 0 0 1 18912372 18912393 mRNA hsa-miR-338-3p LOC100132163 miRanda miRanda
6173 chr12 54383620 54383620 1 + C T rs186245023 54383618 + 54383598 54383638 41 AACCAGAGAGGGTCTGTAATCTCGCAGAGCACAGGCAGAAT AACCAGAGAGGGTCTGTAATCTTGCAGAGCACAGGCAGAAT < 41bp 0.729340929811191 0.479503398688666 0.31146777 0.24021566 prediction 0.458681859622383 Functional Loss - HOXC10 ENSG00000180818 UTR3 Human protein_coding chr12:54383618 chr12:54383620 . . 0 23 hm5C_associated_SNPs_75476 0 0 1 1 54383619 54383643 mRNA hsa-miR-543 HOXC10 miRanda miRanda
6174 chr3 9739418 9739418 1 + G A UCEC 9739415 + 9739395 9739435 41 ATCAGTGGACCATCCCCTGCCCGGATCCTCTCTCTCCACAG ATCAGTGGACCATCCCCTGCCCGAATCCTCTCTCTCCACAG < 41bp 0.759832151564386 0.530499159347213 0.21282509 0.02849847 prediction 0.458665984434347 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9739415 chr3:9739418 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_75483 0 0 1 1 9739411 9739432 mRNA hsa-miR-185 MTMR14 miRanda miRanda
6175 chr17 18638563 18638563 1 + C T GBM 18638561 + 18638541 18638581 41 AAGCTGGCCCTTTCTGGAGGCTCGGGGTCTATATTGACTTC AAGCTGGCCCTTTCTGGAGGCTTGGGGTCTATATTGACTTC < 41bp 0.729216537977433 0.449847941428254 0.5161221 0.58298975 prediction 0.458433075954865 Functional Loss - TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18638561 chr17:18638563 synonymous SNV . 0 23 hm5C_associated_SNPs_75568 0 0 1 1 18638545 18638566 mRNA hsa-miR-615-3p TRIM16L miRanda miRanda
6176 chr3 122842988 122842988 1 + A C BRCA 122842987 + 122842967 122843007 41 TACAGCGTGCGCGGCTTCCCCACCATCTGCTATTTTGAGTA TACAGCGTGCGCGGCTTCCCCCCCATCTGCTATTTTGAGTA < 41bp 0.810664923838373 0.581516958398587 0.23416457 0.100320816 prediction 0.45829593087957 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122842987 chr3:122842988 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_75622 0 0 1 1 122842969 122842990 mRNA hsa-miR-491-5p PDIA5 miRanda miRanda
6177 chr1 205241039 205241039 1 + G A COAD 205241036 + 205241016 205241056 41 GAGGGCGTGGAGAATGCCAACGCGCGGGCGCTGCTGGGCAA GAGGGCGTGGAGAATGCCAACGCACGGGCGCTGCTGGGCAA < 41bp 0.729096203525779 0.49098265440371 0.28521597 0.060505718 prediction 0.458192407051557 Functional Loss - TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205241036 chr1:205241039 synonymous SNV . 0 24 hm5C_associated_SNPs_75660 0 0 0 1 205241029 205241051 mRNA hsa-miR-503 TMCC2 miRanda miRanda
6178 chr6 105526436 105526436 1 + G T LUAD 105526434 + 105526414 105526454 41 CACAGCCACCCGCGAGTTCTCAGGGAAGACAGGAAGCAGAA CACAGCCACCCGCGAGTTCTCATGGAAGACAGGAAGCAGAA < 41bp 0.899765772628608 0.670698763798136 0.9499831 0.8757026 prediction 0.458134017660945 Functional Loss - LIN28B ENSG00000187772 CDS Human protein_coding chr6:105526434 chr6:105526436 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_75680 0 0 1 2 105526418 105526439 mRNA hsa-miR-125b LIN28B miRanda miRanda
6179 chr6 105526436 105526436 1 + G T LUAD 105526434 + 105526414 105526454 41 CACAGCCACCCGCGAGTTCTCAGGGAAGACAGGAAGCAGAA CACAGCCACCCGCGAGTTCTCATGGAAGACAGGAAGCAGAA < 41bp 0.899765772628608 0.670698763798136 0.9499831 0.8757026 prediction 0.458134017660945 Functional Loss - LIN28B ENSG00000187772 CDS Human protein_coding chr6:105526434 chr6:105526436 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_75680 0 0 1 2 105526416 105526439 mRNA hsa-miR-125a-5p LIN28B miRanda miRanda
6180 chr17 19452969 19452969 1 + G A BRCA 19452966 + 19452946 19452986 41 AGGCTTACCCAGACCTATGTCACGATCTTCATTCCAGCTCT AGGCTTACCCAGACCTATGTCACAATCTTCATTCCAGCTCT < 41bp 0.759634731354659 0.530625973935923 0.25975543 0.09208068 prediction 0.458017514837471 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19452966 chr17:19452969 nonsynonymous SNV 0.913 0 24 hm5C_associated_SNPs_75721 0 0 1 1 19452949 19452972 mRNA hsa-miR-487b SLC47A1 miRanda miRanda
6181 chr1 25168518 25168518 1 + G T rs76330923 25168515 + 25168495 25168535 41 TATAAAAGAAAGATAAAACACAGGTCACCAATTTTCTCATT TATAAAAGAAAGATAAAACACAGTTCACCAATTTTCTCATT < 41bp 0.728990058725293 0.366707725600325 0.3049627 0.09445807 prediction 0.457980117450586 Functional Loss - CLIC4 ENSG00000169504 UTR3 Human protein_coding chr1:25168515 chr1:25168518 . . 0 24 hm5C_associated_SNPs_75738 0 0 1 1 25168518 25168539 mRNA hsa-miR-203 CLIC4 miRanda miRanda
6182 chr3 38354921 38354921 1 + G A COAD 38354918 + 38354898 38354938 41 AGGTGACTCGGGCCTCTGTCCTGGACTTCTGTAAGAATAGG AGGTGACTCGGGCCTCTGTCCTGAACTTCTGTAAGAATAGG < 41bp 0.771255834208385 0.54227482820582 0.788638 0.22111958 prediction 0.457962012005129 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38354918 chr3:38354921 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_75743 0 0 0 1 38354920 38354944 mRNA hsa-miR-22 SLC22A14 miRanda miRanda
6183 chr2 157407168 157407168 1 + C T STAD 157407166 + 157407146 157407186 41 ATCAATGCCACGGGACCTTTCACGGACTCTGTGCGCAAAAT ATCAATGCCACGGGACCTTTCATGGACTCTGTGCGCAAAAT < 41bp 0.728977638708306 0.44218271004683 0.5107824 0.56102836 prediction 0.457955277416612 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407166 chr2:157407168 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_75745 0 0 1 1 157407151 157407168 mRNA hsa-miR-488 GPD2 miRanda miRanda
6184 chr7 44079278 44079278 1 + G T rs531700145 44079276 + 44079256 44079296 41 GGACTGCCTGGAGGTGACAGCAGGAAGGACCAGGTTCTGCT GGACTGCCTGGAGGTGACAGCATGAAGGACCAGGTTCTGCT < 41bp 0.728952310413363 0.385416401638604 0.89669585 0.63154376 prediction 0.457904620826726 Functional Loss - LINC00957;RASA4CP ENSG00000235314 ncRNA_exonic Human lincRNA chr7:44079276 chr7:44079278 . . 0 23 hm5C_associated_SNPs_75765 0 0 0 1 44079259 44079280 mRNA hsa-miR-370 FLJ35390 miRanda miRanda
6185 chr19 22786092 22786092 1 + G T UCEC 22786089 + 22786069 22786109 41 AGGCCGGGGAGGGTTCTCCCCTCGACAACCCCAGTGCACAG AGGCCGGGGAGGGTTCTCCCCTCTACAACCCCAGTGCACAG < 41bp 0.911134573738425 0.682232114177281 0.805581 0.88840437 prediction 0.457804919122287 Functional Loss - GOLGA2P9 ENSG00000268823;ENSG00000269332 ncRNA_exonic Human other chr19:22786089 chr19:22786092 . . 0 24 hm5C_associated_SNPs_75797 0 0 0 1 22786084 22786108 mRNA hsa-miR-134 LOC440518 miRanda miRanda
6186 chr19 18468277 18468277 1 + G A UCEC 18468274 + 18468254 18468294 41 ACAACAAGGGCTACAAGGGGCTGGACAACTGCCGCTTTTGC ACAACAAGGGCTACAAGGGGCTGAACAACTGCCGCTTTTGC < 41bp 0.758820395060068 0.530020406168629 0.24356368 0.2180734 prediction 0.457599977782879 Functional Loss - PGPEP1 ENSG00000130517 CDS Human protein_coding chr19:18468274 chr19:18468277 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_75859 0 0 0 1 18468266 18468287 mRNA hsa-miR-34a PGPEP1 miRanda miRanda
6187 chr12 55422252 55422252 1 + C T rs552459073 55422250 + 55422230 55422270 41 TACTATAGTTCAGGGACTCTCTCCAGCTCACAGTTGCCCAT TACTATAGTTCAGGGACTCTCTTCAGCTCACAGTTGCCCAT < 41bp 0.728790212071709 0.495429046826244 0.9161787 0.026895672 prediction 0.457580424143418 Functional Loss - NEUROD4 ENSG00000123307 UTR3 Human protein_coding chr12:55422250 chr12:55422252 . . 0 23 hm5C_associated_SNPs_75870 0 0 0 1 55422233 55422254 mRNA hsa-miR-185 NEUROD4 miRanda miRanda
6188 chr19 52794265 52794265 1 + A T UCEC 52794261 + 52794241 52794281 41 ACGACATCAGAAAATTCACACTGGAGAGAAACCTTACAAAT ACGACATCAGAAAATTCACACTGGTGAGAAACCTTACAAAT < 41bp 0.872646661981694 0.643873092824617 0.13515061 0.1329804 prediction 0.457547138314154 Functional Loss - ZNF766 ENSG00000196214 CDS Human protein_coding chr19:52794261 chr19:52794265 synonymous SNV . 0 25 hm5C_associated_SNPs_75883 0 0 0 2 52794245 52794265 mRNA hsa-miR-199a-5p ZNF766 miRanda miRanda
6189 chr19 52794265 52794265 1 + A T UCEC 52794261 + 52794241 52794281 41 ACGACATCAGAAAATTCACACTGGAGAGAAACCTTACAAAT ACGACATCAGAAAATTCACACTGGTGAGAAACCTTACAAAT < 41bp 0.872646661981694 0.643873092824617 0.13515061 0.1329804 prediction 0.457547138314154 Functional Loss - ZNF766 ENSG00000196214 CDS Human protein_coding chr19:52794261 chr19:52794265 synonymous SNV . 0 25 hm5C_associated_SNPs_75883 0 0 0 2 52794245 52794265 mRNA hsa-miR-199b-5p ZNF766 miRanda miRanda
6190 chr6 41757059 41757059 1 + G A COAD 41757056 + 41757036 41757076 41 TGACCTCATGGCACCTCAGCCAGGGGTGTAGCCAAGTAGGT TGACCTCATGGCACCTCAGCCAGAGGTGTAGCCAAGTAGGT < 41bp 0.741631465816348 0.512881699885304 0.92336166 0.90517056 prediction 0.457499531862088 Functional Loss - TOMM6 ENSG00000214736 CDS Human protein_coding chr6:41757056 chr6:41757059 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_75907 0 0 1 1 41757038 41757060 mRNA hsa-miR-370 TOMM6 miRanda miRanda
6191 chr19 11022924 11022924 1 + G A UCEC 11022921 + 11022901 11022941 41 TTTTGCCGCCCAAGCTGGAGCACGGAAAATCTACGCGGTGG TTTTGCCGCCCAAGCTGGAGCACAGAAAATCTACGCGGTGG < 41bp 0.775579730064777 0.546832220841969 0.32916245 0.18707386 prediction 0.457495018445616 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11022921 chr19:11022924 nonsynonymous SNV 0.985 2 24 hm5C_associated_SNPs_75908 0 0 1 2 11022915 11022940 mRNA hsa-miR-99a CARM1 miRanda miRanda
6192 chr19 11022924 11022924 1 + G A UCEC 11022921 + 11022901 11022941 41 TTTTGCCGCCCAAGCTGGAGCACGGAAAATCTACGCGGTGG TTTTGCCGCCCAAGCTGGAGCACAGAAAATCTACGCGGTGG < 41bp 0.775579730064777 0.546832220841969 0.32916245 0.18707386 prediction 0.457495018445616 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11022921 chr19:11022924 nonsynonymous SNV 0.985 2 24 hm5C_associated_SNPs_75908 0 0 1 2 11022915 11022940 mRNA hsa-miR-100 CARM1 miRanda miRanda
6193 chr18 33738801 33738801 1 + G T BLCA 33738798 + 33738778 33738818 41 TATTATATTTTCTATTCTAGCAAGATAGTGATCTTCCAGAA TATTATATTTTCTATTCTAGCAATATAGTGATCTTCCAGAA < 41bp 0.728745179579069 0.363677233169209 0.43283683 0.10197067 prediction 0.457490359158139 Functional Loss - ELP2 ENSG00000134759 CDS Human protein_coding chr18:33738798 chr18:33738801 nonsynonymous SNV 0.096 0 24 hm5C_associated_SNPs_75912 0 0 1 1 33738798 33738813 mRNA hsa-miR-224 ELP2 miRanda miRanda
6194 chr19 42083749 42083749 1 + G A LUSC 42083746 + 42083726 42083766 41 CAGCATATGTAATAGACACTCACGTTAGGACTCCAGGGCCT CAGCATATGTAATAGACACTCACATTAGGACTCCAGGGCCT < 41bp 0.778773368734383 0.550050704788028 0.1365228 0.048855275 prediction 0.45744532789271 Functional Loss - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42083746 chr19:42083749 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_75932 0 0 0 3 42083743 42083764 mRNA hsa-miR-125b CEACAM21 miRanda miRanda
6195 chr19 42083749 42083749 1 + G A LUSC 42083746 + 42083726 42083766 41 CAGCATATGTAATAGACACTCACGTTAGGACTCCAGGGCCT CAGCATATGTAATAGACACTCACATTAGGACTCCAGGGCCT < 41bp 0.778773368734383 0.550050704788028 0.1365228 0.048855275 prediction 0.45744532789271 Functional Loss - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42083746 chr19:42083749 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_75932 0 0 0 3 42083727 42083749 mRNA hsa-miR-142-3p CEACAM21 miRanda miRanda
6196 chr19 42083749 42083749 1 + G A LUSC 42083746 + 42083726 42083766 41 CAGCATATGTAATAGACACTCACGTTAGGACTCCAGGGCCT CAGCATATGTAATAGACACTCACATTAGGACTCCAGGGCCT < 41bp 0.778773368734383 0.550050704788028 0.1365228 0.048855275 prediction 0.45744532789271 Functional Loss - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42083746 chr19:42083749 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_75932 0 0 0 3 42083743 42083764 mRNA hsa-miR-125a-5p CEACAM21 miRanda miRanda
6197 chr7 23224757 23224757 1 + T C LUAD 23224756 + 23224736 23224776 41 GTCATCCAGCCATCCAGTTTCTCCAAATCCACACCATGGGG GTCATCCAGCCATCCAGTTTCCCCAAATCCACACCATGGGG < 41bp 0.786012052651991 0.557297611177901 0.96649086 0.09211692 prediction 0.457428882948181 Functional Loss - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23224756 chr7:23224757 nonsynonymous SNV 0.989 0 22 hm5C_associated_SNPs_75943 0 0 1 1 23224738 23224759 mRNA hsa-miR-146a NUPL2 miRanda miRanda
6198 chr11 89925343 89925343 1 + A T rs552402860 89925339 + 89925319 89925359 41 AGAAGGAAAAACAATGATCACAGCAATACTTGTATGCATGT AGAAGGAAAAACAATGATCACAGCTATACTTGTATGCATGT < 41bp 0.834505212176702 0.605793955458816 0.811895 0.74303687 prediction 0.457422513435772 Functional Loss - NAALAD2 ENSG00000077616 UTR3 Human protein_coding chr11:89925339 chr11:89925343 . . 0 25 hm5C_associated_SNPs_75945 0 0 0 4 89925335 89925360 mRNA hsa-miR-217 NAALAD2 miRanda miRanda
6199 chr11 89925343 89925343 1 + A T rs552402860 89925339 + 89925319 89925359 41 AGAAGGAAAAACAATGATCACAGCAATACTTGTATGCATGT AGAAGGAAAAACAATGATCACAGCTATACTTGTATGCATGT < 41bp 0.834505212176702 0.605793955458816 0.811895 0.74303687 prediction 0.457422513435772 Functional Loss - NAALAD2 ENSG00000077616 UTR3 Human protein_coding chr11:89925339 chr11:89925343 . . 0 25 hm5C_associated_SNPs_75945 0 0 0 4 89925324 89925347 mRNA hsa-miR-137 NAALAD2 miRanda miRanda
6200 chr11 89925343 89925343 1 + A T rs552402860 89925339 + 89925319 89925359 41 AGAAGGAAAAACAATGATCACAGCAATACTTGTATGCATGT AGAAGGAAAAACAATGATCACAGCTATACTTGTATGCATGT < 41bp 0.834505212176702 0.605793955458816 0.811895 0.74303687 prediction 0.457422513435772 Functional Loss - NAALAD2 ENSG00000077616 UTR3 Human protein_coding chr11:89925339 chr11:89925343 . . 0 25 hm5C_associated_SNPs_75945 0 0 0 4 89925333 89925354 mRNA hsa-miR-381 NAALAD2 miRanda miRanda
6201 chr11 89925343 89925343 1 + A T rs552402860 89925339 + 89925319 89925359 41 AGAAGGAAAAACAATGATCACAGCAATACTTGTATGCATGT AGAAGGAAAAACAATGATCACAGCTATACTTGTATGCATGT < 41bp 0.834505212176702 0.605793955458816 0.811895 0.74303687 prediction 0.457422513435772 Functional Loss - NAALAD2 ENSG00000077616 UTR3 Human protein_coding chr11:89925339 chr11:89925343 . . 0 25 hm5C_associated_SNPs_75945 0 0 0 4 89925333 89925354 mRNA hsa-miR-300 NAALAD2 miRanda miRanda
6202 chr6 35391746 35391746 1 + G T LUAD 35391743 + 35391723 35391763 41 CTATCCGTTTTGGTCGGATGCCGGAGGCTGAGAAGAGGAAG CTATCCGTTTTGGTCGGATGCCGTAGGCTGAGAAGAGGAAG < 41bp 0.728637419040574 0.333271502351738 0.8646779 0.2997532 prediction 0.457274838081147 Functional Loss - PPARD ENSG00000112033 CDS Human protein_coding chr6:35391743 chr6:35391746 stopgain 0.976 1 24 hm5C_associated_SNPs_75986 0 0 1 1 35391724 35391746 mRNA hsa-miR-127-3p PPARD miRanda miRanda
6203 chr4 115544185 115544185 1 + A C SARC 115544184 + 115544164 115544204 41 CAGCCTTGCACGAGAGAGGCCACCATACAGTGTTCCTCCTC CAGCCTTGCACGAGAGAGGCCCCCATACAGTGTTCCTCCTC < 41bp 0.797903610104875 0.569269664105645 0.16541651 0.15095201 prediction 0.457267891998459 Functional Loss - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115544184 chr4:115544185 nonsynonymous SNV 0.914 4 22 hm5C_associated_SNPs_75987 0 0 1 3 115544177 115544198 mRNA hsa-miR-141 UGT8 miRanda miRanda
6204 chr4 115544185 115544185 1 + A C SARC 115544184 + 115544164 115544204 41 CAGCCTTGCACGAGAGAGGCCACCATACAGTGTTCCTCCTC CAGCCTTGCACGAGAGAGGCCCCCATACAGTGTTCCTCCTC < 41bp 0.797903610104875 0.569269664105645 0.16541651 0.15095201 prediction 0.457267891998459 Functional Loss - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115544184 chr4:115544185 nonsynonymous SNV 0.914 4 22 hm5C_associated_SNPs_75987 0 0 1 3 115544177 115544198 mRNA hsa-miR-200a UGT8 miRanda miRanda
6205 chr4 115544185 115544185 1 + A C SARC 115544184 + 115544164 115544204 41 CAGCCTTGCACGAGAGAGGCCACCATACAGTGTTCCTCCTC CAGCCTTGCACGAGAGAGGCCCCCATACAGTGTTCCTCCTC < 41bp 0.797903610104875 0.569269664105645 0.16541651 0.15095201 prediction 0.457267891998459 Functional Loss - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115544184 chr4:115544185 nonsynonymous SNV 0.914 4 22 hm5C_associated_SNPs_75987 0 0 1 3 115544163 115544186 mRNA hsa-miR-328 UGT8 miRanda miRanda
6206 chr21 39580352 39580352 1 + A T CESC 39580348 + 39580328 39580368 41 CCTGCTTCCTGGGCTCCAGACAGAAACACCGTACCCCTGCA CCTGCTTCCTGGGCTCCAGACAGATACACCGTACCCCTGCA < 41bp 0.830774466848078 0.602174354594601 0.45214623 0.57167166 prediction 0.457200224506954 Functional Loss - DSCR10 ENSG00000233316 ncRNA_exonic Human sense_intronic chr21:39580348 chr21:39580352 . . 0 25 hm5C_associated_SNPs_76010 0 0 0 1 39580352 39580374 mRNA hsa-miR-138 DSCR10 miRanda miRanda
6207 chr1 48705037 48705037 1 + T C CESC 48705036 + 48705016 48705056 41 TTGGCCTGGGAGTGGGGCTTCTGCGTATGATCCTGGAGTTC TTGGCCTGGGAGTGGGGCTTCCGCGTATGATCCTGGAGTTC < 41bp 0.762423516646143 0.533828012266327 0.30363122 0.46304387 prediction 0.457191008759633 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48705036 chr1:48705037 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_76013 0 0 1 2 48705035 48705059 mRNA hsa-miR-146a SLC5A9 miRanda miRanda
6208 chr1 48705037 48705037 1 + T C CESC 48705036 + 48705016 48705056 41 TTGGCCTGGGAGTGGGGCTTCTGCGTATGATCCTGGAGTTC TTGGCCTGGGAGTGGGGCTTCCGCGTATGATCCTGGAGTTC < 41bp 0.762423516646143 0.533828012266327 0.30363122 0.46304387 prediction 0.457191008759633 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48705036 chr1:48705037 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_76013 0 0 1 2 48705037 48705059 mRNA hsa-miR-146b-5p SLC5A9 miRanda miRanda
6209 chr18 8831661 8831661 1 + G A CESC 8831658 + 8831638 8831678 41 GAGCCCTGCTTCTCCAGGCCCGAGAGACCAGCAAACCGTCG GAGCCCTGCTTCTCCAGGCCCGAAAGACCAGCAAACCGTCG < 41bp 0.74662291879095 0.518125992804385 0.9364393 0.4271522 prediction 0.45699385197313 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8831658 chr18:8831661 synonymous SNV . 0 24 hm5C_associated_SNPs_76060 0 0 0 1 8831642 8831664 mRNA hsa-miR-330-5p KIAA0802 miRanda miRanda
6210 chr11 65715228 65715228 1 + G A LUSC 65715225 + 65715205 65715245 41 AAGGCGACAATGGAGGAAGACAAGGGCCAAGGAGCTGCAGG AAGGCGACAATGGAGGAAGACAAAGGCCAAGGAGCTGCAGG < 41bp 0.755879927395155 0.527421928469419 0.28518856 0.16130382 prediction 0.456915997851472 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65715225 chr11:65715228 unknown 0.042 0 24 hm5C_associated_SNPs_76078 0 0 0 1 65715213 65715234 mRNA hsa-miR-328 TSGA10IP miRanda miRanda
6211 chr17 48246591 48246591 1 + C T GBM 48246589 + 48246569 48246609 41 ACACCTTGGCACCCCACTTCCGCGTTGACTGGTGCAATGTG ACACCTTGGCACCCCACTTCCGTGTTGACTGGTGCAATGTG < 41bp 0.728409858107595 0.463621835806433 0.22121724 0.20842165 prediction 0.456819716215189 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48246589 chr17:48246591 synonymous SNV . 0 23 hm5C_associated_SNPs_76107 0 0 0 3 48246589 48246611 mRNA hsa-miR-23a SGCA miRanda miRanda
6212 chr17 48246591 48246591 1 + C T GBM 48246589 + 48246569 48246609 41 ACACCTTGGCACCCCACTTCCGCGTTGACTGGTGCAATGTG ACACCTTGGCACCCCACTTCCGTGTTGACTGGTGCAATGTG < 41bp 0.728409858107595 0.463621835806433 0.22121724 0.20842165 prediction 0.456819716215189 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48246589 chr17:48246591 synonymous SNV . 0 23 hm5C_associated_SNPs_76107 0 0 0 3 48246588 48246609 mRNA hsa-miR-181c SGCA miRanda miRanda
6213 chr17 48246591 48246591 1 + C T GBM 48246589 + 48246569 48246609 41 ACACCTTGGCACCCCACTTCCGCGTTGACTGGTGCAATGTG ACACCTTGGCACCCCACTTCCGTGTTGACTGGTGCAATGTG < 41bp 0.728409858107595 0.463621835806433 0.22121724 0.20842165 prediction 0.456819716215189 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48246589 chr17:48246591 synonymous SNV . 0 23 hm5C_associated_SNPs_76107 0 0 0 3 48246589 48246611 mRNA hsa-miR-23b SGCA miRanda miRanda
6214 chr12 121660838 121660838 1 + C T COAD 121660836 + 121660816 121660856 41 GCCCGGTGGAGGATGACACACACGTGCCACAGTGAGTCCAG GCCCGGTGGAGGATGACACACATGTGCCACAGTGAGTCCAG < 41bp 0.797541402679961 0.569142861103577 0.059645683 0.073813766 prediction 0.456797083152768 Functional Loss - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660836 chr12:121660838 synonymous SNV . 0 23 hm5C_associated_SNPs_76112 0 0 0 2 121660823 121660844 mRNA hsa-miR-449a P2RX4 miRanda miRanda
6215 chr12 121660838 121660838 1 + C T COAD 121660836 + 121660816 121660856 41 GCCCGGTGGAGGATGACACACACGTGCCACAGTGAGTCCAG GCCCGGTGGAGGATGACACACATGTGCCACAGTGAGTCCAG < 41bp 0.797541402679961 0.569142861103577 0.059645683 0.073813766 prediction 0.456797083152768 Functional Loss - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660836 chr12:121660838 synonymous SNV . 0 23 hm5C_associated_SNPs_76112 0 0 0 2 121660823 121660844 mRNA hsa-miR-449b P2RX4 miRanda miRanda
6216 chr8 10389056 10389056 1 + G A UCEC 10389053 + 10389033 10389073 41 AGGTTGGGGCCAGACCAATGCTGGTATGTGACTGCTCAGCT AGGTTGGGGCCAGACCAATGCTGATATGTGACTGCTCAGCT < 41bp 0.784446138640117 0.556065883478257 0.5893957 0.30412322 prediction 0.456760510323719 Functional Loss - PRSS55 ENSG00000184647;ENSG00000184647 exonic;splicing Human other chr8:10389053 chr8:10389056 unknown 0.026 0 24 hm5C_associated_SNPs_76126 0 0 0 5 10389046 10389069 mRNA hsa-miR-15a PRSS55 miRanda miRanda
6217 chr8 10389056 10389056 1 + G A UCEC 10389053 + 10389033 10389073 41 AGGTTGGGGCCAGACCAATGCTGGTATGTGACTGCTCAGCT AGGTTGGGGCCAGACCAATGCTGATATGTGACTGCTCAGCT < 41bp 0.784446138640117 0.556065883478257 0.5893957 0.30412322 prediction 0.456760510323719 Functional Loss - PRSS55 ENSG00000184647;ENSG00000184647 exonic;splicing Human other chr8:10389053 chr8:10389056 unknown 0.026 0 24 hm5C_associated_SNPs_76126 0 0 0 5 10389045 10389069 mRNA hsa-miR-16 PRSS55 miRanda miRanda
6218 chr8 10389056 10389056 1 + G A UCEC 10389053 + 10389033 10389073 41 AGGTTGGGGCCAGACCAATGCTGGTATGTGACTGCTCAGCT AGGTTGGGGCCAGACCAATGCTGATATGTGACTGCTCAGCT < 41bp 0.784446138640117 0.556065883478257 0.5893957 0.30412322 prediction 0.456760510323719 Functional Loss - PRSS55 ENSG00000184647;ENSG00000184647 exonic;splicing Human other chr8:10389053 chr8:10389056 unknown 0.026 0 24 hm5C_associated_SNPs_76126 0 0 0 5 10389047 10389069 mRNA hsa-miR-15b PRSS55 miRanda miRanda
6219 chr8 10389056 10389056 1 + G A UCEC 10389053 + 10389033 10389073 41 AGGTTGGGGCCAGACCAATGCTGGTATGTGACTGCTCAGCT AGGTTGGGGCCAGACCAATGCTGATATGTGACTGCTCAGCT < 41bp 0.784446138640117 0.556065883478257 0.5893957 0.30412322 prediction 0.456760510323719 Functional Loss - PRSS55 ENSG00000184647;ENSG00000184647 exonic;splicing Human other chr8:10389053 chr8:10389056 unknown 0.026 0 24 hm5C_associated_SNPs_76126 0 0 0 5 10389046 10389069 mRNA hsa-miR-195 PRSS55 miRanda miRanda
6220 chr8 10389056 10389056 1 + G A UCEC 10389053 + 10389033 10389073 41 AGGTTGGGGCCAGACCAATGCTGGTATGTGACTGCTCAGCT AGGTTGGGGCCAGACCAATGCTGATATGTGACTGCTCAGCT < 41bp 0.784446138640117 0.556065883478257 0.5893957 0.30412322 prediction 0.456760510323719 Functional Loss - PRSS55 ENSG00000184647;ENSG00000184647 exonic;splicing Human other chr8:10389053 chr8:10389056 unknown 0.026 0 24 hm5C_associated_SNPs_76126 0 0 0 5 10389036 10389057 mRNA hsa-miR-338-3p PRSS55 miRanda miRanda
6221 chr1 207073701 207073701 1 + C T BLCA 207073699 + 207073679 207073719 41 CAGGAGGTTCTGCAGAACGTCTCGGTAATCAGACCTCGGGG CAGGAGGTTCTGCAGAACGTCTTGGTAATCAGACCTCGGGG < 41bp 0.823195639665991 0.594887340128899 0.029550344 0.031339943 prediction 0.456616599074185 Functional Loss - IL24 ENSG00000162892 CDS Human protein_coding chr1:207073699 chr1:207073701 nonsynonymous SNV 0.980 2 23 hm5C_associated_SNPs_76174 0 0 0 3 207073699 207073702 mRNA hsa-miR-132 IL24 miRanda miRanda
6222 chr1 207073701 207073701 1 + C T BLCA 207073699 + 207073679 207073719 41 CAGGAGGTTCTGCAGAACGTCTCGGTAATCAGACCTCGGGG CAGGAGGTTCTGCAGAACGTCTTGGTAATCAGACCTCGGGG < 41bp 0.823195639665991 0.594887340128899 0.029550344 0.031339943 prediction 0.456616599074185 Functional Loss - IL24 ENSG00000162892 CDS Human protein_coding chr1:207073699 chr1:207073701 nonsynonymous SNV 0.980 2 23 hm5C_associated_SNPs_76174 0 0 0 3 207073699 207073702 mRNA hsa-miR-194 IL24 miRanda miRanda
6223 chr1 207073701 207073701 1 + C T BLCA 207073699 + 207073679 207073719 41 CAGGAGGTTCTGCAGAACGTCTCGGTAATCAGACCTCGGGG CAGGAGGTTCTGCAGAACGTCTTGGTAATCAGACCTCGGGG < 41bp 0.823195639665991 0.594887340128899 0.029550344 0.031339943 prediction 0.456616599074185 Functional Loss - IL24 ENSG00000162892 CDS Human protein_coding chr1:207073699 chr1:207073701 nonsynonymous SNV 0.980 2 23 hm5C_associated_SNPs_76174 0 0 0 3 207073696 207073702 mRNA hsa-miR-181d IL24 miRanda miRanda
6224 chr22 32253535 32253535 1 + G T LUAD 32253532 + 32253512 32253552 41 TCCCACCTACATGGACAGCCCACGAAAGGTAAAGGAAGCCG TCCCACCTACATGGACAGCCCACTAAAGGTAAAGGAAGCCG < 41bp 0.728281753721097 0.370268681101344 0.09058678 0.23244366 prediction 0.456563507442194 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32253532 chr22:32253535 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_76188 0 0 0 2 32253534 32253539 mRNA hsa-miR-133a DEPDC5 miRanda miRanda
6225 chr22 32253535 32253535 1 + G T LUAD 32253532 + 32253512 32253552 41 TCCCACCTACATGGACAGCCCACGAAAGGTAAAGGAAGCCG TCCCACCTACATGGACAGCCCACTAAAGGTAAAGGAAGCCG < 41bp 0.728281753721097 0.370268681101344 0.09058678 0.23244366 prediction 0.456563507442194 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32253532 chr22:32253535 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_76188 0 0 0 2 32253534 32253539 mRNA hsa-miR-133b DEPDC5 miRanda miRanda
6226 chr8 80567198 80567198 1 + C T SKCM 80567195 + 80567175 80567215 41 GCTTTGGAGGAGAACAACAACTTCAGCAAGATGGCGGAGGA GCTTTGGAGGAGAACAACAACTTTAGCAAGATGGCGGAGGA < 41bp 0.743684042748713 0.515546886054529 0.109202445 0.12555644 prediction 0.456274313388369 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80567195 chr8:80567198 synonymous SNV . 0 24 hm5C_associated_SNPs_76264 0 0 0 1 80567178 80567198 mRNA hsa-miR-382 STMN2 miRanda miRanda
6227 chr19 18499830 18499830 1 + A C rs114929417 18499826 + 18499806 18499846 41 TGTGGAATGGGCTCAAGGTTCCTGAGACACCCGATTCCTGC TGTGGAATGGGCTCAAGGTTCCTGCGACACCCGATTCCTGC < 41bp 0.72809418168148 0.346871347314364 0.1468848 0.090331376 prediction 0.456188363362961 Functional Loss - GDF15 ENSG00000130513 UTR3 Human protein_coding chr19:18499826 chr19:18499830 . . 0 25 hm5C_associated_SNPs_76294 0 0 1 1 18499811 18499830 mRNA hsa-miR-873 GDF15 miRanda miRanda
6228 chr19 6751284 6751284 1 + C T CESC 6751282 + 6751262 6751302 41 GCTTCTGGGCCACGGGGAGCCCCAGGACCTATGCACTTTAT GCTTCTGGGCCACGGGGAGCCCTAGGACCTATGCACTTTAT < 41bp 0.727948185491153 0.483435966204213 0.32242483 0.22223711 prediction 0.455896370982305 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751282 chr19:6751284 stopgain 0.964 0 23 hm5C_associated_SNPs_76387 0 0 1 8 6751280 6751301 mRNA hsa-miR-17 TRIP10 miRanda miRanda
6229 chr19 6751284 6751284 1 + C T CESC 6751282 + 6751262 6751302 41 GCTTCTGGGCCACGGGGAGCCCCAGGACCTATGCACTTTAT GCTTCTGGGCCACGGGGAGCCCTAGGACCTATGCACTTTAT < 41bp 0.727948185491153 0.483435966204213 0.32242483 0.22223711 prediction 0.455896370982305 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751282 chr19:6751284 stopgain 0.964 0 23 hm5C_associated_SNPs_76387 0 0 1 8 6751280 6751301 mRNA hsa-miR-20a TRIP10 miRanda miRanda
6230 chr19 6751284 6751284 1 + C T CESC 6751282 + 6751262 6751302 41 GCTTCTGGGCCACGGGGAGCCCCAGGACCTATGCACTTTAT GCTTCTGGGCCACGGGGAGCCCTAGGACCTATGCACTTTAT < 41bp 0.727948185491153 0.483435966204213 0.32242483 0.22223711 prediction 0.455896370982305 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751282 chr19:6751284 stopgain 0.964 0 23 hm5C_associated_SNPs_76387 0 0 1 8 6751280 6751301 mRNA hsa-miR-93 TRIP10 miRanda miRanda
6231 chr19 6751284 6751284 1 + C T CESC 6751282 + 6751262 6751302 41 GCTTCTGGGCCACGGGGAGCCCCAGGACCTATGCACTTTAT GCTTCTGGGCCACGGGGAGCCCTAGGACCTATGCACTTTAT < 41bp 0.727948185491153 0.483435966204213 0.32242483 0.22223711 prediction 0.455896370982305 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751282 chr19:6751284 stopgain 0.964 0 23 hm5C_associated_SNPs_76387 0 0 1 8 6751280 6751301 mRNA hsa-miR-106a TRIP10 miRanda miRanda
6232 chr19 6751284 6751284 1 + C T CESC 6751282 + 6751262 6751302 41 GCTTCTGGGCCACGGGGAGCCCCAGGACCTATGCACTTTAT GCTTCTGGGCCACGGGGAGCCCTAGGACCTATGCACTTTAT < 41bp 0.727948185491153 0.483435966204213 0.32242483 0.22223711 prediction 0.455896370982305 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751282 chr19:6751284 stopgain 0.964 0 23 hm5C_associated_SNPs_76387 0 0 1 8 6751275 6751297 mRNA hsa-miR-153 TRIP10 miRanda miRanda
6233 chr19 6751284 6751284 1 + C T CESC 6751282 + 6751262 6751302 41 GCTTCTGGGCCACGGGGAGCCCCAGGACCTATGCACTTTAT GCTTCTGGGCCACGGGGAGCCCTAGGACCTATGCACTTTAT < 41bp 0.727948185491153 0.483435966204213 0.32242483 0.22223711 prediction 0.455896370982305 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751282 chr19:6751284 stopgain 0.964 0 23 hm5C_associated_SNPs_76387 0 0 1 8 6751282 6751301 mRNA hsa-miR-106b TRIP10 miRanda miRanda
6234 chr19 6751284 6751284 1 + C T CESC 6751282 + 6751262 6751302 41 GCTTCTGGGCCACGGGGAGCCCCAGGACCTATGCACTTTAT GCTTCTGGGCCACGGGGAGCCCTAGGACCTATGCACTTTAT < 41bp 0.727948185491153 0.483435966204213 0.32242483 0.22223711 prediction 0.455896370982305 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751282 chr19:6751284 stopgain 0.964 0 23 hm5C_associated_SNPs_76387 0 0 1 8 6751280 6751301 mRNA hsa-miR-20b TRIP10 miRanda miRanda
6235 chr19 6751284 6751284 1 + C T CESC 6751282 + 6751262 6751302 41 GCTTCTGGGCCACGGGGAGCCCCAGGACCTATGCACTTTAT GCTTCTGGGCCACGGGGAGCCCTAGGACCTATGCACTTTAT < 41bp 0.727948185491153 0.483435966204213 0.32242483 0.22223711 prediction 0.455896370982305 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751282 chr19:6751284 stopgain 0.964 0 23 hm5C_associated_SNPs_76387 0 0 1 8 6751280 6751301 mRNA hsa-miR-519d TRIP10 miRanda miRanda
6236 chr16 31501829 31501829 1 - C T COAD 31501832 - 31501812 31501852 41 GCATAGAAGCCCCAGAGGAACACGGCCACTGCCATCATGAG GCATAGAAGCCCCAGAGGAACACAGCCACTGCCATCATGAG < 41bp 0.785582154009713 0.557682430739371 0.085048884 0.054463893 prediction 0.455799446540683 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31501832 chr16:31501829 synonymous SNV . 0 24 hm5C_associated_SNPs_76418 0 0 1 4 31501819 31501840 mRNA hsa-miR-34a C16orf58 miRanda miRanda
6237 chr16 31501829 31501829 1 - C T COAD 31501832 - 31501812 31501852 41 GCATAGAAGCCCCAGAGGAACACGGCCACTGCCATCATGAG GCATAGAAGCCCCAGAGGAACACAGCCACTGCCATCATGAG < 41bp 0.785582154009713 0.557682430739371 0.085048884 0.054463893 prediction 0.455799446540683 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31501832 chr16:31501829 synonymous SNV . 0 24 hm5C_associated_SNPs_76418 0 0 1 4 31501819 31501841 mRNA hsa-miR-34c-5p C16orf58 miRanda miRanda
6238 chr16 31501829 31501829 1 - C T COAD 31501832 - 31501812 31501852 41 GCATAGAAGCCCCAGAGGAACACGGCCACTGCCATCATGAG GCATAGAAGCCCCAGAGGAACACAGCCACTGCCATCATGAG < 41bp 0.785582154009713 0.557682430739371 0.085048884 0.054463893 prediction 0.455799446540683 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31501832 chr16:31501829 synonymous SNV . 0 24 hm5C_associated_SNPs_76418 0 0 1 4 31501819 31501841 mRNA hsa-miR-449a C16orf58 miRanda miRanda
6239 chr16 31501829 31501829 1 - C T COAD 31501832 - 31501812 31501852 41 GCATAGAAGCCCCAGAGGAACACGGCCACTGCCATCATGAG GCATAGAAGCCCCAGAGGAACACAGCCACTGCCATCATGAG < 41bp 0.785582154009713 0.557682430739371 0.085048884 0.054463893 prediction 0.455799446540683 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31501832 chr16:31501829 synonymous SNV . 0 24 hm5C_associated_SNPs_76418 0 0 1 4 31501819 31501841 mRNA hsa-miR-449b C16orf58 miRanda miRanda
6240 chr8 36763287 36763287 1 + T C COAD 36763286 + 36763266 36763306 41 GATAGCAGTGGGATGTTTCACTGGTGCAAACCAACCTCTTT GATAGCAGTGGGATGTTTCACCGGTGCAAACCAACCTCTTT < 41bp 0.732562578967031 0.504667722620875 0.8819586 0.8969761 prediction 0.455789712692312 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36763286 chr8:36763287 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_76422 0 0 0 1 36763272 36763292 mRNA hsa-miR-128 KCNU1 miRanda miRanda
6241 chr11 64807695 64807695 1 + G A rs377178162 64807692 + 64807672 64807712 41 ACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGT ACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGT < 41bp 0.752983625623136 0.525282352091288 0.9069637 0.8577789 prediction 0.455402547063695 Functional Loss - ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807692 chr11:64807695 . . 0 24 hm5C_associated_SNPs_76538 0 0 0 4 64807687 64807709 mRNA hsa-let-7b SNX15 miRanda miRanda
6242 chr11 64807695 64807695 1 + G A rs377178162 64807692 + 64807672 64807712 41 ACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGT ACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGT < 41bp 0.752983625623136 0.525282352091288 0.9069637 0.8577789 prediction 0.455402547063695 Functional Loss - ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807692 chr11:64807695 . . 0 24 hm5C_associated_SNPs_76538 0 0 0 4 64807687 64807709 mRNA hsa-let-7e SNX15 miRanda miRanda
6243 chr11 64807695 64807695 1 + G A rs377178162 64807692 + 64807672 64807712 41 ACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGT ACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGT < 41bp 0.752983625623136 0.525282352091288 0.9069637 0.8577789 prediction 0.455402547063695 Functional Loss - ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807692 chr11:64807695 . . 0 24 hm5C_associated_SNPs_76538 0 0 0 4 64807687 64807709 mRNA hsa-let-7g SNX15 miRanda miRanda
6244 chr11 64807695 64807695 1 + G A rs377178162 64807692 + 64807672 64807712 41 ACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGT ACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGT < 41bp 0.752983625623136 0.525282352091288 0.9069637 0.8577789 prediction 0.455402547063695 Functional Loss - ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807692 chr11:64807695 . . 0 24 hm5C_associated_SNPs_76538 0 0 0 4 64807687 64807709 mRNA hsa-let-7i SNX15 miRanda miRanda
6245 chr10 66585931 66585931 1 + G T LIHC 66585929 + 66585909 66585949 41 TGCCCGGGATTTCTGTGATGCTGGAGTGAAGAGGAAAAGAA TGCCCGGGATTTCTGTGATGCTTGAGTGAAGAGGAAAAGAA < 41bp 0.864066805279525 0.636431262900547 0.26058507 0.0758965 prediction 0.455271084757957 Functional Loss - ANXA2P3 ENSG00000216740 ncRNA_exonic Human processed_pseudogene chr10:66585929 chr10:66585931 . . 0 23 hm5C_associated_SNPs_76590 0 0 0 1 66585910 66585933 mRNA hsa-miR-338-3p ANXA2P3 miRanda miRanda
6246 chr13 22277446 22277446 1 + G T rs180941441 22277443 + 22277423 22277463 41 TGAGTGACAGCTGTTATGAGCTAGAAGCGCATGACTTATTG TGAGTGACAGCTGTTATGAGCTATAAGCGCATGACTTATTG < 41bp 0.727617462176752 0.397723679100769 0.20432884 0.20507783 prediction 0.455234924353503 Functional Loss - FGF9 ENSG00000102678 UTR3 Human protein_coding chr13:22277443 chr13:22277446 . . 0 24 hm5C_associated_SNPs_76606 0 0 0 2 22277432 22277455 mRNA hsa-miR-135a FGF9 miRanda miRanda
6247 chr13 22277446 22277446 1 + G T rs180941441 22277443 + 22277423 22277463 41 TGAGTGACAGCTGTTATGAGCTAGAAGCGCATGACTTATTG TGAGTGACAGCTGTTATGAGCTATAAGCGCATGACTTATTG < 41bp 0.727617462176752 0.397723679100769 0.20432884 0.20507783 prediction 0.455234924353503 Functional Loss - FGF9 ENSG00000102678 UTR3 Human protein_coding chr13:22277443 chr13:22277446 . . 0 24 hm5C_associated_SNPs_76606 0 0 0 2 22277432 22277455 mRNA hsa-miR-135b FGF9 miRanda miRanda
6248 chr19 39600718 39600718 1 + G T OV 39600716 + 39600696 39600736 41 GGGAAGATCGTAGATGATGTCTGGGTGGTGAGACCCCTGTT GGGAAGATCGTAGATGATGTCTTGGTGGTGAGACCCCTGTT < 41bp 0.894038803238806 0.666437330747825 0.55204743 0.10153365 prediction 0.455202944981961 Functional Loss - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39600716 chr19:39600718 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_76614 0 0 0 1 39600709 39600727 mRNA hsa-miR-197 PAPL miRanda miRanda
6249 chr19 53960302 53960302 1 + G T UCEC 53960299 + 53960279 53960319 41 TTCGCACCTGGCACAACATGCTAGAATTCACACTGGAGAGA TTCGCACCTGGCACAACATGCTATAATTCACACTGGAGAGA < 41bp 0.727553898016484 0.363094108126821 0.097560674 0.06484443 prediction 0.455107796032969 Functional Loss - ZNF761;ZNF765-ZNF761 ENSG00000160336 ncRNA_exonic Human protein_coding chr19:53960299 chr19:53960302 . . 0 24 hm5C_associated_SNPs_76646 0 0 1 3 53960292 53960315 mRNA hsa-miR-199a-5p ZNF761 miRanda miRanda
6250 chr19 53960302 53960302 1 + G T UCEC 53960299 + 53960279 53960319 41 TTCGCACCTGGCACAACATGCTAGAATTCACACTGGAGAGA TTCGCACCTGGCACAACATGCTATAATTCACACTGGAGAGA < 41bp 0.727553898016484 0.363094108126821 0.097560674 0.06484443 prediction 0.455107796032969 Functional Loss - ZNF761;ZNF765-ZNF761 ENSG00000160336 ncRNA_exonic Human protein_coding chr19:53960299 chr19:53960302 . . 0 24 hm5C_associated_SNPs_76646 0 0 1 3 53960292 53960315 mRNA hsa-miR-199b-5p ZNF761 miRanda miRanda
6251 chr19 53960302 53960302 1 + G T UCEC 53960299 + 53960279 53960319 41 TTCGCACCTGGCACAACATGCTAGAATTCACACTGGAGAGA TTCGCACCTGGCACAACATGCTATAATTCACACTGGAGAGA < 41bp 0.727553898016484 0.363094108126821 0.097560674 0.06484443 prediction 0.455107796032969 Functional Loss - ZNF761;ZNF765-ZNF761 ENSG00000160336 ncRNA_exonic Human protein_coding chr19:53960299 chr19:53960302 . . 0 24 hm5C_associated_SNPs_76646 0 0 1 3 53960283 53960305 mRNA hsa-miR-544 ZNF761 miRanda miRanda
6252 chr3 40469254 40469254 1 + G T rs6773917 40469251 + 40469231 40469271 41 GGAACAGAGAAGAGACAGGCCACGAAGGTCAGGCTCTTTAT GGAACAGAGAAGAGACAGGCCACTAAGGTCAGGCTCTTTAT < 41bp 0.911039261141229 0.68352837259995 0.037863135 0.03886512 prediction 0.455021777082558 Functional Loss - ENTPD3-AS1 ENSG00000223797 ncRNA_intronic Human antisense chr3:40469251 chr3:40469254 . . 0 24 hm5C_associated_SNPs_76683 0 0 0 1 40469253 40469273 mRNA hsa-miR-340 ENTPD3 miRanda miRanda
6253 chr15 78462403 78462403 1 + A C rs11072733 78462402 + 78462382 78462422 41 ACCAGTATAAGATGACATTCCAAAGACTGGAGGCAACTCAG ACCAGTATAAGATGACATTCCCAAGACTGGAGGCAACTCAG < 41bp 0.781048361772985 0.553564817375538 0.3075152 0.33768147 prediction 0.454967088794893 Functional Loss - IDH3A ENSG00000103740;ENSG00000166411 UTR3 Human other chr15:78462402 chr15:78462403 . . 0 22 hm5C_associated_SNPs_76713 0 0 0 3 78462382 78462403 mRNA hsa-miR-1 IDH3A miRanda miRanda
6254 chr15 78462403 78462403 1 + A C rs11072733 78462402 + 78462382 78462422 41 ACCAGTATAAGATGACATTCCAAAGACTGGAGGCAACTCAG ACCAGTATAAGATGACATTCCCAAGACTGGAGGCAACTCAG < 41bp 0.781048361772985 0.553564817375538 0.3075152 0.33768147 prediction 0.454967088794893 Functional Loss - IDH3A ENSG00000103740;ENSG00000166411 UTR3 Human other chr15:78462402 chr15:78462403 . . 0 22 hm5C_associated_SNPs_76713 0 0 0 3 78462382 78462403 mRNA hsa-miR-206 IDH3A miRanda miRanda
6255 chr15 78462403 78462403 1 + A C rs11072733 78462402 + 78462382 78462422 41 ACCAGTATAAGATGACATTCCAAAGACTGGAGGCAACTCAG ACCAGTATAAGATGACATTCCCAAGACTGGAGGCAACTCAG < 41bp 0.781048361772985 0.553564817375538 0.3075152 0.33768147 prediction 0.454967088794893 Functional Loss - IDH3A ENSG00000103740;ENSG00000166411 UTR3 Human other chr15:78462402 chr15:78462403 . . 0 22 hm5C_associated_SNPs_76713 0 0 0 3 78462386 78462403 mRNA hsa-miR-613 IDH3A miRanda miRanda
6256 chr1 236702362 236702362 1 + G A UCEC 236702359 + 236702339 236702379 41 AGAGAAAAGTCTTTTGAGATCGTGATTATGGTGCTGAAGGA AGAGAAAAGTCTTTTGAGATCGTAATTATGGTGCTGAAGGA < 41bp 0.748257956683906 0.520776610445082 0.2119512 0.08182874 prediction 0.454962692477648 Functional Loss - LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236702359 chr1:236702362 synonymous SNV . 0 24 hm5C_associated_SNPs_76715 0 0 1 3 236702353 236702374 mRNA hsa-miR-29a LGALS8 miRanda miRanda
6257 chr1 236702362 236702362 1 + G A UCEC 236702359 + 236702339 236702379 41 AGAGAAAAGTCTTTTGAGATCGTGATTATGGTGCTGAAGGA AGAGAAAAGTCTTTTGAGATCGTAATTATGGTGCTGAAGGA < 41bp 0.748257956683906 0.520776610445082 0.2119512 0.08182874 prediction 0.454962692477648 Functional Loss - LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236702359 chr1:236702362 synonymous SNV . 0 24 hm5C_associated_SNPs_76715 0 0 1 3 236702356 236702374 mRNA hsa-miR-29b LGALS8 miRanda miRanda
6258 chr1 236702362 236702362 1 + G A UCEC 236702359 + 236702339 236702379 41 AGAGAAAAGTCTTTTGAGATCGTGATTATGGTGCTGAAGGA AGAGAAAAGTCTTTTGAGATCGTAATTATGGTGCTGAAGGA < 41bp 0.748257956683906 0.520776610445082 0.2119512 0.08182874 prediction 0.454962692477648 Functional Loss - LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236702359 chr1:236702362 synonymous SNV . 0 24 hm5C_associated_SNPs_76715 0 0 1 3 236702351 236702374 mRNA hsa-miR-29c LGALS8 miRanda miRanda
6259 chr11 95564631 95564631 1 + C T rs187690283 95564629 + 95564609 95564649 41 AAACCAGGGGAGTTTTAAAGCCCGAGAAACCACACATAATC AAACCAGGGGAGTTTTAAAGCCTGAGAAACCACACATAATC < 41bp 0.792937680918718 0.565573734540463 0.11378214 0.029401422 prediction 0.45472789275651 Functional Loss - CEP57 ENSG00000166037 UTR3 Human protein_coding chr11:95564629 chr11:95564631 . . 0 23 hm5C_associated_SNPs_76790 0 0 1 1 95564628 95564650 mRNA hsa-miR-190 CEP57 miRanda miRanda
6260 chr6 160858111 160858111 1 + T C STAD 160858110 + 160858090 160858130 41 CTCTATATAGACTTTTTCATCTCGGGCGTGGTGGAACTGCC CTCTATATAGACTTTTTCATCCCGGGCGTGGTGGAACTGCC < 41bp 0.818218818870071 0.590897033137737 0.24721447 0.5010432 prediction 0.454643571464667 Functional Loss - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160858110 chr6:160858111 nonsynonymous SNV 0.955 3 22 hm5C_associated_SNPs_76817 0 0 0 1 160858093 160858113 mRNA hsa-miR-143 SLC22A3 miRanda miRanda
6261 chr6 105526589 105526589 1 + G A SKCM 105526586 + 105526566 105526606 41 TCACCTCAAGAAGCTTCCTCCACGAAGTCATCTATAGCACC TCACCTCAAGAAGCTTCCTCCACAAAGTCATCTATAGCACC < 41bp 0.731752322955783 0.504436701054526 0.39666054 0.07680762 prediction 0.454631243802513 Functional Loss - LIN28B ENSG00000187772 CDS Human protein_coding chr6:105526586 chr6:105526589 synonymous SNV . 0 24 hm5C_associated_SNPs_76822 0 0 1 1 105526569 105526589 mRNA hsa-miR-491-5p LIN28B miRanda miRanda
6262 chr17 78410018 78410018 1 + G A rs575745977 78410015 + 78409995 78410035 41 GTGAGAGCACACGTCCTCGTCTCGTTCCTGATCGAACGCGG GTGAGAGCACACGTCCTCGTCTCATTCCTGATCGAACGCGG < 41bp 0.764059015455552 0.536790762382875 0.14226961 0.15576324 prediction 0.454536506145352 Functional Loss - ENDOV ENSG00000173818 UTR3 Human protein_coding chr17:78410015 chr17:78410018 . . 0 24 hm5C_associated_SNPs_76845 0 0 0 2 78410007 78410028 mRNA hsa-miR-383 FLJ35220 miRanda miRanda
6263 chr17 78410018 78410018 1 + G A rs575745977 78410015 + 78409995 78410035 41 GTGAGAGCACACGTCCTCGTCTCGTTCCTGATCGAACGCGG GTGAGAGCACACGTCCTCGTCTCATTCCTGATCGAACGCGG < 41bp 0.764059015455552 0.536790762382875 0.14226961 0.15576324 prediction 0.454536506145352 Functional Loss - ENDOV ENSG00000173818 UTR3 Human protein_coding chr17:78410015 chr17:78410018 . . 0 24 hm5C_associated_SNPs_76845 0 0 0 2 78410004 78410025 mRNA hsa-miR-873 FLJ35220 miRanda miRanda
6264 chr11 47183130 47183130 1 + C T UCEC 47183128 + 47183108 47183148 41 CTGGAGACCTCTCCATCATTCCCGAAAAGTGGATGGAGAGA CTGGAGACCTCTCCATCATTCCTGAAAAGTGGATGGAGAGA < 41bp 0.72726636955275 0.455903671137191 0.22578266 0.12104857 prediction 0.454532739105501 Functional Loss - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47183128 chr11:47183130 stopgain 0.996 1 23 hm5C_associated_SNPs_76848 0 0 1 1 47183108 47183130 mRNA hsa-miR-1 C11orf49 miRanda miRanda
6265 chr6 131992466 131992466 1 + C T SARC 131992464 + 131992444 131992484 41 CCAAATCATTACACCATTGTCACGGTAAGTGCTTGACCCAG CCAAATCATTACACCATTGTCATGGTAAGTGCTTGACCCAG < 41bp 0.789625294303358 0.562453694175078 0.8391415 0.8305685 prediction 0.454343200256561 Functional Loss - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:131992464 chr6:131992466 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_76911 0 0 1 3 131992466 131992467 mRNA hsa-miR-134 ENPP3 miRanda miRanda
6266 chr6 131992466 131992466 1 + C T SARC 131992464 + 131992444 131992484 41 CCAAATCATTACACCATTGTCACGGTAAGTGCTTGACCCAG CCAAATCATTACACCATTGTCATGGTAAGTGCTTGACCCAG < 41bp 0.789625294303358 0.562453694175078 0.8391415 0.8305685 prediction 0.454343200256561 Functional Loss - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:131992464 chr6:131992466 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_76911 0 0 1 3 131992456 131992467 mRNA hsa-miR-381 ENPP3 miRanda miRanda
6267 chr6 131992466 131992466 1 + C T SARC 131992464 + 131992444 131992484 41 CCAAATCATTACACCATTGTCACGGTAAGTGCTTGACCCAG CCAAATCATTACACCATTGTCATGGTAAGTGCTTGACCCAG < 41bp 0.789625294303358 0.562453694175078 0.8391415 0.8305685 prediction 0.454343200256561 Functional Loss - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:131992464 chr6:131992466 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_76911 0 0 1 3 131992455 131992467 mRNA hsa-miR-300 ENPP3 miRanda miRanda
6268 chr1 33147357 33147357 1 - T G rs6659926 33147358 - 33147338 33147378 41 GATGTACTCTTCCAACCAGACAAGAGTGCCAGAAACTTGGC GATGTACTCTTCCAACCAGACCAGAGTGCCAGAAACTTGGC < 41bp 0.727036835226885 0.479809060713281 0.45148945 0.124905676 prediction 0.454073670453771 Functional Loss - RBBP4;SYNC ENSG00000162520;ENSG00000162521 UTR3 Human other chr1:33147358 chr1:33147357 . . 0 22 hm5C_associated_SNPs_76980 0 0 0 1 33147344 33147366 mRNA hsa-miR-544 SYNC miRanda miRanda
6269 chr3 119236143 119236143 1 + G T LUSC 119236140 + 119236120 119236160 41 AGAAGGATCGAAAGGCACTCCATGAGCTAAAACTGGAAGAG AGAAGGATCGAAAGGCACTCCATTAGCTAAAACTGGAAGAG < 41bp 0.727033425275738 0.337522287841983 0.07732996 0.055284888 prediction 0.454066850551476 Functional Loss - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119236140 chr3:119236143 stopgain 0.608 0 24 hm5C_associated_SNPs_76985 0 0 1 1 119236132 119236157 mRNA hsa-miR-145 C3orf1 miRanda miRanda
6270 chr9 35609437 35609437 1 + C T UCEC 35609435 + 35609415 35609455 41 AGCTGTGGTGGTGAACTCCCCACAAGGCTGGGCTGGGGAGC AGCTGTGGTGGTGAACTCCCCATAAGGCTGGGCTGGGGAGC < 41bp 0.727030796057059 0.459997670750918 0.18004033 0.13405222 prediction 0.454061592114118 Functional Loss - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35609435 chr9:35609437 stopgain 0.996 0 23 hm5C_associated_SNPs_76988 0 0 0 1 35609415 35609438 mRNA hsa-miR-491-5p TESK1 miRanda miRanda
6271 chrX 149814302 149814302 1 + C T CESC 149814299 + 149814279 149814319 41 AATAAACAAATTTCTAAACTCACCATTTATGATGCAAGACC AATAAACAAATTTCTAAACTCACTATTTATGATGCAAGACC < 41bp 0.726993755825216 0.497321301497549 0.19498497 0.30675498 prediction 0.453987511650432 Functional Loss - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149814299 chrX:149814302 synonymous SNV . 0 24 hm5C_associated_SNPs_77015 0 0 1 1 149814299 149814319 mRNA hsa-miR-431 MTM1 miRanda miRanda
6272 chr20 5990444 5990444 1 + G T GBM 5990441 + 5990421 5990461 41 TATGAAAACCCATGGACAATCCCGAATATGTTGTCAATGAC TATGAAAACCCATGGACAATCCCTAATATGTTGTCAATGAC < 41bp 0.72687908236523 0.348098083293481 0.2554171 0.117923945 prediction 0.453758164730459 Functional Loss - CRLS1 ENSG00000088766 CDS Human protein_coding chr20:5990441 chr20:5990444 synonymous SNV . 0 24 hm5C_associated_SNPs_77084 0 0 1 1 5990434 5990456 mRNA hsa-miR-494 CRLS1 miRanda miRanda
6273 chr20 5990443 5990443 1 + C T LUSC 5990441 + 5990421 5990461 41 TATGAAAACCCATGGACAATCCCGAATATGTTGTCAATGAC TATGAAAACCCATGGACAATCCTGAATATGTTGTCAATGAC < 41bp 0.72687908236523 0.435469316872725 0.2554171 0.24370605 prediction 0.453758164730459 Functional Loss - CRLS1 ENSG00000088766 CDS Human protein_coding chr20:5990441 chr20:5990443 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_77085 0 0 1 1 5990434 5990456 mRNA hsa-miR-494 CRLS1 miRanda miRanda
6274 chr11 36669597 36669597 1 + G T UCEC 36669595 + 36669575 36669615 41 TGCTTCCAGGAGAAGTGGAGCAGGATGTAAGCACCAGCATT TGCTTCCAGGAGAAGTGGAGCATGATGTAAGCACCAGCATT < 41bp 0.726878778474129 0.385248405943007 0.8925342 0.8309537 prediction 0.453757556948257 Functional Loss - C11orf74 ENSG00000166352 CDS Human protein_coding chr11:36669595 chr11:36669597 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_77088 0 0 0 2 36669586 36669607 mRNA hsa-miR-222 C11orf74 miRanda miRanda
6275 chr11 36669597 36669597 1 + G T UCEC 36669595 + 36669575 36669615 41 TGCTTCCAGGAGAAGTGGAGCAGGATGTAAGCACCAGCATT TGCTTCCAGGAGAAGTGGAGCATGATGTAAGCACCAGCATT < 41bp 0.726878778474129 0.385248405943007 0.8925342 0.8309537 prediction 0.453757556948257 Functional Loss - C11orf74 ENSG00000166352 CDS Human protein_coding chr11:36669595 chr11:36669597 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_77088 0 0 0 2 36669592 36669613 mRNA hsa-miR-138 C11orf74 miRanda miRanda
6276 chr1 150307438 150307438 1 + C T LIHC 150307435 + 150307415 150307455 41 GTTAAAAGACCAAACGAAACCTACACCACTGATCCTGGATG GTTAAAAGACCAAACGAAACCTATACCACTGATCCTGGATG < 41bp 0.728314856114745 0.501518521900358 0.1355538 0.09959754 prediction 0.453592668428773 Functional Loss - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150307435 chr1:150307438 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_77141 0 0 1 1 150307424 150307445 mRNA hsa-miR-140-5p PRPF3 miRanda miRanda
6277 chr2 27279587 27279587 1 + G A BLCA 27279584 + 27279564 27279604 41 CAGAGAAGAATATGTATGCCCGAGACCGTAGAGATGGCCAG CAGAGAAGAATATGTATGCCCGAAACCGTAGAGATGGCCAG < 41bp 0.758143167534535 0.531509158397707 0.14532664 0.12031153 prediction 0.453268018273657 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27279584 chr2:27279587 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_77267 0 0 1 2 27279585 27279606 mRNA hsa-miR-193a-3p AGBL5 miRanda miRanda
6278 chr2 27279587 27279587 1 + G A BLCA 27279584 + 27279564 27279604 41 CAGAGAAGAATATGTATGCCCGAGACCGTAGAGATGGCCAG CAGAGAAGAATATGTATGCCCGAAACCGTAGAGATGGCCAG < 41bp 0.758143167534535 0.531509158397707 0.14532664 0.12031153 prediction 0.453268018273657 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27279584 chr2:27279587 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_77267 0 0 1 2 27279582 27279606 mRNA hsa-miR-193b AGBL5 miRanda miRanda
6279 chr19 53950534 53950534 1 + C T SKCM 53950532 + 53950512 53950552 41 GGAGTCAGGGATGGCTTTTTCTCAGGTGAGATGATATTTTC GGAGTCAGGGATGGCTTTTTCTTAGGTGAGATGATATTTTC < 41bp 0.812228051339267 0.585599624065238 0.23177081 0.24697793 prediction 0.453256854548058 Functional Loss - ZNF761;ZNF765-ZNF761 ENSG00000160336 ncRNA_exonic Human protein_coding chr19:53950532 chr19:53950534 . 0.013 0 23 hm5C_associated_SNPs_77269 0 0 1 3 53950518 53950536 mRNA hsa-miR-125b ZNF761 miRanda miRanda
6280 chr19 53950534 53950534 1 + C T SKCM 53950532 + 53950512 53950552 41 GGAGTCAGGGATGGCTTTTTCTCAGGTGAGATGATATTTTC GGAGTCAGGGATGGCTTTTTCTTAGGTGAGATGATATTTTC < 41bp 0.812228051339267 0.585599624065238 0.23177081 0.24697793 prediction 0.453256854548058 Functional Loss - ZNF761;ZNF765-ZNF761 ENSG00000160336 ncRNA_exonic Human protein_coding chr19:53950532 chr19:53950534 . 0.013 0 23 hm5C_associated_SNPs_77269 0 0 1 3 53950516 53950536 mRNA hsa-miR-125a-5p ZNF761 miRanda miRanda
6281 chr19 53950534 53950534 1 + C T SKCM 53950532 + 53950512 53950552 41 GGAGTCAGGGATGGCTTTTTCTCAGGTGAGATGATATTTTC GGAGTCAGGGATGGCTTTTTCTTAGGTGAGATGATATTTTC < 41bp 0.812228051339267 0.585599624065238 0.23177081 0.24697793 prediction 0.453256854548058 Functional Loss - ZNF761;ZNF765-ZNF761 ENSG00000160336 ncRNA_exonic Human protein_coding chr19:53950532 chr19:53950534 . 0.013 0 23 hm5C_associated_SNPs_77269 0 0 1 3 53950520 53950536 mRNA hsa-miR-504 ZNF761 miRanda miRanda
6282 chr3 158369945 158369945 1 + G T GBM 158369943 + 158369923 158369963 41 GGGCGGCGGCCACTGACCACCGGCAGGAGCTAATTGAATGT GGGCGGCGGCCACTGACCACCGTCAGGAGCTAATTGAATGT < 41bp 0.890760041460913 0.66415668312142 0.38925987 0.20712748 prediction 0.453206716678987 Functional Loss - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158369943 chr3:158369945 synonymous SNV . 0 23 hm5C_associated_SNPs_77284 0 0 1 4 158369937 158369964 mRNA hsa-miR-181a GFM1 miRanda miRanda
6283 chr3 158369945 158369945 1 + G T GBM 158369943 + 158369923 158369963 41 GGGCGGCGGCCACTGACCACCGGCAGGAGCTAATTGAATGT GGGCGGCGGCCACTGACCACCGTCAGGAGCTAATTGAATGT < 41bp 0.890760041460913 0.66415668312142 0.38925987 0.20712748 prediction 0.453206716678987 Functional Loss - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158369943 chr3:158369945 synonymous SNV . 0 23 hm5C_associated_SNPs_77284 0 0 1 4 158369937 158369964 mRNA hsa-miR-181b GFM1 miRanda miRanda
6284 chr3 158369945 158369945 1 + G T GBM 158369943 + 158369923 158369963 41 GGGCGGCGGCCACTGACCACCGGCAGGAGCTAATTGAATGT GGGCGGCGGCCACTGACCACCGTCAGGAGCTAATTGAATGT < 41bp 0.890760041460913 0.66415668312142 0.38925987 0.20712748 prediction 0.453206716678987 Functional Loss - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158369943 chr3:158369945 synonymous SNV . 0 23 hm5C_associated_SNPs_77284 0 0 1 4 158369937 158369964 mRNA hsa-miR-181c GFM1 miRanda miRanda
6285 chr3 158369945 158369945 1 + G T GBM 158369943 + 158369923 158369963 41 GGGCGGCGGCCACTGACCACCGGCAGGAGCTAATTGAATGT GGGCGGCGGCCACTGACCACCGTCAGGAGCTAATTGAATGT < 41bp 0.890760041460913 0.66415668312142 0.38925987 0.20712748 prediction 0.453206716678987 Functional Loss - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158369943 chr3:158369945 synonymous SNV . 0 23 hm5C_associated_SNPs_77284 0 0 1 4 158369937 158369964 mRNA hsa-miR-181d GFM1 miRanda miRanda
6286 chr11 118406159 118406159 1 + G A rs184827825 118406156 + 118406136 118406176 41 AGCCCTCTTTGTGGCTTCCCCACGTTTGGCCTTCTGGGATT AGCCCTCTTTGTGGCTTCCCCACATTTGGCCTTCTGGGATT < 41bp 0.734513411119381 0.507936687559819 0.1498647 0.0307087 prediction 0.453153447119123 Functional Loss - TMEM25 ENSG00000149582 UTR3 Human protein_coding chr11:118406156 chr11:118406159 . . 0 24 hm5C_associated_SNPs_77299 0 0 1 1 118406139 118406159 mRNA hsa-miR-491-5p TMEM25 miRanda miRanda
6287 chr21 40752355 40752355 1 + C T rs536050361 40752353 + 40752333 40752373 41 ACTGGGCGTGGTTGCTGGTGCTCAGCTTCGTGTTTGGATGC ACTGGGCGTGGTTGCTGGTGCTTAGCTTCGTGTTTGGATGC < 41bp 0.747850204850587 0.521276500979651 0.075237095 0.08571094 prediction 0.453147407741871 Functional Loss - WRB;WRB-SH3BGR ENSG00000182093 CDS Human protein_coding chr21:40752353 chr21:40752355 synonymous SNV . 0 23 hm5C_associated_SNPs_77304 0 0 1 3 40752334 40752355 mRNA hsa-miR-29a WRB miRanda miRanda
6288 chr21 40752355 40752355 1 + C T rs536050361 40752353 + 40752333 40752373 41 ACTGGGCGTGGTTGCTGGTGCTCAGCTTCGTGTTTGGATGC ACTGGGCGTGGTTGCTGGTGCTTAGCTTCGTGTTTGGATGC < 41bp 0.747850204850587 0.521276500979651 0.075237095 0.08571094 prediction 0.453147407741871 Functional Loss - WRB;WRB-SH3BGR ENSG00000182093 CDS Human protein_coding chr21:40752353 chr21:40752355 synonymous SNV . 0 23 hm5C_associated_SNPs_77304 0 0 1 3 40752336 40752355 mRNA hsa-miR-29b WRB miRanda miRanda
6289 chr21 40752355 40752355 1 + C T rs536050361 40752353 + 40752333 40752373 41 ACTGGGCGTGGTTGCTGGTGCTCAGCTTCGTGTTTGGATGC ACTGGGCGTGGTTGCTGGTGCTTAGCTTCGTGTTTGGATGC < 41bp 0.747850204850587 0.521276500979651 0.075237095 0.08571094 prediction 0.453147407741871 Functional Loss - WRB;WRB-SH3BGR ENSG00000182093 CDS Human protein_coding chr21:40752353 chr21:40752355 synonymous SNV . 0 23 hm5C_associated_SNPs_77304 0 0 1 3 40752337 40752355 mRNA hsa-miR-29c WRB miRanda miRanda
6290 chr19 2918343 2918343 1 + C T rs113742858 2918341 + 2918321 2918361 41 ACATTAATTCATGTATAATGCTCCAGAAAATTCACACCAGG ACATTAATTCATGTATAATGCTTCAGAAAATTCACACCAGG < 41bp 0.761602741025358 0.535055808567343 0.35009125 0.04741189 prediction 0.453093864916031 Functional Loss - ZNF57 ENSG00000253392 ncRNA_intronic Human antisense chr19:2918341 chr19:2918343 . . 0 23 hm5C_associated_SNPs_77320 0 0 1 2 2918318 2918343 mRNA hsa-miR-21 ZNF57 miRanda miRanda
6291 chr19 2918343 2918343 1 + C T rs113742858 2918341 + 2918321 2918361 41 ACATTAATTCATGTATAATGCTCCAGAAAATTCACACCAGG ACATTAATTCATGTATAATGCTTCAGAAAATTCACACCAGG < 41bp 0.761602741025358 0.535055808567343 0.35009125 0.04741189 prediction 0.453093864916031 Functional Loss - ZNF57 ENSG00000253392 ncRNA_intronic Human antisense chr19:2918341 chr19:2918343 . . 0 23 hm5C_associated_SNPs_77320 0 0 1 2 2918319 2918343 mRNA hsa-miR-590-5p ZNF57 miRanda miRanda
6292 chr3 190127816 190127816 1 + A C LGG 190127815 + 190127795 190127835 41 CAAAATGTATGCTGTAGACACAAGGGTGTAAAATGCACGTT CAAAATGTATGCTGTAGACACCAGGGTGTAAAATGCACGTT < 41bp 0.794093181114081 0.567580626155555 0.8991539 0.82725286 prediction 0.453025109917052 Functional Loss - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190127815 chr3:190127816 synonymous SNV . 0 22 hm5C_associated_SNPs_77344 0 0 0 1 190127796 190127818 mRNA hsa-miR-599 CLDN16 miRanda miRanda
6293 chr10 105885648 105885648 1 + C T rs559170563 105885646 + 105885626 105885666 41 CAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAG CAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGATTACAG < 41bp 0.775831968596885 0.549322000150908 0.3889816 0.2933429 prediction 0.453019936891953 Functional Loss - SFR1 ENSG00000156384 UTR3 Human protein_coding chr10:105885646 chr10:105885648 . . 0 23 hm5C_associated_SNPs_77348 0 0 0 1 105885642 105885663 mRNA hsa-miR-216a C10orf78 miRanda miRanda
6294 chr14 76668066 76668066 1 + G T OV 76668064 + 76668044 76668084 41 TGCAGTGGAGCCAACCACACCAGCATCACAAGCCCCCAAAT TGCAGTGGAGCCAACCACACCATCATCACAAGCCCCCAAAT < 41bp 0.726481266786256 0.387495682524138 0.0670535 0.004723698 prediction 0.452962533572511 Functional Loss - GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76668064 chr14:76668066 nonsynonymous SNV 0.284 0 23 hm5C_associated_SNPs_77363 0 0 1 1 76668046 76668068 mRNA hsa-miR-138 C14orf118 miRanda miRanda
6295 chr9 138454732 138454732 1 + G A COAD 138454729 + 138454709 138454749 41 ACTGAGAATCCAAAGAAGTTCAAGATCAACTGTGAGTGTCC ACTGAGAATCCAAAGAAGTTCAAAATCAACTGTGAGTGTCC < 41bp 0.726462925852714 0.492448030556846 0.33226296 0.27011514 prediction 0.452925851705428 Functional Loss - PAEP ENSG00000122133 CDS Human protein_coding chr9:138454729 chr9:138454732 synonymous SNV . 0 24 hm5C_associated_SNPs_77377 0 0 0 1 138454722 138454739 mRNA hsa-miR-223 PAEP miRanda miRanda
6296 chr1 77510113 77510113 1 + G A SKCM 77510110 + 77510090 77510130 41 AACCGCCATGACCTGCTCAACGTGAGCCAGGGCACCGTGTT AACCGCCATGACCTGCTCAACGTAAGCCAGGGCACCGTGTT < 41bp 0.765877635628772 0.539434664079019 0.14998049 0.13124105 prediction 0.452885943099505 Functional Loss - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77510110 chr1:77510113 synonymous SNV . 0 24 hm5C_associated_SNPs_77394 0 0 0 2 77510096 77510118 mRNA hsa-miR-24 ST6GALNAC5 miRanda miRanda
6297 chr1 77510113 77510113 1 + G A SKCM 77510110 + 77510090 77510130 41 AACCGCCATGACCTGCTCAACGTGAGCCAGGGCACCGTGTT AACCGCCATGACCTGCTCAACGTAAGCCAGGGCACCGTGTT < 41bp 0.765877635628772 0.539434664079019 0.14998049 0.13124105 prediction 0.452885943099505 Functional Loss - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77510110 chr1:77510113 synonymous SNV . 0 24 hm5C_associated_SNPs_77394 0 0 0 2 77510103 77510124 mRNA hsa-miR-874 ST6GALNAC5 miRanda miRanda
6298 chr4 81207633 81207633 1 + G A UCEC 81207630 + 81207610 81207650 41 AGCCAAACGAGGGTGCAGCCCCCGGGTTAAACCCCAGCATA AGCCAAACGAGGGTGCAGCCCCCAGGTTAAACCCCAGCATA < 41bp 0.752170250490431 0.525753166742953 0.75280625 0.24131796 prediction 0.452834167494956 Functional Loss - FGF5 ENSG00000138675 CDS Human protein_coding chr4:81207630 chr4:81207633 nonsynonymous SNV 0.895 5 24 hm5C_associated_SNPs_77411 0 0 0 1 81207629 81207650 mRNA hsa-miR-299-3p FGF5 miRanda miRanda
6299 chr19 1271983 1271983 1 + G A HNSC 1271980 + 1271960 1272000 41 AACGTTTGTCTGTCTTGCAGCCGGAGTCAGAGTGGTGGCTA AACGTTTGTCTGTCTTGCAGCCGAAGTCAGAGTGGTGGCTA < 41bp 0.784412691319188 0.558133985643315 0.79495645 0.20235804 prediction 0.452557411351746 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1271980 chr19:1271983 synonymous SNV . 0 24 hm5C_associated_SNPs_77505 0 0 1 4 1271980 1272000 mRNA hsa-miR-29a CIRBP miRanda miRanda
6300 chr19 1271983 1271983 1 + G A HNSC 1271980 + 1271960 1272000 41 AACGTTTGTCTGTCTTGCAGCCGGAGTCAGAGTGGTGGCTA AACGTTTGTCTGTCTTGCAGCCGAAGTCAGAGTGGTGGCTA < 41bp 0.784412691319188 0.558133985643315 0.79495645 0.20235804 prediction 0.452557411351746 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1271980 chr19:1271983 synonymous SNV . 0 24 hm5C_associated_SNPs_77505 0 0 1 4 1271977 1272000 mRNA hsa-miR-29a CIRBP miRanda miRanda
6301 chr19 1271983 1271983 1 + G A HNSC 1271980 + 1271960 1272000 41 AACGTTTGTCTGTCTTGCAGCCGGAGTCAGAGTGGTGGCTA AACGTTTGTCTGTCTTGCAGCCGAAGTCAGAGTGGTGGCTA < 41bp 0.784412691319188 0.558133985643315 0.79495645 0.20235804 prediction 0.452557411351746 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1271980 chr19:1271983 synonymous SNV . 0 24 hm5C_associated_SNPs_77505 0 0 1 4 1271980 1272000 mRNA hsa-miR-29c CIRBP miRanda miRanda
6302 chr19 1271983 1271983 1 + G A HNSC 1271980 + 1271960 1272000 41 AACGTTTGTCTGTCTTGCAGCCGGAGTCAGAGTGGTGGCTA AACGTTTGTCTGTCTTGCAGCCGAAGTCAGAGTGGTGGCTA < 41bp 0.784412691319188 0.558133985643315 0.79495645 0.20235804 prediction 0.452557411351746 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1271980 chr19:1271983 synonymous SNV . 0 24 hm5C_associated_SNPs_77505 0 0 1 4 1271977 1272000 mRNA hsa-miR-29c CIRBP miRanda miRanda
6303 chr5 56526749 56526749 1 + A T SKCM 56526745 + 56526725 56526765 41 GTTATGATGTGAACCGTCGACGACACAACTCTTCAGATGGC GTTATGATGTGAACCGTCGACGACTCAACTCTTCAGATGGC < 41bp 0.726273465901908 0.392873540334248 0.25826108 0.12710953 prediction 0.452546931803815 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526745 chr5:56526749 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_77510 0 0 1 2 56526729 56526753 mRNA hsa-miR-375 GPBP1 miRanda miRanda
6304 chr5 56526749 56526749 1 + A T SKCM 56526745 + 56526725 56526765 41 GTTATGATGTGAACCGTCGACGACACAACTCTTCAGATGGC GTTATGATGTGAACCGTCGACGACTCAACTCTTCAGATGGC < 41bp 0.726273465901908 0.392873540334248 0.25826108 0.12710953 prediction 0.452546931803815 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526745 chr5:56526749 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_77510 0 0 1 2 56526735 56526753 mRNA hsa-miR-599 GPBP1 miRanda miRanda
6305 chr13 100038285 100038285 1 + G A rs75653253 100038282 + 100038262 100038302 41 GGGATGGAGAAGAACAACAGCAGGCTTCCTGGAGCCACATG GGGATGGAGAAGAACAACAGCAGACTTCCTGGAGCCACATG < 41bp 0.739977182090613 0.513847009498515 0.8539248 0.6841885 prediction 0.452260345184196 Functional Loss - UBAC2 ENSG00000134882 UTR3 Human protein_coding chr13:100038282 chr13:100038285 . . 0 24 hm5C_associated_SNPs_77608 0 0 1 1 100038265 100038286 mRNA hsa-miR-370 UBAC2 miRanda miRanda
6306 chr2 241534059 241534059 1 + G T LUSC 241534056 + 241534036 241534076 41 GTGGAGGAGGAGGAGTTCCTCAGGGAGTTTGACGAGCTCAC GTGGAGGAGGAGGAGTTCCTCAGTGAGTTTGACGAGCTCAC < 41bp 0.923755757994798 0.69767884750447 0.91586095 0.5161902 prediction 0.452153820980655 Functional Loss - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241534056 chr2:241534059 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_77643 0 0 1 2 241534038 241534061 mRNA hsa-miR-125b CAPN10 miRanda miRanda
6307 chr2 241534059 241534059 1 + G T LUSC 241534056 + 241534036 241534076 41 GTGGAGGAGGAGGAGTTCCTCAGGGAGTTTGACGAGCTCAC GTGGAGGAGGAGGAGTTCCTCAGTGAGTTTGACGAGCTCAC < 41bp 0.923755757994798 0.69767884750447 0.91586095 0.5161902 prediction 0.452153820980655 Functional Loss - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241534056 chr2:241534059 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_77643 0 0 1 2 241534036 241534061 mRNA hsa-miR-125a-5p CAPN10 miRanda miRanda
6308 chr19 8553643 8553643 1 + G C BLCA 8553642 + 8553622 8553662 41 GGGTGTGGCGTGGTTAAGTTCGAGTCGCCAGAGGTGGCCGA GGGTGTGGCGTGGTTAAGTTCCAGTCGCCAGAGGTGGCCGA < 41bp 0.876394956974713 0.650362266921759 0.4286657 0.2460686 prediction 0.452065380105909 Functional Loss - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8553642 chr19:8553643 nonsynonymous SNV 0.921 4 22 hm5C_associated_SNPs_77673 0 0 1 1 8553633 8553655 mRNA hsa-miR-330-5p HNRNPM miRanda miRanda
6309 chr4 158257612 158257612 1 + C T PRAD 158257610 + 158257590 158257630 41 TCTCAAAGCCCTTCATGAGCCTCGGGATATCTATCATGATC TCTCAAAGCCCTTCATGAGCCTTGGGATATCTATCATGATC < 41bp 0.725922757301463 0.44664429924031 0.020643055 0.018746078 prediction 0.451845514602926 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158257610 chr4:158257612 synonymous SNV . 0 23 hm5C_associated_SNPs_77747 0 0 0 1 158257608 158257629 mRNA hsa-miR-433 GRIA2 miRanda miRanda
6310 chr2 27278661 27278661 1 + T C rs201486305 27278660 + 27278640 27278680 41 TCTCTACCACCATGTGCACTCTCGTCTGAACTCCCAGAGTT TCTCTACCACCATGTGCACTCCCGTCTGAACTCCCAGAGTT < 41bp 0.725920390189948 0.471086906816138 0.16871843 0.19492522 prediction 0.451840780379897 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27278660 chr2:27278661 synonymous SNV . 0 22 hm5C_associated_SNPs_77750 0 0 1 2 27278658 27278679 mRNA hsa-miR-330-5p AGBL5 miRanda miRanda
6311 chr2 27278661 27278661 1 + T C rs201486305 27278660 + 27278640 27278680 41 TCTCTACCACCATGTGCACTCTCGTCTGAACTCCCAGAGTT TCTCTACCACCATGTGCACTCCCGTCTGAACTCCCAGAGTT < 41bp 0.725920390189948 0.471086906816138 0.16871843 0.19492522 prediction 0.451840780379897 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27278660 chr2:27278661 synonymous SNV . 0 22 hm5C_associated_SNPs_77750 0 0 1 2 27278660 27278679 mRNA hsa-miR-326 AGBL5 miRanda miRanda
6312 chr2 27278663 27278663 1 + G A LGG 27278660 + 27278640 27278680 41 TCTCTACCACCATGTGCACTCTCGTCTGAACTCCCAGAGTT TCTCTACCACCATGTGCACTCTCATCTGAACTCCCAGAGTT < 41bp 0.725920390189948 0.482336274813677 0.16871843 0.11977944 prediction 0.451840780379897 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27278660 chr2:27278663 nonsynonymous SNV 0.521 1 24 hm5C_associated_SNPs_77751 0 0 1 2 27278658 27278679 mRNA hsa-miR-330-5p AGBL5 miRanda miRanda
6313 chr2 27278663 27278663 1 + G A LGG 27278660 + 27278640 27278680 41 TCTCTACCACCATGTGCACTCTCGTCTGAACTCCCAGAGTT TCTCTACCACCATGTGCACTCTCATCTGAACTCCCAGAGTT < 41bp 0.725920390189948 0.482336274813677 0.16871843 0.11977944 prediction 0.451840780379897 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27278660 chr2:27278663 nonsynonymous SNV 0.521 1 24 hm5C_associated_SNPs_77751 0 0 1 2 27278660 27278679 mRNA hsa-miR-326 AGBL5 miRanda miRanda
6314 chr18 19209655 19209655 1 + C T rs192509712 19209653 + 19209633 19209673 41 AGTAGGGTACCGTCTGTTTACACGTCCAGTTAGGCTACAGT AGTAGGGTACCGTCTGTTTACATGTCCAGTTAGGCTACAGT < 41bp 0.736022034264848 0.510259280364319 0.113058865 0.12803942 prediction 0.45152550780106 Functional Loss - SNRPD1 ENSG00000167088 UTR3 Human protein_coding chr18:19209653 chr18:19209655 . . 0 23 hm5C_associated_SNPs_77856 0 0 1 1 19209636 19209660 mRNA hsa-miR-122 SNRPD1 miRanda miRanda
6315 chr4 155491688 155491688 1 + G A UCEC 155491685 + 155491665 155491705 41 TACTGGGGTGGACAGTACACCTGGGACATGGCAAAGCATGG TACTGGGGTGGACAGTACACCTGAGACATGGCAAAGCATGG < 41bp 0.725727496475855 0.495205976733527 0.71959656 0.36757487 prediction 0.45145499295171 Functional Loss - FGB ENSG00000171564 CDS Human protein_coding chr4:155491685 chr4:155491688 stopgain 0.966 1 24 hm5C_associated_SNPs_77883 0 0 1 1 155491666 155491689 mRNA hsa-miR-199a-5p FGB miRanda miRanda
6316 chr2 209353830 209353830 1 + G A LAML 209353827 + 209353807 209353847 41 CCTCACTCCTTCACTGGGCTCGGGTGGGAGATCCGCATGCA CCTCACTCCTTCACTGGGCTCGGATGGGAGATCCGCATGCA < 41bp 0.774777530069497 0.549102927719624 0.8925191 0.54932964 prediction 0.451349204699747 Functional Loss - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209353827 chr2:209353830 synonymous SNV . 0 24 hm5C_associated_SNPs_77914 0 0 0 1 209353809 209353830 mRNA hsa-miR-615-3p PTH2R miRanda miRanda
6317 chr1 2116433 2116433 1 - C T rs116408566 2116436 - 2116416 2116456 41 ACGCGGCCTCACACCGACTCCTCGGTGGACAGCAATAATGG ACGCGGCCTCACACCGACTCCTCAGTGGACAGCAATAATGG < 41bp 0.72563793023952 0.488057877932098 0.06672308 0.03792888 prediction 0.451275860479041 Functional Loss - PRKCZ ENSG00000067606 CDS Human protein_coding chr1:2116436 chr1:2116433 synonymous SNV . 0 24 hm5C_associated_SNPs_77945 0 0 0 1 2116419 2116441 mRNA hsa-miR-137 C1orf86 miRanda miRanda
6318 chr1 2116434 2116434 1 - G A CESC 2116436 - 2116416 2116456 41 ACGCGGCCTCACACCGACTCCTCGGTGGACAGCAATAATGG ACGCGGCCTCACACCGACTCCTTGGTGGACAGCAATAATGG < 41bp 0.72563793023952 0.463471945135243 0.06672308 0.031211108 prediction 0.451275860479041 Functional Loss - PRKCZ ENSG00000067606 CDS Human protein_coding chr1:2116436 chr1:2116434 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_77946 0 0 0 1 2116419 2116441 mRNA hsa-miR-137 C1orf86 miRanda miRanda
6319 chr9 4860569 4860569 1 + G A rs1260073 4860566 + 4860546 4860586 41 AGTCGTGCTGCTAGAACAGTCTCGTAGCTGCAGTTCAGCTG AGTCGTGCTGCTAGAACAGTCTCATAGCTGCAGTTCAGCTG < 41bp 0.761462263281201 0.535856584459693 0.15387443 0.12493491 prediction 0.451211357643017 Functional Loss - RCL1 ENSG00000120158 UTR3 Human protein_coding chr9:4860566 chr9:4860569 . . 0 24 hm5C_associated_SNPs_77964 0 0 1 1 4860568 4860589 mRNA hsa-miR-128 RCL1 miRanda miRanda
6320 chr8 133816130 133816130 1 + C T CHOL 133816128 + 133816108 133816148 41 GAACAAAACAGGGAGTAAACCTCGAACCAGCGCTAACAGCA GAACAAAACAGGGAGTAAACCTTGAACCAGCGCTAACAGCA < 41bp 0.869278057630284 0.643677951109308 0.90057874 0.50203294 prediction 0.451200213041951 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133816128 chr8:133816130 stopgain 0.996 1 23 hm5C_associated_SNPs_77968 0 0 1 1 133816129 133816152 mRNA hsa-miR-137 PHF20L1 miRanda miRanda
6321 chr10 28971145 28971145 1 + G A UCEC 28971142 + 28971122 28971162 41 CCCGTTTGCACTACAGCTTTCACGGACACCATTCCAAAAAG CCCGTTTGCACTACAGCTTTCACAGACACCATTCCAAAAAG < 41bp 0.725581271785479 0.488135363277168 0.203771 0.10940775 prediction 0.451162543570957 Functional Loss - BAMBI ENSG00000095739 CDS Human protein_coding chr10:28971142 chr10:28971145 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_77980 0 0 1 3 28971136 28971157 mRNA hsa-miR-1 BAMBI miRanda miRanda
6322 chr10 28971145 28971145 1 + G A UCEC 28971142 + 28971122 28971162 41 CCCGTTTGCACTACAGCTTTCACGGACACCATTCCAAAAAG CCCGTTTGCACTACAGCTTTCACAGACACCATTCCAAAAAG < 41bp 0.725581271785479 0.488135363277168 0.203771 0.10940775 prediction 0.451162543570957 Functional Loss - BAMBI ENSG00000095739 CDS Human protein_coding chr10:28971142 chr10:28971145 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_77980 0 0 1 3 28971136 28971157 mRNA hsa-miR-206 BAMBI miRanda miRanda
6323 chr10 28971145 28971145 1 + G A UCEC 28971142 + 28971122 28971162 41 CCCGTTTGCACTACAGCTTTCACGGACACCATTCCAAAAAG CCCGTTTGCACTACAGCTTTCACAGACACCATTCCAAAAAG < 41bp 0.725581271785479 0.488135363277168 0.203771 0.10940775 prediction 0.451162543570957 Functional Loss - BAMBI ENSG00000095739 CDS Human protein_coding chr10:28971142 chr10:28971145 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_77980 0 0 1 3 28971138 28971157 mRNA hsa-miR-613 BAMBI miRanda miRanda
6324 chr22 44602668 44602668 1 + C T rs550778121 44602666 + 44602646 44602686 41 CGCCCAGAGAGGTGGCATCACTCAGGGCTGGGGACTCTCAG CGCCCAGAGAGGTGGCATCACTTAGGGCTGGGGACTCTCAG < 41bp 0.727573267728865 0.502148482013952 0.32230148 0.35116887 prediction 0.450849571429826 Functional Loss - PARVG ENSG00000138964 UTR3 Human protein_coding chr22:44602666 chr22:44602668 . . 0 23 hm5C_associated_SNPs_78072 0 0 0 2 44602666 44602689 mRNA hsa-miR-125b PARVG miRanda miRanda
6325 chr22 44602668 44602668 1 + C T rs550778121 44602666 + 44602646 44602686 41 CGCCCAGAGAGGTGGCATCACTCAGGGCTGGGGACTCTCAG CGCCCAGAGAGGTGGCATCACTTAGGGCTGGGGACTCTCAG < 41bp 0.727573267728865 0.502148482013952 0.32230148 0.35116887 prediction 0.450849571429826 Functional Loss - PARVG ENSG00000138964 UTR3 Human protein_coding chr22:44602666 chr22:44602668 . . 0 23 hm5C_associated_SNPs_78072 0 0 0 2 44602666 44602689 mRNA hsa-miR-125a-5p PARVG miRanda miRanda
6326 chr1 13944185 13944185 1 + A C rs140776225 13944184 + 13944164 13944204 41 CCTCAGATTCCATATTTGAACACCAGCTGATTGAGAGAAGG CCTCAGATTCCATATTTGAACCCCAGCTGATTGAGAGAAGG < 41bp 0.731450960209672 0.506047130394915 0.17269716 0.11978546 prediction 0.450807659629514 Functional Loss - PDPN ENSG00000162493 UTR3 Human protein_coding chr1:13944184 chr1:13944185 . . 0 22 hm5C_associated_SNPs_78087 0 0 1 1 13944170 13944191 mRNA hsa-miR-138 PDPN miRanda miRanda
6327 chr2 37464951 37464951 1 + G T PAAD 37464949 + 37464929 37464969 41 GATGGCCACTGGAAAAAGCACAGCTTTCCAGCTGGTGGAAC GATGGCCACTGGAAAAAGCACATCTTTCCAGCTGGTGGAAC < 41bp 0.725345907835807 0.375635670098909 0.050920874 0.072203875 prediction 0.450691815671615 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37464949 chr2:37464951 nonsynonymous SNV 0.850 0 23 hm5C_associated_SNPs_78134 0 0 1 5 37464931 37464951 mRNA hsa-miR-218 C2orf56 miRanda miRanda
6328 chr2 37464951 37464951 1 + G T PAAD 37464949 + 37464929 37464969 41 GATGGCCACTGGAAAAAGCACAGCTTTCCAGCTGGTGGAAC GATGGCCACTGGAAAAAGCACATCTTTCCAGCTGGTGGAAC < 41bp 0.725345907835807 0.375635670098909 0.050920874 0.072203875 prediction 0.450691815671615 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37464949 chr2:37464951 nonsynonymous SNV 0.850 0 23 hm5C_associated_SNPs_78134 0 0 1 5 37464935 37464956 mRNA hsa-miR-320a C2orf56 miRanda miRanda
6329 chr2 37464951 37464951 1 + G T PAAD 37464949 + 37464929 37464969 41 GATGGCCACTGGAAAAAGCACAGCTTTCCAGCTGGTGGAAC GATGGCCACTGGAAAAAGCACATCTTTCCAGCTGGTGGAAC < 41bp 0.725345907835807 0.375635670098909 0.050920874 0.072203875 prediction 0.450691815671615 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37464949 chr2:37464951 nonsynonymous SNV 0.850 0 23 hm5C_associated_SNPs_78134 0 0 1 5 37464935 37464956 mRNA hsa-miR-320b C2orf56 miRanda miRanda
6330 chr2 37464951 37464951 1 + G T PAAD 37464949 + 37464929 37464969 41 GATGGCCACTGGAAAAAGCACAGCTTTCCAGCTGGTGGAAC GATGGCCACTGGAAAAAGCACATCTTTCCAGCTGGTGGAAC < 41bp 0.725345907835807 0.375635670098909 0.050920874 0.072203875 prediction 0.450691815671615 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37464949 chr2:37464951 nonsynonymous SNV 0.850 0 23 hm5C_associated_SNPs_78134 0 0 1 5 37464937 37464956 mRNA hsa-miR-320c C2orf56 miRanda miRanda
6331 chr2 37464951 37464951 1 + G T PAAD 37464949 + 37464929 37464969 41 GATGGCCACTGGAAAAAGCACAGCTTTCCAGCTGGTGGAAC GATGGCCACTGGAAAAAGCACATCTTTCCAGCTGGTGGAAC < 41bp 0.725345907835807 0.375635670098909 0.050920874 0.072203875 prediction 0.450691815671615 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37464949 chr2:37464951 nonsynonymous SNV 0.850 0 23 hm5C_associated_SNPs_78134 0 0 1 5 37464938 37464956 mRNA hsa-miR-320d C2orf56 miRanda miRanda
6332 chr16 54145685 54145685 1 + G A UCEC 54145682 + 54145662 54145702 41 TTACTCTTCCAGGTGCCAGTCACGAATTGCCCGAACATTAC TTACTCTTCCAGGTGCCAGTCACAAATTGCCCGAACATTAC < 41bp 0.727469296671096 0.502142272507082 0.036019385 0.036549896 prediction 0.450654048328027 Functional Loss - FTO ENSG00000140718 CDS Human protein_coding chr16:54145682 chr16:54145685 nonsynonymous SNV 0.871 0 24 hm5C_associated_SNPs_78152 0 0 0 1 54145674 54145685 mRNA hsa-miR-134 FTO miRanda miRanda
6333 chr6 31947235 31947235 1 + G T READ 31947233 + 31947213 31947253 41 GACCGTATGCTGGGGCAGTGCAGAAATTTCTAGCTTCAGTA GACCGTATGCTGGGGCAGTGCATAAATTTCTAGCTTCAGTA < 41bp 0.725325861801516 0.452190028718315 0.2656507 0.22131637 prediction 0.450651723603031 Functional Loss - STK19 ENSG00000204344 CDS Human protein_coding chr6:31947233 chr6:31947235 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_78154 0 0 1 1 31947215 31947238 mRNA hsa-miR-544 STK19 miRanda miRanda
6334 chr1 111999270 111999270 1 + G A CESC 111999267 + 111999247 111999287 41 TGTAGCAAAAACTTGCCCAACTAGAAGAGGCGAAGCAGGCT TGTAGCAAAAACTTGCCCAACTAAAAGAGGCGAAGCAGGCT < 41bp 0.750351217266365 0.525110369017305 0.1846818 0.39711466 prediction 0.45048169649812 Functional Loss - ATP5F1 ENSG00000116459 CDS Human protein_coding chr1:111999267 chr1:111999270 nonsynonymous SNV 0.975 1 24 hm5C_associated_SNPs_78212 0 0 1 2 111999264 111999289 mRNA hsa-miR-302a ATP5F1 miRanda miRanda
6335 chr1 111999270 111999270 1 + G A CESC 111999267 + 111999247 111999287 41 TGTAGCAAAAACTTGCCCAACTAGAAGAGGCGAAGCAGGCT TGTAGCAAAAACTTGCCCAACTAAAAGAGGCGAAGCAGGCT < 41bp 0.750351217266365 0.525110369017305 0.1846818 0.39711466 prediction 0.45048169649812 Functional Loss - ATP5F1 ENSG00000116459 CDS Human protein_coding chr1:111999267 chr1:111999270 nonsynonymous SNV 0.975 1 24 hm5C_associated_SNPs_78212 0 0 1 2 111999264 111999289 mRNA hsa-miR-302b ATP5F1 miRanda miRanda
6336 chr1 10067716 10067716 1 + G A UCEC 10067713 + 10067693 10067733 41 GGGGATTCTTTTACCATCCACACGAACAGCAGCCTAAGGAA GGGGATTCTTTTACCATCCACACAAACAGCAGCCTAAGGAA < 41bp 0.782540965522329 0.557448165044825 0.03491497 0.0069637 prediction 0.450185600955009 Functional Loss - RBP7 ENSG00000162444 CDS Human protein_coding chr1:10067713 chr1:10067716 synonymous SNV . 0 24 hm5C_associated_SNPs_78308 0 0 0 1 10067702 10067726 mRNA hsa-miR-370 RBP7 miRanda miRanda
6337 chr10 75676658 75676658 1 + G A rs185909762 75676655 + 75676635 75676675 41 GTGAAGGGAGAGCCAGCTCCCCCGACGGTGGGCATTTGTGA GTGAAGGGAGAGCCAGCTCCCCCAACGGTGGGCATTTGTGA < 41bp 0.762349934436198 0.53732844828972 0.087371856 0.06583738 prediction 0.450042972292956 Functional Loss - PLAU ENSG00000122861 UTR3 Human protein_coding chr10:75676655 chr10:75676658 . . 0 24 hm5C_associated_SNPs_78368 1 0 0 1 75676650 75676671 mRNA hsa-miR-365 PLAU miRanda miRanda
6338 chr6 40347082 40347082 1 + C T UCEC 40347080 + 40347060 40347100 41 GGGAGGCAGTCTGCGCGCACCGCCATTTTCTAGGAACTGGG GGGAGGCAGTCTGCGCGCACCGTCATTTTCTAGGAACTGGG < 41bp 0.725011548043087 0.488969880611224 0.55185664 0.12884772 prediction 0.450023096086174 Functional Loss - TDRG1 ENSG00000204091 ncRNA_exonic Human antisense chr6:40347080 chr6:40347082 . . 0 23 hm5C_associated_SNPs_78375 0 0 0 1 40347077 40347096 mRNA hsa-miR-384 TDRG1 miRanda miRanda
6339 chr3 119217606 119217606 1 + G A COAD 119217603 + 119217583 119217623 41 GGAGGTGCCGCCACCGGCACCGCGGAGCTTTCTCTGTAGAG GGAGGTGCCGCCACCGGCACCGCAGAGCTTTCTCTGTAGAG < 41bp 0.79719847032686 0.572244447207156 0.85587865 0.29917097 prediction 0.449908046239407 Functional Loss - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119217603 chr3:119217606 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_78410 0 0 1 1 119217606 119217628 mRNA hsa-miR-216b C3orf1 miRanda miRanda
6340 chr7 98935908 98935908 1 + G T UCEC 98935906 + 98935886 98935926 41 GGAGCACAACGGACACATCACAGGTAAAGGAAGATAGCCGT GGAGCACAACGGACACATCACATGTAAAGGAAGATAGCCGT < 41bp 0.724833238989106 0.370996596456986 0.40902072 0.05013439 prediction 0.449666477978213 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98935906 chr7:98935908 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_78496 0 0 0 2 98935891 98935908 mRNA hsa-miR-10a ARPC1A miRanda miRanda
6341 chr7 98935908 98935908 1 + G T UCEC 98935906 + 98935886 98935926 41 GGAGCACAACGGACACATCACAGGTAAAGGAAGATAGCCGT GGAGCACAACGGACACATCACATGTAAAGGAAGATAGCCGT < 41bp 0.724833238989106 0.370996596456986 0.40902072 0.05013439 prediction 0.449666477978213 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98935906 chr7:98935908 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_78496 0 0 0 2 98935891 98935908 mRNA hsa-miR-10b ARPC1A miRanda miRanda
6342 chr6 54173442 54173442 1 + G A SKCM 54173439 + 54173419 54173459 41 TATCTCAAAGAGAAGTGGACCTAGAGGCTTATTTCACTAGG TATCTCAAAGAGAAGTGGACCTAAAGGCTTATTTCACTAGG < 41bp 0.756179183446456 0.531384822945016 0.08515486 0.030487835 prediction 0.449588721002879 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54173439 chr6:54173442 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_78526 0 0 0 1 54173441 54173462 mRNA hsa-miR-384 TINAG miRanda miRanda
6343 chr22 19119536 19119536 1 - C T BRCA 19119539 - 19119519 19119559 41 TAGGGCATGGAGCCGCAGACCATGATGTACAGGATCACGCC TAGGGCATGGAGCCGCAGACCATAATGTACAGGATCACGCC < 41bp 0.758555261804866 0.533846617325824 0.37652257 0.33613956 prediction 0.449417288958084 Functional Loss - TSSK2 ENSG00000206203 CDS Human protein_coding chr22:19119539 chr22:19119536 synonymous SNV . 0 24 hm5C_associated_SNPs_78575 0 0 0 1 19119526 19119551 mRNA hsa-miR-486-5p DGCR14 miRanda miRanda
6344 chr3 158531837 158531837 1 + C T LUAD 158531835 + 158531815 158531855 41 GTTCTGCTGGTCACACAACCCTCGGGATCACACTTATGATT GTTCTGCTGGTCACACAACCCTTGGGATCACACTTATGATT < 41bp 0.837951157064467 0.613264436989506 0.033183634 0.026845992 prediction 0.449373440149922 Functional Loss - MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158531835 chr3:158531837 synonymous SNV . 0 23 hm5C_associated_SNPs_78601 0 0 1 1 158531816 158531837 mRNA hsa-miR-296-3p MFSD1 miRanda miRanda
6345 chr2 197511104 197511104 1 + C T LGG 197511102 + 197511082 197511122 41 AGTGTCCAGACCGGTCCTTTCTCCAACCCACATCAACGCTA AGTGTCCAGACCGGTCCTTTCTTCAACCCACATCAACGCTA < 41bp 0.724667928338176 0.428205381373935 0.9602436 0.052363545 prediction 0.449335856676352 Functional Loss - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197511102 chr2:197511104 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_78613 0 0 1 1 197511094 197511115 mRNA hsa-miR-299-3p CCDC150 miRanda miRanda
6346 chr17 15641669 15641669 1 + A C SKCM 15641668 + 15641648 15641688 41 TCACTTTTGCTAGATATTGACAGAATCAAGTCCCAGAACCC TCACTTTTGCTAGATATTGACCGAATCAAGTCCCAGAACCC < 41bp 0.724619881533217 0.450006034126004 0.8000084 0.42346588 prediction 0.449239763066434 Functional Loss - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15641668 chr17:15641669 synonymous SNV . 0 22 hm5C_associated_SNPs_78653 0 0 1 1 15641650 15641673 mRNA hsa-miR-544 TBC1D26 miRanda miRanda
6347 chrX 74516241 74516241 1 + C T LUSC 74516238 + 74516218 74516258 41 TAAAGAATGCATGGTGACCACTCCAACAGGTAACTAGGGCT TAAAGAATGCATGGTGACCACTCTAACAGGTAACTAGGGCT < 41bp 0.742230038592614 0.517796441829072 0.9612963 0.9440353 prediction 0.448867193527084 Functional Loss - UPRT ENSG00000094841 CDS Human protein_coding chrX:74516238 chrX:74516241 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_78787 0 0 0 3 74516228 74516246 mRNA hsa-miR-10a UPRT miRanda miRanda
6348 chrX 74516241 74516241 1 + C T LUSC 74516238 + 74516218 74516258 41 TAAAGAATGCATGGTGACCACTCCAACAGGTAACTAGGGCT TAAAGAATGCATGGTGACCACTCTAACAGGTAACTAGGGCT < 41bp 0.742230038592614 0.517796441829072 0.9612963 0.9440353 prediction 0.448867193527084 Functional Loss - UPRT ENSG00000094841 CDS Human protein_coding chrX:74516238 chrX:74516241 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_78787 0 0 0 3 74516228 74516246 mRNA hsa-miR-10b UPRT miRanda miRanda
6349 chrX 74516241 74516241 1 + C T LUSC 74516238 + 74516218 74516258 41 TAAAGAATGCATGGTGACCACTCCAACAGGTAACTAGGGCT TAAAGAATGCATGGTGACCACTCTAACAGGTAACTAGGGCT < 41bp 0.742230038592614 0.517796441829072 0.9612963 0.9440353 prediction 0.448867193527084 Functional Loss - UPRT ENSG00000094841 CDS Human protein_coding chrX:74516238 chrX:74516241 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_78787 0 0 0 3 74516221 74516242 mRNA hsa-miR-122 UPRT miRanda miRanda
6350 chr12 21531437 21531437 1 + C T rs5484 21531435 + 21531415 21531455 41 TTTAACAGTGCCCTTTTCATCTCCAGTGTGAATATATGGTC TTTAACAGTGCCCTTTTCATCTTCAGTGTGAATATATGGTC < 41bp 0.783261625274449 0.558867930192046 0.57251346 0.027705103 prediction 0.448787390164807 Functional Loss - IAPP ENSG00000121351 UTR3 Human protein_coding chr12:21531435 chr12:21531437 . . 0 23 hm5C_associated_SNPs_78817 0 0 0 2 21531414 21531438 mRNA hsa-miR-143 IAPP miRanda miRanda
6351 chr12 21531437 21531437 1 + C T rs5484 21531435 + 21531415 21531455 41 TTTAACAGTGCCCTTTTCATCTCCAGTGTGAATATATGGTC TTTAACAGTGCCCTTTTCATCTTCAGTGTGAATATATGGTC < 41bp 0.783261625274449 0.558867930192046 0.57251346 0.027705103 prediction 0.448787390164807 Functional Loss - IAPP ENSG00000121351 UTR3 Human protein_coding chr12:21531435 chr12:21531437 . . 0 23 hm5C_associated_SNPs_78817 0 0 0 2 21531415 21531439 mRNA hsa-miR-185 IAPP miRanda miRanda
6352 chr1 156180113 156180113 1 + C T BLCA 156180111 + 156180091 156180131 41 TGGGGCCTCATGAAGGGCCTCTCGGCCAGAATCATCTCAGC TGGGGCCTCATGAAGGGCCTCTTGGCCAGAATCATCTCAGC < 41bp 0.724377229612771 0.450183507486198 0.42106047 0.13375738 prediction 0.448754459225543 Functional Loss - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156180111 chr1:156180113 nonsynonymous SNV 0.940 3 23 hm5C_associated_SNPs_78829 0 0 1 1 156180109 156180129 mRNA hsa-miR-143 SLC25A44 miRanda miRanda
6353 chr6 131971248 131971248 1 + G C KIRC 131971244 + 131971224 131971264 41 GTGATGTGGCATGTAAAGACCGAGGTGATTGCTGCTGGGAT GTGATGTGGCATGTAAAGACCGAGCTGATTGCTGCTGGGAT < 41bp 0.724348785945184 0.429846987560095 0.88662624 0.5078205 prediction 0.448697571890369 Functional Loss - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:131971244 chr6:131971248 nonsynonymous SNV 0.558 2 25 hm5C_associated_SNPs_78853 0 0 1 6 131971237 131971260 mRNA hsa-miR-15a ENPP3 miRanda miRanda
6354 chr6 131971248 131971248 1 + G C KIRC 131971244 + 131971224 131971264 41 GTGATGTGGCATGTAAAGACCGAGGTGATTGCTGCTGGGAT GTGATGTGGCATGTAAAGACCGAGCTGATTGCTGCTGGGAT < 41bp 0.724348785945184 0.429846987560095 0.88662624 0.5078205 prediction 0.448697571890369 Functional Loss - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:131971244 chr6:131971248 nonsynonymous SNV 0.558 2 25 hm5C_associated_SNPs_78853 0 0 1 6 131971241 131971260 mRNA hsa-miR-16 ENPP3 miRanda miRanda
6355 chr6 131971248 131971248 1 + G C KIRC 131971244 + 131971224 131971264 41 GTGATGTGGCATGTAAAGACCGAGGTGATTGCTGCTGGGAT GTGATGTGGCATGTAAAGACCGAGCTGATTGCTGCTGGGAT < 41bp 0.724348785945184 0.429846987560095 0.88662624 0.5078205 prediction 0.448697571890369 Functional Loss - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:131971244 chr6:131971248 nonsynonymous SNV 0.558 2 25 hm5C_associated_SNPs_78853 0 0 1 6 131971237 131971260 mRNA hsa-miR-15b ENPP3 miRanda miRanda
6356 chr6 131971248 131971248 1 + G C KIRC 131971244 + 131971224 131971264 41 GTGATGTGGCATGTAAAGACCGAGGTGATTGCTGCTGGGAT GTGATGTGGCATGTAAAGACCGAGCTGATTGCTGCTGGGAT < 41bp 0.724348785945184 0.429846987560095 0.88662624 0.5078205 prediction 0.448697571890369 Functional Loss - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:131971244 chr6:131971248 nonsynonymous SNV 0.558 2 25 hm5C_associated_SNPs_78853 0 0 1 6 131971240 131971260 mRNA hsa-miR-195 ENPP3 miRanda miRanda
6357 chr6 131971248 131971248 1 + G C KIRC 131971244 + 131971224 131971264 41 GTGATGTGGCATGTAAAGACCGAGGTGATTGCTGCTGGGAT GTGATGTGGCATGTAAAGACCGAGCTGATTGCTGCTGGGAT < 41bp 0.724348785945184 0.429846987560095 0.88662624 0.5078205 prediction 0.448697571890369 Functional Loss - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:131971244 chr6:131971248 nonsynonymous SNV 0.558 2 25 hm5C_associated_SNPs_78853 0 0 1 6 131971236 131971260 mRNA hsa-miR-424 ENPP3 miRanda miRanda
6358 chr6 131971248 131971248 1 + G C KIRC 131971244 + 131971224 131971264 41 GTGATGTGGCATGTAAAGACCGAGGTGATTGCTGCTGGGAT GTGATGTGGCATGTAAAGACCGAGCTGATTGCTGCTGGGAT < 41bp 0.724348785945184 0.429846987560095 0.88662624 0.5078205 prediction 0.448697571890369 Functional Loss - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:131971244 chr6:131971248 nonsynonymous SNV 0.558 2 25 hm5C_associated_SNPs_78853 0 0 1 6 131971238 131971260 mRNA hsa-miR-497 ENPP3 miRanda miRanda
6359 chr2 85604584 85604584 1 + G A CESC 85604581 + 85604561 85604601 41 GCAGGAGATTTTCCGCCTGTCTCGTCACCACATCCAGGTGA GCAGGAGATTTTCCGCCTGTCTCATCACCACATCCAGGTGA < 41bp 0.724325446526817 0.483452541936086 0.37131384 0.22339591 prediction 0.448650893053633 Functional Loss - ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85604581 chr2:85604584 nonsynonymous SNV 0.958 0 24 hm5C_associated_SNPs_78865 0 0 1 1 85604573 85604597 mRNA hsa-miR-138 ELMOD3 miRanda miRanda
6360 chr15 52497193 52497193 1 + G A COAD 52497190 + 52497170 52497210 41 AGCTCGGGGTCCAGGCCGTTCTGGCACATGGTGGTGTAAAA AGCTCGGGGTCCAGGCCGTTCTGACACATGGTGGTGTAAAA < 41bp 0.762789928508906 0.53865868665372 0.16688839 0.13555789 prediction 0.448262483710373 Functional Loss - MYO5C ENSG00000128833 CDS Human protein_coding chr15:52497190 chr15:52497193 synonymous SNV . 0 24 hm5C_associated_SNPs_78984 0 0 0 1 52497180 52497199 mRNA hsa-miR-455-5p LOC100129973 miRanda miRanda
6361 chr7 104753587 104753587 1 + T C LIHC 104753586 + 104753566 104753606 41 TACCTGTCACAGGTCCTCATCTCCAGCCCCAAGGACCAAAC TACCTGTCACAGGTCCTCATCCCCAGCCCCAAGGACCAAAC < 41bp 0.72396795516195 0.450859206325175 0.91807073 0.11421755 prediction 0.447935910323901 Functional Loss - KMT2E ENSG00000005483 CDS Human protein_coding chr7:104753586 chr7:104753587 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_79093 0 0 1 3 104753584 104753605 mRNA hsa-miR-133a MLL5 miRanda miRanda
6362 chr7 104753587 104753587 1 + T C LIHC 104753586 + 104753566 104753606 41 TACCTGTCACAGGTCCTCATCTCCAGCCCCAAGGACCAAAC TACCTGTCACAGGTCCTCATCCCCAGCCCCAAGGACCAAAC < 41bp 0.72396795516195 0.450859206325175 0.91807073 0.11421755 prediction 0.447935910323901 Functional Loss - KMT2E ENSG00000005483 CDS Human protein_coding chr7:104753586 chr7:104753587 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_79093 0 0 1 3 104753569 104753589 mRNA hsa-miR-143 MLL5 miRanda miRanda
6363 chr7 104753587 104753587 1 + T C LIHC 104753586 + 104753566 104753606 41 TACCTGTCACAGGTCCTCATCTCCAGCCCCAAGGACCAAAC TACCTGTCACAGGTCCTCATCCCCAGCCCCAAGGACCAAAC < 41bp 0.72396795516195 0.450859206325175 0.91807073 0.11421755 prediction 0.447935910323901 Functional Loss - KMT2E ENSG00000005483 CDS Human protein_coding chr7:104753586 chr7:104753587 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_79093 0 0 1 3 104753584 104753605 mRNA hsa-miR-133b MLL5 miRanda miRanda
6364 chr17 42248205 42248205 1 + C T rs56265171 42248203 + 42248183 42248223 41 CCTCCTCCATGCTGCGCTCTCTCCGCCTGCAGCAGGAGTGG CCTCCTCCATGCTGCGCTCTCTTCGCCTGCAGCAGGAGTGG < 41bp 0.723958773575858 0.465216212052411 0.1720441 0.069542736 prediction 0.447917547151716 Functional Loss - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42248203 chr17:42248205 synonymous SNV . 0 23 hm5C_associated_SNPs_79102 0 0 0 1 42248197 42248219 mRNA hsa-miR-370 ASB16 miRanda miRanda
6365 chr10 6373217 6373217 1 + G A rs77984028 6373214 + 6373194 6373234 41 GGTTGAGAACTATTGTTCAACGCGAACTTCACATATGAAGC GGTTGAGAACTATTGTTCAACGCAAACTTCACATATGAAGC < 41bp 0.751288703973298 0.527341390842771 0.026091963 0.017753959 prediction 0.447894626261054 Functional Loss - LOC399715 ENSG00000215244 ncRNA_exonic Human lincRNA chr10:6373214 chr10:6373217 . . 0 24 hm5C_associated_SNPs_79106 0 0 1 2 6373207 6373227 lncRNA hsa-miR-3611 AL137145.2 miRanda starBase2
6366 chr10 6373217 6373217 1 + G A rs77984028 6373214 + 6373194 6373234 41 GGTTGAGAACTATTGTTCAACGCGAACTTCACATATGAAGC GGTTGAGAACTATTGTTCAACGCAAACTTCACATATGAAGC < 41bp 0.751288703973298 0.527341390842771 0.026091963 0.017753959 prediction 0.447894626261054 Functional Loss - LOC399715 ENSG00000215244 ncRNA_exonic Human lincRNA chr10:6373214 chr10:6373217 . . 0 24 hm5C_associated_SNPs_79106 0 0 1 2 6373216 6373240 lncRNA hsa-miR-3184-5p AL137145.2 miRanda starBase2
6367 chr1 202266662 202266662 1 + A C UCEC 202266658 + 202266638 202266678 41 ACCTGAATTATAACAAGCTGCAGGAGTTCCCTGTGGCCATC ACCTGAATTATAACAAGCTGCAGGCGTTCCCTGTGGCCATC < 41bp 0.723936765908622 0.320345588959537 0.6802858 0.38888258 prediction 0.447873531817244 Functional Loss - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202266658 chr1:202266662 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_79108 0 0 0 1 202266650 202266671 mRNA hsa-miR-873 LGR6 miRanda miRanda
6368 chr7 158738350 158738350 1 + T C rs182098988 158738349 + 158738329 158738369 41 CCTGGTGCTGGCCAGGGCGTCTGGCTCCATCGACATCCAGC CCTGGTGCTGGCCAGGGCGTCCGGCTCCATCGACATCCAGC < 41bp 0.73206480355875 0.50815390555692 0.15706953 0.44213682 prediction 0.44782179600366 Functional Loss - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158738349 chr7:158738350 synonymous SNV . 0 22 hm5C_associated_SNPs_79128 0 0 0 1 158738345 158738370 mRNA hsa-miR-138 WDR60 miRanda miRanda
6369 chr8 22477160 22477160 1 + T C UCEC 22477159 + 22477139 22477179 41 TGTTTCAAACAGGCTGACAGCTGGGTGGAGAAGGAGGAGCC TGTTTCAAACAGGCTGACAGCCGGGTGGAGAAGGAGGAGCC < 41bp 0.75321300358243 0.529530561449233 0.44129002 0.8984004 prediction 0.447364884266394 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22477159 chr8:22477160 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_79290 0 0 1 1 22477141 22477163 mRNA hsa-miR-199b-5p KIAA1967 miRanda miRanda
6370 chr11 134182780 134182780 1 + G T LUAD 134182778 + 134182758 134182798 41 GACCTGCACATTCCTGAACTCAGGGTATGTAATTTGAGAGT GACCTGCACATTCCTGAACTCATGGTATGTAATTTGAGAGT < 41bp 0.72350383173705 0.374658792174105 0.91080976 0.37042558 prediction 0.4470076634741 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134182778 chr11:134182780 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_79398 0 0 0 3 134182762 134182781 mRNA hsa-miR-125b GLB1L3 miRanda miRanda
6371 chr11 134182780 134182780 1 + G T LUAD 134182778 + 134182758 134182798 41 GACCTGCACATTCCTGAACTCAGGGTATGTAATTTGAGAGT GACCTGCACATTCCTGAACTCATGGTATGTAATTTGAGAGT < 41bp 0.72350383173705 0.374658792174105 0.91080976 0.37042558 prediction 0.4470076634741 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134182778 chr11:134182780 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_79398 0 0 0 3 134182770 134182781 mRNA hsa-miR-145 GLB1L3 miRanda miRanda
6372 chr11 134182780 134182780 1 + G T LUAD 134182778 + 134182758 134182798 41 GACCTGCACATTCCTGAACTCAGGGTATGTAATTTGAGAGT GACCTGCACATTCCTGAACTCATGGTATGTAATTTGAGAGT < 41bp 0.72350383173705 0.374658792174105 0.91080976 0.37042558 prediction 0.4470076634741 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134182778 chr11:134182780 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_79398 0 0 0 3 134182760 134182781 mRNA hsa-miR-125a-5p GLB1L3 miRanda miRanda
6373 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170759 151170783 mRNA hsa-miR-17 DCLK2 miRanda miRanda
6374 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170759 151170783 mRNA hsa-miR-20a DCLK2 miRanda miRanda
6375 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170761 151170783 mRNA hsa-miR-93 DCLK2 miRanda miRanda
6376 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170759 151170783 mRNA hsa-miR-106a DCLK2 miRanda miRanda
6377 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170763 151170783 mRNA hsa-miR-106b DCLK2 miRanda miRanda
6378 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170765 151170782 mRNA hsa-miR-302a DCLK2 miRanda miRanda
6379 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170765 151170782 mRNA hsa-miR-302b DCLK2 miRanda miRanda
6380 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170765 151170782 mRNA hsa-miR-302c DCLK2 miRanda miRanda
6381 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170765 151170782 mRNA hsa-miR-302d DCLK2 miRanda miRanda
6382 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170760 151170782 mRNA hsa-miR-372 DCLK2 miRanda miRanda
6383 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170763 151170782 mRNA hsa-miR-373 DCLK2 miRanda miRanda
6384 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170759 151170783 mRNA hsa-miR-20b DCLK2 miRanda miRanda
6385 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170764 151170782 mRNA hsa-miR-520e DCLK2 miRanda miRanda
6386 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170763 151170782 mRNA hsa-miR-520a-3p DCLK2 miRanda miRanda
6387 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170764 151170782 mRNA hsa-miR-520b DCLK2 miRanda miRanda
6388 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170763 151170782 mRNA hsa-miR-520c-3p DCLK2 miRanda miRanda
6389 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170764 151170783 mRNA hsa-miR-519d DCLK2 miRanda miRanda
6390 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170763 151170782 mRNA hsa-miR-520d-3p DCLK2 miRanda miRanda
6391 chr4 151170776 151170776 1 + G T UCEC 151170774 + 151170754 151170794 41 AGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTC AGGTGACAGGTAAACTAAAACATCACTTTAATAATGCGCTC < 41bp 0.723503732122878 0.391847449300423 0.31818897 0.16187137 prediction 0.447007464245756 Functional Loss - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151170774 chr4:151170776 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_79399 0 0 0 19 151170766 151170782 mRNA hsa-miR-302e DCLK2 miRanda miRanda
6392 chr9 15461794 15461794 1 + C T rs373666590 15461792 + 15461772 15461812 41 ATTGGCTTGGAGATGACAAGCACGAGTTTCTGGTATGTCTA ATTGGCTTGGAGATGACAAGCATGAGTTTCTGGTATGTCTA < 41bp 0.723490023059656 0.478437319234142 0.3256483 0.28643882 prediction 0.446980046119313 Functional Loss - SNAPC3 ENSG00000164975 UTR3 Human protein_coding chr9:15461792 chr9:15461794 . . 0 23 hm5C_associated_SNPs_79412 0 0 1 2 15461790 15461803 mRNA hsa-miR-28-5p SNAPC3 miRanda miRanda
6393 chr9 15461794 15461794 1 + C T rs373666590 15461792 + 15461772 15461812 41 ATTGGCTTGGAGATGACAAGCACGAGTTTCTGGTATGTCTA ATTGGCTTGGAGATGACAAGCATGAGTTTCTGGTATGTCTA < 41bp 0.723490023059656 0.478437319234142 0.3256483 0.28643882 prediction 0.446980046119313 Functional Loss - SNAPC3 ENSG00000164975 UTR3 Human protein_coding chr9:15461792 chr9:15461794 . . 0 23 hm5C_associated_SNPs_79412 0 0 1 2 15461790 15461803 mRNA hsa-miR-708 SNAPC3 miRanda miRanda
6394 chr15 41020937 41020937 1 + G A CESC 41020934 + 41020914 41020954 41 GTCTCTCTGGCAGTGATGTCCTGGATAATGTAGCATATGCT GTCTCTCTGGCAGTGATGTCCTGAATAATGTAGCATATGCT < 41bp 0.776553322384348 0.553163503289397 0.49777707 0.28755283 prediction 0.446779638189901 Functional Loss - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41020934 chr15:41020937 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_79477 0 0 0 2 41020926 41020948 mRNA hsa-miR-221 RAD51 miRanda miRanda
6395 chr15 41020937 41020937 1 + G A CESC 41020934 + 41020914 41020954 41 GTCTCTCTGGCAGTGATGTCCTGGATAATGTAGCATATGCT GTCTCTCTGGCAGTGATGTCCTGAATAATGTAGCATATGCT < 41bp 0.776553322384348 0.553163503289397 0.49777707 0.28755283 prediction 0.446779638189901 Functional Loss - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41020934 chr15:41020937 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_79477 0 0 0 2 41020929 41020948 mRNA hsa-miR-222 RAD51 miRanda miRanda
6396 chr6 96986556 96986556 1 + A C COAD 96986555 + 96986535 96986575 41 AAGATGCTGCCATATTGCTTCAGCAGGTGATGAGGGCATTC AAGATGCTGCCATATTGCTTCCGCAGGTGATGAGGGCATTC < 41bp 0.791328855805945 0.56794643075592 0.21343762 0.16370338 prediction 0.446764850100049 Functional Loss - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96986555 chr6:96986556 nonsynonymous SNV 0.984 1 22 hm5C_associated_SNPs_79482 0 0 1 2 96986556 96986575 mRNA hsa-miR-365 KIAA0776 miRanda miRanda
6397 chr6 96986556 96986556 1 + A C COAD 96986555 + 96986535 96986575 41 AAGATGCTGCCATATTGCTTCAGCAGGTGATGAGGGCATTC AAGATGCTGCCATATTGCTTCCGCAGGTGATGAGGGCATTC < 41bp 0.791328855805945 0.56794643075592 0.21343762 0.16370338 prediction 0.446764850100049 Functional Loss - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96986555 chr6:96986556 nonsynonymous SNV 0.984 1 22 hm5C_associated_SNPs_79482 0 0 1 2 96986541 96986562 mRNA hsa-miR-370 KIAA0776 miRanda miRanda
6398 chr5 147821817 147821817 1 + C T rs148537296 147821815 + 147821795 147821835 41 ATGCAGTTGGGAGGTCCTGGCTCGGTTTGCTATATAGGGAA ATGCAGTTGGGAGGTCCTGGCTTGGTTTGCTATATAGGGAA < 41bp 0.816132581648521 0.592762524858665 0.17664275 0.1030792 prediction 0.446740113579711 Functional Loss - FBXO38 ENSG00000145868 UTR3 Human protein_coding chr5:147821815 chr5:147821817 . . 0 23 hm5C_associated_SNPs_79495 0 0 1 1 147821799 147821820 mRNA hsa-miR-615-3p FBXO38 miRanda miRanda
6399 chr6 32609254 32609254 1 + G T rs1142331 32609251 + 32609231 32609271 41 AATTTGGAGGTTTTGACCCGCAGGGTGCACTGAGAAACATG AATTTGGAGGTTTTGACCCGCAGTGTGCACTGAGAAACATG < 41bp 0.723362674237042 0.320895819864436 0.83783555 0.4135527 prediction 0.446725348474083 Functional Loss - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32609251 chr6:32609254 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_79509 0 0 0 3 32609242 32609263 mRNA hsa-miR-148a HLA-DQA1 miRanda miRanda
6400 chr6 32609254 32609254 1 + G T rs1142331 32609251 + 32609231 32609271 41 AATTTGGAGGTTTTGACCCGCAGGGTGCACTGAGAAACATG AATTTGGAGGTTTTGACCCGCAGTGTGCACTGAGAAACATG < 41bp 0.723362674237042 0.320895819864436 0.83783555 0.4135527 prediction 0.446725348474083 Functional Loss - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32609251 chr6:32609254 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_79509 0 0 0 3 32609236 32609263 mRNA hsa-miR-152 HLA-DQA1 miRanda miRanda
6401 chr6 32609254 32609254 1 + G T rs1142331 32609251 + 32609231 32609271 41 AATTTGGAGGTTTTGACCCGCAGGGTGCACTGAGAAACATG AATTTGGAGGTTTTGACCCGCAGTGTGCACTGAGAAACATG < 41bp 0.723362674237042 0.320895819864436 0.83783555 0.4135527 prediction 0.446725348474083 Functional Loss - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32609251 chr6:32609254 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_79509 0 0 0 3 32609242 32609263 mRNA hsa-miR-148b HLA-DQA1 miRanda miRanda
6402 chr17 2282773 2282773 1 + G A CESC 2282770 + 2282750 2282790 41 AGGAGATCCTGCGGATTGCCCGGGACCTCGTCCACAAGGTG AGGAGATCCTGCGGATTGCCCGGAACCTCGTCCACAAGGTG < 41bp 0.790652103979036 0.567309759106809 0.88622403 0.7127491 prediction 0.446684689744455 Functional Loss - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2282770 chr17:2282773 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_79522 0 0 0 1 2282765 2282787 mRNA hsa-miR-758 SGSM2 miRanda miRanda
6403 chrX 71380958 71380958 1 + G C rs6624602 71380957 + 71380937 71380977 41 CTCAGAGATTCTTTCCCTCCCGCAAATACTTCTGCATCTGG CTCAGAGATTCTTTCCCTCCCCCAAATACTTCTGCATCTGG < 41bp 0.857207505799317 0.633887102932611 0.1625199 0.09945184 prediction 0.446640805733412 Functional Loss - FLJ44635 ENSG00000225471 ncRNA_exonic Human transcribed_processed_pseudogene chrX:71380957 chrX:71380958 . . 0 22 hm5C_associated_SNPs_79540 0 0 0 1 71380954 71380975 mRNA hsa-miR-383 FLJ44635 miRanda miRanda
6404 chr20 33514954 33514954 1 + T C GBM 33514953 + 33514933 33514973 41 CCATGACCTCGGGGACATGTCTACTGTGGCTGACCCATCTG CCATGACCTCGGGGACATGTCCACTGTGGCTGACCCATCTG < 41bp 0.723317910597423 0.474528163141227 0.16791552 0.120669305 prediction 0.446635821194846 Functional Loss - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33514953 chr20:33514954 synonymous SNV . 0 22 hm5C_associated_SNPs_79543 0 0 1 1 33514938 33514958 mRNA hsa-miR-411 ACSS2 miRanda miRanda
6405 chr1 54360058 54360058 1 + G A SKCM 54360055 + 54360035 54360075 41 CCAGGAACCCCCATTTCAGCCACGACAACTGGATACCAACC CCAGGAACCCCCATTTCAGCCACAACAACTGGATACCAACC < 41bp 0.759558686939739 0.536274970969486 0.018562287 0.0110313 prediction 0.446567431940505 Functional Loss - DIO1 ENSG00000211452 CDS Human protein_coding chr1:54360055 chr1:54360058 nonsynonymous SNV 0.672 3 24 hm5C_associated_SNPs_79565 0 0 0 1 54360043 54360068 mRNA hsa-miR-145 DIO1 miRanda miRanda
6406 chr17 76203000 76203000 1 + G A BLCA 76202997 + 76202977 76203017 41 CTCTTCCTGTTCCAGATTATCTTGAAAACAATCTTCCAGTA CTCTTCCTGTTCCAGATTATCTTAAAAACAATCTTCCAGTA < 41bp 0.723235623118537 0.490401975181796 0.16662201 0.22628045 prediction 0.446471246237074 Functional Loss - AFMID ENSG00000183077 CDS Human protein_coding chr17:76202997 chr17:76203000 nonsynonymous SNV 0.948 0 24 hm5C_associated_SNPs_79601 0 0 1 2 76202992 76203002 mRNA hsa-miR-26a AFMID miRanda miRanda
6407 chr17 76203000 76203000 1 + G A BLCA 76202997 + 76202977 76203017 41 CTCTTCCTGTTCCAGATTATCTTGAAAACAATCTTCCAGTA CTCTTCCTGTTCCAGATTATCTTAAAAACAATCTTCCAGTA < 41bp 0.723235623118537 0.490401975181796 0.16662201 0.22628045 prediction 0.446471246237074 Functional Loss - AFMID ENSG00000183077 CDS Human protein_coding chr17:76202997 chr17:76203000 nonsynonymous SNV 0.948 0 24 hm5C_associated_SNPs_79601 0 0 1 2 76202992 76203002 mRNA hsa-miR-26b AFMID miRanda miRanda
6408 chr10 72637005 72637005 1 + A C LUSC 72637001 + 72636981 72637021 41 TGTTGACAGGAATATGGTTGCAGAATTGTCCTCAGTCTTCT TGTTGACAGGAATATGGTTGCAGACTTGTCCTCAGTCTTCT < 41bp 0.723105251641865 0.332101688426179 0.30109727 0.2999307 prediction 0.446210503283729 Functional Loss - SGPL1 ENSG00000166224 CDS Human protein_coding chr10:72637001 chr10:72637005 nonsynonymous SNV 0.584 0 25 hm5C_associated_SNPs_79686 0 0 1 1 72636985 72637006 mRNA hsa-miR-544 SGPL1 miRanda miRanda
6409 chr19 41622101 41622101 1 + G T UCEC 41622099 + 41622079 41622119 41 GCAGCTGCCTTCACCATGGACAGCATAAGCACAGCCATCTT GCAGCTGCCTTCACCATGGACATCATAAGCACAGCCATCTT < 41bp 0.723084965581632 0.37649407900392 0.012749046 0.012945175 prediction 0.446169931163264 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622099 chr19:41622101 nonsynonymous SNV 0.036 0 23 hm5C_associated_SNPs_79701 0 0 0 1 41622092 41622112 mRNA hsa-miR-218 CYP2F1 miRanda miRanda
6410 chr8 94713595 94713595 1 + C T STAD 94713593 + 94713573 94713613 41 CTCCTGGTGAATGAAATTAACGCGTATGCTGCTACAGAGAC CTCCTGGTGAATGAAATTAACGTGTATGCTGCTACAGAGAC < 41bp 0.825536116324811 0.602462927513399 0.0481337 0.075690866 prediction 0.446146377622824 Functional Loss - FAM92A ENSG00000188343 CDS Human protein_coding chr8:94713593 chr8:94713595 nonsynonymous SNV 0.229 0 23 hm5C_associated_SNPs_79714 0 0 1 8 94713583 94713606 mRNA hsa-miR-15a FAM92A1 miRanda miRanda
6411 chr8 94713595 94713595 1 + C T STAD 94713593 + 94713573 94713613 41 CTCCTGGTGAATGAAATTAACGCGTATGCTGCTACAGAGAC CTCCTGGTGAATGAAATTAACGTGTATGCTGCTACAGAGAC < 41bp 0.825536116324811 0.602462927513399 0.0481337 0.075690866 prediction 0.446146377622824 Functional Loss - FAM92A ENSG00000188343 CDS Human protein_coding chr8:94713593 chr8:94713595 nonsynonymous SNV 0.229 0 23 hm5C_associated_SNPs_79714 0 0 1 8 94713581 94713606 mRNA hsa-miR-16 FAM92A1 miRanda miRanda
6412 chr8 94713595 94713595 1 + C T STAD 94713593 + 94713573 94713613 41 CTCCTGGTGAATGAAATTAACGCGTATGCTGCTACAGAGAC CTCCTGGTGAATGAAATTAACGTGTATGCTGCTACAGAGAC < 41bp 0.825536116324811 0.602462927513399 0.0481337 0.075690866 prediction 0.446146377622824 Functional Loss - FAM92A ENSG00000188343 CDS Human protein_coding chr8:94713593 chr8:94713595 nonsynonymous SNV 0.229 0 23 hm5C_associated_SNPs_79714 0 0 1 8 94713583 94713605 mRNA hsa-miR-103 FAM92A1 miRanda miRanda
6413 chr8 94713595 94713595 1 + C T STAD 94713593 + 94713573 94713613 41 CTCCTGGTGAATGAAATTAACGCGTATGCTGCTACAGAGAC CTCCTGGTGAATGAAATTAACGTGTATGCTGCTACAGAGAC < 41bp 0.825536116324811 0.602462927513399 0.0481337 0.075690866 prediction 0.446146377622824 Functional Loss - FAM92A ENSG00000188343 CDS Human protein_coding chr8:94713593 chr8:94713595 nonsynonymous SNV 0.229 0 23 hm5C_associated_SNPs_79714 0 0 1 8 94713583 94713605 mRNA hsa-miR-107 FAM92A1 miRanda miRanda
6414 chr8 94713595 94713595 1 + C T STAD 94713593 + 94713573 94713613 41 CTCCTGGTGAATGAAATTAACGCGTATGCTGCTACAGAGAC CTCCTGGTGAATGAAATTAACGTGTATGCTGCTACAGAGAC < 41bp 0.825536116324811 0.602462927513399 0.0481337 0.075690866 prediction 0.446146377622824 Functional Loss - FAM92A ENSG00000188343 CDS Human protein_coding chr8:94713593 chr8:94713595 nonsynonymous SNV 0.229 0 23 hm5C_associated_SNPs_79714 0 0 1 8 94713583 94713606 mRNA hsa-miR-15b FAM92A1 miRanda miRanda
6415 chr8 94713595 94713595 1 + C T STAD 94713593 + 94713573 94713613 41 CTCCTGGTGAATGAAATTAACGCGTATGCTGCTACAGAGAC CTCCTGGTGAATGAAATTAACGTGTATGCTGCTACAGAGAC < 41bp 0.825536116324811 0.602462927513399 0.0481337 0.075690866 prediction 0.446146377622824 Functional Loss - FAM92A ENSG00000188343 CDS Human protein_coding chr8:94713593 chr8:94713595 nonsynonymous SNV 0.229 0 23 hm5C_associated_SNPs_79714 0 0 1 8 94713586 94713606 mRNA hsa-miR-195 FAM92A1 miRanda miRanda
6416 chr8 94713595 94713595 1 + C T STAD 94713593 + 94713573 94713613 41 CTCCTGGTGAATGAAATTAACGCGTATGCTGCTACAGAGAC CTCCTGGTGAATGAAATTAACGTGTATGCTGCTACAGAGAC < 41bp 0.825536116324811 0.602462927513399 0.0481337 0.075690866 prediction 0.446146377622824 Functional Loss - FAM92A ENSG00000188343 CDS Human protein_coding chr8:94713593 chr8:94713595 nonsynonymous SNV 0.229 0 23 hm5C_associated_SNPs_79714 0 0 1 8 94713586 94713606 mRNA hsa-miR-424 FAM92A1 miRanda miRanda
6417 chr8 94713595 94713595 1 + C T STAD 94713593 + 94713573 94713613 41 CTCCTGGTGAATGAAATTAACGCGTATGCTGCTACAGAGAC CTCCTGGTGAATGAAATTAACGTGTATGCTGCTACAGAGAC < 41bp 0.825536116324811 0.602462927513399 0.0481337 0.075690866 prediction 0.446146377622824 Functional Loss - FAM92A ENSG00000188343 CDS Human protein_coding chr8:94713593 chr8:94713595 nonsynonymous SNV 0.229 0 23 hm5C_associated_SNPs_79714 0 0 1 8 94713584 94713606 mRNA hsa-miR-497 FAM92A1 miRanda miRanda
6418 chr19 55045004 55045004 1 + G A SKCM 55045001 + 55044981 55045021 41 GGCCGAGCCCTGTGGTTCCCCTAGGAGGACGTGTGACTCTC GGCCGAGCCCTGTGGTTCCCCTAAGAGGACGTGTGACTCTC < 41bp 0.791966260741457 0.568894319978515 0.2638427 0.113755435 prediction 0.446143881525885 Functional Loss - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55045001 chr19:55045004 nonsynonymous SNV 0.119 0 24 hm5C_associated_SNPs_79716 0 0 0 1 55045004 55045025 mRNA hsa-miR-185 KIR3DX1 miRanda miRanda
6419 chr11 68682320 68682320 1 + C T rs76707931 68682317 + 68682297 68682337 41 TGCTGCGCCCCCTCCAACATCGCCGTGGACAATCTGGTGGA TGCTGCGCCCCCTCCAACATCGCTGTGGACAATCTGGTGGA < 41bp 0.723787094649552 0.50072302081321 0.48205033 0.28259033 prediction 0.446128147672686 Functional Loss - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68682317 chr11:68682320 synonymous SNV . 0 24 hm5C_associated_SNPs_79724 2 0 1 1 68682312 68682331 mRNA hsa-miR-219-5p IGHMBP2 miRanda miRanda
6420 chr4 76472354 76472354 1 + G C rs17214073 76472350 + 76472330 76472370 41 GGTGCGTCAACATGCAGGTACAGGGGCAGACCCTTCTCCCT GGTGCGTCAACATGCAGGTACAGGCGCAGACCCTTCTCCCT < 41bp 0.72298846135943 0.459471369823801 0.916746 0.42112032 prediction 0.44597692271886 Functional Loss - THAP6;C4orf26 ENSG00000174796 intronic Human protein_coding chr4:76472350 chr4:76472354 . . 0 25 hm5C_associated_SNPs_79780 0 0 1 1 76472332 76472355 mRNA hsa-miR-339-5p THAP6 miRanda miRanda
6421 chr1 20940386 20940386 1 + G A BLCA 20940383 + 20940363 20940403 41 TGTGGGGCCTGCAGGCAAGTCATGAGAGAGGTAAGCAGCTT TGTGGGGCCTGCAGGCAAGTCATAAGAGAGGTAAGCAGCTT < 41bp 0.722928719032314 0.490859984827941 0.45468104 0.41908526 prediction 0.445857438064629 Functional Loss - CDA ENSG00000158825 CDS Human protein_coding chr1:20940383 chr1:20940386 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_79823 0 0 0 1 20940378 20940392 mRNA hsa-miR-19b CDA miRanda miRanda
6422 chr1 153004903 153004903 1 + C T SKCM 153004901 + 153004881 153004921 41 GGTGAAACAGCCTTGCCAGCCTCCACCTCAGGAACCATGCA GGTGAAACAGCCTTGCCAGCCTTCACCTCAGGAACCATGCA < 41bp 0.841896617348222 0.618973791465795 0.9084476 0.33640826 prediction 0.445845651764854 Functional Loss - SPRR1B ENSG00000169469 CDS Human protein_coding chr1:153004901 chr1:153004903 nonsynonymous SNV 0.894 1 23 hm5C_associated_SNPs_79828 0 0 0 1 153004883 153004904 mRNA hsa-miR-485-5p SPRR1B miRanda miRanda
6423 chr3 195452815 195452815 1 + G A BLCA 195452812 + 195452792 195452832 41 TCAGACACAGATCTCATCCCCACGGAAGGGGTGAAGGCCTC TCAGACACAGATCTCATCCCCACAGAAGGGGTGAAGGCCTC < 41bp 0.775846567627251 0.552936240272716 0.11350861 0.05992639 prediction 0.445820654709069 Functional Loss - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195452812 chr3:195452815 synonymous SNV . 0 24 hm5C_associated_SNPs_79843 0 0 0 1 195452794 195452815 mRNA hsa-miR-491-5p MUC20 miRanda miRanda
6424 chr2 106509597 106509597 1 + G A STAD 106509594 + 106509574 106509614 41 CGCCCATCTTCACCAGCGAGCACGGGGAGAAGCTCTACCTC CGCCCATCTTCACCAGCGAGCACAGGGAGAAGCTCTACCTC < 41bp 0.789313732301318 0.566435119050057 0.8556049 0.74619603 prediction 0.445757226502522 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509594 chr2:106509597 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_79863 0 0 0 9 106509595 106509615 mRNA hsa-let-7a NCK2 miRanda miRanda
6425 chr2 106509597 106509597 1 + G A STAD 106509594 + 106509574 106509614 41 CGCCCATCTTCACCAGCGAGCACGGGGAGAAGCTCTACCTC CGCCCATCTTCACCAGCGAGCACAGGGAGAAGCTCTACCTC < 41bp 0.789313732301318 0.566435119050057 0.8556049 0.74619603 prediction 0.445757226502522 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509594 chr2:106509597 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_79863 0 0 0 9 106509595 106509615 mRNA hsa-let-7b NCK2 miRanda miRanda
6426 chr2 106509597 106509597 1 + G A STAD 106509594 + 106509574 106509614 41 CGCCCATCTTCACCAGCGAGCACGGGGAGAAGCTCTACCTC CGCCCATCTTCACCAGCGAGCACAGGGAGAAGCTCTACCTC < 41bp 0.789313732301318 0.566435119050057 0.8556049 0.74619603 prediction 0.445757226502522 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509594 chr2:106509597 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_79863 0 0 0 9 106509595 106509615 mRNA hsa-let-7c NCK2 miRanda miRanda
6427 chr2 106509597 106509597 1 + G A STAD 106509594 + 106509574 106509614 41 CGCCCATCTTCACCAGCGAGCACGGGGAGAAGCTCTACCTC CGCCCATCTTCACCAGCGAGCACAGGGAGAAGCTCTACCTC < 41bp 0.789313732301318 0.566435119050057 0.8556049 0.74619603 prediction 0.445757226502522 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509594 chr2:106509597 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_79863 0 0 0 9 106509595 106509615 mRNA hsa-let-7d NCK2 miRanda miRanda
6428 chr2 106509597 106509597 1 + G A STAD 106509594 + 106509574 106509614 41 CGCCCATCTTCACCAGCGAGCACGGGGAGAAGCTCTACCTC CGCCCATCTTCACCAGCGAGCACAGGGAGAAGCTCTACCTC < 41bp 0.789313732301318 0.566435119050057 0.8556049 0.74619603 prediction 0.445757226502522 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509594 chr2:106509597 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_79863 0 0 0 9 106509595 106509615 mRNA hsa-let-7e NCK2 miRanda miRanda
6429 chr2 106509597 106509597 1 + G A STAD 106509594 + 106509574 106509614 41 CGCCCATCTTCACCAGCGAGCACGGGGAGAAGCTCTACCTC CGCCCATCTTCACCAGCGAGCACAGGGAGAAGCTCTACCTC < 41bp 0.789313732301318 0.566435119050057 0.8556049 0.74619603 prediction 0.445757226502522 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509594 chr2:106509597 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_79863 0 0 0 9 106509595 106509615 mRNA hsa-let-7f NCK2 miRanda miRanda
6430 chr2 106509597 106509597 1 + G A STAD 106509594 + 106509574 106509614 41 CGCCCATCTTCACCAGCGAGCACGGGGAGAAGCTCTACCTC CGCCCATCTTCACCAGCGAGCACAGGGAGAAGCTCTACCTC < 41bp 0.789313732301318 0.566435119050057 0.8556049 0.74619603 prediction 0.445757226502522 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509594 chr2:106509597 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_79863 0 0 0 9 106509596 106509615 mRNA hsa-miR-98 NCK2 miRanda miRanda
6431 chr2 106509597 106509597 1 + G A STAD 106509594 + 106509574 106509614 41 CGCCCATCTTCACCAGCGAGCACGGGGAGAAGCTCTACCTC CGCCCATCTTCACCAGCGAGCACAGGGAGAAGCTCTACCTC < 41bp 0.789313732301318 0.566435119050057 0.8556049 0.74619603 prediction 0.445757226502522 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509594 chr2:106509597 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_79863 0 0 0 9 106509595 106509615 mRNA hsa-let-7g NCK2 miRanda miRanda
6432 chr2 106509597 106509597 1 + G A STAD 106509594 + 106509574 106509614 41 CGCCCATCTTCACCAGCGAGCACGGGGAGAAGCTCTACCTC CGCCCATCTTCACCAGCGAGCACAGGGAGAAGCTCTACCTC < 41bp 0.789313732301318 0.566435119050057 0.8556049 0.74619603 prediction 0.445757226502522 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509594 chr2:106509597 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_79863 0 0 0 9 106509595 106509615 mRNA hsa-let-7i NCK2 miRanda miRanda
6433 chr3 9986618 9986618 1 + A C rs114661849 9986614 + 9986594 9986634 41 TCACAGCTCCCTCCTGCCAGCTGCATGCTGCCAGTTCCTGT TCACAGCTCCCTCCTGCCAGCTGCCTGCTGCCAGTTCCTGT < 41bp 0.722874818452138 0.331138727205491 0.14723009 0.11806345 prediction 0.445749636904275 Functional Loss - CRELD1 ENSG00000163703 UTR3 Human protein_coding chr3:9986614 chr3:9986618 . . 0 25 hm5C_associated_SNPs_79866 0 0 1 3 9986604 9986625 mRNA hsa-miR-103 CRELD1 miRanda miRanda
6434 chr3 9986618 9986618 1 + A C rs114661849 9986614 + 9986594 9986634 41 TCACAGCTCCCTCCTGCCAGCTGCATGCTGCCAGTTCCTGT TCACAGCTCCCTCCTGCCAGCTGCCTGCTGCCAGTTCCTGT < 41bp 0.722874818452138 0.331138727205491 0.14723009 0.11806345 prediction 0.445749636904275 Functional Loss - CRELD1 ENSG00000163703 UTR3 Human protein_coding chr3:9986614 chr3:9986618 . . 0 25 hm5C_associated_SNPs_79866 0 0 1 3 9986604 9986625 mRNA hsa-miR-107 CRELD1 miRanda miRanda
6435 chr3 9986618 9986618 1 + A C rs114661849 9986614 + 9986594 9986634 41 TCACAGCTCCCTCCTGCCAGCTGCATGCTGCCAGTTCCTGT TCACAGCTCCCTCCTGCCAGCTGCCTGCTGCCAGTTCCTGT < 41bp 0.722874818452138 0.331138727205491 0.14723009 0.11806345 prediction 0.445749636904275 Functional Loss - CRELD1 ENSG00000163703 UTR3 Human protein_coding chr3:9986614 chr3:9986618 . . 0 25 hm5C_associated_SNPs_79866 0 0 1 3 9986615 9986634 mRNA hsa-miR-873 CRELD1 miRanda miRanda
6436 chr1 166973433 166973433 1 + G A SKCM 166973430 + 166973410 166973450 41 CCCTCAGGTGATTCTAGTCACAAGATTCCTATTTCAAATTT CCCTCAGGTGATTCTAGTCACAAAATTCCTATTTCAAATTT < 41bp 0.734401331608217 0.511533395479098 0.3788746 0.17960128 prediction 0.445735872258237 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166973430 chr1:166973433 synonymous SNV . 0 24 hm5C_associated_SNPs_79873 0 0 0 1 166973417 166973433 mRNA hsa-miR-758 MAEL miRanda miRanda
6437 chr12 31254037 31254037 1 + G A UCEC 31254034 + 31254014 31254054 41 TCCAACCAGCCGCTGGAATTCACGTTCCAGAAAAGAGAGCT TCCAACCAGCCGCTGGAATTCACATTCCAGAAAAGAGAGCT < 41bp 0.735069897937147 0.512269581850827 0.29444593 0.27412617 prediction 0.445600632172639 Functional Loss - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31254034 chr12:31254037 synonymous SNV . 0 24 hm5C_associated_SNPs_79909 0 0 1 1 31254017 31254040 mRNA hsa-miR-191 DDX11 miRanda miRanda
6438 chr1 32092610 32092610 1 + G A rs41263963 32092607 + 32092587 32092627 41 GGCTGCCCTGGAGGCTCCGGCTCGGGGGATCTGCCCCTACC GGCTGCCCTGGAGGCTCCGGCTCAGGGGATCTGCCCCTACC < 41bp 0.768470863440218 0.545685991629206 0.92459464 0.23406851 prediction 0.445569743622025 Functional Loss - HCRTR1 ENSG00000121764 UTR3 Human protein_coding chr1:32092607 chr1:32092610 . . 0 24 hm5C_associated_SNPs_79919 0 0 0 1 32092591 32092612 mRNA hsa-miR-615-3p HCRTR1 miRanda miRanda
6439 chr19 7986621 7986621 1 + G A SKCM 7986618 + 7986598 7986638 41 GGATCTGGCTGAGAAGATAACAGGGCCACTGGAAGAAGCCC GGATCTGGCTGAGAAGATAACAGAGCCACTGGAAGAAGCCC < 41bp 0.803329582696653 0.580602361283289 0.91619205 0.90601325 prediction 0.445454442826728 Functional Loss - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986618 chr19:7986621 nonsynonymous SNV 0.952 2 24 hm5C_associated_SNPs_79956 0 0 1 1 7986607 7986626 mRNA hsa-miR-328 SNAPC2 miRanda miRanda
6440 chr7 100552913 100552913 1 + G A BLCA 100552910 + 100552890 100552930 41 ACAATGGTGGCACCTGGGAACAGGGACAGTGTGCTTGCCTT ACAATGGTGGCACCTGGGAACAGAGACAGTGTGCTTGCCTT < 41bp 0.776393189134444 0.553676401871201 0.8829494 0.5751913 prediction 0.445433574526485 Functional Loss - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100552910 chr7:100552913 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_79969 0 0 0 1 100552908 100552929 mRNA hsa-miR-31 MUC3A miRanda miRanda
6441 chr10 4884032 4884032 1 + G A rs138083633 4884029 + 4884009 4884049 41 TCAAGAGGATTGCAAAGGAGCACGGCAAGTCTCCTGCTCAG TCAAGAGGATTGCAAAGGAGCACAGCAAGTCTCCTGCTCAG < 41bp 0.789053095424074 0.566357575807603 0.26185265 0.102879524 prediction 0.445391039232941 Functional Loss - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4884029 chr10:4884032 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_79989 0 0 0 1 4884024 4884045 mRNA hsa-miR-873 AKR1E2 miRanda miRanda
6442 chr13 50594403 50594403 1 + T C UCEC 50594402 + 50594382 50594422 41 TGGCCAACGGAACAAATGTCCTCGGCTTACTGATTGACACT TGGCCAACGGAACAAATGTCCCCGGCTTACTGATTGACACT < 41bp 0.733041010694911 0.510362743609253 0.27553385 0.2504372 prediction 0.445356534171316 Functional Loss - KCNRG ENSG00000198553 CDS Human protein_coding chr13:50594402 chr13:50594403 nonsynonymous SNV 0.982 3 22 hm5C_associated_SNPs_80001 0 0 0 5 50594403 50594425 mRNA hsa-miR-17 KCNRG miRanda miRanda
6443 chr13 50594403 50594403 1 + T C UCEC 50594402 + 50594382 50594422 41 TGGCCAACGGAACAAATGTCCTCGGCTTACTGATTGACACT TGGCCAACGGAACAAATGTCCCCGGCTTACTGATTGACACT < 41bp 0.733041010694911 0.510362743609253 0.27553385 0.2504372 prediction 0.445356534171316 Functional Loss - KCNRG ENSG00000198553 CDS Human protein_coding chr13:50594402 chr13:50594403 nonsynonymous SNV 0.982 3 22 hm5C_associated_SNPs_80001 0 0 0 5 50594403 50594425 mRNA hsa-miR-20a KCNRG miRanda miRanda
6444 chr13 50594403 50594403 1 + T C UCEC 50594402 + 50594382 50594422 41 TGGCCAACGGAACAAATGTCCTCGGCTTACTGATTGACACT TGGCCAACGGAACAAATGTCCCCGGCTTACTGATTGACACT < 41bp 0.733041010694911 0.510362743609253 0.27553385 0.2504372 prediction 0.445356534171316 Functional Loss - KCNRG ENSG00000198553 CDS Human protein_coding chr13:50594402 chr13:50594403 nonsynonymous SNV 0.982 3 22 hm5C_associated_SNPs_80001 0 0 0 5 50594403 50594425 mRNA hsa-miR-106a KCNRG miRanda miRanda
6445 chr13 50594403 50594403 1 + T C UCEC 50594402 + 50594382 50594422 41 TGGCCAACGGAACAAATGTCCTCGGCTTACTGATTGACACT TGGCCAACGGAACAAATGTCCCCGGCTTACTGATTGACACT < 41bp 0.733041010694911 0.510362743609253 0.27553385 0.2504372 prediction 0.445356534171316 Functional Loss - KCNRG ENSG00000198553 CDS Human protein_coding chr13:50594402 chr13:50594403 nonsynonymous SNV 0.982 3 22 hm5C_associated_SNPs_80001 0 0 0 5 50594400 50594423 mRNA hsa-miR-301a KCNRG miRanda miRanda
6446 chr13 50594403 50594403 1 + T C UCEC 50594402 + 50594382 50594422 41 TGGCCAACGGAACAAATGTCCTCGGCTTACTGATTGACACT TGGCCAACGGAACAAATGTCCCCGGCTTACTGATTGACACT < 41bp 0.733041010694911 0.510362743609253 0.27553385 0.2504372 prediction 0.445356534171316 Functional Loss - KCNRG ENSG00000198553 CDS Human protein_coding chr13:50594402 chr13:50594403 nonsynonymous SNV 0.982 3 22 hm5C_associated_SNPs_80001 0 0 0 5 50594403 50594425 mRNA hsa-miR-20b KCNRG miRanda miRanda
6447 chr14 76620804 76620804 1 + G A UCEC 76620801 + 76620781 76620821 41 GGAGGAGATGGCGCTGAGCCCCCGACAGCAGAGGCGGCAGC GGAGGAGATGGCGCTGAGCCCCCAACAGCAGAGGCGGCAGC < 41bp 0.774930635169647 0.552263783767779 0.1610974 0.0881235 prediction 0.445333702803735 Functional Loss - GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76620801 chr14:76620804 nonsynonymous SNV 0.989 3 24 hm5C_associated_SNPs_80006 0 0 1 1 76620802 76620823 mRNA hsa-miR-22 C14orf118 miRanda miRanda
6448 chr17 58677622 58677622 1 + A C rs577443569 58677621 + 58677601 58677641 41 CCAGCTCTCGCGGACAAGTCCAGACATCGCGCGCCCCCCCT CCAGCTCTCGCGGACAAGTCCCGACATCGCGCGCCCCCCCT < 41bp 0.722649729481871 0.482695615021961 0.5648887 0.4199279 prediction 0.445299458963742 Functional Loss - PPM1D ENSG00000170836 UTR5 Human protein_coding chr17:58677621 chr17:58677622 . . 0 22 hm5C_associated_SNPs_80016 0 0 0 2 58677603 58677624 mRNA hsa-miR-378 PPM1D miRanda miRanda
6449 chr17 58677622 58677622 1 + A C rs577443569 58677621 + 58677601 58677641 41 CCAGCTCTCGCGGACAAGTCCAGACATCGCGCGCCCCCCCT CCAGCTCTCGCGGACAAGTCCCGACATCGCGCGCCCCCCCT < 41bp 0.722649729481871 0.482695615021961 0.5648887 0.4199279 prediction 0.445299458963742 Functional Loss - PPM1D ENSG00000170836 UTR5 Human protein_coding chr17:58677621 chr17:58677622 . . 0 22 hm5C_associated_SNPs_80016 0 0 0 2 58677603 58677624 mRNA hsa-miR-422a PPM1D miRanda miRanda
6450 chr17 73517534 73517534 1 + G T SARC 73517532 + 73517512 73517552 41 AGGCAGCTTAACCTGGATGCCAGCGTGCAGCACTTGGAGGA AGGCAGCTTAACCTGGATGCCATCGTGCAGCACTTGGAGGA < 41bp 0.722633903327033 0.364633033916514 0.47969994 0.28987008 prediction 0.445267806654065 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517532 chr17:73517534 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_80023 0 0 1 12 73517526 73517547 mRNA hsa-miR-302a TSEN54 miRanda miRanda
6451 chr17 73517534 73517534 1 + G T SARC 73517532 + 73517512 73517552 41 AGGCAGCTTAACCTGGATGCCAGCGTGCAGCACTTGGAGGA AGGCAGCTTAACCTGGATGCCATCGTGCAGCACTTGGAGGA < 41bp 0.722633903327033 0.364633033916514 0.47969994 0.28987008 prediction 0.445267806654065 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517532 chr17:73517534 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_80023 0 0 1 12 73517526 73517547 mRNA hsa-miR-302b TSEN54 miRanda miRanda
6452 chr17 73517534 73517534 1 + G T SARC 73517532 + 73517512 73517552 41 AGGCAGCTTAACCTGGATGCCAGCGTGCAGCACTTGGAGGA AGGCAGCTTAACCTGGATGCCATCGTGCAGCACTTGGAGGA < 41bp 0.722633903327033 0.364633033916514 0.47969994 0.28987008 prediction 0.445267806654065 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517532 chr17:73517534 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_80023 0 0 1 12 73517526 73517547 mRNA hsa-miR-302c TSEN54 miRanda miRanda
6453 chr17 73517534 73517534 1 + G T SARC 73517532 + 73517512 73517552 41 AGGCAGCTTAACCTGGATGCCAGCGTGCAGCACTTGGAGGA AGGCAGCTTAACCTGGATGCCATCGTGCAGCACTTGGAGGA < 41bp 0.722633903327033 0.364633033916514 0.47969994 0.28987008 prediction 0.445267806654065 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517532 chr17:73517534 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_80023 0 0 1 12 73517526 73517547 mRNA hsa-miR-302d TSEN54 miRanda miRanda
6454 chr17 73517534 73517534 1 + G T SARC 73517532 + 73517512 73517552 41 AGGCAGCTTAACCTGGATGCCAGCGTGCAGCACTTGGAGGA AGGCAGCTTAACCTGGATGCCATCGTGCAGCACTTGGAGGA < 41bp 0.722633903327033 0.364633033916514 0.47969994 0.28987008 prediction 0.445267806654065 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517532 chr17:73517534 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_80023 0 0 1 12 73517526 73517547 mRNA hsa-miR-372 TSEN54 miRanda miRanda
6455 chr17 73517534 73517534 1 + G T SARC 73517532 + 73517512 73517552 41 AGGCAGCTTAACCTGGATGCCAGCGTGCAGCACTTGGAGGA AGGCAGCTTAACCTGGATGCCATCGTGCAGCACTTGGAGGA < 41bp 0.722633903327033 0.364633033916514 0.47969994 0.28987008 prediction 0.445267806654065 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517532 chr17:73517534 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_80023 0 0 1 12 73517526 73517547 mRNA hsa-miR-373 TSEN54 miRanda miRanda
6456 chr17 73517534 73517534 1 + G T SARC 73517532 + 73517512 73517552 41 AGGCAGCTTAACCTGGATGCCAGCGTGCAGCACTTGGAGGA AGGCAGCTTAACCTGGATGCCATCGTGCAGCACTTGGAGGA < 41bp 0.722633903327033 0.364633033916514 0.47969994 0.28987008 prediction 0.445267806654065 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517532 chr17:73517534 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_80023 0 0 1 12 73517527 73517547 mRNA hsa-miR-520e TSEN54 miRanda miRanda
6457 chr17 73517534 73517534 1 + G T SARC 73517532 + 73517512 73517552 41 AGGCAGCTTAACCTGGATGCCAGCGTGCAGCACTTGGAGGA AGGCAGCTTAACCTGGATGCCATCGTGCAGCACTTGGAGGA < 41bp 0.722633903327033 0.364633033916514 0.47969994 0.28987008 prediction 0.445267806654065 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517532 chr17:73517534 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_80023 0 0 1 12 73517526 73517547 mRNA hsa-miR-520a-3p TSEN54 miRanda miRanda
6458 chr17 73517534 73517534 1 + G T SARC 73517532 + 73517512 73517552 41 AGGCAGCTTAACCTGGATGCCAGCGTGCAGCACTTGGAGGA AGGCAGCTTAACCTGGATGCCATCGTGCAGCACTTGGAGGA < 41bp 0.722633903327033 0.364633033916514 0.47969994 0.28987008 prediction 0.445267806654065 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517532 chr17:73517534 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_80023 0 0 1 12 73517527 73517547 mRNA hsa-miR-520b TSEN54 miRanda miRanda
6459 chr17 73517534 73517534 1 + G T SARC 73517532 + 73517512 73517552 41 AGGCAGCTTAACCTGGATGCCAGCGTGCAGCACTTGGAGGA AGGCAGCTTAACCTGGATGCCATCGTGCAGCACTTGGAGGA < 41bp 0.722633903327033 0.364633033916514 0.47969994 0.28987008 prediction 0.445267806654065 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517532 chr17:73517534 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_80023 0 0 1 12 73517526 73517547 mRNA hsa-miR-520c-3p TSEN54 miRanda miRanda
6460 chr17 73517534 73517534 1 + G T SARC 73517532 + 73517512 73517552 41 AGGCAGCTTAACCTGGATGCCAGCGTGCAGCACTTGGAGGA AGGCAGCTTAACCTGGATGCCATCGTGCAGCACTTGGAGGA < 41bp 0.722633903327033 0.364633033916514 0.47969994 0.28987008 prediction 0.445267806654065 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517532 chr17:73517534 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_80023 0 0 1 12 73517526 73517547 mRNA hsa-miR-520d-3p TSEN54 miRanda miRanda
6461 chr17 73517534 73517534 1 + G T SARC 73517532 + 73517512 73517552 41 AGGCAGCTTAACCTGGATGCCAGCGTGCAGCACTTGGAGGA AGGCAGCTTAACCTGGATGCCATCGTGCAGCACTTGGAGGA < 41bp 0.722633903327033 0.364633033916514 0.47969994 0.28987008 prediction 0.445267806654065 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517532 chr17:73517534 nonsynonymous SNV 0.044 0 23 hm5C_associated_SNPs_80023 0 0 1 12 73517532 73517547 mRNA hsa-miR-302e TSEN54 miRanda miRanda
6462 chr15 83503023 83503023 1 + C T rs187268195 83503021 + 83503001 83503041 41 GCTGGTCTTGAACTCCTGACCTCGTGATCCACCTGCCTTGG GCTGGTCTTGAACTCCTGACCTTGTGATCCACCTGCCTTGG < 41bp 0.73357041266549 0.510969519201244 0.1571227 0.10169503 prediction 0.445201786928492 Functional Loss - WHAMM ENSG00000156232 UTR3 Human protein_coding chr15:83503021 chr15:83503023 . . 0 23 hm5C_associated_SNPs_80045 0 0 1 5 83503002 83503024 mRNA hsa-let-7e WHAMM miRanda miRanda
6463 chr15 83503023 83503023 1 + C T rs187268195 83503021 + 83503001 83503041 41 GCTGGTCTTGAACTCCTGACCTCGTGATCCACCTGCCTTGG GCTGGTCTTGAACTCCTGACCTTGTGATCCACCTGCCTTGG < 41bp 0.73357041266549 0.510969519201244 0.1571227 0.10169503 prediction 0.445201786928492 Functional Loss - WHAMM ENSG00000156232 UTR3 Human protein_coding chr15:83503021 chr15:83503023 . . 0 23 hm5C_associated_SNPs_80045 0 0 1 5 83503002 83503024 mRNA hsa-let-7g WHAMM miRanda miRanda
6464 chr15 83503023 83503023 1 + C T rs187268195 83503021 + 83503001 83503041 41 GCTGGTCTTGAACTCCTGACCTCGTGATCCACCTGCCTTGG GCTGGTCTTGAACTCCTGACCTTGTGATCCACCTGCCTTGG < 41bp 0.73357041266549 0.510969519201244 0.1571227 0.10169503 prediction 0.445201786928492 Functional Loss - WHAMM ENSG00000156232 UTR3 Human protein_coding chr15:83503021 chr15:83503023 . . 0 23 hm5C_associated_SNPs_80045 0 0 1 5 83503002 83503024 mRNA hsa-let-7i WHAMM miRanda miRanda
6465 chr15 83503023 83503023 1 + C T rs187268195 83503021 + 83503001 83503041 41 GCTGGTCTTGAACTCCTGACCTCGTGATCCACCTGCCTTGG GCTGGTCTTGAACTCCTGACCTTGTGATCCACCTGCCTTGG < 41bp 0.73357041266549 0.510969519201244 0.1571227 0.10169503 prediction 0.445201786928492 Functional Loss - WHAMM ENSG00000156232 UTR3 Human protein_coding chr15:83503021 chr15:83503023 . . 0 23 hm5C_associated_SNPs_80045 0 0 1 5 83503016 83503038 mRNA hsa-miR-449a WHAMM miRanda miRanda
6466 chr15 83503023 83503023 1 + C T rs187268195 83503021 + 83503001 83503041 41 GCTGGTCTTGAACTCCTGACCTCGTGATCCACCTGCCTTGG GCTGGTCTTGAACTCCTGACCTTGTGATCCACCTGCCTTGG < 41bp 0.73357041266549 0.510969519201244 0.1571227 0.10169503 prediction 0.445201786928492 Functional Loss - WHAMM ENSG00000156232 UTR3 Human protein_coding chr15:83503021 chr15:83503023 . . 0 23 hm5C_associated_SNPs_80045 0 0 1 5 83503016 83503038 mRNA hsa-miR-449b WHAMM miRanda miRanda
6467 chr19 9453173 9453173 1 + G A LIHC 9453170 + 9453150 9453190 41 AAAACACAGGCGAACTCACACTGGAGAAAAGCCTTATGAAT AAAACACAGGCGAACTCACACTGAAGAAAAGCCTTATGAAT < 41bp 0.722592923752173 0.499814441960592 0.271959 0.089566916 prediction 0.445185847504346 Functional Loss - ZNF559 ENSG00000188321 CDS Human protein_coding chr19:9453170 chr19:9453173 nonsynonymous SNV 0.961 3 24 hm5C_associated_SNPs_80056 0 0 1 7 9453153 9453174 mRNA hsa-miR-199a-5p ZNF559 miRanda miRanda
6468 chr19 9453173 9453173 1 + G A LIHC 9453170 + 9453150 9453190 41 AAAACACAGGCGAACTCACACTGGAGAAAAGCCTTATGAAT AAAACACAGGCGAACTCACACTGAAGAAAAGCCTTATGAAT < 41bp 0.722592923752173 0.499814441960592 0.271959 0.089566916 prediction 0.445185847504346 Functional Loss - ZNF559 ENSG00000188321 CDS Human protein_coding chr19:9453170 chr19:9453173 nonsynonymous SNV 0.961 3 24 hm5C_associated_SNPs_80056 0 0 1 7 9453169 9453193 mRNA hsa-miR-181a ZNF559 miRanda miRanda
6469 chr19 9453173 9453173 1 + G A LIHC 9453170 + 9453150 9453190 41 AAAACACAGGCGAACTCACACTGGAGAAAAGCCTTATGAAT AAAACACAGGCGAACTCACACTGAAGAAAAGCCTTATGAAT < 41bp 0.722592923752173 0.499814441960592 0.271959 0.089566916 prediction 0.445185847504346 Functional Loss - ZNF559 ENSG00000188321 CDS Human protein_coding chr19:9453170 chr19:9453173 nonsynonymous SNV 0.961 3 24 hm5C_associated_SNPs_80056 0 0 1 7 9453169 9453193 mRNA hsa-miR-181b ZNF559 miRanda miRanda
6470 chr19 9453173 9453173 1 + G A LIHC 9453170 + 9453150 9453190 41 AAAACACAGGCGAACTCACACTGGAGAAAAGCCTTATGAAT AAAACACAGGCGAACTCACACTGAAGAAAAGCCTTATGAAT < 41bp 0.722592923752173 0.499814441960592 0.271959 0.089566916 prediction 0.445185847504346 Functional Loss - ZNF559 ENSG00000188321 CDS Human protein_coding chr19:9453170 chr19:9453173 nonsynonymous SNV 0.961 3 24 hm5C_associated_SNPs_80056 0 0 1 7 9453172 9453193 mRNA hsa-miR-181c ZNF559 miRanda miRanda
6471 chr19 9453173 9453173 1 + G A LIHC 9453170 + 9453150 9453190 41 AAAACACAGGCGAACTCACACTGGAGAAAAGCCTTATGAAT AAAACACAGGCGAACTCACACTGAAGAAAAGCCTTATGAAT < 41bp 0.722592923752173 0.499814441960592 0.271959 0.089566916 prediction 0.445185847504346 Functional Loss - ZNF559 ENSG00000188321 CDS Human protein_coding chr19:9453170 chr19:9453173 nonsynonymous SNV 0.961 3 24 hm5C_associated_SNPs_80056 0 0 1 7 9453153 9453174 mRNA hsa-miR-199b-5p ZNF559 miRanda miRanda
6472 chr19 9453173 9453173 1 + G A LIHC 9453170 + 9453150 9453190 41 AAAACACAGGCGAACTCACACTGGAGAAAAGCCTTATGAAT AAAACACAGGCGAACTCACACTGAAGAAAAGCCTTATGAAT < 41bp 0.722592923752173 0.499814441960592 0.271959 0.089566916 prediction 0.445185847504346 Functional Loss - ZNF559 ENSG00000188321 CDS Human protein_coding chr19:9453170 chr19:9453173 nonsynonymous SNV 0.961 3 24 hm5C_associated_SNPs_80056 0 0 1 7 9453150 9453173 mRNA hsa-miR-125a-3p ZNF559 miRanda miRanda
6473 chr19 9453173 9453173 1 + G A LIHC 9453170 + 9453150 9453190 41 AAAACACAGGCGAACTCACACTGGAGAAAAGCCTTATGAAT AAAACACAGGCGAACTCACACTGAAGAAAAGCCTTATGAAT < 41bp 0.722592923752173 0.499814441960592 0.271959 0.089566916 prediction 0.445185847504346 Functional Loss - ZNF559 ENSG00000188321 CDS Human protein_coding chr19:9453170 chr19:9453173 nonsynonymous SNV 0.961 3 24 hm5C_associated_SNPs_80056 0 0 1 7 9453165 9453193 mRNA hsa-miR-181d ZNF559 miRanda miRanda
6474 chr17 62522265 62522265 1 + G A BLCA 62522262 + 62522242 62522282 41 CAAGAAAGAGATTAACAGAACAAGAATTACATGATGTATCA CAAGAAAGAGATTAACAGAACAAAAATTACATGATGTATCA < 41bp 0.732968347905836 0.510427738995114 0.52065724 0.30914778 prediction 0.445081217821444 Functional Loss - CEP95 ENSG00000258890 CDS Human protein_coding chr17:62522262 chr17:62522265 nonsynonymous SNV 0.755 1 24 hm5C_associated_SNPs_80087 0 0 1 1 62522243 62522265 mRNA hsa-miR-375 CCDC45 miRanda miRanda
6475 chr10 70864509 70864509 1 + A T rs114132591 70864505 + 70864485 70864525 41 TACTGCTTTACCTTTTTTTCCTGGATATCTGTGTATTTTCA TACTGCTTTACCTTTTTTTCCTGGTTATCTGTGTATTTTCA < 41bp 0.722538405643306 0.460811587013354 0.31176442 0.22385433 prediction 0.445076811286612 Functional Loss - SRGN ENSG00000122862 UTR3 Human protein_coding chr10:70864505 chr10:70864509 . . 0 25 hm5C_associated_SNPs_80090 0 0 1 1 70864499 70864519 mRNA hsa-miR-376c SRGN miRanda miRanda
6476 chr11 113857438 113857438 1 + A T LUAD 113857434 + 113857414 113857454 41 ACGCTGCCGGCCACTGCCATCGGCACTCCTCTCATTGGTAA ACGCTGCCGGCCACTGCCATCGGCTCTCCTCTCATTGGTAA < 41bp 0.895012107104805 0.672485263396787 0.32622394 0.30525446 prediction 0.445053687416036 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113857434 chr11:113857438 nonsynonymous SNV 0.959 4 25 hm5C_associated_SNPs_80094 0 0 0 1 113857438 113857450 mRNA hsa-miR-411 HTR3A miRanda miRanda
6477 chr8 92378836 92378836 1 + C T LUAD 92378834 + 92378814 92378854 41 CTGCAGCAGGTGAAAATTATCTCAATAAACAACCCGCTTGT CTGCAGCAGGTGAAAATTATCTTAATAAACAACCCGCTTGT < 41bp 0.722466824498378 0.42332131631691 0.38992333 0.13242665 prediction 0.444933648996756 Functional Loss - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92378834 chr8:92378836 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_80133 0 0 0 1 92378814 92378837 mRNA hsa-miR-539 SLC26A7 miRanda miRanda
6478 chr12 100926245 100926245 1 + G T LUSC 100926243 + 100926223 100926263 41 GTTTCTCCCACAGGTTTCTTCAGGAGAAGCATTACCAAAAA GTTTCTCCCACAGGTTTCTTCATGAGAAGCATTACCAAAAA < 41bp 0.899543812195077 0.677120471940547 0.5650809 0.106075495 prediction 0.444846680509062 Functional Loss - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100926243 chr12:100926245 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_80159 0 0 0 1 100926236 100926257 mRNA hsa-miR-155 NR1H4 miRanda miRanda
6479 chr2 173460625 173460625 1 + C T OV 173460622 + 173460602 173460642 41 GCTGCCTGGAAGCATTACAACACCAACCACGAGGCTGATGA GCTGCCTGGAAGCATTACAACACTAACCACGAGGCTGATGA < 41bp 0.737223276557138 0.514837171335245 0.019809663 0.04905832 prediction 0.444772210443787 Functional Loss - PDK1 ENSG00000152256 CDS Human protein_coding chr2:173460622 chr2:173460625 synonymous SNV . 0 24 hm5C_associated_SNPs_80184 0 0 1 1 173460625 173460647 mRNA hsa-miR-338-3p PDK1 miRanda miRanda
6480 chr19 7976353 7976353 1 + G T UCEC 7976350 + 7976330 7976370 41 GCAACAGGACAGTTTCCCTACAAGAACTGCAAGACGGACTT GCAACAGGACAGTTTCCCTACAATAACTGCAAGACGGACTT < 41bp 0.722342562687345 0.333159612850286 0.22087067 0.070513606 prediction 0.444685125374691 Functional Loss - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7976350 chr19:7976353 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_80219 0 0 1 1 7976345 7976365 mRNA hsa-miR-431 MAP2K7 miRanda miRanda
6481 chr21 40763152 40763152 1 + G T rs7279764 40763149 + 40763129 40763169 41 AGAGGCTTTTGTTCCACTCTCTAGAAAAATGCCCAGCAGTG AGAGGCTTTTGTTCCACTCTCTATAAAAATGCCCAGCAGTG < 41bp 0.722292756869646 0.351331831015196 0.26900995 0.41035503 prediction 0.444585513739292 Functional Loss - WRB;WRB-SH3BGR ENSG00000182093 intronic Human protein_coding chr21:40763149 chr21:40763152 . . 0 24 hm5C_associated_SNPs_80251 0 0 0 1 40763147 40763168 mRNA hsa-miR-330-5p WRB miRanda miRanda
6482 chr6 3114512 3114512 1 + C T rs17513574 3114510 + 3114490 3114530 41 CCCCTGGGTGAGACCAGAACCTCAGGGCTGATACTGTTGAG CCCCTGGGTGAGACCAGAACCTTAGGGCTGATACTGTTGAG < 41bp 0.74613605557466 0.523846632584687 0.13358912 0.16579652 prediction 0.444578845979947 Functional Loss - RIPK1 ENSG00000137275 UTR3 Human protein_coding chr6:3114510 chr6:3114512 . . 0 23 hm5C_associated_SNPs_80253 0 0 1 1 3114507 3114530 mRNA hsa-miR-421 RIPK1 miRanda miRanda
6483 chr17 67516411 67516411 1 + G T HNSC 67516408 + 67516388 67516428 41 TTCCTGAAACAATTGGTCTCCAGGGTGATGTGTGGATCTGC TTCCTGAAACAATTGGTCTCCAGTGTGATGTGTGGATCTGC < 41bp 0.722177545192429 0.345723595367286 0.77664495 0.19570038 prediction 0.444355090384859 Functional Loss - MAP2K6 ENSG00000108984 CDS Human protein_coding chr17:67516408 chr17:67516411 nonsynonymous SNV 0.843 3 24 hm5C_associated_SNPs_80336 0 0 0 2 67516394 67516413 mRNA hsa-miR-125b MAP2K6 miRanda miRanda
6484 chr17 67516411 67516411 1 + G T HNSC 67516408 + 67516388 67516428 41 TTCCTGAAACAATTGGTCTCCAGGGTGATGTGTGGATCTGC TTCCTGAAACAATTGGTCTCCAGTGTGATGTGTGGATCTGC < 41bp 0.722177545192429 0.345723595367286 0.77664495 0.19570038 prediction 0.444355090384859 Functional Loss - MAP2K6 ENSG00000108984 CDS Human protein_coding chr17:67516408 chr17:67516411 nonsynonymous SNV 0.843 3 24 hm5C_associated_SNPs_80336 0 0 0 2 67516389 67516413 mRNA hsa-miR-125a-5p MAP2K6 miRanda miRanda
6485 chr12 9020635 9020635 1 + G T UCEC 9020633 + 9020613 9020653 41 ACACGTTGGAGGCCTCAGGCCAGGGCTGTGTCTATGTGCAG ACACGTTGGAGGCCTCAGGCCATGGCTGTGTCTATGTGCAG < 41bp 0.72214682434002 0.364602656328943 0.5264043 0.2477347 prediction 0.44429364868004 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9020633 chr12:9020635 nonsynonymous SNV 0.986 0 23 hm5C_associated_SNPs_80371 0 0 0 1 9020630 9020650 mRNA hsa-miR-376c A2ML1 miRanda miRanda
6486 chr11 65714412 65714412 1 + C T BLCA 65714410 + 65714390 65714430 41 CTGCAGCAGAGGTCTCAGAGCTCAAGGCAGACAGCAAAGAA CTGCAGCAGAGGTCTCAGAGCTTAAGGCAGACAGCAAAGAA < 41bp 0.722139052486556 0.453660067164136 0.0628019 0.0673849 prediction 0.444278104973113 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65714410 chr11:65714412 unknown 0.005 0 23 hm5C_associated_SNPs_80373 0 0 0 1 65714400 65714422 mRNA hsa-miR-346 TSGA10IP miRanda miRanda
6487 chr1 161070003 161070003 1 + G A STAD 161070000 + 161069980 161070020 41 CCAGTCCACAGGTTTGCATCCTGGACTTTATCTAAATAGTG CCAGTCCACAGGTTTGCATCCTGAACTTTATCTAAATAGTG < 41bp 0.737630643097676 0.515514499260855 0.14781171 0.12092599 prediction 0.444232287673642 Functional Loss - KLHDC9 ENSG00000162755 CDS Human protein_coding chr1:161070000 chr1:161070003 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_80390 0 0 0 3 161070003 161070025 mRNA hsa-miR-96 KLHDC9 miRanda miRanda
6488 chr1 161070003 161070003 1 + G A STAD 161070000 + 161069980 161070020 41 CCAGTCCACAGGTTTGCATCCTGGACTTTATCTAAATAGTG CCAGTCCACAGGTTTGCATCCTGAACTTTATCTAAATAGTG < 41bp 0.737630643097676 0.515514499260855 0.14781171 0.12092599 prediction 0.444232287673642 Functional Loss - KLHDC9 ENSG00000162755 CDS Human protein_coding chr1:161070000 chr1:161070003 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_80390 0 0 0 3 161070001 161070025 mRNA hsa-miR-182 KLHDC9 miRanda miRanda
6489 chr1 161070003 161070003 1 + G A STAD 161070000 + 161069980 161070020 41 CCAGTCCACAGGTTTGCATCCTGGACTTTATCTAAATAGTG CCAGTCCACAGGTTTGCATCCTGAACTTTATCTAAATAGTG < 41bp 0.737630643097676 0.515514499260855 0.14781171 0.12092599 prediction 0.444232287673642 Functional Loss - KLHDC9 ENSG00000162755 CDS Human protein_coding chr1:161070000 chr1:161070003 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_80390 0 0 0 3 161069999 161070025 mRNA hsa-miR-183 KLHDC9 miRanda miRanda
6490 chr10 72633155 72633155 1 + G A CESC 72633152 + 72633132 72633172 41 TCATTGGTGTTGTATAGTGACAAGAAGTACAGGAACTATCA TCATTGGTGTTGTATAGTGACAAAAAGTACAGGAACTATCA < 41bp 0.722054977228897 0.492402599226582 0.17131251 0.045170248 prediction 0.444109954457794 Functional Loss - SGPL1 ENSG00000166224 CDS Human protein_coding chr10:72633152 chr10:72633155 synonymous SNV . 0 24 hm5C_associated_SNPs_80426 0 0 1 1 72633144 72633165 mRNA hsa-miR-486-5p SGPL1 miRanda miRanda
6491 chr6 1395184 1395184 1 + G A rs115416648 1395181 + 1395161 1395201 41 GGACGGATTCAAGTCACATGCACGCGGATAGCAGTAAGCCA GGACGGATTCAAGTCACATGCACACGGATAGCAGTAAGCCA < 41bp 0.722049238358067 0.497132076886684 0.2943703 0.07900661 prediction 0.444098476716135 Functional Loss - FOXF2 ENSG00000137273 UTR3 Human protein_coding chr6:1395181 chr6:1395184 . . 0 24 hm5C_associated_SNPs_80432 0 0 1 1 1395182 1395204 mRNA hsa-miR-218 FOXF2 miRanda miRanda
6492 chr16 3526287 3526287 1 + C T rs543443643 3526285 + 3526265 3526305 41 TCAGCCTGCGCCTCCTCTGCCACGATGACATAGACACTGTG TCAGCCTGCGCCTCCTCTGCCATGATGACATAGACACTGTG < 41bp 0.834913467535333 0.612880401158232 0.41613632 0.3616226 prediction 0.444066132754201 Functional Loss - NAA60 ENSG00000122390;ENSG00000262621 CDS Human other chr16:3526285 chr16:3526287 synonymous SNV . 0 23 hm5C_associated_SNPs_80442 0 0 1 3 3526287 3526307 mRNA hsa-miR-27a NAT15 miRanda miRanda
6493 chr16 3526287 3526287 1 + C T rs543443643 3526285 + 3526265 3526305 41 TCAGCCTGCGCCTCCTCTGCCACGATGACATAGACACTGTG TCAGCCTGCGCCTCCTCTGCCATGATGACATAGACACTGTG < 41bp 0.834913467535333 0.612880401158232 0.41613632 0.3616226 prediction 0.444066132754201 Functional Loss - NAA60 ENSG00000122390;ENSG00000262621 CDS Human other chr16:3526285 chr16:3526287 synonymous SNV . 0 23 hm5C_associated_SNPs_80442 0 0 1 3 3526287 3526307 mRNA hsa-miR-27b NAT15 miRanda miRanda
6494 chr16 3526287 3526287 1 + C T rs543443643 3526285 + 3526265 3526305 41 TCAGCCTGCGCCTCCTCTGCCACGATGACATAGACACTGTG TCAGCCTGCGCCTCCTCTGCCATGATGACATAGACACTGTG < 41bp 0.834913467535333 0.612880401158232 0.41613632 0.3616226 prediction 0.444066132754201 Functional Loss - NAA60 ENSG00000122390;ENSG00000262621 CDS Human other chr16:3526285 chr16:3526287 synonymous SNV . 0 23 hm5C_associated_SNPs_80442 0 0 1 3 3526285 3526306 mRNA hsa-miR-128 NAT15 miRanda miRanda
6495 chr20 60963388 60963388 1 + C T BRCA 60963386 + 60963366 60963406 41 GTGAGTCAGATGATTCCATTCTCCGATTGGCCAAGGCCGAT GTGAGTCAGATGATTCCATTCTTCGATTGGCCAAGGCCGAT < 41bp 0.722020721514729 0.473930351350377 0.112280935 0.061510235 prediction 0.444041443029458 Functional Loss - RPS21 ENSG00000171858 CDS Human protein_coding chr20:60963386 chr20:60963388 synonymous SNV . 0 23 hm5C_associated_SNPs_80449 0 0 1 1 60963376 60963400 mRNA hsa-miR-182 RPS21 miRanda miRanda
6496 chr4 24801236 24801236 1 + G A rs11544040 24801233 + 24801213 24801253 41 TCGGCGGAGCCCAACTCTGACTCGGCGGAGTGGATCCGAGA TCGGCGGAGCCCAACTCTGACTCAGCGGAGTGGATCCGAGA < 41bp 0.775234534140267 0.553268544045009 0.058810472 0.038137436 prediction 0.443931980190515 Functional Loss - SOD3 ENSG00000109610 CDS Human protein_coding chr4:24801233 chr4:24801236 synonymous SNV . 0 24 hm5C_associated_SNPs_80497 0 0 0 1 24801231 24801251 mRNA hsa-miR-127-3p SOD3 miRanda miRanda
6497 chr12 129431890 129431890 1 + G T LUSC 129431888 + 129431868 129431908 41 TGCTTTGTGTTTCAGAGCCGCTGGGGTACGATTGATTGGAG TGCTTTGTGTTTCAGAGCCGCTTGGGTACGATTGATTGGAG < 41bp 0.721964280514271 0.369507703002844 0.46017885 0.11681858 prediction 0.443928561028541 Functional Loss - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129431888 chr12:129431890 nonsynonymous SNV 0.065 4 23 hm5C_associated_SNPs_80499 0 0 0 2 129431888 129431911 mRNA hsa-miR-150 GLT1D1 miRanda miRanda
6498 chr12 129431890 129431890 1 + G T LUSC 129431888 + 129431868 129431908 41 TGCTTTGTGTTTCAGAGCCGCTGGGGTACGATTGATTGGAG TGCTTTGTGTTTCAGAGCCGCTTGGGTACGATTGATTGGAG < 41bp 0.721964280514271 0.369507703002844 0.46017885 0.11681858 prediction 0.443928561028541 Functional Loss - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129431888 chr12:129431890 nonsynonymous SNV 0.065 4 23 hm5C_associated_SNPs_80499 0 0 0 2 129431883 129431900 mRNA hsa-miR-487b GLT1D1 miRanda miRanda
6499 chr12 129431891 129431891 1 + G T THCA 129431888 + 129431868 129431908 41 TGCTTTGTGTTTCAGAGCCGCTGGGGTACGATTGATTGGAG TGCTTTGTGTTTCAGAGCCGCTGTGGTACGATTGATTGGAG < 41bp 0.721964280514271 0.325547470120931 0.46017885 0.11094585 prediction 0.443928561028541 Functional Loss - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129431888 chr12:129431891 nonsynonymous SNV 0.084 4 24 hm5C_associated_SNPs_80500 0 0 0 2 129431888 129431911 mRNA hsa-miR-150 GLT1D1 miRanda miRanda
6500 chr12 129431891 129431891 1 + G T THCA 129431888 + 129431868 129431908 41 TGCTTTGTGTTTCAGAGCCGCTGGGGTACGATTGATTGGAG TGCTTTGTGTTTCAGAGCCGCTGTGGTACGATTGATTGGAG < 41bp 0.721964280514271 0.325547470120931 0.46017885 0.11094585 prediction 0.443928561028541 Functional Loss - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129431888 chr12:129431891 nonsynonymous SNV 0.084 4 24 hm5C_associated_SNPs_80500 0 0 0 2 129431883 129431900 mRNA hsa-miR-487b GLT1D1 miRanda miRanda
6501 chr22 21363671 21363671 1 + G A SKCM 21363668 + 21363648 21363688 41 AGCCGCTTCATGAGCAGAGACACGAACCCAGAGCCAGTGCC AGCCGCTTCATGAGCAGAGACACAAACCCAGAGCCAGTGCC < 41bp 0.754523684486067 0.532599301960532 0.035729647 0.015423 prediction 0.443848765051069 Functional Loss - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363668 chr22:21363671 . . 0 24 hm5C_associated_SNPs_80532 0 0 0 4 21363649 21363672 mRNA hsa-miR-187 FLJ39582 miRanda miRanda
6502 chr22 21363671 21363671 1 + G A SKCM 21363668 + 21363648 21363688 41 AGCCGCTTCATGAGCAGAGACACGAACCCAGAGCCAGTGCC AGCCGCTTCATGAGCAGAGACACAAACCCAGAGCCAGTGCC < 41bp 0.754523684486067 0.532599301960532 0.035729647 0.015423 prediction 0.443848765051069 Functional Loss - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363668 chr22:21363671 . . 0 24 hm5C_associated_SNPs_80532 0 0 0 4 21363662 21363685 mRNA hsa-miR-149 FLJ39582 miRanda miRanda
6503 chr22 21363671 21363671 1 + G A SKCM 21363668 + 21363648 21363688 41 AGCCGCTTCATGAGCAGAGACACGAACCCAGAGCCAGTGCC AGCCGCTTCATGAGCAGAGACACAAACCCAGAGCCAGTGCC < 41bp 0.754523684486067 0.532599301960532 0.035729647 0.015423 prediction 0.443848765051069 Functional Loss - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363668 chr22:21363671 . . 0 24 hm5C_associated_SNPs_80532 0 0 0 4 21363660 21363681 mRNA hsa-miR-330-5p FLJ39582 miRanda miRanda
6504 chr22 21363671 21363671 1 + G A SKCM 21363668 + 21363648 21363688 41 AGCCGCTTCATGAGCAGAGACACGAACCCAGAGCCAGTGCC AGCCGCTTCATGAGCAGAGACACAAACCCAGAGCCAGTGCC < 41bp 0.754523684486067 0.532599301960532 0.035729647 0.015423 prediction 0.443848765051069 Functional Loss - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363668 chr22:21363671 . . 0 24 hm5C_associated_SNPs_80532 0 0 0 4 21363661 21363681 mRNA hsa-miR-326 FLJ39582 miRanda miRanda
6505 chr9 114429103 114429103 1 + G T HNSC 114429101 + 114429081 114429121 41 TCCCTTTGTTTCAGGTCTCTCAGGCAGCTGCAGAGCTTCAA TCCCTTTGTTTCAGGTCTCTCATGCAGCTGCAGAGCTTCAA < 41bp 0.721865398878595 0.369443459057325 0.6789068 0.046822816 prediction 0.443730797757189 Functional Loss - DNAJC25-GNG10;GNG10 ENSG00000059769;ENSG00000242616;ENSG00000244115 CDS Human other chr9:114429101 chr9:114429103 nonsynonymous SNV 0.971 3 23 hm5C_associated_SNPs_80572 0 0 1 1 114429095 114429110 mRNA hsa-miR-22 GNG10 miRanda miRanda
6506 chrX 103218018 103218018 1 + G A rs192122585 103218015 + 103217995 103218035 41 TATTGTCTCTTCTGAACAAACTCGAGACTTTCACAGGGCAC TATTGTCTCTTCTGAACAAACTCAAGACTTTCACAGGGCAC < 41bp 0.788668684340638 0.566820693841783 0.7137651 0.35001954 prediction 0.44369598099771 Functional Loss - TMSB15B ENSG00000158427 UTR5 Human protein_coding chrX:103218015 chrX:103218018 . . 0 24 hm5C_associated_SNPs_80584 0 0 1 1 103218014 103218035 mRNA hsa-miR-874 TMSB15B miRanda miRanda
6507 chr11 75440015 75440015 1 + C T COAD 75440013 + 75439993 75440033 41 GCTTTGGTTTAATACCCTACCGCCGGCCCATCACCACTGTG GCTTTGGTTTAATACCCTACCGTCGGCCCATCACCACTGTG < 41bp 0.763004083156317 0.541174581753437 0.15640172 0.24525067 prediction 0.44365900280576 Functional Loss - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75440013 chr11:75440015 synonymous SNV . 0 23 hm5C_associated_SNPs_80604 0 0 0 1 75440014 75440034 mRNA hsa-miR-128 MOGAT2 miRanda miRanda
6508 chr13 32527092 32527092 1 + G A PRAD 32527089 + 32527069 32527109 41 CGCCAAGTGGAGCCCCCGGCCAAGAAGCTAGCCACACCAGC CGCCAAGTGGAGCCCCCGGCCAAAAAGCTAGCCACACCAGC < 41bp 0.792377881861011 0.570595134488116 0.23285016 0.16976571 prediction 0.443565494745788 Functional Loss - EEF1DP3 ENSG00000229715 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr13:32527089 chr13:32527092 . . 0 24 hm5C_associated_SNPs_80630 0 0 0 1 32527088 32527110 mRNA hsa-miR-138 EEF1DP3 miRanda miRanda
6509 chr3 122808134 122808134 1 + C T SKCM 122808131 + 122808111 122808151 41 AATAATGTACTGGTGCTTTACTCCAAATCTGGTGAGTGTCC AATAATGTACTGGTGCTTTACTCTAAATCTGGTGAGTGTCC < 41bp 0.750341528775771 0.528608946296787 0.95990026 0.9265916 prediction 0.443465164957968 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122808131 chr3:122808134 synonymous SNV . 0 24 hm5C_associated_SNPs_80662 0 0 1 1 122808133 122808141 mRNA hsa-miR-22 PDIA5 miRanda miRanda
6510 chr19 19168730 19168730 1 + G A rs11549381 19168727 + 19168707 19168747 41 CTACCAGAGGGGGCAAAGGGCACGTCCCATCACTCACTGCC CTACCAGAGGGGGCAAAGGGCACATCCCATCACTCACTGCC < 41bp 0.721689657138154 0.487911211495151 0.07936978 0.14068538 prediction 0.443379314276308 Functional Loss - ARMC6 ENSG00000105676 UTR3 Human protein_coding chr19:19168727 chr19:19168730 . . 0 24 hm5C_associated_SNPs_80693 0 0 1 4 19168729 19168748 mRNA hsa-miR-34a ARMC6 miRanda miRanda
6511 chr19 19168730 19168730 1 + G A rs11549381 19168727 + 19168707 19168747 41 CTACCAGAGGGGGCAAAGGGCACGTCCCATCACTCACTGCC CTACCAGAGGGGGCAAAGGGCACATCCCATCACTCACTGCC < 41bp 0.721689657138154 0.487911211495151 0.07936978 0.14068538 prediction 0.443379314276308 Functional Loss - ARMC6 ENSG00000105676 UTR3 Human protein_coding chr19:19168727 chr19:19168730 . . 0 24 hm5C_associated_SNPs_80693 0 0 1 4 19168727 19168748 mRNA hsa-miR-34c-5p ARMC6 miRanda miRanda
6512 chr19 19168730 19168730 1 + G A rs11549381 19168727 + 19168707 19168747 41 CTACCAGAGGGGGCAAAGGGCACGTCCCATCACTCACTGCC CTACCAGAGGGGGCAAAGGGCACATCCCATCACTCACTGCC < 41bp 0.721689657138154 0.487911211495151 0.07936978 0.14068538 prediction 0.443379314276308 Functional Loss - ARMC6 ENSG00000105676 UTR3 Human protein_coding chr19:19168727 chr19:19168730 . . 0 24 hm5C_associated_SNPs_80693 0 0 1 4 19168728 19168748 mRNA hsa-miR-449a ARMC6 miRanda miRanda
6513 chr19 19168730 19168730 1 + G A rs11549381 19168727 + 19168707 19168747 41 CTACCAGAGGGGGCAAAGGGCACGTCCCATCACTCACTGCC CTACCAGAGGGGGCAAAGGGCACATCCCATCACTCACTGCC < 41bp 0.721689657138154 0.487911211495151 0.07936978 0.14068538 prediction 0.443379314276308 Functional Loss - ARMC6 ENSG00000105676 UTR3 Human protein_coding chr19:19168727 chr19:19168730 . . 0 24 hm5C_associated_SNPs_80693 0 0 1 4 19168728 19168748 mRNA hsa-miR-449b ARMC6 miRanda miRanda
6514 chr11 105948587 105948587 1 + G A LUSC 105948584 + 105948564 105948604 41 GAGGAGAAGGAGCGCATTGGCCAGTTCGTCTTTGCCCGGGA GAGGAGAAGGAGCGCATTGGCCAATTCGTCTTTGCCCGGGA < 41bp 0.761221305215675 0.539536022739818 0.030991763 0.012648642 prediction 0.443370564951713 Functional Loss - AASDHPPT ENSG00000149313 CDS Human protein_coding chr11:105948584 chr11:105948587 synonymous SNV . 0 24 hm5C_associated_SNPs_80696 0 0 1 2 105948568 105948589 mRNA hsa-miR-193a-3p AASDHPPT miRanda miRanda
6515 chr11 105948587 105948587 1 + G A LUSC 105948584 + 105948564 105948604 41 GAGGAGAAGGAGCGCATTGGCCAGTTCGTCTTTGCCCGGGA GAGGAGAAGGAGCGCATTGGCCAATTCGTCTTTGCCCGGGA < 41bp 0.761221305215675 0.539536022739818 0.030991763 0.012648642 prediction 0.443370564951713 Functional Loss - AASDHPPT ENSG00000149313 CDS Human protein_coding chr11:105948584 chr11:105948587 synonymous SNV . 0 24 hm5C_associated_SNPs_80696 0 0 1 2 105948568 105948589 mRNA hsa-miR-193b AASDHPPT miRanda miRanda
6516 chr9 34658543 34658543 1 + C T COAD 34658540 + 34658520 34658560 41 GCCCTGACCCACCCCAGGGCCTGCGGGTAGAGTCAGTACCA GCCCTGACCCACCCCAGGGCCTGTGGGTAGAGTCAGTACCA < 41bp 0.721668649557342 0.499881470131407 0.13116887 0.10063955 prediction 0.443337299114683 Functional Loss - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34658540 chr9:34658543 nonsynonymous SNV 0.841 3 24 hm5C_associated_SNPs_80713 0 0 0 2 34658540 34658563 mRNA hsa-miR-486-5p IL11RA miRanda miRanda
6517 chr9 34658543 34658543 1 + C T COAD 34658540 + 34658520 34658560 41 GCCCTGACCCACCCCAGGGCCTGCGGGTAGAGTCAGTACCA GCCCTGACCCACCCCAGGGCCTGTGGGTAGAGTCAGTACCA < 41bp 0.721668649557342 0.499881470131407 0.13116887 0.10063955 prediction 0.443337299114683 Functional Loss - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34658540 chr9:34658543 nonsynonymous SNV 0.841 3 24 hm5C_associated_SNPs_80713 0 0 0 2 34658542 34658565 mRNA hsa-miR-490-3p IL11RA miRanda miRanda
6518 chr8 15517056 15517056 1 + C T SKCM 15517053 + 15517033 15517073 41 TCCTACATTCATGCATTTTCCTCCAAAAGGCAGACCTAAGA TCCTACATTCATGCATTTTCCTCTAAAAGGCAGACCTAAGA < 41bp 0.770140781950338 0.548575402265859 0.9654387 0.9422401 prediction 0.443130759368957 Functional Loss - TUSC3 ENSG00000104723 CDS Human protein_coding chr8:15517053 chr8:15517056 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_80792 0 0 1 1 15517046 15517068 mRNA hsa-miR-346 TUSC3 miRanda miRanda
6519 chr1 93300390 93300390 1 + G A COAD 93300387 + 93300367 93300407 41 TAGTCTGCGCAGCGTATGCACACGAACTGCCAAAATATGGT TAGTCTGCGCAGCGTATGCACACAAACTGCCAAAATATGGT < 41bp 0.753088357261501 0.531584320420447 0.23429728 0.14599857 prediction 0.443008073682107 Functional Loss - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93300387 chr1:93300390 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_80834 0 0 1 3 93300378 93300400 mRNA hsa-miR-96 RPL5 miRanda miRanda
6520 chr1 93300390 93300390 1 + G A COAD 93300387 + 93300367 93300407 41 TAGTCTGCGCAGCGTATGCACACGAACTGCCAAAATATGGT TAGTCTGCGCAGCGTATGCACACAAACTGCCAAAATATGGT < 41bp 0.753088357261501 0.531584320420447 0.23429728 0.14599857 prediction 0.443008073682107 Functional Loss - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93300387 chr1:93300390 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_80834 0 0 1 3 93300377 93300400 mRNA hsa-miR-182 RPL5 miRanda miRanda
6521 chr1 93300390 93300390 1 + G A COAD 93300387 + 93300367 93300407 41 TAGTCTGCGCAGCGTATGCACACGAACTGCCAAAATATGGT TAGTCTGCGCAGCGTATGCACACAAACTGCCAAAATATGGT < 41bp 0.753088357261501 0.531584320420447 0.23429728 0.14599857 prediction 0.443008073682107 Functional Loss - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93300387 chr1:93300390 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_80834 0 0 1 3 93300379 93300400 mRNA hsa-miR-1271 RPL5 miRanda miRanda
6522 chr2 33003003 33003003 1 + G A SKCM 33003000 + 33002980 33003020 41 ATTTGGCCTTGGAAGACTATCAAGGTTCAGCAAAGGCATTT ATTTGGCCTTGGAAGACTATCAAAGTTCAGCAAAGGCATTT < 41bp 0.721496272694916 0.496949845951901 0.9382942 0.80197704 prediction 0.442992545389831 Functional Loss - TTC27 ENSG00000018699 CDS Human protein_coding chr2:33003000 chr2:33003003 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_80843 0 0 0 1 33003002 33003023 mRNA hsa-miR-203 TTC27 miRanda miRanda
6523 chr17 32598732 32598732 1 + G T SARC 32598729 + 32598709 32598749 41 TCCACAGCTTCAAGACCAAACTGGACAAGGAGATCTGTGCT TCCACAGCTTCAAGACCAAACTGTACAAGGAGATCTGTGCT < 41bp 0.893129938855546 0.671647309066478 0.19761029 0.121002585 prediction 0.442965259578136 Functional Loss - CCL7 ENSG00000108688 CDS Human protein_coding chr17:32598729 chr17:32598732 nonsynonymous SNV 0.054 1 24 hm5C_associated_SNPs_80851 0 0 0 1 32598716 32598734 mRNA hsa-miR-145 CCL7 miRanda miRanda
6524 chr1 76226875 76226875 1 + G T CESC 76226873 + 76226853 76226893 41 AACTAGCTAGAATGAGTTACCAGAGAGCAGCTTGGGAGGTT AACTAGCTAGAATGAGTTACCATAGAGCAGCTTGGGAGGTT < 41bp 0.721303223394751 0.394740629941583 0.8637093 0.7402414 prediction 0.442606446789501 Functional Loss - ACADM ENSG00000117054 CDS Human protein_coding chr1:76226873 chr1:76226875 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_80991 0 0 1 4 76226870 76226891 mRNA hsa-miR-150 ACADM miRanda miRanda
6525 chr1 76226875 76226875 1 + G T CESC 76226873 + 76226853 76226893 41 AACTAGCTAGAATGAGTTACCAGAGAGCAGCTTGGGAGGTT AACTAGCTAGAATGAGTTACCATAGAGCAGCTTGGGAGGTT < 41bp 0.721303223394751 0.394740629941583 0.8637093 0.7402414 prediction 0.442606446789501 Functional Loss - ACADM ENSG00000117054 CDS Human protein_coding chr1:76226873 chr1:76226875 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_80991 0 0 1 4 76226857 76226878 mRNA hsa-miR-330-5p ACADM miRanda miRanda
6526 chr1 76226875 76226875 1 + G T CESC 76226873 + 76226853 76226893 41 AACTAGCTAGAATGAGTTACCAGAGAGCAGCTTGGGAGGTT AACTAGCTAGAATGAGTTACCATAGAGCAGCTTGGGAGGTT < 41bp 0.721303223394751 0.394740629941583 0.8637093 0.7402414 prediction 0.442606446789501 Functional Loss - ACADM ENSG00000117054 CDS Human protein_coding chr1:76226873 chr1:76226875 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_80991 0 0 1 4 76226859 76226878 mRNA hsa-miR-326 ACADM miRanda miRanda
6527 chr1 76226875 76226875 1 + G T CESC 76226873 + 76226853 76226893 41 AACTAGCTAGAATGAGTTACCAGAGAGCAGCTTGGGAGGTT AACTAGCTAGAATGAGTTACCATAGAGCAGCTTGGGAGGTT < 41bp 0.721303223394751 0.394740629941583 0.8637093 0.7402414 prediction 0.442606446789501 Functional Loss - ACADM ENSG00000117054 CDS Human protein_coding chr1:76226873 chr1:76226875 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_80991 0 0 1 4 76226867 76226886 mRNA hsa-miR-520d-3p ACADM miRanda miRanda
6528 chr19 8327196 8327196 1 + G C rs12891 8327192 + 8327172 8327212 41 CTCTGGGCAACTGGACAGATCTGGGAGCCAGCAGCTGGATG CTCTGGGCAACTGGACAGATCTGGCAGCCAGCAGCTGGATG < 41bp 0.803577607245208 0.582360753001339 0.8963331 0.4092268 prediction 0.442433708487739 Functional Loss - CERS4 ENSG00000090661 UTR3 Human protein_coding chr19:8327192 chr19:8327196 . . 0 25 hm5C_associated_SNPs_81063 0 0 1 1 8327179 8327203 mRNA hsa-miR-149 LASS4 miRanda miRanda
6529 chr2 98744740 98744740 1 + T C rs143077276 98744739 + 98744719 98744759 41 CTTTGTGGTGGGGGATGTTCCTGAAGAATCCAAGGAGCTTC CTTTGTGGTGGGGGATGTTCCCGAAGAATCCAAGGAGCTTC < 41bp 0.750562802756257 0.529365607146526 0.33263808 0.8065969 prediction 0.442394391219462 Functional Loss - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98744739 chr2:98744740 synonymous SNV . 0 22 hm5C_associated_SNPs_81075 0 0 0 1 98744722 98744742 mRNA hsa-miR-873 VWA3B miRanda miRanda
6530 chr22 42276872 42276872 1 + C T SKCM 42276870 + 42276850 42276890 41 TACGCCTGGTGCGCTGGCTGCTCAAGAAAGTCTTCCAGTGC TACGCCTGGTGCGCTGGCTGCTTAAGAAAGTCTTCCAGTGC < 41bp 0.721151100862083 0.432933920099615 0.09384942 0.0801982 prediction 0.442302201724166 Functional Loss - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42276870 chr22:42276872 stopgain 0.997 0 23 hm5C_associated_SNPs_81104 0 0 1 1 42276864 42276886 mRNA hsa-miR-7 SREBF2 miRanda miRanda
6531 chr8 39843034 39843034 1 + G A SKCM 39843031 + 39843011 39843051 41 ACTGAAATTGGGCTAGATTCCTGGAAATTGGGTAAGTTCTC ACTGAAATTGGGCTAGATTCCTGAAAATTGGGTAAGTTCTC < 41bp 0.723415911903963 0.502294165286405 0.28881449 0.16848564 prediction 0.442243493235116 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39843031 chr8:39843034 nonsynonymous SNV 0.961 0 24 hm5C_associated_SNPs_81121 0 0 0 2 39843032 39843052 mRNA hsa-miR-146a IDO2 miRanda miRanda
6532 chr8 39843034 39843034 1 + G A SKCM 39843031 + 39843011 39843051 41 ACTGAAATTGGGCTAGATTCCTGGAAATTGGGTAAGTTCTC ACTGAAATTGGGCTAGATTCCTGAAAATTGGGTAAGTTCTC < 41bp 0.723415911903963 0.502294165286405 0.28881449 0.16848564 prediction 0.442243493235116 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39843031 chr8:39843034 nonsynonymous SNV 0.961 0 24 hm5C_associated_SNPs_81121 0 0 0 2 39843032 39843052 mRNA hsa-miR-146b-5p IDO2 miRanda miRanda
6533 chr3 179069792 179069792 1 + C T GBM 179069790 + 179069770 179069810 41 CATCATTGGTGAGGTGCTATCTCGGAGACACATGAAGGTGG CATCATTGGTGAGGTGCTATCTTGGAGACACATGAAGGTGG < 41bp 0.84859393089865 0.627522652744438 0.7449462 0.7808332 prediction 0.442142556308424 Functional Loss - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179069790 chr3:179069792 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_81153 0 0 1 1 179069785 179069808 mRNA hsa-miR-205 MFN1 miRanda miRanda
6534 chr1 110775743 110775743 1 + C T rs572967682 110775741 + 110775721 110775761 41 GGAAAATCTCCCATGCGACCCTCGGGGCCCAGAGCCATCTG GGAAAATCTCCCATGCGACCCTTGGGGCCCAGAGCCATCTG < 41bp 0.759781736239781 0.538742767481413 0.16120109 0.014721781 prediction 0.442077937516736 Functional Loss - KCNC4 ENSG00000116396 UTR3 Human protein_coding chr1:110775741 chr1:110775743 . . 0 23 hm5C_associated_SNPs_81168 0 0 1 2 110775731 110775755 mRNA hsa-miR-330-5p KCNC4 miRanda miRanda
6535 chr1 110775743 110775743 1 + C T rs572967682 110775741 + 110775721 110775761 41 GGAAAATCTCCCATGCGACCCTCGGGGCCCAGAGCCATCTG GGAAAATCTCCCATGCGACCCTTGGGGCCCAGAGCCATCTG < 41bp 0.759781736239781 0.538742767481413 0.16120109 0.014721781 prediction 0.442077937516736 Functional Loss - KCNC4 ENSG00000116396 UTR3 Human protein_coding chr1:110775741 chr1:110775743 . . 0 23 hm5C_associated_SNPs_81168 0 0 1 2 110775736 110775755 mRNA hsa-miR-326 KCNC4 miRanda miRanda
6536 chr3 72223257 72223257 1 + G A rs190069739 72223254 + 72223234 72223274 41 GTCAGGCCACAATACCTCCCCTGGGAGGACGTCTGTGCCTG GTCAGGCCACAATACCTCCCCTGAGAGGACGTCTGTGCCTG < 41bp 0.759561488468804 0.538629195270644 0.33251116 0.058638632 prediction 0.441864586396319 Functional Loss - LINC00870 ENSG00000243083 ncRNA_exonic Human lincRNA chr3:72223254 chr3:72223257 . . 0 24 hm5C_associated_SNPs_81237 0 0 0 1 72223257 72223280 mRNA hsa-miR-300 LOC201617 miRanda miRanda
6537 chr1 236341796 236341796 1 + G T LUAD 236341794 + 236341774 236341814 41 CTGTGCTGTGCTGGTAAAGACGGGAAATTGGGAGAGGAAGG CTGTGCTGTGCTGGTAAAGACGTGAAATTGGGAGAGGAAGG < 41bp 0.904072970759643 0.683159812000369 0.82676697 0.37131548 prediction 0.441826317518549 Functional Loss - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236341794 chr1:236341796 stopgain 0.383 0 23 hm5C_associated_SNPs_81253 0 0 1 1 236341782 236341808 mRNA hsa-miR-150 GPR137B miRanda miRanda
6538 chr13 111870157 111870157 1 + G A UCEC 111870154 + 111870134 111870174 41 ACCCGTGTGGAAGAGGGAGGCTGGTGGGAGGGCACACTCAA ACCCGTGTGGAAGAGGGAGGCTGATGGGAGGGCACACTCAA < 41bp 0.720911697786325 0.493582336775408 0.86701655 0.7791216 prediction 0.44182339557265 Functional Loss - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111870154 chr13:111870157 stopgain 1.000 1 24 hm5C_associated_SNPs_81255 0 0 1 1 111870146 111870170 mRNA hsa-miR-328 ARHGEF7 miRanda miRanda
6539 chr14 75190037 75190037 1 + G T SARC 75190034 + 75190014 75190054 41 AGAAATTGGGGCAGAAGTATCGAGTGGCTCTAAGGTAGGAA AGAAATTGGGGCAGAAGTATCGATTGGCTCTAAGGTAGGAA < 41bp 0.720882164043151 0.331254553409443 0.8110185 0.13668916 prediction 0.441764328086301 Functional Loss - FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190034 chr14:75190037 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_81274 0 0 1 1 75190034 75190047 mRNA hsa-miR-182 FCF1 miRanda miRanda
6540 chr9 72435846 72435846 1 + C T UCEC 72435844 + 72435824 72435864 41 ACTGGTGCGACAGGAAGCAACACTGGTTGGAGATCGGACCA ACTGGTGCGACAGGAAGCAACATTGGTTGGAGATCGGACCA < 41bp 0.735808254706179 0.514968471261187 0.3298701 0.3546209 prediction 0.441679566889985 Functional Loss - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72435844 chr9:72435846 synonymous SNV . 0 23 hm5C_associated_SNPs_81308 0 0 0 2 72435831 72435850 mRNA hsa-miR-199a-5p C9orf135 miRanda miRanda
6541 chr9 72435846 72435846 1 + C T UCEC 72435844 + 72435824 72435864 41 ACTGGTGCGACAGGAAGCAACACTGGTTGGAGATCGGACCA ACTGGTGCGACAGGAAGCAACATTGGTTGGAGATCGGACCA < 41bp 0.735808254706179 0.514968471261187 0.3298701 0.3546209 prediction 0.441679566889985 Functional Loss - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72435844 chr9:72435846 synonymous SNV . 0 23 hm5C_associated_SNPs_81308 0 0 0 2 72435831 72435850 mRNA hsa-miR-199b-5p C9orf135 miRanda miRanda
6542 chr3 10284828 10284828 1 + C T rs181422595 10284826 + 10284806 10284846 41 CCTCTCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAG CCTCTCAGGTTCAAGTGATTCTTCTGCCTCAGCCTCCTGAG < 41bp 0.74249379139093 0.52173046263003 0.1134893 0.077010155 prediction 0.441526657521799 Functional Loss - IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284826 chr3:10284828 . . 0 23 hm5C_associated_SNPs_81362 0 0 0 1 10284821 10284842 mRNA hsa-miR-485-5p IRAK2 miRanda miRanda
6543 chr10 99512859 99512859 1 + T C COAD 99512858 + 99512838 99512878 41 CCCTGCAGGACAACGGGTTCCTGAGCAAGAATGAGGTGCTG CCCTGCAGGACAACGGGTTCCCGAGCAAGAATGAGGTGCTG < 41bp 0.763802615152339 0.54308672091503 0.3466127 0.39834338 prediction 0.441431788474619 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99512858 chr10:99512859 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_81401 0 0 1 1 99512842 99512861 mRNA hsa-miR-873 ZFYVE27 miRanda miRanda
6544 chr3 122610305 122610305 1 + A C rs1560485 122610304 + 122610284 122610324 41 CCAGCAGGCTGCGGTAGACTCACTGCCAGAGTGGGTCAGGA CCAGCAGGCTGCGGTAGACTCCCTGCCAGAGTGGGTCAGGA < 41bp 0.720664121411773 0.495906597246536 0.12205851 0.1096552 prediction 0.441328242823546 Functional Loss - LINC02035 ENSG00000273033 ncRNA_exonic Human lincRNA chr3:122610304 chr3:122610305 . . 0 22 hm5C_associated_SNPs_81434 0 0 0 9 122610300 122610321 lncRNA hsa-miR-1180-5p LINC02035 miRanda starBase2
6545 chr3 122610305 122610305 1 + A C rs1560485 122610304 + 122610284 122610324 41 CCAGCAGGCTGCGGTAGACTCACTGCCAGAGTGGGTCAGGA CCAGCAGGCTGCGGTAGACTCCCTGCCAGAGTGGGTCAGGA < 41bp 0.720664121411773 0.495906597246536 0.12205851 0.1096552 prediction 0.441328242823546 Functional Loss - LINC02035 ENSG00000273033 ncRNA_exonic Human lincRNA chr3:122610304 chr3:122610305 . . 0 22 hm5C_associated_SNPs_81434 0 0 0 9 122610301 122610321 lncRNA hsa-miR-7114-3p LINC02035 miRanda starBase2
6546 chr3 122610305 122610305 1 + A C rs1560485 122610304 + 122610284 122610324 41 CCAGCAGGCTGCGGTAGACTCACTGCCAGAGTGGGTCAGGA CCAGCAGGCTGCGGTAGACTCCCTGCCAGAGTGGGTCAGGA < 41bp 0.720664121411773 0.495906597246536 0.12205851 0.1096552 prediction 0.441328242823546 Functional Loss - LINC02035 ENSG00000273033 ncRNA_exonic Human lincRNA chr3:122610304 chr3:122610305 . . 0 22 hm5C_associated_SNPs_81434 0 0 0 9 122610288 122610308 lncRNA hsa-miR-3174 LINC02035 miRanda starBase2
6547 chr3 122610305 122610305 1 + A C rs1560485 122610304 + 122610284 122610324 41 CCAGCAGGCTGCGGTAGACTCACTGCCAGAGTGGGTCAGGA CCAGCAGGCTGCGGTAGACTCCCTGCCAGAGTGGGTCAGGA < 41bp 0.720664121411773 0.495906597246536 0.12205851 0.1096552 prediction 0.441328242823546 Functional Loss - LINC02035 ENSG00000273033 ncRNA_exonic Human lincRNA chr3:122610304 chr3:122610305 . . 0 22 hm5C_associated_SNPs_81434 0 0 0 9 122610290 122610311 lncRNA hsa-miR-34a-5p LINC02035 miRanda starBase2
6548 chr3 122610305 122610305 1 + A C rs1560485 122610304 + 122610284 122610324 41 CCAGCAGGCTGCGGTAGACTCACTGCCAGAGTGGGTCAGGA CCAGCAGGCTGCGGTAGACTCCCTGCCAGAGTGGGTCAGGA < 41bp 0.720664121411773 0.495906597246536 0.12205851 0.1096552 prediction 0.441328242823546 Functional Loss - LINC02035 ENSG00000273033 ncRNA_exonic Human lincRNA chr3:122610304 chr3:122610305 . . 0 22 hm5C_associated_SNPs_81434 0 0 0 9 122610290 122610311 lncRNA hsa-miR-34c-5p LINC02035 miRanda starBase2
6549 chr3 122610305 122610305 1 + A C rs1560485 122610304 + 122610284 122610324 41 CCAGCAGGCTGCGGTAGACTCACTGCCAGAGTGGGTCAGGA CCAGCAGGCTGCGGTAGACTCCCTGCCAGAGTGGGTCAGGA < 41bp 0.720664121411773 0.495906597246536 0.12205851 0.1096552 prediction 0.441328242823546 Functional Loss - LINC02035 ENSG00000273033 ncRNA_exonic Human lincRNA chr3:122610304 chr3:122610305 . . 0 22 hm5C_associated_SNPs_81434 0 0 0 9 122610290 122610311 lncRNA hsa-miR-449a LINC02035 miRanda starBase2
6550 chr3 122610305 122610305 1 + A C rs1560485 122610304 + 122610284 122610324 41 CCAGCAGGCTGCGGTAGACTCACTGCCAGAGTGGGTCAGGA CCAGCAGGCTGCGGTAGACTCCCTGCCAGAGTGGGTCAGGA < 41bp 0.720664121411773 0.495906597246536 0.12205851 0.1096552 prediction 0.441328242823546 Functional Loss - LINC02035 ENSG00000273033 ncRNA_exonic Human lincRNA chr3:122610304 chr3:122610305 . . 0 22 hm5C_associated_SNPs_81434 0 0 0 9 122610290 122610311 lncRNA hsa-miR-449b-5p LINC02035 miRanda starBase2
6551 chr3 122610305 122610305 1 + A C rs1560485 122610304 + 122610284 122610324 41 CCAGCAGGCTGCGGTAGACTCACTGCCAGAGTGGGTCAGGA CCAGCAGGCTGCGGTAGACTCCCTGCCAGAGTGGGTCAGGA < 41bp 0.720664121411773 0.495906597246536 0.12205851 0.1096552 prediction 0.441328242823546 Functional Loss - LINC02035 ENSG00000273033 ncRNA_exonic Human lincRNA chr3:122610304 chr3:122610305 . . 0 22 hm5C_associated_SNPs_81434 0 0 0 9 122610293 122610316 lncRNA hsa-miR-514a-5p LINC02035 miRanda starBase2
6552 chr3 122610305 122610305 1 + A C rs1560485 122610304 + 122610284 122610324 41 CCAGCAGGCTGCGGTAGACTCACTGCCAGAGTGGGTCAGGA CCAGCAGGCTGCGGTAGACTCCCTGCCAGAGTGGGTCAGGA < 41bp 0.720664121411773 0.495906597246536 0.12205851 0.1096552 prediction 0.441328242823546 Functional Loss - LINC02035 ENSG00000273033 ncRNA_exonic Human lincRNA chr3:122610304 chr3:122610305 . . 0 22 hm5C_associated_SNPs_81434 0 0 0 9 122610285 122610306 lncRNA hsa-miR-627-5p LINC02035 miRanda starBase2
6553 chr21 43838679 43838679 1 + C T BLCA 43838677 + 43838657 43838697 41 GGCTTCCTGCCGGAAAACTACACGGATCGAGCCAGTGAGTC GGCTTCCTGCCGGAAAACTACATGGATCGAGCCAGTGAGTC < 41bp 0.82732924059716 0.606666422860874 0.24997386 0.1743061 prediction 0.441325635472572 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43838677 chr21:43838679 nonsynonymous SNV 0.629 3 23 hm5C_associated_SNPs_81437 0 0 0 1 43838670 43838692 mRNA hsa-miR-149 UBASH3A miRanda miRanda
6554 chr22 39429184 39429184 1 + A C rs533158334 39429183 + 39429163 39429203 41 AGTAAACTGAGATCGCGCCACAGAACTCCAGTTTGAGCAAC AGTAAACTGAGATCGCGCCACCGAACTCCAGTTTGAGCAAC < 41bp 0.760211695762812 0.539559095888866 0.2612399 0.20495367 prediction 0.441305199747891 Functional Loss - APOBEC3D ENSG00000243811 UTR3 Human protein_coding chr22:39429183 chr22:39429184 . . 0 22 hm5C_associated_SNPs_81450 0 0 0 1 39429181 39429200 mRNA hsa-miR-371-5p APOBEC3D miRanda miRanda
6555 chr5 16180435 16180435 1 + G A rs181390963 16180432 + 16180412 16180452 41 CTCCCCGCGCTTGGAGCCCTCAAGGGCACTCTCAGGGATCC CTCCCCGCGCTTGGAGCCCTCAAAGGCACTCTCAGGGATCC < 41bp 0.720620477854199 0.490359004542029 0.82846045 0.48886096 prediction 0.441240955708398 Functional Loss - MARCH11 ENSG00000250448 ncRNA_exonic Human antisense chr5:16180432 chr5:16180435 . . 0 24 hm5C_associated_SNPs_81470 0 0 0 2 16180425 16180449 mRNA hsa-miR-125b LOC401176 miRanda miRanda
6556 chr5 16180435 16180435 1 + G A rs181390963 16180432 + 16180412 16180452 41 CTCCCCGCGCTTGGAGCCCTCAAGGGCACTCTCAGGGATCC CTCCCCGCGCTTGGAGCCCTCAAAGGCACTCTCAGGGATCC < 41bp 0.720620477854199 0.490359004542029 0.82846045 0.48886096 prediction 0.441240955708398 Functional Loss - MARCH11 ENSG00000250448 ncRNA_exonic Human antisense chr5:16180432 chr5:16180435 . . 0 24 hm5C_associated_SNPs_81470 0 0 0 2 16180423 16180449 mRNA hsa-miR-125a-5p LOC401176 miRanda miRanda
6557 chr9 74817603 74817603 1 + C T STAD 74817600 + 74817580 74817620 41 GCTGACCAAGTACACATTTCCTGCAGAACACAGATTCCAGA GCTGACCAAGTACACATTTCCTGTAGAACACAGATTCCAGA < 41bp 0.75162243517201 0.531053483818526 0.31604367 0.32770175 prediction 0.441137902706968 Functional Loss - GDA ENSG00000119125 CDS Human protein_coding chr9:74817600 chr9:74817603 nonsynonymous SNV 0.215 0 24 hm5C_associated_SNPs_81512 0 0 1 1 74817587 74817608 mRNA hsa-miR-544 GDA miRanda miRanda
6558 chr6 44198148 44198148 1 + G A LUSC 44198145 + 44198125 44198165 41 GGCCTTCTGCCTGCCAGCTACACGGCCCCCATCATGAGTGG GGCCTTCTGCCTGCCAGCTACACAGCCCCCATCATGAGTGG < 41bp 0.790067649875633 0.569502159386409 0.49962533 0.32944834 prediction 0.441130980978448 Functional Loss - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44198145 chr6:44198148 synonymous SNV . 0 24 hm5C_associated_SNPs_81515 0 0 1 1 44198141 44198162 mRNA hsa-miR-433 SLC29A1 miRanda miRanda
6559 chr10 88759254 88759254 1 + G T UCEC 88759251 + 88759231 88759271 41 GAATGGTGCATGGAGAATATCAAGACCAAGAAATCCACAAT GAATGGTGCATGGAGAATATCAATACCAAGAAATCCACAAT < 41bp 0.720544471721036 0.360439182612588 0.9052713 0.3736264 prediction 0.441088943442072 Functional Loss - AGAP11 ENSG00000151303;ENSG00000240089;ENSG00000271880;ENSG00000272508 ncRNA_exonic Human other chr10:88759251 chr10:88759254 . . 0 24 hm5C_associated_SNPs_81531 0 0 0 1 88759246 88759267 mRNA hsa-miR-876-5p AGAP11 miRanda miRanda
6560 chr12 110924408 110924408 1 + C T PRAD 110924405 + 110924385 110924425 41 GAAACAGCATTACCCTTGCACTACATGGCGACATCAACTGG GAAACAGCATTACCCTTGCACTATATGGCGACATCAACTGG < 41bp 0.732318165685323 0.511785779950553 0.48744705 0.2788033 prediction 0.441064771469541 Functional Loss - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110924405 chr12:110924408 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_81539 0 0 1 1 110924401 110924427 mRNA hsa-miR-145 C12orf24 miRanda miRanda
6561 chr3 56627978 56627978 1 + C T SKCM 56627976 + 56627956 56627996 41 GTATGTATCTTGCCAGCTTTCTCCGTTCTATGACTGCTCTC GTATGTATCTTGCCAGCTTTCTTCGTTCTATGACTGCTCTC < 41bp 0.720531581639518 0.431830270233769 0.34931746 0.20877936 prediction 0.441063163279036 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56627976 chr3:56627978 synonymous SNV . 0 23 hm5C_associated_SNPs_81541 0 0 1 6 56627972 56627994 mRNA hsa-miR-15a CCDC66 miRanda miRanda
6562 chr3 56627978 56627978 1 + C T SKCM 56627976 + 56627956 56627996 41 GTATGTATCTTGCCAGCTTTCTCCGTTCTATGACTGCTCTC GTATGTATCTTGCCAGCTTTCTTCGTTCTATGACTGCTCTC < 41bp 0.720531581639518 0.431830270233769 0.34931746 0.20877936 prediction 0.441063163279036 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56627976 chr3:56627978 synonymous SNV . 0 23 hm5C_associated_SNPs_81541 0 0 1 6 56627972 56627993 mRNA hsa-miR-103 CCDC66 miRanda miRanda
6563 chr3 56627978 56627978 1 + C T SKCM 56627976 + 56627956 56627996 41 GTATGTATCTTGCCAGCTTTCTCCGTTCTATGACTGCTCTC GTATGTATCTTGCCAGCTTTCTTCGTTCTATGACTGCTCTC < 41bp 0.720531581639518 0.431830270233769 0.34931746 0.20877936 prediction 0.441063163279036 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56627976 chr3:56627978 synonymous SNV . 0 23 hm5C_associated_SNPs_81541 0 0 1 6 56627972 56627993 mRNA hsa-miR-107 CCDC66 miRanda miRanda
6564 chr3 56627978 56627978 1 + C T SKCM 56627976 + 56627956 56627996 41 GTATGTATCTTGCCAGCTTTCTCCGTTCTATGACTGCTCTC GTATGTATCTTGCCAGCTTTCTTCGTTCTATGACTGCTCTC < 41bp 0.720531581639518 0.431830270233769 0.34931746 0.20877936 prediction 0.441063163279036 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56627976 chr3:56627978 synonymous SNV . 0 23 hm5C_associated_SNPs_81541 0 0 1 6 56627973 56627994 mRNA hsa-miR-195 CCDC66 miRanda miRanda
6565 chr3 56627978 56627978 1 + C T SKCM 56627976 + 56627956 56627996 41 GTATGTATCTTGCCAGCTTTCTCCGTTCTATGACTGCTCTC GTATGTATCTTGCCAGCTTTCTTCGTTCTATGACTGCTCTC < 41bp 0.720531581639518 0.431830270233769 0.34931746 0.20877936 prediction 0.441063163279036 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56627976 chr3:56627978 synonymous SNV . 0 23 hm5C_associated_SNPs_81541 0 0 1 6 56627972 56627989 mRNA hsa-miR-376a CCDC66 miRanda miRanda
6566 chr3 56627978 56627978 1 + C T SKCM 56627976 + 56627956 56627996 41 GTATGTATCTTGCCAGCTTTCTCCGTTCTATGACTGCTCTC GTATGTATCTTGCCAGCTTTCTTCGTTCTATGACTGCTCTC < 41bp 0.720531581639518 0.431830270233769 0.34931746 0.20877936 prediction 0.441063163279036 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56627976 chr3:56627978 synonymous SNV . 0 23 hm5C_associated_SNPs_81541 0 0 1 6 56627972 56627989 mRNA hsa-miR-376b CCDC66 miRanda miRanda
6567 chr10 70496795 70496795 1 + C T STAD 70496792 + 70496772 70496812 41 ACAAGCCGCAGCTGCAGCAGCTGCATTACAACAGGTAAATC ACAAGCCGCAGCTGCAGCAGCTGTATTACAACAGGTAAATC < 41bp 0.720495910500595 0.494218301045438 0.13210022 0.08613324 prediction 0.440991821001191 Functional Loss - CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70496792 chr10:70496795 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_81563 0 0 1 1 70496788 70496805 mRNA hsa-miR-137 CCAR1 miRanda miRanda
6568 chr14 75359661 75359661 1 + G A UCEC 75359658 + 75359638 75359678 41 ACTCAGATGCCACCGGTGCCCTCGCCCTCACAGCCTCCTTC ACTCAGATGCCACCGGTGCCCTCACCCTCACAGCCTCCTTC < 41bp 0.792992069727286 0.572526545111271 0.05626437 0.050421 prediction 0.44093104923203 Functional Loss - DLST ENSG00000119689 CDS Human protein_coding chr14:75359658 chr14:75359661 synonymous SNV . 0 24 hm5C_associated_SNPs_81585 0 0 1 1 75359654 75359675 mRNA hsa-miR-485-5p DLST miRanda miRanda
6569 chr12 111085646 111085646 1 + A C BRCA 111085642 + 111085622 111085662 41 TGCAGAGGCAGGCTTCAGAGCTCCACCAGCCATCAATGCCA TGCAGAGGCAGGCTTCAGAGCTCCCCCAGCCATCAATGCCA < 41bp 0.720442322625815 0.302245492774694 0.754506 0.08043283 prediction 0.440884645251631 Functional Loss - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111085642 chr12:111085646 nonsynonymous SNV 0.117 0 25 hm5C_associated_SNPs_81601 0 0 1 1 111085627 111085652 mRNA hsa-miR-138 TCTN1 miRanda miRanda
6570 chr9 1056739 1056739 1 + G A SKCM 1056736 + 1056716 1056756 41 GACTTGAAGGGAGCACGAGTCCAGGATGGACTCAGTGCAGA GACTTGAAGGGAGCACGAGTCCAAGATGGACTCAGTGCAGA < 41bp 0.75656020226859 0.53613346939352 0.34972483 0.16523597 prediction 0.44085346575014 Functional Loss - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056736 chr9:1056739 synonymous SNV . 0 24 hm5C_associated_SNPs_81612 0 0 0 3 1056719 1056740 mRNA hsa-miR-149 DMRT2 miRanda miRanda
6571 chr9 1056739 1056739 1 + G A SKCM 1056736 + 1056716 1056756 41 GACTTGAAGGGAGCACGAGTCCAGGATGGACTCAGTGCAGA GACTTGAAGGGAGCACGAGTCCAAGATGGACTCAGTGCAGA < 41bp 0.75656020226859 0.53613346939352 0.34972483 0.16523597 prediction 0.44085346575014 Functional Loss - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056736 chr9:1056739 synonymous SNV . 0 24 hm5C_associated_SNPs_81612 0 0 0 3 1056720 1056740 mRNA hsa-miR-378 DMRT2 miRanda miRanda
6572 chr9 1056739 1056739 1 + G A SKCM 1056736 + 1056716 1056756 41 GACTTGAAGGGAGCACGAGTCCAGGATGGACTCAGTGCAGA GACTTGAAGGGAGCACGAGTCCAAGATGGACTCAGTGCAGA < 41bp 0.75656020226859 0.53613346939352 0.34972483 0.16523597 prediction 0.44085346575014 Functional Loss - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056736 chr9:1056739 synonymous SNV . 0 24 hm5C_associated_SNPs_81612 0 0 0 3 1056719 1056740 mRNA hsa-miR-422a DMRT2 miRanda miRanda
6573 chr18 12325224 12325224 1 + G T LUAD 12325222 + 12325202 12325242 41 GCTGGGCGGCGGCACGGGCTCAGGCATGGGCACGCTGCTCA GCTGGGCGGCGGCACGGGCTCATGCATGGGCACGCTGCTCA < 41bp 0.906519195603762 0.686095304043115 0.79070866 0.2474331 prediction 0.440847783121294 Functional Loss - TUBB6 ENSG00000176014 CDS Human protein_coding chr18:12325222 chr18:12325224 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_81616 0 0 1 1 12325219 12325241 mRNA hsa-miR-503 TUBB6 miRanda miRanda
6574 chr4 3318625 3318625 1 + C T STAD 3318623 + 3318603 3318643 41 GGCTCCATTGAGCTTCCTTCCACGAGCTCCAACCTGGAGTC GGCTCCATTGAGCTTCCTTCCATGAGCTCCAACCTGGAGTC < 41bp 0.815337060833795 0.594968107254168 0.39305562 0.36117202 prediction 0.440737907159254 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3318623 chr4:3318625 nonsynonymous SNV 0.391 4 23 hm5C_associated_SNPs_81651 0 0 1 1 3318622 3318646 mRNA hsa-miR-127-3p RGS12 miRanda miRanda
6575 chr17 59445833 59445833 1 + G T LUAD 59445831 + 59445811 59445851 41 CCATGGCCGAGTCACCTAGCCGGGACGTCGTGGGATCCGGA CCATGGCCGAGTCACCTAGCCGTGACGTCGTGGGATCCGGA < 41bp 0.720263170916015 0.409800316192588 0.8561018 0.13146886 prediction 0.44052634183203 Functional Loss - BCAS3 ENSG00000141376 CDS Human protein_coding chr17:59445831 chr17:59445833 synonymous SNV . 0 23 hm5C_associated_SNPs_81734 0 0 0 1 59445828 59445850 mRNA hsa-miR-127-3p BCAS3 miRanda miRanda
6576 chr19 8503612 8503612 1 + G A rs140893509 8503609 + 8503589 8503629 41 ATCCTGTGTGAAGATATTTTCAGGGTTTTTTTTTTTTTTTT ATCCTGTGTGAAGATATTTTCAGAGTTTTTTTTTTTTTTTT < 41bp 0.734882823180372 0.514638617916562 0.9171902 0.89965916 prediction 0.440488410527619 Functional Loss - MARCH2 ENSG00000099785 UTR3 Human protein_coding chr19:8503609 chr19:8503612 . . 0 24 hm5C_associated_SNPs_81752 0 0 1 5 8503593 8503615 mRNA hsa-miR-10a MARCH2 miRanda miRanda
6577 chr19 8503612 8503612 1 + G A rs140893509 8503609 + 8503589 8503629 41 ATCCTGTGTGAAGATATTTTCAGGGTTTTTTTTTTTTTTTT ATCCTGTGTGAAGATATTTTCAGAGTTTTTTTTTTTTTTTT < 41bp 0.734882823180372 0.514638617916562 0.9171902 0.89965916 prediction 0.440488410527619 Functional Loss - MARCH2 ENSG00000099785 UTR3 Human protein_coding chr19:8503609 chr19:8503612 . . 0 24 hm5C_associated_SNPs_81752 0 0 1 5 8503593 8503615 mRNA hsa-miR-10b MARCH2 miRanda miRanda
6578 chr19 8503612 8503612 1 + G A rs140893509 8503609 + 8503589 8503629 41 ATCCTGTGTGAAGATATTTTCAGGGTTTTTTTTTTTTTTTT ATCCTGTGTGAAGATATTTTCAGAGTTTTTTTTTTTTTTTT < 41bp 0.734882823180372 0.514638617916562 0.9171902 0.89965916 prediction 0.440488410527619 Functional Loss - MARCH2 ENSG00000099785 UTR3 Human protein_coding chr19:8503609 chr19:8503612 . . 0 24 hm5C_associated_SNPs_81752 0 0 1 5 8503595 8503614 mRNA hsa-miR-125b MARCH2 miRanda miRanda
6579 chr19 8503612 8503612 1 + G A rs140893509 8503609 + 8503589 8503629 41 ATCCTGTGTGAAGATATTTTCAGGGTTTTTTTTTTTTTTTT ATCCTGTGTGAAGATATTTTCAGAGTTTTTTTTTTTTTTTT < 41bp 0.734882823180372 0.514638617916562 0.9171902 0.89965916 prediction 0.440488410527619 Functional Loss - MARCH2 ENSG00000099785 UTR3 Human protein_coding chr19:8503609 chr19:8503612 . . 0 24 hm5C_associated_SNPs_81752 0 0 1 5 8503590 8503614 mRNA hsa-miR-125a-5p MARCH2 miRanda miRanda
6580 chr19 8503612 8503612 1 + G A rs140893509 8503609 + 8503589 8503629 41 ATCCTGTGTGAAGATATTTTCAGGGTTTTTTTTTTTTTTTT ATCCTGTGTGAAGATATTTTCAGAGTTTTTTTTTTTTTTTT < 41bp 0.734882823180372 0.514638617916562 0.9171902 0.89965916 prediction 0.440488410527619 Functional Loss - MARCH2 ENSG00000099785 UTR3 Human protein_coding chr19:8503609 chr19:8503612 . . 0 24 hm5C_associated_SNPs_81752 0 0 1 5 8503590 8503616 mRNA hsa-miR-504 MARCH2 miRanda miRanda
6581 chr21 43838704 43838704 1 + G T LUAD 43838701 + 43838681 43838721 41 GATCGAGCCAGTGAGTCTGACACGTGGGTGAAGCACAGGTG GATCGAGCCAGTGAGTCTGACACTTGGGTGAAGCACAGGTG < 41bp 0.720181637369902 0.323536385782928 0.35059628 0.27904865 prediction 0.440363274739804 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43838701 chr21:43838704 synonymous SNV . 0 24 hm5C_associated_SNPs_81800 0 0 0 3 43838686 43838708 mRNA hsa-miR-199a-5p UBASH3A miRanda miRanda
6582 chr21 43838704 43838704 1 + G T LUAD 43838701 + 43838681 43838721 41 GATCGAGCCAGTGAGTCTGACACGTGGGTGAAGCACAGGTG GATCGAGCCAGTGAGTCTGACACTTGGGTGAAGCACAGGTG < 41bp 0.720181637369902 0.323536385782928 0.35059628 0.27904865 prediction 0.440363274739804 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43838701 chr21:43838704 synonymous SNV . 0 24 hm5C_associated_SNPs_81800 0 0 0 3 43838686 43838708 mRNA hsa-miR-199b-5p UBASH3A miRanda miRanda
6583 chr21 43838704 43838704 1 + G T LUAD 43838701 + 43838681 43838721 41 GATCGAGCCAGTGAGTCTGACACGTGGGTGAAGCACAGGTG GATCGAGCCAGTGAGTCTGACACTTGGGTGAAGCACAGGTG < 41bp 0.720181637369902 0.323536385782928 0.35059628 0.27904865 prediction 0.440363274739804 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43838701 chr21:43838704 synonymous SNV . 0 24 hm5C_associated_SNPs_81800 0 0 0 3 43838698 43838718 mRNA hsa-miR-218 UBASH3A miRanda miRanda
6584 chr21 43838703 43838703 1 + C T STAD 43838701 + 43838681 43838721 41 GATCGAGCCAGTGAGTCTGACACGTGGGTGAAGCACAGGTG GATCGAGCCAGTGAGTCTGACATGTGGGTGAAGCACAGGTG < 41bp 0.720181637369902 0.463923402098415 0.35059628 0.45746678 prediction 0.440363274739804 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43838701 chr21:43838703 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_81801 0 0 0 3 43838686 43838708 mRNA hsa-miR-199a-5p UBASH3A miRanda miRanda
6585 chr21 43838703 43838703 1 + C T STAD 43838701 + 43838681 43838721 41 GATCGAGCCAGTGAGTCTGACACGTGGGTGAAGCACAGGTG GATCGAGCCAGTGAGTCTGACATGTGGGTGAAGCACAGGTG < 41bp 0.720181637369902 0.463923402098415 0.35059628 0.45746678 prediction 0.440363274739804 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43838701 chr21:43838703 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_81801 0 0 0 3 43838686 43838708 mRNA hsa-miR-199b-5p UBASH3A miRanda miRanda
6586 chr21 43838703 43838703 1 + C T STAD 43838701 + 43838681 43838721 41 GATCGAGCCAGTGAGTCTGACACGTGGGTGAAGCACAGGTG GATCGAGCCAGTGAGTCTGACATGTGGGTGAAGCACAGGTG < 41bp 0.720181637369902 0.463923402098415 0.35059628 0.45746678 prediction 0.440363274739804 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43838701 chr21:43838703 nonsynonymous SNV 0.983 4 23 hm5C_associated_SNPs_81801 0 0 0 3 43838698 43838718 mRNA hsa-miR-218 UBASH3A miRanda miRanda
6587 chr12 111085646 111085646 1 + A C BRCA 111085645 + 111085625 111085665 41 AGAGGCAGGCTTCAGAGCTCCACCAGCCATCAATGCCAGGC AGAGGCAGGCTTCAGAGCTCCCCCAGCCATCAATGCCAGGC < 41bp 0.764585454939901 0.544413953276284 0.30222422 0.1336354 prediction 0.440343003327234 Functional Loss - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111085645 chr12:111085646 nonsynonymous SNV 0.117 0 22 hm5C_associated_SNPs_81805 0 0 1 1 111085627 111085652 mRNA hsa-miR-138 TCTN1 miRanda miRanda
6588 chr16 21847804 21847804 1 + G A CESC 21847801 + 21847781 21847821 41 GGAAGGGGAGTGAGCTGACGCTCGGAAGGTGTCTTGAGATT GGAAGGGGAGTGAGCTGACGCTCAGAAGGTGTCTTGAGATT < 41bp 0.759546574747502 0.539442114536705 0.1034677 0.1639694 prediction 0.440208920421594 Functional Loss - NPIPB4 ENSG00000185864 CDS Human protein_coding chr16:21847801 chr16:21847804 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_81860 0 0 0 1 21847803 21847822 mRNA hsa-miR-216a LOC100132247 miRanda miRanda
6589 chr12 113354475 113354475 1 + G A UCEC 113354472 + 113354452 113354492 41 TACCAGCAACTCTGCATCTACTGGACAAAGTATTATGACTT TACCAGCAACTCTGCATCTACTGAACAAAGTATTATGACTT < 41bp 0.720050488270519 0.492336778254719 0.16485438 0.12306395 prediction 0.440100976541038 Functional Loss - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113354472 chr12:113354475 stopgain 0.895 0 24 hm5C_associated_SNPs_81896 0 0 0 7 113354473 113354493 mRNA hsa-miR-224 OAS1 miRanda miRanda
6590 chr12 113354475 113354475 1 + G A UCEC 113354472 + 113354452 113354492 41 TACCAGCAACTCTGCATCTACTGGACAAAGTATTATGACTT TACCAGCAACTCTGCATCTACTGAACAAAGTATTATGACTT < 41bp 0.720050488270519 0.492336778254719 0.16485438 0.12306395 prediction 0.440100976541038 Functional Loss - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113354472 chr12:113354475 stopgain 0.895 0 24 hm5C_associated_SNPs_81896 0 0 0 7 113354465 113354486 mRNA hsa-miR-200b OAS1 miRanda miRanda
6591 chr12 113354475 113354475 1 + G A UCEC 113354472 + 113354452 113354492 41 TACCAGCAACTCTGCATCTACTGGACAAAGTATTATGACTT TACCAGCAACTCTGCATCTACTGAACAAAGTATTATGACTT < 41bp 0.720050488270519 0.492336778254719 0.16485438 0.12306395 prediction 0.440100976541038 Functional Loss - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113354472 chr12:113354475 stopgain 0.895 0 24 hm5C_associated_SNPs_81896 0 0 0 7 113354455 113354477 mRNA hsa-miR-145 OAS1 miRanda miRanda
6592 chr12 113354475 113354475 1 + G A UCEC 113354472 + 113354452 113354492 41 TACCAGCAACTCTGCATCTACTGGACAAAGTATTATGACTT TACCAGCAACTCTGCATCTACTGAACAAAGTATTATGACTT < 41bp 0.720050488270519 0.492336778254719 0.16485438 0.12306395 prediction 0.440100976541038 Functional Loss - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113354472 chr12:113354475 stopgain 0.895 0 24 hm5C_associated_SNPs_81896 0 0 0 7 113354464 113354486 mRNA hsa-miR-200c OAS1 miRanda miRanda
6593 chr12 113354475 113354475 1 + G A UCEC 113354472 + 113354452 113354492 41 TACCAGCAACTCTGCATCTACTGGACAAAGTATTATGACTT TACCAGCAACTCTGCATCTACTGAACAAAGTATTATGACTT < 41bp 0.720050488270519 0.492336778254719 0.16485438 0.12306395 prediction 0.440100976541038 Functional Loss - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113354472 chr12:113354475 stopgain 0.895 0 24 hm5C_associated_SNPs_81896 0 0 0 7 113354468 113354489 mRNA hsa-miR-374a OAS1 miRanda miRanda
6594 chr12 113354475 113354475 1 + G A UCEC 113354472 + 113354452 113354492 41 TACCAGCAACTCTGCATCTACTGGACAAAGTATTATGACTT TACCAGCAACTCTGCATCTACTGAACAAAGTATTATGACTT < 41bp 0.720050488270519 0.492336778254719 0.16485438 0.12306395 prediction 0.440100976541038 Functional Loss - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113354472 chr12:113354475 stopgain 0.895 0 24 hm5C_associated_SNPs_81896 0 0 0 7 113354463 113354486 mRNA hsa-miR-429 OAS1 miRanda miRanda
6595 chr12 113354475 113354475 1 + G A UCEC 113354472 + 113354452 113354492 41 TACCAGCAACTCTGCATCTACTGGACAAAGTATTATGACTT TACCAGCAACTCTGCATCTACTGAACAAAGTATTATGACTT < 41bp 0.720050488270519 0.492336778254719 0.16485438 0.12306395 prediction 0.440100976541038 Functional Loss - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113354472 chr12:113354475 stopgain 0.895 0 24 hm5C_associated_SNPs_81896 0 0 0 7 113354468 113354489 mRNA hsa-miR-374b OAS1 miRanda miRanda
6596 chr2 27322561 27322561 1 - C T UCEC 27322564 - 27322544 27322584 41 TTCTTGCCGGCCACCTGGCACCCGAATCTCAGTGCTTCCTG TTCTTGCCGGCCACCTGGCACCCAAATCTCAGTGCTTCCTG < 41bp 0.719989414170789 0.477501684669397 0.19417846 0.015150964 prediction 0.439978828341579 Functional Loss - KHK ENSG00000138030 CDS Human protein_coding chr2:27322564 chr2:27322561 synonymous SNV . 0 24 hm5C_associated_SNPs_81956 0 0 0 1 27322545 27322567 mRNA hsa-miR-7 CGREF1 miRanda miRanda
6597 chr19 53929947 53929947 1 + G A rs540340374 53929944 + 53929924 53929964 41 CCTACTGTGAACTGTGCATGCGAGGGATCTGGGTTGCATGC CCTACTGTGAACTGTGCATGCGAAGGATCTGGGTTGCATGC < 41bp 0.724736809185542 0.504766079167747 0.9206427 0.3976364 prediction 0.43994146003559 Functional Loss - ZNF765-ZNF761 ENSG00000196417 UTR3 Human protein_coding chr19:53929944 chr19:53929947 . . 0 24 hm5C_associated_SNPs_81972 0 0 1 1 53929944 53929966 mRNA hsa-miR-424 ZNF765 miRanda miRanda
6598 chr22 18571120 18571120 1 + G A rs147096782 18571117 + 18571097 18571137 41 GAAAAGGAGGGGTTTGGGGACAGGGACTGTGTCCATGAAAC GAAAAGGAGGGGTTTGGGGACAGAGACTGTGTCCATGAAAC < 41bp 0.764980517340338 0.545027147184525 0.10175535 0.068190336 prediction 0.439906740311627 Functional Loss - PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18571117 chr22:18571120 . . 0 24 hm5C_associated_SNPs_81980 0 0 1 3 18571120 18571143 mRNA hsa-miR-206 PEX26 miRanda miRanda
6599 chr22 18571120 18571120 1 + G A rs147096782 18571117 + 18571097 18571137 41 GAAAAGGAGGGGTTTGGGGACAGGGACTGTGTCCATGAAAC GAAAAGGAGGGGTTTGGGGACAGAGACTGTGTCCATGAAAC < 41bp 0.764980517340338 0.545027147184525 0.10175535 0.068190336 prediction 0.439906740311627 Functional Loss - PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18571117 chr22:18571120 . . 0 24 hm5C_associated_SNPs_81980 0 0 1 3 18571100 18571122 mRNA hsa-miR-339-5p PEX26 miRanda miRanda
6600 chr22 18571120 18571120 1 + G A rs147096782 18571117 + 18571097 18571137 41 GAAAAGGAGGGGTTTGGGGACAGGGACTGTGTCCATGAAAC GAAAAGGAGGGGTTTGGGGACAGAGACTGTGTCCATGAAAC < 41bp 0.764980517340338 0.545027147184525 0.10175535 0.068190336 prediction 0.439906740311627 Functional Loss - PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18571117 chr22:18571120 . . 0 24 hm5C_associated_SNPs_81980 0 0 1 3 18571108 18571133 mRNA hsa-miR-425 PEX26 miRanda miRanda
6601 chr11 125514440 125514440 1 + C T HNSC 125514438 + 125514418 125514458 41 GCGGTTGGTCAAAAGAATGACACGATTCTTTACCAAATTGG GCGGTTGGTCAAAAGAATGACATGATTCTTTACCAAATTGG < 41bp 0.719910668102818 0.427589731881869 0.051676214 0.10720557 prediction 0.439821336205637 Functional Loss - CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125514438 chr11:125514440 stopgain 0.997 1 23 hm5C_associated_SNPs_82002 1 0 1 2 125514418 125514442 mRNA hsa-miR-187 CHEK1 miRanda miRanda
6602 chr11 125514440 125514440 1 + C T HNSC 125514438 + 125514418 125514458 41 GCGGTTGGTCAAAAGAATGACACGATTCTTTACCAAATTGG GCGGTTGGTCAAAAGAATGACATGATTCTTTACCAAATTGG < 41bp 0.719910668102818 0.427589731881869 0.051676214 0.10720557 prediction 0.439821336205637 Functional Loss - CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125514438 chr11:125514440 stopgain 0.997 1 23 hm5C_associated_SNPs_82002 1 0 1 2 125514423 125514449 mRNA hsa-miR-186 CHEK1 miRanda miRanda
6603 chr11 125514441 125514441 1 + G A STAD 125514438 + 125514418 125514458 41 GCGGTTGGTCAAAAGAATGACACGATTCTTTACCAAATTGG GCGGTTGGTCAAAAGAATGACACAATTCTTTACCAAATTGG < 41bp 0.719910668102818 0.493940644466431 0.051676214 0.036723524 prediction 0.439821336205637 Functional Loss - CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125514438 chr11:125514441 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_82003 0 0 1 3 125514418 125514442 mRNA hsa-miR-187 CHEK1 miRanda miRanda
6604 chr11 125514441 125514441 1 + G A STAD 125514438 + 125514418 125514458 41 GCGGTTGGTCAAAAGAATGACACGATTCTTTACCAAATTGG GCGGTTGGTCAAAAGAATGACACAATTCTTTACCAAATTGG < 41bp 0.719910668102818 0.493940644466431 0.051676214 0.036723524 prediction 0.439821336205637 Functional Loss - CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125514438 chr11:125514441 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_82003 0 0 1 3 125514423 125514449 mRNA hsa-miR-186 CHEK1 miRanda miRanda
6605 chr11 125514441 125514441 1 + G A STAD 125514438 + 125514418 125514458 41 GCGGTTGGTCAAAAGAATGACACGATTCTTTACCAAATTGG GCGGTTGGTCAAAAGAATGACACAATTCTTTACCAAATTGG < 41bp 0.719910668102818 0.493940644466431 0.051676214 0.036723524 prediction 0.439821336205637 Functional Loss - CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125514438 chr11:125514441 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_82003 0 0 1 3 125514441 125514463 mRNA hsa-miR-324-5p CHEK1 miRanda miRanda
6606 chr10 102824919 102824919 1 + G A rs144371065 102824916 + 102824896 102824936 41 GGGGTACAAAGGGGCCCATGCAGGAGATGCCCTGGCCAGTA GGGGTACAAAGGGGCCCATGCAGAAGATGCCCTGGCCAGTA < 41bp 0.719909311166334 0.493400181970149 0.9291229 0.77065337 prediction 0.439818622332668 Functional Loss - KAZALD1 ENSG00000107821 UTR3 Human protein_coding chr10:102824916 chr10:102824919 . . 0 24 hm5C_associated_SNPs_82008 0 0 0 2 102824915 102824936 mRNA hsa-miR-193a-3p KAZALD1 miRanda miRanda
6607 chr10 102824919 102824919 1 + G A rs144371065 102824916 + 102824896 102824936 41 GGGGTACAAAGGGGCCCATGCAGGAGATGCCCTGGCCAGTA GGGGTACAAAGGGGCCCATGCAGAAGATGCCCTGGCCAGTA < 41bp 0.719909311166334 0.493400181970149 0.9291229 0.77065337 prediction 0.439818622332668 Functional Loss - KAZALD1 ENSG00000107821 UTR3 Human protein_coding chr10:102824916 chr10:102824919 . . 0 24 hm5C_associated_SNPs_82008 0 0 0 2 102824915 102824936 mRNA hsa-miR-193b KAZALD1 miRanda miRanda
6608 chr2 98351867 98351867 1 + G A UCEC 98351864 + 98351844 98351884 41 GCCAGGCCGAGGCCCTCATGCTGGTCATGGAGATGGCTGGG GCCAGGCCGAGGCCCTCATGCTGATCATGGAGATGGCTGGG < 41bp 0.799674692356944 0.579770270446972 0.15498129 0.20240214 prediction 0.439808843819943 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98351864 chr2:98351867 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_82010 0 0 0 1 98351847 98351868 mRNA hsa-miR-338-3p ZAP70 miRanda miRanda
6609 chr10 71018677 71018677 1 + G A rs367554536 71018674 + 71018654 71018694 41 GACATCTGGACCCGATACGACACGGAGGTGGATGAGGGGTC GACATCTGGACCCGATACGACACAGAGGTGGATGAGGGGTC < 41bp 0.719891270203937 0.473087350563 0.12067929 0.04857853 prediction 0.439782540407875 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71018674 chr10:71018677 synonymous SNV . 0 24 hm5C_associated_SNPs_82019 0 0 0 1 71018667 71018689 mRNA hsa-miR-197 HKDC1 miRanda miRanda
6610 chr10 71018676 71018676 1 + C T ESCA 71018674 + 71018654 71018694 41 GACATCTGGACCCGATACGACACGGAGGTGGATGAGGGGTC GACATCTGGACCCGATACGACATGGAGGTGGATGAGGGGTC < 41bp 0.719891270203937 0.438209251243332 0.12067929 0.1583133 prediction 0.439782540407875 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71018674 chr10:71018676 nonsynonymous SNV 0.037 2 23 hm5C_associated_SNPs_82020 0 0 0 1 71018667 71018689 mRNA hsa-miR-197 HKDC1 miRanda miRanda
6611 chr16 56717202 56717202 1 + A C rs149181278 56717201 + 56717181 56717221 41 CCAAGTTAGAGCAGGGAACCCAGAGCTCTGCAGGCAGGGGC CCAAGTTAGAGCAGGGAACCCCGAGCTCTGCAGGCAGGGGC < 41bp 0.837275411498692 0.617454447817804 0.49444497 0.55190235 prediction 0.439641927361776 Functional Loss - MT1X ENSG00000259827 ncRNA_exonic Human processed_transcript chr16:56717201 chr16:56717202 . . 0 22 hm5C_associated_SNPs_82074 0 0 0 2 56717183 56717206 mRNA hsa-miR-330-5p MT1X miRanda miRanda
6612 chr16 56717202 56717202 1 + A C rs149181278 56717201 + 56717181 56717221 41 CCAAGTTAGAGCAGGGAACCCAGAGCTCTGCAGGCAGGGGC CCAAGTTAGAGCAGGGAACCCCGAGCTCTGCAGGCAGGGGC < 41bp 0.837275411498692 0.617454447817804 0.49444497 0.55190235 prediction 0.439641927361776 Functional Loss - MT1X ENSG00000259827 ncRNA_exonic Human processed_transcript chr16:56717201 chr16:56717202 . . 0 22 hm5C_associated_SNPs_82074 0 0 0 2 56717186 56717206 mRNA hsa-miR-326 MT1X miRanda miRanda
6613 chr14 75476071 75476071 1 + G C rs4556 75476067 + 75476047 75476087 41 CCCGTAACAAGGGCACACATCCAGGACTGTGTCTTGCCTTT CCCGTAACAAGGGCACACATCCAGCACTGTGTCTTGCCTTT < 41bp 0.719770102447346 0.434061772176036 0.91838825 0.24515113 prediction 0.439540204894693 Functional Loss - EIF2B2 ENSG00000119718 UTR3 Human protein_coding chr14:75476067 chr14:75476071 . . 0 25 hm5C_associated_SNPs_82109 2 0 1 2 75476065 75476085 mRNA hsa-miR-31 EIF2B2 miRanda miRanda
6614 chr14 75476071 75476071 1 + G C rs4556 75476067 + 75476047 75476087 41 CCCGTAACAAGGGCACACATCCAGGACTGTGTCTTGCCTTT CCCGTAACAAGGGCACACATCCAGCACTGTGTCTTGCCTTT < 41bp 0.719770102447346 0.434061772176036 0.91838825 0.24515113 prediction 0.439540204894693 Functional Loss - EIF2B2 ENSG00000119718 UTR3 Human protein_coding chr14:75476067 chr14:75476071 . . 0 25 hm5C_associated_SNPs_82109 2 0 1 2 75476070 75476090 mRNA hsa-miR-488 EIF2B2 miRanda miRanda
6615 chr10 38652501 38652501 1 + A T BRCA 38652497 + 38652477 38652517 41 AGATCACTGCTGATGGACTTCAGGAGGTGTTTGAGACCGAT AGATCACTGCTGATGGACTTCAGGTGGTGTTTGAGACCGAT < 41bp 0.874626686518157 0.65488974156037 0.90119344 0.89925337 prediction 0.439473889915576 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38652497 chr10:38652501 . . 0 25 hm5C_associated_SNPs_82126 0 0 1 1 38652493 38652512 mRNA hsa-miR-371-5p HSD17B7P2 miRanda miRanda
6616 chr20 1287704 1287704 1 + G A rs146535155 1287701 + 1287681 1287721 41 CCCCGAGTTTCTCTGGGGCCCTCGGGCCCAACTTCTGCTTT CCCCGAGTTTCTCTGGGGCCCTCAGGCCCAACTTCTGCTTT < 41bp 0.71969207692389 0.479189309487137 0.88842237 0.8539527 prediction 0.439384153847781 Functional Loss - SNPH ENSG00000101298 UTR3 Human protein_coding chr20:1287701 chr20:1287704 . . 0 24 hm5C_associated_SNPs_82157 0 0 0 2 1287704 1287727 mRNA hsa-miR-130a SNPH miRanda miRanda
6617 chr20 1287704 1287704 1 + G A rs146535155 1287701 + 1287681 1287721 41 CCCCGAGTTTCTCTGGGGCCCTCGGGCCCAACTTCTGCTTT CCCCGAGTTTCTCTGGGGCCCTCAGGCCCAACTTCTGCTTT < 41bp 0.71969207692389 0.479189309487137 0.88842237 0.8539527 prediction 0.439384153847781 Functional Loss - SNPH ENSG00000101298 UTR3 Human protein_coding chr20:1287701 chr20:1287704 . . 0 24 hm5C_associated_SNPs_82157 0 0 0 2 1287704 1287727 mRNA hsa-miR-130b SNPH miRanda miRanda
6618 chr9 71869245 71869245 1 + C T LGG 71869243 + 71869223 71869263 41 AGCTGTCAGAACACTCCAAGCGCGGTTACTATGGCCAGTCT AGCTGTCAGAACACTCCAAGCGTGGTTACTATGGCCAGTCT < 41bp 0.719685432520648 0.461174398260581 0.91482216 0.90605855 prediction 0.439370865041297 Functional Loss - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71869243 chr9:71869245 synonymous SNV . 0 23 hm5C_associated_SNPs_82162 0 0 1 2 71869240 71869262 mRNA hsa-miR-193a-3p TJP2 miRanda miRanda
6619 chr9 71869245 71869245 1 + C T LGG 71869243 + 71869223 71869263 41 AGCTGTCAGAACACTCCAAGCGCGGTTACTATGGCCAGTCT AGCTGTCAGAACACTCCAAGCGTGGTTACTATGGCCAGTCT < 41bp 0.719685432520648 0.461174398260581 0.91482216 0.90605855 prediction 0.439370865041297 Functional Loss - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71869243 chr9:71869245 synonymous SNV . 0 23 hm5C_associated_SNPs_82162 0 0 1 2 71869241 71869262 mRNA hsa-miR-193b TJP2 miRanda miRanda
6620 chr2 24286001 24286001 1 + C T SKCM 24285999 + 24285979 24286019 41 GCATATGGAGCCACGGGCCACCCCGGTGTCATCCCTCCCAA GCATATGGAGCCACGGGCCACCTCGGTGTCATCCCTCCCAA < 41bp 0.815051881536407 0.595492969683132 0.09387618 0.090608954 prediction 0.439117823706551 Functional Loss - FKBP1B ENSG00000119782 CDS Human protein_coding chr2:24285999 chr2:24286001 nonsynonymous SNV 0.953 2 23 hm5C_associated_SNPs_82220 0 0 1 1 24285988 24286011 mRNA hsa-miR-425 FKBP1B miRanda miRanda
6621 chr3 12421374 12421374 1 + G A SKCM 12421371 + 12421351 12421391 41 TTACGAAGACATTCCATTCACAAGAACAGATCCAGTGGTTG TTACGAAGACATTCCATTCACAAAAACAGATCCAGTGGTTG < 41bp 0.727403837124849 0.50786101540003 0.014599323 0.007586777 prediction 0.439085643449639 Functional Loss - PPARG ENSG00000132170 CDS Human protein_coding chr3:12421371 chr3:12421374 nonsynonymous SNV 0.669 1 24 hm5C_associated_SNPs_82235 0 0 1 2 12421374 12421398 mRNA hsa-miR-216a PPARG miRanda miRanda
6622 chr3 12421374 12421374 1 + G A SKCM 12421371 + 12421351 12421391 41 TTACGAAGACATTCCATTCACAAGAACAGATCCAGTGGTTG TTACGAAGACATTCCATTCACAAAAACAGATCCAGTGGTTG < 41bp 0.727403837124849 0.50786101540003 0.014599323 0.007586777 prediction 0.439085643449639 Functional Loss - PPARG ENSG00000132170 CDS Human protein_coding chr3:12421371 chr3:12421374 nonsynonymous SNV 0.669 1 24 hm5C_associated_SNPs_82235 0 0 1 2 12421353 12421374 mRNA hsa-miR-758 PPARG miRanda miRanda
6623 chr2 9628400 9628400 1 + G T UCEC 9628398 + 9628378 9628418 41 CTACCTTTGCTGCTTCCTTACTGGCGGGATGTAGCAGAAGC CTACCTTTGCTGCTTCCTTACTTGCGGGATGTAGCAGAAGC < 41bp 0.719525513388996 0.38249726379843 0.20880088 0.021270156 prediction 0.439051026777991 Functional Loss - IAH1 ENSG00000134330 CDS Human protein_coding chr2:9628398 chr2:9628400 nonsynonymous SNV 0.866 3 23 hm5C_associated_SNPs_82255 0 0 1 3 9628393 9628413 mRNA hsa-miR-221 IAH1 miRanda miRanda
6624 chr2 9628400 9628400 1 + G T UCEC 9628398 + 9628378 9628418 41 CTACCTTTGCTGCTTCCTTACTGGCGGGATGTAGCAGAAGC CTACCTTTGCTGCTTCCTTACTTGCGGGATGTAGCAGAAGC < 41bp 0.719525513388996 0.38249726379843 0.20880088 0.021270156 prediction 0.439051026777991 Functional Loss - IAH1 ENSG00000134330 CDS Human protein_coding chr2:9628398 chr2:9628400 nonsynonymous SNV 0.866 3 23 hm5C_associated_SNPs_82255 0 0 1 3 9628393 9628413 mRNA hsa-miR-222 IAH1 miRanda miRanda
6625 chr2 9628400 9628400 1 + G T UCEC 9628398 + 9628378 9628418 41 CTACCTTTGCTGCTTCCTTACTGGCGGGATGTAGCAGAAGC CTACCTTTGCTGCTTCCTTACTTGCGGGATGTAGCAGAAGC < 41bp 0.719525513388996 0.38249726379843 0.20880088 0.021270156 prediction 0.439051026777991 Functional Loss - IAH1 ENSG00000134330 CDS Human protein_coding chr2:9628398 chr2:9628400 nonsynonymous SNV 0.866 3 23 hm5C_associated_SNPs_82255 0 0 1 3 9628395 9628417 mRNA hsa-miR-544 IAH1 miRanda miRanda
6626 chr19 44570662 44570662 1 + T C GBM 44570661 + 44570641 44570681 41 AACTCATCAGAGAGTCCATACTGGAGAGAAACCTTTCAAAT AACTCATCAGAGAGTCCATACCGGAGAGAAACCTTTCAAAT < 41bp 0.799060413340744 0.579541455515548 0.13653642 0.5877507 prediction 0.439037915650391 Functional Loss - ZNF223 ENSG00000178386;ENSG00000267022 CDS Human other chr19:44570661 chr19:44570662 synonymous SNV . 0 22 hm5C_associated_SNPs_82256 0 0 0 1 44570660 44570679 mRNA hsa-miR-488 ZNF284 miRanda miRanda
6627 chr1 170508453 170508453 1 + A T LUSC 170508449 + 170508429 170508469 41 AAAGCCAAAAACTTGGGCTTCAAGATGGATCAACCTCATTA AAAGCCAAAAACTTGGGCTTCAAGTTGGATCAACCTCATTA < 41bp 0.71951338437003 0.448059339312635 0.16285959 0.080228746 prediction 0.439026768740061 Functional Loss - GORAB ENSG00000120370 CDS Human protein_coding chr1:170508449 chr1:170508453 nonsynonymous SNV 0.981 0 25 hm5C_associated_SNPs_82261 0 0 1 1 170508443 170508465 mRNA hsa-miR-154 GORAB miRanda miRanda
6628 chr1 28920855 28920855 1 + G A rs115996155 28920852 + 28920832 28920872 41 ATCCTAGCATTTTTGGAGGCCAAGGACAGTGGATCACCTGA ATCCTAGCATTTTTGGAGGCCAAAGACAGTGGATCACCTGA < 41bp 0.775643769344244 0.556149425307128 0.88271177 0.7081251 prediction 0.438988688074232 Functional Loss - RAB42 ENSG00000188060 UTR3 Human protein_coding chr1:28920852 chr1:28920855 . . 0 24 hm5C_associated_SNPs_82278 0 0 0 1 28920846 28920872 mRNA hsa-miR-125a-3p RAB42 miRanda miRanda
6629 chr4 4304316 4304316 1 + G A rs149969128 4304313 + 4304293 4304333 41 AGCACCTCTACAGACCTTACCACGGTAGAGAGCCAGCCTTG AGCACCTCTACAGACCTTACCACAGTAGAGAGCCAGCCTTG < 41bp 0.822937409461463 0.603455329516771 0.8280773 0.45998693 prediction 0.438964159889385 Functional Loss - ZBTB49 ENSG00000168826 CDS Human protein_coding chr4:4304313 chr4:4304316 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_82284 0 0 0 1 4304307 4304329 mRNA hsa-miR-149 ZBTB49 miRanda miRanda
6630 chr9 97222789 97222789 1 + C T rs111461492 97222787 + 97222767 97222807 41 GGTTTTATGAAGCTGAGTTTCACGATAAGTGTCTTGCTATT GGTTTTATGAAGCTGAGTTTCATGATAAGTGTCTTGCTATT < 41bp 0.773521185104651 0.55404307744171 0.15139735 0.1848917 prediction 0.438956215325883 Functional Loss - MFSD14B ENSG00000148110 UTR3 Human protein_coding chr9:97222787 chr9:97222789 . . 0 23 hm5C_associated_SNPs_82287 0 0 1 1 97222785 97222805 mRNA hsa-miR-31 HIATL1 miRanda miRanda
6631 chr1 205568274 205568274 1 + G A rs146674823 205568271 + 205568251 205568291 41 TTTGGCAGATATTCCAGGCTCAGGGCAGCTATAGTTTCCTG TTTGGCAGATATTCCAGGCTCAGAGCAGCTATAGTTTCCTG < 41bp 0.786742177225792 0.567284945926077 0.60518086 0.46350467 prediction 0.438914462599429 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205568271 chr1:205568274 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_82304 0 0 0 5 205568259 205568281 mRNA hsa-miR-22 MFSD4 miRanda miRanda
6632 chr1 205568274 205568274 1 + G A rs146674823 205568271 + 205568251 205568291 41 TTTGGCAGATATTCCAGGCTCAGGGCAGCTATAGTTTCCTG TTTGGCAGATATTCCAGGCTCAGAGCAGCTATAGTTTCCTG < 41bp 0.786742177225792 0.567284945926077 0.60518086 0.46350467 prediction 0.438914462599429 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205568271 chr1:205568274 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_82304 0 0 0 5 205568262 205568281 mRNA hsa-miR-22 MFSD4 miRanda miRanda
6633 chr1 205568274 205568274 1 + G A rs146674823 205568271 + 205568251 205568291 41 TTTGGCAGATATTCCAGGCTCAGGGCAGCTATAGTTTCCTG TTTGGCAGATATTCCAGGCTCAGAGCAGCTATAGTTTCCTG < 41bp 0.786742177225792 0.567284945926077 0.60518086 0.46350467 prediction 0.438914462599429 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205568271 chr1:205568274 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_82304 0 0 0 5 205568259 205568276 mRNA hsa-miR-125b MFSD4 miRanda miRanda
6634 chr1 205568274 205568274 1 + G A rs146674823 205568271 + 205568251 205568291 41 TTTGGCAGATATTCCAGGCTCAGGGCAGCTATAGTTTCCTG TTTGGCAGATATTCCAGGCTCAGAGCAGCTATAGTTTCCTG < 41bp 0.786742177225792 0.567284945926077 0.60518086 0.46350467 prediction 0.438914462599429 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205568271 chr1:205568274 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_82304 0 0 0 5 205568259 205568276 mRNA hsa-miR-125a-5p MFSD4 miRanda miRanda
6635 chr1 205568274 205568274 1 + G A rs146674823 205568271 + 205568251 205568291 41 TTTGGCAGATATTCCAGGCTCAGGGCAGCTATAGTTTCCTG TTTGGCAGATATTCCAGGCTCAGAGCAGCTATAGTTTCCTG < 41bp 0.786742177225792 0.567284945926077 0.60518086 0.46350467 prediction 0.438914462599429 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205568271 chr1:205568274 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_82304 0 0 0 5 205568259 205568278 mRNA hsa-miR-874 MFSD4 miRanda miRanda
6636 chr2 103431605 103431605 1 + C T rs146311996 103431603 + 103431583 103431623 41 GGTCCTAGAATCTCTCCAGACACCAGCAAGCCTCTATCTTG GGTCCTAGAATCTCTCCAGACATCAGCAAGCCTCTATCTTG < 41bp 0.719442694684329 0.472664230640446 0.025454938 0.031793326 prediction 0.438885389368658 Functional Loss - TMEM182 ENSG00000170417 UTR3 Human protein_coding chr2:103431603 chr2:103431605 . . 0 23 hm5C_associated_SNPs_82313 0 0 0 1 103431588 103431610 mRNA hsa-miR-138 TMEM182 miRanda miRanda
6637 chr14 24113644 24113644 1 + G A UCEC 24113641 + 24113621 24113661 41 CTGGGTGTCTACAATGTCAGCAAGACAGCGCTGCTGGGTCT CTGGGTGTCTACAATGTCAGCAAAACAGCGCTGCTGGGTCT < 41bp 0.787124522161487 0.567716820338253 0.882585 0.78745306 prediction 0.438815403646468 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113641 chr14:24113644 synonymous SNV . 0 24 hm5C_associated_SNPs_82333 0 0 1 2 24113625 24113651 mRNA hsa-miR-187 DHRS2 miRanda miRanda
6638 chr14 24113644 24113644 1 + G A UCEC 24113641 + 24113621 24113661 41 CTGGGTGTCTACAATGTCAGCAAGACAGCGCTGCTGGGTCT CTGGGTGTCTACAATGTCAGCAAAACAGCGCTGCTGGGTCT < 41bp 0.787124522161487 0.567716820338253 0.882585 0.78745306 prediction 0.438815403646468 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113641 chr14:24113644 synonymous SNV . 0 24 hm5C_associated_SNPs_82333 0 0 1 2 24113627 24113647 mRNA hsa-miR-431 DHRS2 miRanda miRanda
6639 chr1 205554083 205554083 1 + G A COAD 205554080 + 205554060 205554100 41 TCCTTCTTTGCCATCCACATCACGGGCGCCCTGGTACTGTT TCCTTCTTTGCCATCCACATCACAGGCGCCCTGGTACTGTT < 41bp 0.799813737096247 0.58043576044745 0.5162174 0.22520629 prediction 0.438755953297594 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205554080 chr1:205554083 synonymous SNV . 0 24 hm5C_associated_SNPs_82358 0 0 0 1 205554080 205554100 mRNA hsa-miR-101 MFSD4 miRanda miRanda
6640 chr11 47259499 47259499 1 + T C UCEC 47259498 + 47259478 47259518 41 ATCGACGTGTTCGATGGAAACTCAGGGAAGATGATGTGTCA ATCGACGTGTTCGATGGAAACCCAGGGAAGATGATGTGTCA < 41bp 0.719371646557475 0.459696240464183 0.3290511 0.41166192 prediction 0.43874329311495 Functional Loss - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47259498 chr11:47259499 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_82367 0 0 1 2 47259480 47259505 mRNA hsa-miR-125b DDB2 miRanda miRanda
6641 chr11 47259499 47259499 1 + T C UCEC 47259498 + 47259478 47259518 41 ATCGACGTGTTCGATGGAAACTCAGGGAAGATGATGTGTCA ATCGACGTGTTCGATGGAAACCCAGGGAAGATGATGTGTCA < 41bp 0.719371646557475 0.459696240464183 0.3290511 0.41166192 prediction 0.43874329311495 Functional Loss - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47259498 chr11:47259499 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_82367 0 0 1 2 47259480 47259505 mRNA hsa-miR-125a-5p DDB2 miRanda miRanda
6642 chr16 30012758 30012758 1 + A C rs4389160 30012754 + 30012734 30012774 41 GCTGGCCTCCTCCCGCTACCCCCCATTCCCTTCTGACTACC GCTGGCCTCCTCCCGCTACCCCCCCTTCCCTTCTGACTACC < 41bp 0.719342464793769 0.29529427546169 0.028236806 0.015285939 prediction 0.438684929587537 Functional Loss - INO80E ENSG00000169592 CDS Human protein_coding chr16:30012754 chr16:30012758 synonymous SNV . 0 25 hm5C_associated_SNPs_82384 0 0 1 2 30012755 30012776 mRNA hsa-miR-196a INO80E miRanda miRanda
6643 chr16 30012758 30012758 1 + A C rs4389160 30012754 + 30012734 30012774 41 GCTGGCCTCCTCCCGCTACCCCCCATTCCCTTCTGACTACC GCTGGCCTCCTCCCGCTACCCCCCCTTCCCTTCTGACTACC < 41bp 0.719342464793769 0.29529427546169 0.028236806 0.015285939 prediction 0.438684929587537 Functional Loss - INO80E ENSG00000169592 CDS Human protein_coding chr16:30012754 chr16:30012758 synonymous SNV . 0 25 hm5C_associated_SNPs_82384 0 0 1 2 30012755 30012776 mRNA hsa-miR-196b INO80E miRanda miRanda
6644 chr4 40811406 40811406 1 + C T rs115281066 40811404 + 40811384 40811424 41 GTAGTCGTGACTTTCTCAGTCACGATCAAGGGTGATTTTTT GTAGTCGTGACTTTCTCAGTCATGATCAAGGGTGATTTTTT < 41bp 0.80994323438414 0.590656285464905 0.008321464 0.007555932 prediction 0.43857389783847 Functional Loss - NSUN7 ENSG00000179299 UTR3 Human protein_coding chr4:40811404 chr4:40811406 . . 0 23 hm5C_associated_SNPs_82426 0 0 0 2 40811386 40811407 mRNA hsa-miR-134 NSUN7 miRanda miRanda
6645 chr4 40811406 40811406 1 + C T rs115281066 40811404 + 40811384 40811424 41 GTAGTCGTGACTTTCTCAGTCACGATCAAGGGTGATTTTTT GTAGTCGTGACTTTCTCAGTCATGATCAAGGGTGATTTTTT < 41bp 0.80994323438414 0.590656285464905 0.008321464 0.007555932 prediction 0.43857389783847 Functional Loss - NSUN7 ENSG00000179299 UTR3 Human protein_coding chr4:40811404 chr4:40811406 . . 0 23 hm5C_associated_SNPs_82426 0 0 0 2 40811388 40811410 mRNA hsa-miR-487b NSUN7 miRanda miRanda
6646 chr18 22057250 22057250 1 + G A SKCM 22057247 + 22057227 22057267 41 CATGTTGAACTGCTTAGAGCCAGGAGATTAGCCAAGTCACT CATGTTGAACTGCTTAGAGCCAGAAGATTAGCCAAGTCACT < 41bp 0.770574602046541 0.551344443657812 0.9245725 0.8733605 prediction 0.438460316777456 Functional Loss - HRH4 ENSG00000134489 CDS Human protein_coding chr18:22057247 chr18:22057250 synonymous SNV . 0 24 hm5C_associated_SNPs_82473 0 0 0 1 22057227 22057250 mRNA hsa-miR-149 HRH4 miRanda miRanda
6647 chr19 43866488 43866488 1 + G A UCEC 43866485 + 43866465 43866505 41 CCTGCTAACTCTATTACCCCCACGATTCTTCACCGCTGCTG CCTGCTAACTCTATTACCCCCACAATTCTTCACCGCTGCTG < 41bp 0.771877224250002 0.55268963784382 0.09247136 0.14766675 prediction 0.438375172812363 Functional Loss - CD177 ENSG00000272396 ncRNA_intronic Human antisense chr19:43866485 chr19:43866488 . . 0 24 hm5C_associated_SNPs_82511 0 0 0 2 43866473 43866488 mRNA hsa-miR-491-5p CD177 miRanda miRanda
6648 chr19 43866488 43866488 1 + G A UCEC 43866485 + 43866465 43866505 41 CCTGCTAACTCTATTACCCCCACGATTCTTCACCGCTGCTG CCTGCTAACTCTATTACCCCCACAATTCTTCACCGCTGCTG < 41bp 0.771877224250002 0.55268963784382 0.09247136 0.14766675 prediction 0.438375172812363 Functional Loss - CD177 ENSG00000272396 ncRNA_intronic Human antisense chr19:43866485 chr19:43866488 . . 0 24 hm5C_associated_SNPs_82511 0 0 0 2 43866482 43866505 mRNA hsa-miR-503 CD177 miRanda miRanda
6649 chr8 6357409 6357409 1 - G A BLCA 6357411 - 6357391 6357431 41 TGAGACAGTTCGAACGGCTCCTCAGAAATCCAGTGACCCAA TGAGACAGTTCGAACGGCTCCTTAGAAATCCAGTGACCCAA < 41bp 0.719161411915523 0.499682695574149 0.065696806 0.07684639 prediction 0.438322823831047 Functional Loss - MCPH1 ENSG00000147316 CDS Human protein_coding chr8:6357411 chr8:6357409 nonsynonymous SNV 0.922 4 23 hm5C_associated_SNPs_82526 0 0 0 1 6357400 6357420 mRNA hsa-miR-876-5p ANGPT2 miRanda miRanda
6650 chr19 53058097 53058097 1 + G T UCEC 53058094 + 53058074 53058114 41 TTCACAGCTGGCACGACATACAAGAATTCACACTGGAGAAA TTCACAGCTGGCACGACATACAATAATTCACACTGGAGAAA < 41bp 0.719145157586066 0.339112372435276 0.17862979 0.028375447 prediction 0.438290315172132 Functional Loss - ZNF808 ENSG00000198482 CDS Human protein_coding chr19:53058094 chr19:53058097 nonsynonymous SNV 0.095 0 24 hm5C_associated_SNPs_82538 0 0 1 3 53058091 53058110 mRNA hsa-miR-199a-5p ZNF808 miRanda miRanda
6651 chr19 53058097 53058097 1 + G T UCEC 53058094 + 53058074 53058114 41 TTCACAGCTGGCACGACATACAAGAATTCACACTGGAGAAA TTCACAGCTGGCACGACATACAATAATTCACACTGGAGAAA < 41bp 0.719145157586066 0.339112372435276 0.17862979 0.028375447 prediction 0.438290315172132 Functional Loss - ZNF808 ENSG00000198482 CDS Human protein_coding chr19:53058094 chr19:53058097 nonsynonymous SNV 0.095 0 24 hm5C_associated_SNPs_82538 0 0 1 3 53058087 53058110 mRNA hsa-miR-199b-5p ZNF808 miRanda miRanda
6652 chr19 53058097 53058097 1 + G T UCEC 53058094 + 53058074 53058114 41 TTCACAGCTGGCACGACATACAAGAATTCACACTGGAGAAA TTCACAGCTGGCACGACATACAATAATTCACACTGGAGAAA < 41bp 0.719145157586066 0.339112372435276 0.17862979 0.028375447 prediction 0.438290315172132 Functional Loss - ZNF808 ENSG00000198482 CDS Human protein_coding chr19:53058094 chr19:53058097 nonsynonymous SNV 0.095 0 24 hm5C_associated_SNPs_82538 0 0 1 3 53058088 53058109 mRNA hsa-miR-125a-3p ZNF808 miRanda miRanda
6653 chr3 52521595 52521595 1 + C T UCEC 52521593 + 52521573 52521613 41 GCTCTGGAATGGGCCCTGGGCGCGGACGAGGACTTCCTGCT GCTCTGGAATGGGCCCTGGGCGTGGACGAGGACTTCCTGCT < 41bp 0.814688599071017 0.595545398050822 0.78309345 0.73624015 prediction 0.438286402040391 Functional Loss - NISCH ENSG00000010322 CDS Human protein_coding chr3:52521593 chr3:52521595 nonsynonymous SNV 0.163 2 23 hm5C_associated_SNPs_82539 0 0 1 1 52521594 52521615 mRNA hsa-miR-214 NISCH miRanda miRanda
6654 chr10 124648206 124648206 1 + C T rs11248323 124648204 + 124648184 124648224 41 AAGGCCGAGTGACAGGAAAACACCACCAAGCCTGATGAAGG AAGGCCGAGTGACAGGAAAACATCACCAAGCCTGATGAAGG < 41bp 0.719137437526804 0.466021660025375 0.12580031 0.07686949 prediction 0.438274875053608 Functional Loss - LOC399815 ENSG00000255624 ncRNA_exonic Human transcribed_processed_pseudogene chr10:124648204 chr10:124648206 . . 0 23 hm5C_associated_SNPs_82542 0 0 0 1 124648204 124648225 mRNA hsa-miR-205 LOC399815 miRanda miRanda
6655 chr14 55004493 55004493 1 + C T KIRC 55004490 + 55004470 55004510 41 GATAGGACTTATAAACTATCCTGCAGAATATTGTATCAATA GATAGGACTTATAAACTATCCTGTAGAATATTGTATCAATA < 41bp 0.738187990650631 0.51905489618016 0.08212119 0.119591 prediction 0.438266188940942 Functional Loss - CGRRF1 ENSG00000100532 CDS Human protein_coding chr14:55004490 chr14:55004493 synonymous SNV . 0 24 hm5C_associated_SNPs_82547 0 0 1 3 55004485 55004506 mRNA hsa-miR-381 CGRRF1 miRanda miRanda
6656 chr14 55004493 55004493 1 + C T KIRC 55004490 + 55004470 55004510 41 GATAGGACTTATAAACTATCCTGCAGAATATTGTATCAATA GATAGGACTTATAAACTATCCTGTAGAATATTGTATCAATA < 41bp 0.738187990650631 0.51905489618016 0.08212119 0.119591 prediction 0.438266188940942 Functional Loss - CGRRF1 ENSG00000100532 CDS Human protein_coding chr14:55004490 chr14:55004493 synonymous SNV . 0 24 hm5C_associated_SNPs_82547 0 0 1 3 55004474 55004498 mRNA hsa-miR-544 CGRRF1 miRanda miRanda
6657 chr14 55004493 55004493 1 + C T KIRC 55004490 + 55004470 55004510 41 GATAGGACTTATAAACTATCCTGCAGAATATTGTATCAATA GATAGGACTTATAAACTATCCTGTAGAATATTGTATCAATA < 41bp 0.738187990650631 0.51905489618016 0.08212119 0.119591 prediction 0.438266188940942 Functional Loss - CGRRF1 ENSG00000100532 CDS Human protein_coding chr14:55004490 chr14:55004493 synonymous SNV . 0 24 hm5C_associated_SNPs_82547 0 0 1 3 55004485 55004506 mRNA hsa-miR-300 CGRRF1 miRanda miRanda
6658 chr1 93301854 93301854 1 + C T UCEC 93301851 + 93301831 93301871 41 GGTCAGCCAGGTGCCTTCACCTGCTATTTGGATGCAGGCCT GGTCAGCCAGGTGCCTTCACCTGTTATTTGGATGCAGGCCT < 41bp 0.734318506667045 0.515209324280488 0.5192293 0.5791417 prediction 0.438218364773114 Functional Loss - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93301851 chr1:93301854 synonymous SNV . 0 24 hm5C_associated_SNPs_82560 0 0 1 1 93301832 93301854 mRNA hsa-miR-125a-3p RPL5 miRanda miRanda
6659 chr1 214491482 214491482 1 + C T CESC 214491480 + 214491460 214491500 41 AGCTGTGAAGGAGTTTGAATCACGTAAGTCTTTCTGTGACC AGCTGTGAAGGAGTTTGAATCATGTAAGTCTTTCTGTGACC < 41bp 0.719048508402701 0.46085214911962 0.6854478 0.50003916 prediction 0.438097016805401 Functional Loss - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214491480 chr1:214491482 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_82604 0 0 0 1 214491464 214491482 mRNA hsa-miR-199a-5p SMYD2 miRanda miRanda
6660 chr11 62532865 62532865 1 + G A LUAD 62532862 + 62532842 62532882 41 AACTCCAACCCACCATGTTACAAGACAATGGATGAGGTGAG AACTCCAACCCACCATGTTACAAAACAATGGATGAGGTGAG < 41bp 0.767918864351079 0.548907188876296 0.15266687 0.14173087 prediction 0.438023350949568 Functional Loss - POLR2G ENSG00000168002 CDS Human protein_coding chr11:62532862 chr11:62532865 synonymous SNV . 0 24 hm5C_associated_SNPs_82631 0 0 1 1 62532848 62532868 mRNA hsa-miR-431 POLR2G miRanda miRanda
6661 chr2 73452826 73452826 1 + T C STAD 73452825 + 73452805 73452845 41 GCCACAGCCGCCACAAGATCCTCAGGTGCCAGCTGGGGACA GCCACAGCCGCCACAAGATCCCCAGGTGCCAGCTGGGGACA < 41bp 0.7189812872619 0.45329578847995 0.101220906 0.14965776 prediction 0.437962574523801 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73452825 chr2:73452826 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_82655 0 0 1 2 73452815 73452829 mRNA hsa-miR-125b SMYD5 miRanda miRanda
6662 chr2 73452826 73452826 1 + T C STAD 73452825 + 73452805 73452845 41 GCCACAGCCGCCACAAGATCCTCAGGTGCCAGCTGGGGACA GCCACAGCCGCCACAAGATCCCCAGGTGCCAGCTGGGGACA < 41bp 0.7189812872619 0.45329578847995 0.101220906 0.14965776 prediction 0.437962574523801 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73452825 chr2:73452826 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_82655 0 0 1 2 73452806 73452829 mRNA hsa-miR-125a-5p SMYD5 miRanda miRanda
6663 chr6 37448763 37448763 1 + G A rs112485104 37448760 + 37448740 37448780 41 AGCAGTAACAAAGGGTACCTCCAGGGGTTTGGGTAGCGCTG AGCAGTAACAAAGGGTACCTCCAAGGGTTTGGGTAGCGCTG < 41bp 0.782739658217912 0.563778449132516 0.94127136 0.77969754 prediction 0.437922418170792 Functional Loss - CMTR1 ENSG00000137200 UTR3 Human protein_coding chr6:37448760 chr6:37448763 . . 0 24 hm5C_associated_SNPs_82666 0 0 1 1 37448740 37448766 mRNA hsa-miR-125a-5p FTSJD2 miRanda miRanda
6664 chr4 4303837 4303837 1 + G A UCEC 4303834 + 4303814 4303854 41 CTTCTCATCTAGATCTTAACCAGGACAATATACAAGTAATG CTTCTCATCTAGATCTTAACCAGAACAATATACAAGTAATG < 41bp 0.757418654478175 0.538472171817832 0.3513707 0.3207925 prediction 0.437892965320686 Functional Loss - ZBTB49 ENSG00000168826 CDS Human protein_coding chr4:4303834 chr4:4303837 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_82681 0 0 0 1 4303836 4303859 mRNA hsa-miR-338-3p ZBTB49 miRanda miRanda
6665 chr20 42264573 42264573 1 + G A rs145672738 42264570 + 42264550 42264590 41 TTGATTATGAACACAGGGCTCACGAGCAGCTAAATGTGAAA TTGATTATGAACACAGGGCTCACAAGCAGCTAAATGTGAAA < 41bp 0.748708363852977 0.52976915027511 0.061805725 0.0049910545 prediction 0.437878427155734 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42264570 chr20:42264573 nonsynonymous SNV 0.950 1 24 hm5C_associated_SNPs_82686 0 0 1 2 42264569 42264589 mRNA hsa-miR-23a IFT52 miRanda miRanda
6666 chr20 42264573 42264573 1 + G A rs145672738 42264570 + 42264550 42264590 41 TTGATTATGAACACAGGGCTCACGAGCAGCTAAATGTGAAA TTGATTATGAACACAGGGCTCACAAGCAGCTAAATGTGAAA < 41bp 0.748708363852977 0.52976915027511 0.061805725 0.0049910545 prediction 0.437878427155734 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42264570 chr20:42264573 nonsynonymous SNV 0.950 1 24 hm5C_associated_SNPs_82686 0 0 1 2 42264569 42264589 mRNA hsa-miR-23b IFT52 miRanda miRanda
6667 chrX 101826528 101826528 1 + G A rs145643857 101826525 + 101826505 101826545 41 GCCAAAGTTAACTTGCAGGCCGGGTAACATAACCACTTGAA GCCAAAGTTAACTTGCAGGCCGGATAACATAACCACTTGAA < 41bp 0.718797372592901 0.478490303495407 0.7886042 0.39673394 prediction 0.437594745185802 Functional Loss - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101826525 chrX:101826528 . . 0 24 hm5C_associated_SNPs_82796 0 0 0 1 101826518 101826542 mRNA hsa-miR-140-5p NXF4 miRanda miRanda
6668 chr7 137773440 137773440 1 + G A SKCM 137773437 + 137773417 137773457 41 CCTACATCTACCAAAATGAACACGAAGTTGGGGAGGCCATC CCTACATCTACCAAAATGAACACAAAGTTGGGGAGGCCATC < 41bp 0.76621941768727 0.547429983833558 0.09440559 0.052036464 prediction 0.437578867707425 Functional Loss - AKR1D1 ENSG00000122787 CDS Human protein_coding chr7:137773437 chr7:137773440 nonsynonymous SNV 0.339 4 24 hm5C_associated_SNPs_82802 0 0 1 1 137773436 137773462 mRNA hsa-miR-125a-5p AKR1D1 miRanda miRanda
6669 chr8 39871110 39871110 1 + C T ESCA 39871107 + 39871087 39871127 41 GAAAGACAACCCAGCAATGCCTGCAGGGCTGATGTATGAAG GAAAGACAACCCAGCAATGCCTGTAGGGCTGATGTATGAAG < 41bp 0.732476550548716 0.513696845752256 0.12662244 0.1192694 prediction 0.43755940959292 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39871107 chr8:39871110 nonsynonymous SNV 0.018 0 24 hm5C_associated_SNPs_82812 0 0 0 3 39871090 39871111 mRNA hsa-miR-103 IDO2 miRanda miRanda
6670 chr8 39871110 39871110 1 + C T ESCA 39871107 + 39871087 39871127 41 GAAAGACAACCCAGCAATGCCTGCAGGGCTGATGTATGAAG GAAAGACAACCCAGCAATGCCTGTAGGGCTGATGTATGAAG < 41bp 0.732476550548716 0.513696845752256 0.12662244 0.1192694 prediction 0.43755940959292 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39871107 chr8:39871110 nonsynonymous SNV 0.018 0 24 hm5C_associated_SNPs_82812 0 0 0 3 39871090 39871111 mRNA hsa-miR-107 IDO2 miRanda miRanda
6671 chr8 39871110 39871110 1 + C T ESCA 39871107 + 39871087 39871127 41 GAAAGACAACCCAGCAATGCCTGCAGGGCTGATGTATGAAG GAAAGACAACCCAGCAATGCCTGTAGGGCTGATGTATGAAG < 41bp 0.732476550548716 0.513696845752256 0.12662244 0.1192694 prediction 0.43755940959292 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39871107 chr8:39871110 nonsynonymous SNV 0.018 0 24 hm5C_associated_SNPs_82812 0 0 0 3 39871109 39871129 mRNA hsa-miR-205 IDO2 miRanda miRanda
6672 chr19 14815883 14815883 1 + G T LUAD 14815881 + 14815861 14815901 41 GCCAGGGGCCGGGGCTGTTCCTGAGGATGCAGCTGGTGCCC GCCAGGGGCCGGGGCTGTTCCTTAGGATGCAGCTGGTGCCC < 41bp 0.818844088677975 0.600076981731046 0.87816286 0.39754698 prediction 0.437534213893858 Functional Loss - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14815881 chr19:14815883 stopgain 0.085 0 23 hm5C_associated_SNPs_82818 0 0 1 1 14815866 14815884 mRNA hsa-miR-873 ZNF333 miRanda miRanda
6673 chr1 95709799 95709799 1 + A T UCEC 95709795 + 95709775 95709815 41 GGGACCGTGTTCAGAATTCACACAAAAGCTGAAGGATTTAT GGGACCGTGTTCAGAATTCACACATAAGCTGAAGGATTTAT < 41bp 0.718756915385096 0.39081909480978 0.043409824 0.02678451 prediction 0.437513830770193 Functional Loss - RWDD3;TMEM56-RWDD3 ENSG00000122481;ENSG00000271092 CDS Human other chr1:95709795 chr1:95709799 stopgain 0.994 0 25 hm5C_associated_SNPs_82824 0 0 1 2 95709789 95709810 mRNA hsa-miR-205 RWDD3 miRanda miRanda
6674 chr1 95709799 95709799 1 + A T UCEC 95709795 + 95709775 95709815 41 GGGACCGTGTTCAGAATTCACACAAAAGCTGAAGGATTTAT GGGACCGTGTTCAGAATTCACACATAAGCTGAAGGATTTAT < 41bp 0.718756915385096 0.39081909480978 0.043409824 0.02678451 prediction 0.437513830770193 Functional Loss - RWDD3;TMEM56-RWDD3 ENSG00000122481;ENSG00000271092 CDS Human other chr1:95709795 chr1:95709799 stopgain 0.994 0 25 hm5C_associated_SNPs_82824 0 0 1 2 95709782 95709800 mRNA hsa-miR-599 RWDD3 miRanda miRanda
6675 chr10 99991401 99991401 1 + G A COAD 99991398 + 99991378 99991418 41 TTGAAATTTATGACTTTCCCCAAGAATTTCATACTGAAGAC TTGAAATTTATGACTTTCCCCAAAAATTTCATACTGAAGAC < 41bp 0.762350222465599 0.543631796212296 0.04042107 0.034058273 prediction 0.437436852506606 Functional Loss - R3HCC1L ENSG00000166024 CDS Human protein_coding chr10:99991398 chr10:99991401 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_82856 0 0 1 1 99991380 99991401 mRNA hsa-miR-491-5p C10orf28 miRanda miRanda
6676 chr12 51449947 51449947 1 + A C rs34441047 51449946 + 51449926 51449966 41 GATACAGCGTGGTACCCACCCAGCAATACATGATATCTTGG GATACAGCGTGGTACCCACCCCGCAATACATGATATCTTGG < 41bp 0.718716702232953 0.467239907099117 0.31257778 0.11318368 prediction 0.437433404465906 Functional Loss - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449946 chr12:51449947 synonymous SNV . 0 22 hm5C_associated_SNPs_82857 0 0 0 1 51449927 51449954 mRNA hsa-miR-137 LETMD1 miRanda miRanda
6677 chr12 51449948 51449948 1 + G T COAD 51449946 + 51449926 51449966 41 GATACAGCGTGGTACCCACCCAGCAATACATGATATCTTGG GATACAGCGTGGTACCCACCCATCAATACATGATATCTTGG < 41bp 0.718716702232953 0.386185627463903 0.31257778 0.11823261 prediction 0.437433404465906 Functional Loss - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449946 chr12:51449948 nonsynonymous SNV 0.295 0 23 hm5C_associated_SNPs_82858 0 0 0 1 51449927 51449954 mRNA hsa-miR-137 LETMD1 miRanda miRanda
6678 chr10 74886457 74886457 1 + C T UCEC 74886454 + 74886434 74886474 41 AAAGTGTGGAAGAGACCATCCGCCGAGAAGTTGCAGAAGAG AAAGTGTGGAAGAGACCATCCGCTGAGAAGTTGCAGAAGAG < 41bp 0.721660217684655 0.502946358319217 0.14249209 0.089674085 prediction 0.437427718730876 Functional Loss - NUDT13 ENSG00000166321 CDS Human protein_coding chr10:74886454 chr10:74886457 stopgain 0.190 1 24 hm5C_associated_SNPs_82861 0 0 1 1 74886449 74886472 mRNA hsa-miR-544 NUDT13 miRanda miRanda
6679 chr2 27259581 27259581 1 + G A UCEC 27259578 + 27259558 27259598 41 CTTTTACCCCTGCAGTGTGGCTGGGGATCATGCTGCCTGTG CTTTTACCCCTGCAGTGTGGCTGAGGATCATGCTGCCTGTG < 41bp 0.810715506515345 0.592009244101087 0.44403985 0.23181647 prediction 0.437412524828514 Functional Loss - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27259578 chr2:27259581 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_82871 0 0 1 2 27259573 27259594 mRNA hsa-miR-103 TMEM214 miRanda miRanda
6680 chr2 27259581 27259581 1 + G A UCEC 27259578 + 27259558 27259598 41 CTTTTACCCCTGCAGTGTGGCTGGGGATCATGCTGCCTGTG CTTTTACCCCTGCAGTGTGGCTGAGGATCATGCTGCCTGTG < 41bp 0.810715506515345 0.592009244101087 0.44403985 0.23181647 prediction 0.437412524828514 Functional Loss - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27259578 chr2:27259581 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_82871 0 0 1 2 27259573 27259594 mRNA hsa-miR-107 TMEM214 miRanda miRanda
6681 chr3 131068604 131068604 1 + T C rs566011714 131068603 + 131068583 131068623 41 CGATGGGAAAAGAACCTACTCTCCAGAACCATCTCTAGGCA CGATGGGAAAAGAACCTACTCCCCAGAACCATCTCTAGGCA < 41bp 0.718657375857041 0.470661948032231 0.9221663 0.108695894 prediction 0.437314751714082 Functional Loss - NEK11 ENSG00000114670 CDS Human protein_coding chr3:131068603 chr3:131068604 nonsynonymous SNV 0.262 1 22 hm5C_associated_SNPs_82900 0 0 0 1 131068585 131068607 mRNA hsa-miR-185 NEK11 miRanda miRanda
6682 chr7 89912361 89912361 1 + C T UCEC 89912358 + 89912338 89912378 41 TTTGTGAAAAGGGAACAATTCAGCAAATGATAGGTAAAATA TTTGTGAAAAGGGAACAATTCAGTAAATGATAGGTAAAATA < 41bp 0.745333679939705 0.52668529923921 0.20173106 0.10180792 prediction 0.43729676140099 Functional Loss - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89912358 chr7:89912361 stopgain 0.998 1 24 hm5C_associated_SNPs_82904 0 0 0 1 89912343 89912365 mRNA hsa-miR-450a C7orf63 miRanda miRanda
6683 chr9 84533469 84533469 1 + A C LUSC 84533468 + 84533448 84533488 41 AGTGGAAAGACCTTTCCTGTCACCAATGGGTCGAAGGAGAT AGTGGAAAGACCTTTCCTGTCCCCAATGGGTCGAAGGAGAT < 41bp 0.718630397090557 0.487138035758963 0.070169 0.11494428 prediction 0.437260794181113 Functional Loss - SPATA31D5P ENSG00000240632 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:84533468 chr9:84533469 . . 0 22 hm5C_associated_SNPs_82909 0 0 0 2 84533461 84533481 mRNA hsa-miR-551a FLJ43950 miRanda miRanda
6684 chr9 84533469 84533469 1 + A C LUSC 84533468 + 84533448 84533488 41 AGTGGAAAGACCTTTCCTGTCACCAATGGGTCGAAGGAGAT AGTGGAAAGACCTTTCCTGTCCCCAATGGGTCGAAGGAGAT < 41bp 0.718630397090557 0.487138035758963 0.070169 0.11494428 prediction 0.437260794181113 Functional Loss - SPATA31D5P ENSG00000240632 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:84533468 chr9:84533469 . . 0 22 hm5C_associated_SNPs_82909 0 0 0 2 84533461 84533481 mRNA hsa-miR-551b FLJ43950 miRanda miRanda
6685 chr22 19119087 19119087 1 - C T UCEC 19119090 - 19119070 19119110 41 AGTTGCCAGGATGTCCATCTCCCGAGGAAGGAATCTCTCCA AGTTGCCAGGATGTCCATCTCCCAAGGAAGGAATCTCTCCA < 41bp 0.734216506522991 0.515597485471916 0.95593226 0.46797803 prediction 0.437238042102151 Functional Loss - TSSK2 ENSG00000206203 CDS Human protein_coding chr22:19119090 chr22:19119087 nonsynonymous SNV 0.982 5 24 hm5C_associated_SNPs_82913 0 0 1 1 19119070 19119091 mRNA hsa-miR-185 DGCR14 miRanda miRanda
6686 chr3 36524539 36524539 1 + C T UCEC 36524537 + 36524517 36524557 41 CCTGTAAGATGAGCATCCACCACAAGTGCACAGATGGCCTG CCTGTAAGATGAGCATCCACCATAAGTGCACAGATGGCCTG < 41bp 0.862924350315189 0.644330938600306 0.40633446 0.1382255 prediction 0.437186823429767 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36524537 chr3:36524539 synonymous SNV . 0 23 hm5C_associated_SNPs_82934 0 0 0 1 36524536 36524559 mRNA hsa-miR-338-3p STAC miRanda miRanda
6687 chr2 234678246 234678246 1 + G A rs36059993 234678243 + 234678223 234678263 41 TCAGATGAGAGGAGACGGAACACGGGGACACACCAGCTTGA TCAGATGAGAGGAGACGGAACACAGGGACACACCAGCTTGA < 41bp 0.7325029067847 0.514013579433548 0.8761841 0.23226109 prediction 0.436978654702304 Functional Loss - UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 ENSG00000167165;ENSG00000241635;ENSG00000242515;ENSG00000244474 UTR3 Human other chr2:234678243 chr2:234678246 . . 0 24 hm5C_associated_SNPs_82994 0 0 0 7 234678239 234678260 mRNA hsa-miR-138 UGT1A7 miRanda miRanda
6688 chr2 234678246 234678246 1 + G A rs36059993 234678243 + 234678223 234678263 41 TCAGATGAGAGGAGACGGAACACGGGGACACACCAGCTTGA TCAGATGAGAGGAGACGGAACACAGGGACACACCAGCTTGA < 41bp 0.7325029067847 0.514013579433548 0.8761841 0.23226109 prediction 0.436978654702304 Functional Loss - UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 ENSG00000167165;ENSG00000241635;ENSG00000242515;ENSG00000244474 UTR3 Human other chr2:234678243 chr2:234678246 . . 0 24 hm5C_associated_SNPs_82994 0 0 0 7 234678239 234678260 mRNA hsa-miR-138 UGT1A8 miRanda miRanda
6689 chr2 234678246 234678246 1 + G A rs36059993 234678243 + 234678223 234678263 41 TCAGATGAGAGGAGACGGAACACGGGGACACACCAGCTTGA TCAGATGAGAGGAGACGGAACACAGGGACACACCAGCTTGA < 41bp 0.7325029067847 0.514013579433548 0.8761841 0.23226109 prediction 0.436978654702304 Functional Loss - UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 ENSG00000167165;ENSG00000241635;ENSG00000242515;ENSG00000244474 UTR3 Human other chr2:234678243 chr2:234678246 . . 0 24 hm5C_associated_SNPs_82994 0 0 0 7 234678239 234678260 mRNA hsa-miR-138 UGT1A5 miRanda miRanda
6690 chr2 234678246 234678246 1 + G A rs36059993 234678243 + 234678223 234678263 41 TCAGATGAGAGGAGACGGAACACGGGGACACACCAGCTTGA TCAGATGAGAGGAGACGGAACACAGGGACACACCAGCTTGA < 41bp 0.7325029067847 0.514013579433548 0.8761841 0.23226109 prediction 0.436978654702304 Functional Loss - UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 ENSG00000167165;ENSG00000241635;ENSG00000242515;ENSG00000244474 UTR3 Human other chr2:234678243 chr2:234678246 . . 0 24 hm5C_associated_SNPs_82994 0 0 0 7 234678239 234678260 mRNA hsa-miR-138 UGT1A4 miRanda miRanda
6691 chr2 234678246 234678246 1 + G A rs36059993 234678243 + 234678223 234678263 41 TCAGATGAGAGGAGACGGAACACGGGGACACACCAGCTTGA TCAGATGAGAGGAGACGGAACACAGGGACACACCAGCTTGA < 41bp 0.7325029067847 0.514013579433548 0.8761841 0.23226109 prediction 0.436978654702304 Functional Loss - UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 ENSG00000167165;ENSG00000241635;ENSG00000242515;ENSG00000244474 UTR3 Human other chr2:234678243 chr2:234678246 . . 0 24 hm5C_associated_SNPs_82994 0 0 0 7 234678239 234678260 mRNA hsa-miR-138 UGT1A6 miRanda miRanda
6692 chr2 234678246 234678246 1 + G A rs36059993 234678243 + 234678223 234678263 41 TCAGATGAGAGGAGACGGAACACGGGGACACACCAGCTTGA TCAGATGAGAGGAGACGGAACACAGGGACACACCAGCTTGA < 41bp 0.7325029067847 0.514013579433548 0.8761841 0.23226109 prediction 0.436978654702304 Functional Loss - UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 ENSG00000167165;ENSG00000241635;ENSG00000242515;ENSG00000244474 UTR3 Human other chr2:234678243 chr2:234678246 . . 0 24 hm5C_associated_SNPs_82994 0 0 0 7 234678239 234678260 mRNA hsa-miR-138 UGT1A1 miRanda miRanda
6693 chr2 234678246 234678246 1 + G A rs36059993 234678243 + 234678223 234678263 41 TCAGATGAGAGGAGACGGAACACGGGGACACACCAGCTTGA TCAGATGAGAGGAGACGGAACACAGGGACACACCAGCTTGA < 41bp 0.7325029067847 0.514013579433548 0.8761841 0.23226109 prediction 0.436978654702304 Functional Loss - UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 ENSG00000167165;ENSG00000241635;ENSG00000242515;ENSG00000244474 UTR3 Human other chr2:234678243 chr2:234678246 . . 0 24 hm5C_associated_SNPs_82994 0 0 0 7 234678239 234678260 mRNA hsa-miR-138 UGT1A10 miRanda miRanda
6694 chr1 150116999 150116999 1 + G T SARC 150116997 + 150116977 150117017 41 CGGTGGTTGGGGGAAGGGCACAGCTTCCTCTCTTGTCCCCA CGGTGGTTGGGGGAAGGGCACATCTTCCTCTCTTGTCCCCA < 41bp 0.718470759913072 0.376325113743328 0.21124592 0.114872634 prediction 0.436941519826143 Functional Loss - VPS45 ENSG00000136631 CDS Human protein_coding chr1:150116997 chr1:150116999 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_83004 0 0 0 1 150116998 150117019 mRNA hsa-miR-491-5p VPS45 miRanda miRanda
6695 chr2 27016113 27016113 1 + G A LGG 27016110 + 27016090 27016130 41 CCCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCCTTG CCCAAAGGATGTGCAACTGGCCCAGAGGATCCGGGGCCTTG < 41bp 0.718458277522344 0.477430742614594 0.45103487 0.2801103 prediction 0.436916555044688 Functional Loss - CENPA ENSG00000115163 CDS Human protein_coding chr2:27016110 chr2:27016113 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_83013 0 0 1 1 27016103 27016123 mRNA hsa-miR-127-3p CENPA miRanda miRanda
6696 chr2 27016112 27016112 1 + C T LUAD 27016110 + 27016090 27016130 41 CCCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCCTTG CCCAAAGGATGTGCAACTGGCCTGGAGGATCCGGGGCCTTG < 41bp 0.718458277522344 0.450025200626152 0.45103487 0.29294795 prediction 0.436916555044688 Functional Loss - CENPA ENSG00000115163 CDS Human protein_coding chr2:27016110 chr2:27016112 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_83014 0 0 1 1 27016103 27016123 mRNA hsa-miR-127-3p CENPA miRanda miRanda
6697 chr8 8093397 8093397 1 + G A rs143149047 8093394 + 8093374 8093414 41 GCCATCATCTCCCACAGCACCACGGGTCTGGTCACATGGGA GCCATCATCTCCCACAGCACCACAGGTCTGGTCACATGGGA < 41bp 0.718433831303849 0.491985100324072 0.33365428 0.22371173 prediction 0.436867662607698 Functional Loss - FAM86B3P ENSG00000173295 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr8:8093394 chr8:8093397 . . 0 24 hm5C_associated_SNPs_83031 0 0 1 2 8093396 8093418 mRNA hsa-miR-324-5p FLJ10661 miRanda miRanda
6698 chr8 8093397 8093397 1 + G A rs143149047 8093394 + 8093374 8093414 41 GCCATCATCTCCCACAGCACCACGGGTCTGGTCACATGGGA GCCATCATCTCCCACAGCACCACAGGTCTGGTCACATGGGA < 41bp 0.718433831303849 0.491985100324072 0.33365428 0.22371173 prediction 0.436867662607698 Functional Loss - FAM86B3P ENSG00000173295 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr8:8093394 chr8:8093397 . . 0 24 hm5C_associated_SNPs_83031 0 0 1 2 8093379 8093402 mRNA hsa-miR-504 FLJ10661 miRanda miRanda
6699 chr7 2420210 2420210 1 + G T rs76427867 2420208 + 2420188 2420228 41 GTTTCCACGGTGCCTGTACACAGCCGAGCAGCATTTCCGTT GTTTCCACGGTGCCTGTACACATCCGAGCAGCATTTCCGTT < 41bp 0.718392685479 0.407803211101849 0.40274164 0.25174823 prediction 0.436785370958 Functional Loss - EIF3B ENSG00000106263 UTR3 Human protein_coding chr7:2420208 chr7:2420210 . . 0 23 hm5C_associated_SNPs_83063 0 0 1 1 2420207 2420229 mRNA hsa-miR-191 EIF3B miRanda miRanda
6700 chr17 15931049 15931049 1 + G T rs115686307 15931047 + 15931027 15931067 41 CCCAACTGATTATGACCTTTCAGGATGTCGTCAAGTGATGC CCCAACTGATTATGACCTTTCATGATGTCGTCAAGTGATGC < 41bp 0.718254469378996 0.386342116127034 0.70390075 0.21233216 prediction 0.436508938757992 Functional Loss - TTC19 ENSG00000011295 UTR3 Human protein_coding chr17:15931047 chr17:15931049 . . 0 23 hm5C_associated_SNPs_83145 0 0 1 1 15931026 15931049 mRNA hsa-miR-488 TTC19 miRanda miRanda
6701 chr3 179322615 179322615 1 + G A STAD 179322612 + 179322592 179322632 41 CCCGTAGTAGCCATGGCGGCCATGAGTTTGTTGCGGCGGGT CCCGTAGTAGCCATGGCGGCCATAAGTTTGTTGCGGCGGGT < 41bp 0.718148434866064 0.494414702889168 0.42680883 0.3031611 prediction 0.436296869732128 Functional Loss - NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179322612 chr3:179322615 nonsynonymous SNV 0.702 4 24 hm5C_associated_SNPs_83221 0 0 1 1 179322600 179322624 mRNA hsa-miR-495 NDUFB5 miRanda miRanda
6702 chr10 71025391 71025391 1 + T C LIHC 71025390 + 71025370 71025410 41 GGATTCTGCAGCAGCTGGGCCTGGACAGCACGTGTGAGGAC GGATTCTGCAGCAGCTGGGCCCGGACAGCACGTGTGAGGAC < 41bp 0.807226634856575 0.589086516753016 0.07024875 0.037402302 prediction 0.436280236207118 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71025390 chr10:71025391 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_83230 0 0 0 1 71025386 71025408 mRNA hsa-miR-342-3p HKDC1 miRanda miRanda
6703 chr17 10614344 10614344 1 + A T LUAD 10614340 + 10614320 10614360 41 AGAAGGAGTTATTGAAACAGCTCCAGACAGCCAAGCCTTTG AGAAGGAGTTATTGAAACAGCTCCTGACAGCCAAGCCTTTG < 41bp 0.905314674396209 0.687187360530271 0.41777968 0.10683337 prediction 0.436254627731876 Functional Loss - ADPRM ENSG00000170222 CDS Human protein_coding chr17:10614340 chr17:10614344 synonymous SNV . 0 25 hm5C_associated_SNPs_83238 0 0 0 1 10614322 10614344 mRNA hsa-miR-122 C17orf48 miRanda miRanda
6704 chr2 70121125 70121125 1 + C T THCA 70121123 + 70121103 70121143 41 AAGCGGGACTCCAAATGGGTCGCAGTCGCAGCCGCTCTCCA AAGCGGGACTCCAAATGGGTCGTAGTCGCAGCCGCTCTCCA < 41bp 0.718083591416638 0.484190261554581 0.19771013 0.3024422 prediction 0.436167182833277 Functional Loss - SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70121123 chr2:70121125 synonymous SNV . 0 23 hm5C_associated_SNPs_83276 0 0 1 2 70121105 70121125 mRNA hsa-miR-551a SNRNP27 miRanda miRanda
6705 chr2 70121125 70121125 1 + C T THCA 70121123 + 70121103 70121143 41 AAGCGGGACTCCAAATGGGTCGCAGTCGCAGCCGCTCTCCA AAGCGGGACTCCAAATGGGTCGTAGTCGCAGCCGCTCTCCA < 41bp 0.718083591416638 0.484190261554581 0.19771013 0.3024422 prediction 0.436167182833277 Functional Loss - SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70121123 chr2:70121125 synonymous SNV . 0 23 hm5C_associated_SNPs_83276 0 0 1 2 70121107 70121125 mRNA hsa-miR-551b SNRNP27 miRanda miRanda
6706 chr1 25757646 25757646 1 + G A rs369738026 25757643 + 25757623 25757663 41 CGCCGCCCCCTAAAGCGGAACCGGATCACCGAGGGCATTTA CGCCGCCCCCTAAAGCGGAACCGAATCACCGAGGGCATTTA < 41bp 0.717923359749996 0.484249349980994 0.46937028 0.15355438 prediction 0.435846719499993 Functional Loss - TMEM57 ENSG00000204178 CDS Human protein_coding chr1:25757643 chr1:25757646 synonymous SNV . 0 24 hm5C_associated_SNPs_83382 0 0 1 1 25757641 25757662 mRNA hsa-miR-365 TMEM57 miRanda miRanda
6707 chr19 56572960 56572960 1 + G C rs117723733 56572956 + 56572936 56572976 41 AACTTTAAACGCTGTTTTCTCAGAGCAAGCTATGCACCTGG AACTTTAAACGCTGTTTTCTCAGACCAAGCTATGCACCTGG < 41bp 0.717913915682922 0.420725274471155 0.94255817 0.91979074 prediction 0.435827831365843 Functional Loss - NLRP5 ENSG00000171487 UTR3 Human protein_coding chr19:56572956 chr19:56572960 . . 0 25 hm5C_associated_SNPs_83389 0 0 0 1 56572951 56572972 mRNA hsa-miR-153 NLRP5 miRanda miRanda
6708 chrX 106893651 106893651 1 + G A rs5962870 106893648 + 106893628 106893668 41 AACTAGCAACAAAGGCAACCCATGTGTGACCAGTTCTCCCC AACTAGCAACAAAGGCAACCCATATGTGACCAGTTCTCCCC < 41bp 0.763088490380165 0.545214629585036 0.102957785 0.13132563 prediction 0.435747721590257 Functional Loss - PRPS1 ENSG00000147224 UTR3 Human protein_coding chrX:106893648 chrX:106893651 . . 0 24 hm5C_associated_SNPs_83419 0 0 1 3 106893644 106893666 mRNA hsa-miR-146a PRPS1 miRanda miRanda
6709 chrX 106893651 106893651 1 + G A rs5962870 106893648 + 106893628 106893668 41 AACTAGCAACAAAGGCAACCCATGTGTGACCAGTTCTCCCC AACTAGCAACAAAGGCAACCCATATGTGACCAGTTCTCCCC < 41bp 0.763088490380165 0.545214629585036 0.102957785 0.13132563 prediction 0.435747721590257 Functional Loss - PRPS1 ENSG00000147224 UTR3 Human protein_coding chrX:106893648 chrX:106893651 . . 0 24 hm5C_associated_SNPs_83419 0 0 1 3 106893636 106893657 mRNA hsa-miR-377 PRPS1 miRanda miRanda
6710 chrX 106893651 106893651 1 + G A rs5962870 106893648 + 106893628 106893668 41 AACTAGCAACAAAGGCAACCCATGTGTGACCAGTTCTCCCC AACTAGCAACAAAGGCAACCCATATGTGACCAGTTCTCCCC < 41bp 0.763088490380165 0.545214629585036 0.102957785 0.13132563 prediction 0.435747721590257 Functional Loss - PRPS1 ENSG00000147224 UTR3 Human protein_coding chrX:106893648 chrX:106893651 . . 0 24 hm5C_associated_SNPs_83419 0 0 1 3 106893644 106893666 mRNA hsa-miR-146b-5p PRPS1 miRanda miRanda
6711 chr11 607498 607498 1 + G T UCEC 607496 + 607476 607516 41 ACAGACATCTCTGAGCTACCCAGGATACCAAAGATCAGGAG ACAGACATCTCTGAGCTACCCATGATACCAAAGATCAGGAG < 41bp 0.908599671723455 0.690759285750784 0.84645605 0.16101623 prediction 0.435680771945342 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:607496 chr11:607498 nonsynonymous SNV 0.989 5 23 hm5C_associated_SNPs_83446 0 0 1 1 607489 607509 mRNA hsa-miR-9 PHRF1 miRanda miRanda
6712 chr6 97489422 97489422 1 + G A BLCA 97489419 + 97489399 97489439 41 GAGCTGATGAGGTTAATTTGCACGGTGTGACCAGCCTTGGC GAGCTGATGAGGTTAATTTGCACAGTGTGACCAGCCTTGGC < 41bp 0.775765315170366 0.557945285063641 0.31346065 0.054102182 prediction 0.435640060213451 Functional Loss - KLHL32 ENSG00000186231 CDS Human protein_coding chr6:97489419 chr6:97489422 nonsynonymous SNV 0.676 4 24 hm5C_associated_SNPs_83457 0 0 0 2 97489401 97489422 mRNA hsa-miR-19a KLHL32 miRanda miRanda
6713 chr6 97489422 97489422 1 + G A BLCA 97489419 + 97489399 97489439 41 GAGCTGATGAGGTTAATTTGCACGGTGTGACCAGCCTTGGC GAGCTGATGAGGTTAATTTGCACAGTGTGACCAGCCTTGGC < 41bp 0.775765315170366 0.557945285063641 0.31346065 0.054102182 prediction 0.435640060213451 Functional Loss - KLHL32 ENSG00000186231 CDS Human protein_coding chr6:97489419 chr6:97489422 nonsynonymous SNV 0.676 4 24 hm5C_associated_SNPs_83457 0 0 0 2 97489400 97489422 mRNA hsa-miR-19b KLHL32 miRanda miRanda
6714 chr11 120099898 120099898 1 + A C rs558727338 120099897 + 120099877 120099917 41 GCTCTGGGCCCACTGCTCTTCACCAGCCACTAGAGGGGGTG GCTCTGGGCCCACTGCTCTTCCCCAGCCACTAGAGGGGGTG < 41bp 0.806285557313832 0.588489342123534 0.331682 0.22990322 prediction 0.435592430380597 Functional Loss - OAF ENSG00000184232 UTR3 Human protein_coding chr11:120099897 chr11:120099898 . . 0 22 hm5C_associated_SNPs_83477 0 0 1 1 120099882 120099904 mRNA hsa-miR-138 OAF miRanda miRanda
6715 chr14 74665653 74665653 1 + C T LUAD 74665651 + 74665631 74665671 41 AGATGACACGGGGGAAATTCCTCAATATTCTAGAGAAGCCC AGATGACACGGGGGAAATTCCTTAATATTCTAGAGAAGCCC < 41bp 0.717789993577756 0.433189997359074 0.29831845 0.060721874 prediction 0.435579987155511 Functional Loss - LIN52 ENSG00000205659 CDS Human protein_coding chr14:74665651 chr14:74665653 synonymous SNV . 0 23 hm5C_associated_SNPs_83487 0 0 1 1 74665647 74665668 mRNA hsa-miR-384 LIN52 miRanda miRanda
6716 chr20 36488339 36488339 1 + C T STAD 36488336 + 36488316 36488356 41 GGAGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCT GGAGAGATCATCGACAATGACACTGAGGAGGAGTTCTACCT < 41bp 0.732510562379683 0.514763654090473 0.25261003 0.2355642 prediction 0.435493816578421 Functional Loss - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488336 chr20:36488339 synonymous SNV . 0 24 hm5C_associated_SNPs_83527 0 0 1 6 36488337 36488358 mRNA hsa-let-7a CTNNBL1 miRanda miRanda
6717 chr20 36488339 36488339 1 + C T STAD 36488336 + 36488316 36488356 41 GGAGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCT GGAGAGATCATCGACAATGACACTGAGGAGGAGTTCTACCT < 41bp 0.732510562379683 0.514763654090473 0.25261003 0.2355642 prediction 0.435493816578421 Functional Loss - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488336 chr20:36488339 synonymous SNV . 0 24 hm5C_associated_SNPs_83527 0 0 1 6 36488337 36488358 mRNA hsa-let-7b CTNNBL1 miRanda miRanda
6718 chr20 36488339 36488339 1 + C T STAD 36488336 + 36488316 36488356 41 GGAGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCT GGAGAGATCATCGACAATGACACTGAGGAGGAGTTCTACCT < 41bp 0.732510562379683 0.514763654090473 0.25261003 0.2355642 prediction 0.435493816578421 Functional Loss - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488336 chr20:36488339 synonymous SNV . 0 24 hm5C_associated_SNPs_83527 0 0 1 6 36488337 36488358 mRNA hsa-let-7c CTNNBL1 miRanda miRanda
6719 chr20 36488339 36488339 1 + C T STAD 36488336 + 36488316 36488356 41 GGAGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCT GGAGAGATCATCGACAATGACACTGAGGAGGAGTTCTACCT < 41bp 0.732510562379683 0.514763654090473 0.25261003 0.2355642 prediction 0.435493816578421 Functional Loss - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488336 chr20:36488339 synonymous SNV . 0 24 hm5C_associated_SNPs_83527 0 0 1 6 36488337 36488358 mRNA hsa-let-7d CTNNBL1 miRanda miRanda
6720 chr20 36488339 36488339 1 + C T STAD 36488336 + 36488316 36488356 41 GGAGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCT GGAGAGATCATCGACAATGACACTGAGGAGGAGTTCTACCT < 41bp 0.732510562379683 0.514763654090473 0.25261003 0.2355642 prediction 0.435493816578421 Functional Loss - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488336 chr20:36488339 synonymous SNV . 0 24 hm5C_associated_SNPs_83527 0 0 1 6 36488337 36488358 mRNA hsa-let-7e CTNNBL1 miRanda miRanda
6721 chr20 36488339 36488339 1 + C T STAD 36488336 + 36488316 36488356 41 GGAGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCT GGAGAGATCATCGACAATGACACTGAGGAGGAGTTCTACCT < 41bp 0.732510562379683 0.514763654090473 0.25261003 0.2355642 prediction 0.435493816578421 Functional Loss - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488336 chr20:36488339 synonymous SNV . 0 24 hm5C_associated_SNPs_83527 0 0 1 6 36488337 36488358 mRNA hsa-let-7f CTNNBL1 miRanda miRanda
6722 chr14 23946430 23946430 1 + G A BLCA 23946427 + 23946407 23946447 41 AGGATTAACTATGAGGAGAGCATGATGGTGCGTTTGAGCGT AGGATTAACTATGAGGAGAGCATAATGGTGCGTTTGAGCGT < 41bp 0.717741927390516 0.477948322294479 0.11976862 0.107463986 prediction 0.435483854781033 Functional Loss - NGDN ENSG00000129460 CDS Human protein_coding chr14:23946427 chr14:23946430 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_83531 0 0 1 1 23946426 23946445 mRNA hsa-miR-371-5p NGDN miRanda miRanda
6723 chr16 56670809 56670809 1 + G C LUSC 56670805 + 56670785 56670825 41 TGGGCTGAGCCAAGTGTGCCCACGGCTGCATCTGCAAAGGG TGGGCTGAGCCAAGTGTGCCCACGCCTGCATCTGCAAAGGG < 41bp 0.717722350582049 0.427312019167838 0.4856287 0.23284665 prediction 0.435444701164099 Functional Loss - MT1JP ENSG00000255986 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:56670805 chr16:56670809 . . 0 25 hm5C_associated_SNPs_83551 0 0 0 1 56670801 56670823 mRNA hsa-miR-450a MT1JP miRanda miRanda
6724 chr16 56670808 56670808 1 + G T LUSC 56670805 + 56670785 56670825 41 TGGGCTGAGCCAAGTGTGCCCACGGCTGCATCTGCAAAGGG TGGGCTGAGCCAAGTGTGCCCACTGCTGCATCTGCAAAGGG < 41bp 0.717722350582049 0.329612368540637 0.4856287 0.31907302 prediction 0.435444701164099 Functional Loss - MT1JP ENSG00000255986 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:56670805 chr16:56670808 . . 0 24 hm5C_associated_SNPs_83552 0 0 0 1 56670801 56670823 mRNA hsa-miR-450a MT1JP miRanda miRanda
6725 chrX 148798492 148798492 1 + G A rs73606281 148798489 + 148798469 148798509 41 AAATGGGCCAATGCATGCTTCAGGGCCACACCCAGCAGTTT AAATGGGCCAATGCATGCTTCAGAGCCACACCCAGCAGTTT < 41bp 0.807617251121287 0.589898820879389 0.91444564 0.85677457 prediction 0.435436860483797 Functional Loss - MAGEA11 ENSG00000185247 UTR3 Human protein_coding chrX:148798489 chrX:148798492 . . 0 24 hm5C_associated_SNPs_83555 0 0 0 1 148798479 148798505 mRNA hsa-miR-138 MAGEA11 miRanda miRanda
6726 chr12 32520655 32520655 1 + G A SKCM 32520652 + 32520632 32520672 41 GCCACAGTGCTCACAACTAGCCGGGAGGCAAGACTGCCCAA GCCACAGTGCTCACAACTAGCCGAGAGGCAAGACTGCCCAA < 41bp 0.791511964076026 0.573854885826559 0.8909303 0.53560424 prediction 0.435314156498934 Functional Loss - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32520652 chr12:32520655 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_83598 0 0 0 2 32520653 32520679 mRNA hsa-miR-139-5p BICD1 miRanda miRanda
6727 chr12 32520655 32520655 1 + G A SKCM 32520652 + 32520632 32520672 41 GCCACAGTGCTCACAACTAGCCGGGAGGCAAGACTGCCCAA GCCACAGTGCTCACAACTAGCCGAGAGGCAAGACTGCCCAA < 41bp 0.791511964076026 0.573854885826559 0.8909303 0.53560424 prediction 0.435314156498934 Functional Loss - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32520652 chr12:32520655 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_83598 0 0 0 2 32520652 32520666 mRNA hsa-miR-431 BICD1 miRanda miRanda
6728 chr4 1326633 1326633 1 + A T BLCA 1326629 + 1326609 1326649 41 GGCATGCTGGCCTTCCCGCCCGACACGCACATCTCCCCGTA GGCATGCTGGCCTTCCCGCCCGACTCGCACATCTCCCCGTA < 41bp 0.896921791563777 0.679308870898518 0.022148758 0.018068254 prediction 0.435225841330518 Functional Loss - MAEA ENSG00000090316 CDS Human protein_coding chr4:1326629 chr4:1326633 nonsynonymous SNV 0.949 1 25 hm5C_associated_SNPs_83625 0 0 0 1 1326620 1326640 mRNA hsa-miR-210 MAEA miRanda miRanda
6729 chr15 74468969 74468969 1 + G T rs553448603 74468966 + 74468946 74468986 41 GAGGCTCCCTGGGGCCTGCTCAAGCTCCTCCTGCTCCTTGC GAGGCTCCCTGGGGCCTGCTCAATCTCCTCCTGCTCCTTGC < 41bp 0.717612459025717 0.34993684267109 0.8832469 0.7760099 prediction 0.435224918051434 Functional Loss - ISLR ENSG00000261543 ncRNA_intronic Human antisense chr15:74468966 chr15:74468969 . . 0 24 hm5C_associated_SNPs_83626 0 0 1 2 74468952 74468975 mRNA hsa-miR-28-5p ISLR miRanda miRanda
6730 chr15 74468969 74468969 1 + G T rs553448603 74468966 + 74468946 74468986 41 GAGGCTCCCTGGGGCCTGCTCAAGCTCCTCCTGCTCCTTGC GAGGCTCCCTGGGGCCTGCTCAATCTCCTCCTGCTCCTTGC < 41bp 0.717612459025717 0.34993684267109 0.8832469 0.7760099 prediction 0.435224918051434 Functional Loss - ISLR ENSG00000261543 ncRNA_intronic Human antisense chr15:74468966 chr15:74468969 . . 0 24 hm5C_associated_SNPs_83626 0 0 1 2 74468953 74468975 mRNA hsa-miR-708 ISLR miRanda miRanda
6731 chr21 41034041 41034041 1 + G A rs73360151 41034038 + 41034018 41034058 41 GATTGAGTCCATGTTATCGGCTCGGTACTCAACACAACCCA GATTGAGTCCATGTTATCGGCTCAGTACTCAACACAACCCA < 41bp 0.754932968024332 0.537335199506339 0.018483609 0.013810486 prediction 0.435195537035986 Functional Loss - B3GALT5 ENSG00000225330 ncRNA_intronic Human sense_overlapping chr21:41034038 chr21:41034041 . . 0 24 hm5C_associated_SNPs_83636 0 0 0 1 41034022 41034043 mRNA hsa-miR-615-3p B3GALT5 miRanda miRanda
6732 chr2 101611898 101611898 1 + G A SKCM 101611895 + 101611875 101611915 41 CCTCTTTGCACAGTGAGCAGCAGGACTCGCTACTTCTCTCC CCTCTTTGCACAGTGAGCAGCAGAACTCGCTACTTCTCTCC < 41bp 0.771992326593443 0.554489714753357 0.7860867 0.64745444 prediction 0.435005223680172 Functional Loss - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101611895 chr2:101611898 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_83702 0 0 1 2 101611894 101611916 mRNA hsa-miR-185 NPAS2 miRanda miRanda
6733 chr2 101611898 101611898 1 + G A SKCM 101611895 + 101611875 101611915 41 CCTCTTTGCACAGTGAGCAGCAGGACTCGCTACTTCTCTCC CCTCTTTGCACAGTGAGCAGCAGAACTCGCTACTTCTCTCC < 41bp 0.771992326593443 0.554489714753357 0.7860867 0.64745444 prediction 0.435005223680172 Functional Loss - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101611895 chr2:101611898 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_83702 0 0 1 2 101611891 101611899 mRNA hsa-miR-370 NPAS2 miRanda miRanda
6734 chrX 74494117 74494117 1 + T C UCEC 74494116 + 74494096 74494136 41 ACGGAGTTACAGTGTCCGGACTCCATGCCCTGTCACAACCA ACGGAGTTACAGTGTCCGGACCCCATGCCCTGTCACAACCA < 41bp 0.817144479501218 0.599684884374896 0.93590343 0.0616737 prediction 0.434919190252644 Functional Loss - UPRT ENSG00000094841 CDS Human protein_coding chrX:74494116 chrX:74494117 nonsynonymous SNV 0.947 0 22 hm5C_associated_SNPs_83730 0 0 1 2 74494108 74494132 mRNA hsa-miR-542-3p UPRT miRanda miRanda
6735 chrX 74494117 74494117 1 + T C UCEC 74494116 + 74494096 74494136 41 ACGGAGTTACAGTGTCCGGACTCCATGCCCTGTCACAACCA ACGGAGTTACAGTGTCCGGACCCCATGCCCTGTCACAACCA < 41bp 0.817144479501218 0.599684884374896 0.93590343 0.0616737 prediction 0.434919190252644 Functional Loss - UPRT ENSG00000094841 CDS Human protein_coding chrX:74494116 chrX:74494117 nonsynonymous SNV 0.947 0 22 hm5C_associated_SNPs_83730 0 0 1 2 74494113 74494134 mRNA hsa-miR-758 UPRT miRanda miRanda
6736 chr19 36640769 36640769 1 + T C rs14100 36640768 + 36640748 36640788 41 GCCCCAGACCCGCCCCCTCACTGCCTTGCTATAGGAGTCAC GCCCCAGACCCGCCCCCTCACCGCCTTGCTATAGGAGTCAC < 41bp 0.717389515108003 0.490712780684312 0.10349867 0.13909808 prediction 0.434779030216006 Functional Loss - CAPNS1 ENSG00000126247 UTR3 Human protein_coding chr19:36640768 chr19:36640769 . . 0 22 hm5C_associated_SNPs_83777 0 0 1 4 36640752 36640773 mRNA hsa-miR-34a CAPNS1 miRanda miRanda
6737 chr19 36640769 36640769 1 + T C rs14100 36640768 + 36640748 36640788 41 GCCCCAGACCCGCCCCCTCACTGCCTTGCTATAGGAGTCAC GCCCCAGACCCGCCCCCTCACCGCCTTGCTATAGGAGTCAC < 41bp 0.717389515108003 0.490712780684312 0.10349867 0.13909808 prediction 0.434779030216006 Functional Loss - CAPNS1 ENSG00000126247 UTR3 Human protein_coding chr19:36640768 chr19:36640769 . . 0 22 hm5C_associated_SNPs_83777 0 0 1 4 36640752 36640773 mRNA hsa-miR-34c-5p CAPNS1 miRanda miRanda
6738 chr19 36640769 36640769 1 + T C rs14100 36640768 + 36640748 36640788 41 GCCCCAGACCCGCCCCCTCACTGCCTTGCTATAGGAGTCAC GCCCCAGACCCGCCCCCTCACCGCCTTGCTATAGGAGTCAC < 41bp 0.717389515108003 0.490712780684312 0.10349867 0.13909808 prediction 0.434779030216006 Functional Loss - CAPNS1 ENSG00000126247 UTR3 Human protein_coding chr19:36640768 chr19:36640769 . . 0 22 hm5C_associated_SNPs_83777 0 0 1 4 36640752 36640773 mRNA hsa-miR-449a CAPNS1 miRanda miRanda
6739 chr19 36640769 36640769 1 + T C rs14100 36640768 + 36640748 36640788 41 GCCCCAGACCCGCCCCCTCACTGCCTTGCTATAGGAGTCAC GCCCCAGACCCGCCCCCTCACCGCCTTGCTATAGGAGTCAC < 41bp 0.717389515108003 0.490712780684312 0.10349867 0.13909808 prediction 0.434779030216006 Functional Loss - CAPNS1 ENSG00000126247 UTR3 Human protein_coding chr19:36640768 chr19:36640769 . . 0 22 hm5C_associated_SNPs_83777 0 0 1 4 36640752 36640773 mRNA hsa-miR-449b CAPNS1 miRanda miRanda
6740 chr2 157407157 157407157 1 + G A STAD 157407154 + 157407134 157407174 41 GCCAAATGTGTTATCAATGCCACGGGACCTTTCACGGACTC GCCAAATGTGTTATCAATGCCACAGGACCTTTCACGGACTC < 41bp 0.767121852938346 0.5497486646706 0.12724358 0.15128896 prediction 0.434746376535493 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407154 chr2:157407157 synonymous SNV . 0 24 hm5C_associated_SNPs_83790 0 0 1 1 157407151 157407168 mRNA hsa-miR-488 GPD2 miRanda miRanda
6741 chr1 153005062 153005062 1 + C T SKCM 153005060 + 153005040 153005080 41 CCCTTCAATAGTCACTCCAGCACCAGCCCAGCAGAAGACCA CCCTTCAATAGTCACTCCAGCATCAGCCCAGCAGAAGACCA < 41bp 0.803468941961078 0.586095788105657 0.08224833 0.09326962 prediction 0.434746307710842 Functional Loss - SPRR1B ENSG00000169469 CDS Human protein_coding chr1:153005060 chr1:153005062 nonsynonymous SNV 0.368 2 23 hm5C_associated_SNPs_83791 0 0 0 2 153005046 153005067 mRNA hsa-miR-138 SPRR1B miRanda miRanda
6742 chr1 153005062 153005062 1 + C T SKCM 153005060 + 153005040 153005080 41 CCCTTCAATAGTCACTCCAGCACCAGCCCAGCAGAAGACCA CCCTTCAATAGTCACTCCAGCATCAGCCCAGCAGAAGACCA < 41bp 0.803468941961078 0.586095788105657 0.08224833 0.09326962 prediction 0.434746307710842 Functional Loss - SPRR1B ENSG00000169469 CDS Human protein_coding chr1:153005060 chr1:153005062 nonsynonymous SNV 0.368 2 23 hm5C_associated_SNPs_83791 0 0 0 2 153005052 153005074 mRNA hsa-miR-330-5p SPRR1B miRanda miRanda
6743 chr2 27016122 27016122 1 + G T LUAD 27016120 + 27016100 27016140 41 GTGCAACTGGCCCGGAGGATCCGGGGCCTTGAGGAGGGACT GTGCAACTGGCCCGGAGGATCCTGGGCCTTGAGGAGGGACT < 41bp 0.717332563289242 0.352720973066032 0.9062766 0.24390376 prediction 0.434665126578485 Functional Loss - CENPA ENSG00000115163 CDS Human protein_coding chr2:27016120 chr2:27016122 nonsynonymous SNV 0.841 4 23 hm5C_associated_SNPs_83825 0 0 1 1 27016103 27016123 mRNA hsa-miR-127-3p CENPA miRanda miRanda
6744 chr17 38173543 38173543 1 + G A rs182753686 38173540 + 38173520 38173560 41 CTTGAGAGTATCAGGTCTCCCACGTGGGAGACAAGAAATCC CTTGAGAGTATCAGGTCTCCCACATGGGAGACAAGAAATCC < 41bp 0.745076975341323 0.527800098635943 0.05525267 0.034318864 prediction 0.43455375341076 Functional Loss - CSF3 ENSG00000108342 UTR3 Human protein_coding chr17:38173540 chr17:38173543 . . 0 24 hm5C_associated_SNPs_83862 0 0 0 1 38173541 38173561 mRNA hsa-miR-876-5p CSF3 miRanda miRanda
6745 chr1 160318821 160318821 1 + G A GBM 160318818 + 160318798 160318838 41 GTGGAGACACAGGGGTTATCCACGTAGTAGAGAAAGAGGAG GTGGAGACACAGGGGTTATCCACATAGTAGAGAAAGAGGAG < 41bp 0.774360856982592 0.557098951921636 0.5385376 0.24003398 prediction 0.434523810121913 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160318818 chr1:160318821 nonsynonymous SNV 0.758 2 24 hm5C_associated_SNPs_83873 0 0 1 2 160318817 160318838 mRNA hsa-miR-204 NCSTN miRanda miRanda
6746 chr1 160318821 160318821 1 + G A GBM 160318818 + 160318798 160318838 41 GTGGAGACACAGGGGTTATCCACGTAGTAGAGAAAGAGGAG GTGGAGACACAGGGGTTATCCACATAGTAGAGAAAGAGGAG < 41bp 0.774360856982592 0.557098951921636 0.5385376 0.24003398 prediction 0.434523810121913 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160318818 chr1:160318821 nonsynonymous SNV 0.758 2 24 hm5C_associated_SNPs_83873 0 0 1 2 160318817 160318838 mRNA hsa-miR-211 NCSTN miRanda miRanda
6747 chr12 57882850 57882850 1 + T C UCEC 57882849 + 57882829 57882869 41 CTAAGGTCCCTGTCTTGCAGCTGGATAGCGGCAACTACCTC CTAAGGTCCCTGTCTTGCAGCCGGATAGCGGCAACTACCTC < 41bp 0.800622457616926 0.583391011124592 0.17354804 0.37419128 prediction 0.434462892984668 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57882849 chr12:57882850 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_83898 0 0 1 11 57882847 57882870 mRNA hsa-let-7a MARS miRanda miRanda
6748 chr12 57882850 57882850 1 + T C UCEC 57882849 + 57882829 57882869 41 CTAAGGTCCCTGTCTTGCAGCTGGATAGCGGCAACTACCTC CTAAGGTCCCTGTCTTGCAGCCGGATAGCGGCAACTACCTC < 41bp 0.800622457616926 0.583391011124592 0.17354804 0.37419128 prediction 0.434462892984668 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57882849 chr12:57882850 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_83898 0 0 1 11 57882847 57882870 mRNA hsa-let-7b MARS miRanda miRanda
6749 chr12 57882850 57882850 1 + T C UCEC 57882849 + 57882829 57882869 41 CTAAGGTCCCTGTCTTGCAGCTGGATAGCGGCAACTACCTC CTAAGGTCCCTGTCTTGCAGCCGGATAGCGGCAACTACCTC < 41bp 0.800622457616926 0.583391011124592 0.17354804 0.37419128 prediction 0.434462892984668 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57882849 chr12:57882850 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_83898 0 0 1 11 57882847 57882870 mRNA hsa-let-7c MARS miRanda miRanda
6750 chr12 57882850 57882850 1 + T C UCEC 57882849 + 57882829 57882869 41 CTAAGGTCCCTGTCTTGCAGCTGGATAGCGGCAACTACCTC CTAAGGTCCCTGTCTTGCAGCCGGATAGCGGCAACTACCTC < 41bp 0.800622457616926 0.583391011124592 0.17354804 0.37419128 prediction 0.434462892984668 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57882849 chr12:57882850 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_83898 0 0 1 11 57882847 57882870 mRNA hsa-let-7d MARS miRanda miRanda
6751 chr12 57882850 57882850 1 + T C UCEC 57882849 + 57882829 57882869 41 CTAAGGTCCCTGTCTTGCAGCTGGATAGCGGCAACTACCTC CTAAGGTCCCTGTCTTGCAGCCGGATAGCGGCAACTACCTC < 41bp 0.800622457616926 0.583391011124592 0.17354804 0.37419128 prediction 0.434462892984668 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57882849 chr12:57882850 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_83898 0 0 1 11 57882847 57882870 mRNA hsa-let-7e MARS miRanda miRanda
6752 chr12 57882850 57882850 1 + T C UCEC 57882849 + 57882829 57882869 41 CTAAGGTCCCTGTCTTGCAGCTGGATAGCGGCAACTACCTC CTAAGGTCCCTGTCTTGCAGCCGGATAGCGGCAACTACCTC < 41bp 0.800622457616926 0.583391011124592 0.17354804 0.37419128 prediction 0.434462892984668 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57882849 chr12:57882850 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_83898 0 0 1 11 57882849 57882870 mRNA hsa-let-7f MARS miRanda miRanda
6753 chr12 57882850 57882850 1 + T C UCEC 57882849 + 57882829 57882869 41 CTAAGGTCCCTGTCTTGCAGCTGGATAGCGGCAACTACCTC CTAAGGTCCCTGTCTTGCAGCCGGATAGCGGCAACTACCTC < 41bp 0.800622457616926 0.583391011124592 0.17354804 0.37419128 prediction 0.434462892984668 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57882849 chr12:57882850 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_83898 0 0 1 11 57882849 57882870 mRNA hsa-miR-98 MARS miRanda miRanda
6754 chr12 57882850 57882850 1 + T C UCEC 57882849 + 57882829 57882869 41 CTAAGGTCCCTGTCTTGCAGCTGGATAGCGGCAACTACCTC CTAAGGTCCCTGTCTTGCAGCCGGATAGCGGCAACTACCTC < 41bp 0.800622457616926 0.583391011124592 0.17354804 0.37419128 prediction 0.434462892984668 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57882849 chr12:57882850 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_83898 0 0 1 11 57882849 57882869 mRNA hsa-miR-196a MARS miRanda miRanda
6755 chr12 57882850 57882850 1 + T C UCEC 57882849 + 57882829 57882869 41 CTAAGGTCCCTGTCTTGCAGCTGGATAGCGGCAACTACCTC CTAAGGTCCCTGTCTTGCAGCCGGATAGCGGCAACTACCTC < 41bp 0.800622457616926 0.583391011124592 0.17354804 0.37419128 prediction 0.434462892984668 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57882849 chr12:57882850 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_83898 0 0 1 11 57882847 57882870 mRNA hsa-let-7g MARS miRanda miRanda
6756 chr12 57882850 57882850 1 + T C UCEC 57882849 + 57882829 57882869 41 CTAAGGTCCCTGTCTTGCAGCTGGATAGCGGCAACTACCTC CTAAGGTCCCTGTCTTGCAGCCGGATAGCGGCAACTACCTC < 41bp 0.800622457616926 0.583391011124592 0.17354804 0.37419128 prediction 0.434462892984668 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57882849 chr12:57882850 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_83898 0 0 1 11 57882847 57882870 mRNA hsa-let-7i MARS miRanda miRanda
6757 chr12 57882850 57882850 1 + T C UCEC 57882849 + 57882829 57882869 41 CTAAGGTCCCTGTCTTGCAGCTGGATAGCGGCAACTACCTC CTAAGGTCCCTGTCTTGCAGCCGGATAGCGGCAACTACCTC < 41bp 0.800622457616926 0.583391011124592 0.17354804 0.37419128 prediction 0.434462892984668 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57882849 chr12:57882850 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_83898 0 0 1 11 57882849 57882869 mRNA hsa-miR-196b MARS miRanda miRanda
6758 chr18 77107879 77107879 1 + T C UCEC 77107878 + 77107858 77107898 41 GCTACAAGAGGTCGGCGGCACTCGGCCAGTTCGTCATGCAC GCTACAAGAGGTCGGCGGCACCCGGCCAGTTCGTCATGCAC < 41bp 0.717229021038616 0.460357319206794 0.5802916 0.30345798 prediction 0.434458042077232 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77107878 chr18:77107879 nonsynonymous SNV 0.043 5 22 hm5C_associated_SNPs_83901 0 0 0 2 77107867 77107888 mRNA hsa-miR-193a-3p ATP9B miRanda miRanda
6759 chr18 77107879 77107879 1 + T C UCEC 77107878 + 77107858 77107898 41 GCTACAAGAGGTCGGCGGCACTCGGCCAGTTCGTCATGCAC GCTACAAGAGGTCGGCGGCACCCGGCCAGTTCGTCATGCAC < 41bp 0.717229021038616 0.460357319206794 0.5802916 0.30345798 prediction 0.434458042077232 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77107878 chr18:77107879 nonsynonymous SNV 0.043 5 22 hm5C_associated_SNPs_83901 0 0 0 2 77107871 77107888 mRNA hsa-miR-193b ATP9B miRanda miRanda
6760 chr18 12274254 12274254 1 + G T UCEC 12274252 + 12274232 12274272 41 GTCCTACGACATCCGGTGCACGGGACTCAAGGGCCTGCTGA GTCCTACGACATCCGGTGCACGTGACTCAAGGGCCTGCTGA < 41bp 0.910418319532548 0.693203382032656 0.41267866 0.40157607 prediction 0.434429874999784 Functional Loss - CIDEA ENSG00000176194 CDS Human protein_coding chr18:12274252 chr18:12274254 stopgain 0.014 0 23 hm5C_associated_SNPs_83912 0 0 0 3 12274251 12274272 mRNA hsa-miR-214 CIDEA miRanda miRanda
6761 chr18 12274254 12274254 1 + G T UCEC 12274252 + 12274232 12274272 41 GTCCTACGACATCCGGTGCACGGGACTCAAGGGCCTGCTGA GTCCTACGACATCCGGTGCACGTGACTCAAGGGCCTGCTGA < 41bp 0.910418319532548 0.693203382032656 0.41267866 0.40157607 prediction 0.434429874999784 Functional Loss - CIDEA ENSG00000176194 CDS Human protein_coding chr18:12274252 chr18:12274254 stopgain 0.014 0 23 hm5C_associated_SNPs_83912 0 0 0 3 12274241 12274262 mRNA hsa-miR-133a CIDEA miRanda miRanda
6762 chr18 12274254 12274254 1 + G T UCEC 12274252 + 12274232 12274272 41 GTCCTACGACATCCGGTGCACGGGACTCAAGGGCCTGCTGA GTCCTACGACATCCGGTGCACGTGACTCAAGGGCCTGCTGA < 41bp 0.910418319532548 0.693203382032656 0.41267866 0.40157607 prediction 0.434429874999784 Functional Loss - CIDEA ENSG00000176194 CDS Human protein_coding chr18:12274252 chr18:12274254 stopgain 0.014 0 23 hm5C_associated_SNPs_83912 0 0 0 3 12274241 12274262 mRNA hsa-miR-133b CIDEA miRanda miRanda
6763 chr19 13084371 13084371 1 + G T UCEC 13084367 + 13084347 13084387 41 CCCGTGGTCCTGTGGTGTCTCACTGGCAGCTCAGCCTCCCG CCCGTGGTCCTGTGGTGTCTCACTTGCAGCTCAGCCTCCCG < 41bp 0.722889350522908 0.505733580474335 0.17521182 0.04327455 prediction 0.434311540097145 Functional Loss - DAND5 ENSG00000179284 CDS Human protein_coding chr19:13084367 chr19:13084371 nonsynonymous SNV 0.004 3 25 hm5C_associated_SNPs_83961 0 0 1 1 13084358 13084378 mRNA hsa-miR-22 DAND5 miRanda miRanda
6764 chr20 3870171 3870171 1 + A C rs561872310 3870167 + 3870147 3870187 41 GAGCGCCACGGCAGGGCTTCCGCCACCTCCGTCTCGTCGGC GAGCGCCACGGCAGGGCTTCCGCCCCCTCCGTCTCGTCGGC < 41bp 0.930895759776705 0.713837984994738 0.31368664 0.16681594 prediction 0.434115549563934 Functional Loss - PANK2 ENSG00000125779 CDS Human protein_coding chr20:3870167 chr20:3870171 nonsynonymous SNV 0.161 1 25 hm5C_associated_SNPs_84040 0 0 1 1 3870150 3870173 mRNA hsa-miR-491-5p PANK2 miRanda miRanda
6765 chr8 22477530 22477530 1 + A C rs201917097 22477529 + 22477509 22477549 41 TCTTCCAGTTTAGAATAAGACAGGGGAGAAAAAGGCTTTTC TCTTCCAGTTTAGAATAAGACCGGGGAGAAAAAGGCTTTTC < 41bp 0.831054049959256 0.614003157705066 0.8560927 0.14831632 prediction 0.434101784508381 Functional Loss - CCAR2 ENSG00000158941 UTR3 Human protein_coding chr8:22477529 chr8:22477530 . . 0 22 hm5C_associated_SNPs_84049 0 0 1 1 22477512 22477534 mRNA hsa-miR-339-5p KIAA1967 miRanda miRanda
6766 chr1 112240096 112240096 1 + G A SKCM 112240093 + 112240073 112240113 41 TCGATTGCCAACAGTGTATGCTCGAAATCCTGGATACTGCA TCGATTGCCAACAGTGTATGCTCAAAATCCTGGATACTGCA < 41bp 0.748483394257556 0.531436699098818 0.26227176 0.26996195 prediction 0.434093390317477 Functional Loss - RAP1A ENSG00000116473 CDS Human protein_coding chr1:112240093 chr1:112240096 nonsynonymous SNV 0.976 1 24 hm5C_associated_SNPs_84051 0 0 1 2 112240092 112240114 mRNA hsa-miR-448 RAP1A miRanda miRanda
6767 chr1 112240096 112240096 1 + G A SKCM 112240093 + 112240073 112240113 41 TCGATTGCCAACAGTGTATGCTCGAAATCCTGGATACTGCA TCGATTGCCAACAGTGTATGCTCAAAATCCTGGATACTGCA < 41bp 0.748483394257556 0.531436699098818 0.26227176 0.26996195 prediction 0.434093390317477 Functional Loss - RAP1A ENSG00000116473 CDS Human protein_coding chr1:112240093 chr1:112240096 nonsynonymous SNV 0.976 1 24 hm5C_associated_SNPs_84051 0 0 1 2 112240084 112240103 mRNA hsa-miR-876-5p RAP1A miRanda miRanda
6768 chr11 75280261 75280261 1 + G A rs528442568 75280258 + 75280238 75280278 41 GGGCCTGCAGGCCTTGGAGCCAGGGGGAGGTGCTTGGGGGA GGGCCTGCAGGCCTTGGAGCCAGAGGGAGGTGCTTGGGGGA < 41bp 0.781782487586975 0.56478061230833 0.937389 0.93550396 prediction 0.434003750557289 Functional Loss - SERPINH1 ENSG00000149257 UTR3 Human protein_coding chr11:75280258 chr11:75280261 . . 0 24 hm5C_associated_SNPs_84082 0 0 1 1 75280238 75280261 mRNA hsa-miR-149 SERPINH1 miRanda miRanda
6769 chr1 165533075 165533075 1 + C T rs6676948 165533073 + 165533053 165533093 41 CTTATTTAGTTGCCAGAGACCACTATCTTATGTGCCTCCCC CTTATTTAGTTGCCAGAGACCATTATCTTATGTGCCTCCCC < 41bp 0.716957362969584 0.484487091622125 0.10186568 0.07045728 prediction 0.433914725939168 Functional Loss - LOC400794 ENSG00000237463 ncRNA_intronic Human antisense chr1:165533073 chr1:165533075 . . 0 23 hm5C_associated_SNPs_84112 0 0 0 1 165533062 165533077 mRNA hsa-miR-140-5p LRRC52 miRanda miRanda
6770 chrX 109764228 109764228 1 + C T HNSC 109764226 + 109764206 109764246 41 TGCTACGACCTTCTGGGGAACGCGAATTTCTCATTTTCTTC TGCTACGACCTTCTGGGGAACGTGAATTTCTCATTTTCTTC < 41bp 0.809064385819188 0.592175144285322 0.2225888 0.3534525 prediction 0.433778483067732 Functional Loss - TDGF1P3 ENSG00000225366 ncRNA_exonic Human transcribed_processed_pseudogene chrX:109764226 chrX:109764228 . . 0 23 hm5C_associated_SNPs_84156 0 0 0 1 109764217 109764238 mRNA hsa-miR-539 TDGF3 miRanda miRanda
6771 chr22 42120046 42120046 1 + G A SKCM 42120043 + 42120023 42120063 41 TAAGAATATCGAAGGGTCATCAGGAAATACCTCACTGCCTT TAAGAATATCGAAGGGTCATCAGAAAATACCTCACTGCCTT < 41bp 0.752017387372786 0.535138348589463 0.9049102 0.8848618 prediction 0.433758077566645 Functional Loss - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42120043 chr22:42120046 nonsynonymous SNV 0.162 0 24 hm5C_associated_SNPs_84166 0 0 0 5 42120038 42120062 mRNA hsa-miR-34a MEI1 miRanda miRanda
6772 chr22 42120046 42120046 1 + G A SKCM 42120043 + 42120023 42120063 41 TAAGAATATCGAAGGGTCATCAGGAAATACCTCACTGCCTT TAAGAATATCGAAGGGTCATCAGAAAATACCTCACTGCCTT < 41bp 0.752017387372786 0.535138348589463 0.9049102 0.8848618 prediction 0.433758077566645 Functional Loss - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42120043 chr22:42120046 nonsynonymous SNV 0.162 0 24 hm5C_associated_SNPs_84166 0 0 0 5 42120038 42120062 mRNA hsa-miR-34c-5p MEI1 miRanda miRanda
6773 chr22 42120046 42120046 1 + G A SKCM 42120043 + 42120023 42120063 41 TAAGAATATCGAAGGGTCATCAGGAAATACCTCACTGCCTT TAAGAATATCGAAGGGTCATCAGAAAATACCTCACTGCCTT < 41bp 0.752017387372786 0.535138348589463 0.9049102 0.8848618 prediction 0.433758077566645 Functional Loss - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42120043 chr22:42120046 nonsynonymous SNV 0.162 0 24 hm5C_associated_SNPs_84166 0 0 0 5 42120041 42120062 mRNA hsa-miR-449a MEI1 miRanda miRanda
6774 chr22 42120046 42120046 1 + G A SKCM 42120043 + 42120023 42120063 41 TAAGAATATCGAAGGGTCATCAGGAAATACCTCACTGCCTT TAAGAATATCGAAGGGTCATCAGAAAATACCTCACTGCCTT < 41bp 0.752017387372786 0.535138348589463 0.9049102 0.8848618 prediction 0.433758077566645 Functional Loss - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42120043 chr22:42120046 nonsynonymous SNV 0.162 0 24 hm5C_associated_SNPs_84166 0 0 0 5 42120037 42120056 mRNA hsa-miR-202 MEI1 miRanda miRanda
6775 chr22 42120046 42120046 1 + G A SKCM 42120043 + 42120023 42120063 41 TAAGAATATCGAAGGGTCATCAGGAAATACCTCACTGCCTT TAAGAATATCGAAGGGTCATCAGAAAATACCTCACTGCCTT < 41bp 0.752017387372786 0.535138348589463 0.9049102 0.8848618 prediction 0.433758077566645 Functional Loss - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42120043 chr22:42120046 nonsynonymous SNV 0.162 0 24 hm5C_associated_SNPs_84166 0 0 0 5 42120041 42120062 mRNA hsa-miR-449b MEI1 miRanda miRanda
6776 chr22 51195669 51195669 1 + A C rs186888441 51195668 + 51195648 51195688 41 TGAACCCTCAGATGGAAATGCAGAAATCACCCGTCTTCTGC TGAACCCTCAGATGGAAATGCCGAAATCACCCGTCTTCTGC < 41bp 0.806858225852467 0.589990088729861 0.23456961 0.19189268 prediction 0.433736274245211 Functional Loss - RPL23AP82 ENSG00000184319 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:51195668 chr22:51195669 . . 0 22 hm5C_associated_SNPs_84176 0 0 0 1 51195652 51195673 mRNA hsa-miR-544 RPL23AP82 miRanda miRanda
6777 chr2 54587620 54587620 1 + G A UCEC 54587617 + 54587597 54587637 41 TGAGAGCAGAGAAAAGACCTCAGGCGCCACTCAAACAACTG TGAGAGCAGAGAAAAGACCTCAGACGCCACTCAAACAACTG < 41bp 0.763811876465363 0.546946065295685 0.4426219 0.26092875 prediction 0.433731622339356 Functional Loss - C2orf73 ENSG00000177994 CDS Human protein_coding chr2:54587617 chr2:54587620 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_84179 0 0 0 1 54587620 54587641 mRNA hsa-miR-139-5p C2orf73 miRanda miRanda
6778 chr3 56627979 56627979 1 + C T SKCM 56627976 + 56627956 56627996 41 GTATGTATCTTGCCAGCTTTCTCCGTTCTATGACTGCTCTC GTATGTATCTTGCCAGCTTTCTCTGTTCTATGACTGCTCTC < 41bp 0.720531581639518 0.503733925380686 0.34931746 0.15593097 prediction 0.433595312517664 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56627976 chr3:56627979 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_84232 0 0 1 6 56627972 56627994 mRNA hsa-miR-15a CCDC66 miRanda miRanda
6779 chr3 56627979 56627979 1 + C T SKCM 56627976 + 56627956 56627996 41 GTATGTATCTTGCCAGCTTTCTCCGTTCTATGACTGCTCTC GTATGTATCTTGCCAGCTTTCTCTGTTCTATGACTGCTCTC < 41bp 0.720531581639518 0.503733925380686 0.34931746 0.15593097 prediction 0.433595312517664 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56627976 chr3:56627979 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_84232 0 0 1 6 56627972 56627993 mRNA hsa-miR-103 CCDC66 miRanda miRanda
6780 chr3 56627979 56627979 1 + C T SKCM 56627976 + 56627956 56627996 41 GTATGTATCTTGCCAGCTTTCTCCGTTCTATGACTGCTCTC GTATGTATCTTGCCAGCTTTCTCTGTTCTATGACTGCTCTC < 41bp 0.720531581639518 0.503733925380686 0.34931746 0.15593097 prediction 0.433595312517664 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56627976 chr3:56627979 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_84232 0 0 1 6 56627972 56627993 mRNA hsa-miR-107 CCDC66 miRanda miRanda
6781 chr3 56627979 56627979 1 + C T SKCM 56627976 + 56627956 56627996 41 GTATGTATCTTGCCAGCTTTCTCCGTTCTATGACTGCTCTC GTATGTATCTTGCCAGCTTTCTCTGTTCTATGACTGCTCTC < 41bp 0.720531581639518 0.503733925380686 0.34931746 0.15593097 prediction 0.433595312517664 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56627976 chr3:56627979 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_84232 0 0 1 6 56627973 56627994 mRNA hsa-miR-195 CCDC66 miRanda miRanda
6782 chr3 56627979 56627979 1 + C T SKCM 56627976 + 56627956 56627996 41 GTATGTATCTTGCCAGCTTTCTCCGTTCTATGACTGCTCTC GTATGTATCTTGCCAGCTTTCTCTGTTCTATGACTGCTCTC < 41bp 0.720531581639518 0.503733925380686 0.34931746 0.15593097 prediction 0.433595312517664 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56627976 chr3:56627979 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_84232 0 0 1 6 56627972 56627989 mRNA hsa-miR-376a CCDC66 miRanda miRanda
6783 chr3 56627979 56627979 1 + C T SKCM 56627976 + 56627956 56627996 41 GTATGTATCTTGCCAGCTTTCTCCGTTCTATGACTGCTCTC GTATGTATCTTGCCAGCTTTCTCTGTTCTATGACTGCTCTC < 41bp 0.720531581639518 0.503733925380686 0.34931746 0.15593097 prediction 0.433595312517664 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56627976 chr3:56627979 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_84232 0 0 1 6 56627972 56627989 mRNA hsa-miR-376b CCDC66 miRanda miRanda
6784 chr17 26654122 26654122 1 + G A rs562056352 26654119 + 26654099 26654139 41 TTCCTTAGCCTCCCAAGTAGCTAGAACTACAGGTGTGTACC TTCCTTAGCCTCCCAAGTAGCTAAAACTACAGGTGTGTACC < 41bp 0.781501854252463 0.564717779275753 0.7304192 0.7316883 prediction 0.43356814995342 Functional Loss - TMEM97 ENSG00000109084 UTR3 Human protein_coding chr17:26654119 chr17:26654122 . . 0 24 hm5C_associated_SNPs_84242 0 0 1 3 26654110 26654135 mRNA hsa-miR-10a TMEM97 miRanda miRanda
6785 chr17 26654122 26654122 1 + G A rs562056352 26654119 + 26654099 26654139 41 TTCCTTAGCCTCCCAAGTAGCTAGAACTACAGGTGTGTACC TTCCTTAGCCTCCCAAGTAGCTAAAACTACAGGTGTGTACC < 41bp 0.781501854252463 0.564717779275753 0.7304192 0.7316883 prediction 0.43356814995342 Functional Loss - TMEM97 ENSG00000109084 UTR3 Human protein_coding chr17:26654119 chr17:26654122 . . 0 24 hm5C_associated_SNPs_84242 0 0 1 3 26654113 26654137 mRNA hsa-miR-362-3p TMEM97 miRanda miRanda
6786 chr17 26654122 26654122 1 + G A rs562056352 26654119 + 26654099 26654139 41 TTCCTTAGCCTCCCAAGTAGCTAGAACTACAGGTGTGTACC TTCCTTAGCCTCCCAAGTAGCTAAAACTACAGGTGTGTACC < 41bp 0.781501854252463 0.564717779275753 0.7304192 0.7316883 prediction 0.43356814995342 Functional Loss - TMEM97 ENSG00000109084 UTR3 Human protein_coding chr17:26654119 chr17:26654122 . . 0 24 hm5C_associated_SNPs_84242 0 0 1 3 26654112 26654137 mRNA hsa-miR-329 TMEM97 miRanda miRanda
6787 chr10 102738691 102738691 1 - G A SKCM 102738694 - 102738674 102738714 41 GAGCCCTCCTCAGTGGCACGCTCCGTGAAGAAGTAGTACAC GAGCCCTCCTCAGTGGCACGCTCTGTGAAGAAGTAGTACAC < 41bp 0.746178853906906 0.529439483695501 0.20472458 0.27337795 prediction 0.43347874042281 Functional Loss - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102738694 chr10:102738691 synonymous SNV . 0 24 hm5C_associated_SNPs_84273 0 0 0 1 102738666 102738691 mRNA hsa-miR-488 MRPL43 miRanda miRanda
6788 chr12 71978453 71978453 1 + C T LGG 71978450 + 71978430 71978470 41 GCCTCCCAGTTCCGTGCCATCACCAGCTTATCCAGTGACTG GCCTCCCAGTTCCGTGCCATCACTAGCTTATCCAGTGACTG < 41bp 0.729446890480494 0.512714655999673 0.09137052 0.06283936 prediction 0.433464468961642 Functional Loss - LGR5 ENSG00000139292 CDS Human protein_coding chr12:71978450 chr12:71978453 nonsynonymous SNV 0.173 1 24 hm5C_associated_SNPs_84282 0 0 1 1 71978435 71978457 mRNA hsa-miR-138 LGR5 miRanda miRanda
6789 chr15 65856658 65856658 1 + C T SKCM 65856655 + 65856635 65856675 41 AGCAATTGGAGTCACTACGTCACCGGTGCTGCCTTCTCTGA AGCAATTGGAGTCACTACGTCACTGGTGCTGCCTTCTCTGA < 41bp 0.716701882513831 0.498011784502945 0.19584954 0.22853708 prediction 0.433403765027662 Functional Loss - HACD3 ENSG00000074696 CDS Human protein_coding chr15:65856655 chr15:65856658 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_84307 0 0 1 2 65856649 65856670 mRNA hsa-miR-124 PTPLAD1 miRanda miRanda
6790 chr15 65856658 65856658 1 + C T SKCM 65856655 + 65856635 65856675 41 AGCAATTGGAGTCACTACGTCACCGGTGCTGCCTTCTCTGA AGCAATTGGAGTCACTACGTCACTGGTGCTGCCTTCTCTGA < 41bp 0.716701882513831 0.498011784502945 0.19584954 0.22853708 prediction 0.433403765027662 Functional Loss - HACD3 ENSG00000074696 CDS Human protein_coding chr15:65856655 chr15:65856658 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_84307 0 0 1 2 65856655 65856678 mRNA hsa-miR-383 PTPLAD1 miRanda miRanda
6791 chr7 5342487 5342487 1 + T C COAD 5342486 + 5342466 5342506 41 CTGGGGTCCGCCGTGGCCTACTGCACCTACAGCCTCACCCG CTGGGGTCCGCCGTGGCCTACCGCACCTACAGCCTCACCCG < 41bp 0.803909137287555 0.587416942168328 0.2882099 0.1870515 prediction 0.432984390238454 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5342486 chr7:5342487 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_84466 0 0 0 1 5342481 5342502 mRNA hsa-miR-485-5p SLC29A4 miRanda miRanda
6792 chr17 48245356 48245356 1 + G A UCEC 48245353 + 48245333 48245373 41 TTGATACCACTCGGCAGAGGCTGGTGCTGGAGATTGGGGAC TTGATACCACTCGGCAGAGGCTGATGCTGGAGATTGGGGAC < 41bp 0.716458819079801 0.463513252112136 0.85290694 0.8729316 prediction 0.432917638159603 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245353 chr17:48245356 nonsynonymous SNV 0.810 3 24 hm5C_associated_SNPs_84484 0 0 0 4 48245340 48245361 mRNA hsa-miR-29a SGCA miRanda miRanda
6793 chr17 48245356 48245356 1 + G A UCEC 48245353 + 48245333 48245373 41 TTGATACCACTCGGCAGAGGCTGGTGCTGGAGATTGGGGAC TTGATACCACTCGGCAGAGGCTGATGCTGGAGATTGGGGAC < 41bp 0.716458819079801 0.463513252112136 0.85290694 0.8729316 prediction 0.432917638159603 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245353 chr17:48245356 nonsynonymous SNV 0.810 3 24 hm5C_associated_SNPs_84484 0 0 0 4 48245338 48245361 mRNA hsa-miR-29b SGCA miRanda miRanda
6794 chr17 48245356 48245356 1 + G A UCEC 48245353 + 48245333 48245373 41 TTGATACCACTCGGCAGAGGCTGGTGCTGGAGATTGGGGAC TTGATACCACTCGGCAGAGGCTGATGCTGGAGATTGGGGAC < 41bp 0.716458819079801 0.463513252112136 0.85290694 0.8729316 prediction 0.432917638159603 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245353 chr17:48245356 nonsynonymous SNV 0.810 3 24 hm5C_associated_SNPs_84484 0 0 0 4 48245344 48245368 mRNA hsa-miR-216a SGCA miRanda miRanda
6795 chr17 48245356 48245356 1 + G A UCEC 48245353 + 48245333 48245373 41 TTGATACCACTCGGCAGAGGCTGGTGCTGGAGATTGGGGAC TTGATACCACTCGGCAGAGGCTGATGCTGGAGATTGGGGAC < 41bp 0.716458819079801 0.463513252112136 0.85290694 0.8729316 prediction 0.432917638159603 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245353 chr17:48245356 nonsynonymous SNV 0.810 3 24 hm5C_associated_SNPs_84484 0 0 0 4 48245340 48245361 mRNA hsa-miR-29c SGCA miRanda miRanda
6796 chr22 35812362 35812362 1 + G A UCEC 35812359 + 35812339 35812379 41 AAGATGACCGTGTGGCAATCCACGAAGCCATGGAGCAGCAG AAGATGACCGTGTGGCAATCCACAAAGCCATGGAGCAGCAG < 41bp 0.800097763346964 0.583781678300668 0.2544539 0.28183407 prediction 0.432632170092592 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35812359 chr22:35812362 nonsynonymous SNV 0.892 4 24 hm5C_associated_SNPs_84579 0 0 1 3 35812346 35812370 mRNA hsa-miR-135a MCM5 miRanda miRanda
6797 chr22 35812362 35812362 1 + G A UCEC 35812359 + 35812339 35812379 41 AAGATGACCGTGTGGCAATCCACGAAGCCATGGAGCAGCAG AAGATGACCGTGTGGCAATCCACAAAGCCATGGAGCAGCAG < 41bp 0.800097763346964 0.583781678300668 0.2544539 0.28183407 prediction 0.432632170092592 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35812359 chr22:35812362 nonsynonymous SNV 0.892 4 24 hm5C_associated_SNPs_84579 0 0 1 3 35812356 35812380 mRNA hsa-miR-149 MCM5 miRanda miRanda
6798 chr22 35812362 35812362 1 + G A UCEC 35812359 + 35812339 35812379 41 AAGATGACCGTGTGGCAATCCACGAAGCCATGGAGCAGCAG AAGATGACCGTGTGGCAATCCACAAAGCCATGGAGCAGCAG < 41bp 0.800097763346964 0.583781678300668 0.2544539 0.28183407 prediction 0.432632170092592 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35812359 chr22:35812362 nonsynonymous SNV 0.892 4 24 hm5C_associated_SNPs_84579 0 0 1 3 35812346 35812370 mRNA hsa-miR-135b MCM5 miRanda miRanda
6799 chr16 29821526 29821526 1 + C T BRCA 29821524 + 29821504 29821544 41 GGAGGGGGTGCCTGTGAGCTCTCAGCCACTTCCCTCCCAAC GGAGGGGGTGCCTGTGAGCTCTTAGCCACTTCCCTCCCAAC < 41bp 0.777693062828577 0.561460415786524 0.15599003 0.09912601 prediction 0.432465294084105 Functional Loss - MAZ ENSG00000103495 CDS Human protein_coding chr16:29821524 chr16:29821526 stopgain 1.000 1 23 hm5C_associated_SNPs_84644 0 0 1 1 29821512 29821535 mRNA hsa-miR-372 MAZ miRanda miRanda
6800 chr17 7344858 7344858 1 + G A CESC 7344855 + 7344835 7344875 41 GTTTCTACCTCCAGGCGAATCCCGACGGAAGCATCCAGGGC GTTTCTACCTCCAGGCGAATCCCAACGGAAGCATCCAGGGC < 41bp 0.810834658572258 0.59464572980462 0.7756232 0.5604799 prediction 0.432377857535275 Functional Loss - FGF11 ENSG00000161958 CDS Human protein_coding chr17:7344855 chr17:7344858 nonsynonymous SNV 0.719 1 24 hm5C_associated_SNPs_84675 0 0 0 1 7344856 7344877 mRNA hsa-miR-874 FGF11 miRanda miRanda
6801 chr6 144207206 144207206 1 + G T UCEC 144207204 + 144207184 144207224 41 ATATGTAAGAAACTCTTCAACAGAAAGCGTAAACCTTTCAG ATATGTAAGAAACTCTTCAACATAAAGCGTAAACCTTTCAG < 41bp 0.716168528226864 0.381624422168144 0.15974346 0.030318677 prediction 0.432337056453729 Functional Loss - ZC2HC1B ENSG00000118491 CDS Human protein_coding chr6:144207204 chr6:144207206 nonsynonymous SNV 0.983 2 23 hm5C_associated_SNPs_84688 0 0 0 2 144207204 144207224 mRNA hsa-miR-488 C6orf94 miRanda miRanda
6802 chr6 144207206 144207206 1 + G T UCEC 144207204 + 144207184 144207224 41 ATATGTAAGAAACTCTTCAACAGAAAGCGTAAACCTTTCAG ATATGTAAGAAACTCTTCAACATAAAGCGTAAACCTTTCAG < 41bp 0.716168528226864 0.381624422168144 0.15974346 0.030318677 prediction 0.432337056453729 Functional Loss - ZC2HC1B ENSG00000118491 CDS Human protein_coding chr6:144207204 chr6:144207206 nonsynonymous SNV 0.983 2 23 hm5C_associated_SNPs_84688 0 0 0 2 144207186 144207206 mRNA hsa-miR-653 C6orf94 miRanda miRanda
6803 chr12 9020926 9020926 1 + G A COAD 9020923 + 9020903 9020943 41 ATGTGAGCAACCGACTTCACCTCGATCCTTGACTCTCACTA ATGTGAGCAACCGACTTCACCTCAATCCTTGACTCTCACTA < 41bp 0.716161857245447 0.469820924949335 0.3542434 0.029118001 prediction 0.432323714490893 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9020923 chr12:9020926 nonsynonymous SNV 0.136 0 24 hm5C_associated_SNPs_84690 0 0 0 1 9020903 9020926 mRNA hsa-let-7d A2ML1 miRanda miRanda
6804 chr12 9020925 9020925 1 + C T OV 9020923 + 9020903 9020943 41 ATGTGAGCAACCGACTTCACCTCGATCCTTGACTCTCACTA ATGTGAGCAACCGACTTCACCTTGATCCTTGACTCTCACTA < 41bp 0.716161857245447 0.427405439024837 0.3542434 0.021076024 prediction 0.432323714490893 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9020923 chr12:9020925 stopgain 0.135 0 23 hm5C_associated_SNPs_84691 0 0 0 1 9020903 9020926 mRNA hsa-let-7d A2ML1 miRanda miRanda
6805 chr9 15461795 15461795 1 + G A rs188286813 15461792 + 15461772 15461812 41 ATTGGCTTGGAGATGACAAGCACGAGTTTCTGGTATGTCTA ATTGGCTTGGAGATGACAAGCACAAGTTTCTGGTATGTCTA < 41bp 0.723490023059656 0.507367631410589 0.3256483 0.14312792 prediction 0.432244783298134 Functional Loss - SNAPC3 ENSG00000164975 UTR3 Human protein_coding chr9:15461792 chr9:15461795 . . 0 24 hm5C_associated_SNPs_84718 0 0 1 2 15461790 15461803 mRNA hsa-miR-28-5p SNAPC3 miRanda miRanda
6806 chr9 15461795 15461795 1 + G A rs188286813 15461792 + 15461772 15461812 41 ATTGGCTTGGAGATGACAAGCACGAGTTTCTGGTATGTCTA ATTGGCTTGGAGATGACAAGCACAAGTTTCTGGTATGTCTA < 41bp 0.723490023059656 0.507367631410589 0.3256483 0.14312792 prediction 0.432244783298134 Functional Loss - SNAPC3 ENSG00000164975 UTR3 Human protein_coding chr9:15461792 chr9:15461795 . . 0 24 hm5C_associated_SNPs_84718 0 0 1 2 15461790 15461803 mRNA hsa-miR-708 SNAPC3 miRanda miRanda
6807 chr12 110024582 110024582 1 + G T UCEC 110024579 + 110024559 110024599 41 GAGGAGCCCTCCGATACCATCAAGGGAAGATTTCATCCTTA GAGGAGCCCTCCGATACCATCAATGGAAGATTTCATCCTTA < 41bp 0.716103971643537 0.304910842221058 0.9000956 0.34514078 prediction 0.432207943287074 Functional Loss - MVK ENSG00000110921 CDS Human protein_coding chr12:110024579 chr12:110024582 nonsynonymous SNV 0.478 5 24 hm5C_associated_SNPs_84731 0 0 1 1 110024573 110024596 mRNA hsa-miR-539 MVK miRanda miRanda
6808 chr20 3630100 3630100 1 + A T rs116988078 3630096 + 3630076 3630116 41 ATGCTGGATATCCAGGTTCTCGCCAGGCCCCGATACATGAA ATGCTGGATATCCAGGTTCTCGCCTGGCCCCGATACATGAA < 41bp 0.716076541563292 0.417104084291997 0.7730316 0.20278978 prediction 0.432153083126584 Functional Loss - ATRN ENSG00000088812 UTR3 Human protein_coding chr20:3630096 chr20:3630100 . . 0 25 hm5C_associated_SNPs_84756 0 0 1 1 3630094 3630116 mRNA hsa-miR-433 ATRN miRanda miRanda
6809 chr6 55147129 55147129 1 + G A STAD 55147126 + 55147106 55147146 41 GGACGAACTAGCACAGAGAGCCGGAAGTCCTTGACCACTCA GGACGAACTAGCACAGAGAGCCGAAAGTCCTTGACCACTCA < 41bp 0.778881831227308 0.562819144295736 0.34499258 0.09497896 prediction 0.432125373863144 Functional Loss - HCRTR2 ENSG00000137252 CDS Human protein_coding chr6:55147126 chr6:55147129 synonymous SNV . 0 24 hm5C_associated_SNPs_84772 0 0 0 1 55147124 55147145 mRNA hsa-miR-140-5p HCRTR2 miRanda miRanda
6810 chr11 35198160 35198160 1 + G A STAD 35198157 + 35198137 35198177 41 GCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGTCGC GCCGCTTTGCAGGTGTATTCCACATGGAGAAAAATGGTCGC < 41bp 0.75134723149893 0.535334536897923 0.3870799 0.26242763 prediction 0.432025389202014 Functional Loss - CD44 ENSG00000026508 CDS Human protein_coding chr11:35198157 chr11:35198160 nonsynonymous SNV 0.912 4 24 hm5C_associated_SNPs_84806 0 0 1 1 35198155 35198179 mRNA hsa-miR-29b CD44 miRanda miRanda
6811 chr5 131996500 131996500 1 + A C rs848 131996499 + 131996479 131996519 41 CCCAGCACTAAAGCAGTGGACACCAGGAGTCCCTGGTAATA CCCAGCACTAAAGCAGTGGACCCCAGGAGTCCCTGGTAATA < 41bp 0.795674885323639 0.579701232093605 0.1460903 0.076494664 prediction 0.431947306460068 Functional Loss - IL13 ENSG00000223442 ncRNA_intronic Human antisense chr5:131996499 chr5:131996500 . . 0 22 hm5C_associated_SNPs_84837 0 1 0 1 131996487 131996510 mRNA hsa-miR-504 IL13 miRanda miRanda
6812 chr1 3831691 3831691 1 + G A rs139791976 3831688 + 3831668 3831708 41 TTGGGGTGGCAGAGGCTGAACGCGTGTGAGGTTTGGGGGAG TTGGGGTGGCAGAGGCTGAACGCATGTGAGGTTTGGGGGAG < 41bp 0.790576466573257 0.574711136711777 0.5687529 0.35626298 prediction 0.431730659722959 Functional Loss - LINC01134 ENSG00000236423 ncRNA_exonic Human lincRNA chr1:3831688 chr1:3831691 . . 0 24 hm5C_associated_SNPs_84906 0 0 1 1 3831676 3831698 lncRNA hsa-miR-342-3p LINC01134 miRanda starBase2
6813 chr19 55019149 55019149 1 + G T SARC 55019145 + 55019125 55019165 41 CATCTCGGCTGAGCCAGGCACTGTGATCTCCCCGGGGAGCC CATCTCGGCTGAGCCAGGCACTGTTATCTCCCCGGGGAGCC < 41bp 0.720290894232154 0.504439078878921 0.31054753 0.1564664 prediction 0.431703630706466 Functional Loss - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019145 chr19:55019149 synonymous SNV . 0 25 hm5C_associated_SNPs_84918 0 0 0 1 55019132 55019150 mRNA hsa-miR-128 LAIR2 miRanda miRanda
6814 chr1 115401288 115401288 1 + A C SKCM 115401287 + 115401267 115401307 41 GAAAGTAAGTTGCAAGAAAACAGAAAGATAATTGAAGCACA GAAAGTAAGTTGCAAGAAAACCGAAAGATAATTGAAGCACA < 41bp 0.780253256463655 0.564417877471412 0.35883883 0.34594536 prediction 0.431670757984487 Functional Loss - SYCP1 ENSG00000198765 CDS Human protein_coding chr1:115401287 chr1:115401288 synonymous SNV . 0 22 hm5C_associated_SNPs_84928 0 0 0 1 115401288 115401308 mRNA hsa-miR-218 SYCP1 miRanda miRanda
6815 chr6 154360708 154360708 1 + C T LIHC 154360706 + 154360686 154360726 41 AGCAGCGCTGCCCCCACGAACGCCAGCAATTGCACTGATGC AGCAGCGCTGCCCCCACGAACGTCAGCAATTGCACTGATGC < 41bp 0.715816021965329 0.498168591858181 0.25534117 0.33505362 prediction 0.431632043930658 Functional Loss - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154360706 chr6:154360708 nonsynonymous SNV 0.086 0 23 hm5C_associated_SNPs_84939 0 0 0 8 154360702 154360723 mRNA hsa-miR-148a OPRM1 miRanda miRanda
6816 chr6 154360708 154360708 1 + C T LIHC 154360706 + 154360686 154360726 41 AGCAGCGCTGCCCCCACGAACGCCAGCAATTGCACTGATGC AGCAGCGCTGCCCCCACGAACGTCAGCAATTGCACTGATGC < 41bp 0.715816021965329 0.498168591858181 0.25534117 0.33505362 prediction 0.431632043930658 Functional Loss - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154360706 chr6:154360708 nonsynonymous SNV 0.086 0 23 hm5C_associated_SNPs_84939 0 0 0 8 154360700 154360722 mRNA hsa-miR-130a OPRM1 miRanda miRanda
6817 chr6 154360708 154360708 1 + C T LIHC 154360706 + 154360686 154360726 41 AGCAGCGCTGCCCCCACGAACGCCAGCAATTGCACTGATGC AGCAGCGCTGCCCCCACGAACGTCAGCAATTGCACTGATGC < 41bp 0.715816021965329 0.498168591858181 0.25534117 0.33505362 prediction 0.431632043930658 Functional Loss - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154360706 chr6:154360708 nonsynonymous SNV 0.086 0 23 hm5C_associated_SNPs_84939 0 0 0 8 154360703 154360723 mRNA hsa-miR-152 OPRM1 miRanda miRanda
6818 chr6 154360708 154360708 1 + C T LIHC 154360706 + 154360686 154360726 41 AGCAGCGCTGCCCCCACGAACGCCAGCAATTGCACTGATGC AGCAGCGCTGCCCCCACGAACGTCAGCAATTGCACTGATGC < 41bp 0.715816021965329 0.498168591858181 0.25534117 0.33505362 prediction 0.431632043930658 Functional Loss - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154360706 chr6:154360708 nonsynonymous SNV 0.086 0 23 hm5C_associated_SNPs_84939 0 0 0 8 154360700 154360722 mRNA hsa-miR-301a OPRM1 miRanda miRanda
6819 chr6 154360708 154360708 1 + C T LIHC 154360706 + 154360686 154360726 41 AGCAGCGCTGCCCCCACGAACGCCAGCAATTGCACTGATGC AGCAGCGCTGCCCCCACGAACGTCAGCAATTGCACTGATGC < 41bp 0.715816021965329 0.498168591858181 0.25534117 0.33505362 prediction 0.431632043930658 Functional Loss - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154360706 chr6:154360708 nonsynonymous SNV 0.086 0 23 hm5C_associated_SNPs_84939 0 0 0 8 154360700 154360722 mRNA hsa-miR-130b OPRM1 miRanda miRanda
6820 chr6 154360708 154360708 1 + C T LIHC 154360706 + 154360686 154360726 41 AGCAGCGCTGCCCCCACGAACGCCAGCAATTGCACTGATGC AGCAGCGCTGCCCCCACGAACGTCAGCAATTGCACTGATGC < 41bp 0.715816021965329 0.498168591858181 0.25534117 0.33505362 prediction 0.431632043930658 Functional Loss - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154360706 chr6:154360708 nonsynonymous SNV 0.086 0 23 hm5C_associated_SNPs_84939 0 0 0 8 154360702 154360723 mRNA hsa-miR-148b OPRM1 miRanda miRanda
6821 chr6 154360708 154360708 1 + C T LIHC 154360706 + 154360686 154360726 41 AGCAGCGCTGCCCCCACGAACGCCAGCAATTGCACTGATGC AGCAGCGCTGCCCCCACGAACGTCAGCAATTGCACTGATGC < 41bp 0.715816021965329 0.498168591858181 0.25534117 0.33505362 prediction 0.431632043930658 Functional Loss - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154360706 chr6:154360708 nonsynonymous SNV 0.086 0 23 hm5C_associated_SNPs_84939 0 0 0 8 154360702 154360722 mRNA hsa-miR-454 OPRM1 miRanda miRanda
6822 chr6 154360708 154360708 1 + C T LIHC 154360706 + 154360686 154360726 41 AGCAGCGCTGCCCCCACGAACGCCAGCAATTGCACTGATGC AGCAGCGCTGCCCCCACGAACGTCAGCAATTGCACTGATGC < 41bp 0.715816021965329 0.498168591858181 0.25534117 0.33505362 prediction 0.431632043930658 Functional Loss - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154360706 chr6:154360708 nonsynonymous SNV 0.086 0 23 hm5C_associated_SNPs_84939 0 0 0 8 154360699 154360722 mRNA hsa-miR-301b OPRM1 miRanda miRanda
6823 chr19 44681133 44681133 1 + G A UCEC 44681130 + 44681110 44681150 41 GCAGGGTTTCAATCAGAGCTCACGACTTCAGATTCACCAGC GCAGGGTTTCAATCAGAGCTCACAACTTCAGATTCACCAGC < 41bp 0.794520687507632 0.578721983086918 0.26543385 0.088014424 prediction 0.431597408841428 Functional Loss - ZNF226 ENSG00000167380 CDS Human protein_coding chr19:44681130 chr19:44681133 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_84948 0 0 0 1 44681127 44681151 mRNA hsa-miR-138 ZNF226 miRanda miRanda
6824 chr1 111032156 111032156 1 + A C rs17629863 111032155 + 111032135 111032175 41 GTGGCAACATCCTCAACATCCAGCAGGCCATTGGAGCCACT GTGGCAACATCCTCAACATCCCGCAGGCCATTGGAGCCACT < 41bp 0.803771408841593 0.588002093851467 0.059494257 0.024937958 prediction 0.431538629980253 Functional Loss - CYMP;CYMP-AS1 ENSG00000235407;ENSG00000240194 ncRNA_exonic Human other chr1:111032155 chr1:111032156 . . 0 22 hm5C_associated_SNPs_84969 0 0 0 1 111032136 111032159 mRNA hsa-miR-138 CYMP miRanda miRanda
6825 chr19 7831586 7831586 1 + G A SKCM 7831583 + 7831563 7831603 41 CCAAGGACTGGACATTCTTCCAAGGAAACTGTTACTTCATG CCAAGGACTGGACATTCTTCCAAAGAAACTGTTACTTCATG < 41bp 0.764435863339447 0.548727917701589 0.9141462 0.69342333 prediction 0.431415891275716 Functional Loss - CLEC4M ENSG00000104938 CDS Human protein_coding chr19:7831583 chr19:7831586 nonsynonymous SNV 0.971 2 24 hm5C_associated_SNPs_85021 0 0 0 1 7831579 7831598 mRNA hsa-miR-194 CLEC4M miRanda miRanda
6826 chr5 154347923 154347923 1 + A T rs144820044 154347919 + 154347899 154347939 41 ATGGAGTCAGGGAAATAACACTGGAATATTAAAAGGTAACC ATGGAGTCAGGGAAATAACACTGGTATATTAAAAGGTAACC < 41bp 0.839364219225342 0.623665224580255 0.26359022 0.28399807 prediction 0.431397989290173 Functional Loss - MRPL22 ENSG00000082515 UTR3 Human protein_coding chr5:154347919 chr5:154347923 . . 0 25 hm5C_associated_SNPs_85026 0 0 0 3 154347903 154347923 mRNA hsa-miR-199a-5p MRPL22 miRanda miRanda
6827 chr5 154347923 154347923 1 + A T rs144820044 154347919 + 154347899 154347939 41 ATGGAGTCAGGGAAATAACACTGGAATATTAAAAGGTAACC ATGGAGTCAGGGAAATAACACTGGTATATTAAAAGGTAACC < 41bp 0.839364219225342 0.623665224580255 0.26359022 0.28399807 prediction 0.431397989290173 Functional Loss - MRPL22 ENSG00000082515 UTR3 Human protein_coding chr5:154347919 chr5:154347923 . . 0 25 hm5C_associated_SNPs_85026 0 0 0 3 154347901 154347923 mRNA hsa-miR-199b-5p MRPL22 miRanda miRanda
6828 chr5 154347923 154347923 1 + A T rs144820044 154347919 + 154347899 154347939 41 ATGGAGTCAGGGAAATAACACTGGAATATTAAAAGGTAACC ATGGAGTCAGGGAAATAACACTGGTATATTAAAAGGTAACC < 41bp 0.839364219225342 0.623665224580255 0.26359022 0.28399807 prediction 0.431397989290173 Functional Loss - MRPL22 ENSG00000082515 UTR3 Human protein_coding chr5:154347919 chr5:154347923 . . 0 25 hm5C_associated_SNPs_85026 0 0 0 3 154347899 154347924 mRNA hsa-miR-145 MRPL22 miRanda miRanda
6829 chr18 48257224 48257224 1 + G A rs538229219 48257221 + 48257201 48257241 41 CAGCGCCTCTCCAGACCTACCTCGGGACCTAATGTTCTCTA CAGCGCCTCTCCAGACCTACCTCAGGACCTAATGTTCTCTA < 41bp 0.722489280914556 0.506796068967299 0.02418378 0.021790296 prediction 0.431386423894513 Functional Loss - MAPK4 ENSG00000141639 UTR3 Human protein_coding chr18:48257221 chr18:48257224 . . 0 24 hm5C_associated_SNPs_85033 0 0 0 2 48257218 48257240 mRNA hsa-miR-146b-5p MAPK4 miRanda miRanda
6830 chr18 48257224 48257224 1 + G A rs538229219 48257221 + 48257201 48257241 41 CAGCGCCTCTCCAGACCTACCTCGGGACCTAATGTTCTCTA CAGCGCCTCTCCAGACCTACCTCAGGACCTAATGTTCTCTA < 41bp 0.722489280914556 0.506796068967299 0.02418378 0.021790296 prediction 0.431386423894513 Functional Loss - MAPK4 ENSG00000141639 UTR3 Human protein_coding chr18:48257221 chr18:48257224 . . 0 24 hm5C_associated_SNPs_85033 0 0 0 2 48257217 48257240 mRNA hsa-miR-539 MAPK4 miRanda miRanda
6831 chr6 114225781 114225781 1 + G T UCEC 114225778 + 114225758 114225798 41 CCTTTGTTTATCCGAGGCGCCAAGATCCCACTGTGAAGTCT CCTTTGTTTATCCGAGGCGCCAATATCCCACTGTGAAGTCT < 41bp 0.715691577913485 0.354826249605205 0.13983369 0.010997981 prediction 0.431383155826971 Functional Loss - FLJ34503 ENSG00000175967 ncRNA_exonic Human antisense chr6:114225778 chr6:114225781 . . 0 24 hm5C_associated_SNPs_85034 0 0 0 3 114225774 114225794 mRNA hsa-miR-27a FLJ34503 miRanda miRanda
6832 chr6 114225781 114225781 1 + G T UCEC 114225778 + 114225758 114225798 41 CCTTTGTTTATCCGAGGCGCCAAGATCCCACTGTGAAGTCT CCTTTGTTTATCCGAGGCGCCAATATCCCACTGTGAAGTCT < 41bp 0.715691577913485 0.354826249605205 0.13983369 0.010997981 prediction 0.431383155826971 Functional Loss - FLJ34503 ENSG00000175967 ncRNA_exonic Human antisense chr6:114225778 chr6:114225781 . . 0 24 hm5C_associated_SNPs_85034 0 0 0 3 114225774 114225794 mRNA hsa-miR-27b FLJ34503 miRanda miRanda
6833 chr6 114225781 114225781 1 + G T UCEC 114225778 + 114225758 114225798 41 CCTTTGTTTATCCGAGGCGCCAAGATCCCACTGTGAAGTCT CCTTTGTTTATCCGAGGCGCCAATATCCCACTGTGAAGTCT < 41bp 0.715691577913485 0.354826249605205 0.13983369 0.010997981 prediction 0.431383155826971 Functional Loss - FLJ34503 ENSG00000175967 ncRNA_exonic Human antisense chr6:114225778 chr6:114225781 . . 0 24 hm5C_associated_SNPs_85034 0 0 0 3 114225770 114225793 mRNA hsa-miR-128 FLJ34503 miRanda miRanda
6834 chr6 41029358 41029358 1 + G A SKCM 41029355 + 41029335 41029375 41 CGCATTATCAAAACCCTTAGCAAGACCAAGAACCTGCGTCT CGCATTATCAAAACCCTTAGCAAAACCAAGAACCTGCGTCT < 41bp 0.80577507759474 0.590090047366093 0.24334359 0.18520519 prediction 0.431370060457294 Functional Loss - APOBEC2 ENSG00000124701 CDS Human protein_coding chr6:41029355 chr6:41029358 synonymous SNV . 0 24 hm5C_associated_SNPs_85038 0 0 0 1 41029341 41029361 mRNA hsa-miR-431 APOBEC2 miRanda miRanda
6835 chr11 17316912 17316912 1 + G A LUAD 17316909 + 17316889 17316929 41 CTGCTACAGTATTGCTTTCTCTTGATTACATGTTTACTTAC CTGCTACAGTATTGCTTTCTCTTAATTACATGTTTACTTAC < 41bp 0.72858202517204 0.512935710772835 0.06389579 0.051862597 prediction 0.431292628798411 Functional Loss - NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17316909 chr11:17316912 synonymous SNV . 0 24 hm5C_associated_SNPs_85061 0 0 1 6 17316903 17316926 mRNA hsa-miR-30a NUCB2 miRanda miRanda
6836 chr11 17316912 17316912 1 + G A LUAD 17316909 + 17316889 17316929 41 CTGCTACAGTATTGCTTTCTCTTGATTACATGTTTACTTAC CTGCTACAGTATTGCTTTCTCTTAATTACATGTTTACTTAC < 41bp 0.72858202517204 0.512935710772835 0.06389579 0.051862597 prediction 0.431292628798411 Functional Loss - NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17316909 chr11:17316912 synonymous SNV . 0 24 hm5C_associated_SNPs_85061 0 0 1 6 17316904 17316926 mRNA hsa-miR-30c NUCB2 miRanda miRanda
6837 chr11 17316912 17316912 1 + G A LUAD 17316909 + 17316889 17316929 41 CTGCTACAGTATTGCTTTCTCTTGATTACATGTTTACTTAC CTGCTACAGTATTGCTTTCTCTTAATTACATGTTTACTTAC < 41bp 0.72858202517204 0.512935710772835 0.06389579 0.051862597 prediction 0.431292628798411 Functional Loss - NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17316909 chr11:17316912 synonymous SNV . 0 24 hm5C_associated_SNPs_85061 0 0 1 6 17316905 17316926 mRNA hsa-miR-30d NUCB2 miRanda miRanda
6838 chr11 17316912 17316912 1 + G A LUAD 17316909 + 17316889 17316929 41 CTGCTACAGTATTGCTTTCTCTTGATTACATGTTTACTTAC CTGCTACAGTATTGCTTTCTCTTAATTACATGTTTACTTAC < 41bp 0.72858202517204 0.512935710772835 0.06389579 0.051862597 prediction 0.431292628798411 Functional Loss - NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17316909 chr11:17316912 synonymous SNV . 0 24 hm5C_associated_SNPs_85061 0 0 1 6 17316908 17316926 mRNA hsa-miR-30b NUCB2 miRanda miRanda
6839 chr11 17316912 17316912 1 + G A LUAD 17316909 + 17316889 17316929 41 CTGCTACAGTATTGCTTTCTCTTGATTACATGTTTACTTAC CTGCTACAGTATTGCTTTCTCTTAATTACATGTTTACTTAC < 41bp 0.72858202517204 0.512935710772835 0.06389579 0.051862597 prediction 0.431292628798411 Functional Loss - NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17316909 chr11:17316912 synonymous SNV . 0 24 hm5C_associated_SNPs_85061 0 0 1 6 17316906 17316926 mRNA hsa-miR-30e NUCB2 miRanda miRanda
6840 chr11 17316912 17316912 1 + G A LUAD 17316909 + 17316889 17316929 41 CTGCTACAGTATTGCTTTCTCTTGATTACATGTTTACTTAC CTGCTACAGTATTGCTTTCTCTTAATTACATGTTTACTTAC < 41bp 0.72858202517204 0.512935710772835 0.06389579 0.051862597 prediction 0.431292628798411 Functional Loss - NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17316909 chr11:17316912 synonymous SNV . 0 24 hm5C_associated_SNPs_85061 0 0 1 6 17316891 17316913 mRNA hsa-miR-335 NUCB2 miRanda miRanda
6841 chr19 7712333 7712333 1 + G A COAD 7712330 + 7712310 7712350 41 TATGTCATGGGCGGTGTGGCCATGTCAGAGATGAGGGCCGC TATGTCATGGGCGGTGTGGCCATATCAGAGATGAGGGCCGC < 41bp 0.728807778582117 0.513193906322569 0.5041291 0.3780642 prediction 0.431227744519096 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7712330 chr19:7712333 nonsynonymous SNV 0.963 2 24 hm5C_associated_SNPs_85087 0 0 1 1 7712314 7712335 mRNA hsa-miR-193a-3p STXBP2 miRanda miRanda
6842 chr1 161199675 161199675 1 + C T LUSC 161199672 + 161199652 161199692 41 ACCCGTAGGCCTCATTAATGCTCCGGAGCTCAGCCAGCAGG ACCCGTAGGCCTCATTAATGCTCTGGAGCTCAGCCAGCAGG < 41bp 0.744598618083569 0.529005591645911 0.11189929 0.22490132 prediction 0.431186052875317 Functional Loss - NR1I3 ENSG00000143257 CDS Human protein_coding chr1:161199672 chr1:161199675 nonsynonymous SNV 0.958 5 24 hm5C_associated_SNPs_85101 0 0 1 1 161199662 161199685 mRNA hsa-miR-149 TOMM40L miRanda miRanda
6843 chr16 50067410 50067410 1 + C T UCEC 50067408 + 50067388 50067428 41 AATACACAAGAGAGTAGTTGCACCATCAATGTATCCTTTAC AATACACAAGAGAGTAGTTGCATCATCAATGTATCCTTTAC < 41bp 0.715572421066147 0.437490351487017 0.05493352 0.14490157 prediction 0.431144842132293 Functional Loss - CNEP1R1 ENSG00000205423 CDS Human protein_coding chr16:50067408 chr16:50067410 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_85115 0 0 1 1 50067404 50067417 mRNA hsa-miR-15b TMEM188 miRanda miRanda
6844 chr15 72433102 72433102 1 + G T rs150325250 72433099 + 72433079 72433119 41 GATCAAGGCCTAACTTCATTCAAGACCTAAATATTATGAGA GATCAAGGCCTAACTTCATTCAATACCTAAATATTATGAGA < 41bp 0.715450754192268 0.403463380912263 0.37891224 0.19440806 prediction 0.430901508384535 Functional Loss - SENP8 ENSG00000260173 ncRNA_intronic Human antisense chr15:72433099 chr15:72433102 . . 0 24 hm5C_associated_SNPs_85204 0 0 0 1 72433085 72433105 mRNA hsa-miR-431 SENP8 miRanda miRanda
6845 chr16 22926365 22926365 1 + C T BLCA 22926363 + 22926343 22926383 41 TCGACGCATCTTCAACATGTCCCGAGACACCAAGCTGATCG TCGACGCATCTTCAACATGTCCTGAGACACCAAGCTGATCG < 41bp 0.715442485588426 0.433435873365149 0.049683362 0.06314352 prediction 0.430884971176851 Functional Loss - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926363 chr16:22926365 stopgain 0.999 1 23 hm5C_associated_SNPs_85208 0 0 0 1 22926344 22926365 mRNA hsa-miR-206 HS3ST2 miRanda miRanda
6846 chr12 58016897 58016897 1 + G A LGG 58016894 + 58016874 58016914 41 CGCTGGCCACCACCAATCTACTGGTGGATGCTGGTGGGAAA CGCTGGCCACCACCAATCTACTGATGGATGCTGGTGGGAAA < 41bp 0.715436433055327 0.466615139576048 0.39432794 0.16877678 prediction 0.430872866110655 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58016894 chr12:58016897 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_85215 0 0 1 3 58016883 58016906 mRNA hsa-miR-29a SLC26A10 miRanda miRanda
6847 chr12 58016897 58016897 1 + G A LGG 58016894 + 58016874 58016914 41 CGCTGGCCACCACCAATCTACTGGTGGATGCTGGTGGGAAA CGCTGGCCACCACCAATCTACTGATGGATGCTGGTGGGAAA < 41bp 0.715436433055327 0.466615139576048 0.39432794 0.16877678 prediction 0.430872866110655 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58016894 chr12:58016897 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_85215 0 0 1 3 58016882 58016906 mRNA hsa-miR-29b SLC26A10 miRanda miRanda
6848 chr12 58016897 58016897 1 + G A LGG 58016894 + 58016874 58016914 41 CGCTGGCCACCACCAATCTACTGGTGGATGCTGGTGGGAAA CGCTGGCCACCACCAATCTACTGATGGATGCTGGTGGGAAA < 41bp 0.715436433055327 0.466615139576048 0.39432794 0.16877678 prediction 0.430872866110655 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58016894 chr12:58016897 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_85215 0 0 1 3 58016883 58016906 mRNA hsa-miR-29c SLC26A10 miRanda miRanda
6849 chr17 37819124 37819124 1 + T C UCEC 37819123 + 37819103 37819143 41 TGTTTGAATTTGCCTTTCACCTGCGACAGCGCATCAGCGAG TGTTTGAATTTGCCTTTCACCCGCGACAGCGCATCAGCGAG < 41bp 0.777479073532568 0.562060327343849 0.38731304 0.43691158 prediction 0.430837492377438 Functional Loss - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37819123 chr17:37819124 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_85225 0 0 1 1 37819105 37819126 mRNA hsa-miR-125a-3p STARD3 miRanda miRanda
6850 chr12 51636328 51636328 1 + G T UCEC 51636326 + 51636306 51636346 41 ACTGCTTTAGTCATATTAACCTGAAGTTGCAGTTTAGACAC ACTGCTTTAGTCATATTAACCTTAAGTTGCAGTTTAGACAC < 41bp 0.878855460524339 0.663441243623351 0.045903772 0.012278378 prediction 0.430828433801976 Functional Loss - DAZAP2 ENSG00000183283 CDS Human protein_coding chr12:51636326 chr12:51636328 synonymous SNV . 0 23 hm5C_associated_SNPs_85229 0 0 1 1 51636307 51636328 mRNA hsa-miR-154 DAZAP2 miRanda miRanda
6851 chr19 55019130 55019130 1 + C T BLCA 55019128 + 55019108 55019148 41 GCCCTTCCCAGACCCTCCATCTCGGCTGAGCCAGGCACTGT GCCCTTCCCAGACCCTCCATCTTGGCTGAGCCAGGCACTGT < 41bp 0.818337406934142 0.602934921580199 0.17254406 0.21485832 prediction 0.430804970707884 Functional Loss - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019128 chr19:55019130 nonsynonymous SNV 0.011 0 23 hm5C_associated_SNPs_85236 0 0 0 2 55019119 55019140 mRNA hsa-miR-24 LAIR2 miRanda miRanda
6852 chr19 55019130 55019130 1 + C T BLCA 55019128 + 55019108 55019148 41 GCCCTTCCCAGACCCTCCATCTCGGCTGAGCCAGGCACTGT GCCCTTCCCAGACCCTCCATCTTGGCTGAGCCAGGCACTGT < 41bp 0.818337406934142 0.602934921580199 0.17254406 0.21485832 prediction 0.430804970707884 Functional Loss - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019128 chr19:55019130 nonsynonymous SNV 0.011 0 23 hm5C_associated_SNPs_85236 0 0 0 2 55019120 55019142 mRNA hsa-miR-149 LAIR2 miRanda miRanda
6853 chr16 31501830 31501830 1 - G A COAD 31501832 - 31501812 31501852 41 GCATAGAAGCCCCAGAGGAACACGGCCACTGCCATCATGAG GCATAGAAGCCCCAGAGGAACATGGCCACTGCCATCATGAG < 41bp 0.785582154009713 0.570198475348924 0.085048884 0.07714763 prediction 0.430767357321576 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31501832 chr16:31501830 nonsynonymous SNV 0.194 2 23 hm5C_associated_SNPs_85251 0 0 1 4 31501819 31501840 mRNA hsa-miR-34a C16orf58 miRanda miRanda
6854 chr16 31501830 31501830 1 - G A COAD 31501832 - 31501812 31501852 41 GCATAGAAGCCCCAGAGGAACACGGCCACTGCCATCATGAG GCATAGAAGCCCCAGAGGAACATGGCCACTGCCATCATGAG < 41bp 0.785582154009713 0.570198475348924 0.085048884 0.07714763 prediction 0.430767357321576 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31501832 chr16:31501830 nonsynonymous SNV 0.194 2 23 hm5C_associated_SNPs_85251 0 0 1 4 31501819 31501841 mRNA hsa-miR-34c-5p C16orf58 miRanda miRanda
6855 chr16 31501830 31501830 1 - G A COAD 31501832 - 31501812 31501852 41 GCATAGAAGCCCCAGAGGAACACGGCCACTGCCATCATGAG GCATAGAAGCCCCAGAGGAACATGGCCACTGCCATCATGAG < 41bp 0.785582154009713 0.570198475348924 0.085048884 0.07714763 prediction 0.430767357321576 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31501832 chr16:31501830 nonsynonymous SNV 0.194 2 23 hm5C_associated_SNPs_85251 0 0 1 4 31501819 31501841 mRNA hsa-miR-449a C16orf58 miRanda miRanda
6856 chr16 31501830 31501830 1 - G A COAD 31501832 - 31501812 31501852 41 GCATAGAAGCCCCAGAGGAACACGGCCACTGCCATCATGAG GCATAGAAGCCCCAGAGGAACATGGCCACTGCCATCATGAG < 41bp 0.785582154009713 0.570198475348924 0.085048884 0.07714763 prediction 0.430767357321576 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31501832 chr16:31501830 nonsynonymous SNV 0.194 2 23 hm5C_associated_SNPs_85251 0 0 1 4 31501819 31501841 mRNA hsa-miR-449b C16orf58 miRanda miRanda
6857 chr3 186918524 186918524 1 + G T rs191731459 186918522 + 186918502 186918542 41 TTCCTTTGCTGCCAGGTACACAGGGTCTCTTTTTTTTGTTT TTCCTTTGCTGCCAGGTACACATGGTCTCTTTTTTTTGTTT < 41bp 0.715333829669402 0.387395402224381 0.9214433 0.45181254 prediction 0.430667659338803 Functional Loss - LOC101929106 ENSG00000198491 ncRNA_intronic Human antisense chr3:186918522 chr3:186918524 . . 0 23 hm5C_associated_SNPs_85288 0 0 0 3 186918506 186918528 mRNA hsa-miR-10a RTP1 miRanda miRanda
6858 chr3 186918524 186918524 1 + G T rs191731459 186918522 + 186918502 186918542 41 TTCCTTTGCTGCCAGGTACACAGGGTCTCTTTTTTTTGTTT TTCCTTTGCTGCCAGGTACACATGGTCTCTTTTTTTTGTTT < 41bp 0.715333829669402 0.387395402224381 0.9214433 0.45181254 prediction 0.430667659338803 Functional Loss - LOC101929106 ENSG00000198491 ncRNA_intronic Human antisense chr3:186918522 chr3:186918524 . . 0 23 hm5C_associated_SNPs_85288 0 0 0 3 186918507 186918528 mRNA hsa-miR-10b RTP1 miRanda miRanda
6859 chr3 186918524 186918524 1 + G T rs191731459 186918522 + 186918502 186918542 41 TTCCTTTGCTGCCAGGTACACAGGGTCTCTTTTTTTTGTTT TTCCTTTGCTGCCAGGTACACATGGTCTCTTTTTTTTGTTT < 41bp 0.715333829669402 0.387395402224381 0.9214433 0.45181254 prediction 0.430667659338803 Functional Loss - LOC101929106 ENSG00000198491 ncRNA_intronic Human antisense chr3:186918522 chr3:186918524 . . 0 23 hm5C_associated_SNPs_85288 0 0 0 3 186918510 186918529 mRNA hsa-miR-504 RTP1 miRanda miRanda
6860 chr9 72723222 72723222 1 + C T SKCM 72723219 + 72723199 72723239 41 AGGCTGAGGAATGGAGCTGCCTCCGTTTGGTCTACCAGATA AGGCTGAGGAATGGAGCTGCCTCTGTTTGGTCTACCAGATA < 41bp 0.756743805321294 0.541413841472236 0.25463098 0.13984996 prediction 0.430659927698116 Functional Loss - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72723219 chr9:72723222 nonsynonymous SNV 0.974 4 24 hm5C_associated_SNPs_85290 0 0 0 1 72723218 72723235 mRNA hsa-miR-379 MAMDC2 miRanda miRanda
6861 chr17 53014509 53014509 1 + G A UCEC 53014506 + 53014486 53014526 41 CTGCCCCATCTCAAGATCTCCTCGACCTAAGTCCCAGTCCC CTGCCCCATCTCAAGATCTCCTCAACCTAAGTCCCAGTCCC < 41bp 0.764976243931925 0.549669763150509 0.4739076 0.12759295 prediction 0.430612961562831 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014506 chr17:53014509 nonsynonymous SNV 0.461 0 24 hm5C_associated_SNPs_85315 0 0 1 2 53014502 53014523 mRNA hsa-miR-378 TOM1L1 miRanda miRanda
6862 chr17 53014509 53014509 1 + G A UCEC 53014506 + 53014486 53014526 41 CTGCCCCATCTCAAGATCTCCTCGACCTAAGTCCCAGTCCC CTGCCCCATCTCAAGATCTCCTCAACCTAAGTCCCAGTCCC < 41bp 0.764976243931925 0.549669763150509 0.4739076 0.12759295 prediction 0.430612961562831 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014506 chr17:53014509 nonsynonymous SNV 0.461 0 24 hm5C_associated_SNPs_85315 0 0 1 2 53014501 53014523 mRNA hsa-miR-422a TOM1L1 miRanda miRanda
6863 chr22 21998553 21998553 1 + C T rs141294668 21998551 + 21998531 21998571 41 ACTTTGGGTTTGTAGGGGTCCTCAAGTGCCTTTGTGATTAA ACTTTGGGTTTGTAGGGGTCCTTAAGTGCCTTTGTGATTAA < 41bp 0.715271678167029 0.49256272775343 0.40357083 0.076203465 prediction 0.430543356334057 Functional Loss - SDF2L1 ENSG00000128228 UTR3 Human protein_coding chr22:21998551 chr22:21998553 . . 0 23 hm5C_associated_SNPs_85347 0 0 1 2 21998544 21998563 mRNA hsa-miR-124 SDF2L1 miRanda miRanda
6864 chr22 21998553 21998553 1 + C T rs141294668 21998551 + 21998531 21998571 41 ACTTTGGGTTTGTAGGGGTCCTCAAGTGCCTTTGTGATTAA ACTTTGGGTTTGTAGGGGTCCTTAAGTGCCTTTGTGATTAA < 41bp 0.715271678167029 0.49256272775343 0.40357083 0.076203465 prediction 0.430543356334057 Functional Loss - SDF2L1 ENSG00000128228 UTR3 Human protein_coding chr22:21998551 chr22:21998553 . . 0 23 hm5C_associated_SNPs_85347 0 0 1 2 21998547 21998563 mRNA hsa-miR-506 SDF2L1 miRanda miRanda
6865 chr8 51314808 51314808 1 + G T COAD 51314806 + 51314786 51314826 41 GTTTGCTGCAGGATGGTAACCAGGAGCCTTTCAAAGTGCGG GTTTGCTGCAGGATGGTAACCATGAGCCTTTCAAAGTGCGG < 41bp 0.71524242169905 0.440798094334654 0.890367 0.3508762 prediction 0.4304848433981 Functional Loss - SNTG1 ENSG00000147481 CDS Human protein_coding chr8:51314806 chr8:51314808 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_85371 0 0 0 1 51314799 51314819 mRNA hsa-miR-488 SNTG1 miRanda miRanda
6866 chr6 44114612 44114612 1 + G A OV 44114609 + 44114589 44114629 41 CCTACCCCAACTGCACAGTTCTCGAAGCCCGCCCGTGTTAC CCTACCCCAACTGCACAGTTCTCAAAGCCCGCCCGTGTTAC < 41bp 0.81241601459487 0.597201929249436 0.94347405 0.6235577 prediction 0.430428170690866 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44114609 chr6:44114612 nonsynonymous SNV 0.847 2 24 hm5C_associated_SNPs_85402 0 0 1 2 44114592 44114612 mRNA hsa-miR-146a TMEM63B miRanda miRanda
6867 chr6 44114612 44114612 1 + G A OV 44114609 + 44114589 44114629 41 CCTACCCCAACTGCACAGTTCTCGAAGCCCGCCCGTGTTAC CCTACCCCAACTGCACAGTTCTCAAAGCCCGCCCGTGTTAC < 41bp 0.81241601459487 0.597201929249436 0.94347405 0.6235577 prediction 0.430428170690866 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44114609 chr6:44114612 nonsynonymous SNV 0.847 2 24 hm5C_associated_SNPs_85402 0 0 1 2 44114591 44114612 mRNA hsa-miR-146b-5p TMEM63B miRanda miRanda
6868 chr3 49453180 49453180 1 + C T rs141422153 49453178 + 49453158 49453198 41 TGGCACTATCCAGATGGAGGCACCAAACACCCACATACCTG TGGCACTATCCAGATGGAGGCATCAAACACCCACATACCTG < 41bp 0.740419780813054 0.525227004579023 0.82948244 0.5270943 prediction 0.430385552468062 Functional Loss - TCTA ENSG00000145022 UTR3 Human protein_coding chr3:49453178 chr3:49453180 . . 0 23 hm5C_associated_SNPs_85418 0 0 1 1 49453174 49453194 mRNA hsa-miR-299-3p TCTA miRanda miRanda
6869 chr2 207459597 207459597 1 + G A SKCM 207459594 + 207459574 207459614 41 TAAATATGAGCAGCTGTCCACTCGATTCCAAGGGTAAAGTC TAAATATGAGCAGCTGTCCACTCAATTCCAAGGGTAAAGTC < 41bp 0.774383328827715 0.559192532431317 0.82926095 0.15669984 prediction 0.430381592792797 Functional Loss - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207459594 chr2:207459597 nonsynonymous SNV 0.988 1 24 hm5C_associated_SNPs_85423 0 0 1 1 207459595 207459606 mRNA hsa-miR-205 ADAM23 miRanda miRanda
6870 chr5 112203166 112203166 1 + G T UCEC 112203164 + 112203144 112203184 41 AAAAACAAGGACACAAAAAACAGGAGGTGCTGACCAAAGTC AAAAACAAGGACACAAAAAACATGAGGTGCTGACCAAAGTC < 41bp 0.87815938021993 0.662975019160656 0.7431823 0.21754292 prediction 0.430368722118548 Functional Loss - SRP19 ENSG00000153037 CDS Human protein_coding chr5:112203164 chr5:112203166 stopgain 1.000 1 23 hm5C_associated_SNPs_85424 0 0 1 1 112203159 112203183 mRNA hsa-miR-9 SRP19 miRanda miRanda
6871 chr1 214505378 214505378 1 + G A BLCA 214505375 + 214505355 214505395 41 CAGCACCCCCTAGTGAGCTGCTGGAGATCTGCGAGCTCAGC CAGCACCCCCTAGTGAGCTGCTGAAGATCTGCGAGCTCAGC < 41bp 0.740994035657165 0.525889243722114 0.4431663 0.3302575 prediction 0.430209583870101 Functional Loss - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214505375 chr1:214505378 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_85488 0 0 1 1 214505371 214505395 mRNA hsa-miR-149 SMYD2 miRanda miRanda
6872 chr9 136324225 136324225 1 + G A STAD 136324222 + 136324202 136324242 41 TGAAGGCTCAGGCCAGCCTGCGGGGCCAGTACTGGACCCTC TGAAGGCTCAGGCCAGCCTGCGGAGCCAGTACTGGACCCTC < 41bp 0.763281834223707 0.548200198616959 0.9478655 0.934739 prediction 0.430163271213495 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136324222 chr9:136324225 nonsynonymous SNV 0.659 3 24 hm5C_associated_SNPs_85513 0 0 1 2 136324212 136324232 mRNA hsa-miR-193a-3p ADAMTS13 miRanda miRanda
6873 chr9 136324225 136324225 1 + G A STAD 136324222 + 136324202 136324242 41 TGAAGGCTCAGGCCAGCCTGCGGGGCCAGTACTGGACCCTC TGAAGGCTCAGGCCAGCCTGCGGAGCCAGTACTGGACCCTC < 41bp 0.763281834223707 0.548200198616959 0.9478655 0.934739 prediction 0.430163271213495 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136324222 chr9:136324225 nonsynonymous SNV 0.659 3 24 hm5C_associated_SNPs_85513 0 0 1 2 136324211 136324232 mRNA hsa-miR-193b ADAMTS13 miRanda miRanda
6874 chr12 122669121 122669121 1 + G A BLCA 122669118 + 122669098 122669138 41 AACTTGGAGGGAGCTTGTCCCCAGAGAGGAGGATGTGGTGA AACTTGGAGGGAGCTTGTCCCCAAAGAGGAGGATGTGGTGA < 41bp 0.812339511689022 0.597269590126544 0.57417643 0.25937712 prediction 0.430139843124956 Functional Loss - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122669118 chr12:122669121 nonsynonymous SNV 0.022 0 24 hm5C_associated_SNPs_85523 0 0 0 3 122669118 122669139 mRNA hsa-miR-197 LRRC43 miRanda miRanda
6875 chr12 122669121 122669121 1 + G A BLCA 122669118 + 122669098 122669138 41 AACTTGGAGGGAGCTTGTCCCCAGAGAGGAGGATGTGGTGA AACTTGGAGGGAGCTTGTCCCCAAAGAGGAGGATGTGGTGA < 41bp 0.812339511689022 0.597269590126544 0.57417643 0.25937712 prediction 0.430139843124956 Functional Loss - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122669118 chr12:122669121 nonsynonymous SNV 0.022 0 24 hm5C_associated_SNPs_85523 0 0 0 3 122669102 122669124 mRNA hsa-miR-330-5p LRRC43 miRanda miRanda
6876 chr12 122669121 122669121 1 + G A BLCA 122669118 + 122669098 122669138 41 AACTTGGAGGGAGCTTGTCCCCAGAGAGGAGGATGTGGTGA AACTTGGAGGGAGCTTGTCCCCAAAGAGGAGGATGTGGTGA < 41bp 0.812339511689022 0.597269590126544 0.57417643 0.25937712 prediction 0.430139843124956 Functional Loss - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122669118 chr12:122669121 nonsynonymous SNV 0.022 0 24 hm5C_associated_SNPs_85523 0 0 0 3 122669101 122669124 mRNA hsa-miR-326 LRRC43 miRanda miRanda
6877 chr19 41622241 41622241 1 + G A SKCM 41622238 + 41622218 41622258 41 ACCTGCTGCTGCTTTGCTCCCAAGACATGCTGACTTCTCTC ACCTGCTGCTGCTTTGCTCCCAAAACATGCTGACTTCTCTC < 41bp 0.800302891634069 0.585238162386661 0.75261164 0.46154505 prediction 0.430129458494817 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622238 chr19:41622241 nonsynonymous SNV 0.862 0 24 hm5C_associated_SNPs_85525 0 0 0 1 41622231 41622253 mRNA hsa-miR-15b CYP2F1 miRanda miRanda
6878 chr16 15501906 15501906 1 + G T UCEC 15501903 + 15501883 15501923 41 CAGAGTGGTGACGGCACATTCAAGTCAGCTTTCACCATTTT CAGAGTGGTGACGGCACATTCAATTCAGCTTTCACCATTTT < 41bp 0.715033965715282 0.319969902570344 0.17439643 0.09600037 prediction 0.430067931430565 Functional Loss - MPV17L ENSG00000156968 CDS Human protein_coding chr16:15501903 chr16:15501906 nonsynonymous SNV 0.035 1 24 hm5C_associated_SNPs_85539 0 0 0 4 15501894 15501915 mRNA hsa-miR-320a MPV17L miRanda miRanda
6879 chr16 15501906 15501906 1 + G T UCEC 15501903 + 15501883 15501923 41 CAGAGTGGTGACGGCACATTCAAGTCAGCTTTCACCATTTT CAGAGTGGTGACGGCACATTCAATTCAGCTTTCACCATTTT < 41bp 0.715033965715282 0.319969902570344 0.17439643 0.09600037 prediction 0.430067931430565 Functional Loss - MPV17L ENSG00000156968 CDS Human protein_coding chr16:15501903 chr16:15501906 nonsynonymous SNV 0.035 1 24 hm5C_associated_SNPs_85539 0 0 0 4 15501894 15501915 mRNA hsa-miR-320b MPV17L miRanda miRanda
6880 chr16 15501906 15501906 1 + G T UCEC 15501903 + 15501883 15501923 41 CAGAGTGGTGACGGCACATTCAAGTCAGCTTTCACCATTTT CAGAGTGGTGACGGCACATTCAATTCAGCTTTCACCATTTT < 41bp 0.715033965715282 0.319969902570344 0.17439643 0.09600037 prediction 0.430067931430565 Functional Loss - MPV17L ENSG00000156968 CDS Human protein_coding chr16:15501903 chr16:15501906 nonsynonymous SNV 0.035 1 24 hm5C_associated_SNPs_85539 0 0 0 4 15501896 15501915 mRNA hsa-miR-320c MPV17L miRanda miRanda
6881 chr16 15501906 15501906 1 + G T UCEC 15501903 + 15501883 15501923 41 CAGAGTGGTGACGGCACATTCAAGTCAGCTTTCACCATTTT CAGAGTGGTGACGGCACATTCAATTCAGCTTTCACCATTTT < 41bp 0.715033965715282 0.319969902570344 0.17439643 0.09600037 prediction 0.430067931430565 Functional Loss - MPV17L ENSG00000156968 CDS Human protein_coding chr16:15501903 chr16:15501906 nonsynonymous SNV 0.035 1 24 hm5C_associated_SNPs_85539 0 0 0 4 15501897 15501915 mRNA hsa-miR-320d MPV17L miRanda miRanda
6882 chr17 1658155 1658155 1 + G A rs117803213 1658152 + 1658132 1658172 41 CCCCACGTCAGCTGGGACACCCCGACTTTTGTTTACCAGAG CCCCACGTCAGCTGGGACACCCCAACTTTTGTTTACCAGAG < 41bp 0.794106976695607 0.579080405941268 0.023045927 0.18052164 prediction 0.430053141508678 Functional Loss - SERPINF2 ENSG00000167711 UTR3 Human protein_coding chr17:1658152 chr17:1658155 . . 0 24 hm5C_associated_SNPs_85545 0 0 1 5 1658147 1658168 mRNA hsa-miR-30a SERPINF2 miRanda miRanda
6883 chr17 1658155 1658155 1 + G A rs117803213 1658152 + 1658132 1658172 41 CCCCACGTCAGCTGGGACACCCCGACTTTTGTTTACCAGAG CCCCACGTCAGCTGGGACACCCCAACTTTTGTTTACCAGAG < 41bp 0.794106976695607 0.579080405941268 0.023045927 0.18052164 prediction 0.430053141508678 Functional Loss - SERPINF2 ENSG00000167711 UTR3 Human protein_coding chr17:1658152 chr17:1658155 . . 0 24 hm5C_associated_SNPs_85545 0 0 1 5 1658146 1658168 mRNA hsa-miR-30c SERPINF2 miRanda miRanda
6884 chr17 1658155 1658155 1 + G A rs117803213 1658152 + 1658132 1658172 41 CCCCACGTCAGCTGGGACACCCCGACTTTTGTTTACCAGAG CCCCACGTCAGCTGGGACACCCCAACTTTTGTTTACCAGAG < 41bp 0.794106976695607 0.579080405941268 0.023045927 0.18052164 prediction 0.430053141508678 Functional Loss - SERPINF2 ENSG00000167711 UTR3 Human protein_coding chr17:1658152 chr17:1658155 . . 0 24 hm5C_associated_SNPs_85545 0 0 1 5 1658147 1658168 mRNA hsa-miR-30d SERPINF2 miRanda miRanda
6885 chr17 1658155 1658155 1 + G A rs117803213 1658152 + 1658132 1658172 41 CCCCACGTCAGCTGGGACACCCCGACTTTTGTTTACCAGAG CCCCACGTCAGCTGGGACACCCCAACTTTTGTTTACCAGAG < 41bp 0.794106976695607 0.579080405941268 0.023045927 0.18052164 prediction 0.430053141508678 Functional Loss - SERPINF2 ENSG00000167711 UTR3 Human protein_coding chr17:1658152 chr17:1658155 . . 0 24 hm5C_associated_SNPs_85545 0 0 1 5 1658147 1658168 mRNA hsa-miR-30b SERPINF2 miRanda miRanda
6886 chr17 1658155 1658155 1 + G A rs117803213 1658152 + 1658132 1658172 41 CCCCACGTCAGCTGGGACACCCCGACTTTTGTTTACCAGAG CCCCACGTCAGCTGGGACACCCCAACTTTTGTTTACCAGAG < 41bp 0.794106976695607 0.579080405941268 0.023045927 0.18052164 prediction 0.430053141508678 Functional Loss - SERPINF2 ENSG00000167711 UTR3 Human protein_coding chr17:1658152 chr17:1658155 . . 0 24 hm5C_associated_SNPs_85545 0 0 1 5 1658147 1658168 mRNA hsa-miR-30e SERPINF2 miRanda miRanda
6887 chr14 100995459 100995459 1 + G A STAD 100995456 + 100995436 100995476 41 ACCCGAGAGAGCCCGTGTTCCTGGCACAGACCAATGGCAAC ACCCGAGAGAGCCCGTGTTCCTGACACAGACCAATGGCAAC < 41bp 0.714984335271839 0.472334013858743 0.533859 0.37194836 prediction 0.429968670543678 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100995456 chr14:100995459 nonsynonymous SNV 0.968 3 24 hm5C_associated_SNPs_85570 0 0 0 1 100995440 100995459 mRNA hsa-miR-873 WDR25 miRanda miRanda
6888 chr22 37965099 37965099 1 + C T rs143128226 37965097 + 37965077 37965117 41 GCCCCACTCCATGCCACCCCCACCAGCTGGAGGACCCAGCC GCCCCACTCCATGCCACCCCCATCAGCTGGAGGACCCAGCC < 41bp 0.784430260366305 0.56945443460367 0.571381 0.21528694 prediction 0.429951651525271 Functional Loss - CDC42EP1 ENSG00000128283 UTR3 Human protein_coding chr22:37965097 chr22:37965099 . . 0 23 hm5C_associated_SNPs_85582 0 0 1 1 37965099 37965120 mRNA hsa-miR-485-5p CDC42EP1 miRanda miRanda
6889 chr16 2258788 2258788 1 + G A SKCM 2258785 + 2258765 2258805 41 TCGGACAACCTGGCCCGGCTCTGGTGTGTGGAGACTGGAGA TCGGACAACCTGGCCCGGCTCTGATGTGTGGAGACTGGAGA < 41bp 0.767121095541762 0.552146835487929 0.43319914 0.24473816 prediction 0.429948520107666 Functional Loss - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2258785 chr16:2258788 stopgain 1.000 0 24 hm5C_associated_SNPs_85584 0 0 1 2 2258773 2258794 mRNA hsa-miR-362-3p MLST8 miRanda miRanda
6890 chr16 2258788 2258788 1 + G A SKCM 2258785 + 2258765 2258805 41 TCGGACAACCTGGCCCGGCTCTGGTGTGTGGAGACTGGAGA TCGGACAACCTGGCCCGGCTCTGATGTGTGGAGACTGGAGA < 41bp 0.767121095541762 0.552146835487929 0.43319914 0.24473816 prediction 0.429948520107666 Functional Loss - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2258785 chr16:2258788 stopgain 1.000 0 24 hm5C_associated_SNPs_85584 0 0 1 2 2258773 2258794 mRNA hsa-miR-329 MLST8 miRanda miRanda
6891 chr17 48560746 48560746 1 + G A OV 48560743 + 48560723 48560763 41 CCAGGGGGCTGGAGGCCACACCCGGGAGGCTCGGATCCAGA CCAGGGGGCTGGAGGCCACACCCAGGAGGCTCGGATCCAGA < 41bp 0.807268032022243 0.592298999486918 0.54919493 0.0462566 prediction 0.429938065070649 Functional Loss - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48560743 chr17:48560746 nonsynonymous SNV 0.758 3 24 hm5C_associated_SNPs_85589 0 0 1 1 48560732 48560757 mRNA hsa-miR-615-3p RSAD1 miRanda miRanda
6892 chr9 112932182 112932182 1 + G A rs12340651 112932179 + 112932159 112932199 41 CCAGAGCTGTTTGCTGGCTTCAGGAGTGGAGTGAGAATTTC CCAGAGCTGTTTGCTGGCTTCAGAAGTGGAGTGAGAATTTC < 41bp 0.751275382835758 0.536370234031456 0.24697784 0.25778538 prediction 0.429810297608604 Functional Loss - AKAP2;PALM2-AKAP2 ENSG00000157654;ENSG00000241978 UTR3 Human other chr9:112932179 chr9:112932182 . . 0 24 hm5C_associated_SNPs_85635 0 0 1 2 112932181 112932203 mRNA hsa-miR-186 AKAP2 miRanda miRanda
6893 chr9 112932182 112932182 1 + G A rs12340651 112932179 + 112932159 112932199 41 CCAGAGCTGTTTGCTGGCTTCAGGAGTGGAGTGAGAATTTC CCAGAGCTGTTTGCTGGCTTCAGAAGTGGAGTGAGAATTTC < 41bp 0.751275382835758 0.536370234031456 0.24697784 0.25778538 prediction 0.429810297608604 Functional Loss - AKAP2;PALM2-AKAP2 ENSG00000157654;ENSG00000241978 UTR3 Human other chr9:112932179 chr9:112932182 . . 0 24 hm5C_associated_SNPs_85635 0 0 1 2 112932181 112932203 mRNA hsa-miR-186 PALM2-AKAP2 miRanda miRanda
6894 chr11 18290819 18290819 1 + C T CESC 18290817 + 18290797 18290837 41 CTCAGACAAATACTTCCATGCTCGGGGGAACTATGATGCTG CTCAGACAAATACTTCCATGCTTGGGGGAACTATGATGCTG < 41bp 0.855313128904408 0.640416428823869 0.0664981 0.064739645 prediction 0.429793400161078 Functional Loss - SAA1 ENSG00000173432 CDS Human protein_coding chr11:18290817 chr11:18290819 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_85639 0 0 0 2 18290817 18290839 mRNA hsa-miR-103 SAA1 miRanda miRanda
6895 chr11 18290819 18290819 1 + C T CESC 18290817 + 18290797 18290837 41 CTCAGACAAATACTTCCATGCTCGGGGGAACTATGATGCTG CTCAGACAAATACTTCCATGCTTGGGGGAACTATGATGCTG < 41bp 0.855313128904408 0.640416428823869 0.0664981 0.064739645 prediction 0.429793400161078 Functional Loss - SAA1 ENSG00000173432 CDS Human protein_coding chr11:18290817 chr11:18290819 nonsynonymous SNV 0.992 3 23 hm5C_associated_SNPs_85639 0 0 0 2 18290817 18290839 mRNA hsa-miR-107 SAA1 miRanda miRanda
6896 chr7 105641949 105641949 1 + G A SKCM 105641946 + 105641926 105641966 41 AGTCCTGGAGGAACTGAGTCCAGGAACCATCGTGGCCAATA AGTCCTGGAGGAACTGAGTCCAGAAACCATCGTGGCCAATA < 41bp 0.714843490031359 0.476311425063039 0.8173274 0.52835053 prediction 0.429686980062718 Functional Loss - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105641946 chr7:105641949 nonsynonymous SNV 0.150 4 24 hm5C_associated_SNPs_85691 0 0 0 3 105641926 105641949 mRNA hsa-miR-149 CDHR3 miRanda miRanda
6897 chr7 105641949 105641949 1 + G A SKCM 105641946 + 105641926 105641966 41 AGTCCTGGAGGAACTGAGTCCAGGAACCATCGTGGCCAATA AGTCCTGGAGGAACTGAGTCCAGAAACCATCGTGGCCAATA < 41bp 0.714843490031359 0.476311425063039 0.8173274 0.52835053 prediction 0.429686980062718 Functional Loss - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105641946 chr7:105641949 nonsynonymous SNV 0.150 4 24 hm5C_associated_SNPs_85691 0 0 0 3 105641929 105641949 mRNA hsa-miR-378 CDHR3 miRanda miRanda
6898 chr7 105641949 105641949 1 + G A SKCM 105641946 + 105641926 105641966 41 AGTCCTGGAGGAACTGAGTCCAGGAACCATCGTGGCCAATA AGTCCTGGAGGAACTGAGTCCAGAAACCATCGTGGCCAATA < 41bp 0.714843490031359 0.476311425063039 0.8173274 0.52835053 prediction 0.429686980062718 Functional Loss - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105641946 chr7:105641949 nonsynonymous SNV 0.150 4 24 hm5C_associated_SNPs_85691 0 0 0 3 105641928 105641949 mRNA hsa-miR-422a CDHR3 miRanda miRanda
6899 chr1 52211221 52211221 1 + G T COAD 52211218 + 52211198 52211238 41 CTTTCTCTAGGGTTTGGATTCAGGATTTGTTCCTAGTGTCC CTTTCTCTAGGGTTTGGATTCAGTATTTGTTCCTAGTGTCC < 41bp 0.714826923173398 0.349366765480784 0.42455298 0.10477567 prediction 0.429653846346795 Functional Loss - OSBPL9 ENSG00000117859 CDS Human protein_coding chr1:52211218 chr1:52211221 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_85709 0 0 1 1 52211216 52211241 mRNA hsa-miR-96 OSBPL9 miRanda miRanda
6900 chr1 203277053 203277053 1 + G A rs12085417 203277050 + 203277030 203277070 41 TTACTCAGGGGCATTCATGCCTGGACTTAAACAATACTATG TTACTCAGGGGCATTCATGCCTGAACTTAAACAATACTATG < 41bp 0.719327670246915 0.504662321703918 0.08395389 0.1187478 prediction 0.429330697085994 Functional Loss - BTG2 ENSG00000159388 UTR3 Human protein_coding chr1:203277050 chr1:203277053 . . 0 24 hm5C_associated_SNPs_85828 0 0 1 1 203277032 203277054 mRNA hsa-miR-338-3p BTG2 miRanda miRanda
6901 chr10 73472538 73472538 1 - G A LUSC 73472540 - 73472520 73472560 41 CTGTGGCCTTCAGGGATGTCCTCAGGGACGCTGGCCTCATA CTGTGGCCTTCAGGGATGTCCTTAGGGACGCTGGCCTCATA < 41bp 0.754265302774062 0.539628059456979 0.8695009 0.6446667 prediction 0.429274486634166 Functional Loss - CDH23 ENSG00000107736 CDS Human protein_coding chr10:73472540 chr10:73472538 nonsynonymous SNV 0.976 3 23 hm5C_associated_SNPs_85852 0 0 0 2 73472533 73472554 mRNA hsa-miR-125b C10orf105 miRanda miRanda
6902 chr10 73472538 73472538 1 - G A LUSC 73472540 - 73472520 73472560 41 CTGTGGCCTTCAGGGATGTCCTCAGGGACGCTGGCCTCATA CTGTGGCCTTCAGGGATGTCCTTAGGGACGCTGGCCTCATA < 41bp 0.754265302774062 0.539628059456979 0.8695009 0.6446667 prediction 0.429274486634166 Functional Loss - CDH23 ENSG00000107736 CDS Human protein_coding chr10:73472540 chr10:73472538 nonsynonymous SNV 0.976 3 23 hm5C_associated_SNPs_85852 0 0 0 2 73472533 73472559 mRNA hsa-miR-125a-5p C10orf105 miRanda miRanda
6903 chr15 38991227 38991227 1 + G A rs187290660 38991224 + 38991204 38991244 41 CTGAAGGCTCTCTTCTCAGTCACGGGGGATGGAATTGTTTC CTGAAGGCTCTCTTCTCAGTCACAGGGGATGGAATTGTTTC < 41bp 0.757350498664697 0.542723006139817 0.8015129 0.35368603 prediction 0.429254985049761 Functional Loss - C15orf53 ENSG00000175779 UTR3 Human protein_coding chr15:38991224 chr15:38991227 . . 0 24 hm5C_associated_SNPs_85859 0 0 0 1 38991208 38991227 mRNA hsa-miR-134 C15orf53 miRanda miRanda
6904 chr9 75309495 75309495 1 + G A KICH 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTCAAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.536766472223214 0.3691743 0.09191391 prediction 0.429046825863231 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309495 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_85939 0 0 0 9 75309474 75309495 mRNA hsa-let-7a TMC1 miRanda miRanda
6905 chr9 75309495 75309495 1 + G A KICH 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTCAAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.536766472223214 0.3691743 0.09191391 prediction 0.429046825863231 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309495 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_85939 0 0 0 9 75309474 75309495 mRNA hsa-let-7b TMC1 miRanda miRanda
6906 chr9 75309495 75309495 1 + G A KICH 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTCAAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.536766472223214 0.3691743 0.09191391 prediction 0.429046825863231 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309495 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_85939 0 0 0 9 75309472 75309495 mRNA hsa-let-7c TMC1 miRanda miRanda
6907 chr9 75309495 75309495 1 + G A KICH 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTCAAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.536766472223214 0.3691743 0.09191391 prediction 0.429046825863231 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309495 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_85939 0 0 0 9 75309472 75309495 mRNA hsa-let-7d TMC1 miRanda miRanda
6908 chr9 75309495 75309495 1 + G A KICH 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTCAAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.536766472223214 0.3691743 0.09191391 prediction 0.429046825863231 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309495 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_85939 0 0 0 9 75309474 75309495 mRNA hsa-let-7e TMC1 miRanda miRanda
6909 chr9 75309495 75309495 1 + G A KICH 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTCAAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.536766472223214 0.3691743 0.09191391 prediction 0.429046825863231 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309495 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_85939 0 0 0 9 75309474 75309495 mRNA hsa-let-7f TMC1 miRanda miRanda
6910 chr9 75309495 75309495 1 + G A KICH 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTCAAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.536766472223214 0.3691743 0.09191391 prediction 0.429046825863231 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309495 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_85939 0 0 0 9 75309477 75309495 mRNA hsa-miR-98 TMC1 miRanda miRanda
6911 chr9 75309495 75309495 1 + G A KICH 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTCAAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.536766472223214 0.3691743 0.09191391 prediction 0.429046825863231 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309495 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_85939 0 0 0 9 75309472 75309495 mRNA hsa-let-7g TMC1 miRanda miRanda
6912 chr9 75309495 75309495 1 + G A KICH 75309492 + 75309472 75309512 41 GGAGGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGAC GGAGGTGGAAGATAAGCTACCTCAAAGAGAGAGCTTGAGAC < 41bp 0.75128988515483 0.536766472223214 0.3691743 0.09191391 prediction 0.429046825863231 Functional Loss - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309492 chr9:75309495 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_85939 0 0 0 9 75309472 75309495 mRNA hsa-let-7i TMC1 miRanda miRanda
6913 chr22 24125826 24125826 1 + G A UCEC 24125823 + 24125803 24125843 41 ATCTTTGTGGCTGTGGGCACCAGGCATGGGACTGAGCCCAT ATCTTTGTGGCTGTGGGCACCAGACATGGGACTGAGCCCAT < 41bp 0.798896813436813 0.584380622158417 0.2582186 0.20138025 prediction 0.429032382556792 Functional Loss - MMP11 ENSG00000267954 CDS Human other chr22:24125823 chr22:24125826 nonsynonymous SNV 0.016 0 24 hm5C_associated_SNPs_85946 0 0 1 1 24125820 24125841 mRNA hsa-miR-24 MMP11 miRanda miRanda
6914 chr14 24113673 24113673 1 + T C COAD 24113672 + 24113652 24113692 41 TGCTGGGTCTCACTAGAACACTGGCATTGGAGCTGGCCCCC TGCTGGGTCTCACTAGAACACCGGCATTGGAGCTGGCCCCC < 41bp 0.785667073749315 0.571182893257294 0.127049 0.077207655 prediction 0.428968360984042 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113672 chr14:24113673 nonsynonymous SNV 0.003 4 22 hm5C_associated_SNPs_85987 0 0 1 2 24113653 24113676 mRNA hsa-miR-199a-5p DHRS2 miRanda miRanda
6915 chr14 24113673 24113673 1 + T C COAD 24113672 + 24113652 24113692 41 TGCTGGGTCTCACTAGAACACTGGCATTGGAGCTGGCCCCC TGCTGGGTCTCACTAGAACACCGGCATTGGAGCTGGCCCCC < 41bp 0.785667073749315 0.571182893257294 0.127049 0.077207655 prediction 0.428968360984042 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113672 chr14:24113673 nonsynonymous SNV 0.003 4 22 hm5C_associated_SNPs_85987 0 0 1 2 24113653 24113676 mRNA hsa-miR-199b-5p DHRS2 miRanda miRanda
6916 chr4 89649005 89649005 1 + G A rs143340242 89649002 + 89648982 89649022 41 GCAGATGACCCGGTCCTAGGCAGGGACCAAAATTCCTTGTC GCAGATGACCCGGTCCTAGGCAGAGACCAAAATTCCTTGTC < 41bp 0.717960426351884 0.503509517364648 0.903702 0.82329774 prediction 0.428901817974471 Functional Loss - FAM13A-AS1 ENSG00000248019 ncRNA_exonic Human antisense chr4:89649002 chr4:89649005 . . 0 24 hm5C_associated_SNPs_86013 0 0 0 2 89648991 89649012 mRNA hsa-miR-133a FAM13AOS miRanda miRanda
6917 chr4 89649005 89649005 1 + G A rs143340242 89649002 + 89648982 89649022 41 GCAGATGACCCGGTCCTAGGCAGGGACCAAAATTCCTTGTC GCAGATGACCCGGTCCTAGGCAGAGACCAAAATTCCTTGTC < 41bp 0.717960426351884 0.503509517364648 0.903702 0.82329774 prediction 0.428901817974471 Functional Loss - FAM13A-AS1 ENSG00000248019 ncRNA_exonic Human antisense chr4:89649002 chr4:89649005 . . 0 24 hm5C_associated_SNPs_86013 0 0 0 2 89648991 89649012 mRNA hsa-miR-133b FAM13AOS miRanda miRanda
6918 chr7 112112906 112112906 1 + G A COAD 112112903 + 112112883 112112923 41 GCTTAAAACGATGAAGATTTCTCGTTTCGAAAGGGTAGGTT GCTTAAAACGATGAAGATTTCTCATTTCGAAAGGGTAGGTT < 41bp 0.714420718397822 0.493096980249211 0.030505806 0.025634319 prediction 0.428841436795644 Functional Loss - IFRD1 ENSG00000006652 CDS Human protein_coding chr7:112112903 chr7:112112906 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_86048 0 0 1 1 112112885 112112906 mRNA hsa-miR-539 IFRD1 miRanda miRanda
6919 chr7 112112905 112112905 1 + C T SKCM 112112903 + 112112883 112112923 41 GCTTAAAACGATGAAGATTTCTCGTTTCGAAAGGGTAGGTT GCTTAAAACGATGAAGATTTCTTGTTTCGAAAGGGTAGGTT < 41bp 0.714420718397822 0.428647387327071 0.030505806 0.033852845 prediction 0.428841436795644 Functional Loss - IFRD1 ENSG00000006652 CDS Human protein_coding chr7:112112903 chr7:112112905 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_86049 0 0 1 1 112112885 112112906 mRNA hsa-miR-539 IFRD1 miRanda miRanda
6920 chr7 100468072 100468072 1 + C T UCEC 100468069 + 100468049 100468089 41 CACGACATGAACCACCCGCCCAGCGGGGAGTACTTTGGTGA CACGACATGAACCACCCGCCCAGTGGGGAGTACTTTGGTGA < 41bp 0.716375190816453 0.501971743575718 0.6976861 0.46311408 prediction 0.42880689448147 Functional Loss - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100468069 chr7:100468072 synonymous SNV . 0 24 hm5C_associated_SNPs_86062 0 0 1 1 100468071 100468085 mRNA hsa-miR-193a-3p TRIP6 miRanda miRanda
6921 chr12 95694210 95694210 1 + C T LUAD 95694208 + 95694188 95694228 41 ATGTGAGAGTGAAGATGAACCACAAGCAGATGGAAGTGGTC ATGTGAGAGTGAAGATGAACCATAAGCAGATGGAAGTGGTC < 41bp 0.714360073125646 0.458129247459503 0.007628888 0.003344506 prediction 0.428720146251291 Functional Loss - VEZT ENSG00000028203 CDS Human protein_coding chr12:95694208 chr12:95694210 stopgain 0.002 0 23 hm5C_associated_SNPs_86100 0 0 1 1 95694189 95694214 mRNA hsa-miR-9 VEZT miRanda miRanda
6922 chr11 85975253 85975253 1 + T C SKCM 85975252 + 85975232 85975272 41 GGAATATCCAGACGGACACTCTGGTGGCAATATTTGGAGGC GGAATATCCAGACGGACACTCCGGTGGCAATATTTGGAGGC < 41bp 0.714254429609775 0.466003394640433 0.49688026 0.7262645 prediction 0.42850885921955 Functional Loss - EED ENSG00000074266 CDS Human protein_coding chr11:85975252 chr11:85975253 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_86189 0 0 1 2 85975239 85975263 mRNA hsa-miR-25 EED miRanda miRanda
6923 chr11 85975253 85975253 1 + T C SKCM 85975252 + 85975232 85975272 41 GGAATATCCAGACGGACACTCTGGTGGCAATATTTGGAGGC GGAATATCCAGACGGACACTCCGGTGGCAATATTTGGAGGC < 41bp 0.714254429609775 0.466003394640433 0.49688026 0.7262645 prediction 0.42850885921955 Functional Loss - EED ENSG00000074266 CDS Human protein_coding chr11:85975252 chr11:85975253 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_86189 0 0 1 2 85975238 85975263 mRNA hsa-miR-363 EED miRanda miRanda
6924 chr15 57910263 57910263 1 + G A SKCM 57910260 + 57910240 57910280 41 CTGAGCAATGGAGAACCTACCAGGAAACTTCCTCAGGGTGT CTGAGCAATGGAGAACCTACCAGAAAACTTCCTCAGGGTGT < 41bp 0.791695476059827 0.577478734812269 0.8954519 0.7695795 prediction 0.428433482495117 Functional Loss - GCOM1;MYZAP ENSG00000137878;ENSG00000263155 CDS Human other chr15:57910260 chr15:57910263 synonymous SNV . 0 24 hm5C_associated_SNPs_86219 0 0 0 2 57910257 57910278 mRNA hsa-miR-125b GCOM1 miRanda miRanda
6925 chr15 57910263 57910263 1 + G A SKCM 57910260 + 57910240 57910280 41 CTGAGCAATGGAGAACCTACCAGGAAACTTCCTCAGGGTGT CTGAGCAATGGAGAACCTACCAGAAAACTTCCTCAGGGTGT < 41bp 0.791695476059827 0.577478734812269 0.8954519 0.7695795 prediction 0.428433482495117 Functional Loss - GCOM1;MYZAP ENSG00000137878;ENSG00000263155 CDS Human other chr15:57910260 chr15:57910263 synonymous SNV . 0 24 hm5C_associated_SNPs_86219 0 0 0 2 57910257 57910278 mRNA hsa-miR-125a-5p GCOM1 miRanda miRanda
6926 chr6 12296235 12296235 1 + G A SKCM 12296232 + 12296212 12296252 41 ACAGCGTCAAATCATCTTTTCATGATCCCAAGCTGAAAGGC ACAGCGTCAAATCATCTTTTCATAATCCCAAGCTGAAAGGC < 41bp 0.746317463335586 0.532137789798502 0.2430239 0.19592163 prediction 0.428359347074169 Functional Loss - EDN1 ENSG00000078401 CDS Human protein_coding chr6:12296232 chr6:12296235 nonsynonymous SNV 0.004 2 24 hm5C_associated_SNPs_86253 0 0 0 1 12296216 12296239 mRNA hsa-miR-383 EDN1 miRanda miRanda
6927 chr19 7705825 7705825 1 + G A rs144914451 7705822 + 7705802 7705842 41 GTTCAGTGAGCTAGGCCGCTCTCGTCTGGCAAAGGTGGTGA GTTCAGTGAGCTAGGCCGCTCTCATCTGGCAAAGGTGGTGA < 41bp 0.714160054353327 0.473043541575184 0.36141682 0.169294 prediction 0.428320108706654 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7705822 chr19:7705825 nonsynonymous SNV 0.785 1 24 hm5C_associated_SNPs_86265 0 0 1 1 7705822 7705843 mRNA hsa-miR-197 STXBP2 miRanda miRanda
6928 chr3 116435498 116435498 1 + G A rs111825859 116435495 + 116435475 116435515 41 AAGAAAACACTGCCTATGTGCACGACTCAGCAGCCTGGACA AAGAAAACACTGCCTATGTGCACAACTCAGCAGCCTGGACA < 41bp 0.714147193430603 0.497285476018933 0.017793566 0.016986102 prediction 0.428294386861207 Functional Loss - TUSC7 ENSG00000243197 ncRNA_exonic Human antisense chr3:116435495 chr3:116435498 . . 0 24 hm5C_associated_SNPs_86283 0 0 0 1 116435496 116435519 mRNA hsa-miR-22 LOC285194 miRanda miRanda
6929 chr11 105804627 105804627 1 + G A rs116431428 105804624 + 105804604 105804644 41 GAGCAGCGAAAGCCATGTGACACGATGAAAGTGGGAGGAAA GAGCAGCGAAAGCCATGTGACACAATGAAAGTGGGAGGAAA < 41bp 0.714091395031321 0.496151854779075 0.20685524 0.157451 prediction 0.428182790062641 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105804624 chr11:105804627 synonymous SNV . 0 24 hm5C_associated_SNPs_86338 0 0 0 2 105804603 105804628 mRNA hsa-miR-187 GRIA4 miRanda miRanda
6930 chr11 105804627 105804627 1 + G A rs116431428 105804624 + 105804604 105804644 41 GAGCAGCGAAAGCCATGTGACACGATGAAAGTGGGAGGAAA GAGCAGCGAAAGCCATGTGACACAATGAAAGTGGGAGGAAA < 41bp 0.714091395031321 0.496151854779075 0.20685524 0.157451 prediction 0.428182790062641 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105804624 chr11:105804627 synonymous SNV . 0 24 hm5C_associated_SNPs_86338 0 0 0 2 105804620 105804641 mRNA hsa-miR-150 GRIA4 miRanda miRanda
6931 chr11 105804626 105804626 1 + C T UCEC 105804624 + 105804604 105804644 41 GAGCAGCGAAAGCCATGTGACACGATGAAAGTGGGAGGAAA GAGCAGCGAAAGCCATGTGACATGATGAAAGTGGGAGGAAA < 41bp 0.714091395031321 0.42435638348035 0.20685524 0.12947947 prediction 0.428182790062641 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105804624 chr11:105804626 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_86339 0 0 0 2 105804603 105804628 mRNA hsa-miR-187 GRIA4 miRanda miRanda
6932 chr11 105804626 105804626 1 + C T UCEC 105804624 + 105804604 105804644 41 GAGCAGCGAAAGCCATGTGACACGATGAAAGTGGGAGGAAA GAGCAGCGAAAGCCATGTGACATGATGAAAGTGGGAGGAAA < 41bp 0.714091395031321 0.42435638348035 0.20685524 0.12947947 prediction 0.428182790062641 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105804624 chr11:105804626 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_86339 0 0 0 2 105804620 105804641 mRNA hsa-miR-150 GRIA4 miRanda miRanda
6933 chr1 153633803 153633803 1 + A C rs16835489 153633802 + 153633782 153633822 41 TGAGCCTATGGACTCAGTAGCACAAGTACTGTTCCCCAGCT TGAGCCTATGGACTCAGTAGCCCAAGTACTGTTCCCCAGCT < 41bp 0.817979994996798 0.603926864515239 0.3340795 0.24465936 prediction 0.428106260963117 Functional Loss - SNAPIN ENSG00000143553 UTR3 Human protein_coding chr1:153633802 chr1:153633803 . . 0 22 hm5C_associated_SNPs_86375 0 0 1 1 153633794 153633814 mRNA hsa-miR-101 SNAPIN miRanda miRanda
6934 chr5 7895863 7895863 1 + G A UCEC 7895860 + 7895840 7895880 41 ATTTCAGATATCCATCTCTCCTCGAACAACAAATTCTTTCC ATTTCAGATATCCATCTCTCCTCAAACAACAAATTCTTTCC < 41bp 0.742158547351853 0.528134200430697 0.87673163 0.13856661 prediction 0.42804869384231 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7895860 chr5:7895863 nonsynonymous SNV 0.340 3 24 hm5C_associated_SNPs_86396 0 0 1 2 7895858 7895879 mRNA hsa-miR-186 MTRR miRanda miRanda
6935 chr5 7895863 7895863 1 + G A UCEC 7895860 + 7895840 7895880 41 ATTTCAGATATCCATCTCTCCTCGAACAACAAATTCTTTCC ATTTCAGATATCCATCTCTCCTCAAACAACAAATTCTTTCC < 41bp 0.742158547351853 0.528134200430697 0.87673163 0.13856661 prediction 0.42804869384231 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7895860 chr5:7895863 nonsynonymous SNV 0.340 3 24 hm5C_associated_SNPs_86396 0 0 1 2 7895848 7895869 mRNA hsa-miR-375 MTRR miRanda miRanda
6936 chr19 45567345 45567345 1 + G A UCEC 45567342 + 45567322 45567362 41 CCGGGCCGCGAGGAGAAGATCACGTTCATCACCAGTTTTGG CCGGGCCGCGAGGAGAAGATCACATTCATCACCAGTTTTGG < 41bp 0.714005405933631 0.46723932305015 0.8087517 0.4794919 prediction 0.428010811867261 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45567342 chr19:45567345 synonymous SNV . 0 24 hm5C_associated_SNPs_86408 0 0 1 1 45567323 45567346 mRNA hsa-miR-187 SFRS16 miRanda miRanda
6937 chr19 45567344 45567344 1 + C T UCEC 45567342 + 45567322 45567362 41 CCGGGCCGCGAGGAGAAGATCACGTTCATCACCAGTTTTGG CCGGGCCGCGAGGAGAAGATCATGTTCATCACCAGTTTTGG < 41bp 0.714005405933631 0.461297640193036 0.8087517 0.71826786 prediction 0.428010811867261 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45567342 chr19:45567344 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_86409 0 0 1 1 45567323 45567346 mRNA hsa-miR-187 SFRS16 miRanda miRanda
6938 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558487 56558510 mRNA hsa-miR-17 GPBP1 miRanda miRanda
6939 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558487 56558510 mRNA hsa-miR-20a GPBP1 miRanda miRanda
6940 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558487 56558510 mRNA hsa-miR-93 GPBP1 miRanda miRanda
6941 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558487 56558510 mRNA hsa-miR-106a GPBP1 miRanda miRanda
6942 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558490 56558510 mRNA hsa-miR-106b GPBP1 miRanda miRanda
6943 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558482 56558509 mRNA hsa-miR-302a GPBP1 miRanda miRanda
6944 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558482 56558509 mRNA hsa-miR-302b GPBP1 miRanda miRanda
6945 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558482 56558509 mRNA hsa-miR-302c GPBP1 miRanda miRanda
6946 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558482 56558509 mRNA hsa-miR-302d GPBP1 miRanda miRanda
6947 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558487 56558509 mRNA hsa-miR-372 GPBP1 miRanda miRanda
6948 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558487 56558509 mRNA hsa-miR-373 GPBP1 miRanda miRanda
6949 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558487 56558510 mRNA hsa-miR-20b GPBP1 miRanda miRanda
6950 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558492 56558512 mRNA hsa-miR-488 GPBP1 miRanda miRanda
6951 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558488 56558509 mRNA hsa-miR-520e GPBP1 miRanda miRanda
6952 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558488 56558509 mRNA hsa-miR-520a-3p GPBP1 miRanda miRanda
6953 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558488 56558509 mRNA hsa-miR-520b GPBP1 miRanda miRanda
6954 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558487 56558509 mRNA hsa-miR-520c-3p GPBP1 miRanda miRanda
6955 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558489 56558510 mRNA hsa-miR-519d GPBP1 miRanda miRanda
6956 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558488 56558509 mRNA hsa-miR-520d-3p GPBP1 miRanda miRanda
6957 chr5 56558503 56558503 1 + G T UCEC 56558501 + 56558481 56558521 41 AAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAAC AAGTTTGGACCGTGGAAGAACATCACTTTCAAACCCACAAC < 41bp 0.713945411701655 0.414974395583061 0.21557307 0.21027693 prediction 0.42789082340331 Functional Loss - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56558501 chr5:56558503 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_86452 0 0 1 20 56558492 56558509 mRNA hsa-miR-302e GPBP1 miRanda miRanda
6958 chr13 70681759 70681759 1 + G T LUSC 70681757 + 70681737 70681777 41 GGGCCGCCGGTGGAAGGAGACGGGTGGCTGAAGAGTTTCCA GGGCCGCCGGTGGAAGGAGACGTGTGGCTGAAGAGTTTCCA < 41bp 0.915890434601718 0.701984421910341 0.8848656 0.40822738 prediction 0.427812025382753 Functional Loss - KLHL1 ENSG00000150361 CDS Human protein_coding chr13:70681757 chr13:70681759 nonsynonymous SNV 0.872 4 23 hm5C_associated_SNPs_86480 0 0 0 1 70681745 70681768 mRNA hsa-miR-197 ATXN8OS miRanda miRanda
6959 chr10 81682448 81682448 1 + G A rs41309986 81682445 + 81682425 81682465 41 CTTCTCCTTGGGGAAAATGTCTGGGAAGAAGCTTTTCGTGA CTTCTCCTTGGGGAAAATGTCTGAGAAGAAGCTTTTCGTGA < 41bp 0.713895843535132 0.490920507329532 0.25851673 0.08311945 prediction 0.427791687070263 Functional Loss - MBL1P ENSG00000242600 ncRNA_exonic Human transcribed_unitary_pseudogene chr10:81682445 chr10:81682448 . . 0 24 hm5C_associated_SNPs_86488 0 0 0 1 81682447 81682470 mRNA hsa-miR-96 MBL1P miRanda miRanda
6960 chr14 77319640 77319640 1 + C T BLCA 77319637 + 77319617 77319657 41 CTCTGGCCCTAGGGGAAGTCCTCCGACTCAACCGCTGCCTG CTCTGGCCCTAGGGGAAGTCCTCTGACTCAACCGCTGCCTG < 41bp 0.748384933057918 0.534553113163841 0.45405468 0.57692194 prediction 0.427663639788153 Functional Loss - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77319637 chr14:77319640 stopgain 0.926 0 24 hm5C_associated_SNPs_86560 0 0 0 1 77319629 77319653 mRNA hsa-miR-296-3p C14orf166B miRanda miRanda
6961 chr15 101455693 101455693 1 + G A rs74696748 101455690 + 101455670 101455710 41 AGCTTAGTCAAAGACGATATCACGGTCTACCTTAACCAAGG AGCTTAGTCAAAGACGATATCACAGTCTACCTTAACCAAGG < 41bp 0.771001065999258 0.557231408286455 0.30945855 0.28744215 prediction 0.427539315425606 Functional Loss - LOC101927751 ENSG00000259583 ncRNA_exonic Human antisense chr15:101455690 chr15:101455693 . . 0 24 hm5C_associated_SNPs_86611 0 0 0 1 101455680 101455701 mRNA hsa-miR-379 ALDH1A3 miRanda miRanda
6962 chr1 156348204 156348204 1 + G A rs113186314 156348201 + 156348181 156348221 41 GCCATGATTGGTGAGGCCTTCGAGGTGCGGTAGCAGGGCAG GCCATGATTGGTGAGGCCTTCGAAGTGCGGTAGCAGGGCAG < 41bp 0.809657209133179 0.595956646737356 0.90678275 0.6545037 prediction 0.427401124791646 Functional Loss - RHBG ENSG00000132677 intronic Human protein_coding chr1:156348201 chr1:156348204 . . 0 24 hm5C_associated_SNPs_86663 0 0 1 1 156348189 156348204 mRNA hsa-miR-328 RHBG miRanda miRanda
6963 chr11 6265319 6265319 1 + G A SKCM 6265316 + 6265296 6265336 41 CCATCATGGAGGAGAAAGGACGTGAGATCCTGCTGAAAATG CCATCATGGAGGAGAAAGGACGTAAGATCCTGCTGAAAATG < 41bp 0.715232622920798 0.501560781664635 0.27838528 0.16760758 prediction 0.427343682512326 Functional Loss - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6265316 chr11:6265319 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_86686 0 0 0 1 6265310 6265331 mRNA hsa-miR-214 CNGA4 miRanda miRanda
6964 chr15 99901591 99901591 1 + C T PRAD 99901588 + 99901568 99901608 41 GGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTT GGTGAAGCTGCTTTCCTTTTCATTAGGGCAGCGAACCGTTT < 41bp 0.730827027628962 0.517173091306676 0.108775675 0.17966291 prediction 0.427307872644572 Functional Loss - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99901588 chr15:99901591 nonsynonymous SNV 0.965 2 24 hm5C_associated_SNPs_86701 0 0 1 1 99901577 99901598 mRNA hsa-miR-874 LRRC28 miRanda miRanda
6965 chr3 3182241 3182241 1 + C T COAD 3182238 + 3182218 3182258 41 ACTACACTACGGATTGATGTCACCACTGATGGAAGACATGC ACTACACTACGGATTGATGTCACTACTGATGGAAGACATGC < 41bp 0.765108111010638 0.551498263325251 0.02443409 0.05712223 prediction 0.427219695370773 Functional Loss - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3182238 chr3:3182241 synonymous SNV . 0 24 hm5C_associated_SNPs_86738 0 0 1 1 3182240 3182267 mRNA hsa-miR-875-5p TRNT1 miRanda miRanda
6966 chr1 224564208 224564208 1 + A T rs113994437 224564204 + 224564184 224564224 41 TCCACAATCACCCCCAAACCCAGAAAATCCCCACTGGCTCT TCCACAATCACCCCCAAACCCAGATAATCCCCACTGGCTCT < 41bp 0.713603153598237 0.425057434921867 0.24720651 0.36493757 prediction 0.427206307196475 Functional Loss - CNIH4 ENSG00000143771 UTR3 Human protein_coding chr1:224564204 chr1:224564208 . . 0 25 hm5C_associated_SNPs_86743 0 0 1 1 224564197 224564218 mRNA hsa-miR-491-5p CNIH4 miRanda miRanda
6967 chr4 74608459 74608459 1 + G A rs115993429 74608456 + 74608436 74608476 41 AAGGATTTTCCTAGATATTGCACGGGAGAATATACAAATAG AAGGATTTTCCTAGATATTGCACAGGAGAATATACAAATAG < 41bp 0.720352536158239 0.506792426546556 0.12619734 0.05095887 prediction 0.427120219223367 Functional Loss - CXCL8 ENSG00000169429 UTR3 Human protein_coding chr4:74608456 chr4:74608459 . . 0 24 hm5C_associated_SNPs_86771 0 0 1 2 74608436 74608459 mRNA hsa-miR-19a IL8 miRanda miRanda
6968 chr4 74608459 74608459 1 + G A rs115993429 74608456 + 74608436 74608476 41 AAGGATTTTCCTAGATATTGCACGGGAGAATATACAAATAG AAGGATTTTCCTAGATATTGCACAGGAGAATATACAAATAG < 41bp 0.720352536158239 0.506792426546556 0.12619734 0.05095887 prediction 0.427120219223367 Functional Loss - CXCL8 ENSG00000169429 UTR3 Human protein_coding chr4:74608456 chr4:74608459 . . 0 24 hm5C_associated_SNPs_86771 0 0 1 2 74608436 74608459 mRNA hsa-miR-19b IL8 miRanda miRanda
6969 chrX 37642838 37642838 1 + C T LUAD 37642836 + 37642816 37642856 41 GTCGAAATCTGCTGTCCTTCCTCAGGGGTTCCAGTGCGGTA GTCGAAATCTGCTGTCCTTCCTTAGGGGTTCCAGTGCGGTA < 41bp 0.713546756851514 0.428441793080177 0.012219191 0.007783085 prediction 0.427093513703028 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37642836 chrX:37642838 synonymous SNV . 0 23 hm5C_associated_SNPs_86784 0 0 0 5 37642837 37642853 mRNA hsa-miR-29a CYBB miRanda miRanda
6970 chrX 37642838 37642838 1 + C T LUAD 37642836 + 37642816 37642856 41 GTCGAAATCTGCTGTCCTTCCTCAGGGGTTCCAGTGCGGTA GTCGAAATCTGCTGTCCTTCCTTAGGGGTTCCAGTGCGGTA < 41bp 0.713546756851514 0.428441793080177 0.012219191 0.007783085 prediction 0.427093513703028 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37642836 chrX:37642838 synonymous SNV . 0 23 hm5C_associated_SNPs_86784 0 0 0 5 37642835 37642853 mRNA hsa-miR-29b CYBB miRanda miRanda
6971 chrX 37642838 37642838 1 + C T LUAD 37642836 + 37642816 37642856 41 GTCGAAATCTGCTGTCCTTCCTCAGGGGTTCCAGTGCGGTA GTCGAAATCTGCTGTCCTTCCTTAGGGGTTCCAGTGCGGTA < 41bp 0.713546756851514 0.428441793080177 0.012219191 0.007783085 prediction 0.427093513703028 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37642836 chrX:37642838 synonymous SNV . 0 23 hm5C_associated_SNPs_86784 0 0 0 5 37642822 37642843 mRNA hsa-miR-125b CYBB miRanda miRanda
6972 chrX 37642838 37642838 1 + C T LUAD 37642836 + 37642816 37642856 41 GTCGAAATCTGCTGTCCTTCCTCAGGGGTTCCAGTGCGGTA GTCGAAATCTGCTGTCCTTCCTTAGGGGTTCCAGTGCGGTA < 41bp 0.713546756851514 0.428441793080177 0.012219191 0.007783085 prediction 0.427093513703028 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37642836 chrX:37642838 synonymous SNV . 0 23 hm5C_associated_SNPs_86784 0 0 0 5 37642820 37642843 mRNA hsa-miR-125a-5p CYBB miRanda miRanda
6973 chrX 37642838 37642838 1 + C T LUAD 37642836 + 37642816 37642856 41 GTCGAAATCTGCTGTCCTTCCTCAGGGGTTCCAGTGCGGTA GTCGAAATCTGCTGTCCTTCCTTAGGGGTTCCAGTGCGGTA < 41bp 0.713546756851514 0.428441793080177 0.012219191 0.007783085 prediction 0.427093513703028 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37642836 chrX:37642838 synonymous SNV . 0 23 hm5C_associated_SNPs_86784 0 0 0 5 37642836 37642853 mRNA hsa-miR-29c CYBB miRanda miRanda
6974 chr16 21983256 21983256 1 + A T STAD 21983252 + 21983232 21983272 41 ATCTGGCCCCAGGTGAAATCCGAGAACAGAATGGAGACAGT ATCTGGCCCCAGGTGAAATCCGAGTACAGAATGGAGACAGT < 41bp 0.898161520877791 0.68462591857858 0.8521408 0.8620285 prediction 0.427071204598422 Functional Loss - UQCRC2 ENSG00000140740 CDS Human protein_coding chr16:21983252 chr16:21983256 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_86793 0 0 1 1 21983244 21983268 mRNA hsa-miR-136 UQCRC2 miRanda miRanda
6975 chr1 156180047 156180047 1 + C T HNSC 156180045 + 156180025 156180065 41 TTCCAGGTTGAGGGCAAGAACTCCATCATCCTGACCTTCAG TTCCAGGTTGAGGGCAAGAACTTCATCATCCTGACCTTCAG < 41bp 0.868259840993745 0.654730095327575 0.9422585 0.072570056 prediction 0.427059491332338 Functional Loss - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156180045 chr1:156180047 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_86797 0 0 1 1 156180033 156180058 mRNA hsa-miR-125a-3p SLC25A44 miRanda miRanda
6976 chr7 107546792 107546792 1 + A C PAAD 107546791 + 107546771 107546811 41 AAAGATGGTTGTTATTGGTGCAGGAGTAATAGGTGTAGAAT AAAGATGGTTGTTATTGGTGCCGGAGTAATAGGTGTAGAAT < 41bp 0.713468164302622 0.462249555329745 0.87068707 0.88358104 prediction 0.426936328605244 Functional Loss - DLD ENSG00000091140 CDS Human protein_coding chr7:107546791 chr7:107546792 synonymous SNV . 0 22 hm5C_associated_SNPs_86845 0 0 1 3 107546772 107546793 mRNA hsa-miR-29a DLD miRanda miRanda
6977 chr7 107546792 107546792 1 + A C PAAD 107546791 + 107546771 107546811 41 AAAGATGGTTGTTATTGGTGCAGGAGTAATAGGTGTAGAAT AAAGATGGTTGTTATTGGTGCCGGAGTAATAGGTGTAGAAT < 41bp 0.713468164302622 0.462249555329745 0.87068707 0.88358104 prediction 0.426936328605244 Functional Loss - DLD ENSG00000091140 CDS Human protein_coding chr7:107546791 chr7:107546792 synonymous SNV . 0 22 hm5C_associated_SNPs_86845 0 0 1 3 107546771 107546793 mRNA hsa-miR-29b DLD miRanda miRanda
6978 chr7 107546792 107546792 1 + A C PAAD 107546791 + 107546771 107546811 41 AAAGATGGTTGTTATTGGTGCAGGAGTAATAGGTGTAGAAT AAAGATGGTTGTTATTGGTGCCGGAGTAATAGGTGTAGAAT < 41bp 0.713468164302622 0.462249555329745 0.87068707 0.88358104 prediction 0.426936328605244 Functional Loss - DLD ENSG00000091140 CDS Human protein_coding chr7:107546791 chr7:107546792 synonymous SNV . 0 22 hm5C_associated_SNPs_86845 0 0 1 3 107546772 107546793 mRNA hsa-miR-29c DLD miRanda miRanda
6979 chr16 58550780 58550780 1 + C T UCEC 58550777 + 58550757 58550797 41 CTCCCCCGTGATGGTGCCTGCTGCAGACATACTAAACCACT CTCCCCCGTGATGGTGCCTGCTGTAGACATACTAAACCACT < 41bp 0.713455001196056 0.487857933115264 0.20979345 0.10311586 prediction 0.426910002392113 Functional Loss - SETD6 ENSG00000103037 CDS Human protein_coding chr16:58550777 chr16:58550780 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_86856 0 0 1 2 58550759 58550780 mRNA hsa-miR-214 SETD6 miRanda miRanda
6980 chr16 58550780 58550780 1 + C T UCEC 58550777 + 58550757 58550797 41 CTCCCCCGTGATGGTGCCTGCTGCAGACATACTAAACCACT CTCCCCCGTGATGGTGCCTGCTGTAGACATACTAAACCACT < 41bp 0.713455001196056 0.487857933115264 0.20979345 0.10311586 prediction 0.426910002392113 Functional Loss - SETD6 ENSG00000103037 CDS Human protein_coding chr16:58550777 chr16:58550780 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_86856 0 0 1 2 58550777 58550798 mRNA hsa-miR-140-5p SETD6 miRanda miRanda
6981 chr12 124081898 124081898 1 + C T rs578067164 124081896 + 124081876 124081916 41 GTACCTTAGGACTCAGTCATCTCCACTTAAATTGATGACAC GTACCTTAGGACTCAGTCATCTTCACTTAAATTGATGACAC < 41bp 0.822861230950937 0.60941769589261 0.9016079 0.19558582 prediction 0.426887070116654 Functional Loss - TMED2 ENSG00000086598 UTR3 Human protein_coding chr12:124081896 chr12:124081898 . . 0 23 hm5C_associated_SNPs_86868 0 0 1 2 124081879 124081899 mRNA hsa-miR-143 TMED2 miRanda miRanda
6982 chr12 124081898 124081898 1 + C T rs578067164 124081896 + 124081876 124081916 41 GTACCTTAGGACTCAGTCATCTCCACTTAAATTGATGACAC GTACCTTAGGACTCAGTCATCTTCACTTAAATTGATGACAC < 41bp 0.822861230950937 0.60941769589261 0.9016079 0.19558582 prediction 0.426887070116654 Functional Loss - TMED2 ENSG00000086598 UTR3 Human protein_coding chr12:124081896 chr12:124081898 . . 0 23 hm5C_associated_SNPs_86868 0 0 1 2 124081897 124081919 mRNA hsa-miR-599 TMED2 miRanda miRanda
6983 chr13 115057234 115057234 1 + G T UCEC 115057232 + 115057212 115057252 41 AAAAAAAAGAGACAGATAAACAGAAGAAAATTGCAGAGAAA AAAAAAAAGAGACAGATAAACATAAGAAAATTGCAGAGAAA < 41bp 0.713430586516163 0.390335065102692 0.8667354 0.2692134 prediction 0.426861173032326 Functional Loss - UPF3A ENSG00000169062 CDS Human protein_coding chr13:115057232 chr13:115057234 nonsynonymous SNV 0.047 0 23 hm5C_associated_SNPs_86878 0 0 1 1 115057229 115057250 mRNA hsa-miR-544 UPF3A miRanda miRanda
6984 chr12 28605531 28605531 1 + G A THCA 28605528 + 28605508 28605548 41 AGACAGAACATGCAAAAGATCAAGAAAAAGTATCTCAGGAA AGACAGAACATGCAAAAGATCAAAAAAAAGTATCTCAGGAA < 41bp 0.71343003015502 0.498903911598914 0.86738575 0.5393433 prediction 0.426860060310039 Functional Loss - CCDC91 ENSG00000123106 CDS Human protein_coding chr12:28605528 chr12:28605531 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_86879 0 0 1 3 28605525 28605548 mRNA hsa-miR-125b CCDC91 miRanda miRanda
6985 chr12 28605531 28605531 1 + G A THCA 28605528 + 28605508 28605548 41 AGACAGAACATGCAAAAGATCAAGAAAAAGTATCTCAGGAA AGACAGAACATGCAAAAGATCAAAAAAAAGTATCTCAGGAA < 41bp 0.71343003015502 0.498903911598914 0.86738575 0.5393433 prediction 0.426860060310039 Functional Loss - CCDC91 ENSG00000123106 CDS Human protein_coding chr12:28605528 chr12:28605531 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_86879 0 0 1 3 28605525 28605548 mRNA hsa-miR-125a-5p CCDC91 miRanda miRanda
6986 chr12 28605531 28605531 1 + G A THCA 28605528 + 28605508 28605548 41 AGACAGAACATGCAAAAGATCAAGAAAAAGTATCTCAGGAA AGACAGAACATGCAAAAGATCAAAAAAAAGTATCTCAGGAA < 41bp 0.71343003015502 0.498903911598914 0.86738575 0.5393433 prediction 0.426860060310039 Functional Loss - CCDC91 ENSG00000123106 CDS Human protein_coding chr12:28605528 chr12:28605531 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_86879 0 0 1 3 28605529 28605549 mRNA hsa-miR-384 CCDC91 miRanda miRanda
6987 chr12 121001191 121001191 1 + G T UCEC 121001188 + 121001168 121001208 41 TCTGCCTTCGATGAAGAAACCACGGAAGTTTGTTCTCTGGA TCTGCCTTCGATGAAGAAACCACTGAAGTTTGTTCTCTGGA < 41bp 0.713405825074229 0.306618975865861 0.20807925 0.06351423 prediction 0.426811650148458 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121001188 chr12:121001191 synonymous SNV . 0 24 hm5C_associated_SNPs_86902 0 0 1 1 121001178 121001202 mRNA hsa-miR-495 RNF10 miRanda miRanda
6988 chr12 121001190 121001190 1 + C T UCEC 121001188 + 121001168 121001208 41 TCTGCCTTCGATGAAGAAACCACGGAAGTTTGTTCTCTGGA TCTGCCTTCGATGAAGAAACCATGGAAGTTTGTTCTCTGGA < 41bp 0.713405825074229 0.430472136575369 0.20807925 0.14466962 prediction 0.426811650148458 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121001188 chr12:121001190 nonsynonymous SNV 0.199 0 23 hm5C_associated_SNPs_86903 0 0 1 1 121001178 121001202 mRNA hsa-miR-495 RNF10 miRanda miRanda
6989 chr1 217915374 217915374 1 + C T GBM 217915372 + 217915352 217915392 41 GAGAAGAGAAGAAGGCTAACCTCGAAAGGGAAGAGAAGAAA GAGAAGAGAAGAAGGCTAACCTTGAAAGGGAAGAGAAGAAA < 41bp 0.877646745874872 0.664246013187407 0.8882334 0.28301352 prediction 0.426801465374931 Functional Loss - SPATA17 ENSG00000162814 CDS Human protein_coding chr1:217915372 chr1:217915374 synonymous SNV . 0 23 hm5C_associated_SNPs_86907 0 0 0 2 217915358 217915383 mRNA hsa-miR-204 SPATA17 miRanda miRanda
6990 chr1 217915374 217915374 1 + C T GBM 217915372 + 217915352 217915392 41 GAGAAGAGAAGAAGGCTAACCTCGAAAGGGAAGAGAAGAAA GAGAAGAGAAGAAGGCTAACCTTGAAAGGGAAGAGAAGAAA < 41bp 0.877646745874872 0.664246013187407 0.8882334 0.28301352 prediction 0.426801465374931 Functional Loss - SPATA17 ENSG00000162814 CDS Human protein_coding chr1:217915372 chr1:217915374 synonymous SNV . 0 23 hm5C_associated_SNPs_86907 0 0 0 2 217915358 217915383 mRNA hsa-miR-211 SPATA17 miRanda miRanda
6991 chr8 20147731 20147731 1 + G A rs183998954 20147728 + 20147708 20147748 41 CACGCCGGATGTCATCTCATCTCGGAAGCTAAGCAGGGTCG CACGCCGGATGTCATCTCATCTCAGAAGCTAAGCAGGGTCG < 41bp 0.773180933127679 0.559783625456277 0.5260013 0.13888031 prediction 0.426794615342803 Functional Loss - LZTS1-AS1 ENSG00000253733 ncRNA_exonic Human lincRNA chr8:20147728 chr8:20147731 . . 0 24 hm5C_associated_SNPs_86910 0 0 0 1 20147709 20147731 lncRNA hsa-miR-143-3p LZTS1-AS1 miRanda starBase2
6992 chr1 167365587 167365587 1 + G A BLCA 167365584 + 167365564 167365604 41 CTTCAGCCAAACTACCATCTCTCGATTTGAAGCCTTGAACC CTTCAGCCAAACTACCATCTCTCAATTTGAAGCCTTGAACC < 41bp 0.713344984150009 0.493848190913951 0.384764 0.040367454 prediction 0.426689968300018 Functional Loss - POU2F1 ENSG00000143190 CDS Human protein_coding chr1:167365584 chr1:167365587 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_86957 0 0 1 1 167365568 167365588 mRNA hsa-miR-185 POU2F1 miRanda miRanda
6993 chr3 44938227 44938227 1 + C T COAD 44938224 + 44938204 44938244 41 GAGAAAAATGTCCTGGACTGCTGCATTTCCCTGCTGACTGA GAGAAAAATGTCCTGGACTGCTGTATTTCCCTGCTGACTGA < 41bp 0.74524247628685 0.531900483823036 0.049966246 0.06373891 prediction 0.426683984927627 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44938224 chr3:44938227 synonymous SNV . 0 24 hm5C_associated_SNPs_86959 0 0 0 3 44938221 44938243 mRNA hsa-miR-16 TGM4 miRanda miRanda
6994 chr3 44938227 44938227 1 + C T COAD 44938224 + 44938204 44938244 41 GAGAAAAATGTCCTGGACTGCTGCATTTCCCTGCTGACTGA GAGAAAAATGTCCTGGACTGCTGTATTTCCCTGCTGACTGA < 41bp 0.74524247628685 0.531900483823036 0.049966246 0.06373891 prediction 0.426683984927627 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44938224 chr3:44938227 synonymous SNV . 0 24 hm5C_associated_SNPs_86959 0 0 0 3 44938220 44938240 mRNA hsa-miR-214 TGM4 miRanda miRanda
6995 chr3 44938227 44938227 1 + C T COAD 44938224 + 44938204 44938244 41 GAGAAAAATGTCCTGGACTGCTGCATTTCCCTGCTGACTGA GAGAAAAATGTCCTGGACTGCTGTATTTCCCTGCTGACTGA < 41bp 0.74524247628685 0.531900483823036 0.049966246 0.06373891 prediction 0.426683984927627 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44938224 chr3:44938227 synonymous SNV . 0 24 hm5C_associated_SNPs_86959 0 0 0 3 44938222 44938243 mRNA hsa-miR-195 TGM4 miRanda miRanda
6996 chr14 100992272 100992272 1 + C T UCEC 100992269 + 100992249 100992289 41 ATCCTGTTCCTCCGGGAAGGCTCCGAGTTCCTGAGCAGCAC ATCCTGTTCCTCCGGGAAGGCTCTGAGTTCCTGAGCAGCAC < 41bp 0.769293758386924 0.555979442753022 0.09171003 0.071555555 prediction 0.426628631267803 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100992269 chr14:100992272 synonymous SNV . 0 24 hm5C_associated_SNPs_86991 0 0 0 1 100992263 100992282 mRNA hsa-miR-873 WDR25 miRanda miRanda
6997 chr3 159713467 159713467 1 + G A rs568408 159713464 + 159713444 159713484 41 GGATGGGACTATTACATCCACATGATACCTCTGATCAAGTA GGATGGGACTATTACATCCACATAATACCTCTGATCAAGTA < 41bp 0.716824274929359 0.503535499417673 0.11730701 0.0713335 prediction 0.426577551023372 Functional Loss - IL12A-AS1 ENSG00000244040 ncRNA_intronic Human antisense chr3:159713464 chr3:159713467 . . 0 24 hm5C_associated_SNPs_87004 0 0 1 2 159713459 159713480 mRNA hsa-miR-383 IL12A miRanda miRanda
6998 chr3 159713467 159713467 1 + G A rs568408 159713464 + 159713444 159713484 41 GGATGGGACTATTACATCCACATGATACCTCTGATCAAGTA GGATGGGACTATTACATCCACATAATACCTCTGATCAAGTA < 41bp 0.716824274929359 0.503535499417673 0.11730701 0.0713335 prediction 0.426577551023372 Functional Loss - IL12A-AS1 ENSG00000244040 ncRNA_intronic Human antisense chr3:159713464 chr3:159713467 . . 0 24 hm5C_associated_SNPs_87004 0 0 1 2 159713454 159713475 mRNA hsa-miR-202 IL12A miRanda miRanda
6999 chr20 39713125 39713125 1 + G T UCEC 39713122 + 39713102 39713142 41 GATGGTAAATTGAAAAAACCCAAGAATAAAGATAAAGATAA GATGGTAAATTGAAAAAACCCAATAATAAAGATAAAGATAA < 41bp 0.713244054793829 0.348619065131116 0.38460946 0.8757106 prediction 0.426488109587658 Functional Loss - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39713122 chr20:39713125 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_87034 0 0 1 1 39713104 39713126 mRNA hsa-miR-9 TOP1 miRanda miRanda
7000 chr7 100189370 100189370 1 + G A LUSC 100189367 + 100189347 100189387 41 GCGTGGCCCCCTTGCTAGCCCACGGCTACCGCCGCTTCTTG GCGTGGCCCCCTTGCTAGCCCACAGCTACCGCCGCTTCTTG < 41bp 0.823020471174168 0.609784852235128 0.15389216 0.060942322 prediction 0.42647123787808 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100189367 chr7:100189370 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_87039 0 0 0 1 100189370 100189390 mRNA hsa-miR-31 FBXO24 miRanda miRanda
7001 chr17 13928562 13928562 1 + C T UCEC 13928560 + 13928540 13928580 41 TTTGGCCTGGCCTCCTGTACCTCGCTGCAGAGAGGCTTCTC TTTGGCCTGGCCTCCTGTACCTTGCTGCAGAGAGGCTTCTC < 41bp 0.715772676557215 0.502592633647757 0.03632307 0.03464529 prediction 0.426360085818916 Functional Loss - CDRT15P1 ENSG00000141028;ENSG00000236088 ncRNA_intronic Human other chr17:13928560 chr17:13928562 . . 0 23 hm5C_associated_SNPs_87087 0 0 0 1 13928546 13928567 mRNA hsa-miR-214 CDRT15P miRanda miRanda
7002 chr2 101611915 101611915 1 + C T BLCA 101611912 + 101611892 101611932 41 CAGCAGGACTCGCTACTTCTCTCCACCTACTCACAACAGCC CAGCAGGACTCGCTACTTCTCTCTACCTACTCACAACAGCC < 41bp 0.713102694662768 0.495238238768659 0.9252533 0.80906326 prediction 0.426205389325537 Functional Loss - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101611912 chr2:101611915 synonymous SNV . 0 24 hm5C_associated_SNPs_87154 0 0 1 1 101611894 101611916 mRNA hsa-miR-185 NPAS2 miRanda miRanda
7003 chr20 34618321 34618321 1 + G A SKCM 34618318 + 34618298 34618338 41 AAGTTCCTCCAGCAGAACAGCTGGAATATCTTTCGGAAGGA AAGTTCCTCCAGCAGAACAGCTGAAATATCTTTCGGAAGGA < 41bp 0.713077576919367 0.473779448483376 0.8595586 0.85422766 prediction 0.426155153838734 Functional Loss - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34618318 chr20:34618321 stopgain 0.019 0 24 hm5C_associated_SNPs_87178 0 0 0 1 34618308 34618331 mRNA hsa-miR-186 C20orf152 miRanda miRanda
7004 chr14 23072464 23072464 1 + C T STAD 23072462 + 23072442 23072482 41 ACATGGACTCACTGAGTGCCCGCCGCACACTGCACACCTTC ACATGGACTCACTGAGTGCCCGTCGCACACTGCACACCTTC < 41bp 0.843708963519074 0.630664050990142 0.21804065 0.19529566 prediction 0.426089825057864 Functional Loss - ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23072462 chr14:23072464 synonymous SNV . 0 23 hm5C_associated_SNPs_87199 0 0 0 1 23072457 23072478 mRNA hsa-miR-210 ABHD4 miRanda miRanda
7005 chr3 49749980 49749980 1 + A C CESC 49749979 + 49749959 49749999 41 CATTGAGCACGGTGATCGCACAGGGTCTCTCTTTGCCTTCA CATTGAGCACGGTGATCGCACCGGGTCTCTCTTTGCCTTCA < 41bp 0.839364856036048 0.626336711777051 0.9309563 0.92506534 prediction 0.426056288517994 Functional Loss - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49749979 chr3:49749980 synonymous SNV . 0 22 hm5C_associated_SNPs_87212 0 0 1 1 49749964 49749986 mRNA hsa-miR-504 RNF123 miRanda miRanda
7006 chr1 203830805 203830805 1 + G T LUAD 203830803 + 203830783 203830823 41 CCACCATGGCGTACCGTGGCCAGGGTCAGAAAGTGCAGAAG CCACCATGGCGTACCGTGGCCATGGTCAGAAAGTGCAGAAG < 41bp 0.891968844499347 0.678993171073155 0.901548 0.53309095 prediction 0.425951346852384 Functional Loss - SNRPE ENSG00000182004 CDS Human protein_coding chr1:203830803 chr1:203830805 nonsynonymous SNV 0.991 2 23 hm5C_associated_SNPs_87253 0 0 1 2 203830787 203830810 mRNA hsa-miR-504 SNRPE miRanda miRanda
7007 chr1 203830805 203830805 1 + G T LUAD 203830803 + 203830783 203830823 41 CCACCATGGCGTACCGTGGCCAGGGTCAGAAAGTGCAGAAG CCACCATGGCGTACCGTGGCCATGGTCAGAAAGTGCAGAAG < 41bp 0.891968844499347 0.678993171073155 0.901548 0.53309095 prediction 0.425951346852384 Functional Loss - SNRPE ENSG00000182004 CDS Human protein_coding chr1:203830803 chr1:203830805 nonsynonymous SNV 0.991 2 23 hm5C_associated_SNPs_87253 0 0 1 2 203830802 203830823 mRNA hsa-miR-544 SNRPE miRanda miRanda
7008 chr4 113333091 113333091 1 + C T OV 113333088 + 113333068 113333108 41 TCGACGTCTCTGGAAAACTTCTGCAGGTCGCCAAAGGTCTC TCGACGTCTCTGGAAAACTTCTGTAGGTCGCCAAAGGTCTC < 41bp 0.739797416558396 0.52687896080541 0.34669852 0.26743925 prediction 0.425836911505972 Functional Loss - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113333088 chr4:113333091 stopgain 0.786 1 24 hm5C_associated_SNPs_87295 0 0 0 2 113333079 113333102 mRNA hsa-miR-96 ALPK1 miRanda miRanda
7009 chr4 113333091 113333091 1 + C T OV 113333088 + 113333068 113333108 41 TCGACGTCTCTGGAAAACTTCTGCAGGTCGCCAAAGGTCTC TCGACGTCTCTGGAAAACTTCTGTAGGTCGCCAAAGGTCTC < 41bp 0.739797416558396 0.52687896080541 0.34669852 0.26743925 prediction 0.425836911505972 Functional Loss - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113333088 chr4:113333091 stopgain 0.786 1 24 hm5C_associated_SNPs_87295 0 0 0 2 113333081 113333102 mRNA hsa-miR-1271 ALPK1 miRanda miRanda
7010 chr5 1222034 1222034 1 + C T rs568954088 1222032 + 1222012 1222052 41 AGTACTGAGAAGGCCCATCCCACGGCGTGCCATACACTGGT AGTACTGAGAAGGCCCATCCCATGGCGTGCCATACACTGGT < 41bp 0.770422647719095 0.557562149248649 0.058517486 0.09829658 prediction 0.425720996940892 Functional Loss - SLC6A19 ENSG00000174358 UTR3 Human protein_coding chr5:1222032 chr5:1222034 . . 0 23 hm5C_associated_SNPs_87335 0 0 0 1 1222023 1222045 mRNA hsa-miR-183 SLC6A19 miRanda miRanda
7011 chr10 20436754 20436754 1 + G A SKCM 20436751 + 20436731 20436771 41 AGTGGGACCATGTACATCTCCAGGATAATTATAACCTGGGA AGTGGGACCATGTACATCTCCAGAATAATTATAACCTGGGA < 41bp 0.768884847432766 0.55602914149494 0.50192857 0.29682595 prediction 0.425711411875651 Functional Loss - PLXDC2 ENSG00000120594 CDS Human protein_coding chr10:20436751 chr10:20436754 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_87340 0 0 1 2 20436749 20436768 mRNA hsa-miR-154 PLXDC2 miRanda miRanda
7012 chr10 20436754 20436754 1 + G A SKCM 20436751 + 20436731 20436771 41 AGTGGGACCATGTACATCTCCAGGATAATTATAACCTGGGA AGTGGGACCATGTACATCTCCAGAATAATTATAACCTGGGA < 41bp 0.768884847432766 0.55602914149494 0.50192857 0.29682595 prediction 0.425711411875651 Functional Loss - PLXDC2 ENSG00000120594 CDS Human protein_coding chr10:20436751 chr10:20436754 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_87340 0 0 1 2 20436736 20436757 mRNA hsa-miR-490-3p PLXDC2 miRanda miRanda
7013 chr3 127783795 127783795 1 - G A STAD 127783797 - 127783777 127783817 41 ATTCTGGCGGTAGAACGCCTCCCGAAGGGCTCGGACCTTGT ATTCTGGCGGTAGAACGCCTCCTGAAGGGCTCGGACCTTGT < 41bp 0.827476254993547 0.614653008519583 0.22510672 0.09663576 prediction 0.425646492947928 Functional Loss - SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127783797 chr3:127783795 nonsynonymous SNV 0.359 1 23 hm5C_associated_SNPs_87364 0 0 1 1 127783783 127783804 mRNA hsa-miR-615-3p RUVBL1 miRanda miRanda
7014 chr12 122669219 122669219 1 + A T SKCM 122669215 + 122669195 122669235 41 CCCTGGGCTCTGCTGAACAACTCGAATGCAGAAGACAGTTT CCCTGGGCTCTGCTGAACAACTCGTATGCAGAAGACAGTTT < 41bp 0.913988642409921 0.701167914196839 0.90167826 0.12100616 prediction 0.425641456426163 Functional Loss - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122669215 chr12:122669219 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_87368 0 0 0 1 122669207 122669228 mRNA hsa-miR-544 LRRC43 miRanda miRanda
7015 chr5 76335437 76335437 1 + C T UCEC 76335435 + 76335415 76335455 41 TGGTCGTTATCAGTTTCATTCTCGAGTAGATTTGCAACCTT TGGTCGTTATCAGTTTCATTCTTGAGTAGATTTGCAACCTT < 41bp 0.872633384773403 0.659828214454739 0.39301047 0.17795524 prediction 0.425610340637327 Functional Loss - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76335435 chr5:76335437 stopgain 0.997 1 23 hm5C_associated_SNPs_87378 0 0 0 3 76335431 76335456 mRNA hsa-miR-18a AGGF1 miRanda miRanda
7016 chr5 76335437 76335437 1 + C T UCEC 76335435 + 76335415 76335455 41 TGGTCGTTATCAGTTTCATTCTCGAGTAGATTTGCAACCTT TGGTCGTTATCAGTTTCATTCTTGAGTAGATTTGCAACCTT < 41bp 0.872633384773403 0.659828214454739 0.39301047 0.17795524 prediction 0.425610340637327 Functional Loss - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76335435 chr5:76335437 stopgain 0.997 1 23 hm5C_associated_SNPs_87378 0 0 0 3 76335418 76335438 mRNA hsa-miR-143 AGGF1 miRanda miRanda
7017 chr5 76335437 76335437 1 + C T UCEC 76335435 + 76335415 76335455 41 TGGTCGTTATCAGTTTCATTCTCGAGTAGATTTGCAACCTT TGGTCGTTATCAGTTTCATTCTTGAGTAGATTTGCAACCTT < 41bp 0.872633384773403 0.659828214454739 0.39301047 0.17795524 prediction 0.425610340637327 Functional Loss - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76335435 chr5:76335437 stopgain 0.997 1 23 hm5C_associated_SNPs_87378 0 0 0 3 76335431 76335456 mRNA hsa-miR-18b AGGF1 miRanda miRanda
7018 chr11 49831520 49831520 1 + G A SKCM 49831517 + 49831497 49831537 41 TTCGGTGTTTGTAATAAGTACTGGAAAGGGAAGAATCAGAA TTCGGTGTTTGTAATAAGTACTGAAAAGGGAAGAATCAGAA < 41bp 0.734628355923258 0.521824042495555 0.21914917 0.11748341 prediction 0.425608626855406 Functional Loss - LOC440040 ENSG00000205035 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:49831517 chr11:49831520 . . 0 24 hm5C_associated_SNPs_87379 0 0 0 2 49831506 49831528 mRNA hsa-miR-204 LOC440040 miRanda miRanda
7019 chr11 49831520 49831520 1 + G A SKCM 49831517 + 49831497 49831537 41 TTCGGTGTTTGTAATAAGTACTGGAAAGGGAAGAATCAGAA TTCGGTGTTTGTAATAAGTACTGAAAAGGGAAGAATCAGAA < 41bp 0.734628355923258 0.521824042495555 0.21914917 0.11748341 prediction 0.425608626855406 Functional Loss - LOC440040 ENSG00000205035 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:49831517 chr11:49831520 . . 0 24 hm5C_associated_SNPs_87379 0 0 0 2 49831507 49831528 mRNA hsa-miR-211 LOC440040 miRanda miRanda
7020 chr1 110775744 110775744 1 + G A rs115357778 110775741 + 110775721 110775761 41 GGAAAATCTCCCATGCGACCCTCGGGGCCCAGAGCCATCTG GGAAAATCTCCCATGCGACCCTCAGGGCCCAGAGCCATCTG < 41bp 0.759781736239781 0.546987172769151 0.16120109 0.020724416 prediction 0.425589126941259 Functional Loss - KCNC4 ENSG00000116396 UTR3 Human protein_coding chr1:110775741 chr1:110775744 . . 0 24 hm5C_associated_SNPs_87385 0 0 1 2 110775731 110775755 mRNA hsa-miR-330-5p KCNC4 miRanda miRanda
7021 chr1 110775744 110775744 1 + G A rs115357778 110775741 + 110775721 110775761 41 GGAAAATCTCCCATGCGACCCTCGGGGCCCAGAGCCATCTG GGAAAATCTCCCATGCGACCCTCAGGGCCCAGAGCCATCTG < 41bp 0.759781736239781 0.546987172769151 0.16120109 0.020724416 prediction 0.425589126941259 Functional Loss - KCNC4 ENSG00000116396 UTR3 Human protein_coding chr1:110775741 chr1:110775744 . . 0 24 hm5C_associated_SNPs_87385 0 0 1 2 110775736 110775755 mRNA hsa-miR-326 KCNC4 miRanda miRanda
7022 chr17 19451355 19451355 1 + G A rs150632967 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCTCATCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.455148133160418 0.088799864 0.07177237 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451355 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_87402 0 0 1 6 19451353 19451374 mRNA hsa-miR-15a SLC47A1 miRanda miRanda
7023 chr17 19451355 19451355 1 + G A rs150632967 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCTCATCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.455148133160418 0.088799864 0.07177237 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451355 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_87402 0 0 1 6 19451353 19451374 mRNA hsa-miR-16 SLC47A1 miRanda miRanda
7024 chr17 19451355 19451355 1 + G A rs150632967 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCTCATCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.455148133160418 0.088799864 0.07177237 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451355 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_87402 0 0 1 6 19451353 19451374 mRNA hsa-miR-15b SLC47A1 miRanda miRanda
7025 chr17 19451355 19451355 1 + G A rs150632967 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCTCATCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.455148133160418 0.088799864 0.07177237 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451355 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_87402 0 0 1 6 19451354 19451374 mRNA hsa-miR-195 SLC47A1 miRanda miRanda
7026 chr17 19451355 19451355 1 + G A rs150632967 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCTCATCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.455148133160418 0.088799864 0.07177237 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451355 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_87402 0 0 1 6 19451353 19451374 mRNA hsa-miR-424 SLC47A1 miRanda miRanda
7027 chr17 19451355 19451355 1 + G A rs150632967 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCTCATCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.455148133160418 0.088799864 0.07177237 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451355 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_87402 0 0 1 6 19451354 19451374 mRNA hsa-miR-497 SLC47A1 miRanda miRanda
7028 chr17 19451353 19451353 1 + T C ESCA 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCCCGTCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.46082773940452 0.088799864 0.06165743 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451353 nonsynonymous SNV 0.003 4 22 hm5C_associated_SNPs_87403 0 0 1 4 19451353 19451374 mRNA hsa-miR-15a SLC47A1 miRanda miRanda
7029 chr17 19451353 19451353 1 + T C ESCA 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCCCGTCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.46082773940452 0.088799864 0.06165743 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451353 nonsynonymous SNV 0.003 4 22 hm5C_associated_SNPs_87403 0 0 1 4 19451353 19451374 mRNA hsa-miR-16 SLC47A1 miRanda miRanda
7030 chr17 19451353 19451353 1 + T C ESCA 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCCCGTCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.46082773940452 0.088799864 0.06165743 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451353 nonsynonymous SNV 0.003 4 22 hm5C_associated_SNPs_87403 0 0 1 4 19451353 19451374 mRNA hsa-miR-15b SLC47A1 miRanda miRanda
7031 chr17 19451353 19451353 1 + T C ESCA 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCCCGTCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.46082773940452 0.088799864 0.06165743 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451353 nonsynonymous SNV 0.003 4 22 hm5C_associated_SNPs_87403 0 0 1 4 19451353 19451374 mRNA hsa-miR-424 SLC47A1 miRanda miRanda
7032 chr17 19451354 19451354 1 + C T UCEC 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCTTGTCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.438860126283009 0.088799864 0.07988343 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451354 synonymous SNV . 0 23 hm5C_associated_SNPs_87404 0 0 1 6 19451353 19451374 mRNA hsa-miR-15a SLC47A1 miRanda miRanda
7033 chr17 19451354 19451354 1 + C T UCEC 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCTTGTCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.438860126283009 0.088799864 0.07988343 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451354 synonymous SNV . 0 23 hm5C_associated_SNPs_87404 0 0 1 6 19451353 19451374 mRNA hsa-miR-16 SLC47A1 miRanda miRanda
7034 chr17 19451354 19451354 1 + C T UCEC 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCTTGTCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.438860126283009 0.088799864 0.07988343 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451354 synonymous SNV . 0 23 hm5C_associated_SNPs_87404 0 0 1 6 19451353 19451374 mRNA hsa-miR-15b SLC47A1 miRanda miRanda
7035 chr17 19451354 19451354 1 + C T UCEC 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCTTGTCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.438860126283009 0.088799864 0.07988343 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451354 synonymous SNV . 0 23 hm5C_associated_SNPs_87404 0 0 1 6 19451354 19451374 mRNA hsa-miR-195 SLC47A1 miRanda miRanda
7036 chr17 19451354 19451354 1 + C T UCEC 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCTTGTCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.438860126283009 0.088799864 0.07988343 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451354 synonymous SNV . 0 23 hm5C_associated_SNPs_87404 0 0 1 6 19451353 19451374 mRNA hsa-miR-424 SLC47A1 miRanda miRanda
7037 chr17 19451354 19451354 1 + C T UCEC 19451352 + 19451332 19451372 41 TGATCCTGCAGCGGAGTGCGCTCGTCCTGCTCCTCTGCTGC TGATCCTGCAGCGGAGTGCGCTTGTCCTGCTCCTCTGCTGC < 41bp 0.712774454149583 0.438860126283009 0.088799864 0.07988343 prediction 0.425548908299165 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19451352 chr17:19451354 synonymous SNV . 0 23 hm5C_associated_SNPs_87404 0 0 1 6 19451354 19451374 mRNA hsa-miR-497 SLC47A1 miRanda miRanda
7038 chr12 100904824 100904824 1 + G A COAD 100904821 + 100904801 100904841 41 ACAAAGAAGCCCCGCATGGGCGCGTCAGCAGGGAGGATCAA ACAAAGAAGCCCCGCATGGGCGCATCAGCAGGGAGGATCAA < 41bp 0.783472319631758 0.570719511525196 0.03426236 0.03563887 prediction 0.425505616213125 Functional Loss - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100904821 chr12:100904824 synonymous SNV . 0 24 hm5C_associated_SNPs_87431 0 0 0 1 100904812 100904833 mRNA hsa-miR-370 NR1H4 miRanda miRanda
7039 chr19 42312933 42312933 1 + G A rs3752172 42312930 + 42312910 42312950 41 GTCGGAGTGGCGCTGGTGGCCGCGCTGGTGTGTTTCCTGCT GTCGGAGTGGCGCTGGTGGCCGCACTGGTGTGTTTCCTGCT < 41bp 0.712708498881475 0.456550736174116 0.39893618 0.42441803 prediction 0.425416997762949 Functional Loss - CEACAM3 ENSG00000170956 CDS Human protein_coding chr19:42312930 chr19:42312933 synonymous SNV . 0 24 hm5C_associated_SNPs_87480 0 0 0 2 42312922 42312943 mRNA hsa-miR-362-3p CEACAM3 miRanda miRanda
7040 chr19 42312933 42312933 1 + G A rs3752172 42312930 + 42312910 42312950 41 GTCGGAGTGGCGCTGGTGGCCGCGCTGGTGTGTTTCCTGCT GTCGGAGTGGCGCTGGTGGCCGCACTGGTGTGTTTCCTGCT < 41bp 0.712708498881475 0.456550736174116 0.39893618 0.42441803 prediction 0.425416997762949 Functional Loss - CEACAM3 ENSG00000170956 CDS Human protein_coding chr19:42312930 chr19:42312933 synonymous SNV . 0 24 hm5C_associated_SNPs_87480 0 0 0 2 42312922 42312943 mRNA hsa-miR-329 CEACAM3 miRanda miRanda
7041 chr14 37145642 37145642 1 + G A GBM 37145639 + 37145619 37145659 41 AGAGAAGGTAGTCATTCTGTCACGGCTTCCGCGCTCTGATG AGAGAAGGTAGTCATTCTGTCACAGCTTCCGCGCTCTGATG < 41bp 0.712707119514279 0.466943847295965 0.26036453 0.13676739 prediction 0.425414239028558 Functional Loss - PAX9 ENSG00000198807 CDS Human protein_coding chr14:37145639 chr14:37145642 synonymous SNV . 0 24 hm5C_associated_SNPs_87483 0 0 0 1 37145621 37145642 mRNA hsa-miR-542-3p PAX9 miRanda miRanda
7042 chr20 48605107 48605107 1 + C T rs1047920 48605105 + 48605085 48605125 41 CAGACTAGAGTCTGAGATGCCCCGAGCCCAGGCAGCTATTT CAGACTAGAGTCTGAGATGCCCTGAGCCCAGGCAGCTATTT < 41bp 0.779604249096287 0.566898496852236 0.15550014 0.17012852 prediction 0.425411504488102 Functional Loss - SNAI1 ENSG00000124216 UTR3 Human protein_coding chr20:48605105 chr20:48605107 . . 0 23 hm5C_associated_SNPs_87484 0 0 0 1 48605101 48605122 mRNA hsa-miR-22 SNAI1 miRanda miRanda
7043 chr12 109935699 109935699 1 + G A BLCA 109935696 + 109935676 109935716 41 ACATCATGTCTGTGCCTGCTCTGGTGACTCATCTCAGCACA ACATCATGTCTGTGCCTGCTCTGATGACTCATCTCAGCACA < 41bp 0.807935326664869 0.595292112240894 0.17123497 0.03644824 prediction 0.42528642884795 Functional Loss - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109935696 chr12:109935699 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_87528 0 0 1 1 109935691 109935711 mRNA hsa-miR-143 UBE3B miRanda miRanda
7044 chr11 114278891 114278891 1 + G A rs10790007 114278888 + 114278868 114278908 41 TAGTGAATCAAGAAAACATCCAGGTTGACAGTCTAAAATGG TAGTGAATCAAGAAAACATCCAGATTGACAGTCTAAAATGG < 41bp 0.722136438816354 0.509518815298088 0.35743898 0.11183578 prediction 0.425235247036534 Functional Loss - RBM7 ENSG00000076053 UTR3 Human protein_coding chr11:114278888 chr11:114278891 . . 0 24 hm5C_associated_SNPs_87555 0 0 0 1 114278873 114278894 mRNA hsa-miR-490-3p RBM7 miRanda miRanda
7045 chr8 146221028 146221028 1 + G C rs190018532 146221024 + 146221004 146221044 41 CATCCTACCAGCAGCACCATCAAGGCATGTAGGAGCTTTCT CATCCTACCAGCAGCACCATCAAGCCATGTAGGAGCTTTCT < 41bp 0.712616938227644 0.41758184277692 0.8923605 0.5038978 prediction 0.425233876455288 Functional Loss - TMED10P1 ENSG00000196922 ncRNA_exonic Human transcribed_unitary_pseudogene chr8:146221024 chr8:146221028 . . 0 25 hm5C_associated_SNPs_87556 0 0 0 1 146221028 146221049 mRNA hsa-miR-31 TMED10P1 miRanda miRanda
7046 chr3 138188938 138188938 1 + G A rs544928371 138188935 + 138188915 138188955 41 ACAAGGACCCTGTGTGGAGCCAGGTGTTCTCCTTCTTTGTG ACAAGGACCCTGTGTGGAGCCAGATGTTCTCCTTCTTTGTG < 41bp 0.809290098052138 0.596673613212295 0.90348023 0.88233656 prediction 0.425232969679686 Functional Loss - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138188935 chr3:138188938 nonsynonymous SNV 0.603 0 24 hm5C_associated_SNPs_87557 0 0 0 1 138188916 138188938 mRNA hsa-miR-149 ESYT3 miRanda miRanda
7047 chr20 23424613 23424613 1 + T C rs3746736 23424612 + 23424592 23424632 41 ATAGTCACTGTGAAGATTGGCTGGACCAAATGCAAGAGGAA ATAGTCACTGTGAAGATTGGCCGGACCAAATGCAAGAGGAA < 41bp 0.77479632344751 0.562189726138448 0.29976648 0.23123756 prediction 0.425213194618123 Functional Loss - CSTL1 ENSG00000125823 CDS Human protein_coding chr20:23424612 chr20:23424613 nonsynonymous SNV 0.873 0 22 hm5C_associated_SNPs_87568 0 1 1 3 23424601 23424621 mRNA hsa-miR-133a CSTL1 miRanda miRanda
7048 chr20 23424613 23424613 1 + T C rs3746736 23424612 + 23424592 23424632 41 ATAGTCACTGTGAAGATTGGCTGGACCAAATGCAAGAGGAA ATAGTCACTGTGAAGATTGGCCGGACCAAATGCAAGAGGAA < 41bp 0.77479632344751 0.562189726138448 0.29976648 0.23123756 prediction 0.425213194618123 Functional Loss - CSTL1 ENSG00000125823 CDS Human protein_coding chr20:23424612 chr20:23424613 nonsynonymous SNV 0.873 0 22 hm5C_associated_SNPs_87568 0 1 1 3 23424601 23424621 mRNA hsa-miR-133b CSTL1 miRanda miRanda
7049 chr20 23424613 23424613 1 + T C rs3746736 23424612 + 23424592 23424632 41 ATAGTCACTGTGAAGATTGGCTGGACCAAATGCAAGAGGAA ATAGTCACTGTGAAGATTGGCCGGACCAAATGCAAGAGGAA < 41bp 0.77479632344751 0.562189726138448 0.29976648 0.23123756 prediction 0.425213194618123 Functional Loss - CSTL1 ENSG00000125823 CDS Human protein_coding chr20:23424612 chr20:23424613 nonsynonymous SNV 0.873 0 22 hm5C_associated_SNPs_87568 0 1 1 3 23424610 23424630 mRNA hsa-miR-431 CSTL1 miRanda miRanda
7050 chr12 121618235 121618235 1 + G A rs74357548 121618232 + 121618212 121618252 41 AGCTACTAGGGAGAAGTCTGCAAGATGTCAAGGGCCAAGAA AGCTACTAGGGAGAAGTCTGCAAAATGTCAAGGGCCAAGAA < 41bp 0.791464528286846 0.578905233972072 0.9012743 0.35882345 prediction 0.425118588629548 Functional Loss - P2RX7 ENSG00000089041 CDS Human protein_coding chr12:121618232 chr12:121618235 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_87609 0 0 0 1 121618228 121618249 mRNA hsa-miR-328 P2RX7 miRanda miRanda
7051 chr11 18472599 18472599 1 + G A LUAD 18472596 + 18472576 18472616 41 TCAGATGTTGTGAAAATTAACTTGAATTCTGAGGAGGAGGC TCAGATGTTGTGAAAATTAACTTAAATTCTGAGGAGGAGGC < 41bp 0.750523872574759 0.537978337064713 0.23647696 0.13388905 prediction 0.425091071020091 Functional Loss - LDHC ENSG00000166796 CDS Human protein_coding chr11:18472596 chr11:18472599 synonymous SNV . 0 24 hm5C_associated_SNPs_87620 0 0 0 3 18472580 18472601 mRNA hsa-miR-26a LDHC miRanda miRanda
7052 chr11 18472599 18472599 1 + G A LUAD 18472596 + 18472576 18472616 41 TCAGATGTTGTGAAAATTAACTTGAATTCTGAGGAGGAGGC TCAGATGTTGTGAAAATTAACTTAAATTCTGAGGAGGAGGC < 41bp 0.750523872574759 0.537978337064713 0.23647696 0.13388905 prediction 0.425091071020091 Functional Loss - LDHC ENSG00000166796 CDS Human protein_coding chr11:18472596 chr11:18472599 synonymous SNV . 0 24 hm5C_associated_SNPs_87620 0 0 0 3 18472578 18472601 mRNA hsa-miR-26b LDHC miRanda miRanda
7053 chr11 18472599 18472599 1 + G A LUAD 18472596 + 18472576 18472616 41 TCAGATGTTGTGAAAATTAACTTGAATTCTGAGGAGGAGGC TCAGATGTTGTGAAAATTAACTTAAATTCTGAGGAGGAGGC < 41bp 0.750523872574759 0.537978337064713 0.23647696 0.13388905 prediction 0.425091071020091 Functional Loss - LDHC ENSG00000166796 CDS Human protein_coding chr11:18472596 chr11:18472599 synonymous SNV . 0 24 hm5C_associated_SNPs_87620 0 0 0 3 18472585 18472601 mRNA hsa-miR-1297 LDHC miRanda miRanda
7054 chr14 77336480 77336480 1 + G A rs148780367 77336477 + 77336457 77336497 41 TTTCGTACCAGTTTCTTGAACACGATGAAGCCATAGCAACA TTTCGTACCAGTTTCTTGAACACAATGAAGCCATAGCAACA < 41bp 0.789863109675079 0.577326407439379 0.24021357 0.14606133 prediction 0.425073404471401 Functional Loss - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77336477 chr14:77336480 synonymous SNV . 0 24 hm5C_associated_SNPs_87625 0 0 0 2 77336469 77336491 mRNA hsa-miR-135a C14orf166B miRanda miRanda
7055 chr14 77336480 77336480 1 + G A rs148780367 77336477 + 77336457 77336497 41 TTTCGTACCAGTTTCTTGAACACGATGAAGCCATAGCAACA TTTCGTACCAGTTTCTTGAACACAATGAAGCCATAGCAACA < 41bp 0.789863109675079 0.577326407439379 0.24021357 0.14606133 prediction 0.425073404471401 Functional Loss - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77336477 chr14:77336480 synonymous SNV . 0 24 hm5C_associated_SNPs_87625 0 0 0 2 77336468 77336491 mRNA hsa-miR-135b C14orf166B miRanda miRanda
7056 chr18 54424288 54424288 1 + G A UCEC 54424285 + 54424265 54424305 41 AAGTACTGGATGAAGTTTGCCTGGATCGCCTTGGAATGCTG AAGTACTGGATGAAGTTTGCCTGAATCGCCTTGGAATGCTG < 41bp 0.712509902364403 0.479839699485318 0.1633285 0.11889896 prediction 0.425019804728805 Functional Loss - WDR7 ENSG00000091157 CDS Human protein_coding chr18:54424285 chr18:54424288 nonsynonymous SNV 0.932 1 24 hm5C_associated_SNPs_87642 0 0 1 2 54424285 54424307 mRNA hsa-miR-23a WDR7 miRanda miRanda
7057 chr18 54424288 54424288 1 + G A UCEC 54424285 + 54424265 54424305 41 AAGTACTGGATGAAGTTTGCCTGGATCGCCTTGGAATGCTG AAGTACTGGATGAAGTTTGCCTGAATCGCCTTGGAATGCTG < 41bp 0.712509902364403 0.479839699485318 0.1633285 0.11889896 prediction 0.425019804728805 Functional Loss - WDR7 ENSG00000091157 CDS Human protein_coding chr18:54424285 chr18:54424288 nonsynonymous SNV 0.932 1 24 hm5C_associated_SNPs_87642 0 0 1 2 54424285 54424307 mRNA hsa-miR-23b WDR7 miRanda miRanda
7058 chr5 76332466 76332466 1 + C T LAML 76332463 + 76332443 76332483 41 TTTGAGAGCTGCAGCAGAAGCGGCTGTATCACAGACTGGAT TTTGAGAGCTGCAGCAGAAGCGGTTGTATCACAGACTGGAT < 41bp 0.7271201681585 0.514681721909607 0.6528312 0.7265054 prediction 0.424876892497786 Functional Loss - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76332463 chr5:76332466 nonsynonymous SNV 0.974 5 24 hm5C_associated_SNPs_87699 0 0 1 1 76332461 76332483 mRNA hsa-miR-145 AGGF1 miRanda miRanda
7059 chr12 13232857 13232857 1 + C T STAD 13232855 + 13232835 13232875 41 ACTAATGGAGGGCCAGATGGCTCAGCTACAGGAGTCCACCC ACTAATGGAGGGCCAGATGGCTTAGCTACAGGAGTCCACCC < 41bp 0.712435272258767 0.432772485363457 0.10656211 0.066998094 prediction 0.424870544517535 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232855 chr12:13232857 stopgain 0.483 0 23 hm5C_associated_SNPs_87701 0 0 0 2 13232846 13232870 mRNA hsa-miR-10a KIAA1467 miRanda miRanda
7060 chr12 13232857 13232857 1 + C T STAD 13232855 + 13232835 13232875 41 ACTAATGGAGGGCCAGATGGCTCAGCTACAGGAGTCCACCC ACTAATGGAGGGCCAGATGGCTTAGCTACAGGAGTCCACCC < 41bp 0.712435272258767 0.432772485363457 0.10656211 0.066998094 prediction 0.424870544517535 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232855 chr12:13232857 stopgain 0.483 0 23 hm5C_associated_SNPs_87701 0 0 0 2 13232845 13232867 mRNA hsa-miR-486-5p KIAA1467 miRanda miRanda
7061 chr17 56235309 56235309 1 + C T rs527575284 56235307 + 56235287 56235327 41 CGGCTAGGCCGGCAGGGCCACACGACACAGCTGAAGTTTGT CGGCTAGGCCGGCAGGGCCACATGACACAGCTGAAGTTTGT < 41bp 0.791146987586517 0.578711732102558 0.053216428 0.058773667 prediction 0.424870510967919 Functional Loss - MSX2P1 ENSG00000229590 downstream Human processed_pseudogene chr17:56235307 chr17:56235309 . . 0 23 hm5C_associated_SNPs_87702 0 0 0 1 56235308 56235329 mRNA hsa-miR-495 MSX2P1 miRanda miRanda
7062 chr1 110999334 110999334 1 + G A rs116271905 110999331 + 110999311 110999351 41 CCCTCTCCCCACATGTATCCCTCGGTCTGAATTAGACATTC CCCTCTCCCCACATGTATCCCTCAGTCTGAATTAGACATTC < 41bp 0.760234183565448 0.547845798067446 0.11651662 0.13886437 prediction 0.424776770996003 Functional Loss - PROK1 ENSG00000270380 ncRNA_intronic Human antisense chr1:110999331 chr1:110999334 . . 0 24 hm5C_associated_SNPs_87733 0 0 1 3 110999332 110999353 mRNA hsa-miR-1 PROK1 miRanda miRanda
7063 chr1 110999334 110999334 1 + G A rs116271905 110999331 + 110999311 110999351 41 CCCTCTCCCCACATGTATCCCTCGGTCTGAATTAGACATTC CCCTCTCCCCACATGTATCCCTCAGTCTGAATTAGACATTC < 41bp 0.760234183565448 0.547845798067446 0.11651662 0.13886437 prediction 0.424776770996003 Functional Loss - PROK1 ENSG00000270380 ncRNA_intronic Human antisense chr1:110999331 chr1:110999334 . . 0 24 hm5C_associated_SNPs_87733 0 0 1 3 110999332 110999353 mRNA hsa-miR-206 PROK1 miRanda miRanda
7064 chr1 110999334 110999334 1 + G A rs116271905 110999331 + 110999311 110999351 41 CCCTCTCCCCACATGTATCCCTCGGTCTGAATTAGACATTC CCCTCTCCCCACATGTATCCCTCAGTCTGAATTAGACATTC < 41bp 0.760234183565448 0.547845798067446 0.11651662 0.13886437 prediction 0.424776770996003 Functional Loss - PROK1 ENSG00000270380 ncRNA_intronic Human antisense chr1:110999331 chr1:110999334 . . 0 24 hm5C_associated_SNPs_87733 0 0 1 3 110999333 110999353 mRNA hsa-miR-613 PROK1 miRanda miRanda
7065 chr12 131649608 131649608 1 + G A UCEC 131649605 + 131649585 131649625 41 ACGCCAGGCTGGGATTTCCGCTCGATCTGGGAATGAGCAAT ACGCCAGGCTGGGATTTCCGCTCAATCTGGGAATGAGCAAT < 41bp 0.758785002694298 0.546426153674292 0.6252902 0.15161166 prediction 0.424717698040012 Functional Loss - LINC01257 ENSG00000204603 ncRNA_exonic Human lincRNA chr12:131649605 chr12:131649608 . . 0 24 hm5C_associated_SNPs_87763 0 0 0 1 131649608 131649629 mRNA hsa-miR-33a LOC116437 miRanda miRanda
7066 chr1 186390022 186390022 1 + G T rs145401556 186390020 + 186390000 186390040 41 AAAACATGAATTCATAAATTCAGGAAGCACAATATATACCA AAAACATGAATTCATAAATTCATGAAGCACAATATATACCA < 41bp 0.712769316391147 0.500439045165462 0.23798564 0.051552385 prediction 0.424660542451369 Functional Loss - C1orf27 ENSG00000157181 UTR3 Human protein_coding chr1:186390020 chr1:186390022 . . 0 23 hm5C_associated_SNPs_87794 0 0 1 2 186390011 186390031 mRNA hsa-miR-218 C1orf27 miRanda miRanda
7067 chr1 186390022 186390022 1 + G T rs145401556 186390020 + 186390000 186390040 41 AAAACATGAATTCATAAATTCAGGAAGCACAATATATACCA AAAACATGAATTCATAAATTCATGAAGCACAATATATACCA < 41bp 0.712769316391147 0.500439045165462 0.23798564 0.051552385 prediction 0.424660542451369 Functional Loss - C1orf27 ENSG00000157181 UTR3 Human protein_coding chr1:186390020 chr1:186390022 . . 0 23 hm5C_associated_SNPs_87794 0 0 1 2 186390022 186390044 mRNA hsa-miR-9 C1orf27 miRanda miRanda
7068 chr2 25224413 25224413 1 + A C rs567011791 25224412 + 25224392 25224432 41 TGTGGGGTGGACCATGGAAACAGGTTTGAAGAGAGAAGCTC TGTGGGGTGGACCATGGAAACCGGTTTGAAGAGAGAAGCTC < 41bp 0.840919693853179 0.628625689336847 0.35504812 0.10251203 prediction 0.424588009032663 Functional Loss - DNAJC27-AS1 ENSG00000224165 ncRNA_exonic Human antisense chr2:25224412 chr2:25224413 . . 0 22 hm5C_associated_SNPs_87820 0 0 0 1 25224402 25224414 mRNA hsa-miR-370 LOC729723 miRanda miRanda
7069 chr5 162945257 162945257 1 + C T SKCM 162945255 + 162945235 162945275 41 AGAAATGCTCAGCTTGACTGCTCCAAATTGGAGACCTTGGG AGAAATGCTCAGCTTGACTGCTTCAAATTGGAGACCTTGGG < 41bp 0.837987231385569 0.625693401060187 0.35751325 0.062476426 prediction 0.424587660650765 Functional Loss - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162945255 chr5:162945257 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_87821 0 0 1 1 162945235 162945257 mRNA hsa-miR-497 MAT2B miRanda miRanda
7070 chr4 84382343 84382343 1 - G A UCEC 84382345 - 84382325 84382365 41 GTAACGTGATAGAATTTATTCCCGATATCTGATGTTACAAA GTAACGTGATAGAATTTATTCCTGATATCTGATGTTACAAA < 41bp 0.71221793884498 0.483188627620078 0.0642505 0.04059559 prediction 0.424435877689959 Functional Loss - MRPS18C ENSG00000163319 CDS Human protein_coding chr4:84382345 chr4:84382343 nonsynonymous SNV 0.796 0 23 hm5C_associated_SNPs_87894 0 0 1 1 84382327 84382348 mRNA hsa-miR-194 FAM175A miRanda miRanda
7071 chr21 47987298 47987298 1 + G A PRAD 47987295 + 47987275 47987315 41 CTCTGCAGTGCCGTATTCACCTGGACCAACCTGCTGGTGGT CTCTGCAGTGCCGTATTCACCTGAACCAACCTGCTGGTGGT < 41bp 0.762918956603323 0.550740323225209 0.7844057 0.29758927 prediction 0.424357266756228 Functional Loss - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47987295 chr21:47987298 stopgain 1.000 1 24 hm5C_associated_SNPs_87923 0 0 1 4 47987290 47987311 mRNA hsa-miR-214 DIP2A miRanda miRanda
7072 chr21 47987298 47987298 1 + G A PRAD 47987295 + 47987275 47987315 41 CTCTGCAGTGCCGTATTCACCTGGACCAACCTGCTGGTGGT CTCTGCAGTGCCGTATTCACCTGAACCAACCTGCTGGTGGT < 41bp 0.762918956603323 0.550740323225209 0.7844057 0.29758927 prediction 0.424357266756228 Functional Loss - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47987295 chr21:47987298 stopgain 1.000 1 24 hm5C_associated_SNPs_87923 0 0 1 4 47987283 47987304 mRNA hsa-miR-133a DIP2A miRanda miRanda
7073 chr21 47987298 47987298 1 + G A PRAD 47987295 + 47987275 47987315 41 CTCTGCAGTGCCGTATTCACCTGGACCAACCTGCTGGTGGT CTCTGCAGTGCCGTATTCACCTGAACCAACCTGCTGGTGGT < 41bp 0.762918956603323 0.550740323225209 0.7844057 0.29758927 prediction 0.424357266756228 Functional Loss - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47987295 chr21:47987298 stopgain 1.000 1 24 hm5C_associated_SNPs_87923 0 0 1 4 47987283 47987298 mRNA hsa-miR-125a-3p DIP2A miRanda miRanda
7074 chr21 47987298 47987298 1 + G A PRAD 47987295 + 47987275 47987315 41 CTCTGCAGTGCCGTATTCACCTGGACCAACCTGCTGGTGGT CTCTGCAGTGCCGTATTCACCTGAACCAACCTGCTGGTGGT < 41bp 0.762918956603323 0.550740323225209 0.7844057 0.29758927 prediction 0.424357266756228 Functional Loss - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47987295 chr21:47987298 stopgain 1.000 1 24 hm5C_associated_SNPs_87923 0 0 1 4 47987283 47987304 mRNA hsa-miR-133b DIP2A miRanda miRanda
7075 chr17 38133698 38133698 1 + C T rs185212011 38133696 + 38133676 38133716 41 CTGGAATTACAGGCACGTGCCACGACACCCAGCTAATTTTT CTGGAATTACAGGCACGTGCCATGACACCCAGCTAATTTTT < 41bp 0.728454135106306 0.516279491884907 0.110967755 0.16954443 prediction 0.424349286442798 Functional Loss - GSDMA ENSG00000167914 UTR3 Human protein_coding chr17:38133696 chr17:38133698 . . 0 23 hm5C_associated_SNPs_87928 0 0 0 1 38133686 38133709 mRNA hsa-miR-138 GSDMA miRanda miRanda
7076 chr20 55213858 55213858 1 + C T rs148562100 55213856 + 55213836 55213876 41 GTAAACTTGAAAAGGGTAGGCACGAAGCAATTTGTTGCTGC GTAAACTTGAAAAGGGTAGGCATGAAGCAATTTGTTGCTGC < 41bp 0.775233586347632 0.56313285195 0.21365869 0.3296914 prediction 0.424201468795264 Functional Loss - TFAP2C ENSG00000087510 UTR3 Human protein_coding chr20:55213856 chr20:55213858 . . 0 23 hm5C_associated_SNPs_87978 0 0 1 6 55213856 55213878 mRNA hsa-miR-15a TFAP2C miRanda miRanda
7077 chr20 55213858 55213858 1 + C T rs148562100 55213856 + 55213836 55213876 41 GTAAACTTGAAAAGGGTAGGCACGAAGCAATTTGTTGCTGC GTAAACTTGAAAAGGGTAGGCATGAAGCAATTTGTTGCTGC < 41bp 0.775233586347632 0.56313285195 0.21365869 0.3296914 prediction 0.424201468795264 Functional Loss - TFAP2C ENSG00000087510 UTR3 Human protein_coding chr20:55213856 chr20:55213858 . . 0 23 hm5C_associated_SNPs_87978 0 0 1 6 55213858 55213878 mRNA hsa-miR-16 TFAP2C miRanda miRanda
7078 chr20 55213858 55213858 1 + C T rs148562100 55213856 + 55213836 55213876 41 GTAAACTTGAAAAGGGTAGGCACGAAGCAATTTGTTGCTGC GTAAACTTGAAAAGGGTAGGCATGAAGCAATTTGTTGCTGC < 41bp 0.775233586347632 0.56313285195 0.21365869 0.3296914 prediction 0.424201468795264 Functional Loss - TFAP2C ENSG00000087510 UTR3 Human protein_coding chr20:55213856 chr20:55213858 . . 0 23 hm5C_associated_SNPs_87978 0 0 1 6 55213857 55213878 mRNA hsa-miR-15b TFAP2C miRanda miRanda
7079 chr20 55213858 55213858 1 + C T rs148562100 55213856 + 55213836 55213876 41 GTAAACTTGAAAAGGGTAGGCACGAAGCAATTTGTTGCTGC GTAAACTTGAAAAGGGTAGGCATGAAGCAATTTGTTGCTGC < 41bp 0.775233586347632 0.56313285195 0.21365869 0.3296914 prediction 0.424201468795264 Functional Loss - TFAP2C ENSG00000087510 UTR3 Human protein_coding chr20:55213856 chr20:55213858 . . 0 23 hm5C_associated_SNPs_87978 0 0 1 6 55213857 55213880 mRNA hsa-miR-335 TFAP2C miRanda miRanda
7080 chr20 55213858 55213858 1 + C T rs148562100 55213856 + 55213836 55213876 41 GTAAACTTGAAAAGGGTAGGCACGAAGCAATTTGTTGCTGC GTAAACTTGAAAAGGGTAGGCATGAAGCAATTTGTTGCTGC < 41bp 0.775233586347632 0.56313285195 0.21365869 0.3296914 prediction 0.424201468795264 Functional Loss - TFAP2C ENSG00000087510 UTR3 Human protein_coding chr20:55213856 chr20:55213858 . . 0 23 hm5C_associated_SNPs_87978 0 0 1 6 55213856 55213878 mRNA hsa-miR-424 TFAP2C miRanda miRanda
7081 chr20 55213858 55213858 1 + C T rs148562100 55213856 + 55213836 55213876 41 GTAAACTTGAAAAGGGTAGGCACGAAGCAATTTGTTGCTGC GTAAACTTGAAAAGGGTAGGCATGAAGCAATTTGTTGCTGC < 41bp 0.775233586347632 0.56313285195 0.21365869 0.3296914 prediction 0.424201468795264 Functional Loss - TFAP2C ENSG00000087510 UTR3 Human protein_coding chr20:55213856 chr20:55213858 . . 0 23 hm5C_associated_SNPs_87978 0 0 1 6 55213857 55213878 mRNA hsa-miR-497 TFAP2C miRanda miRanda
7082 chr7 72743375 72743375 1 + G A SKCM 72743372 + 72743352 72743392 41 TTCTATCCTAGTGAAATACTCGGGATACCTGGAACACATGG TTCTATCCTAGTGAAATACTCGGAATACCTGGAACACATGG < 41bp 0.712083994420989 0.483868148351728 0.9465147 0.92376053 prediction 0.424167988841978 Functional Loss - FKBP6 ENSG00000077800 CDS Human protein_coding chr7:72743372 chr7:72743375 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_87989 0 0 0 2 72743369 72743393 mRNA hsa-miR-199a-5p FKBP6 miRanda miRanda
7083 chr7 72743375 72743375 1 + G A SKCM 72743372 + 72743352 72743392 41 TTCTATCCTAGTGAAATACTCGGGATACCTGGAACACATGG TTCTATCCTAGTGAAATACTCGGAATACCTGGAACACATGG < 41bp 0.712083994420989 0.483868148351728 0.9465147 0.92376053 prediction 0.424167988841978 Functional Loss - FKBP6 ENSG00000077800 CDS Human protein_coding chr7:72743372 chr7:72743375 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_87989 0 0 0 2 72743370 72743393 mRNA hsa-miR-199b-5p FKBP6 miRanda miRanda
7084 chr3 9952668 9952668 1 + G A rs61743385 9952665 + 9952645 9952685 41 AAGCTGCCCTCTGCCAGAGGCACGACTGGCATACCCTTTGC AAGCTGCCCTCTGCCAGAGGCACAACTGGCATACCCTTTGC < 41bp 0.80370328708191 0.591633969450425 0.09665024 0.03694451 prediction 0.42413863526297 Functional Loss - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9952665 chr3:9952668 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_88011 0 0 1 1 9952658 9952682 mRNA hsa-miR-296-3p IL17RE miRanda miRanda
7085 chr9 84532881 84532881 1 + G A SKCM 84532878 + 84532858 84532898 41 CCTCAGCCAGCTTTATTTCTCAGGGAGATTCCAAAGATGGG CCTCAGCCAGCTTTATTTCTCAGAGAGATTCCAAAGATGGG < 41bp 0.743883798312462 0.531819084574891 0.9377956 0.8572303 prediction 0.424129427475141 Functional Loss - SPATA31D5P ENSG00000240632 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:84532878 chr9:84532881 . . 0 24 hm5C_associated_SNPs_88017 0 0 0 2 84532862 84532883 mRNA hsa-miR-125b FLJ43950 miRanda miRanda
7086 chr9 84532881 84532881 1 + G A SKCM 84532878 + 84532858 84532898 41 CCTCAGCCAGCTTTATTTCTCAGGGAGATTCCAAAGATGGG CCTCAGCCAGCTTTATTTCTCAGAGAGATTCCAAAGATGGG < 41bp 0.743883798312462 0.531819084574891 0.9377956 0.8572303 prediction 0.424129427475141 Functional Loss - SPATA31D5P ENSG00000240632 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:84532878 chr9:84532881 . . 0 24 hm5C_associated_SNPs_88017 0 0 0 2 84532862 84532883 mRNA hsa-miR-125a-5p FLJ43950 miRanda miRanda
7087 chr2 46808718 46808718 1 - A G COAD 46808719 - 46808699 46808739 41 TCTCCTCAGGTATGGCCCATCTCCTGTACGCTTGGAGCGAC TCTCCTCAGGTATGGCCCATCCCCTGTACGCTTGGAGCGAC < 41bp 0.830275317706793 0.618234288564212 0.34055585 0.13527945 prediction 0.424082058285162 Functional Loss - PIGF ENSG00000151665 CDS Human protein_coding chr2:46808719 chr2:46808718 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_88039 0 0 0 2 46808695 46808718 mRNA hsa-miR-18a PIGF miRanda miRanda
7088 chr2 46808718 46808718 1 - A G COAD 46808719 - 46808699 46808739 41 TCTCCTCAGGTATGGCCCATCTCCTGTACGCTTGGAGCGAC TCTCCTCAGGTATGGCCCATCCCCTGTACGCTTGGAGCGAC < 41bp 0.830275317706793 0.618234288564212 0.34055585 0.13527945 prediction 0.424082058285162 Functional Loss - PIGF ENSG00000151665 CDS Human protein_coding chr2:46808719 chr2:46808718 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_88039 0 0 0 2 46808695 46808718 mRNA hsa-miR-18b PIGF miRanda miRanda
7089 chr4 146567246 146567246 1 + C T UCEC 146567244 + 146567224 146567264 41 TTAGGAGGCGTGACAAGGACCACAAATGAAGCTATTCTGTT TTAGGAGGCGTGACAAGGACCATAAATGAAGCTATTCTGTT < 41bp 0.711976878524306 0.42046592630059 0.13271031 0.1506666 prediction 0.423953757048611 Functional Loss - MMAA ENSG00000151611 CDS Human protein_coding chr4:146567244 chr4:146567246 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_88088 0 0 0 2 146567226 146567247 mRNA hsa-miR-133a MMAA miRanda miRanda
7090 chr4 146567246 146567246 1 + C T UCEC 146567244 + 146567224 146567264 41 TTAGGAGGCGTGACAAGGACCACAAATGAAGCTATTCTGTT TTAGGAGGCGTGACAAGGACCATAAATGAAGCTATTCTGTT < 41bp 0.711976878524306 0.42046592630059 0.13271031 0.1506666 prediction 0.423953757048611 Functional Loss - MMAA ENSG00000151611 CDS Human protein_coding chr4:146567244 chr4:146567246 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_88088 0 0 0 2 146567226 146567247 mRNA hsa-miR-133b MMAA miRanda miRanda
7091 chr19 58118418 58118418 1 + C T rs62126240 58118415 + 58118395 58118435 41 TCCGAAAAACCCACCTCATTCGACACCAGACTGTTCACACT TCCGAAAAACCCACCTCATTCGATACCAGACTGTTCACACT < 41bp 0.738327877033706 0.526388208878387 0.1794641 0.1948348 prediction 0.423879336310638 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58118415 chr19:58118418 nonsynonymous SNV 0.002 4 24 hm5C_associated_SNPs_88124 0 0 1 2 58118410 58118430 mRNA hsa-miR-212 ZNF530 miRanda miRanda
7092 chr19 58118418 58118418 1 + C T rs62126240 58118415 + 58118395 58118435 41 TCCGAAAAACCCACCTCATTCGACACCAGACTGTTCACACT TCCGAAAAACCCACCTCATTCGATACCAGACTGTTCACACT < 41bp 0.738327877033706 0.526388208878387 0.1794641 0.1948348 prediction 0.423879336310638 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58118415 chr19:58118418 nonsynonymous SNV 0.002 4 24 hm5C_associated_SNPs_88124 0 0 1 2 58118407 58118430 mRNA hsa-miR-132 ZNF530 miRanda miRanda
7093 chr13 50594405 50594405 1 + G A UCEC 50594402 + 50594382 50594422 41 TGGCCAACGGAACAAATGTCCTCGGCTTACTGATTGACACT TGGCCAACGGAACAAATGTCCTCAGCTTACTGATTGACACT < 41bp 0.733041010694911 0.521103108245697 0.27553385 0.16533998 prediction 0.423875804898428 Functional Loss - KCNRG ENSG00000198553 CDS Human protein_coding chr13:50594402 chr13:50594405 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_88126 0 0 0 9 50594403 50594425 mRNA hsa-miR-17 KCNRG miRanda miRanda
7094 chr13 50594405 50594405 1 + G A UCEC 50594402 + 50594382 50594422 41 TGGCCAACGGAACAAATGTCCTCGGCTTACTGATTGACACT TGGCCAACGGAACAAATGTCCTCAGCTTACTGATTGACACT < 41bp 0.733041010694911 0.521103108245697 0.27553385 0.16533998 prediction 0.423875804898428 Functional Loss - KCNRG ENSG00000198553 CDS Human protein_coding chr13:50594402 chr13:50594405 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_88126 0 0 0 9 50594403 50594425 mRNA hsa-miR-20a KCNRG miRanda miRanda
7095 chr13 50594405 50594405 1 + G A UCEC 50594402 + 50594382 50594422 41 TGGCCAACGGAACAAATGTCCTCGGCTTACTGATTGACACT TGGCCAACGGAACAAATGTCCTCAGCTTACTGATTGACACT < 41bp 0.733041010694911 0.521103108245697 0.27553385 0.16533998 prediction 0.423875804898428 Functional Loss - KCNRG ENSG00000198553 CDS Human protein_coding chr13:50594402 chr13:50594405 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_88126 0 0 0 9 50594404 50594425 mRNA hsa-miR-93 KCNRG miRanda miRanda
7096 chr13 50594405 50594405 1 + G A UCEC 50594402 + 50594382 50594422 41 TGGCCAACGGAACAAATGTCCTCGGCTTACTGATTGACACT TGGCCAACGGAACAAATGTCCTCAGCTTACTGATTGACACT < 41bp 0.733041010694911 0.521103108245697 0.27553385 0.16533998 prediction 0.423875804898428 Functional Loss - KCNRG ENSG00000198553 CDS Human protein_coding chr13:50594402 chr13:50594405 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_88126 0 0 0 9 50594403 50594425 mRNA hsa-miR-106a KCNRG miRanda miRanda
7097 chr13 50594405 50594405 1 + G A UCEC 50594402 + 50594382 50594422 41 TGGCCAACGGAACAAATGTCCTCGGCTTACTGATTGACACT TGGCCAACGGAACAAATGTCCTCAGCTTACTGATTGACACT < 41bp 0.733041010694911 0.521103108245697 0.27553385 0.16533998 prediction 0.423875804898428 Functional Loss - KCNRG ENSG00000198553 CDS Human protein_coding chr13:50594402 chr13:50594405 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_88126 0 0 0 9 50594405 50594425 mRNA hsa-miR-106b KCNRG miRanda miRanda
7098 chr13 50594405 50594405 1 + G A UCEC 50594402 + 50594382 50594422 41 TGGCCAACGGAACAAATGTCCTCGGCTTACTGATTGACACT TGGCCAACGGAACAAATGTCCTCAGCTTACTGATTGACACT < 41bp 0.733041010694911 0.521103108245697 0.27553385 0.16533998 prediction 0.423875804898428 Functional Loss - KCNRG ENSG00000198553 CDS Human protein_coding chr13:50594402 chr13:50594405 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_88126 0 0 0 9 50594400 50594423 mRNA hsa-miR-301a KCNRG miRanda miRanda
7099 chr13 50594405 50594405 1 + G A UCEC 50594402 + 50594382 50594422 41 TGGCCAACGGAACAAATGTCCTCGGCTTACTGATTGACACT TGGCCAACGGAACAAATGTCCTCAGCTTACTGATTGACACT < 41bp 0.733041010694911 0.521103108245697 0.27553385 0.16533998 prediction 0.423875804898428 Functional Loss - KCNRG ENSG00000198553 CDS Human protein_coding chr13:50594402 chr13:50594405 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_88126 0 0 0 9 50594404 50594428 mRNA hsa-miR-340 KCNRG miRanda miRanda
7100 chr13 50594405 50594405 1 + G A UCEC 50594402 + 50594382 50594422 41 TGGCCAACGGAACAAATGTCCTCGGCTTACTGATTGACACT TGGCCAACGGAACAAATGTCCTCAGCTTACTGATTGACACT < 41bp 0.733041010694911 0.521103108245697 0.27553385 0.16533998 prediction 0.423875804898428 Functional Loss - KCNRG ENSG00000198553 CDS Human protein_coding chr13:50594402 chr13:50594405 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_88126 0 0 0 9 50594403 50594425 mRNA hsa-miR-20b KCNRG miRanda miRanda
7101 chr13 50594405 50594405 1 + G A UCEC 50594402 + 50594382 50594422 41 TGGCCAACGGAACAAATGTCCTCGGCTTACTGATTGACACT TGGCCAACGGAACAAATGTCCTCAGCTTACTGATTGACACT < 41bp 0.733041010694911 0.521103108245697 0.27553385 0.16533998 prediction 0.423875804898428 Functional Loss - KCNRG ENSG00000198553 CDS Human protein_coding chr13:50594402 chr13:50594405 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_88126 0 0 0 9 50594404 50594425 mRNA hsa-miR-519d KCNRG miRanda miRanda
7102 chr14 62547824 62547824 1 + G T LUAD 62547821 + 62547801 62547841 41 AGGGAGAAGGTCACCTTTGCCAAGCTGGAGCCCAGAGATGT AGGGAGAAGGTCACCTTTGCCAATCTGGAGCCCAGAGATGT < 41bp 0.711882648221299 0.305755061678967 0.4296046 0.23776612 prediction 0.423765296442598 Functional Loss - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62547821 chr14:62547824 nonsynonymous SNV 0.616 0 24 hm5C_associated_SNPs_88187 0 0 0 4 62547811 62547833 mRNA hsa-miR-24 SYT16 miRanda miRanda
7103 chr14 62547824 62547824 1 + G T LUAD 62547821 + 62547801 62547841 41 AGGGAGAAGGTCACCTTTGCCAAGCTGGAGCCCAGAGATGT AGGGAGAAGGTCACCTTTGCCAATCTGGAGCCCAGAGATGT < 41bp 0.711882648221299 0.305755061678967 0.4296046 0.23776612 prediction 0.423765296442598 Functional Loss - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62547821 chr14:62547824 nonsynonymous SNV 0.616 0 24 hm5C_associated_SNPs_88187 0 0 0 4 62547802 62547824 mRNA hsa-miR-182 SYT16 miRanda miRanda
7104 chr14 62547824 62547824 1 + G T LUAD 62547821 + 62547801 62547841 41 AGGGAGAAGGTCACCTTTGCCAAGCTGGAGCCCAGAGATGT AGGGAGAAGGTCACCTTTGCCAATCTGGAGCCCAGAGATGT < 41bp 0.711882648221299 0.305755061678967 0.4296046 0.23776612 prediction 0.423765296442598 Functional Loss - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62547821 chr14:62547824 nonsynonymous SNV 0.616 0 24 hm5C_associated_SNPs_88187 0 0 0 4 62547818 62547838 mRNA hsa-miR-330-5p SYT16 miRanda miRanda
7105 chr14 62547824 62547824 1 + G T LUAD 62547821 + 62547801 62547841 41 AGGGAGAAGGTCACCTTTGCCAAGCTGGAGCCCAGAGATGT AGGGAGAAGGTCACCTTTGCCAATCTGGAGCCCAGAGATGT < 41bp 0.711882648221299 0.305755061678967 0.4296046 0.23776612 prediction 0.423765296442598 Functional Loss - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62547821 chr14:62547824 nonsynonymous SNV 0.616 0 24 hm5C_associated_SNPs_88187 0 0 0 4 62547819 62547838 mRNA hsa-miR-326 SYT16 miRanda miRanda
7106 chr12 57921393 57921393 1 + C T HNSC 57921391 + 57921371 57921411 41 CTGGGCAAGGCCCCCTCCAACTCAGGGAGACCCCCCCAACT CTGGGCAAGGCCCCCTCCAACTTAGGGAGACCCCCCCAACT < 41bp 0.711869638993673 0.43714215502908 0.9255184 0.8624748 prediction 0.423739277987346 Functional Loss - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57921391 chr12:57921393 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_88199 0 0 1 2 57921377 57921398 mRNA hsa-miR-125b MBD6 miRanda miRanda
7107 chr12 57921393 57921393 1 + C T HNSC 57921391 + 57921371 57921411 41 CTGGGCAAGGCCCCCTCCAACTCAGGGAGACCCCCCCAACT CTGGGCAAGGCCCCCTCCAACTTAGGGAGACCCCCCCAACT < 41bp 0.711869638993673 0.43714215502908 0.9255184 0.8624748 prediction 0.423739277987346 Functional Loss - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57921391 chr12:57921393 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_88199 0 0 1 2 57921375 57921398 mRNA hsa-miR-125a-5p MBD6 miRanda miRanda
7108 chr3 196457870 196457870 1 + G A rs78867326 196457867 + 196457847 196457887 41 CTACCACTTTTCTCAGAGTTCCCGATTTTGAAATGCTGGGC CTACCACTTTTCTCAGAGTTCCCAATTTTGAAATGCTGGGC < 41bp 0.711866622156849 0.471544378747147 0.01897201 0.06348166 prediction 0.423733244313699 Functional Loss - PIGX ENSG00000163964 CDS Human protein_coding chr3:196457867 chr3:196457870 synonymous SNV . 0 24 hm5C_associated_SNPs_88204 0 0 1 1 196457864 196457886 mRNA hsa-miR-338-3p PIGX miRanda miRanda
7109 chr12 12044128 12044128 1 + G A rs188643374 12044125 + 12044105 12044145 41 GGGACACTTCTCTTGCAGACCAAGAGGGACCCTGGAGCACC GGGACACTTCTCTTGCAGACCAAAAGGGACCCTGGAGCACC < 41bp 0.71184376701117 0.485309263955994 0.4058498 0.06254098 prediction 0.42368753402234 Functional Loss - ETV6 ENSG00000139083 UTR3 Human protein_coding chr12:12044125 chr12:12044128 . . 0 24 hm5C_associated_SNPs_88224 0 0 0 2 12044127 12044148 mRNA hsa-miR-18a ETV6 miRanda miRanda
7110 chr12 12044128 12044128 1 + G A rs188643374 12044125 + 12044105 12044145 41 GGGACACTTCTCTTGCAGACCAAGAGGGACCCTGGAGCACC GGGACACTTCTCTTGCAGACCAAAAGGGACCCTGGAGCACC < 41bp 0.71184376701117 0.485309263955994 0.4058498 0.06254098 prediction 0.42368753402234 Functional Loss - ETV6 ENSG00000139083 UTR3 Human protein_coding chr12:12044125 chr12:12044128 . . 0 24 hm5C_associated_SNPs_88224 0 0 0 2 12044127 12044148 mRNA hsa-miR-18b ETV6 miRanda miRanda
7111 chr11 198215 198215 1 + G T COAD 198211 + 198191 198231 41 TTGTCCAGGTGACTACTTTCCAGAGAAATCCACCAAGTACG TTGTCCAGGTGACTACTTTCCAGATAAATCCACCAAGTACG < 41bp 0.71182826709572 0.499265224952478 0.71585125 0.38841352 prediction 0.423656534191439 Functional Loss - ODF3 ENSG00000177947 CDS Human protein_coding chr11:198211 chr11:198215 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_88238 0 0 0 3 198195 198216 mRNA hsa-miR-330-5p ODF3 miRanda miRanda
7112 chr11 198215 198215 1 + G T COAD 198211 + 198191 198231 41 TTGTCCAGGTGACTACTTTCCAGAGAAATCCACCAAGTACG TTGTCCAGGTGACTACTTTCCAGATAAATCCACCAAGTACG < 41bp 0.71182826709572 0.499265224952478 0.71585125 0.38841352 prediction 0.423656534191439 Functional Loss - ODF3 ENSG00000177947 CDS Human protein_coding chr11:198211 chr11:198215 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_88238 0 0 0 3 198197 198216 mRNA hsa-miR-326 ODF3 miRanda miRanda
7113 chr11 198215 198215 1 + G T COAD 198211 + 198191 198231 41 TTGTCCAGGTGACTACTTTCCAGAGAAATCCACCAAGTACG TTGTCCAGGTGACTACTTTCCAGATAAATCCACCAAGTACG < 41bp 0.71182826709572 0.499265224952478 0.71585125 0.38841352 prediction 0.423656534191439 Functional Loss - ODF3 ENSG00000177947 CDS Human protein_coding chr11:198211 chr11:198215 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_88238 0 0 0 3 198201 198222 mRNA hsa-miR-876-5p ODF3 miRanda miRanda
7114 chr2 85662864 85662864 1 + G T COAD 85662860 + 85662840 85662880 41 TTCACCCTGGCAGTGCTTCTCCGAGGCCGGGTCTTCAACAT TTCACCCTGGCAGTGCTTCTCCGATGCCGGGTCTTCAACAT < 41bp 0.72742405134746 0.515598210507028 0.9257374 0.38751152 prediction 0.423651681680863 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85662860 chr2:85662864 nonsynonymous SNV 0.527 4 25 hm5C_associated_SNPs_88239 0 0 0 3 85662862 85662884 mRNA hsa-miR-1 SH2D6 miRanda miRanda
7115 chr2 85662864 85662864 1 + G T COAD 85662860 + 85662840 85662880 41 TTCACCCTGGCAGTGCTTCTCCGAGGCCGGGTCTTCAACAT TTCACCCTGGCAGTGCTTCTCCGATGCCGGGTCTTCAACAT < 41bp 0.72742405134746 0.515598210507028 0.9257374 0.38751152 prediction 0.423651681680863 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85662860 chr2:85662864 nonsynonymous SNV 0.527 4 25 hm5C_associated_SNPs_88239 0 0 0 3 85662862 85662884 mRNA hsa-miR-206 SH2D6 miRanda miRanda
7116 chr2 85662864 85662864 1 + G T COAD 85662860 + 85662840 85662880 41 TTCACCCTGGCAGTGCTTCTCCGAGGCCGGGTCTTCAACAT TTCACCCTGGCAGTGCTTCTCCGATGCCGGGTCTTCAACAT < 41bp 0.72742405134746 0.515598210507028 0.9257374 0.38751152 prediction 0.423651681680863 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85662860 chr2:85662864 nonsynonymous SNV 0.527 4 25 hm5C_associated_SNPs_88239 0 0 0 3 85662859 85662880 mRNA hsa-miR-653 SH2D6 miRanda miRanda
7117 chr16 2514737 2514737 1 + G A rs564304984 2514734 + 2514714 2514754 41 GTGTCTTCCCTGGCACTGTGCTCGGGGACCCAGAGATGCCT GTGTCTTCCCTGGCACTGTGCTCAGGGACCCAGAGATGCCT < 41bp 0.71178853262674 0.489791131938585 0.21307278 0.09568906 prediction 0.423577065253481 Functional Loss - C16orf59 ENSG00000162062 UTR3 Human protein_coding chr16:2514734 chr16:2514737 . . 0 24 hm5C_associated_SNPs_88264 0 0 1 2 2514727 2514749 mRNA hsa-miR-330-5p C16orf59 miRanda miRanda
7118 chr16 2514737 2514737 1 + G A rs564304984 2514734 + 2514714 2514754 41 GTGTCTTCCCTGGCACTGTGCTCGGGGACCCAGAGATGCCT GTGTCTTCCCTGGCACTGTGCTCAGGGACCCAGAGATGCCT < 41bp 0.71178853262674 0.489791131938585 0.21307278 0.09568906 prediction 0.423577065253481 Functional Loss - C16orf59 ENSG00000162062 UTR3 Human protein_coding chr16:2514734 chr16:2514737 . . 0 24 hm5C_associated_SNPs_88264 0 0 1 2 2514730 2514749 mRNA hsa-miR-326 C16orf59 miRanda miRanda
7119 chr16 87678387 87678387 1 + G A LUSC 87678384 + 87678364 87678404 41 GACAAACGCTCCGGCTTCGGCGTGAGCCAGCGCTCGGACGG GACAAACGCTCCGGCTTCGGCGTAAGCCAGCGCTCGGACGG < 41bp 0.822349447491088 0.610590742921845 0.48549104 0.35697865 prediction 0.423517409138486 Functional Loss - JPH3 ENSG00000154118 CDS Human protein_coding chr16:87678384 chr16:87678387 synonymous SNV . 0 24 hm5C_associated_SNPs_88286 0 0 1 2 87678373 87678394 mRNA hsa-miR-149 JPH3 miRanda miRanda
7120 chr16 87678387 87678387 1 + G A LUSC 87678384 + 87678364 87678404 41 GACAAACGCTCCGGCTTCGGCGTGAGCCAGCGCTCGGACGG GACAAACGCTCCGGCTTCGGCGTAAGCCAGCGCTCGGACGG < 41bp 0.822349447491088 0.610590742921845 0.48549104 0.35697865 prediction 0.423517409138486 Functional Loss - JPH3 ENSG00000154118 CDS Human protein_coding chr16:87678384 chr16:87678387 synonymous SNV . 0 24 hm5C_associated_SNPs_88286 0 0 1 2 87678379 87678401 mRNA hsa-miR-615-3p JPH3 miRanda miRanda
7121 chr16 779346 779346 1 + C T rs556522308 779344 + 779324 779364 41 CCCCGCCGACGTCCTGGAGGCGCTATGCAAGGAGCGGGCGC CCCCGCCGACGTCCTGGAGGCGTTATGCAAGGAGCGGGCGC < 41bp 0.76509113391334 0.553341231825464 0.34760684 0.39622098 prediction 0.423499804175752 Functional Loss - HAGHL ENSG00000103253 CDS Human protein_coding chr16:779344 chr16:779346 synonymous SNV . 0 23 hm5C_associated_SNPs_88295 0 0 1 1 779333 779353 mRNA hsa-miR-153 HAGHL miRanda miRanda
7122 chr6 25780503 25780503 1 + C T rs61120493 25780501 + 25780481 25780521 41 AGTATTAAGGAGTTCAGTGTCTCGGGAGGGCAGATAACTTT AGTATTAAGGAGTTCAGTGTCTTGGGAGGGCAGATAACTTT < 41bp 0.711684130626791 0.494565849421244 0.040719718 0.10278121 prediction 0.423368261253583 Functional Loss - SLC17A4 ENSG00000146039 UTR3 Human protein_coding chr6:25780501 chr6:25780503 . . 0 23 hm5C_associated_SNPs_88356 0 0 0 2 25780482 25780504 mRNA hsa-miR-146a SLC17A4 miRanda miRanda
7123 chr6 25780503 25780503 1 + C T rs61120493 25780501 + 25780481 25780521 41 AGTATTAAGGAGTTCAGTGTCTCGGGAGGGCAGATAACTTT AGTATTAAGGAGTTCAGTGTCTTGGGAGGGCAGATAACTTT < 41bp 0.711684130626791 0.494565849421244 0.040719718 0.10278121 prediction 0.423368261253583 Functional Loss - SLC17A4 ENSG00000146039 UTR3 Human protein_coding chr6:25780501 chr6:25780503 . . 0 23 hm5C_associated_SNPs_88356 0 0 0 2 25780482 25780504 mRNA hsa-miR-146b-5p SLC17A4 miRanda miRanda
7124 chr4 77959053 77959053 1 + A C rs115625407 77959052 + 77959032 77959072 41 TTCTCTGCTTTGTGACTCACCAGCAGTAACACACACAATCC TTCTCTGCTTTGTGACTCACCCGCAGTAACACACACAATCC < 41bp 0.772472965836912 0.560814319352047 0.1789279 0.033073097 prediction 0.42331729296973 Functional Loss - SEPT11 ENSG00000138758 UTR3 Human protein_coding chr4:77959052 chr4:77959053 . . 0 22 hm5C_associated_SNPs_88381 0 0 1 1 77959032 77959056 mRNA hsa-miR-138 SEPT11 miRanda miRanda
7125 chr6 3287169 3287169 1 + G A CESC 3287166 + 3287146 3287186 41 AGCAGCAGCCCTCCCCTGCGCCCGAGGAATCGGACCACCAC AGCAGCAGCCCTCCCCTGCGCCCAAGGAATCGGACCACCAC < 41bp 0.798161465977383 0.586559744592394 0.15888432 0.13222891 prediction 0.423203442769977 Functional Loss - SLC22A23 ENSG00000137266 CDS Human protein_coding chr6:3287166 chr6:3287169 synonymous SNV . 0 24 hm5C_associated_SNPs_88430 0 0 0 1 3287166 3287189 mRNA hsa-miR-138 LOC100422781 miRanda miRanda
7126 chr10 100004536 100004536 1 + G C rs112832441 100004532 + 100004512 100004552 41 CCGCTCCAGCTGCACTGCAGCCAGGGGGGATACCAGCTTCA CCGCTCCAGCTGCACTGCAGCCAGCGGGGATACCAGCTTCA < 41bp 0.711594707099725 0.445120468209866 0.8205867 0.1725057 prediction 0.423189414199451 Functional Loss - R3HCC1L ENSG00000166024 UTR3 Human protein_coding chr10:100004532 chr10:100004536 . . 0 25 hm5C_associated_SNPs_88434 0 0 1 1 100004516 100004537 mRNA hsa-miR-370 C10orf28 miRanda miRanda
7127 chr1 43042758 43042758 1 + C T SKCM 43042756 + 43042736 43042776 41 ACAAAGATGTGCTCTTCACTCACGGCAGAGTACAAGCACTG ACAAAGATGTGCTCTTCACTCATGGCAGAGTACAAGCACTG < 41bp 0.711572804087796 0.431887907246143 0.4375174 0.7046115 prediction 0.423145608175592 Functional Loss - CCDC30 ENSG00000186409 CDS Human protein_coding chr1:43042756 chr1:43042758 nonsynonymous SNV 0.668 0 23 hm5C_associated_SNPs_88460 0 0 0 1 43042758 43042781 mRNA hsa-miR-139-5p CCDC30 miRanda miRanda
7128 chr1 43042759 43042759 1 + G A STAD 43042756 + 43042736 43042776 41 ACAAAGATGTGCTCTTCACTCACGGCAGAGTACAAGCACTG ACAAAGATGTGCTCTTCACTCACAGCAGAGTACAAGCACTG < 41bp 0.711572804087796 0.479881420971621 0.4375174 0.10741061 prediction 0.423145608175592 Functional Loss - CCDC30 ENSG00000186409 CDS Human protein_coding chr1:43042756 chr1:43042759 synonymous SNV . 0 24 hm5C_associated_SNPs_88461 0 0 0 2 43042758 43042781 mRNA hsa-miR-139-5p CCDC30 miRanda miRanda
7129 chr1 43042759 43042759 1 + G A STAD 43042756 + 43042736 43042776 41 ACAAAGATGTGCTCTTCACTCACGGCAGAGTACAAGCACTG ACAAAGATGTGCTCTTCACTCACAGCAGAGTACAAGCACTG < 41bp 0.711572804087796 0.479881420971621 0.4375174 0.10741061 prediction 0.423145608175592 Functional Loss - CCDC30 ENSG00000186409 CDS Human protein_coding chr1:43042756 chr1:43042759 synonymous SNV . 0 24 hm5C_associated_SNPs_88461 0 0 0 2 43042759 43042785 mRNA hsa-miR-370 CCDC30 miRanda miRanda
7130 chr19 9958878 9958878 1 + A C rs2010457 9958877 + 9958857 9958897 41 CCACCCTGAGGGGTAGAGGCCAGGAGGGTCTGGGCATTGGG CCACCCTGAGGGGTAGAGGCCCGGAGGGTCTGGGCATTGGG < 41bp 0.835177678598265 0.623617804379148 0.7032204 0.28615493 prediction 0.423119748438234 Functional Loss - PIN1 ENSG00000127445 UTR3 Human protein_coding chr19:9958877 chr19:9958878 . . 0 22 hm5C_associated_SNPs_88478 0 0 1 1 9958878 9958895 mRNA hsa-miR-365 PIN1 miRanda miRanda
7131 chr14 76548655 76548655 1 + G A SKCM 76548652 + 76548632 76548672 41 TTGCAGATATTCCTATCATTCCGGATCTGGAGGAAGTACAG TTGCAGATATTCCTATCATTCCGAATCTGGAGGAAGTACAG < 41bp 0.791297508316815 0.57978293265732 0.38375464 0.17681706 prediction 0.42302915131899 Functional Loss - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76548652 chr14:76548655 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_88519 0 0 0 1 76548653 76548674 mRNA hsa-miR-486-5p C14orf179 miRanda miRanda
7132 chr3 38350542 38350542 1 + C T rs115112284 38350539 + 38350519 38350559 41 GTGTTGCTGACAGGGATCGCCTACAGTCTTCCCCACTGGCA GTGTTGCTGACAGGGATCGCCTATAGTCTTCCCCACTGGCA < 41bp 0.735353892629044 0.523884138941971 0.8739003 0.25307906 prediction 0.422939507374146 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38350539 chr3:38350542 synonymous SNV . 0 24 hm5C_associated_SNPs_88562 0 0 0 3 38350541 38350563 mRNA hsa-miR-22 SLC22A14 miRanda miRanda
7133 chr3 38350542 38350542 1 + C T rs115112284 38350539 + 38350519 38350559 41 GTGTTGCTGACAGGGATCGCCTACAGTCTTCCCCACTGGCA GTGTTGCTGACAGGGATCGCCTATAGTCTTCCCCACTGGCA < 41bp 0.735353892629044 0.523884138941971 0.8739003 0.25307906 prediction 0.422939507374146 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38350539 chr3:38350542 synonymous SNV . 0 24 hm5C_associated_SNPs_88562 0 0 0 3 38350525 38350551 mRNA hsa-miR-7 SLC22A14 miRanda miRanda
7134 chr3 38350542 38350542 1 + C T rs115112284 38350539 + 38350519 38350559 41 GTGTTGCTGACAGGGATCGCCTACAGTCTTCCCCACTGGCA GTGTTGCTGACAGGGATCGCCTATAGTCTTCCCCACTGGCA < 41bp 0.735353892629044 0.523884138941971 0.8739003 0.25307906 prediction 0.422939507374146 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38350539 chr3:38350542 synonymous SNV . 0 24 hm5C_associated_SNPs_88562 0 0 0 3 38350534 38350555 mRNA hsa-miR-491-5p SLC22A14 miRanda miRanda
7135 chr12 56113310 56113310 1 + C T COAD 56113308 + 56113288 56113328 41 TGGGGATGTGGAGAACTGGGCTCGGAGCATCGAGCTGGACA TGGGGATGTGGAGAACTGGGCTTGGAGCATCGAGCTGGACA < 41bp 0.711463408517675 0.449369467452374 0.51462054 0.4621653 prediction 0.422926817035351 Functional Loss - BLOC1S1 ENSG00000135441 CDS Human protein_coding chr12:56113308 chr12:56113310 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_88574 0 0 1 1 56113292 56113313 mRNA hsa-miR-615-3p BLOC1S1 miRanda miRanda
7136 chr2 232577559 232577559 1 + T C CESC 232577558 + 232577538 232577578 41 CAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAA CAGAAGACCGACGAGGATGACCAGACAGCAAAAAAGGAAAA < 41bp 0.711453145048101 0.465102354316715 0.15961435 0.33511373 prediction 0.422906290096202 Functional Loss - PTMA ENSG00000187514 CDS Human protein_coding chr2:232577558 chr2:232577559 stoploss 1.000 0 22 hm5C_associated_SNPs_88580 0 0 1 2 232577552 232577572 mRNA hsa-miR-129-5p PTMA miRanda miRanda
7137 chr2 232577559 232577559 1 + T C CESC 232577558 + 232577538 232577578 41 CAGAAGACCGACGAGGATGACTAGACAGCAAAAAAGGAAAA CAGAAGACCGACGAGGATGACCAGACAGCAAAAAAGGAAAA < 41bp 0.711453145048101 0.465102354316715 0.15961435 0.33511373 prediction 0.422906290096202 Functional Loss - PTMA ENSG00000187514 CDS Human protein_coding chr2:232577558 chr2:232577559 stoploss 1.000 0 22 hm5C_associated_SNPs_88580 0 0 1 2 232577549 232577569 mRNA hsa-miR-599 PTMA miRanda miRanda
7138 chr17 4442818 4442818 1 + G A rs73335853 4442815 + 4442795 4442835 41 CTTGCCTTTTTCCGTGCCAGCGCGGACAGTGGTGATTTGCC CTTGCCTTTTTCCGTGCCAGCGCAGACAGTGGTGATTTGCC < 41bp 0.711445671411973 0.490422379647957 0.69998205 0.49188194 prediction 0.422891342823946 Functional Loss - MYBBP1A ENSG00000132382 CDS Human protein_coding chr17:4442815 chr17:4442818 synonymous SNV . 0 24 hm5C_associated_SNPs_88586 0 0 0 1 4442809 4442830 mRNA hsa-miR-197 SPNS2 miRanda miRanda
7139 chr16 90109651 90109651 1 - C T BLCA 90109654 - 90109634 90109674 41 CCCACGTTGTCCAGAGGGATCCCGAAGGCCAGCAGCTTTGC CCCACGTTGTCCAGAGGGATCCCAAAGGCCAGCAGCTTTGC < 41bp 0.791644238988782 0.580222829646081 0.5267081 0.1556294 prediction 0.422842818685403 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90109654 chr16:90109651 synonymous SNV . 0 24 hm5C_associated_SNPs_88606 0 0 0 8 90109635 90109657 mRNA hsa-miR-93 LOC100130015 miRanda miRanda
7140 chr16 90109651 90109651 1 - C T BLCA 90109654 - 90109634 90109674 41 CCCACGTTGTCCAGAGGGATCCCGAAGGCCAGCAGCTTTGC CCCACGTTGTCCAGAGGGATCCCAAAGGCCAGCAGCTTTGC < 41bp 0.791644238988782 0.580222829646081 0.5267081 0.1556294 prediction 0.422842818685403 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90109654 chr16:90109651 synonymous SNV . 0 24 hm5C_associated_SNPs_88606 0 0 0 8 90109635 90109656 mRNA hsa-miR-320a LOC100130015 miRanda miRanda
7141 chr16 90109651 90109651 1 - C T BLCA 90109654 - 90109634 90109674 41 CCCACGTTGTCCAGAGGGATCCCGAAGGCCAGCAGCTTTGC CCCACGTTGTCCAGAGGGATCCCAAAGGCCAGCAGCTTTGC < 41bp 0.791644238988782 0.580222829646081 0.5267081 0.1556294 prediction 0.422842818685403 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90109654 chr16:90109651 synonymous SNV . 0 24 hm5C_associated_SNPs_88606 0 0 0 8 90109636 90109658 mRNA hsa-miR-373 LOC100130015 miRanda miRanda
7142 chr16 90109651 90109651 1 - C T BLCA 90109654 - 90109634 90109674 41 CCCACGTTGTCCAGAGGGATCCCGAAGGCCAGCAGCTTTGC CCCACGTTGTCCAGAGGGATCCCAAAGGCCAGCAGCTTTGC < 41bp 0.791644238988782 0.580222829646081 0.5267081 0.1556294 prediction 0.422842818685403 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90109654 chr16:90109651 synonymous SNV . 0 24 hm5C_associated_SNPs_88606 0 0 0 8 90109636 90109658 mRNA hsa-miR-520a-3p LOC100130015 miRanda miRanda
7143 chr16 90109651 90109651 1 - C T BLCA 90109654 - 90109634 90109674 41 CCCACGTTGTCCAGAGGGATCCCGAAGGCCAGCAGCTTTGC CCCACGTTGTCCAGAGGGATCCCAAAGGCCAGCAGCTTTGC < 41bp 0.791644238988782 0.580222829646081 0.5267081 0.1556294 prediction 0.422842818685403 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90109654 chr16:90109651 synonymous SNV . 0 24 hm5C_associated_SNPs_88606 0 0 0 8 90109636 90109658 mRNA hsa-miR-520d-3p LOC100130015 miRanda miRanda
7144 chr16 90109651 90109651 1 - C T BLCA 90109654 - 90109634 90109674 41 CCCACGTTGTCCAGAGGGATCCCGAAGGCCAGCAGCTTTGC CCCACGTTGTCCAGAGGGATCCCAAAGGCCAGCAGCTTTGC < 41bp 0.791644238988782 0.580222829646081 0.5267081 0.1556294 prediction 0.422842818685403 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90109654 chr16:90109651 synonymous SNV . 0 24 hm5C_associated_SNPs_88606 0 0 0 8 90109635 90109656 mRNA hsa-miR-320b LOC100130015 miRanda miRanda
7145 chr16 90109651 90109651 1 - C T BLCA 90109654 - 90109634 90109674 41 CCCACGTTGTCCAGAGGGATCCCGAAGGCCAGCAGCTTTGC CCCACGTTGTCCAGAGGGATCCCAAAGGCCAGCAGCTTTGC < 41bp 0.791644238988782 0.580222829646081 0.5267081 0.1556294 prediction 0.422842818685403 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90109654 chr16:90109651 synonymous SNV . 0 24 hm5C_associated_SNPs_88606 0 0 0 8 90109635 90109654 mRNA hsa-miR-320c LOC100130015 miRanda miRanda
7146 chr16 90109651 90109651 1 - C T BLCA 90109654 - 90109634 90109674 41 CCCACGTTGTCCAGAGGGATCCCGAAGGCCAGCAGCTTTGC CCCACGTTGTCCAGAGGGATCCCAAAGGCCAGCAGCTTTGC < 41bp 0.791644238988782 0.580222829646081 0.5267081 0.1556294 prediction 0.422842818685403 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90109654 chr16:90109651 synonymous SNV . 0 24 hm5C_associated_SNPs_88606 0 0 0 8 90109635 90109653 mRNA hsa-miR-320d LOC100130015 miRanda miRanda
7147 chr21 34635344 34635344 1 + G A LUAD 34635341 + 34635321 34635361 41 CAGAATCCCAGTTGATAGACCCGGAGTCCGAGGAGGAGCCT CAGAATCCCAGTTGATAGACCCGAAGTCCGAGGAGGAGCCT < 41bp 0.711383193240704 0.471732539260054 0.80018806 0.11961228 prediction 0.422766386481408 Functional Loss - IFNAR2 ENSG00000159110 CDS Human protein_coding chr21:34635341 chr21:34635344 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_88640 0 0 1 1 34635325 34635351 mRNA hsa-miR-127-3p IFNAR2 miRanda miRanda
7148 chr10 94410215 94410215 1 + G A SKCM 94410212 + 94410192 94410232 41 ATACTGAAGAACCTCTAAGTCAAGAGCCATCTGTAGATGCT ATACTGAAGAACCTCTAAGTCAAAAGCCATCTGTAGATGCT < 41bp 0.778419914955459 0.567095336542856 0.38427883 0.17723703 prediction 0.422649156825206 Functional Loss - KIF11 ENSG00000138160 CDS Human protein_coding chr10:94410212 chr10:94410215 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_88687 0 0 1 1 94410213 94410235 mRNA hsa-miR-338-3p KIF11 miRanda miRanda
7149 chr3 157271115 157271115 1 + G T COAD 157271112 + 157271092 157271132 41 ACTGATACGTCCGGAGAGCACTTGACCTGCCTTAGAAGGTA ACTGATACGTCCGGAGAGCACTTTACCTGCCTTAGAAGGTA < 41bp 0.711305734489058 0.340652405307658 0.095496505 0.07949096 prediction 0.422611468978116 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271112 chr3:157271115 nonsynonymous SNV 0.025 3 24 hm5C_associated_SNPs_88710 0 0 0 13 157271090 157271115 mRNA hsa-miR-302a C3orf55 miRanda miRanda
7150 chr3 157271115 157271115 1 + G T COAD 157271112 + 157271092 157271132 41 ACTGATACGTCCGGAGAGCACTTGACCTGCCTTAGAAGGTA ACTGATACGTCCGGAGAGCACTTTACCTGCCTTAGAAGGTA < 41bp 0.711305734489058 0.340652405307658 0.095496505 0.07949096 prediction 0.422611468978116 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271112 chr3:157271115 nonsynonymous SNV 0.025 3 24 hm5C_associated_SNPs_88710 0 0 0 13 157271090 157271115 mRNA hsa-miR-302b C3orf55 miRanda miRanda
7151 chr3 157271115 157271115 1 + G T COAD 157271112 + 157271092 157271132 41 ACTGATACGTCCGGAGAGCACTTGACCTGCCTTAGAAGGTA ACTGATACGTCCGGAGAGCACTTTACCTGCCTTAGAAGGTA < 41bp 0.711305734489058 0.340652405307658 0.095496505 0.07949096 prediction 0.422611468978116 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271112 chr3:157271115 nonsynonymous SNV 0.025 3 24 hm5C_associated_SNPs_88710 0 0 0 13 157271090 157271115 mRNA hsa-miR-302c C3orf55 miRanda miRanda
7152 chr3 157271115 157271115 1 + G T COAD 157271112 + 157271092 157271132 41 ACTGATACGTCCGGAGAGCACTTGACCTGCCTTAGAAGGTA ACTGATACGTCCGGAGAGCACTTTACCTGCCTTAGAAGGTA < 41bp 0.711305734489058 0.340652405307658 0.095496505 0.07949096 prediction 0.422611468978116 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271112 chr3:157271115 nonsynonymous SNV 0.025 3 24 hm5C_associated_SNPs_88710 0 0 0 13 157271090 157271115 mRNA hsa-miR-302d C3orf55 miRanda miRanda
7153 chr3 157271115 157271115 1 + G T COAD 157271112 + 157271092 157271132 41 ACTGATACGTCCGGAGAGCACTTGACCTGCCTTAGAAGGTA ACTGATACGTCCGGAGAGCACTTTACCTGCCTTAGAAGGTA < 41bp 0.711305734489058 0.340652405307658 0.095496505 0.07949096 prediction 0.422611468978116 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271112 chr3:157271115 nonsynonymous SNV 0.025 3 24 hm5C_associated_SNPs_88710 0 0 0 13 157271090 157271115 mRNA hsa-miR-372 C3orf55 miRanda miRanda
7154 chr3 157271115 157271115 1 + G T COAD 157271112 + 157271092 157271132 41 ACTGATACGTCCGGAGAGCACTTGACCTGCCTTAGAAGGTA ACTGATACGTCCGGAGAGCACTTTACCTGCCTTAGAAGGTA < 41bp 0.711305734489058 0.340652405307658 0.095496505 0.07949096 prediction 0.422611468978116 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271112 chr3:157271115 nonsynonymous SNV 0.025 3 24 hm5C_associated_SNPs_88710 0 0 0 13 157271090 157271115 mRNA hsa-miR-373 C3orf55 miRanda miRanda
7155 chr3 157271115 157271115 1 + G T COAD 157271112 + 157271092 157271132 41 ACTGATACGTCCGGAGAGCACTTGACCTGCCTTAGAAGGTA ACTGATACGTCCGGAGAGCACTTTACCTGCCTTAGAAGGTA < 41bp 0.711305734489058 0.340652405307658 0.095496505 0.07949096 prediction 0.422611468978116 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271112 chr3:157271115 nonsynonymous SNV 0.025 3 24 hm5C_associated_SNPs_88710 0 0 0 13 157271094 157271115 mRNA hsa-miR-520e C3orf55 miRanda miRanda
7156 chr3 157271115 157271115 1 + G T COAD 157271112 + 157271092 157271132 41 ACTGATACGTCCGGAGAGCACTTGACCTGCCTTAGAAGGTA ACTGATACGTCCGGAGAGCACTTTACCTGCCTTAGAAGGTA < 41bp 0.711305734489058 0.340652405307658 0.095496505 0.07949096 prediction 0.422611468978116 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271112 chr3:157271115 nonsynonymous SNV 0.025 3 24 hm5C_associated_SNPs_88710 0 0 0 13 157271097 157271115 mRNA hsa-miR-520a-3p C3orf55 miRanda miRanda
7157 chr3 157271115 157271115 1 + G T COAD 157271112 + 157271092 157271132 41 ACTGATACGTCCGGAGAGCACTTGACCTGCCTTAGAAGGTA ACTGATACGTCCGGAGAGCACTTTACCTGCCTTAGAAGGTA < 41bp 0.711305734489058 0.340652405307658 0.095496505 0.07949096 prediction 0.422611468978116 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271112 chr3:157271115 nonsynonymous SNV 0.025 3 24 hm5C_associated_SNPs_88710 0 0 0 13 157271094 157271115 mRNA hsa-miR-520b C3orf55 miRanda miRanda
7158 chr3 157271115 157271115 1 + G T COAD 157271112 + 157271092 157271132 41 ACTGATACGTCCGGAGAGCACTTGACCTGCCTTAGAAGGTA ACTGATACGTCCGGAGAGCACTTTACCTGCCTTAGAAGGTA < 41bp 0.711305734489058 0.340652405307658 0.095496505 0.07949096 prediction 0.422611468978116 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271112 chr3:157271115 nonsynonymous SNV 0.025 3 24 hm5C_associated_SNPs_88710 0 0 0 13 157271093 157271115 mRNA hsa-miR-520c-3p C3orf55 miRanda miRanda
7159 chr3 157271115 157271115 1 + G T COAD 157271112 + 157271092 157271132 41 ACTGATACGTCCGGAGAGCACTTGACCTGCCTTAGAAGGTA ACTGATACGTCCGGAGAGCACTTTACCTGCCTTAGAAGGTA < 41bp 0.711305734489058 0.340652405307658 0.095496505 0.07949096 prediction 0.422611468978116 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271112 chr3:157271115 nonsynonymous SNV 0.025 3 24 hm5C_associated_SNPs_88710 0 0 0 13 157271095 157271115 mRNA hsa-miR-520d-3p C3orf55 miRanda miRanda
7160 chr3 157271115 157271115 1 + G T COAD 157271112 + 157271092 157271132 41 ACTGATACGTCCGGAGAGCACTTGACCTGCCTTAGAAGGTA ACTGATACGTCCGGAGAGCACTTTACCTGCCTTAGAAGGTA < 41bp 0.711305734489058 0.340652405307658 0.095496505 0.07949096 prediction 0.422611468978116 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271112 chr3:157271115 nonsynonymous SNV 0.025 3 24 hm5C_associated_SNPs_88710 0 0 0 13 157271107 157271129 mRNA hsa-miR-216b C3orf55 miRanda miRanda
7161 chr3 157271115 157271115 1 + G T COAD 157271112 + 157271092 157271132 41 ACTGATACGTCCGGAGAGCACTTGACCTGCCTTAGAAGGTA ACTGATACGTCCGGAGAGCACTTTACCTGCCTTAGAAGGTA < 41bp 0.711305734489058 0.340652405307658 0.095496505 0.07949096 prediction 0.422611468978116 Functional Loss - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157271112 chr3:157271115 nonsynonymous SNV 0.025 3 24 hm5C_associated_SNPs_88710 0 0 0 13 157271098 157271115 mRNA hsa-miR-302e C3orf55 miRanda miRanda
7162 chr20 29628282 29628282 1 + G A BLCA 29628279 + 29628259 29628299 41 CTTTATTAGATGCAATGAAGCAGGGGACATAGAAGCAAAAA CTTTATTAGATGCAATGAAGCAGAGGACATAGAAGCAAAAA < 41bp 0.753787855441794 0.542549342220683 0.92015815 0.5968413 prediction 0.422477026442222 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29628279 chr20:29628282 nonsynonymous SNV 0.956 1 24 hm5C_associated_SNPs_88771 0 0 0 1 29628281 29628300 mRNA hsa-miR-129-5p FRG1B miRanda miRanda
7163 chr6 7881436 7881436 1 + G A rs115918595 7881433 + 7881413 7881453 41 CTATACAGCATACCACGCCACAGGGTTAGAACCAACGAAGA CTATACAGCATACCACGCCACAGAGTTAGAACCAACGAAGA < 41bp 0.761110679236351 0.549941191687047 0.2409141 0.049563706 prediction 0.422338975098606 Functional Loss - BMP6 ENSG00000153162 UTR3 Human protein_coding chr6:7881433 chr6:7881436 . . 0 24 hm5C_associated_SNPs_88825 0 0 0 2 7881416 7881439 mRNA hsa-miR-10a BMP6 miRanda miRanda
7164 chr6 7881436 7881436 1 + G A rs115918595 7881433 + 7881413 7881453 41 CTATACAGCATACCACGCCACAGGGTTAGAACCAACGAAGA CTATACAGCATACCACGCCACAGAGTTAGAACCAACGAAGA < 41bp 0.761110679236351 0.549941191687047 0.2409141 0.049563706 prediction 0.422338975098606 Functional Loss - BMP6 ENSG00000153162 UTR3 Human protein_coding chr6:7881433 chr6:7881436 . . 0 24 hm5C_associated_SNPs_88825 0 0 0 2 7881416 7881439 mRNA hsa-miR-10b BMP6 miRanda miRanda
7165 chr1 236341877 236341877 1 + T C LAML 236341876 + 236341856 236341896 41 GTGCTGTGTGCCGTCTCTCTCTCCATCTGTCTCTACAAAAT GTGCTGTGTGCCGTCTCTCTCCCCATCTGTCTCTACAAAAT < 41bp 0.858145214400136 0.647014638263844 0.917173 0.020070374 prediction 0.422261152272585 Functional Loss - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236341876 chr1:236341877 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_88859 0 0 1 1 236341859 236341880 mRNA hsa-miR-185 GPR137B miRanda miRanda
7166 chr1 230391065 230391065 1 + G T OV 230391063 + 230391043 230391083 41 GCAGCACCCCTACACGTTCCCGGGTGGCAGTGGCACTGTCT GCAGCACCCCTACACGTTCCCGTGTGGCAGTGGCACTGTCT < 41bp 0.711120101331606 0.348404782219874 0.8877245 0.074517995 prediction 0.422240202663213 Functional Loss - GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230391063 chr1:230391065 nonsynonymous SNV 0.763 4 23 hm5C_associated_SNPs_88875 0 0 1 1 230391056 230391078 mRNA hsa-miR-874 GALNT2 miRanda miRanda
7167 chr11 18232398 18232398 1 + C T rs150582335 18232396 + 18232376 18232416 41 CCTTTGACAGGGAACCTAATCCCCAAGATAAGATTCTTTTT CCTTTGACAGGGAACCTAATCCTCAAGATAAGATTCTTTTT < 41bp 0.711049230807363 0.480562218130709 0.14202175 0.10769564 prediction 0.422098461614726 Functional Loss - LOC494141 ENSG00000189332 UTR3 Human transcribed_unprocessed_pseudogene chr11:18232396 chr11:18232398 . . 0 23 hm5C_associated_SNPs_88943 0 0 0 1 18232395 18232415 mRNA hsa-miR-186 LOC494141 miRanda miRanda
7168 chr16 2257325 2257325 1 + C T rs35003025 2257322 + 2257302 2257342 41 CACATCGATCCCGACGCCAGCTACATGGCAGCTGTCAATAG CACATCGATCCCGACGCCAGCTATATGGCAGCTGTCAATAG < 41bp 0.748306283043811 0.537291344673626 0.1300272 0.09058282 prediction 0.422029876740369 Functional Loss - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2257322 chr16:2257325 synonymous SNV . 0 24 hm5C_associated_SNPs_88977 0 0 1 1 2257316 2257335 mRNA hsa-miR-22 MLST8 miRanda miRanda
7169 chr7 6063283 6063283 1 - C T rs4560 6063286 - 6063266 6063306 41 AGGGCCGTGTTAAAAGGAGCCAGGTTTTCACAAGACCTCAT AGGGCCGTGTTAAAAGGAGCCAGATTTTCACAAGACCTCAT < 41bp 0.777581887424129 0.56657939042779 0.46025968 0.3103541 prediction 0.422004993992677 Functional Loss - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6063286 chr7:6063283 synonymous SNV . 0 24 hm5C_associated_SNPs_88992 0 1 0 2 6063283 6063305 mRNA hsa-miR-149 EIF2AK1 miRanda miRanda
7170 chr7 6063283 6063283 1 - C T rs4560 6063286 - 6063266 6063306 41 AGGGCCGTGTTAAAAGGAGCCAGGTTTTCACAAGACCTCAT AGGGCCGTGTTAAAAGGAGCCAGATTTTCACAAGACCTCAT < 41bp 0.777581887424129 0.56657939042779 0.46025968 0.3103541 prediction 0.422004993992677 Functional Loss - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6063286 chr7:6063283 synonymous SNV . 0 24 hm5C_associated_SNPs_88992 0 1 0 2 6063280 6063297 mRNA hsa-miR-490-3p EIF2AK1 miRanda miRanda
7171 chr18 21739933 21739933 1 + G T BRCA 21739931 + 21739911 21739951 41 AGATGTAGCTAAAAAAAGTTCAGGATCTGGTGACAAATGTG AGATGTAGCTAAAAAAAGTTCATGATCTGGTGACAAATGTG < 41bp 0.792926216555699 0.581925095366125 0.15469864 0.041460335 prediction 0.422002242379148 Functional Loss - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739931 chr18:21739933 stopgain 1.000 0 23 hm5C_associated_SNPs_88993 0 0 0 1 21739923 21739944 mRNA hsa-miR-197 CABYR miRanda miRanda
7172 chr19 36259320 36259320 1 + G A ESCA 36259317 + 36259297 36259337 41 TTTCTCCAGGGAAGCGGATGCCCGATTATCGTTCCTGTTGG TTTCTCCAGGGAAGCGGATGCCCAATTATCGTTCCTGTTGG < 41bp 0.804649960812744 0.593650543598279 0.72372663 0.54542047 prediction 0.421998834428931 Functional Loss - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36259317 chr19:36259320 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_88995 0 0 1 1 36259316 36259334 mRNA hsa-miR-873 C19orf55 miRanda miRanda
7173 chr11 94328535 94328535 1 + G A STAD 94328532 + 94328512 94328552 41 GAAGGCTGTGGCTGAAAAGACACGTCTCAGTCCTTCAGGCC GAAGGCTGTGGCTGAAAAGACACATCTCAGTCCTTCAGGCC < 41bp 0.710843312305692 0.451961358342534 0.32566702 0.16204348 prediction 0.421686624611385 Functional Loss - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94328532 chr11:94328535 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_89134 0 0 0 1 94328513 94328536 mRNA hsa-miR-187 PIWIL4 miRanda miRanda
7174 chr1 28176633 28176633 1 + G T rs35775135 28176631 + 28176611 28176651 41 GTGTGGAGGGCCCTGGCTCCCTGGGCCTGGAGGAATCAGGG GTGTGGAGGGCCCTGGCTCCCTTGGCCTGGAGGAATCAGGG < 41bp 0.911058539471325 0.700265001308362 0.35871935 0.09561315 prediction 0.421587076325926 Functional Loss - PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28176631 chr1:28176633 synonymous SNV . 0 23 hm5C_associated_SNPs_89170 0 0 1 1 28176630 28176652 mRNA hsa-miR-339-5p PPP1R8 miRanda miRanda
7175 chr22 46725290 46725290 1 + G T CESC 46725287 + 46725267 46725307 41 GATATCAAACTGGAACCACTCGCGGTCACTCCAGATGCTGC GATATCAAACTGGAACCACTCGCTGTCACTCCAGATGCTGC < 41bp 0.710711174305611 0.316363404650424 0.41042286 0.019043803 prediction 0.421422348611222 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46725287 chr22:46725290 synonymous SNV . 0 24 hm5C_associated_SNPs_89225 0 0 1 2 46725285 46725308 mRNA hsa-miR-103 GTSE1 miRanda miRanda
7176 chr22 46725290 46725290 1 + G T CESC 46725287 + 46725267 46725307 41 GATATCAAACTGGAACCACTCGCGGTCACTCCAGATGCTGC GATATCAAACTGGAACCACTCGCTGTCACTCCAGATGCTGC < 41bp 0.710711174305611 0.316363404650424 0.41042286 0.019043803 prediction 0.421422348611222 Functional Loss - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46725287 chr22:46725290 synonymous SNV . 0 24 hm5C_associated_SNPs_89225 0 0 1 2 46725285 46725308 mRNA hsa-miR-107 GTSE1 miRanda miRanda
7177 chr5 169127118 169127118 1 + G T LUAD 169127116 + 169127096 169127136 41 CCACCGTGGTGGCCAGGAAGCTGGGATTCCCAGAGATCATC CCACCGTGGTGGCCAGGAAGCTTGGATTCCCAGAGATCATC < 41bp 0.710652523116634 0.389202364827478 0.7667419 0.13829675 prediction 0.421305046233268 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127116 chr5:169127118 synonymous SNV . 0 23 hm5C_associated_SNPs_89280 0 0 1 2 169127106 169127131 mRNA hsa-miR-330-5p DOCK2 miRanda miRanda
7178 chr5 169127118 169127118 1 + G T LUAD 169127116 + 169127096 169127136 41 CCACCGTGGTGGCCAGGAAGCTGGGATTCCCAGAGATCATC CCACCGTGGTGGCCAGGAAGCTTGGATTCCCAGAGATCATC < 41bp 0.710652523116634 0.389202364827478 0.7667419 0.13829675 prediction 0.421305046233268 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127116 chr5:169127118 synonymous SNV . 0 23 hm5C_associated_SNPs_89280 0 0 1 2 169127109 169127131 mRNA hsa-miR-326 DOCK2 miRanda miRanda
7179 chr1 26524887 26524887 1 + G A UCEC 26524884 + 26524864 26524904 41 ATCTGCATCACCCAGGACGGCTGGGTGGACATCTACAGTGA ATCTGCATCACCCAGGACGGCTGAGTGGACATCTACAGTGA < 41bp 0.809492084499593 0.598856300552239 0.18660903 0.055432916 prediction 0.421271567894708 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524884 chr1:26524887 stopgain 0.998 1 24 hm5C_associated_SNPs_89290 0 0 0 1 26524887 26524908 mRNA hsa-miR-224 CATSPER4 miRanda miRanda
7180 chr7 48965739 48965739 1 + G T PAAD 48965736 + 48965716 48965756 41 ACCAGAACTGAAGGAAGACTCTAGGAACTGAAAACTGCAAC ACCAGAACTGAAGGAAGACTCTATGAACTGAAAACTGCAAC < 41bp 0.710614525441782 0.392894638645135 0.43112144 0.12646708 prediction 0.421229050883564 Functional Loss - CDC14C ENSG00000218305 downstream Human processed_pseudogene chr7:48965736 chr7:48965739 . . 0 24 hm5C_associated_SNPs_89311 0 0 0 1 48965722 48965743 mRNA hsa-miR-384 CDC14C miRanda miRanda
7181 chr8 125957418 125957418 1 + A C rs73706165 125957417 + 125957397 125957437 41 GACACTGGTTGAGAAATACCCAGGAACACTCTGATTGAGAA GACACTGGTTGAGAAATACCCCGGAACACTCTGATTGAGAA < 41bp 0.817921456688993 0.607403013066531 0.91682947 0.37891927 prediction 0.421036887244925 Functional Loss - LINC00964 ENSG00000249816 ncRNA_exonic Human lincRNA chr8:125957417 chr8:125957418 . . 0 22 hm5C_associated_SNPs_89400 0 0 0 1 125957412 125957435 mRNA hsa-miR-421 LOC157381 miRanda miRanda
7182 chr19 50215191 50215191 1 + C T HNSC 50215189 + 50215169 50215209 41 TGTACATCGTGTCCCGATTCCTCCACCTGCAGTCGCCCTTC TGTACATCGTGTCCCGATTCCTTCACCTGCAGTCGCCCTTC < 41bp 0.814610439720271 0.604113855784223 0.93212706 0.123545945 prediction 0.420993167872097 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50215189 chr19:50215191 synonymous SNV . 0 23 hm5C_associated_SNPs_89411 0 0 0 1 50215173 50215195 mRNA hsa-miR-491-5p CPT1C miRanda miRanda
7183 chr1 207870916 207870916 1 + G A rs201832831 207870913 + 207870893 207870933 41 GGGACAAGGACAACTTTTCACCCGGGCAGGAAGTGTTCTAC GGGACAAGGACAACTTTTCACCCAGGCAGGAAGTGTTCTAC < 41bp 0.807863287652768 0.59737018843375 0.1797756 0.08417866 prediction 0.420986198438036 Functional Loss - CR1L ENSG00000197721 CDS Human protein_coding chr1:207870913 chr1:207870916 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_89413 0 0 0 3 207870911 207870934 mRNA hsa-miR-30a CR1L miRanda miRanda
7184 chr1 207870916 207870916 1 + G A rs201832831 207870913 + 207870893 207870933 41 GGGACAAGGACAACTTTTCACCCGGGCAGGAAGTGTTCTAC GGGACAAGGACAACTTTTCACCCAGGCAGGAAGTGTTCTAC < 41bp 0.807863287652768 0.59737018843375 0.1797756 0.08417866 prediction 0.420986198438036 Functional Loss - CR1L ENSG00000197721 CDS Human protein_coding chr1:207870913 chr1:207870916 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_89413 0 0 0 3 207870911 207870934 mRNA hsa-miR-30d CR1L miRanda miRanda
7185 chr1 207870916 207870916 1 + G A rs201832831 207870913 + 207870893 207870933 41 GGGACAAGGACAACTTTTCACCCGGGCAGGAAGTGTTCTAC GGGACAAGGACAACTTTTCACCCAGGCAGGAAGTGTTCTAC < 41bp 0.807863287652768 0.59737018843375 0.1797756 0.08417866 prediction 0.420986198438036 Functional Loss - CR1L ENSG00000197721 CDS Human protein_coding chr1:207870913 chr1:207870916 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_89413 0 0 0 3 207870911 207870934 mRNA hsa-miR-30e CR1L miRanda miRanda
7186 chr9 72755185 72755185 1 + A T UCEC 72755181 + 72755161 72755201 41 AAAACCAAACATGTATCGGGCTGGAGACCACACTACAGGCT AAAACCAAACATGTATCGGGCTGGTGACCACACTACAGGCT < 41bp 0.710490665589298 0.37040916387925 0.32928157 0.24591294 prediction 0.420981331178596 Functional Loss - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72755181 chr9:72755185 synonymous SNV . 0 25 hm5C_associated_SNPs_89417 0 0 0 1 72755172 72755197 mRNA hsa-miR-142-3p MAMDC2 miRanda miRanda
7187 chr5 43173495 43173495 1 + C T UCEC 43173492 + 43173472 43173512 41 CACTCTGAAATGTCACCTCACTGCATGCCAAACTGGAGTAG CACTCTGAAATGTCACCTCACTGTATGCCAAACTGGAGTAG < 41bp 0.710471749071211 0.484313492119444 0.10212615 0.09128159 prediction 0.420943498142421 Functional Loss - ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43173492 chr5:43173495 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_89432 0 0 1 2 43173487 43173509 mRNA hsa-miR-145 ZNF131 miRanda miRanda
7188 chr5 43173495 43173495 1 + C T UCEC 43173492 + 43173472 43173512 41 CACTCTGAAATGTCACCTCACTGCATGCCAAACTGGAGTAG CACTCTGAAATGTCACCTCACTGTATGCCAAACTGGAGTAG < 41bp 0.710471749071211 0.484313492119444 0.10212615 0.09128159 prediction 0.420943498142421 Functional Loss - ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43173492 chr5:43173495 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_89432 0 0 1 2 43173485 43173510 mRNA hsa-miR-136 ZNF131 miRanda miRanda
7189 chr12 56480402 56480402 1 + G C LUAD 56480401 + 56480381 56480421 41 GGAGGGACATCGTGAGGGACCGAGATGCTGAGATAGTGGTG GGAGGGACATCGTGAGGGACCCAGATGCTGAGATAGTGGTG < 41bp 0.71047087301193 0.407120632605468 0.53297615 0.3789166 prediction 0.42094174602386 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56480401 chr12:56480402 nonsynonymous SNV 0.311 1 22 hm5C_associated_SNPs_89433 0 0 1 1 56480402 56480423 mRNA hsa-miR-197 ERBB3 miRanda miRanda
7190 chr12 56480404 56480404 1 + G A SKCM 56480401 + 56480381 56480421 41 GGAGGGACATCGTGAGGGACCGAGATGCTGAGATAGTGGTG GGAGGGACATCGTGAGGGACCGAAATGCTGAGATAGTGGTG < 41bp 0.71047087301193 0.47060299383413 0.53297615 0.19617155 prediction 0.42094174602386 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56480401 chr12:56480404 nonsynonymous SNV 0.232 1 24 hm5C_associated_SNPs_89434 0 0 1 1 56480402 56480423 mRNA hsa-miR-197 ERBB3 miRanda miRanda
7191 chr12 9985995 9985995 1 + G T LUSC 9985992 + 9985972 9986012 41 TCTAAAAGTGAATAATGGCACAAGAAGAAATATAAGTAATA TCTAAAAGTGAATAATGGCACAATAAGAAATATAAGTAATA < 41bp 0.710446181979654 0.345562744136241 0.078213125 0.051047176 prediction 0.420892363959308 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9985992 chr12:9985995 nonsynonymous SNV 0.734 2 24 hm5C_associated_SNPs_89454 0 0 0 1 9985975 9985995 mRNA hsa-miR-455-5p KLRF1 miRanda miRanda
7192 chr1 48699341 48699341 1 + G T LUAD 48699337 + 48699317 48699357 41 TCTTCCACAGACGAGGTGGGCTGCGTGGACCCTGATGTCTG TCTTCCACAGACGAGGTGGGCTGCTTGGACCCTGATGTCTG < 41bp 0.716575218935772 0.506130052874776 0.4062654 0.367323 prediction 0.420890332121992 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48699337 chr1:48699341 nonsynonymous SNV 0.818 5 25 hm5C_associated_SNPs_89456 0 0 1 1 48699338 48699362 mRNA hsa-miR-182 SLC5A9 miRanda miRanda
7193 chr19 46376480 46376480 1 + C T rs57358251 46376478 + 46376458 46376498 41 CAGTGGGCATGGTGTTGATCCACGGGGTACTGTGATAACCA CAGTGGGCATGGTGTTGATCCATGGGGTACTGTGATAACCA < 41bp 0.783945009111811 0.573508591654803 0.62153983 0.3779065 prediction 0.420872834914015 Functional Loss - FOXA3 ENSG00000170608 UTR3 Human protein_coding chr19:46376478 chr19:46376480 . . 0 23 hm5C_associated_SNPs_89465 0 0 0 3 46376473 46376493 mRNA hsa-miR-27a FOXA3 miRanda miRanda
7194 chr19 46376480 46376480 1 + C T rs57358251 46376478 + 46376458 46376498 41 CAGTGGGCATGGTGTTGATCCACGGGGTACTGTGATAACCA CAGTGGGCATGGTGTTGATCCATGGGGTACTGTGATAACCA < 41bp 0.783945009111811 0.573508591654803 0.62153983 0.3779065 prediction 0.420872834914015 Functional Loss - FOXA3 ENSG00000170608 UTR3 Human protein_coding chr19:46376478 chr19:46376480 . . 0 23 hm5C_associated_SNPs_89465 0 0 0 3 46376467 46376491 mRNA hsa-miR-101 FOXA3 miRanda miRanda
7195 chr19 46376480 46376480 1 + C T rs57358251 46376478 + 46376458 46376498 41 CAGTGGGCATGGTGTTGATCCACGGGGTACTGTGATAACCA CAGTGGGCATGGTGTTGATCCATGGGGTACTGTGATAACCA < 41bp 0.783945009111811 0.573508591654803 0.62153983 0.3779065 prediction 0.420872834914015 Functional Loss - FOXA3 ENSG00000170608 UTR3 Human protein_coding chr19:46376478 chr19:46376480 . . 0 23 hm5C_associated_SNPs_89465 0 0 0 3 46376473 46376493 mRNA hsa-miR-27b FOXA3 miRanda miRanda
7196 chr4 81207634 81207634 1 + G A SKCM 81207631 + 81207611 81207651 41 GCCAAACGAGGGTGCAGCCCCCGGGTTAAACCCCAGCATAT GCCAAACGAGGGTGCAGCCCCCGAGTTAAACCCCAGCATAT < 41bp 0.795535670193103 0.585099566731987 0.91082394 0.47632542 prediction 0.420872206922232 Functional Loss - FGF5 ENSG00000138675 CDS Human protein_coding chr4:81207631 chr4:81207634 synonymous SNV . 0 24 hm5C_associated_SNPs_89466 0 0 0 1 81207629 81207650 mRNA hsa-miR-299-3p FGF5 miRanda miRanda
7197 chr16 89287559 89287559 1 + C T UCEC 89287557 + 89287537 89287577 41 TGGCAGCCCCTGACCTGGCCCACGGTAAGTCCTGGTGGGGC TGGCAGCCCCTGACCTGGCCCATGGTAAGTCCTGGTGGGGC < 41bp 0.710354356117245 0.459172549043858 0.31536692 0.39730844 prediction 0.420708712234489 Functional Loss - ZNF778 ENSG00000170100 CDS Human protein_coding chr16:89287557 chr16:89287559 synonymous SNV . 0 23 hm5C_associated_SNPs_89547 0 0 1 1 89287552 89287560 mRNA hsa-miR-494 ZNF778 miRanda miRanda
7198 chr10 709268 709268 1 + G A rs190242191 709265 + 709245 709285 41 CTTCGTAATGGCTTTTGAGGCTCGGGAACAGGGACAGTAGC CTTCGTAATGGCTTTTGAGGCTCAGGAACAGGGACAGTAGC < 41bp 0.710341328910514 0.487321378870708 0.16452491 0.1462011 prediction 0.420682657821028 Functional Loss - PRR26 ENSG00000180525 UTR3 Human protein_coding chr10:709265 chr10:709268 . . 0 24 hm5C_associated_SNPs_89562 0 0 0 1 709249 709270 mRNA hsa-miR-615-3p C10orf108 miRanda miRanda
7199 chr3 32750266 32750266 1 + A C COAD 32750262 + 32750242 32750282 41 TTATCATCTGCGGCAGTATACAGAAGCCATATCAGTTGGTG TTATCATCTGCGGCAGTATACAGACGCCATATCAGTTGGTG < 41bp 0.710282217856547 0.30977568010891 0.24165502 0.2461249 prediction 0.420564435713095 Functional Loss - CNOT10 ENSG00000182973 CDS Human protein_coding chr3:32750262 chr3:32750266 nonsynonymous SNV 0.987 2 25 hm5C_associated_SNPs_89622 0 0 1 2 32750249 32750272 mRNA hsa-miR-135a CNOT10 miRanda miRanda
7200 chr3 32750266 32750266 1 + A C COAD 32750262 + 32750242 32750282 41 TTATCATCTGCGGCAGTATACAGAAGCCATATCAGTTGGTG TTATCATCTGCGGCAGTATACAGACGCCATATCAGTTGGTG < 41bp 0.710282217856547 0.30977568010891 0.24165502 0.2461249 prediction 0.420564435713095 Functional Loss - CNOT10 ENSG00000182973 CDS Human protein_coding chr3:32750262 chr3:32750266 nonsynonymous SNV 0.987 2 25 hm5C_associated_SNPs_89622 0 0 1 2 32750250 32750272 mRNA hsa-miR-135b CNOT10 miRanda miRanda
7201 chr1 15545933 15545933 1 + G A LUSC 15545930 + 15545910 15545950 41 GCAAGGGGAGAGGAGCAGAACCCGAGGTTGAGCATCTCTCT GCAAGGGGAGAGGAGCAGAACCCAAGGTTGAGCATCTCTCT < 41bp 0.710276743917896 0.471473484629649 0.8921184 0.44368306 prediction 0.420553487835791 Functional Loss - TMEM51 ENSG00000171729 CDS Human protein_coding chr1:15545930 chr1:15545933 synonymous SNV . 0 24 hm5C_associated_SNPs_89626 0 0 1 1 15545932 15545953 mRNA hsa-miR-185 TMEM51 miRanda miRanda
7202 chr11 109295829 109295829 1 + G A rs144849462 109295826 + 109295806 109295846 41 GGATCTGGGAGCTGTCCAGCCAGGTCTGGTGCTGAAGTCGC GGATCTGGGAGCTGTCCAGCCAGATCTGGTGCTGAAGTCGC < 41bp 0.710275503093051 0.458852496468026 0.8428842 0.8686881 prediction 0.420551006186102 Functional Loss - C11orf87 ENSG00000255028 ncRNA_intronic Human antisense chr11:109295826 chr11:109295829 . . 0 24 hm5C_associated_SNPs_89628 0 0 0 3 109295816 109295839 mRNA hsa-miR-29a C11orf87 miRanda miRanda
7203 chr11 109295829 109295829 1 + G A rs144849462 109295826 + 109295806 109295846 41 GGATCTGGGAGCTGTCCAGCCAGGTCTGGTGCTGAAGTCGC GGATCTGGGAGCTGTCCAGCCAGATCTGGTGCTGAAGTCGC < 41bp 0.710275503093051 0.458852496468026 0.8428842 0.8686881 prediction 0.420551006186102 Functional Loss - C11orf87 ENSG00000255028 ncRNA_intronic Human antisense chr11:109295826 chr11:109295829 . . 0 24 hm5C_associated_SNPs_89628 0 0 0 3 109295817 109295839 mRNA hsa-miR-29b C11orf87 miRanda miRanda
7204 chr11 109295829 109295829 1 + G A rs144849462 109295826 + 109295806 109295846 41 GGATCTGGGAGCTGTCCAGCCAGGTCTGGTGCTGAAGTCGC GGATCTGGGAGCTGTCCAGCCAGATCTGGTGCTGAAGTCGC < 41bp 0.710275503093051 0.458852496468026 0.8428842 0.8686881 prediction 0.420551006186102 Functional Loss - C11orf87 ENSG00000255028 ncRNA_intronic Human antisense chr11:109295826 chr11:109295829 . . 0 24 hm5C_associated_SNPs_89628 0 0 0 3 109295818 109295839 mRNA hsa-miR-29c C11orf87 miRanda miRanda
7205 chr2 220368858 220368858 1 + C T UCEC 220368855 + 220368835 220368875 41 TTTATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTC TTTATCAGTGACATCATCAACTGTGGCATCTACCTCTTTTC < 41bp 0.740312634487831 0.530051591955279 0.42398697 0.29109877 prediction 0.420522085065104 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368855 chr2:220368858 synonymous SNV . 0 24 hm5C_associated_SNPs_89636 0 0 1 9 220368851 220368871 mRNA hsa-let-7a GMPPA miRanda miRanda
7206 chr2 220368858 220368858 1 + C T UCEC 220368855 + 220368835 220368875 41 TTTATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTC TTTATCAGTGACATCATCAACTGTGGCATCTACCTCTTTTC < 41bp 0.740312634487831 0.530051591955279 0.42398697 0.29109877 prediction 0.420522085065104 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368855 chr2:220368858 synonymous SNV . 0 24 hm5C_associated_SNPs_89636 0 0 1 9 220368850 220368871 mRNA hsa-let-7b GMPPA miRanda miRanda
7207 chr2 220368858 220368858 1 + C T UCEC 220368855 + 220368835 220368875 41 TTTATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTC TTTATCAGTGACATCATCAACTGTGGCATCTACCTCTTTTC < 41bp 0.740312634487831 0.530051591955279 0.42398697 0.29109877 prediction 0.420522085065104 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368855 chr2:220368858 synonymous SNV . 0 24 hm5C_associated_SNPs_89636 0 0 1 9 220368851 220368871 mRNA hsa-let-7c GMPPA miRanda miRanda
7208 chr2 220368858 220368858 1 + C T UCEC 220368855 + 220368835 220368875 41 TTTATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTC TTTATCAGTGACATCATCAACTGTGGCATCTACCTCTTTTC < 41bp 0.740312634487831 0.530051591955279 0.42398697 0.29109877 prediction 0.420522085065104 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368855 chr2:220368858 synonymous SNV . 0 24 hm5C_associated_SNPs_89636 0 0 1 9 220368851 220368871 mRNA hsa-let-7d GMPPA miRanda miRanda
7209 chr2 220368858 220368858 1 + C T UCEC 220368855 + 220368835 220368875 41 TTTATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTC TTTATCAGTGACATCATCAACTGTGGCATCTACCTCTTTTC < 41bp 0.740312634487831 0.530051591955279 0.42398697 0.29109877 prediction 0.420522085065104 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368855 chr2:220368858 synonymous SNV . 0 24 hm5C_associated_SNPs_89636 0 0 1 9 220368851 220368871 mRNA hsa-let-7e GMPPA miRanda miRanda
7210 chr2 220368858 220368858 1 + C T UCEC 220368855 + 220368835 220368875 41 TTTATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTC TTTATCAGTGACATCATCAACTGTGGCATCTACCTCTTTTC < 41bp 0.740312634487831 0.530051591955279 0.42398697 0.29109877 prediction 0.420522085065104 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368855 chr2:220368858 synonymous SNV . 0 24 hm5C_associated_SNPs_89636 0 0 1 9 220368851 220368871 mRNA hsa-let-7f GMPPA miRanda miRanda
7211 chr2 220368858 220368858 1 + C T UCEC 220368855 + 220368835 220368875 41 TTTATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTC TTTATCAGTGACATCATCAACTGTGGCATCTACCTCTTTTC < 41bp 0.740312634487831 0.530051591955279 0.42398697 0.29109877 prediction 0.420522085065104 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368855 chr2:220368858 synonymous SNV . 0 24 hm5C_associated_SNPs_89636 0 0 1 9 220368850 220368871 mRNA hsa-miR-98 GMPPA miRanda miRanda
7212 chr2 220368858 220368858 1 + C T UCEC 220368855 + 220368835 220368875 41 TTTATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTC TTTATCAGTGACATCATCAACTGTGGCATCTACCTCTTTTC < 41bp 0.740312634487831 0.530051591955279 0.42398697 0.29109877 prediction 0.420522085065104 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368855 chr2:220368858 synonymous SNV . 0 24 hm5C_associated_SNPs_89636 0 0 1 9 220368851 220368871 mRNA hsa-let-7g GMPPA miRanda miRanda
7213 chr2 220368858 220368858 1 + C T UCEC 220368855 + 220368835 220368875 41 TTTATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTC TTTATCAGTGACATCATCAACTGTGGCATCTACCTCTTTTC < 41bp 0.740312634487831 0.530051591955279 0.42398697 0.29109877 prediction 0.420522085065104 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368855 chr2:220368858 synonymous SNV . 0 24 hm5C_associated_SNPs_89636 0 0 1 9 220368844 220368871 mRNA hsa-let-7i GMPPA miRanda miRanda
7214 chrX 13778239 13778239 1 + G A CESC 13778236 + 13778216 13778256 41 GCTTTTTGTACCCTGCAGCCCTAGAGAATGAAGTGTACTGC GCTTTTTGTACCCTGCAGCCCTAAAGAATGAAGTGTACTGC < 41bp 0.783687893702601 0.573434341354289 0.16585827 0.15646213 prediction 0.420507104696624 Functional Loss - OFD1 ENSG00000046651 CDS Human protein_coding chrX:13778236 chrX:13778239 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_89637 0 0 1 2 13778234 13778252 mRNA hsa-miR-181b OFD1 miRanda miRanda
7215 chrX 13778239 13778239 1 + G A CESC 13778236 + 13778216 13778256 41 GCTTTTTGTACCCTGCAGCCCTAGAGAATGAAGTGTACTGC GCTTTTTGTACCCTGCAGCCCTAAAGAATGAAGTGTACTGC < 41bp 0.783687893702601 0.573434341354289 0.16585827 0.15646213 prediction 0.420507104696624 Functional Loss - OFD1 ENSG00000046651 CDS Human protein_coding chrX:13778236 chrX:13778239 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_89637 0 0 1 2 13778234 13778252 mRNA hsa-miR-181d OFD1 miRanda miRanda
7216 chr11 124502084 124502084 1 + C T ESCA 124502081 + 124502061 124502101 41 AACCCTTGGTAGATACTCACCTGCAGCACTTGAAGTCTCCA AACCCTTGGTAGATACTCACCTGTAGCACTTGAAGTCTCCA < 41bp 0.710240016063961 0.489360496370239 0.12531844 0.11802846 prediction 0.420480032127923 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502081 chr11:124502084 stopgain 0.970 1 24 hm5C_associated_SNPs_89646 0 0 1 12 124502071 124502092 mRNA hsa-miR-302a TBRG1 miRanda miRanda
7217 chr11 124502084 124502084 1 + C T ESCA 124502081 + 124502061 124502101 41 AACCCTTGGTAGATACTCACCTGCAGCACTTGAAGTCTCCA AACCCTTGGTAGATACTCACCTGTAGCACTTGAAGTCTCCA < 41bp 0.710240016063961 0.489360496370239 0.12531844 0.11802846 prediction 0.420480032127923 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502081 chr11:124502084 stopgain 0.970 1 24 hm5C_associated_SNPs_89646 0 0 1 12 124502071 124502092 mRNA hsa-miR-302b TBRG1 miRanda miRanda
7218 chr11 124502084 124502084 1 + C T ESCA 124502081 + 124502061 124502101 41 AACCCTTGGTAGATACTCACCTGCAGCACTTGAAGTCTCCA AACCCTTGGTAGATACTCACCTGTAGCACTTGAAGTCTCCA < 41bp 0.710240016063961 0.489360496370239 0.12531844 0.11802846 prediction 0.420480032127923 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502081 chr11:124502084 stopgain 0.970 1 24 hm5C_associated_SNPs_89646 0 0 1 12 124502071 124502092 mRNA hsa-miR-302c TBRG1 miRanda miRanda
7219 chr11 124502084 124502084 1 + C T ESCA 124502081 + 124502061 124502101 41 AACCCTTGGTAGATACTCACCTGCAGCACTTGAAGTCTCCA AACCCTTGGTAGATACTCACCTGTAGCACTTGAAGTCTCCA < 41bp 0.710240016063961 0.489360496370239 0.12531844 0.11802846 prediction 0.420480032127923 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502081 chr11:124502084 stopgain 0.970 1 24 hm5C_associated_SNPs_89646 0 0 1 12 124502073 124502092 mRNA hsa-miR-302d TBRG1 miRanda miRanda
7220 chr11 124502084 124502084 1 + C T ESCA 124502081 + 124502061 124502101 41 AACCCTTGGTAGATACTCACCTGCAGCACTTGAAGTCTCCA AACCCTTGGTAGATACTCACCTGTAGCACTTGAAGTCTCCA < 41bp 0.710240016063961 0.489360496370239 0.12531844 0.11802846 prediction 0.420480032127923 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502081 chr11:124502084 stopgain 0.970 1 24 hm5C_associated_SNPs_89646 0 0 1 12 124502073 124502092 mRNA hsa-miR-372 TBRG1 miRanda miRanda
7221 chr11 124502084 124502084 1 + C T ESCA 124502081 + 124502061 124502101 41 AACCCTTGGTAGATACTCACCTGCAGCACTTGAAGTCTCCA AACCCTTGGTAGATACTCACCTGTAGCACTTGAAGTCTCCA < 41bp 0.710240016063961 0.489360496370239 0.12531844 0.11802846 prediction 0.420480032127923 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502081 chr11:124502084 stopgain 0.970 1 24 hm5C_associated_SNPs_89646 0 0 1 12 124502070 124502092 mRNA hsa-miR-373 TBRG1 miRanda miRanda
7222 chr11 124502084 124502084 1 + C T ESCA 124502081 + 124502061 124502101 41 AACCCTTGGTAGATACTCACCTGCAGCACTTGAAGTCTCCA AACCCTTGGTAGATACTCACCTGTAGCACTTGAAGTCTCCA < 41bp 0.710240016063961 0.489360496370239 0.12531844 0.11802846 prediction 0.420480032127923 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502081 chr11:124502084 stopgain 0.970 1 24 hm5C_associated_SNPs_89646 0 0 1 12 124502072 124502092 mRNA hsa-miR-520e TBRG1 miRanda miRanda
7223 chr11 124502084 124502084 1 + C T ESCA 124502081 + 124502061 124502101 41 AACCCTTGGTAGATACTCACCTGCAGCACTTGAAGTCTCCA AACCCTTGGTAGATACTCACCTGTAGCACTTGAAGTCTCCA < 41bp 0.710240016063961 0.489360496370239 0.12531844 0.11802846 prediction 0.420480032127923 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502081 chr11:124502084 stopgain 0.970 1 24 hm5C_associated_SNPs_89646 0 0 1 12 124502071 124502092 mRNA hsa-miR-520a-3p TBRG1 miRanda miRanda
7224 chr11 124502084 124502084 1 + C T ESCA 124502081 + 124502061 124502101 41 AACCCTTGGTAGATACTCACCTGCAGCACTTGAAGTCTCCA AACCCTTGGTAGATACTCACCTGTAGCACTTGAAGTCTCCA < 41bp 0.710240016063961 0.489360496370239 0.12531844 0.11802846 prediction 0.420480032127923 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502081 chr11:124502084 stopgain 0.970 1 24 hm5C_associated_SNPs_89646 0 0 1 12 124502072 124502092 mRNA hsa-miR-520b TBRG1 miRanda miRanda
7225 chr11 124502084 124502084 1 + C T ESCA 124502081 + 124502061 124502101 41 AACCCTTGGTAGATACTCACCTGCAGCACTTGAAGTCTCCA AACCCTTGGTAGATACTCACCTGTAGCACTTGAAGTCTCCA < 41bp 0.710240016063961 0.489360496370239 0.12531844 0.11802846 prediction 0.420480032127923 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502081 chr11:124502084 stopgain 0.970 1 24 hm5C_associated_SNPs_89646 0 0 1 12 124502071 124502092 mRNA hsa-miR-520c-3p TBRG1 miRanda miRanda
7226 chr11 124502084 124502084 1 + C T ESCA 124502081 + 124502061 124502101 41 AACCCTTGGTAGATACTCACCTGCAGCACTTGAAGTCTCCA AACCCTTGGTAGATACTCACCTGTAGCACTTGAAGTCTCCA < 41bp 0.710240016063961 0.489360496370239 0.12531844 0.11802846 prediction 0.420480032127923 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502081 chr11:124502084 stopgain 0.970 1 24 hm5C_associated_SNPs_89646 0 0 1 12 124502071 124502092 mRNA hsa-miR-520d-3p TBRG1 miRanda miRanda
7227 chr11 124502084 124502084 1 + C T ESCA 124502081 + 124502061 124502101 41 AACCCTTGGTAGATACTCACCTGCAGCACTTGAAGTCTCCA AACCCTTGGTAGATACTCACCTGTAGCACTTGAAGTCTCCA < 41bp 0.710240016063961 0.489360496370239 0.12531844 0.11802846 prediction 0.420480032127923 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502081 chr11:124502084 stopgain 0.970 1 24 hm5C_associated_SNPs_89646 0 0 1 12 124502076 124502092 mRNA hsa-miR-302e TBRG1 miRanda miRanda
7228 chr10 99517436 99517436 1 + G T LIHC 99517433 + 99517413 99517453 41 TTGTGGAAACAGCTTCTGCTCTCGATGCTGCTCCTTCAAGG TTGTGGAAACAGCTTCTGCTCTCTATGCTGCTCCTTCAAGG < 41bp 0.928874599817924 0.718647245234313 0.4255093 0.8303214 prediction 0.420454709167222 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99517433 chr10:99517436 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_89661 0 0 0 6 99517424 99517445 mRNA hsa-miR-15a ZFYVE27 miRanda miRanda
7229 chr10 99517436 99517436 1 + G T LIHC 99517433 + 99517413 99517453 41 TTGTGGAAACAGCTTCTGCTCTCGATGCTGCTCCTTCAAGG TTGTGGAAACAGCTTCTGCTCTCTATGCTGCTCCTTCAAGG < 41bp 0.928874599817924 0.718647245234313 0.4255093 0.8303214 prediction 0.420454709167222 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99517433 chr10:99517436 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_89661 0 0 0 6 99517423 99517445 mRNA hsa-miR-16 ZFYVE27 miRanda miRanda
7230 chr10 99517436 99517436 1 + G T LIHC 99517433 + 99517413 99517453 41 TTGTGGAAACAGCTTCTGCTCTCGATGCTGCTCCTTCAAGG TTGTGGAAACAGCTTCTGCTCTCTATGCTGCTCCTTCAAGG < 41bp 0.928874599817924 0.718647245234313 0.4255093 0.8303214 prediction 0.420454709167222 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99517433 chr10:99517436 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_89661 0 0 0 6 99517424 99517445 mRNA hsa-miR-15b ZFYVE27 miRanda miRanda
7231 chr10 99517436 99517436 1 + G T LIHC 99517433 + 99517413 99517453 41 TTGTGGAAACAGCTTCTGCTCTCGATGCTGCTCCTTCAAGG TTGTGGAAACAGCTTCTGCTCTCTATGCTGCTCCTTCAAGG < 41bp 0.928874599817924 0.718647245234313 0.4255093 0.8303214 prediction 0.420454709167222 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99517433 chr10:99517436 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_89661 0 0 0 6 99517425 99517445 mRNA hsa-miR-195 ZFYVE27 miRanda miRanda
7232 chr10 99517436 99517436 1 + G T LIHC 99517433 + 99517413 99517453 41 TTGTGGAAACAGCTTCTGCTCTCGATGCTGCTCCTTCAAGG TTGTGGAAACAGCTTCTGCTCTCTATGCTGCTCCTTCAAGG < 41bp 0.928874599817924 0.718647245234313 0.4255093 0.8303214 prediction 0.420454709167222 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99517433 chr10:99517436 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_89661 0 0 0 6 99517424 99517445 mRNA hsa-miR-424 ZFYVE27 miRanda miRanda
7233 chr10 99517436 99517436 1 + G T LIHC 99517433 + 99517413 99517453 41 TTGTGGAAACAGCTTCTGCTCTCGATGCTGCTCCTTCAAGG TTGTGGAAACAGCTTCTGCTCTCTATGCTGCTCCTTCAAGG < 41bp 0.928874599817924 0.718647245234313 0.4255093 0.8303214 prediction 0.420454709167222 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99517433 chr10:99517436 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_89661 0 0 0 6 99517425 99517445 mRNA hsa-miR-497 ZFYVE27 miRanda miRanda
7234 chrX 118377753 118377753 1 + G T rs774728252 118377751 + 118377731 118377771 41 AATCTCAAAACAGAGCTCAGCTGCAAAAAAGCATATTTTCT AATCTCAAAACAGAGCTCAGCTTCAAAAAAGCATATTTTCT < 41bp 0.710210637622424 0.405347070975229 0.1413652 0.05288285 prediction 0.420421275244848 Functional Loss - PGRMC1 ENSG00000101856 UTR3 Human protein_coding chrX:118377751 chrX:118377753 . . 0 23 hm5C_associated_SNPs_89680 0 0 1 1 118377741 118377760 mRNA hsa-miR-129-5p PGRMC1 miRanda miRanda
7235 chr1 178517311 178517311 1 + A C rs144670566 178517310 + 178517290 178517330 41 CTGGGCTATAGACTGGGCACCAGGGACTATCACCTCGTGCC CTGGGCTATAGACTGGGCACCCGGGACTATCACCTCGTGCC < 41bp 0.836386009171167 0.626182640236209 0.87600607 0.6149375 prediction 0.420406737869916 Functional Loss - C1orf220 ENSG00000184909;ENSG00000213057 UTR3 Human other chr1:178517310 chr1:178517311 . . 0 22 hm5C_associated_SNPs_89687 0 0 0 1 178517306 178517326 mRNA hsa-miR-202 C1orf220 miRanda miRanda
7236 chr21 37748210 37748210 1 + C T rs80088522 37748208 + 37748188 37748228 41 GTTGTGCTGAGATTGCCAATCACGGTTAAACACAAAGTGTT GTTGTGCTGAGATTGCCAATCATGGTTAAACACAAAGTGTT < 41bp 0.710200176540998 0.472085891671856 0.3627903 0.4880206 prediction 0.420400353081997 Functional Loss - MORC3 ENSG00000159256 UTR3 Human protein_coding chr21:37748208 chr21:37748210 . . 0 23 hm5C_associated_SNPs_89694 0 0 1 1 37748204 37748225 mRNA hsa-miR-9 MORC3 miRanda miRanda
7237 chr3 158541305 158541305 1 + C T UCEC 158541302 + 158541282 158541322 41 TCCTGAACATCAGCTGGGAACTGCATATGGCTTGTAAGTAT TCCTGAACATCAGCTGGGAACTGTATATGGCTTGTAAGTAT < 41bp 0.769329441327145 0.559147795376622 0.103915215 0.05270955 prediction 0.420363291901046 Functional Loss - MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158541302 chr3:158541305 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_89708 0 0 0 1 158541301 158541314 mRNA hsa-miR-217 MFSD1 miRanda miRanda
7238 chr11 75439830 75439830 1 + T C rs576873666 75439829 + 75439809 75439849 41 GCCCTCTTTCCTCTATTTGTCTCCAGGGCACCCCTGGTGCC GCCCTCTTTCCTCTATTTGTCCCCAGGGCACCCCTGGTGCC < 41bp 0.768618773588378 0.558449187977291 0.93809927 0.07197294 prediction 0.420339171222172 Functional Loss - MOGAT2 ENSG00000166391 UTR3 Human protein_coding chr11:75439829 chr11:75439830 . . 0 22 hm5C_associated_SNPs_89717 0 0 0 1 75439830 75439852 mRNA hsa-miR-96 MOGAT2 miRanda miRanda
7239 chr11 65734003 65734003 1 + C T COAD 65734000 + 65733980 65734020 41 ACAGTGGGGCCCCGGCTGGCCTCCGAATACCTCACGCCTGA ACAGTGGGGCCCCGGCTGGCCTCTGAATACCTCACGCCTGA < 41bp 0.730787436940846 0.520635358038771 0.32477066 0.094982445 prediction 0.42030415780415 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65734000 chr11:65734003 synonymous SNV . 0 24 hm5C_associated_SNPs_89733 0 0 1 2 65733994 65734013 mRNA hsa-miR-202 SART1 miRanda miRanda
7240 chr11 65734003 65734003 1 + C T COAD 65734000 + 65733980 65734020 41 ACAGTGGGGCCCCGGCTGGCCTCCGAATACCTCACGCCTGA ACAGTGGGGCCCCGGCTGGCCTCTGAATACCTCACGCCTGA < 41bp 0.730787436940846 0.520635358038771 0.32477066 0.094982445 prediction 0.42030415780415 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65734000 chr11:65734003 synonymous SNV . 0 24 hm5C_associated_SNPs_89733 0 0 1 2 65733991 65734013 mRNA hsa-miR-496 SART1 miRanda miRanda
7241 chr12 8906506 8906506 1 + C T COAD 8906504 + 8906484 8906524 41 AGGTAAAGCTGTTTTCTTGGCTCGAGATAAGCACCATTTGG AGGTAAAGCTGTTTTCTTGGCTTGAGATAAGCACCATTTGG < 41bp 0.710098189310195 0.418692845909349 0.27980238 0.21472076 prediction 0.42019637862039 Functional Loss - RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8906504 chr12:8906506 stopgain 1.000 0 23 hm5C_associated_SNPs_89764 0 0 0 1 8906498 8906519 mRNA hsa-miR-218 RIMKLB miRanda miRanda
7242 chr19 580458 580458 1 + C T BLCA 580455 + 580435 580475 41 TGGGCACGGCCAACATCCAGCTCCACGGTGAGTCCTGCAGC TGGGCACGGCCAACATCCAGCTCTACGGTGAGTCCTGCAGC < 41bp 0.713260650068453 0.503175394150446 0.6309438 0.6360297 prediction 0.420170511836014 Functional Loss - BSG ENSG00000172270 CDS Human protein_coding chr19:580455 chr19:580458 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_89779 0 0 1 2 580450 580461 mRNA hsa-miR-330-5p BSG miRanda miRanda
7243 chr19 580458 580458 1 + C T BLCA 580455 + 580435 580475 41 TGGGCACGGCCAACATCCAGCTCCACGGTGAGTCCTGCAGC TGGGCACGGCCAACATCCAGCTCTACGGTGAGTCCTGCAGC < 41bp 0.713260650068453 0.503175394150446 0.6309438 0.6360297 prediction 0.420170511836014 Functional Loss - BSG ENSG00000172270 CDS Human protein_coding chr19:580455 chr19:580458 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_89779 0 0 1 2 580455 580461 mRNA hsa-miR-326 BSG miRanda miRanda
7244 chr15 49575840 49575840 1 + C T SKCM 49575837 + 49575817 49575857 41 GGAGCAGTGTTTGTGATTGCCAACAGTTGTGTGGAGATGAA GGAGCAGTGTTTGTGATTGCCAATAGTTGTGTGGAGATGAA < 41bp 0.755687722218818 0.545643315944229 0.21737072 0.24669024 prediction 0.420088812549178 Functional Loss - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49575837 chr15:49575840 synonymous SNV . 0 24 hm5C_associated_SNPs_89800 0 0 1 1 49575816 49575840 mRNA hsa-miR-182 GALK2 miRanda miRanda
7245 chr5 162868318 162868318 1 + G A UCEC 162868315 + 162868295 162868335 41 AACTGTATTATTCACTCCTTCAAGAGAACTTGCCACTTGAA AACTGTATTATTCACTCCTTCAAAAGAACTTGCCACTTGAA < 41bp 0.768690825434497 0.558655197953722 0.38044006 0.2132155 prediction 0.420071254961549 Functional Loss - CCNG1 ENSG00000113328 CDS Human protein_coding chr5:162868315 chr5:162868318 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_89806 0 0 1 1 162868309 162868332 mRNA hsa-miR-454 CCNG1 miRanda miRanda
7246 chr11 65651026 65651026 1 + G T UCEC 65651023 + 65651003 65651043 41 AGCAATACCTGTGGCATCACCAAGTTCCCGCTCACTGCCCG AGCAATACCTGTGGCATCACCAATTTCCCGCTCACTGCCCG < 41bp 0.709947709094785 0.301503145422831 0.4025563 0.062311977 prediction 0.41989541818957 Functional Loss - CTSW ENSG00000172543 CDS Human protein_coding chr11:65651023 chr11:65651026 nonsynonymous SNV 0.376 2 24 hm5C_associated_SNPs_89879 0 0 0 4 65651018 65651042 mRNA hsa-miR-34a CTSW miRanda miRanda
7247 chr11 65651026 65651026 1 + G T UCEC 65651023 + 65651003 65651043 41 AGCAATACCTGTGGCATCACCAAGTTCCCGCTCACTGCCCG AGCAATACCTGTGGCATCACCAATTTCCCGCTCACTGCCCG < 41bp 0.709947709094785 0.301503145422831 0.4025563 0.062311977 prediction 0.41989541818957 Functional Loss - CTSW ENSG00000172543 CDS Human protein_coding chr11:65651023 chr11:65651026 nonsynonymous SNV 0.376 2 24 hm5C_associated_SNPs_89879 0 0 0 4 65651015 65651042 mRNA hsa-miR-34c-5p CTSW miRanda miRanda
7248 chr11 65651026 65651026 1 + G T UCEC 65651023 + 65651003 65651043 41 AGCAATACCTGTGGCATCACCAAGTTCCCGCTCACTGCCCG AGCAATACCTGTGGCATCACCAATTTCCCGCTCACTGCCCG < 41bp 0.709947709094785 0.301503145422831 0.4025563 0.062311977 prediction 0.41989541818957 Functional Loss - CTSW ENSG00000172543 CDS Human protein_coding chr11:65651023 chr11:65651026 nonsynonymous SNV 0.376 2 24 hm5C_associated_SNPs_89879 0 0 0 4 65651022 65651042 mRNA hsa-miR-449a CTSW miRanda miRanda
7249 chr11 65651026 65651026 1 + G T UCEC 65651023 + 65651003 65651043 41 AGCAATACCTGTGGCATCACCAAGTTCCCGCTCACTGCCCG AGCAATACCTGTGGCATCACCAATTTCCCGCTCACTGCCCG < 41bp 0.709947709094785 0.301503145422831 0.4025563 0.062311977 prediction 0.41989541818957 Functional Loss - CTSW ENSG00000172543 CDS Human protein_coding chr11:65651023 chr11:65651026 nonsynonymous SNV 0.376 2 24 hm5C_associated_SNPs_89879 0 0 0 4 65651022 65651042 mRNA hsa-miR-449b CTSW miRanda miRanda
7250 chr3 112710045 112710045 1 + C T HNSC 112710042 + 112710022 112710062 41 CCCCCTACGGGAGGCAAGACCTTCACCTGCGTATCTTTGAC CCCCCTACGGGAGGCAAGACCTTTACCTGCGTATCTTTGAC < 41bp 0.746746980134216 0.536799872904446 0.37659675 0.26128483 prediction 0.41989421445954 Functional Loss - GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112710042 chr3:112710045 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_89880 0 0 1 1 112710030 112710051 mRNA hsa-miR-125a-3p GTPBP8 miRanda miRanda
7251 chr20 29625956 29625956 1 + G A ACC 29625953 + 29625933 29625973 41 GCATTCAGATGCAATTGGACCAAGAGAACAATGGGAACCAG GCATTCAGATGCAATTGGACCAAAAGAACAATGGGAACCAG < 41bp 0.734255192055723 0.524345151734149 0.8876325 0.63726187 prediction 0.419820080643148 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29625953 chr20:29625956 nonsynonymous SNV 0.988 1 24 hm5C_associated_SNPs_89908 0 0 0 2 29625935 29625956 mRNA hsa-miR-133a FRG1B miRanda miRanda
7252 chr20 29625956 29625956 1 + G A ACC 29625953 + 29625933 29625973 41 GCATTCAGATGCAATTGGACCAAGAGAACAATGGGAACCAG GCATTCAGATGCAATTGGACCAAAAGAACAATGGGAACCAG < 41bp 0.734255192055723 0.524345151734149 0.8876325 0.63726187 prediction 0.419820080643148 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29625953 chr20:29625956 nonsynonymous SNV 0.988 1 24 hm5C_associated_SNPs_89908 0 0 0 2 29625935 29625956 mRNA hsa-miR-133b FRG1B miRanda miRanda
7253 chr12 96661014 96661014 1 + G A rs2302901 96661011 + 96660991 96661031 41 TGATGAAACAAATTTGTCCCCACGGGCTAGTTTACCTGTGT TGATGAAACAAATTTGTCCCCACAGGCTAGTTTACCTGTGT < 41bp 0.71176402429538 0.501855669499435 0.4917457 0.32783166 prediction 0.41981670959189 Functional Loss - ELK3 ENSG00000111145 UTR3 Human protein_coding chr12:96661011 chr12:96661014 . . 0 24 hm5C_associated_SNPs_89911 0 0 1 1 96660993 96661014 mRNA hsa-miR-491-5p ELK3 miRanda miRanda
7254 chr2 162696385 162696385 1 + G A SKCM 162696382 + 162696362 162696402 41 CTCATGACCTTTTCACAGAACTGGATGAGATTTGTTGGCGT CTCATGACCTTTTCACAGAACTGAATGAGATTTGTTGGCGT < 41bp 0.76733065186755 0.557479637934745 0.40110928 0.14491424 prediction 0.419702027865609 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162696382 chr2:162696385 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89970 0 0 0 2 162696374 162696394 mRNA hsa-miR-216a SLC4A10 miRanda miRanda
7255 chr2 162696385 162696385 1 + G A SKCM 162696382 + 162696362 162696402 41 CTCATGACCTTTTCACAGAACTGGATGAGATTTGTTGGCGT CTCATGACCTTTTCACAGAACTGAATGAGATTTGTTGGCGT < 41bp 0.76733065186755 0.557479637934745 0.40110928 0.14491424 prediction 0.419702027865609 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162696382 chr2:162696385 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_89970 0 0 0 2 162696365 162696387 mRNA hsa-miR-145 SLC4A10 miRanda miRanda
7256 chr5 113831793 113831793 1 + A C LUSC 113831789 + 113831769 113831809 41 ATGGAGAGCTACGACAAGCACGTCACTTACAATGCTGAGCG ATGGAGAGCTACGACAAGCACGTCCCTTACAATGCTGAGCG < 41bp 0.709807373242673 0.296982252320741 0.1876379 0.20503047 prediction 0.419614746485345 Functional Loss - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113831789 chr5:113831793 nonsynonymous SNV 0.419 1 25 hm5C_associated_SNPs_90011 0 0 0 2 113831786 113831807 mRNA hsa-miR-23a KCNN2 miRanda miRanda
7257 chr5 113831793 113831793 1 + A C LUSC 113831789 + 113831769 113831809 41 ATGGAGAGCTACGACAAGCACGTCACTTACAATGCTGAGCG ATGGAGAGCTACGACAAGCACGTCCCTTACAATGCTGAGCG < 41bp 0.709807373242673 0.296982252320741 0.1876379 0.20503047 prediction 0.419614746485345 Functional Loss - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113831789 chr5:113831793 nonsynonymous SNV 0.419 1 25 hm5C_associated_SNPs_90011 0 0 0 2 113831786 113831807 mRNA hsa-miR-23b KCNN2 miRanda miRanda
7258 chr8 22974456 22974456 1 + G T UCEC 22974454 + 22974434 22974474 41 GCTGAAGAGACAATGATCACCAGCCCGGGGACTCCTGCCTC GCTGAAGAGACAATGATCACCATCCCGGGGACTCCTGCCTC < 41bp 0.709802250990266 0.384606829211748 0.05953315 0.05538264 prediction 0.419604501980531 Functional Loss - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22974454 chr8:22974456 nonsynonymous SNV 0.006 2 23 hm5C_associated_SNPs_90018 0 0 0 1 22974435 22974458 mRNA hsa-miR-138 TNFRSF10C miRanda miRanda
7259 chr10 38666967 38666967 1 + G A SKCM 38666964 + 38666944 38666984 41 TTTATCAAAAGTTACTGGAACTGGAAAAGCACATTAGGGTC TTTATCAAAAGTTACTGGAACTGAAAAAGCACATTAGGGTC < 41bp 0.759752828728155 0.550003329651341 0.32052612 0.18904221 prediction 0.419498998153629 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38666964 chr10:38666967 . . 0 24 hm5C_associated_SNPs_90073 0 0 0 4 38666958 38666977 mRNA hsa-miR-218 HSD17B7P2 miRanda miRanda
7260 chr10 38666967 38666967 1 + G A SKCM 38666964 + 38666944 38666984 41 TTTATCAAAAGTTACTGGAACTGGAAAAGCACATTAGGGTC TTTATCAAAAGTTACTGGAACTGAAAAAGCACATTAGGGTC < 41bp 0.759752828728155 0.550003329651341 0.32052612 0.18904221 prediction 0.419498998153629 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38666964 chr10:38666967 . . 0 24 hm5C_associated_SNPs_90073 0 0 0 4 38666955 38666978 mRNA hsa-miR-135a HSD17B7P2 miRanda miRanda
7261 chr10 38666967 38666967 1 + G A SKCM 38666964 + 38666944 38666984 41 TTTATCAAAAGTTACTGGAACTGGAAAAGCACATTAGGGTC TTTATCAAAAGTTACTGGAACTGAAAAAGCACATTAGGGTC < 41bp 0.759752828728155 0.550003329651341 0.32052612 0.18904221 prediction 0.419498998153629 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38666964 chr10:38666967 . . 0 24 hm5C_associated_SNPs_90073 0 0 0 4 38666950 38666969 mRNA hsa-miR-145 HSD17B7P2 miRanda miRanda
7262 chr10 38666967 38666967 1 + G A SKCM 38666964 + 38666944 38666984 41 TTTATCAAAAGTTACTGGAACTGGAAAAGCACATTAGGGTC TTTATCAAAAGTTACTGGAACTGAAAAAGCACATTAGGGTC < 41bp 0.759752828728155 0.550003329651341 0.32052612 0.18904221 prediction 0.419498998153629 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38666964 chr10:38666967 . . 0 24 hm5C_associated_SNPs_90073 0 0 0 4 38666955 38666978 mRNA hsa-miR-135b HSD17B7P2 miRanda miRanda
7263 chr11 12264317 12264317 1 + C T UCEC 12264315 + 12264295 12264335 41 GTTTGGACACGGGGATTTCCCGCAGGTAAACATGGGGCTTT GTTTGGACACGGGGATTTCCCGTAGGTAAACATGGGGCTTT < 41bp 0.709692389826788 0.466007086590975 0.93248165 0.9199592 prediction 0.419384779653577 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12264315 chr11:12264317 stopgain 0.994 0 23 hm5C_associated_SNPs_90125 0 0 0 4 12264312 12264319 mRNA hsa-let-7b MICAL2 miRanda miRanda
7264 chr11 12264317 12264317 1 + C T UCEC 12264315 + 12264295 12264335 41 GTTTGGACACGGGGATTTCCCGCAGGTAAACATGGGGCTTT GTTTGGACACGGGGATTTCCCGTAGGTAAACATGGGGCTTT < 41bp 0.709692389826788 0.466007086590975 0.93248165 0.9199592 prediction 0.419384779653577 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12264315 chr11:12264317 stopgain 0.994 0 23 hm5C_associated_SNPs_90125 0 0 0 4 12264312 12264319 mRNA hsa-let-7c MICAL2 miRanda miRanda
7265 chr11 12264317 12264317 1 + C T UCEC 12264315 + 12264295 12264335 41 GTTTGGACACGGGGATTTCCCGCAGGTAAACATGGGGCTTT GTTTGGACACGGGGATTTCCCGTAGGTAAACATGGGGCTTT < 41bp 0.709692389826788 0.466007086590975 0.93248165 0.9199592 prediction 0.419384779653577 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12264315 chr11:12264317 stopgain 0.994 0 23 hm5C_associated_SNPs_90125 0 0 0 4 12264312 12264319 mRNA hsa-let-7f MICAL2 miRanda miRanda
7266 chr11 12264317 12264317 1 + C T UCEC 12264315 + 12264295 12264335 41 GTTTGGACACGGGGATTTCCCGCAGGTAAACATGGGGCTTT GTTTGGACACGGGGATTTCCCGTAGGTAAACATGGGGCTTT < 41bp 0.709692389826788 0.466007086590975 0.93248165 0.9199592 prediction 0.419384779653577 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12264315 chr11:12264317 stopgain 0.994 0 23 hm5C_associated_SNPs_90125 0 0 0 4 12264312 12264319 mRNA hsa-let-7i MICAL2 miRanda miRanda
7267 chr16 89178534 89178534 1 + G T LUSC 89178531 + 89178511 89178551 41 GTTCTTAAGTTCTGAAACGCCGCGGATCAATGTCTTTATGG GTTCTTAAGTTCTGAAACGCCGCTGATCAATGTCTTTATGG < 41bp 0.709614478758474 0.323657120991842 0.1943042 0.25056618 prediction 0.419228957516949 Functional Loss - ACSF3 ENSG00000176715 CDS Human protein_coding chr16:89178531 chr16:89178534 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_90195 0 0 1 1 89178532 89178556 mRNA hsa-miR-217 ACSF3 miRanda miRanda
7268 chr16 89178533 89178533 1 + C T UCEC 89178531 + 89178511 89178551 41 GTTCTTAAGTTCTGAAACGCCGCGGATCAATGTCTTTATGG GTTCTTAAGTTCTGAAACGCCGTGGATCAATGTCTTTATGG < 41bp 0.709614478758474 0.450298820154562 0.1943042 0.19699562 prediction 0.419228957516949 Functional Loss - ACSF3 ENSG00000176715 CDS Human protein_coding chr16:89178531 chr16:89178533 nonsynonymous SNV 0.007 2 23 hm5C_associated_SNPs_90196 0 0 1 1 89178532 89178556 mRNA hsa-miR-217 ACSF3 miRanda miRanda
7269 chr8 48353063 48353063 1 + C T BLCA 48353061 + 48353041 48353081 41 CCAAGGAGACTGCAGGCTACCTCAGGGGCCGTCCCCAGGAC CCAAGGAGACTGCAGGCTACCTTAGGGGCCGTCCCCAGGAC < 41bp 0.814788609318967 0.605243075800322 0.20509142 0.05579886 prediction 0.419091067037289 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48353061 chr8:48353063 synonymous SNV . 0 23 hm5C_associated_SNPs_90257 0 0 1 11 48353043 48353064 mRNA hsa-let-7a KIAA0146 miRanda miRanda
7270 chr8 48353063 48353063 1 + C T BLCA 48353061 + 48353041 48353081 41 CCAAGGAGACTGCAGGCTACCTCAGGGGCCGTCCCCAGGAC CCAAGGAGACTGCAGGCTACCTTAGGGGCCGTCCCCAGGAC < 41bp 0.814788609318967 0.605243075800322 0.20509142 0.05579886 prediction 0.419091067037289 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48353061 chr8:48353063 synonymous SNV . 0 23 hm5C_associated_SNPs_90257 0 0 1 11 48353043 48353064 mRNA hsa-let-7b KIAA0146 miRanda miRanda
7271 chr8 48353063 48353063 1 + C T BLCA 48353061 + 48353041 48353081 41 CCAAGGAGACTGCAGGCTACCTCAGGGGCCGTCCCCAGGAC CCAAGGAGACTGCAGGCTACCTTAGGGGCCGTCCCCAGGAC < 41bp 0.814788609318967 0.605243075800322 0.20509142 0.05579886 prediction 0.419091067037289 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48353061 chr8:48353063 synonymous SNV . 0 23 hm5C_associated_SNPs_90257 0 0 1 11 48353043 48353064 mRNA hsa-let-7c KIAA0146 miRanda miRanda
7272 chr8 48353063 48353063 1 + C T BLCA 48353061 + 48353041 48353081 41 CCAAGGAGACTGCAGGCTACCTCAGGGGCCGTCCCCAGGAC CCAAGGAGACTGCAGGCTACCTTAGGGGCCGTCCCCAGGAC < 41bp 0.814788609318967 0.605243075800322 0.20509142 0.05579886 prediction 0.419091067037289 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48353061 chr8:48353063 synonymous SNV . 0 23 hm5C_associated_SNPs_90257 0 0 1 11 48353046 48353064 mRNA hsa-let-7d KIAA0146 miRanda miRanda
7273 chr8 48353063 48353063 1 + C T BLCA 48353061 + 48353041 48353081 41 CCAAGGAGACTGCAGGCTACCTCAGGGGCCGTCCCCAGGAC CCAAGGAGACTGCAGGCTACCTTAGGGGCCGTCCCCAGGAC < 41bp 0.814788609318967 0.605243075800322 0.20509142 0.05579886 prediction 0.419091067037289 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48353061 chr8:48353063 synonymous SNV . 0 23 hm5C_associated_SNPs_90257 0 0 1 11 48353043 48353064 mRNA hsa-let-7e KIAA0146 miRanda miRanda
7274 chr8 48353063 48353063 1 + C T BLCA 48353061 + 48353041 48353081 41 CCAAGGAGACTGCAGGCTACCTCAGGGGCCGTCCCCAGGAC CCAAGGAGACTGCAGGCTACCTTAGGGGCCGTCCCCAGGAC < 41bp 0.814788609318967 0.605243075800322 0.20509142 0.05579886 prediction 0.419091067037289 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48353061 chr8:48353063 synonymous SNV . 0 23 hm5C_associated_SNPs_90257 0 0 1 11 48353043 48353064 mRNA hsa-let-7f KIAA0146 miRanda miRanda
7275 chr8 48353063 48353063 1 + C T BLCA 48353061 + 48353041 48353081 41 CCAAGGAGACTGCAGGCTACCTCAGGGGCCGTCCCCAGGAC CCAAGGAGACTGCAGGCTACCTTAGGGGCCGTCCCCAGGAC < 41bp 0.814788609318967 0.605243075800322 0.20509142 0.05579886 prediction 0.419091067037289 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48353061 chr8:48353063 synonymous SNV . 0 23 hm5C_associated_SNPs_90257 0 0 1 11 48353043 48353064 mRNA hsa-miR-98 KIAA0146 miRanda miRanda
7276 chr8 48353063 48353063 1 + C T BLCA 48353061 + 48353041 48353081 41 CCAAGGAGACTGCAGGCTACCTCAGGGGCCGTCCCCAGGAC CCAAGGAGACTGCAGGCTACCTTAGGGGCCGTCCCCAGGAC < 41bp 0.814788609318967 0.605243075800322 0.20509142 0.05579886 prediction 0.419091067037289 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48353061 chr8:48353063 synonymous SNV . 0 23 hm5C_associated_SNPs_90257 0 0 1 11 48353043 48353064 mRNA hsa-let-7g KIAA0146 miRanda miRanda
7277 chr8 48353063 48353063 1 + C T BLCA 48353061 + 48353041 48353081 41 CCAAGGAGACTGCAGGCTACCTCAGGGGCCGTCCCCAGGAC CCAAGGAGACTGCAGGCTACCTTAGGGGCCGTCCCCAGGAC < 41bp 0.814788609318967 0.605243075800322 0.20509142 0.05579886 prediction 0.419091067037289 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48353061 chr8:48353063 synonymous SNV . 0 23 hm5C_associated_SNPs_90257 0 0 1 11 48353037 48353064 mRNA hsa-let-7i KIAA0146 miRanda miRanda
7278 chr8 48353063 48353063 1 + C T BLCA 48353061 + 48353041 48353081 41 CCAAGGAGACTGCAGGCTACCTCAGGGGCCGTCCCCAGGAC CCAAGGAGACTGCAGGCTACCTTAGGGGCCGTCCCCAGGAC < 41bp 0.814788609318967 0.605243075800322 0.20509142 0.05579886 prediction 0.419091067037289 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48353061 chr8:48353063 synonymous SNV . 0 23 hm5C_associated_SNPs_90257 0 0 1 11 48353050 48353068 mRNA hsa-miR-125b KIAA0146 miRanda miRanda
7279 chr8 48353063 48353063 1 + C T BLCA 48353061 + 48353041 48353081 41 CCAAGGAGACTGCAGGCTACCTCAGGGGCCGTCCCCAGGAC CCAAGGAGACTGCAGGCTACCTTAGGGGCCGTCCCCAGGAC < 41bp 0.814788609318967 0.605243075800322 0.20509142 0.05579886 prediction 0.419091067037289 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48353061 chr8:48353063 synonymous SNV . 0 23 hm5C_associated_SNPs_90257 0 0 1 11 48353043 48353068 mRNA hsa-miR-125a-5p KIAA0146 miRanda miRanda
7280 chr14 57876211 57876211 1 + C T UCEC 57876208 + 57876188 57876228 41 ATTTAAATGGAGTTGATGCACTGCGACTTAAACTGTGGCTG ATTTAAATGGAGTTGATGCACTGTGACTTAAACTGTGGCTG < 41bp 0.730664420187585 0.521129098292048 0.135647 0.2042869 prediction 0.419070643791075 Functional Loss - NAA30 ENSG00000139977 CDS Human protein_coding chr14:57876208 chr14:57876211 stopgain 1.000 1 24 hm5C_associated_SNPs_90267 0 0 1 3 57876189 57876211 mRNA hsa-miR-148a NAA30 miRanda miRanda
7281 chr14 57876211 57876211 1 + C T UCEC 57876208 + 57876188 57876228 41 ATTTAAATGGAGTTGATGCACTGCGACTTAAACTGTGGCTG ATTTAAATGGAGTTGATGCACTGTGACTTAAACTGTGGCTG < 41bp 0.730664420187585 0.521129098292048 0.135647 0.2042869 prediction 0.419070643791075 Functional Loss - NAA30 ENSG00000139977 CDS Human protein_coding chr14:57876208 chr14:57876211 stopgain 1.000 1 24 hm5C_associated_SNPs_90267 0 0 1 3 57876190 57876211 mRNA hsa-miR-152 NAA30 miRanda miRanda
7282 chr14 57876211 57876211 1 + C T UCEC 57876208 + 57876188 57876228 41 ATTTAAATGGAGTTGATGCACTGCGACTTAAACTGTGGCTG ATTTAAATGGAGTTGATGCACTGTGACTTAAACTGTGGCTG < 41bp 0.730664420187585 0.521129098292048 0.135647 0.2042869 prediction 0.419070643791075 Functional Loss - NAA30 ENSG00000139977 CDS Human protein_coding chr14:57876208 chr14:57876211 stopgain 1.000 1 24 hm5C_associated_SNPs_90267 0 0 1 3 57876190 57876211 mRNA hsa-miR-148b NAA30 miRanda miRanda
7283 chr8 72755870 72755870 1 + G T LUAD 72755866 + 72755846 72755886 41 TGCTCTCCCGAATCCTTGCGCGCCGCGCCCCTACCAGGTTC TGCTCTCCCGAATCCTTGCGCGCCTCGCCCCTACCAGGTTC < 41bp 0.73227217529929 0.522786678487575 0.12685794 0.09769416 prediction 0.41897099362343 Functional Loss - MSC-AS1 ENSG00000235531 CDS Human antisense chr8:72755866 chr8:72755870 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_90303 0 0 0 1 72755864 72755886 mRNA hsa-miR-490-3p LOC100132891 miRanda miRanda
7284 chr10 124189173 124189173 1 + G A COAD 124189170 + 124189150 124189190 41 CCGGTCCTTCAGAATCCAAACACGCTTTCCGTCCTACCAAC CCGGTCCTTCAGAATCCAAACACACTTTCCGTCCTACCAAC < 41bp 0.709458733564456 0.463028538488388 0.07120937 0.095541686 prediction 0.418917467128912 Functional Loss - PLEKHA1 ENSG00000107679 CDS Human protein_coding chr10:124189170 chr10:124189173 nonsynonymous SNV 0.035 0 24 hm5C_associated_SNPs_90319 0 0 1 1 124189162 124189184 mRNA hsa-miR-184 PLEKHA1 miRanda miRanda
7285 chr14 73685880 73685880 1 + G T UCEC 73685877 + 73685857 73685897 41 TTATTACTCCTTGCCATTTTCAAGAAAGCATTGCCAGCTCT TTATTACTCCTTGCCATTTTCAATAAAGCATTGCCAGCTCT < 41bp 0.709430319027958 0.333090558026291 0.41099912 0.011938274 prediction 0.418860638055915 Functional Loss - PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73685877 chr14:73685880 nonsynonymous SNV 0.985 5 24 hm5C_associated_SNPs_90342 0 0 0 1 73685876 73685901 mRNA hsa-miR-7 PSEN1 miRanda miRanda
7286 chr5 76130339 76130339 1 + C T rs145017560 76130337 + 76130317 76130357 41 AGTTAACCAGGTGTGTGGTGCACGTTTGTAATCCCAGTTAC AGTTAACCAGGTGTGTGGTGCATGTTTGTAATCCCAGTTAC < 41bp 0.739677975460044 0.530282111519618 0.083658546 0.1256229 prediction 0.418791727880853 Functional Loss - F2RL1 ENSG00000164251 UTR3 Human protein_coding chr5:76130337 chr5:76130339 . . 0 23 hm5C_associated_SNPs_90373 0 0 1 1 76130337 76130360 mRNA hsa-miR-146b-5p F2RL1 miRanda miRanda
7287 chr15 43477479 43477479 1 + G A rs538639103 43477476 + 43477456 43477496 41 GGGGCGGGAGGAGGCGGGGCCAGGCCTGGTCTCTGATAACG GGGGCGGGAGGAGGCGGGGCCAGACCTGGTCTCTGATAACG < 41bp 0.809254144384802 0.599893307974785 0.89442915 0.8959086 prediction 0.418721672820034 Functional Loss - CCNDBP1 ENSG00000166946 UTR5 Human protein_coding chr15:43477476 chr15:43477479 . . 0 24 hm5C_associated_SNPs_90409 0 0 0 1 43477475 43477494 mRNA hsa-miR-361-5p CCNDBP1 miRanda miRanda
7288 chr10 115663332 115663332 1 + G A BLCA 115663329 + 115663309 115663349 41 AAAAAACTGTACAACATTAGCAGGAACTGGAGACACAAATA AAAAAACTGTACAACATTAGCAGAAACTGGAGACACAAATA < 41bp 0.726460084060391 0.517100933085284 0.6433002 0.39409277 prediction 0.418718301950215 Functional Loss - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115663329 chr10:115663332 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90410 0 0 1 3 115663318 115663340 mRNA hsa-miR-145 NHLRC2 miRanda miRanda
7289 chr10 115663332 115663332 1 + G A BLCA 115663329 + 115663309 115663349 41 AAAAAACTGTACAACATTAGCAGGAACTGGAGACACAAATA AAAAAACTGTACAACATTAGCAGAAACTGGAGACACAAATA < 41bp 0.726460084060391 0.517100933085284 0.6433002 0.39409277 prediction 0.418718301950215 Functional Loss - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115663329 chr10:115663332 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90410 0 0 1 3 115663312 115663333 mRNA hsa-miR-370 NHLRC2 miRanda miRanda
7290 chr10 115663332 115663332 1 + G A BLCA 115663329 + 115663309 115663349 41 AAAAAACTGTACAACATTAGCAGGAACTGGAGACACAAATA AAAAAACTGTACAACATTAGCAGAAACTGGAGACACAAATA < 41bp 0.726460084060391 0.517100933085284 0.6433002 0.39409277 prediction 0.418718301950215 Functional Loss - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115663329 chr10:115663332 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90410 0 0 1 3 115663325 115663347 mRNA hsa-miR-599 NHLRC2 miRanda miRanda
7291 chrX 109764229 109764229 1 + G A UCEC 109764226 + 109764206 109764246 41 TGCTACGACCTTCTGGGGAACGCGAATTTCTCATTTTCTTC TGCTACGACCTTCTGGGGAACGCAAATTTCTCATTTTCTTC < 41bp 0.809064385819188 0.599712248546516 0.2225888 0.17588103 prediction 0.418704274545345 Functional Loss - TDGF1P3 ENSG00000225366 ncRNA_exonic Human transcribed_processed_pseudogene chrX:109764226 chrX:109764229 . . 0 24 hm5C_associated_SNPs_90417 0 0 0 1 109764217 109764238 mRNA hsa-miR-539 TDGF3 miRanda miRanda
7292 chr6 44122563 44122563 1 + G T SARC 44122560 + 44122540 44122580 41 CTGATGCCACCCGACGCCCTCACGGACACAGACTTCCAGTC CTGATGCCACCCGACGCCCTCACTGACACAGACTTCCAGTC < 41bp 0.709334994029583 0.314217721320231 0.23493257 0.06293079 prediction 0.418669988059165 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44122560 chr6:44122563 synonymous SNV . 0 24 hm5C_associated_SNPs_90434 0 0 1 1 44122551 44122575 mRNA hsa-miR-382 TMEM63B miRanda miRanda
7293 chr3 195453332 195453332 1 + G A BLCA 195453329 + 195453309 195453349 41 CGACTACAACCAACAGCAGCCGAGGGACGAACAGCACCTTA CGACTACAACCAACAGCAGCCGAAGGACGAACAGCACCTTA < 41bp 0.804781125367959 0.595448581268742 0.8214377 0.4245469 prediction 0.418665088198433 Functional Loss - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195453329 chr3:195453332 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_90435 0 0 0 2 195453327 195453349 mRNA hsa-miR-18a MUC20 miRanda miRanda
7294 chr3 195453332 195453332 1 + G A BLCA 195453329 + 195453309 195453349 41 CGACTACAACCAACAGCAGCCGAGGGACGAACAGCACCTTA CGACTACAACCAACAGCAGCCGAAGGACGAACAGCACCTTA < 41bp 0.804781125367959 0.595448581268742 0.8214377 0.4245469 prediction 0.418665088198433 Functional Loss - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195453329 chr3:195453332 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_90435 0 0 0 2 195453327 195453349 mRNA hsa-miR-18b MUC20 miRanda miRanda
7295 chr1 207891012 207891012 1 + C T rs146341419 207891010 + 207890990 207891030 41 GGTTTGGAGCAGCCCTGCCCCTCGCTGTGAACTTCCTGTTG GGTTTGGAGCAGCCCTGCCCCTTGCTGTGAACTTCCTGTTG < 41bp 0.709327962142728 0.441382304174553 0.20198715 0.08078995 prediction 0.418655924285455 Functional Loss - CR1L ENSG00000197721 CDS Human protein_coding chr1:207891010 chr1:207891012 nonsynonymous SNV 0.061 3 23 hm5C_associated_SNPs_90438 0 0 0 1 207891012 207891036 mRNA hsa-miR-29b CR1L miRanda miRanda
7296 chr12 104474575 104474575 1 + G A ESCA 104474572 + 104474552 104474592 41 TAAAGGGACAGTGCCACTTCCACGAAGCCTTCATACAGCCA TAAAGGGACAGTGCCACTTCCACAAAGCCTTCATACAGCCA < 41bp 0.709276898691101 0.480251092261593 0.20558521 0.07222906 prediction 0.418553797382201 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104474572 chr12:104474575 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_90477 0 0 0 1 104474575 104474598 mRNA hsa-miR-200a HCFC2 miRanda miRanda
7297 chr11 117038270 117038270 1 + C T SKCM 117038268 + 117038248 117038288 41 ACCGACGGGGGTTTTGTGCACTCGGACGGTGCCATCTCCTG ACCGACGGGGGTTTTGTGCACTTGGACGGTGCCATCTCCTG < 41bp 0.849356240094682 0.640121417648585 0.20543316 0.15864196 prediction 0.418469644892194 Functional Loss - PAFAH1B2 ENSG00000168092 CDS Human protein_coding chr11:117038268 chr11:117038270 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_90509 0 0 1 1 117038262 117038283 mRNA hsa-miR-183 PAFAH1B2 miRanda miRanda
7298 chrX 49173689 49173689 1 + G T THCA 49173687 + 49173667 49173707 41 GGAACAGGTTCACCCAAAGACTGGGTGTGAGTGTGGAGATG GGAACAGGTTCACCCAAAGACTTGGTGTGAGTGTGGAGATG < 41bp 0.911974207124371 0.702760450769063 0.058676004 0.01178962 prediction 0.418427512710617 Functional Loss - GAGE10 ENSG00000215274 CDS Human protein_coding chrX:49173687 chrX:49173689 nonsynonymous SNV 0.051 3 23 hm5C_associated_SNPs_90531 0 0 0 1 49173676 49173698 mRNA hsa-miR-342-3p GAGE10 miRanda miRanda
7299 chr12 58166590 58166590 1 + C T rs34913183 58166588 + 58166568 58166608 41 GGGCTCTTTGCAGACTCTTACTCGGAGAAGAGCCAGTTCTG GGGCTCTTTGCAGACTCTTACTTGGAGAAGAGCCAGTTCTG < 41bp 0.846202542488843 0.636990870265982 0.85748124 0.80314875 prediction 0.418423344445721 Functional Loss - EEF1AKMT3 ENSG00000123427 CDS Human protein_coding chr12:58166588 chr12:58166590 nonsynonymous SNV 0.721 0 23 hm5C_associated_SNPs_90533 0 0 0 1 58166585 58166604 mRNA hsa-miR-149 FAM119B miRanda miRanda
7300 chr12 8926041 8926041 1 + C T UCEC 8926038 + 8926018 8926058 41 ATGAAAGATGACGGCTCCTTCTGCGTCTGTGAGGCCAATGC ATGAAAGATGACGGCTCCTTCTGTGTCTGTGAGGCCAATGC < 41bp 0.770556015399096 0.56136121230203 0.13900268 0.09834498 prediction 0.418389606194132 Functional Loss - RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8926038 chr12:8926041 synonymous SNV . 0 24 hm5C_associated_SNPs_90549 0 0 1 2 8926040 8926060 mRNA hsa-miR-33a RIMKLB miRanda miRanda
7301 chr12 8926041 8926041 1 + C T UCEC 8926038 + 8926018 8926058 41 ATGAAAGATGACGGCTCCTTCTGCGTCTGTGAGGCCAATGC ATGAAAGATGACGGCTCCTTCTGTGTCTGTGAGGCCAATGC < 41bp 0.770556015399096 0.56136121230203 0.13900268 0.09834498 prediction 0.418389606194132 Functional Loss - RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8926038 chr12:8926041 synonymous SNV . 0 24 hm5C_associated_SNPs_90549 0 0 1 2 8926041 8926060 mRNA hsa-miR-33b RIMKLB miRanda miRanda
7302 chr10 102738704 102738704 1 - G A BLCA 102738707 - 102738687 102738727 41 AGTGAAGCTGCCAGAGCCCTCCTCAGTGGCACGCTCCGTGA AGTGAAGCTGCCAGAGCCCTCCTTAGTGGCACGCTCCGTGA < 41bp 0.75497959340478 0.545806977813942 0.10341784 0.051220566 prediction 0.418345231181677 Functional Loss - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102738707 chr10:102738704 nonsynonymous SNV 0.786 4 24 hm5C_associated_SNPs_90558 0 0 0 1 102738692 102738713 mRNA hsa-miR-22 MRPL43 miRanda miRanda
7303 chr6 150293079 150293079 1 + T C rs148079032 150293078 + 150293058 150293098 41 TGATCCTCTAGACTCAGCCTCTAGAATAGCTGGGACTACAG TGATCCTCTAGACTCAGCCTCCAGAATAGCTGGGACTACAG < 41bp 0.713696056572749 0.504532071804693 0.19079587 0.19870657 prediction 0.418327969536112 Functional Loss - ULBP1 ENSG00000111981 UTR3 Human protein_coding chr6:150293078 chr6:150293079 . . 0 22 hm5C_associated_SNPs_90569 0 0 0 1 150293057 150293079 mRNA hsa-miR-485-5p ULBP1 miRanda miRanda
7304 chr11 63057996 63057996 1 + G T HNSC 63057994 + 63057974 63058014 41 ACAGAACCCTGTGTGGATGGCTGGGTATATGATCAAAGCTA ACAGAACCCTGTGTGGATGGCTTGGTATATGATCAAAGCTA < 41bp 0.709135552700884 0.364775782396747 0.5148405 0.17873213 prediction 0.418271105401769 Functional Loss - SLC22A10 ENSG00000184999 CDS Human protein_coding chr11:63057994 chr11:63057996 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_90596 0 0 0 1 63057995 63058018 mRNA hsa-miR-373 SLC22A10 miRanda miRanda
7305 chr16 29124379 29124379 1 + G A SKCM 29124376 + 29124356 29124396 41 TGTCACTGATTTCAGTTGTTCTGGAGAATCATGTAGCGACA TGTCACTGATTTCAGTTGTTCTGAAGAATCATGTAGCGACA < 41bp 0.790960323183948 0.581845095157151 0.38029966 0.18565178 prediction 0.418230456053595 Functional Loss - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29124376 chr16:29124379 . . 0 24 hm5C_associated_SNPs_90615 0 0 0 2 29124371 29124393 mRNA hsa-miR-221 RRN3P2 miRanda miRanda
7306 chr16 29124379 29124379 1 + G A SKCM 29124376 + 29124356 29124396 41 TGTCACTGATTTCAGTTGTTCTGGAGAATCATGTAGCGACA TGTCACTGATTTCAGTTGTTCTGAAGAATCATGTAGCGACA < 41bp 0.790960323183948 0.581845095157151 0.38029966 0.18565178 prediction 0.418230456053595 Functional Loss - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29124376 chr16:29124379 . . 0 24 hm5C_associated_SNPs_90615 0 0 0 2 29124373 29124393 mRNA hsa-miR-222 RRN3P2 miRanda miRanda
7307 chr1 15890478 15890478 1 + G A BLCA 15890475 + 15890455 15890495 41 GAAGGGTGGTGTATAAAACCCTGGAAGACCCTTGGATTGGG GAAGGGTGGTGTATAAAACCCTGAAAGACCCTTGGATTGGG < 41bp 0.791304129609828 0.582202941058998 0.64048296 0.39589056 prediction 0.41820237710166 Functional Loss - DNAJC16 ENSG00000116138 CDS Human protein_coding chr1:15890475 chr1:15890478 nonsynonymous SNV 0.986 0 24 hm5C_associated_SNPs_90628 0 0 1 1 15890477 15890498 mRNA hsa-miR-150 DNAJC16 miRanda miRanda
7308 chr3 196449372 196449372 1 + G A rs377629523 196449369 + 196449349 196449389 41 AATTAAACAGGACATTCCTGCAGGACTTTATGTGGATCCGT AATTAAACAGGACATTCCTGCAGAACTTTATGTGGATCCGT < 41bp 0.779782722274699 0.570698841178659 0.6632359 0.27913707 prediction 0.418167762192081 Functional Loss - PIGX ENSG00000163964 CDS Human protein_coding chr3:196449369 chr3:196449372 nonsynonymous SNV 0.962 4 24 hm5C_associated_SNPs_90638 0 0 1 1 196449368 196449389 mRNA hsa-miR-127-3p PIGX miRanda miRanda
7309 chr11 66288755 66288755 1 + C T UCEC 66288752 + 66288732 66288772 41 TGTTTGCAGATGAGCCTTCCCAGCGTCCCCGTCTTCCTAGA TGTTTGCAGATGAGCCTTCCCAGTGTCCCCGTCTTCCTAGA < 41bp 0.724687311450887 0.515677515164392 0.7804343 0.3014322 prediction 0.418019592572989 Functional Loss - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66288752 chr11:66288755 synonymous SNV . 0 24 hm5C_associated_SNPs_90691 0 0 0 1 66288748 66288769 mRNA hsa-miR-7 BBS1 miRanda miRanda
7310 chr5 162869531 162869531 1 + G T UCEC 162869529 + 162869509 162869549 41 CAATTGAAGCATAGCTACTACAGAATAACTCACCTTCCAAC CAATTGAAGCATAGCTACTACATAATAACTCACCTTCCAAC < 41bp 0.708975706030612 0.380733217636675 0.4282947 0.13247648 prediction 0.417951412061224 Functional Loss - CCNG1 ENSG00000113328 CDS Human protein_coding chr5:162869529 chr5:162869531 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_90718 0 0 1 2 162869521 162869544 mRNA hsa-miR-196a CCNG1 miRanda miRanda
7311 chr5 162869531 162869531 1 + G T UCEC 162869529 + 162869509 162869549 41 CAATTGAAGCATAGCTACTACAGAATAACTCACCTTCCAAC CAATTGAAGCATAGCTACTACATAATAACTCACCTTCCAAC < 41bp 0.708975706030612 0.380733217636675 0.4282947 0.13247648 prediction 0.417951412061224 Functional Loss - CCNG1 ENSG00000113328 CDS Human protein_coding chr5:162869529 chr5:162869531 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_90718 0 0 1 2 162869521 162869544 mRNA hsa-miR-196b CCNG1 miRanda miRanda
7312 chr1 161140467 161140467 1 + C T CESC 161140465 + 161140445 161140485 41 GGCTAGTGGCTGTGTCTTATCTCAGGAGCTGTTTCAACAGC GGCTAGTGGCTGTGTCTTATCTTAGGAGCTGTTTCAACAGC < 41bp 0.861261022284381 0.652303504608766 0.06774342 0.1286749 prediction 0.41791503535123 Functional Loss - PPOX ENSG00000143224 CDS Human protein_coding chr1:161140465 chr1:161140467 stopgain 0.667 0 23 hm5C_associated_SNPs_90732 0 0 1 1 161140464 161140484 mRNA hsa-miR-653 PPOX miRanda miRanda
7313 chr13 28239970 28239970 1 + G A rs14105 28239967 + 28239947 28239987 41 CAGGCCCAGAAAGAAGAAAACCCGAAGAAACACAGAAGCCA CAGGCCCAGAAAGAAGAAAACCCAAAGAAACACAGAAGCCA < 41bp 0.757277588990257 0.548320643967519 0.1467869 0.18582284 prediction 0.417913890045477 Functional Loss - POLR1D ENSG00000186184 CDS Human protein_coding chr13:28239967 chr13:28239970 synonymous SNV . 0 24 hm5C_associated_SNPs_90735 0 0 1 2 28239966 28239989 mRNA hsa-miR-135a POLR1D miRanda miRanda
7314 chr13 28239970 28239970 1 + G A rs14105 28239967 + 28239947 28239987 41 CAGGCCCAGAAAGAAGAAAACCCGAAGAAACACAGAAGCCA CAGGCCCAGAAAGAAGAAAACCCAAAGAAACACAGAAGCCA < 41bp 0.757277588990257 0.548320643967519 0.1467869 0.18582284 prediction 0.417913890045477 Functional Loss - POLR1D ENSG00000186184 CDS Human protein_coding chr13:28239967 chr13:28239970 synonymous SNV . 0 24 hm5C_associated_SNPs_90735 0 0 1 2 28239966 28239989 mRNA hsa-miR-135b POLR1D miRanda miRanda
7315 chr5 35876356 35876356 1 + C T SKCM 35876354 + 35876334 35876374 41 GCATGTGACGCCCCTATTCTCTCCTCTTCCAGGTCCCTAGA GCATGTGACGCCCCTATTCTCTTCTCTTCCAGGTCCCTAGA < 41bp 0.708922804969728 0.439072955329228 0.20796913 0.07478854 prediction 0.417845609939456 Functional Loss - IL7R ENSG00000168685 CDS Human protein_coding chr5:35876354 chr5:35876356 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_90772 0 0 0 1 35876336 35876358 mRNA hsa-miR-185 IL7R miRanda miRanda
7316 chr1 160151560 160151560 1 + C T CESC 160151557 + 160151537 160151577 41 GTTGTGCAGTGGGCGGATCTCATCATCTCCAAGACTCGCCG GTTGTGCAGTGGGCGGATCTCATTATCTCCAAGACTCGCCG < 41bp 0.757986791439899 0.549173396114258 0.013674229 0.015089601 prediction 0.41762679065128 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160151557 chr1:160151560 synonymous SNV . 0 24 hm5C_associated_SNPs_90864 0 0 0 1 160151544 160151566 mRNA hsa-miR-143 ATP1A4 miRanda miRanda
7317 chr3 127783785 127783785 1 - C T COAD 127783788 - 127783768 127783808 41 GTAGAACGCCTCCCGAAGGGCTCGGACCTTGTCTGTGCGTG GTAGAACGCCTCCCGAAGGGCTCAGACCTTGTCTGTGCGTG < 41bp 0.772731533470503 0.563944125473722 0.15660653 0.14640331 prediction 0.417574815993563 Functional Loss - SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127783788 chr3:127783785 stopgain 0.988 1 24 hm5C_associated_SNPs_90884 0 0 1 1 127783783 127783804 mRNA hsa-miR-615-3p RUVBL1 miRanda miRanda
7318 chr11 36484190 36484190 1 + C T CESC 36484187 + 36484167 36484207 41 CCCCCGCCCCACCGGCAGTGCTCCAGTGAGCCCAACATCAC CCCCCGCCCCACCGGCAGTGCTCTAGTGAGCCCAACATCAC < 41bp 0.768292846290953 0.559527623945414 0.80323637 0.07482368 prediction 0.417530444691078 Functional Loss - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36484187 chr11:36484190 synonymous SNV . 0 24 hm5C_associated_SNPs_90910 0 0 0 1 36484186 36484211 mRNA hsa-miR-433 PRR5L miRanda miRanda
7319 chr10 38654457 38654457 1 + C T HNSC 38654455 + 38654435 38654475 41 CAAGGAAATCTAATTTCAGCCTCGAGGACTTCCAGCACAGC CAAGGAAATCTAATTTCAGCCTTGAGGACTTCCAGCACAGC < 41bp 0.70874403271023 0.432390551057197 0.08400795 0.02071035 prediction 0.417488065420459 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38654455 chr10:38654457 . . 0 23 hm5C_associated_SNPs_90925 0 0 1 1 38654436 38654458 mRNA hsa-miR-485-5p HSD17B7P2 miRanda miRanda
7320 chr10 38654458 38654458 1 + G T LUAD 38654455 + 38654435 38654475 41 CAAGGAAATCTAATTTCAGCCTCGAGGACTTCCAGCACAGC CAAGGAAATCTAATTTCAGCCTCTAGGACTTCCAGCACAGC < 41bp 0.70874403271023 0.342293834968 0.08400795 0.3527264 prediction 0.417488065420459 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38654455 chr10:38654458 . . 0 24 hm5C_associated_SNPs_90926 0 0 1 1 38654436 38654458 mRNA hsa-miR-485-5p HSD17B7P2 miRanda miRanda
7321 chr16 22019662 22019662 1 + G A UCEC 22019659 + 22019639 22019679 41 TCATCTCAGGATGTCTCTTTCTGGCCGCCGATATCTTCGCC TCATCTCAGGATGTCTCTTTCTGACCGCCGATATCTTCGCC < 41bp 0.799590240448308 0.590853682997972 0.89968383 0.70059675 prediction 0.417473114900673 Functional Loss - C16orf52 ENSG00000185716 CDS Human protein_coding chr16:22019659 chr16:22019662 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_90938 0 0 1 1 22019659 22019680 mRNA hsa-miR-31 C16orf52 miRanda miRanda
7322 chr19 21933946 21933946 1 + G A rs149889142 21933943 + 21933923 21933963 41 GCAAATCTCAAACCGATGTGCGAGACAAGAGGAAGAGCAAC GCAAATCTCAAACCGATGTGCGAAACAAGAGGAAGAGCAAC < 41bp 0.712509443166659 0.503800349297378 0.6467996 0.26105112 prediction 0.417418187738564 Functional Loss - LOC641367 ENSG00000269845 ncRNA_exonic Human transcribed_processed_pseudogene chr19:21933943 chr19:21933946 . . 0 24 hm5C_associated_SNPs_90961 0 0 0 1 21933945 21933968 mRNA hsa-miR-140-5p LOC641367 miRanda miRanda
7323 chr1 112999663 112999663 1 + G T CHOL 112999660 + 112999640 112999680 41 TCTCCAGATTCACTAGCCAACAAGGGCCAATCAAGCCAGTC TCTCCAGATTCACTAGCCAACAATGGCCAATCAAGCCAGTC < 41bp 0.708686038332292 0.323072141038654 0.09821054 0.019749254 prediction 0.417372076664585 Functional Loss - CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999660 chr1:112999663 nonsynonymous SNV 0.943 3 24 hm5C_associated_SNPs_90989 0 0 1 2 112999661 112999686 mRNA hsa-miR-7 CTTNBP2NL miRanda miRanda
7324 chr1 112999663 112999663 1 + G T CHOL 112999660 + 112999640 112999680 41 TCTCCAGATTCACTAGCCAACAAGGGCCAATCAAGCCAGTC TCTCCAGATTCACTAGCCAACAATGGCCAATCAAGCCAGTC < 41bp 0.708686038332292 0.323072141038654 0.09821054 0.019749254 prediction 0.417372076664585 Functional Loss - CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999660 chr1:112999663 nonsynonymous SNV 0.943 3 24 hm5C_associated_SNPs_90989 0 0 1 2 112999648 112999669 mRNA hsa-miR-328 CTTNBP2NL miRanda miRanda
7325 chr11 7674769 7674769 1 + G A rs115145117 7674766 + 7674746 7674786 41 ACATGAACTTCGATGCAGGTCCAGAGACCATGGACACTCCC ACATGAACTTCGATGCAGGTCCAAAGACCATGGACACTCCC < 41bp 0.757466188768113 0.548803675370339 0.3961017 0.3591873 prediction 0.417325026795548 Functional Loss - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7674766 chr11:7674769 unknown . 0 24 hm5C_associated_SNPs_91013 0 0 1 1 7674767 7674786 mRNA hsa-miR-122 PPFIBP2 miRanda miRanda
7326 chr17 73517849 73517849 1 + C T SKCM 73517846 + 73517826 73517866 41 CAACCCAAGAGTCTGGCAGCCTCCAGCCCACCTCCCTGCAG CAACCCAAGAGTCTGGCAGCCTCTAGCCCACCTCCCTGCAG < 41bp 0.749223092878438 0.540629222454378 0.92827654 0.43803075 prediction 0.41718774084812 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517846 chr17:73517849 synonymous SNV . 0 24 hm5C_associated_SNPs_91068 0 0 1 1 73517828 73517849 mRNA hsa-miR-485-5p TSEN54 miRanda miRanda
7327 chr15 40710657 40710657 1 + C T rs77680513 40710655 + 40710635 40710675 41 CCTCGCAGCCGGGCCTGTGCCACGGCTAGTGTTGTGTGATT CCTCGCAGCCGGGCCTGTGCCATGGCTAGTGTTGTGTGATT < 41bp 0.805387908867885 0.596794439875259 0.17877889 0.14128119 prediction 0.417186937985253 Functional Loss - IVD ENSG00000128928 UTR3 Human protein_coding chr15:40710655 chr15:40710657 . . 0 23 hm5C_associated_SNPs_91070 1 0 1 1 40710653 40710674 mRNA hsa-miR-377 IVD miRanda miRanda
7328 chr7 107217866 107217866 1 + G T UCEC 107217864 + 107217844 107217884 41 GTTGACATTGCTCTTGAACTCGGGACTCCTTACATGTGTTT GTTGACATTGCTCTTGAACTCGTGACTCCTTACATGTGTTT < 41bp 0.887315451476432 0.678726053157618 0.8598239 0.14957106 prediction 0.417178796637628 Functional Loss - DUS4L ENSG00000105865 CDS Human protein_coding chr7:107217864 chr7:107217866 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_91072 0 0 1 1 107217864 107217886 mRNA hsa-miR-494 DUS4L miRanda miRanda
7329 chr7 137801444 137801444 1 + C T rs1872930 137801442 + 137801422 137801462 41 CTGAACAGATTTTTCACTCCCACGAGTGCCAAGACGGTGCA CTGAACAGATTTTTCACTCCCATGAGTGCCAAGACGGTGCA < 41bp 0.811424258977022 0.602846081566957 0.44252995 0.50615233 prediction 0.417156354820129 Functional Loss - AKR1D1 ENSG00000122787 UTR3 Human protein_coding chr7:137801442 chr7:137801444 . . 0 23 hm5C_associated_SNPs_91090 1 0 0 2 137801432 137801454 mRNA hsa-miR-96 AKR1D1 miRanda miRanda
7330 chr7 137801444 137801444 1 + C T rs1872930 137801442 + 137801422 137801462 41 CTGAACAGATTTTTCACTCCCACGAGTGCCAAGACGGTGCA CTGAACAGATTTTTCACTCCCATGAGTGCCAAGACGGTGCA < 41bp 0.811424258977022 0.602846081566957 0.44252995 0.50615233 prediction 0.417156354820129 Functional Loss - AKR1D1 ENSG00000122787 UTR3 Human protein_coding chr7:137801442 chr7:137801444 . . 0 23 hm5C_associated_SNPs_91090 1 0 0 2 137801433 137801454 mRNA hsa-miR-1271 AKR1D1 miRanda miRanda
7331 chr19 58118003 58118003 1 + G A UCEC 58118000 + 58117980 58118020 41 AGCACTAACCTCTTTCGACACTGGAGAGTTCACACTGGAGT AGCACTAACCTCTTTCGACACTGAAGAGTTCACACTGGAGT < 41bp 0.818160853186712 0.609743670326792 0.2388519 0.061932653 prediction 0.416834365719839 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58118000 chr19:58118003 stopgain 0.000 0 24 hm5C_associated_SNPs_91219 0 0 1 4 58117997 58118018 mRNA hsa-miR-199a-5p ZNF530 miRanda miRanda
7332 chr19 58118003 58118003 1 + G A UCEC 58118000 + 58117980 58118020 41 AGCACTAACCTCTTTCGACACTGGAGAGTTCACACTGGAGT AGCACTAACCTCTTTCGACACTGAAGAGTTCACACTGGAGT < 41bp 0.818160853186712 0.609743670326792 0.2388519 0.061932653 prediction 0.416834365719839 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58118000 chr19:58118003 stopgain 0.000 0 24 hm5C_associated_SNPs_91219 0 0 1 4 58117982 58118004 mRNA hsa-miR-199a-5p ZNF530 miRanda miRanda
7333 chr19 58118003 58118003 1 + G A UCEC 58118000 + 58117980 58118020 41 AGCACTAACCTCTTTCGACACTGGAGAGTTCACACTGGAGT AGCACTAACCTCTTTCGACACTGAAGAGTTCACACTGGAGT < 41bp 0.818160853186712 0.609743670326792 0.2388519 0.061932653 prediction 0.416834365719839 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58118000 chr19:58118003 stopgain 0.000 0 24 hm5C_associated_SNPs_91219 0 0 1 4 58117982 58118004 mRNA hsa-miR-199b-5p ZNF530 miRanda miRanda
7334 chr19 58118003 58118003 1 + G A UCEC 58118000 + 58117980 58118020 41 AGCACTAACCTCTTTCGACACTGGAGAGTTCACACTGGAGT AGCACTAACCTCTTTCGACACTGAAGAGTTCACACTGGAGT < 41bp 0.818160853186712 0.609743670326792 0.2388519 0.061932653 prediction 0.416834365719839 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58118000 chr19:58118003 stopgain 0.000 0 24 hm5C_associated_SNPs_91219 0 0 1 4 58117998 58118018 mRNA hsa-miR-199b-5p ZNF530 miRanda miRanda
7335 chr17 42226181 42226181 1 + G A CESC 42226178 + 42226158 42226198 41 GACTAGCTCTGGATTATTTCCTCGGATACCCTTACAACCGC GACTAGCTCTGGATTATTTCCTCAGATACCCTTACAACCGC < 41bp 0.820255653363045 0.611846351696519 0.45075557 0.16150942 prediction 0.416818603333053 Functional Loss - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42226178 chr17:42226181 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_91228 0 0 1 1 42226159 42226181 mRNA hsa-miR-539 C17orf53 miRanda miRanda
7336 chr20 42199313 42199313 1 + C T SKCM 42199310 + 42199290 42199330 41 CTGGAGCCCCGGGCCAGGTTCTACGCTGCTGAGGTGGCCAG CTGGAGCCCCGGGCCAGGTTCTATGCTGCTGAGGTGGCCAG < 41bp 0.773068958996054 0.56467446707931 0.2906572 0.28161514 prediction 0.416788983833488 Functional Loss - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42199310 chr20:42199313 synonymous SNV . 0 24 hm5C_associated_SNPs_91237 0 0 0 2 42199299 42199321 mRNA hsa-miR-214 SGK2 miRanda miRanda
7337 chr20 42199313 42199313 1 + C T SKCM 42199310 + 42199290 42199330 41 CTGGAGCCCCGGGCCAGGTTCTACGCTGCTGAGGTGGCCAG CTGGAGCCCCGGGCCAGGTTCTATGCTGCTGAGGTGGCCAG < 41bp 0.773068958996054 0.56467446707931 0.2906572 0.28161514 prediction 0.416788983833488 Functional Loss - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42199310 chr20:42199313 synonymous SNV . 0 24 hm5C_associated_SNPs_91237 0 0 0 2 42199296 42199320 mRNA hsa-miR-503 SGK2 miRanda miRanda
7338 chr4 71030936 71030936 1 + C T rs138459261 71030934 + 71030914 71030954 41 ACCAGAAGATTGGGAACTTCCTCAATTACTTTGTCTTCCAT ACCAGAAGATTGGGAACTTCCTTAATTACTTTGTCTTCCAT < 41bp 0.730179328467782 0.521799703921665 0.33605397 0.053412825 prediction 0.416759249092234 Functional Loss - PRR27 ENSG00000187533 UTR3 Human protein_coding chr4:71030934 chr4:71030936 . . 0 23 hm5C_associated_SNPs_91248 0 0 0 1 71030930 71030953 mRNA hsa-miR-7 C4orf40 miRanda miRanda
7339 chr20 44048190 44048190 1 + G T UCEC 44048187 + 44048167 44048207 41 GGCAGATCGCTTGTTCCACACCAGCTACCACTCCCAGGCAG GGCAGATCGCTTGTTCCACACCATCTACCACTCCCAGGCAG < 41bp 0.708353838479801 0.350526102998652 0.13867849 0.018064976 prediction 0.416707676959603 Functional Loss - PIGT ENSG00000124155 CDS Human protein_coding chr20:44048187 chr20:44048190 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91280 0 0 1 1 44048173 44048192 mRNA hsa-miR-138 PIGT miRanda miRanda
7340 chr10 81679949 81679949 1 + G A rs45558131 81679946 + 81679926 81679966 41 GCCTGAAAGTCATTCAGAGCCAGGGGTTGTGATGGTCCCCT GCCTGAAAGTCATTCAGAGCCAGAGGTTGTGATGGTCCCCT < 41bp 0.761974077094679 0.553620353326801 0.9281304 0.9184507 prediction 0.416707447535758 Functional Loss - MBL1P ENSG00000242600 ncRNA_exonic Human transcribed_unitary_pseudogene chr10:81679946 chr10:81679949 . . 0 24 hm5C_associated_SNPs_91281 0 0 0 1 81679934 81679949 mRNA hsa-miR-149 MBL1P miRanda miRanda
7341 chr19 15791309 15791309 1 + A C STAD 15791308 + 15791288 15791328 41 TCCTATATAACGATCTTCAACAAGAGTGCAAACATCATGCT TCCTATATAACGATCTTCAACCAGAGTGCAAACATCATGCT < 41bp 0.846169691298937 0.637831838402687 0.017198801 0.016474366 prediction 0.416675705792501 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15791308 chr19:15791309 nonsynonymous SNV 0.010 0 22 hm5C_associated_SNPs_91296 0 0 1 1 15791292 15791310 mRNA hsa-miR-653 CYP4F12 miRanda miRanda
7342 chr8 24199270 24199270 1 + G T UCEC 24199267 + 24199247 24199287 41 GGAACTAAGTGTGGCGATAACAAGGTAAGTTGAAATTGTGG GGAACTAAGTGTGGCGATAACAATGTAAGTTGAAATTGTGG < 41bp 0.708289058112966 0.328181512802888 0.9039004 0.4912981 prediction 0.416578116225931 Functional Loss - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24199267 chr8:24199270 nonsynonymous SNV 0.167 1 24 hm5C_associated_SNPs_91333 0 0 0 1 24199269 24199270 mRNA hsa-miR-544 ADAM28 miRanda miRanda
7343 chr10 106974291 106974291 1 + G T LUSC 106974288 + 106974268 106974308 41 TGTGCCCTGGAAAAGCCCCTCGGGGCCTCCATGTGGTGACG TGTGCCCTGGAAAAGCCCCTCGGTGCCTCCATGTGGTGACG < 41bp 0.70828387884957 0.329203960417254 0.9025092 0.25161052 prediction 0.416567757699141 Functional Loss - SORCS3 ENSG00000156395 CDS Human protein_coding chr10:106974288 chr10:106974291 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_91336 0 0 0 1 106974286 106974307 mRNA hsa-miR-197 SORCS3 miRanda miRanda
7344 chr8 125955675 125955675 1 + G A rs552403227 125955672 + 125955652 125955692 41 CATCATCACATCTTAAATATCTCGAGTTGGTTCCCTATTGC CATCATCACATCTTAAATATCTCAAGTTGGTTCCCTATTGC < 41bp 0.708280028388882 0.491299309235293 0.14387736 0.04438302 prediction 0.416560056777765 Functional Loss - LINC00964 ENSG00000249816 ncRNA_exonic Human lincRNA chr8:125955672 chr8:125955675 . . 0 24 hm5C_associated_SNPs_91342 0 0 0 1 125955674 125955696 mRNA hsa-miR-182 LOC157381 miRanda miRanda
7345 chr19 7975940 7975940 1 + C T ACC 7975937 + 7975917 7975957 41 ACGTCAAGCCCTCCAACATCCTGCTGGACGAGCGGGGCCAG ACGTCAAGCCCTCCAACATCCTGTTGGACGAGCGGGGCCAG < 41bp 0.7082243614669 0.490162188404589 0.029548645 0.024526775 prediction 0.4164487229338 Functional Loss - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7975937 chr19:7975940 synonymous SNV . 0 24 hm5C_associated_SNPs_91395 0 0 1 1 7975922 7975943 mRNA hsa-miR-214 MAP2K7 miRanda miRanda
7346 chr10 73122834 73122834 1 + G A rs549844465 73122831 + 73122811 73122851 41 CTCCCTGGAATGGAAGTCCCCTGGCATGGTCAGTCCTCAGG CTCCCTGGAATGGAAGTCCCCTGACATGGTCAGTCCTCAGG < 41bp 0.733280550486889 0.525101341380054 0.41831842 0.30526662 prediction 0.416358418213671 Functional Loss - SLC29A3 ENSG00000198246 UTR3 Human protein_coding chr10:73122831 chr10:73122834 . . 0 24 hm5C_associated_SNPs_91445 0 0 1 1 73122827 73122849 mRNA hsa-miR-485-5p SLC29A3 miRanda miRanda
7347 chr15 45713259 45713259 1 + C T UCEC 45713256 + 45713236 45713276 41 AATAGGCTGCTTTGCTGGCTCTGCAAGAAAATGGACTAGAC AATAGGCTGCTTTGCTGGCTCTGTAAGAAAATGGACTAGAC < 41bp 0.763120195534648 0.55500204136923 0.85249054 0.32006148 prediction 0.416236308330837 Functional Loss - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45713256 chr15:45713259 stopgain 0.995 0 24 hm5C_associated_SNPs_91485 0 0 1 1 45713243 45713265 mRNA hsa-miR-544 SPATA5L1 miRanda miRanda
7348 chr3 19992420 19992420 1 + C T SKCM 19992417 + 19992397 19992437 41 AGTCGAGGCGCAACAAGACCCAACGGGCCAAATACGGGAAA AGTCGAGGCGCAACAAGACCCAATGGGCCAAATACGGGAAA < 41bp 0.728604612777348 0.520502950437442 0.06883153 0.15868586 prediction 0.416203324679811 Functional Loss - RAB5A ENSG00000144566 CDS Human protein_coding chr3:19992417 chr3:19992420 synonymous SNV . 0 24 hm5C_associated_SNPs_91499 0 0 1 3 19992412 19992436 mRNA hsa-miR-99a RAB5A miRanda miRanda
7349 chr3 19992420 19992420 1 + C T SKCM 19992417 + 19992397 19992437 41 AGTCGAGGCGCAACAAGACCCAACGGGCCAAATACGGGAAA AGTCGAGGCGCAACAAGACCCAATGGGCCAAATACGGGAAA < 41bp 0.728604612777348 0.520502950437442 0.06883153 0.15868586 prediction 0.416203324679811 Functional Loss - RAB5A ENSG00000144566 CDS Human protein_coding chr3:19992417 chr3:19992420 synonymous SNV . 0 24 hm5C_associated_SNPs_91499 0 0 1 3 19992412 19992436 mRNA hsa-miR-100 RAB5A miRanda miRanda
7350 chr3 19992420 19992420 1 + C T SKCM 19992417 + 19992397 19992437 41 AGTCGAGGCGCAACAAGACCCAACGGGCCAAATACGGGAAA AGTCGAGGCGCAACAAGACCCAATGGGCCAAATACGGGAAA < 41bp 0.728604612777348 0.520502950437442 0.06883153 0.15868586 prediction 0.416203324679811 Functional Loss - RAB5A ENSG00000144566 CDS Human protein_coding chr3:19992417 chr3:19992420 synonymous SNV . 0 24 hm5C_associated_SNPs_91499 0 0 1 3 19992415 19992436 mRNA hsa-miR-99b RAB5A miRanda miRanda
7351 chr22 42191507 42191507 1 + G A rs147958692 42191504 + 42191484 42191524 41 TTGGCTGACCTGTCTACCCTCTCGAACACCACACTCCAGGC TTGGCTGACCTGTCTACCCTCTCAAACACCACACTCCAGGC < 41bp 0.807307994134059 0.599230414024898 0.9398707 0.9090457 prediction 0.416155160218321 Functional Loss - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42191504 chr22:42191507 synonymous SNV . 0 24 hm5C_associated_SNPs_91532 0 0 0 1 42191500 42191521 mRNA hsa-miR-122 MEI1 miRanda miRanda
7352 chr9 40715843 40715843 1 + G A rs529332631 40715840 + 40715820 40715860 41 GATCAGACTCCACAGGAGACCCAGAGAAGATGTGGAGGGAG GATCAGACTCCACAGGAGACCCAAAGAAGATGTGGAGGGAG < 41bp 0.758763015276698 0.550723382360172 0.80767614 0.45431095 prediction 0.416079265833053 Functional Loss - FAM74A3 ENSG00000204844 ncRNA_exonic Human other chr9:40715840 chr9:40715843 . . 0 24 hm5C_associated_SNPs_91563 0 0 0 2 40715822 40715846 mRNA hsa-miR-330-5p FAM74A3 miRanda miRanda
7353 chr9 40715843 40715843 1 + G A rs529332631 40715840 + 40715820 40715860 41 GATCAGACTCCACAGGAGACCCAGAGAAGATGTGGAGGGAG GATCAGACTCCACAGGAGACCCAAAGAAGATGTGGAGGGAG < 41bp 0.758763015276698 0.550723382360172 0.80767614 0.45431095 prediction 0.416079265833053 Functional Loss - FAM74A3 ENSG00000204844 ncRNA_exonic Human other chr9:40715840 chr9:40715843 . . 0 24 hm5C_associated_SNPs_91563 0 0 0 2 40715829 40715846 mRNA hsa-miR-326 FAM74A3 miRanda miRanda
7354 chr11 70710158 70710158 1 + G T rs577289541 70710154 + 70710134 70710174 41 GGCCCCTCAGTCTCTACGACCTGGGCACCTTGCAAGCACAA GGCCCCTCAGTCTCTACGACCTGGTCACCTTGCAAGCACAA < 41bp 0.717994773552774 0.509963210608169 0.072674245 0.029120654 prediction 0.416063125889211 Functional Loss - SHANK2-AS3 ENSG00000171671 ncRNA_exonic Human antisense chr11:70710154 chr11:70710158 . . 0 25 hm5C_associated_SNPs_91568 0 0 0 2 70710154 70710174 mRNA hsa-miR-218 C11orf76 miRanda miRanda
7355 chr11 70710158 70710158 1 + G T rs577289541 70710154 + 70710134 70710174 41 GGCCCCTCAGTCTCTACGACCTGGGCACCTTGCAAGCACAA GGCCCCTCAGTCTCTACGACCTGGTCACCTTGCAAGCACAA < 41bp 0.717994773552774 0.509963210608169 0.072674245 0.029120654 prediction 0.416063125889211 Functional Loss - SHANK2-AS3 ENSG00000171671 ncRNA_exonic Human antisense chr11:70710154 chr11:70710158 . . 0 25 hm5C_associated_SNPs_91568 0 0 0 2 70710152 70710173 mRNA hsa-miR-431 C11orf76 miRanda miRanda
7356 chr19 12781554 12781554 1 + G C UCEC 12781550 + 12781530 12781570 41 GCTGTTGGGATTGCCGCTCACGGAGGCCTGAGCCAGTGCAG GCTGTTGGGATTGCCGCTCACGGACGCCTGAGCCAGTGCAG < 41bp 0.88775703250823 0.679795309227449 0.9214476 0.8515935 prediction 0.41592344656156 Functional Loss - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12781550 chr19:12781554 nonsynonymous SNV 0.950 0 25 hm5C_associated_SNPs_91619 0 0 1 1 12781545 12781566 mRNA hsa-miR-149 WDR83 miRanda miRanda
7357 chr19 55019131 55019131 1 + G A BLCA 55019128 + 55019108 55019148 41 GCCCTTCCCAGACCCTCCATCTCGGCTGAGCCAGGCACTGT GCCCTTCCCAGACCCTCCATCTCAGCTGAGCCAGGCACTGT < 41bp 0.818337406934142 0.610411198402459 0.17254406 0.17452952 prediction 0.415852417063365 Functional Loss - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019128 chr19:55019131 synonymous SNV . 0 24 hm5C_associated_SNPs_91641 0 0 0 2 55019119 55019140 mRNA hsa-miR-24 LAIR2 miRanda miRanda
7358 chr19 55019131 55019131 1 + G A BLCA 55019128 + 55019108 55019148 41 GCCCTTCCCAGACCCTCCATCTCGGCTGAGCCAGGCACTGT GCCCTTCCCAGACCCTCCATCTCAGCTGAGCCAGGCACTGT < 41bp 0.818337406934142 0.610411198402459 0.17254406 0.17452952 prediction 0.415852417063365 Functional Loss - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019128 chr19:55019131 synonymous SNV . 0 24 hm5C_associated_SNPs_91641 0 0 0 2 55019120 55019142 mRNA hsa-miR-149 LAIR2 miRanda miRanda
7359 chr1 11808667 11808667 1 + G T LUSC 11808665 + 11808645 11808685 41 GGGTGAGCTCCTGGTCCACACTGGTGAGGCCACCACCTCCA GGGTGAGCTCCTGGTCCACACTTGTGAGGCCACCACCTCCA < 41bp 0.911966066249663 0.704051419034942 0.3575946 0.15958539 prediction 0.415829294429441 Functional Loss - AGTRAP ENSG00000177674 CDS Human protein_coding chr1:11808665 chr1:11808667 nonsynonymous SNV 0.032 3 23 hm5C_associated_SNPs_91654 0 0 1 2 11808651 11808667 mRNA hsa-miR-199a-5p AGTRAP miRanda miRanda
7360 chr1 11808667 11808667 1 + G T LUSC 11808665 + 11808645 11808685 41 GGGTGAGCTCCTGGTCCACACTGGTGAGGCCACCACCTCCA GGGTGAGCTCCTGGTCCACACTTGTGAGGCCACCACCTCCA < 41bp 0.911966066249663 0.704051419034942 0.3575946 0.15958539 prediction 0.415829294429441 Functional Loss - AGTRAP ENSG00000177674 CDS Human protein_coding chr1:11808665 chr1:11808667 nonsynonymous SNV 0.032 3 23 hm5C_associated_SNPs_91654 0 0 1 2 11808651 11808667 mRNA hsa-miR-199b-5p AGTRAP miRanda miRanda
7361 chr2 85663670 85663670 1 + G C THCA 85663666 + 85663646 85663686 41 GTGGACAGACACAGCGGCAGCCGGGAACTCACCTGCCTGCT GTGGACAGACACAGCGGCAGCCGGCAACTCACCTGCCTGCT < 41bp 0.707797336074318 0.384518092153733 0.9197601 0.9010701 prediction 0.415594672148635 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85663666 chr2:85663670 nonsynonymous SNV 0.796 0 25 hm5C_associated_SNPs_91754 0 0 0 5 85663658 85663680 mRNA hsa-miR-196a SH2D6 miRanda miRanda
7362 chr2 85663670 85663670 1 + G C THCA 85663666 + 85663646 85663686 41 GTGGACAGACACAGCGGCAGCCGGGAACTCACCTGCCTGCT GTGGACAGACACAGCGGCAGCCGGCAACTCACCTGCCTGCT < 41bp 0.707797336074318 0.384518092153733 0.9197601 0.9010701 prediction 0.415594672148635 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85663666 chr2:85663670 nonsynonymous SNV 0.796 0 25 hm5C_associated_SNPs_91754 0 0 0 5 85663661 85663681 mRNA hsa-miR-125a-3p SH2D6 miRanda miRanda
7363 chr2 85663670 85663670 1 + G C THCA 85663666 + 85663646 85663686 41 GTGGACAGACACAGCGGCAGCCGGGAACTCACCTGCCTGCT GTGGACAGACACAGCGGCAGCCGGCAACTCACCTGCCTGCT < 41bp 0.707797336074318 0.384518092153733 0.9197601 0.9010701 prediction 0.415594672148635 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85663666 chr2:85663670 nonsynonymous SNV 0.796 0 25 hm5C_associated_SNPs_91754 0 0 0 5 85663658 85663680 mRNA hsa-miR-196b SH2D6 miRanda miRanda
7364 chr2 85663670 85663670 1 + G C THCA 85663666 + 85663646 85663686 41 GTGGACAGACACAGCGGCAGCCGGGAACTCACCTGCCTGCT GTGGACAGACACAGCGGCAGCCGGCAACTCACCTGCCTGCT < 41bp 0.707797336074318 0.384518092153733 0.9197601 0.9010701 prediction 0.415594672148635 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85663666 chr2:85663670 nonsynonymous SNV 0.796 0 25 hm5C_associated_SNPs_91754 0 0 0 5 85663661 85663683 mRNA hsa-miR-449a SH2D6 miRanda miRanda
7365 chr2 85663670 85663670 1 + G C THCA 85663666 + 85663646 85663686 41 GTGGACAGACACAGCGGCAGCCGGGAACTCACCTGCCTGCT GTGGACAGACACAGCGGCAGCCGGCAACTCACCTGCCTGCT < 41bp 0.707797336074318 0.384518092153733 0.9197601 0.9010701 prediction 0.415594672148635 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85663666 chr2:85663670 nonsynonymous SNV 0.796 0 25 hm5C_associated_SNPs_91754 0 0 0 5 85663661 85663683 mRNA hsa-miR-449b SH2D6 miRanda miRanda
7366 chr1 55509702 55509702 1 + G A UCEC 55509699 + 55509679 55509719 41 TGAAGATGAGTGGCGACCTGCTGGAGCTGGTGAGCCACCCT TGAAGATGAGTGGCGACCTGCTGAAGCTGGTGAGCCACCCT < 41bp 0.70774331450768 0.46146645433012 0.76995385 0.71860206 prediction 0.41548662901536 Functional Loss - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55509699 chr1:55509702 nonsynonymous SNV 0.733 0 24 hm5C_associated_SNPs_91796 0 0 1 1 55509681 55509702 mRNA hsa-miR-214 PCSK9 miRanda miRanda
7367 chr2 111921749 111921749 1 + C T UCEC 111921747 + 111921727 111921767 41 CCAAGCAGCCGAAGACCACCCACGAATGGTTATCTTACGAC CCAAGCAGCCGAAGACCACCCATGAATGGTTATCTTACGAC < 41bp 0.818861676833757 0.611134482979825 0.2600695 0.39760157 prediction 0.415454387707864 Functional Loss - BCL2L11 ENSG00000153094 CDS Human protein_coding chr2:111921747 chr2:111921749 stopgain 0.962 0 23 hm5C_associated_SNPs_91812 0 0 1 1 111921747 111921772 mRNA hsa-miR-132 BCL2L11 miRanda miRanda
7368 chrX 36007499 36007499 1 + C T SARC 36007496 + 36007476 36007516 41 TTGGCAGCAGGGCTTCAGTTCTCCAGAAGAAGGAGAATTTA TTGGCAGCAGGGCTTCAGTTCTCTAGAAGAAGGAGAATTTA < 41bp 0.787957797351573 0.580238309796459 0.9465547 0.9048092 prediction 0.415438975110229 Functional Loss - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:36007496 chrX:36007499 nonsynonymous SNV 0.434 3 24 hm5C_associated_SNPs_91818 0 0 0 2 36007479 36007499 mRNA hsa-miR-146a CXorf22 miRanda miRanda
7369 chrX 36007499 36007499 1 + C T SARC 36007496 + 36007476 36007516 41 TTGGCAGCAGGGCTTCAGTTCTCCAGAAGAAGGAGAATTTA TTGGCAGCAGGGCTTCAGTTCTCTAGAAGAAGGAGAATTTA < 41bp 0.787957797351573 0.580238309796459 0.9465547 0.9048092 prediction 0.415438975110229 Functional Loss - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:36007496 chrX:36007499 nonsynonymous SNV 0.434 3 24 hm5C_associated_SNPs_91818 0 0 0 2 36007478 36007499 mRNA hsa-miR-146b-5p CXorf22 miRanda miRanda
7370 chr17 18001619 18001619 1 + C T UCEC 18001616 + 18001596 18001636 41 AGTCTGATGACCTCCACGGCCAGCGAGGCAGCGTCCTATGA AGTCTGATGACCTCCACGGCCAGTGAGGCAGCGTCCTATGA < 41bp 0.707707807222178 0.489950723628537 0.273668 0.38103488 prediction 0.415415614444357 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18001616 chr17:18001619 stopgain . 0 24 hm5C_associated_SNPs_91829 0 0 1 1 18001601 18001624 mRNA hsa-miR-370 DRG2 miRanda miRanda
7371 chr10 89487100 89487100 1 + C T UCEC 89487098 + 89487078 89487118 41 CGTCTCTGCAGAGGATAAGACACGGCTGGAAGGGTGCAGCA CGTCTCTGCAGAGGATAAGACATGGCTGGAAGGGTGCAGCA < 41bp 0.863468072280902 0.655767417054363 0.8390894 0.6708367 prediction 0.415401310453078 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89487098 chr10:89487100 nonsynonymous SNV 0.904 3 23 hm5C_associated_SNPs_91834 0 0 0 1 89487079 89487102 mRNA hsa-miR-187 PAPSS2 miRanda miRanda
7372 chr11 1104296 1104296 1 + G A rs7928098 1104293 + 1104273 1104313 41 GCACAGCCCCCTTCACTGCCCTCGACAGCTTTACCTCCCCC GCACAGCCCCCTTCACTGCCCTCAACAGCTTTACCTCCCCC < 41bp 0.707675418241026 0.483956170685459 0.4438799 0.1990605 prediction 0.415350836482052 Functional Loss - MUC2 ENSG00000198788 UTR3 Human processed_transcript chr11:1104293 chr11:1104296 . . 0 24 hm5C_associated_SNPs_91865 0 0 0 4 1104286 1104305 mRNA hsa-miR-320a MUC2 miRanda miRanda
7373 chr11 1104296 1104296 1 + G A rs7928098 1104293 + 1104273 1104313 41 GCACAGCCCCCTTCACTGCCCTCGACAGCTTTACCTCCCCC GCACAGCCCCCTTCACTGCCCTCAACAGCTTTACCTCCCCC < 41bp 0.707675418241026 0.483956170685459 0.4438799 0.1990605 prediction 0.415350836482052 Functional Loss - MUC2 ENSG00000198788 UTR3 Human processed_transcript chr11:1104293 chr11:1104296 . . 0 24 hm5C_associated_SNPs_91865 0 0 0 4 1104286 1104305 mRNA hsa-miR-320b MUC2 miRanda miRanda
7374 chr11 1104296 1104296 1 + G A rs7928098 1104293 + 1104273 1104313 41 GCACAGCCCCCTTCACTGCCCTCGACAGCTTTACCTCCCCC GCACAGCCCCCTTCACTGCCCTCAACAGCTTTACCTCCCCC < 41bp 0.707675418241026 0.483956170685459 0.4438799 0.1990605 prediction 0.415350836482052 Functional Loss - MUC2 ENSG00000198788 UTR3 Human processed_transcript chr11:1104293 chr11:1104296 . . 0 24 hm5C_associated_SNPs_91865 0 0 0 4 1104288 1104305 mRNA hsa-miR-320c MUC2 miRanda miRanda
7375 chr11 1104296 1104296 1 + G A rs7928098 1104293 + 1104273 1104313 41 GCACAGCCCCCTTCACTGCCCTCGACAGCTTTACCTCCCCC GCACAGCCCCCTTCACTGCCCTCAACAGCTTTACCTCCCCC < 41bp 0.707675418241026 0.483956170685459 0.4438799 0.1990605 prediction 0.415350836482052 Functional Loss - MUC2 ENSG00000198788 UTR3 Human processed_transcript chr11:1104293 chr11:1104296 . . 0 24 hm5C_associated_SNPs_91865 0 0 0 4 1104289 1104305 mRNA hsa-miR-320d MUC2 miRanda miRanda
7376 chr4 83996502 83996502 1 + A T LUAD 83996500 + 83996480 83996520 41 AGATCCAATCACTTTGTTTCCAAGTGAATAACCTTTTGGAG AGATCCAATCACTTTGTTTCCATGTGAATAACCTTTTGGAG < 41bp 0.718311956710441 0.510639040700359 0.8967538 0.64649117 prediction 0.415345832020163 Functional Loss - COPS4 ENSG00000138663 CDS Human protein_coding chr4:83996500 chr4:83996502 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_91866 0 0 1 1 83996494 83996514 mRNA hsa-miR-154 COPS4 miRanda miRanda
7377 chr6 31555086 31555086 1 + C T UCEC 31555084 + 31555064 31555104 41 GATCCCTGACCTAATGTTATCGCGGAATGATGGTAAGTAAA GATCCCTGACCTAATGTTATCGTGGAATGATGGTAAGTAAA < 41bp 0.717127484479912 0.509459322234777 0.70268977 0.42611384 prediction 0.415336324490269 Functional Loss - LST1 ENSG00000204482 CDS Human protein_coding chr6:31555084 chr6:31555086 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_91874 0 0 0 2 31555080 31555095 mRNA hsa-miR-18a LST1 miRanda miRanda
7378 chr6 31555086 31555086 1 + C T UCEC 31555084 + 31555064 31555104 41 GATCCCTGACCTAATGTTATCGCGGAATGATGGTAAGTAAA GATCCCTGACCTAATGTTATCGTGGAATGATGGTAAGTAAA < 41bp 0.717127484479912 0.509459322234777 0.70268977 0.42611384 prediction 0.415336324490269 Functional Loss - LST1 ENSG00000204482 CDS Human protein_coding chr6:31555084 chr6:31555086 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_91874 0 0 0 2 31555079 31555095 mRNA hsa-miR-18b LST1 miRanda miRanda
7379 chr7 107217859 107217859 1 + G A CESC 107217856 + 107217836 107217876 41 GGGACTGGGTTGACATTGCTCTTGAACTCGGGACTCCTTAC GGGACTGGGTTGACATTGCTCTTAAACTCGGGACTCCTTAC < 41bp 0.734509015951853 0.526846601662622 0.059040934 0.12250617 prediction 0.415324828578462 Functional Loss - DUS4L ENSG00000105865 CDS Human protein_coding chr7:107217856 chr7:107217859 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_91879 0 0 1 1 107217838 107217860 mRNA hsa-miR-335 DUS4L miRanda miRanda
7380 chr2 29354162 29354162 1 + G A SKCM 29354159 + 29354139 29354179 41 ATCCTAATGATGCATCATGCCAGGAAATTCTTTTTGATCCC ATCCTAATGATGCATCATGCCAGAAAATTCTTTTTGATCCC < 41bp 0.749944046014721 0.542339395785122 0.33869916 0.15667707 prediction 0.415209300459198 Functional Loss - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29354159 chr2:29354162 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_91935 0 0 1 1 29354152 29354172 mRNA hsa-miR-186 CLIP4 miRanda miRanda
7381 chr20 43545480 43545480 1 + C T SKCM 43545477 + 43545457 43545497 41 GCCGCACAGCAGGCCATCAACACCATGAATGGGATGCTGCT GCCGCACAGCAGGCCATCAACACTATGAATGGGATGCTGCT < 41bp 0.742667368569609 0.535064322650092 0.1635415 0.124865174 prediction 0.415206091839035 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545477 chr20:43545480 synonymous SNV . 0 24 hm5C_associated_SNPs_91936 0 0 1 9 43545472 43545498 mRNA hsa-miR-15a PABPC1L miRanda miRanda
7382 chr20 43545480 43545480 1 + C T SKCM 43545477 + 43545457 43545497 41 GCCGCACAGCAGGCCATCAACACCATGAATGGGATGCTGCT GCCGCACAGCAGGCCATCAACACTATGAATGGGATGCTGCT < 41bp 0.742667368569609 0.535064322650092 0.1635415 0.124865174 prediction 0.415206091839035 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545477 chr20:43545480 synonymous SNV . 0 24 hm5C_associated_SNPs_91936 0 0 1 9 43545477 43545498 mRNA hsa-miR-16 PABPC1L miRanda miRanda
7383 chr20 43545480 43545480 1 + C T SKCM 43545477 + 43545457 43545497 41 GCCGCACAGCAGGCCATCAACACCATGAATGGGATGCTGCT GCCGCACAGCAGGCCATCAACACTATGAATGGGATGCTGCT < 41bp 0.742667368569609 0.535064322650092 0.1635415 0.124865174 prediction 0.415206091839035 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545477 chr20:43545480 synonymous SNV . 0 24 hm5C_associated_SNPs_91936 0 0 1 9 43545473 43545497 mRNA hsa-miR-103 PABPC1L miRanda miRanda
7384 chr20 43545480 43545480 1 + C T SKCM 43545477 + 43545457 43545497 41 GCCGCACAGCAGGCCATCAACACCATGAATGGGATGCTGCT GCCGCACAGCAGGCCATCAACACTATGAATGGGATGCTGCT < 41bp 0.742667368569609 0.535064322650092 0.1635415 0.124865174 prediction 0.415206091839035 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545477 chr20:43545480 synonymous SNV . 0 24 hm5C_associated_SNPs_91936 0 0 1 9 43545473 43545497 mRNA hsa-miR-107 PABPC1L miRanda miRanda
7385 chr20 43545480 43545480 1 + C T SKCM 43545477 + 43545457 43545497 41 GCCGCACAGCAGGCCATCAACACCATGAATGGGATGCTGCT GCCGCACAGCAGGCCATCAACACTATGAATGGGATGCTGCT < 41bp 0.742667368569609 0.535064322650092 0.1635415 0.124865174 prediction 0.415206091839035 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545477 chr20:43545480 synonymous SNV . 0 24 hm5C_associated_SNPs_91936 0 0 1 9 43545473 43545498 mRNA hsa-miR-15b PABPC1L miRanda miRanda
7386 chr20 43545480 43545480 1 + C T SKCM 43545477 + 43545457 43545497 41 GCCGCACAGCAGGCCATCAACACCATGAATGGGATGCTGCT GCCGCACAGCAGGCCATCAACACTATGAATGGGATGCTGCT < 41bp 0.742667368569609 0.535064322650092 0.1635415 0.124865174 prediction 0.415206091839035 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545477 chr20:43545480 synonymous SNV . 0 24 hm5C_associated_SNPs_91936 0 0 1 9 43545477 43545498 mRNA hsa-miR-195 PABPC1L miRanda miRanda
7387 chr20 43545480 43545480 1 + C T SKCM 43545477 + 43545457 43545497 41 GCCGCACAGCAGGCCATCAACACCATGAATGGGATGCTGCT GCCGCACAGCAGGCCATCAACACTATGAATGGGATGCTGCT < 41bp 0.742667368569609 0.535064322650092 0.1635415 0.124865174 prediction 0.415206091839035 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545477 chr20:43545480 synonymous SNV . 0 24 hm5C_associated_SNPs_91936 0 0 1 9 43545470 43545494 mRNA hsa-miR-324-5p PABPC1L miRanda miRanda
7388 chr20 43545480 43545480 1 + C T SKCM 43545477 + 43545457 43545497 41 GCCGCACAGCAGGCCATCAACACCATGAATGGGATGCTGCT GCCGCACAGCAGGCCATCAACACTATGAATGGGATGCTGCT < 41bp 0.742667368569609 0.535064322650092 0.1635415 0.124865174 prediction 0.415206091839035 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545477 chr20:43545480 synonymous SNV . 0 24 hm5C_associated_SNPs_91936 0 0 1 9 43545472 43545498 mRNA hsa-miR-424 PABPC1L miRanda miRanda
7389 chr20 43545480 43545480 1 + C T SKCM 43545477 + 43545457 43545497 41 GCCGCACAGCAGGCCATCAACACCATGAATGGGATGCTGCT GCCGCACAGCAGGCCATCAACACTATGAATGGGATGCTGCT < 41bp 0.742667368569609 0.535064322650092 0.1635415 0.124865174 prediction 0.415206091839035 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545477 chr20:43545480 synonymous SNV . 0 24 hm5C_associated_SNPs_91936 0 0 1 9 43545474 43545498 mRNA hsa-miR-497 PABPC1L miRanda miRanda
7390 chr4 39482578 39482578 1 + C T UCEC 39482576 + 39482556 39482596 41 TTGTGAAAACAGGGAAGTGCCACAAGACTGCTAGCTCACTC TTGTGAAAACAGGGAAGTGCCATAAGACTGCTAGCTCACTC < 41bp 0.825672222045583 0.618069744941121 0.122425854 0.16600585 prediction 0.415204954208924 Functional Loss - LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482576 chr4:39482578 . . 0 23 hm5C_associated_SNPs_91937 0 0 0 3 39482574 39482596 mRNA hsa-miR-28-5p LOC401127 miRanda miRanda
7391 chr4 39482578 39482578 1 + C T UCEC 39482576 + 39482556 39482596 41 TTGTGAAAACAGGGAAGTGCCACAAGACTGCTAGCTCACTC TTGTGAAAACAGGGAAGTGCCATAAGACTGCTAGCTCACTC < 41bp 0.825672222045583 0.618069744941121 0.122425854 0.16600585 prediction 0.415204954208924 Functional Loss - LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482576 chr4:39482578 . . 0 23 hm5C_associated_SNPs_91937 0 0 0 3 39482570 39482592 mRNA hsa-miR-497 LOC401127 miRanda miRanda
7392 chr4 39482578 39482578 1 + C T UCEC 39482576 + 39482556 39482596 41 TTGTGAAAACAGGGAAGTGCCACAAGACTGCTAGCTCACTC TTGTGAAAACAGGGAAGTGCCATAAGACTGCTAGCTCACTC < 41bp 0.825672222045583 0.618069744941121 0.122425854 0.16600585 prediction 0.415204954208924 Functional Loss - LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482576 chr4:39482578 . . 0 23 hm5C_associated_SNPs_91937 0 0 0 3 39482574 39482596 mRNA hsa-miR-708 LOC401127 miRanda miRanda
7393 chr6 71571624 71571624 1 + C T COAD 71571622 + 71571602 71571642 41 TTGCATCCCTGGCTGGGATCCACGACGCTTAAATACAGCTT TTGCATCCCTGGCTGGGATCCATGACGCTTAAATACAGCTT < 41bp 0.772081690974499 0.564506296842104 0.120390534 0.17898285 prediction 0.41515078826479 Functional Loss - B3GAT2 ENSG00000112309 CDS Human protein_coding chr6:71571622 chr6:71571624 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_91963 0 0 1 3 71571624 71571644 mRNA hsa-miR-320a SMAP1 miRanda miRanda
7394 chr6 71571624 71571624 1 + C T COAD 71571622 + 71571602 71571642 41 TTGCATCCCTGGCTGGGATCCACGACGCTTAAATACAGCTT TTGCATCCCTGGCTGGGATCCATGACGCTTAAATACAGCTT < 41bp 0.772081690974499 0.564506296842104 0.120390534 0.17898285 prediction 0.41515078826479 Functional Loss - B3GAT2 ENSG00000112309 CDS Human protein_coding chr6:71571622 chr6:71571624 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_91963 0 0 1 3 71571624 71571644 mRNA hsa-miR-320b SMAP1 miRanda miRanda
7395 chr6 71571624 71571624 1 + C T COAD 71571622 + 71571602 71571642 41 TTGCATCCCTGGCTGGGATCCACGACGCTTAAATACAGCTT TTGCATCCCTGGCTGGGATCCATGACGCTTAAATACAGCTT < 41bp 0.772081690974499 0.564506296842104 0.120390534 0.17898285 prediction 0.41515078826479 Functional Loss - B3GAT2 ENSG00000112309 CDS Human protein_coding chr6:71571622 chr6:71571624 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_91963 0 0 1 3 71571624 71571644 mRNA hsa-miR-320c SMAP1 miRanda miRanda
7396 chr1 108023429 108023429 1 + G A COAD 108023426 + 108023406 108023446 41 CCAGCGCTGCTGCTGCTGACCACGCTGCTGGGAACCGCCAG CCAGCGCTGCTGCTGCTGACCACACTGCTGGGAACCGCCAG < 41bp 0.707557715710896 0.475403008401777 0.10637221 0.06792754 prediction 0.415115431421792 Functional Loss - NTNG1 ENSG00000162631 CDS Human protein_coding chr1:108023426 chr1:108023429 synonymous SNV . 0 24 hm5C_associated_SNPs_91981 0 0 0 1 108023425 108023435 mRNA hsa-miR-503 NTNG1 miRanda miRanda
7397 chr13 49749622 49749622 1 + G A UCEC 49749619 + 49749599 49749639 41 CTTACAATGGAGTAAGCCCTCAGGAACACCATCAGATGAAG CTTACAATGGAGTAAGCCCTCAGAAACACCATCAGATGAAG < 41bp 0.760615245720905 0.55308447341125 0.43153203 0.23912919 prediction 0.41506154461931 Functional Loss - FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49749619 chr13:49749622 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_92005 0 0 1 1 49749621 49749641 mRNA hsa-miR-205 FNDC3A miRanda miRanda
7398 chr1 93299177 93299177 1 + G T UCEC 93299175 + 93299155 93299195 41 AAATACAACACACCCAAATACAGGATGATAGTTCGTGTGAC AAATACAACACACCCAAATACATGATGATAGTTCGTGTGAC < 41bp 0.796886524548805 0.589361414594402 0.8107363 0.13400075 prediction 0.415050219908805 Functional Loss - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93299175 chr1:93299177 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_92011 0 0 1 2 93299172 93299195 mRNA hsa-miR-377 RPL5 miRanda miRanda
7399 chr1 93299177 93299177 1 + G T UCEC 93299175 + 93299155 93299195 41 AAATACAACACACCCAAATACAGGATGATAGTTCGTGTGAC AAATACAACACACCCAAATACATGATGATAGTTCGTGTGAC < 41bp 0.796886524548805 0.589361414594402 0.8107363 0.13400075 prediction 0.415050219908805 Functional Loss - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93299175 chr1:93299177 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_92011 0 0 1 2 93299158 93299179 mRNA hsa-miR-486-5p RPL5 miRanda miRanda
7400 chr12 13232828 13232828 1 + G C LUAD 13232824 + 13232804 13232844 41 TGGTGGTCAGCAAGCTTAGTCTACGGTGGGCACTAATGGAG TGGTGGTCAGCAAGCTTAGTCTACCGTGGGCACTAATGGAG < 41bp 0.707508463700643 0.417651758454388 0.09083122 0.09674612 prediction 0.415016927401285 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232824 chr12:13232828 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_92034 0 0 0 1 13232825 13232850 mRNA hsa-miR-328 KIAA1467 miRanda miRanda
7401 chr5 7873555 7873555 1 + G A GBM 7873552 + 7873532 7873572 41 CCACGGGCACCGGAGACCCACCCGACACAGCCCGCAAGTTT CCACGGGCACCGGAGACCCACCCAACACAGCCCGCAAGTTT < 41bp 0.707490594745764 0.481919096629601 0.026079744 0.04292372 prediction 0.414981189491527 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7873552 chr5:7873555 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_92053 0 0 0 1 7873554 7873576 mRNA hsa-miR-495 MTRR miRanda miRanda
7402 chr5 7873554 7873554 1 + C T UCEC 7873552 + 7873532 7873572 41 CCACGGGCACCGGAGACCCACCCGACACAGCCCGCAAGTTT CCACGGGCACCGGAGACCCACCTGACACAGCCCGCAAGTTT < 41bp 0.707490594745764 0.422084839532712 0.026079744 0.032928616 prediction 0.414981189491527 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7873552 chr5:7873554 synonymous SNV . 0 23 hm5C_associated_SNPs_92054 0 0 0 1 7873554 7873576 mRNA hsa-miR-495 MTRR miRanda miRanda
7403 chr17 48245006 48245006 1 + G A GBM 48245003 + 48244983 48245023 41 CCAGGGACACCCAGACCTGCCCCGGTGGCTCCGCTACACCC CCAGGGACACCCAGACCTGCCCCAGTGGCTCCGCTACACCC < 41bp 0.707476780847646 0.453628948361527 0.34246513 0.100339085 prediction 0.414953561695293 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245003 chr17:48245006 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_92066 0 0 0 1 48245004 48245027 mRNA hsa-miR-138 SGCA miRanda miRanda
7404 chr1 43042734 43042734 1 + G T SARC 43042732 + 43042712 43042752 41 GCCCAACAGAAGTTATTAGACAGCACAAAGATGTGCTCTTC GCCCAACAGAAGTTATTAGACATCACAAAGATGTGCTCTTC < 41bp 0.707435683773804 0.364764594215351 0.11187056 0.11966726 prediction 0.414871367547608 Functional Loss - CCDC30 ENSG00000186409 CDS Human protein_coding chr1:43042732 chr1:43042734 nonsynonymous SNV 0.773 2 23 hm5C_associated_SNPs_92099 0 0 0 1 43042717 43042739 mRNA hsa-miR-210 CCDC30 miRanda miRanda
7405 chr1 100159835 100159835 1 + G A rs575560088 100159832 + 100159812 100159852 41 TAACTTTTCCAGTTACTTGACACGATTCAGTGGGGGAAAAC TAACTTTTCCAGTTACTTGACACAATTCAGTGGGGGAAAAC < 41bp 0.741013441883908 0.533678600239136 0.020585448 0.016183585 prediction 0.414669683289543 Functional Loss - MIR548AA1 ENSG00000099260 UTR3 Human protein_coding chr1:100159832 chr1:100159835 . . 0 24 hm5C_associated_SNPs_92184 0 0 0 2 100159814 100159836 mRNA hsa-miR-187 PALMD miRanda miRanda
7406 chr1 100159835 100159835 1 + G A rs575560088 100159832 + 100159812 100159852 41 TAACTTTTCCAGTTACTTGACACGATTCAGTGGGGGAAAAC TAACTTTTCCAGTTACTTGACACAATTCAGTGGGGGAAAAC < 41bp 0.741013441883908 0.533678600239136 0.020585448 0.016183585 prediction 0.414669683289543 Functional Loss - MIR548AA1 ENSG00000099260 UTR3 Human protein_coding chr1:100159832 chr1:100159835 . . 0 24 hm5C_associated_SNPs_92184 0 0 0 2 100159835 100159857 mRNA hsa-miR-138 PALMD miRanda miRanda
7407 chr2 85663599 85663599 1 + C T SKCM 85663597 + 85663577 85663617 41 CTCCCTGGCCAGCTCTTCTCCTCCGTGGCGGCCATGGTCCA CTCCCTGGCCAGCTCTTCTCCTTCGTGGCGGCCATGGTCCA < 41bp 0.707268377153656 0.421634044434224 0.05028391 0.075410396 prediction 0.414536754307311 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85663597 chr2:85663599 nonsynonymous SNV 0.037 4 23 hm5C_associated_SNPs_92225 0 0 0 1 85663589 85663601 mRNA hsa-miR-185 SH2D6 miRanda miRanda
7408 chr2 85663600 85663600 1 + C T UCEC 85663597 + 85663577 85663617 41 CTCCCTGGCCAGCTCTTCTCCTCCGTGGCGGCCATGGTCCA CTCCCTGGCCAGCTCTTCTCCTCTGTGGCGGCCATGGTCCA < 41bp 0.707268377153656 0.490321581816719 0.05028391 0.0652051 prediction 0.414536754307311 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85663597 chr2:85663600 synonymous SNV . 0 24 hm5C_associated_SNPs_92226 0 0 0 5 85663589 85663601 mRNA hsa-miR-185 SH2D6 miRanda miRanda
7409 chr2 85663600 85663600 1 + C T UCEC 85663597 + 85663577 85663617 41 CTCCCTGGCCAGCTCTTCTCCTCCGTGGCGGCCATGGTCCA CTCCCTGGCCAGCTCTTCTCCTCTGTGGCGGCCATGGTCCA < 41bp 0.707268377153656 0.490321581816719 0.05028391 0.0652051 prediction 0.414536754307311 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85663597 chr2:85663600 synonymous SNV . 0 24 hm5C_associated_SNPs_92226 0 0 0 5 85663600 85663624 mRNA hsa-miR-302a SH2D6 miRanda miRanda
7410 chr2 85663600 85663600 1 + C T UCEC 85663597 + 85663577 85663617 41 CTCCCTGGCCAGCTCTTCTCCTCCGTGGCGGCCATGGTCCA CTCCCTGGCCAGCTCTTCTCCTCTGTGGCGGCCATGGTCCA < 41bp 0.707268377153656 0.490321581816719 0.05028391 0.0652051 prediction 0.414536754307311 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85663597 chr2:85663600 synonymous SNV . 0 24 hm5C_associated_SNPs_92226 0 0 0 5 85663600 85663624 mRNA hsa-miR-302b SH2D6 miRanda miRanda
7411 chr2 85663600 85663600 1 + C T UCEC 85663597 + 85663577 85663617 41 CTCCCTGGCCAGCTCTTCTCCTCCGTGGCGGCCATGGTCCA CTCCCTGGCCAGCTCTTCTCCTCTGTGGCGGCCATGGTCCA < 41bp 0.707268377153656 0.490321581816719 0.05028391 0.0652051 prediction 0.414536754307311 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85663597 chr2:85663600 synonymous SNV . 0 24 hm5C_associated_SNPs_92226 0 0 0 5 85663600 85663624 mRNA hsa-miR-302c SH2D6 miRanda miRanda
7412 chr2 85663600 85663600 1 + C T UCEC 85663597 + 85663577 85663617 41 CTCCCTGGCCAGCTCTTCTCCTCCGTGGCGGCCATGGTCCA CTCCCTGGCCAGCTCTTCTCCTCTGTGGCGGCCATGGTCCA < 41bp 0.707268377153656 0.490321581816719 0.05028391 0.0652051 prediction 0.414536754307311 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85663597 chr2:85663600 synonymous SNV . 0 24 hm5C_associated_SNPs_92226 0 0 0 5 85663600 85663624 mRNA hsa-miR-302d SH2D6 miRanda miRanda
7413 chr6 96986556 96986556 1 + A C COAD 96986552 + 96986532 96986572 41 TTGAAGATGCTGCCATATTGCTTCAGCAGGTGATGAGGGCA TTGAAGATGCTGCCATATTGCTTCCGCAGGTGATGAGGGCA < 41bp 0.707260476829945 0.291194575764237 0.020240068 0.025437415 prediction 0.41452095365989 Functional Loss - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96986552 chr6:96986556 nonsynonymous SNV 0.984 1 25 hm5C_associated_SNPs_92231 0 0 1 2 96986556 96986575 mRNA hsa-miR-365 KIAA0776 miRanda miRanda
7414 chr6 96986556 96986556 1 + A C COAD 96986552 + 96986532 96986572 41 TTGAAGATGCTGCCATATTGCTTCAGCAGGTGATGAGGGCA TTGAAGATGCTGCCATATTGCTTCCGCAGGTGATGAGGGCA < 41bp 0.707260476829945 0.291194575764237 0.020240068 0.025437415 prediction 0.41452095365989 Functional Loss - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96986552 chr6:96986556 nonsynonymous SNV 0.984 1 25 hm5C_associated_SNPs_92231 0 0 1 2 96986541 96986562 mRNA hsa-miR-370 KIAA0776 miRanda miRanda
7415 chr2 27261663 27261663 1 + A C LUAD 27261662 + 27261642 27261682 41 AGTAACAACCAGGATGTCGTCACCTGTGACATGGCCTGCAA AGTAACAACCAGGATGTCGTCCCCTGTGACATGGCCTGCAA < 41bp 0.8442300475545 0.63704114157219 0.6450331 0.19464824 prediction 0.414377811964619 Functional Loss - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27261662 chr2:27261663 nonsynonymous SNV 0.065 0 22 hm5C_associated_SNPs_92283 0 0 1 2 27261650 27261671 mRNA hsa-miR-27a TMEM214 miRanda miRanda
7416 chr2 27261663 27261663 1 + A C LUAD 27261662 + 27261642 27261682 41 AGTAACAACCAGGATGTCGTCACCTGTGACATGGCCTGCAA AGTAACAACCAGGATGTCGTCCCCTGTGACATGGCCTGCAA < 41bp 0.8442300475545 0.63704114157219 0.6450331 0.19464824 prediction 0.414377811964619 Functional Loss - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27261662 chr2:27261663 nonsynonymous SNV 0.065 0 22 hm5C_associated_SNPs_92283 0 0 1 2 27261650 27261671 mRNA hsa-miR-27b TMEM214 miRanda miRanda
7417 chr1 23966983 23966983 1 + G A rs10917405 23966980 + 23966960 23967000 41 ACCCAGGGAGAGAGCCCTCACCAGGAATCTGCTGGCACCTT ACCCAGGGAGAGAGCCCTCACCAAGAATCTGCTGGCACCTT < 41bp 0.707159110506741 0.455573751915777 0.844883 0.37117168 prediction 0.414318221013483 Functional Loss - MDS2 ENSG00000197880 CDS Human protein_coding chr1:23966980 chr1:23966983 nonsynonymous SNV 0.837 0 24 hm5C_associated_SNPs_92311 0 0 0 1 23966979 23967001 mRNA hsa-miR-18b MDS2 miRanda miRanda
7418 chr6 32609255 32609255 1 + G T rs1142332 32609251 + 32609231 32609271 41 AATTTGGAGGTTTTGACCCGCAGGGTGCACTGAGAAACATG AATTTGGAGGTTTTGACCCGCAGGTTGCACTGAGAAACATG < 41bp 0.723362674237042 0.516209510456852 0.83783555 0.51327974 prediction 0.414306327560379 Functional Loss - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32609251 chr6:32609255 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_92315 0 0 0 3 32609242 32609263 mRNA hsa-miR-148a HLA-DQA1 miRanda miRanda
7419 chr6 32609255 32609255 1 + G T rs1142332 32609251 + 32609231 32609271 41 AATTTGGAGGTTTTGACCCGCAGGGTGCACTGAGAAACATG AATTTGGAGGTTTTGACCCGCAGGTTGCACTGAGAAACATG < 41bp 0.723362674237042 0.516209510456852 0.83783555 0.51327974 prediction 0.414306327560379 Functional Loss - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32609251 chr6:32609255 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_92315 0 0 0 3 32609236 32609263 mRNA hsa-miR-152 HLA-DQA1 miRanda miRanda
7420 chr6 32609255 32609255 1 + G T rs1142332 32609251 + 32609231 32609271 41 AATTTGGAGGTTTTGACCCGCAGGGTGCACTGAGAAACATG AATTTGGAGGTTTTGACCCGCAGGTTGCACTGAGAAACATG < 41bp 0.723362674237042 0.516209510456852 0.83783555 0.51327974 prediction 0.414306327560379 Functional Loss - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32609251 chr6:32609255 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_92315 0 0 0 3 32609242 32609263 mRNA hsa-miR-148b HLA-DQA1 miRanda miRanda
7421 chr9 130924526 130924526 1 + T C rs2900262 130924525 + 130924505 130924545 41 TAGGCAACGGGTGCCCTTTCCTAGAACACAGGCACATATGC TAGGCAACGGGTGCCCTTTCCCAGAACACAGGCACATATGC < 41bp 0.754047623913163 0.546905270473504 0.27256045 0.3545698 prediction 0.414284706879318 Functional Loss - C9orf16 ENSG00000171159 intronic Human protein_coding chr9:130924525 chr9:130924526 . . 0 22 hm5C_associated_SNPs_92322 0 0 0 1 130924521 130924542 mRNA hsa-miR-455-5p C9orf16 miRanda miRanda
7422 chr20 44049033 44049033 1 + G C LUAD 44049029 + 44049009 44049049 41 GGAGCCCTGCCCCCTGGCTTCAGAGAGCCGAGTCTATGTGG GGAGCCCTGCCCCCTGGCTTCAGACAGCCGAGTCTATGTGG < 41bp 0.86244467843454 0.655305736990608 0.8878269 0.21690115 prediction 0.414277882887863 Functional Loss - PIGT ENSG00000124155 CDS Human protein_coding chr20:44049029 chr20:44049033 nonsynonymous SNV 0.970 0 25 hm5C_associated_SNPs_92327 0 0 1 1 44049028 44049048 mRNA hsa-miR-376c PIGT miRanda miRanda
7423 chr12 129442131 129442131 1 + C T rs141781055 129442129 + 129442109 129442149 41 CGGTATTGGCCAGGAACATCCCCGGGAATGCTGCCGTGGTG CGGTATTGGCCAGGAACATCCCTGGGAATGCTGCCGTGGTG < 41bp 0.7071239048178 0.423567907655406 0.56102204 0.34688264 prediction 0.4142478096356 Functional Loss - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129442129 chr12:129442131 synonymous SNV . 0 23 hm5C_associated_SNPs_92348 0 0 0 3 129442122 129442143 mRNA hsa-miR-103 GLT1D1 miRanda miRanda
7424 chr12 129442131 129442131 1 + C T rs141781055 129442129 + 129442109 129442149 41 CGGTATTGGCCAGGAACATCCCCGGGAATGCTGCCGTGGTG CGGTATTGGCCAGGAACATCCCTGGGAATGCTGCCGTGGTG < 41bp 0.7071239048178 0.423567907655406 0.56102204 0.34688264 prediction 0.4142478096356 Functional Loss - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129442129 chr12:129442131 synonymous SNV . 0 23 hm5C_associated_SNPs_92348 0 0 0 3 129442122 129442143 mRNA hsa-miR-107 GLT1D1 miRanda miRanda
7425 chr12 129442131 129442131 1 + C T rs141781055 129442129 + 129442109 129442149 41 CGGTATTGGCCAGGAACATCCCCGGGAATGCTGCCGTGGTG CGGTATTGGCCAGGAACATCCCTGGGAATGCTGCCGTGGTG < 41bp 0.7071239048178 0.423567907655406 0.56102204 0.34688264 prediction 0.4142478096356 Functional Loss - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129442129 chr12:129442131 synonymous SNV . 0 23 hm5C_associated_SNPs_92348 0 0 0 3 129442130 129442151 mRNA hsa-miR-197 GLT1D1 miRanda miRanda
7426 chr14 93695018 93695018 1 + G A rs3742709 93695015 + 93694995 93695035 41 CAGAGGGCTCCGTTCAAAGGCTCGGGGTGTCTTTGAGGTTG CAGAGGGCTCCGTTCAAAGGCTCAGGGTGTCTTTGAGGTTG < 41bp 0.771605497480535 0.56448242852629 0.052389592 0.02754888 prediction 0.41424613790849 Functional Loss - UBR7 ENSG00000012963 UTR3 Human protein_coding chr14:93695015 chr14:93695018 . . 0 24 hm5C_associated_SNPs_92349 0 0 1 1 93694995 93695020 mRNA hsa-miR-615-3p UBR7 miRanda miRanda
7427 chr15 89195347 89195347 1 + C T UCEC 89195344 + 89195324 89195364 41 CATGTCTTCCTGGCCAGATCCTGCAGCTCCTGAAAGGCAAG CATGTCTTCCTGGCCAGATCCTGTAGCTCCTGAAAGGCAAG < 41bp 0.707115412666383 0.496486151095246 0.8427144 0.74966574 prediction 0.414230825332766 Functional Loss - ISG20 ENSG00000172183 CDS Human protein_coding chr15:89195344 chr15:89195347 stopgain 1.000 0 24 hm5C_associated_SNPs_92355 0 0 0 2 89195333 89195355 mRNA hsa-miR-28-5p ISG20 miRanda miRanda
7428 chr15 89195347 89195347 1 + C T UCEC 89195344 + 89195324 89195364 41 CATGTCTTCCTGGCCAGATCCTGCAGCTCCTGAAAGGCAAG CATGTCTTCCTGGCCAGATCCTGTAGCTCCTGAAAGGCAAG < 41bp 0.707115412666383 0.496486151095246 0.8427144 0.74966574 prediction 0.414230825332766 Functional Loss - ISG20 ENSG00000172183 CDS Human protein_coding chr15:89195344 chr15:89195347 stopgain 1.000 0 24 hm5C_associated_SNPs_92355 0 0 0 2 89195332 89195355 mRNA hsa-miR-708 ISG20 miRanda miRanda
7429 chr11 31805082 31805082 1 + C T UCEC 31805079 + 31805059 31805099 41 ACCTGGACTTCTAGGGATTCCTCCTTAGTCGCTGCATGCAG ACCTGGACTTCTAGGGATTCCTCTTTAGTCGCTGCATGCAG < 41bp 0.758019488012205 0.550912709598727 0.17125309 0.03607753 prediction 0.414213556826957 Functional Loss - ELP4 ENSG00000109911 CDS Human protein_coding chr11:31805079 chr11:31805082 nonsynonymous SNV 0.439 1 24 hm5C_associated_SNPs_92362 0 0 1 1 31805078 31805101 mRNA hsa-miR-217 ELP4 miRanda miRanda
7430 chr17 8193159 8193159 1 + G A rs552055941 8193156 + 8193136 8193176 41 ACAACAGGTCATCTCTTGGCCCCGAAAATCTGTCACCTGCA ACAACAGGTCATCTCTTGGCCCCAAAAATCTGTCACCTGCA < 41bp 0.767736897847645 0.560631817738599 0.02224812 0.014011413 prediction 0.414210160218093 Functional Loss - RANGRF ENSG00000108961 CDS Human protein_coding chr17:8193156 chr17:8193159 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_92364 0 0 1 2 8193152 8193175 mRNA hsa-miR-125a-3p RANGRF miRanda miRanda
7431 chr17 8193159 8193159 1 + G A rs552055941 8193156 + 8193136 8193176 41 ACAACAGGTCATCTCTTGGCCCCGAAAATCTGTCACCTGCA ACAACAGGTCATCTCTTGGCCCCAAAAATCTGTCACCTGCA < 41bp 0.767736897847645 0.560631817738599 0.02224812 0.014011413 prediction 0.414210160218093 Functional Loss - RANGRF ENSG00000108961 CDS Human protein_coding chr17:8193156 chr17:8193159 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_92364 0 0 1 2 8193151 8193172 mRNA hsa-miR-542-3p RANGRF miRanda miRanda
7432 chr19 36729007 36729007 1 + G A rs112406709 36729004 + 36728984 36729024 41 AAACAACTGAGAAAGCCCATCACGAACAATATGGGAAATTC AAACAACTGAGAAAGCCCATCACAAACAATATGGGAAATTC < 41bp 0.714294165765143 0.507303380027587 0.25253808 0.20319739 prediction 0.413981571475112 Functional Loss - ZNF146 ENSG00000167635 UTR3 Human protein_coding chr19:36729004 chr19:36729007 . . 0 24 hm5C_associated_SNPs_92466 0 0 1 1 36728990 36729013 mRNA hsa-miR-375 ZNF146 miRanda miRanda
7433 chr2 105122720 105122720 1 + T C rs552589463 105122719 + 105122699 105122739 41 TCTAAGCCAGGTCTGACAGACTCCAAAGCAAGCCCTGTTTA TCTAAGCCAGGTCTGACAGACCCCAAAGCAAGCCCTGTTTA < 41bp 0.777569375207525 0.570629450476176 0.9545267 0.043664664 prediction 0.413879849462698 Functional Loss - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105122719 chr2:105122720 . . 0 22 hm5C_associated_SNPs_92519 0 0 0 6 105122718 105122741 mRNA hsa-miR-30a LOC150568 miRanda miRanda
7434 chr2 105122720 105122720 1 + T C rs552589463 105122719 + 105122699 105122739 41 TCTAAGCCAGGTCTGACAGACTCCAAAGCAAGCCCTGTTTA TCTAAGCCAGGTCTGACAGACCCCAAAGCAAGCCCTGTTTA < 41bp 0.777569375207525 0.570629450476176 0.9545267 0.043664664 prediction 0.413879849462698 Functional Loss - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105122719 chr2:105122720 . . 0 22 hm5C_associated_SNPs_92519 0 0 0 6 105122719 105122741 mRNA hsa-miR-30c LOC150568 miRanda miRanda
7435 chr2 105122720 105122720 1 + T C rs552589463 105122719 + 105122699 105122739 41 TCTAAGCCAGGTCTGACAGACTCCAAAGCAAGCCCTGTTTA TCTAAGCCAGGTCTGACAGACCCCAAAGCAAGCCCTGTTTA < 41bp 0.777569375207525 0.570629450476176 0.9545267 0.043664664 prediction 0.413879849462698 Functional Loss - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105122719 chr2:105122720 . . 0 22 hm5C_associated_SNPs_92519 0 0 0 6 105122720 105122741 mRNA hsa-miR-30d LOC150568 miRanda miRanda
7436 chr2 105122720 105122720 1 + T C rs552589463 105122719 + 105122699 105122739 41 TCTAAGCCAGGTCTGACAGACTCCAAAGCAAGCCCTGTTTA TCTAAGCCAGGTCTGACAGACCCCAAAGCAAGCCCTGTTTA < 41bp 0.777569375207525 0.570629450476176 0.9545267 0.043664664 prediction 0.413879849462698 Functional Loss - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105122719 chr2:105122720 . . 0 22 hm5C_associated_SNPs_92519 0 0 0 6 105122720 105122741 mRNA hsa-miR-30b LOC150568 miRanda miRanda
7437 chr2 105122720 105122720 1 + T C rs552589463 105122719 + 105122699 105122739 41 TCTAAGCCAGGTCTGACAGACTCCAAAGCAAGCCCTGTTTA TCTAAGCCAGGTCTGACAGACCCCAAAGCAAGCCCTGTTTA < 41bp 0.777569375207525 0.570629450476176 0.9545267 0.043664664 prediction 0.413879849462698 Functional Loss - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105122719 chr2:105122720 . . 0 22 hm5C_associated_SNPs_92519 0 0 0 6 105122712 105122735 mRNA hsa-miR-296-3p LOC150568 miRanda miRanda
7438 chr2 105122720 105122720 1 + T C rs552589463 105122719 + 105122699 105122739 41 TCTAAGCCAGGTCTGACAGACTCCAAAGCAAGCCCTGTTTA TCTAAGCCAGGTCTGACAGACCCCAAAGCAAGCCCTGTTTA < 41bp 0.777569375207525 0.570629450476176 0.9545267 0.043664664 prediction 0.413879849462698 Functional Loss - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105122719 chr2:105122720 . . 0 22 hm5C_associated_SNPs_92519 0 0 0 6 105122718 105122741 mRNA hsa-miR-30e LOC150568 miRanda miRanda
7439 chr7 44841016 44841016 1 + G A UCEC 44841013 + 44840993 44841033 41 CCATTGCTGACTGTGGACAACTCGAATAAGTTTGACTTGTG CCATTGCTGACTGTGGACAACTCAAATAAGTTTGACTTGTG < 41bp 0.755276664695136 0.54834737337678 0.90502155 0.9247793 prediction 0.413858582636712 Functional Loss - PPIA ENSG00000196262 CDS Human protein_coding chr7:44841013 chr7:44841016 nonsynonymous SNV 0.226 0 24 hm5C_associated_SNPs_92528 0 0 0 1 44840992 44841016 mRNA hsa-miR-219-5p PPIA miRanda miRanda
7440 chr17 52992080 52992080 1 + G A rs61739718 52992077 + 52992057 52992097 41 TCTGTAATTGCTCCAAAGAACTCGACTGTTACATTGGTCCC TCTGTAATTGCTCCAAAGAACTCAACTGTTACATTGGTCCC < 41bp 0.788457221741092 0.581530432024182 0.1460582 0.16583335 prediction 0.413853579433821 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52992077 chr17:52992080 synonymous SNV . 0 24 hm5C_associated_SNPs_92530 0 0 1 3 52992067 52992087 mRNA hsa-miR-212 TOM1L1 miRanda miRanda
7441 chr17 52992080 52992080 1 + G A rs61739718 52992077 + 52992057 52992097 41 TCTGTAATTGCTCCAAAGAACTCGACTGTTACATTGGTCCC TCTGTAATTGCTCCAAAGAACTCAACTGTTACATTGGTCCC < 41bp 0.788457221741092 0.581530432024182 0.1460582 0.16583335 prediction 0.413853579433821 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52992077 chr17:52992080 synonymous SNV . 0 24 hm5C_associated_SNPs_92530 0 0 1 3 52992066 52992087 mRNA hsa-miR-132 TOM1L1 miRanda miRanda
7442 chr17 52992080 52992080 1 + G A rs61739718 52992077 + 52992057 52992097 41 TCTGTAATTGCTCCAAAGAACTCGACTGTTACATTGGTCCC TCTGTAATTGCTCCAAAGAACTCAACTGTTACATTGGTCCC < 41bp 0.788457221741092 0.581530432024182 0.1460582 0.16583335 prediction 0.413853579433821 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52992077 chr17:52992080 synonymous SNV . 0 24 hm5C_associated_SNPs_92530 0 0 1 3 52992068 52992089 mRNA hsa-miR-194 TOM1L1 miRanda miRanda
7443 chr9 84533437 84533437 1 + G T UCEC 84533435 + 84533415 84533455 41 AGTGCCAGTAATAATGTTAACAGGCTTCAGGGCAGTGGAAA AGTGCCAGTAATAATGTTAACATGCTTCAGGGCAGTGGAAA < 41bp 0.706846265450717 0.404643628073782 0.34204048 0.12294793 prediction 0.413692530901433 Functional Loss - SPATA31D5P ENSG00000240632 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:84533435 chr9:84533437 . . 0 23 hm5C_associated_SNPs_92594 0 0 0 1 84533426 84533449 mRNA hsa-miR-874 FLJ43950 miRanda miRanda
7444 chr1 22148030 22148030 1 + G A SKCM 22148027 + 22148007 22148047 41 CTCCCCAGCTCTCGGGTCTGCAGGATCCCTCTGGATTGCAG CTCCCCAGCTCTCGGGTCTGCAGAATCCCTCTGGATTGCAG < 41bp 0.811473828823377 0.604686426355782 0.76939285 0.40296176 prediction 0.413574804935191 Functional Loss - LDLRAD2 ENSG00000187942 CDS Human protein_coding chr1:22148027 chr1:22148030 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_92658 0 0 0 1 22148029 22148051 mRNA hsa-miR-148a LDLRAD2 miRanda miRanda
7445 chr6 96997310 96997310 1 + G A UCEC 96997307 + 96997287 96997327 41 GACCTCTTAATAAAACTTATCTCGAGGTGGTACGTTCAGTA GACCTCTTAATAAAACTTATCTCAAGGTGGTACGTTCAGTA < 41bp 0.736713285565728 0.529994098997657 0.23738316 0.12397185 prediction 0.413438373136142 Functional Loss - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96997307 chr6:96997310 nonsynonymous SNV 0.895 1 24 hm5C_associated_SNPs_92729 0 0 1 3 96997310 96997330 mRNA hsa-miR-200b KIAA0776 miRanda miRanda
7446 chr6 96997310 96997310 1 + G A UCEC 96997307 + 96997287 96997327 41 GACCTCTTAATAAAACTTATCTCGAGGTGGTACGTTCAGTA GACCTCTTAATAAAACTTATCTCAAGGTGGTACGTTCAGTA < 41bp 0.736713285565728 0.529994098997657 0.23738316 0.12397185 prediction 0.413438373136142 Functional Loss - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96997307 chr6:96997310 nonsynonymous SNV 0.895 1 24 hm5C_associated_SNPs_92729 0 0 1 3 96997309 96997330 mRNA hsa-miR-200c KIAA0776 miRanda miRanda
7447 chr6 96997310 96997310 1 + G A UCEC 96997307 + 96997287 96997327 41 GACCTCTTAATAAAACTTATCTCGAGGTGGTACGTTCAGTA GACCTCTTAATAAAACTTATCTCAAGGTGGTACGTTCAGTA < 41bp 0.736713285565728 0.529994098997657 0.23738316 0.12397185 prediction 0.413438373136142 Functional Loss - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96997307 chr6:96997310 nonsynonymous SNV 0.895 1 24 hm5C_associated_SNPs_92729 0 0 1 3 96997310 96997330 mRNA hsa-miR-429 KIAA0776 miRanda miRanda
7448 chr17 42231990 42231990 1 + C T COAD 42231988 + 42231968 42232008 41 GGTGATGATCAAGTCCCTGACTCGGAGCACAATGGACGCCA GGTGATGATCAAGTCCCTGACTTGGAGCACAATGGACGCCA < 41bp 0.870073678486415 0.663381248371079 0.12052819 0.098783344 prediction 0.413384860230671 Functional Loss - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42231988 chr17:42231990 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_92763 0 0 1 1 42231984 42232010 mRNA hsa-miR-149 C17orf53 miRanda miRanda
7449 chr9 131847815 131847815 1 + C T UCEC 131847812 + 131847792 131847832 41 CGCAGAATGCACCAAACAAACAACGCCAGGTTCCTGGACTT CGCAGAATGCACCAAACAAACAATGCCAGGTTCCTGGACTT < 41bp 0.730081278263172 0.523395687254166 0.4081485 0.44391286 prediction 0.413371182018011 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847812 chr9:131847815 synonymous SNV . 0 24 hm5C_associated_SNPs_92773 0 0 1 1 131847803 131847824 mRNA hsa-miR-490-3p DOLPP1 miRanda miRanda
7450 chr1 205241040 205241040 1 + C T UCEC 205241038 + 205241018 205241058 41 GGGCGTGGAGAATGCCAACGCGCGGGCGCTGCTGGGCAAGT GGGCGTGGAGAATGCCAACGCGTGGGCGCTGCTGGGCAAGT < 41bp 0.823921985699698 0.617259400179155 0.34713903 0.31091395 prediction 0.413325171041086 Functional Loss - TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205241038 chr1:205241040 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_92792 0 0 0 1 205241029 205241051 mRNA hsa-miR-503 TMCC2 miRanda miRanda
7451 chr1 233807174 233807174 1 + G A rs147325030 233807171 + 233807151 233807191 41 CATGACCAACTGTCCTTCTCCTCGATCACAGACCAGGCAGC CATGACCAACTGTCCTTCTCCTCAATCACAGACCAGGCAGC < 41bp 0.800298472871169 0.593661863450972 0.26373115 0.08574149 prediction 0.413273218840394 Functional Loss - KCNK1 ENSG00000135750 CDS Human protein_coding chr1:233807171 chr1:233807174 synonymous SNV . 0 24 hm5C_associated_SNPs_92811 0 0 1 1 233807172 233807193 mRNA hsa-miR-22 KCNK1 miRanda miRanda
7452 chr19 41524203 41524203 1 + G C rs61365636 41524199 + 41524179 41524219 41 GCCCCCTTGGCCCAGGTTCCCTGAGCTGTGGGATTCTGCAC GCCCCCTTGGCCCAGGTTCCCTGACCTGTGGGATTCTGCAC < 41bp 0.810768559279309 0.604154274628033 0.25681138 0.20197585 prediction 0.413228569302553 Functional Loss - CYP2B6 ENSG00000197408 UTR3 Human protein_coding chr19:41524199 chr19:41524203 . . 0 25 hm5C_associated_SNPs_92837 0 0 0 3 41524198 41524222 mRNA hsa-miR-148a CYP2B6 miRanda miRanda
7453 chr19 41524203 41524203 1 + G C rs61365636 41524199 + 41524179 41524219 41 GCCCCCTTGGCCCAGGTTCCCTGAGCTGTGGGATTCTGCAC GCCCCCTTGGCCCAGGTTCCCTGACCTGTGGGATTCTGCAC < 41bp 0.810768559279309 0.604154274628033 0.25681138 0.20197585 prediction 0.413228569302553 Functional Loss - CYP2B6 ENSG00000197408 UTR3 Human protein_coding chr19:41524199 chr19:41524203 . . 0 25 hm5C_associated_SNPs_92837 0 0 0 3 41524199 41524222 mRNA hsa-miR-152 CYP2B6 miRanda miRanda
7454 chr19 41524203 41524203 1 + G C rs61365636 41524199 + 41524179 41524219 41 GCCCCCTTGGCCCAGGTTCCCTGAGCTGTGGGATTCTGCAC GCCCCCTTGGCCCAGGTTCCCTGACCTGTGGGATTCTGCAC < 41bp 0.810768559279309 0.604154274628033 0.25681138 0.20197585 prediction 0.413228569302553 Functional Loss - CYP2B6 ENSG00000197408 UTR3 Human protein_coding chr19:41524199 chr19:41524203 . . 0 25 hm5C_associated_SNPs_92837 0 0 0 3 41524198 41524222 mRNA hsa-miR-148b CYP2B6 miRanda miRanda
7455 chr6 17292047 17292047 1 + C T COAD 17292045 + 17292025 17292065 41 AGCCGGGAGTGGTCATTCCACACGTCCAGCCGACAGCAGCT AGCCGGGAGTGGTCATTCCACATGTCCAGCCGACAGCAGCT < 41bp 0.838858830141292 0.632270833677022 0.2089538 0.26916444 prediction 0.41317599292854 Functional Loss - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292045 chr6:17292047 synonymous SNV . 0 23 hm5C_associated_SNPs_92859 0 0 0 2 17292046 17292069 mRNA hsa-miR-34a RBM24 miRanda miRanda
7456 chr6 17292047 17292047 1 + C T COAD 17292045 + 17292025 17292065 41 AGCCGGGAGTGGTCATTCCACACGTCCAGCCGACAGCAGCT AGCCGGGAGTGGTCATTCCACATGTCCAGCCGACAGCAGCT < 41bp 0.838858830141292 0.632270833677022 0.2089538 0.26916444 prediction 0.41317599292854 Functional Loss - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292045 chr6:17292047 synonymous SNV . 0 23 hm5C_associated_SNPs_92859 0 0 0 2 17292046 17292069 mRNA hsa-miR-34c-5p RBM24 miRanda miRanda
7457 chr15 79614521 79614521 1 + G T UCEC 79614519 + 79614499 79614539 41 ACTGTTGAAAAGCTTCTTCACAGAAAAACGACCCATCAGCA ACTGTTGAAAAGCTTCTTCACATAAAAACGACCCATCAGCA < 41bp 0.706575011268039 0.360915850717077 0.7236837 0.41223028 prediction 0.413150022536077 Functional Loss - TMED3 ENSG00000166557 CDS Human protein_coding chr15:79614519 chr15:79614521 stopgain 0.782 1 23 hm5C_associated_SNPs_92869 0 0 1 1 79614519 79614542 mRNA hsa-miR-370 TMED3 miRanda miRanda
7458 chr19 55019157 55019157 1 + C T SKCM 55019155 + 55019135 55019175 41 GAGCCAGGCACTGTGATCTCCCCGGGGAGCCATGTGACTTT GAGCCAGGCACTGTGATCTCCCTGGGGAGCCATGTGACTTT < 41bp 0.824194473760421 0.617621583890349 0.88122725 0.19881397 prediction 0.413145779740143 Functional Loss - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019155 chr19:55019157 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_92872 0 0 0 1 55019157 55019175 mRNA hsa-miR-224 LAIR2 miRanda miRanda
7459 chr11 118886077 118886077 1 + G T SARC 118886073 + 118886053 118886093 41 GAGTTGGGGCCAACTTTGATCACAGCTCCAGGACCAGTGCA GAGTTGGGGCCAACTTTGATCACATCTCCAGGACCAGTGCA < 41bp 0.717827190698862 0.511255496794693 0.4175219 0.16721329 prediction 0.413143387808339 Functional Loss - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118886073 chr11:118886077 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_92874 0 0 1 2 118886059 118886082 mRNA hsa-miR-122 CCDC84 miRanda miRanda
7460 chr11 118886077 118886077 1 + G T SARC 118886073 + 118886053 118886093 41 GAGTTGGGGCCAACTTTGATCACAGCTCCAGGACCAGTGCA GAGTTGGGGCCAACTTTGATCACATCTCCAGGACCAGTGCA < 41bp 0.717827190698862 0.511255496794693 0.4175219 0.16721329 prediction 0.413143387808339 Functional Loss - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118886073 chr11:118886077 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_92874 0 0 1 2 118886064 118886084 mRNA hsa-miR-378 CCDC84 miRanda miRanda
7461 chr21 30566498 30566498 1 + G A rs61730440 30566495 + 30566475 30566515 41 CAATGACTATCTGGATGACACAGGAAGGATGCAATTCTGGC CAATGACTATCTGGATGACACAGAAAGGATGCAATTCTGGC < 41bp 0.732404155853642 0.52586869934978 0.23105356 0.16324633 prediction 0.413070913007724 Functional Loss - LINC00189 ENSG00000215533 ncRNA_exonic Human sense_overlapping chr21:30566495 chr21:30566498 . . 0 24 hm5C_associated_SNPs_92907 0 0 0 2 30566488 30566510 mRNA hsa-miR-25 NCRNA00189 miRanda miRanda
7462 chr21 30566498 30566498 1 + G A rs61730440 30566495 + 30566475 30566515 41 CAATGACTATCTGGATGACACAGGAAGGATGCAATTCTGGC CAATGACTATCTGGATGACACAGAAAGGATGCAATTCTGGC < 41bp 0.732404155853642 0.52586869934978 0.23105356 0.16324633 prediction 0.413070913007724 Functional Loss - LINC00189 ENSG00000215533 ncRNA_exonic Human sense_overlapping chr21:30566495 chr21:30566498 . . 0 24 hm5C_associated_SNPs_92907 0 0 0 2 30566488 30566510 mRNA hsa-miR-32 NCRNA00189 miRanda miRanda
7463 chr1 32697049 32697049 1 + G A rs189268974 32697046 + 32697026 32697066 41 AGGTTGCAGTGAGCTGAGATCACGTCATTGCACTCCATCCT AGGTTGCAGTGAGCTGAGATCACATCATTGCACTCCATCCT < 41bp 0.778906770770273 0.572386627406805 0.44150314 0.54322433 prediction 0.413040286726938 Functional Loss - EIF3I ENSG00000084623 UTR3 Human protein_coding chr1:32697046 chr1:32697049 . . 0 24 hm5C_associated_SNPs_92924 0 0 1 6 32697025 32697050 mRNA hsa-miR-187 EIF3I miRanda miRanda
7464 chr1 32697049 32697049 1 + G A rs189268974 32697046 + 32697026 32697066 41 AGGTTGCAGTGAGCTGAGATCACGTCATTGCACTCCATCCT AGGTTGCAGTGAGCTGAGATCACATCATTGCACTCCATCCT < 41bp 0.778906770770273 0.572386627406805 0.44150314 0.54322433 prediction 0.413040286726938 Functional Loss - EIF3I ENSG00000084623 UTR3 Human protein_coding chr1:32697046 chr1:32697049 . . 0 24 hm5C_associated_SNPs_92924 0 0 1 6 32697039 32697060 mRNA hsa-miR-130a EIF3I miRanda miRanda
7465 chr1 32697049 32697049 1 + G A rs189268974 32697046 + 32697026 32697066 41 AGGTTGCAGTGAGCTGAGATCACGTCATTGCACTCCATCCT AGGTTGCAGTGAGCTGAGATCACATCATTGCACTCCATCCT < 41bp 0.778906770770273 0.572386627406805 0.44150314 0.54322433 prediction 0.413040286726938 Functional Loss - EIF3I ENSG00000084623 UTR3 Human protein_coding chr1:32697046 chr1:32697049 . . 0 24 hm5C_associated_SNPs_92924 0 0 1 6 32697038 32697060 mRNA hsa-miR-301a EIF3I miRanda miRanda
7466 chr1 32697049 32697049 1 + G A rs189268974 32697046 + 32697026 32697066 41 AGGTTGCAGTGAGCTGAGATCACGTCATTGCACTCCATCCT AGGTTGCAGTGAGCTGAGATCACATCATTGCACTCCATCCT < 41bp 0.778906770770273 0.572386627406805 0.44150314 0.54322433 prediction 0.413040286726938 Functional Loss - EIF3I ENSG00000084623 UTR3 Human protein_coding chr1:32697046 chr1:32697049 . . 0 24 hm5C_associated_SNPs_92924 0 0 1 6 32697039 32697060 mRNA hsa-miR-130b EIF3I miRanda miRanda
7467 chr1 32697049 32697049 1 + G A rs189268974 32697046 + 32697026 32697066 41 AGGTTGCAGTGAGCTGAGATCACGTCATTGCACTCCATCCT AGGTTGCAGTGAGCTGAGATCACATCATTGCACTCCATCCT < 41bp 0.778906770770273 0.572386627406805 0.44150314 0.54322433 prediction 0.413040286726938 Functional Loss - EIF3I ENSG00000084623 UTR3 Human protein_coding chr1:32697046 chr1:32697049 . . 0 24 hm5C_associated_SNPs_92924 0 0 1 6 32697036 32697060 mRNA hsa-miR-454 EIF3I miRanda miRanda
7468 chr1 32697049 32697049 1 + G A rs189268974 32697046 + 32697026 32697066 41 AGGTTGCAGTGAGCTGAGATCACGTCATTGCACTCCATCCT AGGTTGCAGTGAGCTGAGATCACATCATTGCACTCCATCCT < 41bp 0.778906770770273 0.572386627406805 0.44150314 0.54322433 prediction 0.413040286726938 Functional Loss - EIF3I ENSG00000084623 UTR3 Human protein_coding chr1:32697046 chr1:32697049 . . 0 24 hm5C_associated_SNPs_92924 0 0 1 6 32697038 32697060 mRNA hsa-miR-301b EIF3I miRanda miRanda
7469 chr3 23963209 23963209 1 + G A rs372263565 23963206 + 23963186 23963226 41 CTCCCAAATAGCCAGGACTACAGGCGCACACTGCCATGCCC CTCCCAAATAGCCAGGACTACAGACGCACACTGCCATGCCC < 41bp 0.706509376381948 0.481290284909343 0.8164562 0.38541004 prediction 0.413018752763896 Functional Loss - RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963206 chr3:23963209 . . 0 24 hm5C_associated_SNPs_92934 0 0 0 4 23963193 23963221 mRNA hsa-miR-34a RPL15 miRanda miRanda
7470 chr3 23963209 23963209 1 + G A rs372263565 23963206 + 23963186 23963226 41 CTCCCAAATAGCCAGGACTACAGGCGCACACTGCCATGCCC CTCCCAAATAGCCAGGACTACAGACGCACACTGCCATGCCC < 41bp 0.706509376381948 0.481290284909343 0.8164562 0.38541004 prediction 0.413018752763896 Functional Loss - RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963206 chr3:23963209 . . 0 24 hm5C_associated_SNPs_92934 0 0 0 4 23963199 23963221 mRNA hsa-miR-34c-5p RPL15 miRanda miRanda
7471 chr3 23963209 23963209 1 + G A rs372263565 23963206 + 23963186 23963226 41 CTCCCAAATAGCCAGGACTACAGGCGCACACTGCCATGCCC CTCCCAAATAGCCAGGACTACAGACGCACACTGCCATGCCC < 41bp 0.706509376381948 0.481290284909343 0.8164562 0.38541004 prediction 0.413018752763896 Functional Loss - RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963206 chr3:23963209 . . 0 24 hm5C_associated_SNPs_92934 0 0 0 4 23963200 23963221 mRNA hsa-miR-449a RPL15 miRanda miRanda
7472 chr3 23963209 23963209 1 + G A rs372263565 23963206 + 23963186 23963226 41 CTCCCAAATAGCCAGGACTACAGGCGCACACTGCCATGCCC CTCCCAAATAGCCAGGACTACAGACGCACACTGCCATGCCC < 41bp 0.706509376381948 0.481290284909343 0.8164562 0.38541004 prediction 0.413018752763896 Functional Loss - RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963206 chr3:23963209 . . 0 24 hm5C_associated_SNPs_92934 0 0 0 4 23963200 23963221 mRNA hsa-miR-449b RPL15 miRanda miRanda
7473 chr4 1326630 1326630 1 + G A UCEC 1326627 + 1326607 1326647 41 TGGGCATGCTGGCCTTCCCGCCCGACACGCACATCTCCCCG TGGGCATGCTGGCCTTCCCGCCCAACACGCACATCTCCCCG < 41bp 0.819885071822566 0.613392643660329 0.026881576 0.03608212 prediction 0.412984856324475 Functional Loss - MAEA ENSG00000090316 CDS Human protein_coding chr4:1326627 chr4:1326630 nonsynonymous SNV 0.856 1 24 hm5C_associated_SNPs_92948 0 0 0 1 1326620 1326640 mRNA hsa-miR-210 MAEA miRanda miRanda
7474 chr1 100757691 100757691 1 + G A rs562826373 100757688 + 100757668 100757708 41 GTTTCACCATATTGGTCAGGCTGGTTTCGAACTCCTGACCT GTTTCACCATATTGGTCAGGCTGATTTCGAACTCCTGACCT < 41bp 0.772055369114882 0.565563975970303 0.08399242 0.053679734 prediction 0.412982786289157 Functional Loss - RTCA ENSG00000137996 UTR3 Human protein_coding chr1:100757688 chr1:100757691 . . 0 24 hm5C_associated_SNPs_92950 0 0 0 7 100757688 100757710 mRNA hsa-let-7a RTCD1 miRanda miRanda
7475 chr1 100757691 100757691 1 + G A rs562826373 100757688 + 100757668 100757708 41 GTTTCACCATATTGGTCAGGCTGGTTTCGAACTCCTGACCT GTTTCACCATATTGGTCAGGCTGATTTCGAACTCCTGACCT < 41bp 0.772055369114882 0.565563975970303 0.08399242 0.053679734 prediction 0.412982786289157 Functional Loss - RTCA ENSG00000137996 UTR3 Human protein_coding chr1:100757688 chr1:100757691 . . 0 24 hm5C_associated_SNPs_92950 0 0 0 7 100757688 100757710 mRNA hsa-let-7c RTCD1 miRanda miRanda
7476 chr1 100757691 100757691 1 + G A rs562826373 100757688 + 100757668 100757708 41 GTTTCACCATATTGGTCAGGCTGGTTTCGAACTCCTGACCT GTTTCACCATATTGGTCAGGCTGATTTCGAACTCCTGACCT < 41bp 0.772055369114882 0.565563975970303 0.08399242 0.053679734 prediction 0.412982786289157 Functional Loss - RTCA ENSG00000137996 UTR3 Human protein_coding chr1:100757688 chr1:100757691 . . 0 24 hm5C_associated_SNPs_92950 0 0 0 7 100757688 100757710 mRNA hsa-let-7d RTCD1 miRanda miRanda
7477 chr1 100757691 100757691 1 + G A rs562826373 100757688 + 100757668 100757708 41 GTTTCACCATATTGGTCAGGCTGGTTTCGAACTCCTGACCT GTTTCACCATATTGGTCAGGCTGATTTCGAACTCCTGACCT < 41bp 0.772055369114882 0.565563975970303 0.08399242 0.053679734 prediction 0.412982786289157 Functional Loss - RTCA ENSG00000137996 UTR3 Human protein_coding chr1:100757688 chr1:100757691 . . 0 24 hm5C_associated_SNPs_92950 0 0 0 7 100757688 100757710 mRNA hsa-let-7e RTCD1 miRanda miRanda
7478 chr1 100757691 100757691 1 + G A rs562826373 100757688 + 100757668 100757708 41 GTTTCACCATATTGGTCAGGCTGGTTTCGAACTCCTGACCT GTTTCACCATATTGGTCAGGCTGATTTCGAACTCCTGACCT < 41bp 0.772055369114882 0.565563975970303 0.08399242 0.053679734 prediction 0.412982786289157 Functional Loss - RTCA ENSG00000137996 UTR3 Human protein_coding chr1:100757688 chr1:100757691 . . 0 24 hm5C_associated_SNPs_92950 0 0 0 7 100757688 100757710 mRNA hsa-let-7f RTCD1 miRanda miRanda
7479 chr1 100757691 100757691 1 + G A rs562826373 100757688 + 100757668 100757708 41 GTTTCACCATATTGGTCAGGCTGGTTTCGAACTCCTGACCT GTTTCACCATATTGGTCAGGCTGATTTCGAACTCCTGACCT < 41bp 0.772055369114882 0.565563975970303 0.08399242 0.053679734 prediction 0.412982786289157 Functional Loss - RTCA ENSG00000137996 UTR3 Human protein_coding chr1:100757688 chr1:100757691 . . 0 24 hm5C_associated_SNPs_92950 0 0 0 7 100757686 100757710 mRNA hsa-let-7g RTCD1 miRanda miRanda
7480 chr1 100757691 100757691 1 + G A rs562826373 100757688 + 100757668 100757708 41 GTTTCACCATATTGGTCAGGCTGGTTTCGAACTCCTGACCT GTTTCACCATATTGGTCAGGCTGATTTCGAACTCCTGACCT < 41bp 0.772055369114882 0.565563975970303 0.08399242 0.053679734 prediction 0.412982786289157 Functional Loss - RTCA ENSG00000137996 UTR3 Human protein_coding chr1:100757688 chr1:100757691 . . 0 24 hm5C_associated_SNPs_92950 0 0 0 7 100757688 100757710 mRNA hsa-let-7i RTCD1 miRanda miRanda
7481 chr19 49464139 49464139 1 + C T UCEC 49464136 + 49464116 49464156 41 CATTGGACTTCCTCCGGGAGCGGCTGTTGGGCTGGATCCAA CATTGGACTTCCTCCGGGAGCGGTTGTTGGGCTGGATCCAA < 41bp 0.710575123057252 0.504131177785016 0.5111776 0.5464978 prediction 0.412887890544471 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49464136 chr19:49464139 synonymous SNV . 0 24 hm5C_associated_SNPs_92988 0 0 1 2 49464136 49464157 mRNA hsa-miR-133a BAX miRanda miRanda
7482 chr19 49464139 49464139 1 + C T UCEC 49464136 + 49464116 49464156 41 CATTGGACTTCCTCCGGGAGCGGCTGTTGGGCTGGATCCAA CATTGGACTTCCTCCGGGAGCGGTTGTTGGGCTGGATCCAA < 41bp 0.710575123057252 0.504131177785016 0.5111776 0.5464978 prediction 0.412887890544471 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49464136 chr19:49464139 synonymous SNV . 0 24 hm5C_associated_SNPs_92988 0 0 1 2 49464136 49464157 mRNA hsa-miR-133b BAX miRanda miRanda
7483 chr7 128315858 128315858 1 + G T ACC 128315854 + 128315834 128315874 41 ATGGCCAATGTTACCTGGCCCCAGGGTCCATTTACCACCTG ATGGCCAATGTTACCTGGCCCCAGTGTCCATTTACCACCTG < 41bp 0.706428246108216 0.488410614050393 0.3494085 0.025902689 prediction 0.412856492216431 Functional Loss - FAM71F2 ENSG00000205085 CDS Human protein_coding chr7:128315854 chr7:128315858 nonsynonymous SNV 0.124 2 25 hm5C_associated_SNPs_92997 0 0 0 1 128315841 128315862 mRNA hsa-miR-504 FAM71F2 miRanda miRanda
7484 chr17 29222025 29222025 1 + C T rs189060490 29222023 + 29222003 29222043 41 CTTCATGGAAAAGTATATTTCTCGATGTACATTTTAAACAA CTTCATGGAAAAGTATATTTCTTGATGTACATTTTAAACAA < 41bp 0.831597631568943 0.625197400115275 0.6065776 0.07144073 prediction 0.412800462907336 Functional Loss - ATAD5 ENSG00000176208 UTR3 Human protein_coding chr17:29222023 chr17:29222025 . . 0 23 hm5C_associated_SNPs_93025 0 0 1 1 29222006 29222026 mRNA hsa-miR-539 ATAD5 miRanda miRanda
7485 chr2 121050795 121050795 1 + A C SKCM 121050791 + 121050771 121050811 41 GACAAGAATGGCAAGAAAAGCAGCAAGAACAAGAAAAGTTT GACAAGAATGGCAAGAAAAGCAGCCAGAACAAGAAAAGTTT < 41bp 0.706284665939839 0.314264534163264 0.5440401 0.45903698 prediction 0.412569331879678 Functional Loss - RALB ENSG00000144118 CDS Human protein_coding chr2:121050791 chr2:121050795 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_93146 0 0 0 3 121050776 121050796 mRNA hsa-miR-218 RALB miRanda miRanda
7486 chr2 121050795 121050795 1 + A C SKCM 121050791 + 121050771 121050811 41 GACAAGAATGGCAAGAAAAGCAGCAAGAACAAGAAAAGTTT GACAAGAATGGCAAGAAAAGCAGCCAGAACAAGAAAAGTTT < 41bp 0.706284665939839 0.314264534163264 0.5440401 0.45903698 prediction 0.412569331879678 Functional Loss - RALB ENSG00000144118 CDS Human protein_coding chr2:121050791 chr2:121050795 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_93146 0 0 0 3 121050782 121050803 mRNA hsa-miR-375 RALB miRanda miRanda
7487 chr2 121050795 121050795 1 + A C SKCM 121050791 + 121050771 121050811 41 GACAAGAATGGCAAGAAAAGCAGCAAGAACAAGAAAAGTTT GACAAGAATGGCAAGAAAAGCAGCCAGAACAAGAAAAGTTT < 41bp 0.706284665939839 0.314264534163264 0.5440401 0.45903698 prediction 0.412569331879678 Functional Loss - RALB ENSG00000144118 CDS Human protein_coding chr2:121050791 chr2:121050795 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_93146 0 0 0 3 121050780 121050800 mRNA hsa-miR-431 RALB miRanda miRanda
7488 chr11 105804542 105804542 1 + G A COAD 105804539 + 105804519 105804559 41 GACTACAGCTGAGGGAGTAGCTCGTGTCCGCAAATCCAAGG GACTACAGCTGAGGGAGTAGCTCATGTCCGCAAATCCAAGG < 41bp 0.706281911172605 0.479210514299946 0.12405181 0.1457926 prediction 0.412563822345209 Functional Loss - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105804539 chr11:105804542 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_93151 0 0 0 1 105804542 105804563 mRNA hsa-miR-874 GRIA4 miRanda miRanda
7489 chr10 99512851 99512851 1 + C T GBM 99512848 + 99512828 99512868 41 GATGAGCTGGCCCTGCAGGACAACGGGTTCCTGAGCAAGAA GATGAGCTGGCCCTGCAGGACAATGGGTTCCTGAGCAAGAA < 41bp 0.720672571422056 0.514407724273341 0.6352003 0.6865603 prediction 0.412529694297429 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99512848 chr10:99512851 synonymous SNV . 0 24 hm5C_associated_SNPs_93163 0 0 1 2 99512828 99512855 mRNA hsa-miR-339-5p ZFYVE27 miRanda miRanda
7490 chr10 99512851 99512851 1 + C T GBM 99512848 + 99512828 99512868 41 GATGAGCTGGCCCTGCAGGACAACGGGTTCCTGAGCAAGAA GATGAGCTGGCCCTGCAGGACAATGGGTTCCTGAGCAAGAA < 41bp 0.720672571422056 0.514407724273341 0.6352003 0.6865603 prediction 0.412529694297429 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99512848 chr10:99512851 synonymous SNV . 0 24 hm5C_associated_SNPs_93163 0 0 1 2 99512842 99512861 mRNA hsa-miR-873 ZFYVE27 miRanda miRanda
7491 chr16 29124377 29124377 1 + T C rs557480482 29124376 + 29124356 29124396 41 TGTCACTGATTTCAGTTGTTCTGGAGAATCATGTAGCGACA TGTCACTGATTTCAGTTGTTCCGGAGAATCATGTAGCGACA < 41bp 0.790960323183948 0.584697145985904 0.38029966 0.787538 prediction 0.412526354396088 Functional Loss - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29124376 chr16:29124377 . . 0 22 hm5C_associated_SNPs_93166 0 0 0 2 29124371 29124393 mRNA hsa-miR-221 RRN3P2 miRanda miRanda
7492 chr16 29124377 29124377 1 + T C rs557480482 29124376 + 29124356 29124396 41 TGTCACTGATTTCAGTTGTTCTGGAGAATCATGTAGCGACA TGTCACTGATTTCAGTTGTTCCGGAGAATCATGTAGCGACA < 41bp 0.790960323183948 0.584697145985904 0.38029966 0.787538 prediction 0.412526354396088 Functional Loss - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29124376 chr16:29124377 . . 0 22 hm5C_associated_SNPs_93166 0 0 0 2 29124373 29124393 mRNA hsa-miR-222 RRN3P2 miRanda miRanda
7493 chr16 21968870 21968870 1 + C T UCEC 21968867 + 21968847 21968887 41 ATTTAGGAACCACCCATTTGCTGCGTCTTACATCCAGTCTG ATTTAGGAACCACCCATTTGCTGTGTCTTACATCCAGTCTG < 41bp 0.706241260116411 0.49938219443987 0.07540935 0.08368823 prediction 0.412482520232822 Functional Loss - UQCRC2 ENSG00000140740 CDS Human protein_coding chr16:21968867 chr16:21968870 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_93184 0 0 1 2 21968855 21968877 mRNA hsa-miR-208a UQCRC2 miRanda miRanda
7494 chr16 21968870 21968870 1 + C T UCEC 21968867 + 21968847 21968887 41 ATTTAGGAACCACCCATTTGCTGCGTCTTACATCCAGTCTG ATTTAGGAACCACCCATTTGCTGTGTCTTACATCCAGTCTG < 41bp 0.706241260116411 0.49938219443987 0.07540935 0.08368823 prediction 0.412482520232822 Functional Loss - UQCRC2 ENSG00000140740 CDS Human protein_coding chr16:21968867 chr16:21968870 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_93184 0 0 1 2 21968855 21968877 mRNA hsa-miR-208b UQCRC2 miRanda miRanda
7495 chr1 148932910 148932910 1 + C T SKCM 148932907 + 148932887 148932927 41 GGCTCAGTCTGCGGCCAAGACTCCGTCCTGCAAGGTAAGGT GGCTCAGTCTGCGGCCAAGACTCTGTCCTGCAAGGTAAGGT < 41bp 0.732262784507453 0.526031127826474 0.21425274 0.07077852 prediction 0.412463313361957 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932907 chr1:148932910 . . 0 24 hm5C_associated_SNPs_93193 0 0 0 2 148932894 148932915 mRNA hsa-miR-184 LOC645166 miRanda miRanda
7496 chr1 148932910 148932910 1 + C T SKCM 148932907 + 148932887 148932927 41 GGCTCAGTCTGCGGCCAAGACTCCGTCCTGCAAGGTAAGGT GGCTCAGTCTGCGGCCAAGACTCTGTCCTGCAAGGTAAGGT < 41bp 0.732262784507453 0.526031127826474 0.21425274 0.07077852 prediction 0.412463313361957 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932907 chr1:148932910 . . 0 24 hm5C_associated_SNPs_93193 0 0 0 2 148932903 148932920 mRNA hsa-miR-431 LOC645166 miRanda miRanda
7497 chr10 33134532 33134532 1 + G A BLCA 33134529 + 33134509 33134549 41 GGTCTAATGAAGGAGTCAACCACGACACAATTAAAAAGTCA GGTCTAATGAAGGAGTCAACCACAACACAATTAAAAAGTCA < 41bp 0.749292644912431 0.543070765298423 0.22205779 0.36106884 prediction 0.412443759228016 Functional Loss - CCDC7 ENSG00000150076 CDS Human other chr10:33134529 chr10:33134532 synonymous SNV . 0 24 hm5C_associated_SNPs_93203 0 0 0 1 33134518 33134539 mRNA hsa-miR-599 C10orf68 miRanda miRanda
7498 chr8 23113998 23113998 1 + G A UCEC 23113995 + 23113975 23114015 41 TGTGAAGTTTGCCCGAGGGCCACGTGCCAAGGTCTCTCCAG TGTGAAGTTTGCCCGAGGGCCACATGCCAAGGTCTCTCCAG < 41bp 0.706205455718683 0.454307922036797 0.1812836 0.08918545 prediction 0.412410911437365 Functional Loss - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23113995 chr8:23113998 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_93219 0 0 0 3 23113982 23114005 mRNA hsa-miR-96 CHMP7 miRanda miRanda
7499 chr8 23113998 23113998 1 + G A UCEC 23113995 + 23113975 23114015 41 TGTGAAGTTTGCCCGAGGGCCACGTGCCAAGGTCTCTCCAG TGTGAAGTTTGCCCGAGGGCCACATGCCAAGGTCTCTCCAG < 41bp 0.706205455718683 0.454307922036797 0.1812836 0.08918545 prediction 0.412410911437365 Functional Loss - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23113995 chr8:23113998 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_93219 0 0 0 3 23113988 23114014 mRNA hsa-miR-185 CHMP7 miRanda miRanda
7500 chr8 23113998 23113998 1 + G A UCEC 23113995 + 23113975 23114015 41 TGTGAAGTTTGCCCGAGGGCCACGTGCCAAGGTCTCTCCAG TGTGAAGTTTGCCCGAGGGCCACATGCCAAGGTCTCTCCAG < 41bp 0.706205455718683 0.454307922036797 0.1812836 0.08918545 prediction 0.412410911437365 Functional Loss - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23113995 chr8:23113998 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_93219 0 0 0 3 23113984 23114005 mRNA hsa-miR-1271 CHMP7 miRanda miRanda
7501 chr2 226516205 226516205 1 + C T LUSC 226516202 + 226516182 226516222 41 GTCGACGTCAGGTGTGCCTCCTCCATCAGTCACTCCCCTCA GTCGACGTCAGGTGTGCCTCCTCTATCAGTCACTCCCCTCA < 41bp 0.769034135112937 0.56286800828251 0.9510297 0.93413436 prediction 0.412332253660855 Functional Loss - NYAP2 ENSG00000144460 CDS Human protein_coding chr2:226516202 chr2:226516205 nonsynonymous SNV 0.484 3 24 hm5C_associated_SNPs_93248 0 0 0 1 226516194 226516215 mRNA hsa-miR-134 KIAA1486 miRanda miRanda
7502 chr22 41924576 41924576 1 - G A UCEC 41924579 - 41924559 41924599 41 CATTCTGTTGAGGGCACTGCCAGCGCGGAACCACTCAATCT CATTCTGTTGAGGGCACTGCCAGTGCGGAACCACTCAATCT < 41bp 0.71522160637571 0.509121047605974 0.7649728 0.62797916 prediction 0.412201117539472 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41924579 chr22:41924576 nonsynonymous SNV 0.966 3 24 hm5C_associated_SNPs_93305 0 0 1 1 41924564 41924585 mRNA hsa-miR-140-5p POLR3H miRanda miRanda
7503 chr11 607297 607297 1 + G A BLCA 607294 + 607274 607314 41 AGCCCCTGGGGCGGTTCAGGCTCGGAACTTGTCAAATGGGA AGCCCCTGGGGCGGTTCAGGCTCAGAACTTGTCAAATGGGA < 41bp 0.706086349596575 0.455845535016199 0.28438157 0.21957403 prediction 0.412172699193151 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:607294 chr11:607297 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_93314 0 0 1 1 607278 607299 mRNA hsa-miR-615-3p PHRF1 miRanda miRanda
7504 chr9 68414033 68414033 1 + T C rs4928850 68414032 + 68414012 68414052 41 TGAACACAAAGCCCCGCATGCTCGGGCAGGTTGGGAGAGTC TGAACACAAAGCCCCGCATGCCCGGGCAGGTTGGGAGAGTC < 41bp 0.760147060219839 0.554062820817923 0.2185235 0.18966806 prediction 0.41216847880383 Functional Loss - LINC00537 ENSG00000232815 ncRNA_exonic Human unprocessed_pseudogene chr9:68414032 chr9:68414033 . . 0 22 hm5C_associated_SNPs_93316 0 0 0 1 68414030 68414049 mRNA hsa-miR-150 LOC203274 miRanda miRanda
7505 chr10 91597321 91597321 1 + G A rs140277051 91597318 + 91597298 91597338 41 TCCGCCTCAAGGGCAGGGAGCGCGGCTGGGTCTCTGGAAAG TCCGCCTCAAGGGCAGGGAGCGCAGCTGGGTCTCTGGAAAG < 41bp 0.808405697683984 0.602337125065071 0.89277434 0.7011715 prediction 0.412137145237826 Functional Loss - LINC00865 ENSG00000232229 ncRNA_exonic Human lincRNA chr10:91597318 chr10:91597321 . . 0 24 hm5C_associated_SNPs_93329 0 0 0 2 91597321 91597343 mRNA hsa-miR-135a LOC643529 miRanda miRanda
7506 chr10 91597321 91597321 1 + G A rs140277051 91597318 + 91597298 91597338 41 TCCGCCTCAAGGGCAGGGAGCGCGGCTGGGTCTCTGGAAAG TCCGCCTCAAGGGCAGGGAGCGCAGCTGGGTCTCTGGAAAG < 41bp 0.808405697683984 0.602337125065071 0.89277434 0.7011715 prediction 0.412137145237826 Functional Loss - LINC00865 ENSG00000232229 ncRNA_exonic Human lincRNA chr10:91597318 chr10:91597321 . . 0 24 hm5C_associated_SNPs_93329 0 0 0 2 91597321 91597343 mRNA hsa-miR-135b LOC643529 miRanda miRanda
7507 chr1 156348149 156348149 1 + G T THYM 156348145 + 156348125 156348165 41 CCCAGCTGGAGAAGAGCAAGCACCGCCAGGGCTCCGTCTAC CCCAGCTGGAGAAGAGCAAGCACCTCCAGGGCTCCGTCTAC < 41bp 0.713170457271094 0.507106182291616 0.027869552 0.04356724 prediction 0.412128549958956 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156348145 chr1:156348149 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_93333 0 0 1 1 156348147 156348167 mRNA hsa-miR-379 RHBG miRanda miRanda
7508 chr9 43816743 43816743 1 + G T LUAD 43816739 + 43816719 43816759 41 CCTCATCGAGCTCCTCGACACGCAGGTCAACTTCACCGTGG CCTCATCGAGCTCCTCGACACGCATGTCAACTTCACCGTGG < 41bp 0.71467175499593 0.508618852183531 0.113131434 0.041511714 prediction 0.412105805624798 Functional Loss - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43816739 chr9:43816743 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_93343 0 0 0 1 43816735 43816759 mRNA hsa-miR-125a-3p CNTNAP3B miRanda miRanda
7509 chr13 42763196 42763196 1 + G A UCEC 42763193 + 42763173 42763213 41 GTTCAGTCCTAAACGAGAAGCTCGAACAACTGCTGCAGGCT GTTCAGTCCTAAACGAGAAGCTCAAACAACTGCTGCAGGCT < 41bp 0.706036772379404 0.468854488917134 0.8380822 0.89469755 prediction 0.412073544758808 Functional Loss - DGKH ENSG00000102780 CDS Human protein_coding chr13:42763193 chr13:42763196 nonsynonymous SNV 0.974 1 24 hm5C_associated_SNPs_93351 0 0 1 2 42763187 42763209 mRNA hsa-miR-103 DGKH miRanda miRanda
7510 chr13 42763196 42763196 1 + G A UCEC 42763193 + 42763173 42763213 41 GTTCAGTCCTAAACGAGAAGCTCGAACAACTGCTGCAGGCT GTTCAGTCCTAAACGAGAAGCTCAAACAACTGCTGCAGGCT < 41bp 0.706036772379404 0.468854488917134 0.8380822 0.89469755 prediction 0.412073544758808 Functional Loss - DGKH ENSG00000102780 CDS Human protein_coding chr13:42763193 chr13:42763196 nonsynonymous SNV 0.974 1 24 hm5C_associated_SNPs_93351 0 0 1 2 42763187 42763209 mRNA hsa-miR-107 DGKH miRanda miRanda
7511 chr19 54634882 54634882 1 + G A rs116685547 54634879 + 54634859 54634899 41 CCTGAATGACTGCGTGTGTCCAAGGTGGCTTCCCACTGAAG CCTGAATGACTGCGTGTGTCCAAAGTGGCTTCCCACTGAAG < 41bp 0.821093627862378 0.615126507257023 0.90543264 0.69491273 prediction 0.411934241210711 Functional Loss - PRPF31 ENSG00000105618 UTR3 Human protein_coding chr19:54634879 chr19:54634882 . . 0 24 hm5C_associated_SNPs_93408 1 0 1 1 54634857 54634882 mRNA hsa-miR-96 PRPF31 miRanda miRanda
7512 chr11 65272755 65272755 1 + G T HNSC 65272752 + 65272732 65272772 41 AAGCGCTATTATCCTAAGGTCAAGAGAAGTGTCAGCCTCAC AAGCGCTATTATCCTAAGGTCAATAGAAGTGTCAGCCTCAC < 41bp 0.705952338276907 0.405637098951229 0.8185395 0.34802735 prediction 0.411904676553813 Functional Loss - MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65272752 chr11:65272755 . . 0 24 hm5C_associated_SNPs_93426 0 0 1 3 65272750 65272771 lncRNA hsa-miR-485-5p MALAT1 miRanda starBase2
7513 chr11 65272755 65272755 1 + G T HNSC 65272752 + 65272732 65272772 41 AAGCGCTATTATCCTAAGGTCAAGAGAAGTGTCAGCCTCAC AAGCGCTATTATCCTAAGGTCAATAGAAGTGTCAGCCTCAC < 41bp 0.705952338276907 0.405637098951229 0.8185395 0.34802735 prediction 0.411904676553813 Functional Loss - MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65272752 chr11:65272755 . . 0 24 hm5C_associated_SNPs_93426 0 0 1 3 65272750 65272771 lncRNA hsa-miR-6884-5p MALAT1 miRanda starBase2
7514 chr11 65272755 65272755 1 + G T HNSC 65272752 + 65272732 65272772 41 AAGCGCTATTATCCTAAGGTCAAGAGAAGTGTCAGCCTCAC AAGCGCTATTATCCTAAGGTCAATAGAAGTGTCAGCCTCAC < 41bp 0.705952338276907 0.405637098951229 0.8185395 0.34802735 prediction 0.411904676553813 Functional Loss - MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65272752 chr11:65272755 . . 0 24 hm5C_associated_SNPs_93426 0 0 1 3 65272738 65272761 lncRNA hsa-miR-942-5p MALAT1 miRanda starBase2
7515 chr7 44079264 44079264 1 + T C rs561383481 44079263 + 44079243 44079283 41 TTGCCCACGTTCTGGACTGCCTGGAGGTGACAGCAGGAAGG TTGCCCACGTTCTGGACTGCCCGGAGGTGACAGCAGGAAGG < 41bp 0.756140884499436 0.550191226867575 0.43604872 0.77539253 prediction 0.411899315263721 Functional Loss - RASA4CP ENSG00000235314;ENSG00000228903 ncRNA_exonic;splicing Human other chr7:44079263 chr7:44079264 . . 0 22 hm5C_associated_SNPs_93429 0 0 0 1 44079259 44079280 mRNA hsa-miR-370 FLJ35390 miRanda miRanda
7516 chr3 9969873 9969873 1 + C T SKCM 9969870 + 9969850 9969890 41 GTGTGGCCTCTGGAACCTGACTCCGTTAGGACGAACATCTG GTGTGGCCTCTGGAACCTGACTCTGTTAGGACGAACATCTG < 41bp 0.748789283887733 0.54290717950389 0.18113539 0.09722015 prediction 0.411764208767687 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9969870 chr3:9969873 synonymous SNV . 0 24 hm5C_associated_SNPs_93484 0 0 1 2 9969870 9969893 mRNA hsa-miR-449a IL17RC miRanda miRanda
7517 chr3 9969873 9969873 1 + C T SKCM 9969870 + 9969850 9969890 41 GTGTGGCCTCTGGAACCTGACTCCGTTAGGACGAACATCTG GTGTGGCCTCTGGAACCTGACTCTGTTAGGACGAACATCTG < 41bp 0.748789283887733 0.54290717950389 0.18113539 0.09722015 prediction 0.411764208767687 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9969870 chr3:9969873 synonymous SNV . 0 24 hm5C_associated_SNPs_93484 0 0 1 2 9969870 9969893 mRNA hsa-miR-449b IL17RC miRanda miRanda
7518 chr1 229431640 229431640 1 + C T GBM 229431638 + 229431618 229431658 41 GAGGCGCGGCCGGGGCTCTCCTCGTCTATGATATCACCAGG GAGGCGCGGCCGGGGCTCTCCTTGTCTATGATATCACCAGG < 41bp 0.868836263818207 0.662957979429836 0.40023527 0.15866885 prediction 0.411756568776741 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431638 chr1:229431640 synonymous SNV . 0 23 hm5C_associated_SNPs_93490 0 0 1 3 229431639 229431657 mRNA hsa-miR-138 RAB4A miRanda miRanda
7519 chr1 229431640 229431640 1 + C T GBM 229431638 + 229431618 229431658 41 GAGGCGCGGCCGGGGCTCTCCTCGTCTATGATATCACCAGG GAGGCGCGGCCGGGGCTCTCCTTGTCTATGATATCACCAGG < 41bp 0.868836263818207 0.662957979429836 0.40023527 0.15866885 prediction 0.411756568776741 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431638 chr1:229431640 synonymous SNV . 0 23 hm5C_associated_SNPs_93490 0 0 1 3 229431627 229431649 mRNA hsa-miR-376a RAB4A miRanda miRanda
7520 chr1 229431640 229431640 1 + C T GBM 229431638 + 229431618 229431658 41 GAGGCGCGGCCGGGGCTCTCCTCGTCTATGATATCACCAGG GAGGCGCGGCCGGGGCTCTCCTTGTCTATGATATCACCAGG < 41bp 0.868836263818207 0.662957979429836 0.40023527 0.15866885 prediction 0.411756568776741 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431638 chr1:229431640 synonymous SNV . 0 23 hm5C_associated_SNPs_93490 0 0 1 3 229431626 229431649 mRNA hsa-miR-376b RAB4A miRanda miRanda
7521 chr16 23768908 23768908 1 + C T rs16972893 23768905 + 23768885 23768925 41 GCATCCGGATCCTGAAGTGACTCCGTTTGTGCCTTGGGCTT GCATCCGGATCCTGAAGTGACTCTGTTTGTGCCTTGGGCTT < 41bp 0.705816215994229 0.499792100781596 0.2137593 0.06122145 prediction 0.411632431988457 Functional Loss - CHP2 ENSG00000166869 UTR3 Human protein_coding chr16:23768905 chr16:23768908 . . 0 24 hm5C_associated_SNPs_93537 0 0 0 2 23768905 23768920 mRNA hsa-miR-124 CHP2 miRanda miRanda
7522 chr16 23768908 23768908 1 + C T rs16972893 23768905 + 23768885 23768925 41 GCATCCGGATCCTGAAGTGACTCCGTTTGTGCCTTGGGCTT GCATCCGGATCCTGAAGTGACTCTGTTTGTGCCTTGGGCTT < 41bp 0.705816215994229 0.499792100781596 0.2137593 0.06122145 prediction 0.411632431988457 Functional Loss - CHP2 ENSG00000166869 UTR3 Human protein_coding chr16:23768905 chr16:23768908 . . 0 24 hm5C_associated_SNPs_93537 0 0 0 2 23768905 23768920 mRNA hsa-miR-506 CHP2 miRanda miRanda
7523 chr1 179521770 179521770 1 + C T SKCM 179521768 + 179521748 179521788 41 GCTTGTCTTTGCGCTTCAGCCTCCACAGCCAGTGAGTGCTG GCTTGTCTTTGCGCTTCAGCCTTCACAGCCAGTGAGTGCTG < 41bp 0.70581476699923 0.42747076940163 0.9548353 0.12455851 prediction 0.411629533998461 Functional Loss - NPHS2 ENSG00000116218 CDS Human protein_coding chr1:179521768 chr1:179521770 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_93540 0 0 0 1 179521749 179521771 mRNA hsa-miR-485-5p C1orf125 miRanda miRanda
7524 chr7 151716859 151716859 1 + G T HNSC 151716855 + 151716835 151716875 41 GTATTTGGATAATGTCTTCCCAGAGTTGGAGGCATCTGTGA GTATTTGGATAATGTCTTCCCAGATTTGGAGGCATCTGTGA < 41bp 0.72869598933054 0.522893950798584 0.69213676 0.42128047 prediction 0.411604077063912 Functional Loss - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151716855 chr7:151716859 nonsynonymous SNV 0.802 4 25 hm5C_associated_SNPs_93557 0 0 0 4 151716854 151716876 mRNA hsa-miR-27a GALNTL5 miRanda miRanda
7525 chr7 151716859 151716859 1 + G T HNSC 151716855 + 151716835 151716875 41 GTATTTGGATAATGTCTTCCCAGAGTTGGAGGCATCTGTGA GTATTTGGATAATGTCTTCCCAGATTTGGAGGCATCTGTGA < 41bp 0.72869598933054 0.522893950798584 0.69213676 0.42128047 prediction 0.411604077063912 Functional Loss - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151716855 chr7:151716859 nonsynonymous SNV 0.802 4 25 hm5C_associated_SNPs_93557 0 0 0 4 151716854 151716876 mRNA hsa-miR-27b GALNTL5 miRanda miRanda
7526 chr7 151716859 151716859 1 + G T HNSC 151716855 + 151716835 151716875 41 GTATTTGGATAATGTCTTCCCAGAGTTGGAGGCATCTGTGA GTATTTGGATAATGTCTTCCCAGATTTGGAGGCATCTGTGA < 41bp 0.72869598933054 0.522893950798584 0.69213676 0.42128047 prediction 0.411604077063912 Functional Loss - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151716855 chr7:151716859 nonsynonymous SNV 0.802 4 25 hm5C_associated_SNPs_93557 0 0 0 4 151716839 151716860 mRNA hsa-miR-330-5p GALNTL5 miRanda miRanda
7527 chr7 151716859 151716859 1 + G T HNSC 151716855 + 151716835 151716875 41 GTATTTGGATAATGTCTTCCCAGAGTTGGAGGCATCTGTGA GTATTTGGATAATGTCTTCCCAGATTTGGAGGCATCTGTGA < 41bp 0.72869598933054 0.522893950798584 0.69213676 0.42128047 prediction 0.411604077063912 Functional Loss - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151716855 chr7:151716859 nonsynonymous SNV 0.802 4 25 hm5C_associated_SNPs_93557 0 0 0 4 151716841 151716860 mRNA hsa-miR-326 GALNTL5 miRanda miRanda
7528 chr1 156348148 156348148 1 + C T rs190623502 156348145 + 156348125 156348165 41 CCCAGCTGGAGAAGAGCAAGCACCGCCAGGGCTCCGTCTAC CCCAGCTGGAGAAGAGCAAGCACTGCCAGGGCTCCGTCTAC < 41bp 0.713170457271094 0.507431089345785 0.027869552 0.18868011 prediction 0.411478735850618 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156348145 chr1:156348148 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_93617 0 0 1 1 156348147 156348167 mRNA hsa-miR-379 RHBG miRanda miRanda
7529 chr12 109949045 109949045 1 + C T SARC 109949042 + 109949022 109949062 41 AGCGTGCTCTTCCAAGAACTCGACAGGGACAGAAAACGGGC AGCGTGCTCTTCCAAGAACTCGATAGGGACAGAAAACGGGC < 41bp 0.774290414932065 0.568594764741146 0.46560866 0.46392107 prediction 0.411391300381837 Functional Loss - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109949042 chr12:109949045 synonymous SNV . 0 24 hm5C_associated_SNPs_93657 0 0 0 1 109949028 109949050 mRNA hsa-miR-339-5p UBE3B miRanda miRanda
7530 chr8 22106000 22106000 1 + G A COAD 22105997 + 22105977 22106017 41 CAGACTCTCTTTGGCAGTTCCTCGATGACCCCGGCCTGAGG CAGACTCTCTTTGGCAGTTCCTCAATGACCCCGGCCTGAGG < 41bp 0.813485122049553 0.607799583724906 0.90209323 0.9355403 prediction 0.411371076649295 Functional Loss - POLR3D ENSG00000168495 CDS Human protein_coding chr8:22105997 chr8:22106000 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_93664 0 0 1 1 22105994 22106000 mRNA hsa-miR-873 POLR3D miRanda miRanda
7531 chr20 25990501 25990501 1 + C T rs74175409 25990499 + 25990479 25990519 41 AGTAACTTGGCCAGGCTGGCCCCGAGCGGAACTGGAGAAAG AGTAACTTGGCCAGGCTGGCCCTGAGCGGAACTGGAGAAAG < 41bp 0.705659377486496 0.478425735928362 0.35690355 0.2671121 prediction 0.411318754972992 Functional Loss - LOC100134868 ENSG00000231081 ncRNA_intronic Human lincRNA chr20:25990499 chr20:25990501 . . 0 23 hm5C_associated_SNPs_93686 0 0 0 1 25990493 25990515 mRNA hsa-miR-145 LOC100134868 miRanda miRanda
7532 chrX 14938059 14938059 1 + G A rs111814474 14938056 + 14938036 14938076 41 TCCTAAAAGGAAATATGCAGCACGTGGAGGGGAACACATAC TCCTAAAAGGAAATATGCAGCACATGGAGGGGAACACATAC < 41bp 0.745407366806761 0.539777592071661 0.1268256 0.07784328 prediction 0.411259549470201 Functional Loss - MOSPD2 ENSG00000130150 UTR3 Human protein_coding chrX:14938056 chrX:14938059 . . 0 24 hm5C_associated_SNPs_93711 0 0 0 1 14938056 14938077 mRNA hsa-miR-142-3p MOSPD2 miRanda miRanda
7533 chr12 10343093 10343093 1 + G T rs4523782 10343089 + 10343069 10343109 41 CAAGTTGTGTCTCTCTCTGTCAGCGAATCCACTGCGGTTAA CAAGTTGTGTCTCTCTCTGTCAGCTAATCCACTGCGGTTAA < 41bp 0.722919449081639 0.517293030547127 0.4436861 0.43672597 prediction 0.411252837069023 Functional Loss - TMEM52B ENSG00000165685 UTR3 Human protein_coding chr12:10343089 chr12:10343093 . . 0 25 hm5C_associated_SNPs_93716 0 0 0 1 10343091 10343115 mRNA hsa-miR-145 C12orf59 miRanda miRanda
7534 chr10 95557398 95557398 1 + G A LUAD 95557395 + 95557375 95557415 41 TCCTTTACTCAAGTGTATAACTGGGATGCAGAGAAAGCCAA TCCTTTACTCAAGTGTATAACTGAGATGCAGAGAAAGCCAA < 41bp 0.771502301869514 0.565883779638323 0.26349556 0.1260063 prediction 0.411237044462381 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95557395 chr10:95557398 stopgain 1.000 1 24 hm5C_associated_SNPs_93724 0 0 0 5 95557392 95557416 mRNA hsa-miR-135a LGI1 miRanda miRanda
7535 chr10 95557398 95557398 1 + G A LUAD 95557395 + 95557375 95557415 41 TCCTTTACTCAAGTGTATAACTGGGATGCAGAGAAAGCCAA TCCTTTACTCAAGTGTATAACTGAGATGCAGAGAAAGCCAA < 41bp 0.771502301869514 0.565883779638323 0.26349556 0.1260063 prediction 0.411237044462381 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95557395 chr10:95557398 stopgain 1.000 1 24 hm5C_associated_SNPs_93724 0 0 0 5 95557377 95557400 mRNA hsa-miR-145 LGI1 miRanda miRanda
7536 chr10 95557398 95557398 1 + G A LUAD 95557395 + 95557375 95557415 41 TCCTTTACTCAAGTGTATAACTGGGATGCAGAGAAAGCCAA TCCTTTACTCAAGTGTATAACTGAGATGCAGAGAAAGCCAA < 41bp 0.771502301869514 0.565883779638323 0.26349556 0.1260063 prediction 0.411237044462381 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95557395 chr10:95557398 stopgain 1.000 1 24 hm5C_associated_SNPs_93724 0 0 0 5 95557390 95557416 mRNA hsa-miR-135b LGI1 miRanda miRanda
7537 chr10 95557398 95557398 1 + G A LUAD 95557395 + 95557375 95557415 41 TCCTTTACTCAAGTGTATAACTGGGATGCAGAGAAAGCCAA TCCTTTACTCAAGTGTATAACTGAGATGCAGAGAAAGCCAA < 41bp 0.771502301869514 0.565883779638323 0.26349556 0.1260063 prediction 0.411237044462381 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95557395 chr10:95557398 stopgain 1.000 1 24 hm5C_associated_SNPs_93724 0 0 0 5 95557381 95557404 mRNA hsa-miR-324-5p LGI1 miRanda miRanda
7538 chr10 95557398 95557398 1 + G A LUAD 95557395 + 95557375 95557415 41 TCCTTTACTCAAGTGTATAACTGGGATGCAGAGAAAGCCAA TCCTTTACTCAAGTGTATAACTGAGATGCAGAGAAAGCCAA < 41bp 0.771502301869514 0.565883779638323 0.26349556 0.1260063 prediction 0.411237044462381 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95557395 chr10:95557398 stopgain 1.000 1 24 hm5C_associated_SNPs_93724 0 0 0 5 95557388 95557408 mRNA hsa-miR-544 LGI1 miRanda miRanda
7539 chr1 86048778 86048778 1 + A C rs538855206 86048777 + 86048757 86048797 41 CAAACAAGGGAGAAGAGTGTCAGAATCAGAATCATGGAGAA CAAACAAGGGAGAAGAGTGTCCGAATCAGAATCATGGAGAA < 41bp 0.787600930024547 0.582002743299626 0.27840382 0.03450504 prediction 0.411196373449841 Functional Loss - CYR61 ENSG00000142871 UTR3 Human protein_coding chr1:86048777 chr1:86048778 . . 0 22 hm5C_associated_SNPs_93745 0 0 1 1 86048760 86048782 mRNA hsa-miR-544 CYR61 miRanda miRanda
7540 chr15 45847921 45847921 1 + T C rs8042811 45847920 + 45847900 45847940 41 AAACCAAGGTTAAGTAGGAACTGCAGAGAAGATCCACAAGG AAACCAAGGTTAAGTAGGAACCGCAGAGAAGATCCACAAGG < 41bp 0.749575982705919 0.544029270975382 0.28377718 0.16100875 prediction 0.411093423461072 Functional Loss - HMGN2P46 ENSG00000179362 ncRNA_exonic Human transcribed_processed_pseudogene chr15:45847920 chr15:45847921 . . 0 22 hm5C_associated_SNPs_93796 0 0 0 1 45847913 45847935 mRNA hsa-miR-876-5p C15orf21 miRanda miRanda
7541 chr19 4359240 4359240 1 + C T COAD 4359238 + 4359218 4359258 41 GGAGCCAGGAGCACACCTACCTCGACAAGCTTAAGGTGAGC GGAGCCAGGAGCACACCTACCTTGACAAGCTTAAGGTGAGC < 41bp 0.849459091369038 0.643991052603448 0.26407892 0.023291826 prediction 0.410936077531181 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4359238 chr19:4359240 synonymous SNV . 0 23 hm5C_associated_SNPs_93859 0 0 1 10 4359219 4359241 mRNA hsa-let-7a MPND miRanda miRanda
7542 chr19 4359240 4359240 1 + C T COAD 4359238 + 4359218 4359258 41 GGAGCCAGGAGCACACCTACCTCGACAAGCTTAAGGTGAGC GGAGCCAGGAGCACACCTACCTTGACAAGCTTAAGGTGAGC < 41bp 0.849459091369038 0.643991052603448 0.26407892 0.023291826 prediction 0.410936077531181 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4359238 chr19:4359240 synonymous SNV . 0 23 hm5C_associated_SNPs_93859 0 0 1 10 4359220 4359241 mRNA hsa-let-7b MPND miRanda miRanda
7543 chr19 4359240 4359240 1 + C T COAD 4359238 + 4359218 4359258 41 GGAGCCAGGAGCACACCTACCTCGACAAGCTTAAGGTGAGC GGAGCCAGGAGCACACCTACCTTGACAAGCTTAAGGTGAGC < 41bp 0.849459091369038 0.643991052603448 0.26407892 0.023291826 prediction 0.410936077531181 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4359238 chr19:4359240 synonymous SNV . 0 23 hm5C_associated_SNPs_93859 0 0 1 10 4359220 4359241 mRNA hsa-let-7c MPND miRanda miRanda
7544 chr19 4359240 4359240 1 + C T COAD 4359238 + 4359218 4359258 41 GGAGCCAGGAGCACACCTACCTCGACAAGCTTAAGGTGAGC GGAGCCAGGAGCACACCTACCTTGACAAGCTTAAGGTGAGC < 41bp 0.849459091369038 0.643991052603448 0.26407892 0.023291826 prediction 0.410936077531181 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4359238 chr19:4359240 synonymous SNV . 0 23 hm5C_associated_SNPs_93859 0 0 1 10 4359219 4359241 mRNA hsa-let-7d MPND miRanda miRanda
7545 chr19 4359240 4359240 1 + C T COAD 4359238 + 4359218 4359258 41 GGAGCCAGGAGCACACCTACCTCGACAAGCTTAAGGTGAGC GGAGCCAGGAGCACACCTACCTTGACAAGCTTAAGGTGAGC < 41bp 0.849459091369038 0.643991052603448 0.26407892 0.023291826 prediction 0.410936077531181 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4359238 chr19:4359240 synonymous SNV . 0 23 hm5C_associated_SNPs_93859 0 0 1 10 4359219 4359241 mRNA hsa-let-7e MPND miRanda miRanda
7546 chr19 4359240 4359240 1 + C T COAD 4359238 + 4359218 4359258 41 GGAGCCAGGAGCACACCTACCTCGACAAGCTTAAGGTGAGC GGAGCCAGGAGCACACCTACCTTGACAAGCTTAAGGTGAGC < 41bp 0.849459091369038 0.643991052603448 0.26407892 0.023291826 prediction 0.410936077531181 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4359238 chr19:4359240 synonymous SNV . 0 23 hm5C_associated_SNPs_93859 0 0 1 10 4359220 4359241 mRNA hsa-let-7f MPND miRanda miRanda
7547 chr19 4359240 4359240 1 + C T COAD 4359238 + 4359218 4359258 41 GGAGCCAGGAGCACACCTACCTCGACAAGCTTAAGGTGAGC GGAGCCAGGAGCACACCTACCTTGACAAGCTTAAGGTGAGC < 41bp 0.849459091369038 0.643991052603448 0.26407892 0.023291826 prediction 0.410936077531181 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4359238 chr19:4359240 synonymous SNV . 0 23 hm5C_associated_SNPs_93859 0 0 1 10 4359221 4359241 mRNA hsa-miR-98 MPND miRanda miRanda
7548 chr19 4359240 4359240 1 + C T COAD 4359238 + 4359218 4359258 41 GGAGCCAGGAGCACACCTACCTCGACAAGCTTAAGGTGAGC GGAGCCAGGAGCACACCTACCTTGACAAGCTTAAGGTGAGC < 41bp 0.849459091369038 0.643991052603448 0.26407892 0.023291826 prediction 0.410936077531181 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4359238 chr19:4359240 synonymous SNV . 0 23 hm5C_associated_SNPs_93859 0 0 1 10 4359222 4359241 mRNA hsa-let-7g MPND miRanda miRanda
7549 chr19 4359240 4359240 1 + C T COAD 4359238 + 4359218 4359258 41 GGAGCCAGGAGCACACCTACCTCGACAAGCTTAAGGTGAGC GGAGCCAGGAGCACACCTACCTTGACAAGCTTAAGGTGAGC < 41bp 0.849459091369038 0.643991052603448 0.26407892 0.023291826 prediction 0.410936077531181 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4359238 chr19:4359240 synonymous SNV . 0 23 hm5C_associated_SNPs_93859 0 0 1 10 4359221 4359241 mRNA hsa-let-7i MPND miRanda miRanda
7550 chr19 4359240 4359240 1 + C T COAD 4359238 + 4359218 4359258 41 GGAGCCAGGAGCACACCTACCTCGACAAGCTTAAGGTGAGC GGAGCCAGGAGCACACCTACCTTGACAAGCTTAAGGTGAGC < 41bp 0.849459091369038 0.643991052603448 0.26407892 0.023291826 prediction 0.410936077531181 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4359238 chr19:4359240 synonymous SNV . 0 23 hm5C_associated_SNPs_93859 0 0 1 10 4359229 4359250 mRNA hsa-miR-382 MPND miRanda miRanda
7551 chr6 1395186 1395186 1 + G A rs113145019 1395183 + 1395163 1395203 41 ACGGATTCAAGTCACATGCACGCGGATAGCAGTAAGCCACA ACGGATTCAAGTCACATGCACGCAGATAGCAGTAAGCCACA < 41bp 0.792167960986578 0.586812965331199 0.37840453 0.27035242 prediction 0.410709991310758 Functional Loss - FOXF2 ENSG00000137273 UTR3 Human protein_coding chr6:1395183 chr6:1395186 . . 0 24 hm5C_associated_SNPs_93959 0 0 1 1 1395182 1395204 mRNA hsa-miR-218 FOXF2 miRanda miRanda
7552 chr9 136302909 136302909 1 + G A SKCM 136302906 + 136302886 136302926 41 CACATGTGCCGGGCCATTGGCGAGAGCTTCATCATGAAGCG CACATGTGCCGGGCCATTGGCGAAAGCTTCATCATGAAGCG < 41bp 0.794864983068634 0.589539878281359 0.39733076 0.14167267 prediction 0.410650209574551 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136302906 chr9:136302909 synonymous SNV . 0 24 hm5C_associated_SNPs_93989 0 0 0 1 136302902 136302923 mRNA hsa-miR-433 ADAMTS13 miRanda miRanda
7553 chr12 49888776 49888776 1 + G A rs151243398 49888773 + 49888753 49888793 41 AGTCTGCCATGCTAGATACGCTGGATAGAACAGGTGAGTTT AGTCTGCCATGCTAGATACGCTGAATAGAACAGGTGAGTTT < 41bp 0.799172264306719 0.593847264278412 0.5440843 0.18788394 prediction 0.410650000056614 Functional Loss - SPATS2 ENSG00000123352 CDS Human protein_coding chr12:49888773 chr12:49888776 nonsynonymous SNV 0.331 1 24 hm5C_associated_SNPs_93990 0 0 1 2 49888775 49888785 mRNA hsa-miR-103 SPATS2 miRanda miRanda
7554 chr12 49888776 49888776 1 + G A rs151243398 49888773 + 49888753 49888793 41 AGTCTGCCATGCTAGATACGCTGGATAGAACAGGTGAGTTT AGTCTGCCATGCTAGATACGCTGAATAGAACAGGTGAGTTT < 41bp 0.799172264306719 0.593847264278412 0.5440843 0.18788394 prediction 0.410650000056614 Functional Loss - SPATS2 ENSG00000123352 CDS Human protein_coding chr12:49888773 chr12:49888776 nonsynonymous SNV 0.331 1 24 hm5C_associated_SNPs_93990 0 0 1 2 49888775 49888785 mRNA hsa-miR-107 SPATS2 miRanda miRanda
7555 chr10 27459497 27459497 1 + G A UCEC 27459494 + 27459474 27459514 41 CAAAAAACCTTATGTGTGAACTCGATGAAGACTGTGAAAAG CAAAAAACCTTATGTGTGAACTCAATGAAGACTGTGAAAAG < 41bp 0.74693749173548 0.541703246498053 0.060922056 0.05996415 prediction 0.410468490474855 Functional Loss - MASTL ENSG00000120539 CDS Human protein_coding chr10:27459494 chr10:27459497 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_94078 0 0 1 2 27459488 27459511 mRNA hsa-miR-27a MASTL miRanda miRanda
7556 chr10 27459497 27459497 1 + G A UCEC 27459494 + 27459474 27459514 41 CAAAAAACCTTATGTGTGAACTCGATGAAGACTGTGAAAAG CAAAAAACCTTATGTGTGAACTCAATGAAGACTGTGAAAAG < 41bp 0.74693749173548 0.541703246498053 0.060922056 0.05996415 prediction 0.410468490474855 Functional Loss - MASTL ENSG00000120539 CDS Human protein_coding chr10:27459494 chr10:27459497 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_94078 0 0 1 2 27459488 27459511 mRNA hsa-miR-27b MASTL miRanda miRanda
7557 chr4 158233857 158233857 1 + G A SKCM 158233854 + 158233834 158233874 41 TATCAACACTGCAAGCTGTGCTGGATTCTGCTGCTGAAAAG TATCAACACTGCAAGCTGTGCTGAATTCTGCTGCTGAAAAG < 41bp 0.75331370641005 0.548086842335562 0.31673896 0.18520728 prediction 0.410453728148977 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158233854 chr4:158233857 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_94082 0 0 0 6 158233843 158233869 mRNA hsa-miR-15a GRIA2 miRanda miRanda
7558 chr4 158233857 158233857 1 + G A SKCM 158233854 + 158233834 158233874 41 TATCAACACTGCAAGCTGTGCTGGATTCTGCTGCTGAAAAG TATCAACACTGCAAGCTGTGCTGAATTCTGCTGCTGAAAAG < 41bp 0.75331370641005 0.548086842335562 0.31673896 0.18520728 prediction 0.410453728148977 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158233854 chr4:158233857 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_94082 0 0 0 6 158233848 158233869 mRNA hsa-miR-16 GRIA2 miRanda miRanda
7559 chr4 158233857 158233857 1 + G A SKCM 158233854 + 158233834 158233874 41 TATCAACACTGCAAGCTGTGCTGGATTCTGCTGCTGAAAAG TATCAACACTGCAAGCTGTGCTGAATTCTGCTGCTGAAAAG < 41bp 0.75331370641005 0.548086842335562 0.31673896 0.18520728 prediction 0.410453728148977 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158233854 chr4:158233857 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_94082 0 0 0 6 158233843 158233869 mRNA hsa-miR-15b GRIA2 miRanda miRanda
7560 chr4 158233857 158233857 1 + G A SKCM 158233854 + 158233834 158233874 41 TATCAACACTGCAAGCTGTGCTGGATTCTGCTGCTGAAAAG TATCAACACTGCAAGCTGTGCTGAATTCTGCTGCTGAAAAG < 41bp 0.75331370641005 0.548086842335562 0.31673896 0.18520728 prediction 0.410453728148977 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158233854 chr4:158233857 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_94082 0 0 0 6 158233849 158233869 mRNA hsa-miR-195 GRIA2 miRanda miRanda
7561 chr4 158233857 158233857 1 + G A SKCM 158233854 + 158233834 158233874 41 TATCAACACTGCAAGCTGTGCTGGATTCTGCTGCTGAAAAG TATCAACACTGCAAGCTGTGCTGAATTCTGCTGCTGAAAAG < 41bp 0.75331370641005 0.548086842335562 0.31673896 0.18520728 prediction 0.410453728148977 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158233854 chr4:158233857 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_94082 0 0 0 6 158233846 158233869 mRNA hsa-miR-424 GRIA2 miRanda miRanda
7562 chr4 158233857 158233857 1 + G A SKCM 158233854 + 158233834 158233874 41 TATCAACACTGCAAGCTGTGCTGGATTCTGCTGCTGAAAAG TATCAACACTGCAAGCTGTGCTGAATTCTGCTGCTGAAAAG < 41bp 0.75331370641005 0.548086842335562 0.31673896 0.18520728 prediction 0.410453728148977 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158233854 chr4:158233857 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_94082 0 0 0 6 158233849 158233869 mRNA hsa-miR-497 GRIA2 miRanda miRanda
7563 chr1 153004864 153004864 1 + C T CESC 153004862 + 153004842 153004882 41 GCAGCCTTGCACCCCACCCCCTCAGCTTCAGCAGCAGCAGG GCAGCCTTGCACCCCACCCCCTTAGCTTCAGCAGCAGCAGG < 41bp 0.705206894372248 0.450425378452613 0.047166646 0.08089864 prediction 0.410413788744496 Functional Loss - SPRR1B ENSG00000169469 CDS Human protein_coding chr1:153004862 chr1:153004864 stopgain 0.317 0 23 hm5C_associated_SNPs_94092 0 0 0 1 153004862 153004883 mRNA hsa-miR-370 SPRR1B miRanda miRanda
7564 chr5 76332437 76332437 1 + T C LIHC 76332436 + 76332416 76332456 41 CTTAGAAGGCTCATCATTAGCTGAAAGTTTGAGAGCTGCAG CTTAGAAGGCTCATCATTAGCCGAAAGTTTGAGAGCTGCAG < 41bp 0.827022240955903 0.621842145471391 0.20703772 0.23457766 prediction 0.410360190969024 Functional Loss - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76332436 chr5:76332437 synonymous SNV . 0 22 hm5C_associated_SNPs_94112 0 0 1 1 76332430 76332449 mRNA hsa-miR-371-5p AGGF1 miRanda miRanda
7565 chr6 35263057 35263057 1 + G A rs73745179 35263054 + 35263034 35263074 41 GGGCTGGGTCCCACACCATGCTGGAGGAAGTGCCATCTGCA GGGCTGGGTCCCACACCATGCTGAAGGAAGTGCCATCTGCA < 41bp 0.783354386740661 0.578226941200294 0.20533046 0.16489747 prediction 0.410254891080734 Functional Loss - ZNF76 ENSG00000065029 UTR3 Human protein_coding chr6:35263054 chr6:35263057 . . 0 24 hm5C_associated_SNPs_94145 0 0 1 2 35263049 35263070 mRNA hsa-miR-183 ZNF76 miRanda miRanda
7566 chr6 35263057 35263057 1 + G A rs73745179 35263054 + 35263034 35263074 41 GGGCTGGGTCCCACACCATGCTGGAGGAAGTGCCATCTGCA GGGCTGGGTCCCACACCATGCTGAAGGAAGTGCCATCTGCA < 41bp 0.783354386740661 0.578226941200294 0.20533046 0.16489747 prediction 0.410254891080734 Functional Loss - ZNF76 ENSG00000065029 UTR3 Human protein_coding chr6:35263054 chr6:35263057 . . 0 24 hm5C_associated_SNPs_94145 0 0 1 2 35263038 35263058 mRNA hsa-miR-338-3p ZNF76 miRanda miRanda
7567 chr13 25353881 25353881 1 + G A SKCM 25353878 + 25353858 25353898 41 TTTCGAACAGTTAAGCATTGCTGGAAAAGTAAGCACTTTGC TTTCGAACAGTTAAGCATTGCTGAAAAAGTAAGCACTTTGC < 41bp 0.705101833086165 0.485661575980779 0.4508662 0.31003964 prediction 0.41020366617233 Functional Loss - RNF17 ENSG00000132972 CDS Human protein_coding chr13:25353878 chr13:25353881 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_94171 0 0 0 1 25353880 25353885 mRNA hsa-miR-33a RNF17 miRanda miRanda
7568 chr10 89472953 89472953 1 + C T rs144784084 89472951 + 89472931 89472971 41 GTCATGGCCTTAACAGAAATCTCGGATTCTCTCCTGGGGAC GTCATGGCCTTAACAGAAATCTTGGATTCTCTCCTGGGGAC < 41bp 0.879183926014164 0.674168691758016 0.41014785 0.2517291 prediction 0.410030468512296 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89472951 chr10:89472953 synonymous SNV . 0 23 hm5C_associated_SNPs_94255 0 0 0 1 89472943 89472965 mRNA hsa-miR-185 PAPSS2 miRanda miRanda
7569 chr11 6413195 6413195 1 + C T CESC 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCACTGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.531985472221177 0.19992825 0.14518529 prediction 0.409928178789844 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413195 synonymous SNV . 0 24 hm5C_associated_SNPs_94315 0 0 0 12 6413188 6413208 mRNA hsa-miR-302a SMPD1 miRanda miRanda
7570 chr11 6413195 6413195 1 + C T CESC 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCACTGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.531985472221177 0.19992825 0.14518529 prediction 0.409928178789844 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413195 synonymous SNV . 0 24 hm5C_associated_SNPs_94315 0 0 0 12 6413184 6413208 mRNA hsa-miR-302b SMPD1 miRanda miRanda
7571 chr11 6413195 6413195 1 + C T CESC 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCACTGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.531985472221177 0.19992825 0.14518529 prediction 0.409928178789844 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413195 synonymous SNV . 0 24 hm5C_associated_SNPs_94315 0 0 0 12 6413184 6413208 mRNA hsa-miR-302c SMPD1 miRanda miRanda
7572 chr11 6413195 6413195 1 + C T CESC 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCACTGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.531985472221177 0.19992825 0.14518529 prediction 0.409928178789844 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413195 synonymous SNV . 0 24 hm5C_associated_SNPs_94315 0 0 0 12 6413186 6413208 mRNA hsa-miR-302d SMPD1 miRanda miRanda
7573 chr11 6413195 6413195 1 + C T CESC 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCACTGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.531985472221177 0.19992825 0.14518529 prediction 0.409928178789844 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413195 synonymous SNV . 0 24 hm5C_associated_SNPs_94315 0 0 0 12 6413186 6413208 mRNA hsa-miR-372 SMPD1 miRanda miRanda
7574 chr11 6413195 6413195 1 + C T CESC 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCACTGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.531985472221177 0.19992825 0.14518529 prediction 0.409928178789844 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413195 synonymous SNV . 0 24 hm5C_associated_SNPs_94315 0 0 0 12 6413186 6413208 mRNA hsa-miR-373 SMPD1 miRanda miRanda
7575 chr11 6413195 6413195 1 + C T CESC 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCACTGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.531985472221177 0.19992825 0.14518529 prediction 0.409928178789844 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413195 synonymous SNV . 0 24 hm5C_associated_SNPs_94315 0 0 0 12 6413188 6413208 mRNA hsa-miR-520e SMPD1 miRanda miRanda
7576 chr11 6413195 6413195 1 + C T CESC 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCACTGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.531985472221177 0.19992825 0.14518529 prediction 0.409928178789844 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413195 synonymous SNV . 0 24 hm5C_associated_SNPs_94315 0 0 0 12 6413186 6413208 mRNA hsa-miR-520a-3p SMPD1 miRanda miRanda
7577 chr11 6413195 6413195 1 + C T CESC 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCACTGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.531985472221177 0.19992825 0.14518529 prediction 0.409928178789844 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413195 synonymous SNV . 0 24 hm5C_associated_SNPs_94315 0 0 0 12 6413188 6413208 mRNA hsa-miR-520b SMPD1 miRanda miRanda
7578 chr11 6413195 6413195 1 + C T CESC 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCACTGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.531985472221177 0.19992825 0.14518529 prediction 0.409928178789844 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413195 synonymous SNV . 0 24 hm5C_associated_SNPs_94315 0 0 0 12 6413187 6413208 mRNA hsa-miR-520c-3p SMPD1 miRanda miRanda
7579 chr11 6413195 6413195 1 + C T CESC 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCACTGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.531985472221177 0.19992825 0.14518529 prediction 0.409928178789844 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413195 synonymous SNV . 0 24 hm5C_associated_SNPs_94315 0 0 0 12 6413186 6413208 mRNA hsa-miR-520d-3p SMPD1 miRanda miRanda
7580 chr11 6413195 6413195 1 + C T CESC 6413192 + 6413172 6413212 41 GACCAACTGCGGGCCCTGACCACCGTCACAGCACTTGTGAG GACCAACTGCGGGCCCTGACCACTGTCACAGCACTTGTGAG < 41bp 0.736949561616099 0.531985472221177 0.19992825 0.14518529 prediction 0.409928178789844 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413192 chr11:6413195 synonymous SNV . 0 24 hm5C_associated_SNPs_94315 0 0 0 12 6413192 6413208 mRNA hsa-miR-302e SMPD1 miRanda miRanda
7581 chr20 61599474 61599474 1 + C T rs1047126 61599472 + 61599452 61599492 41 CCAGGTAGCCACCCTCGAGACACGACCTCAGAGTCTCTGTG CCAGGTAGCCACCCTCGAGACATGACCTCAGAGTCTCTGTG < 41bp 0.720128010074324 0.515209020057005 0.02050221 0.048939973 prediction 0.409837980034638 Functional Loss - SLC17A9 ENSG00000101194 UTR3 Human protein_coding chr20:61599472 chr20:61599474 . . 0 23 hm5C_associated_SNPs_94363 0 0 1 1 61599453 61599476 mRNA hsa-miR-187 SLC17A9 miRanda miRanda
7582 chr1 2336562 2336562 1 + G A rs150136015 2336559 + 2336539 2336579 41 CAGATTTCTGTTTTCTAAAACTGGAAGCGACCTTGACGTGT CAGATTTCTGTTTTCTAAAACTGAAAGCGACCTTGACGTGT < 41bp 0.745361386647579 0.540445711170339 0.32542628 0.18011239 prediction 0.409831350954481 Functional Loss - PEX10;RER1 ENSG00000157911;ENSG00000157916 UTR3 Human other chr1:2336559 chr1:2336562 . . 0 24 hm5C_associated_SNPs_94365 0 0 1 3 2336550 2336573 mRNA hsa-miR-18a RER1 miRanda miRanda
7583 chr1 2336562 2336562 1 + G A rs150136015 2336559 + 2336539 2336579 41 CAGATTTCTGTTTTCTAAAACTGGAAGCGACCTTGACGTGT CAGATTTCTGTTTTCTAAAACTGAAAGCGACCTTGACGTGT < 41bp 0.745361386647579 0.540445711170339 0.32542628 0.18011239 prediction 0.409831350954481 Functional Loss - PEX10;RER1 ENSG00000157911;ENSG00000157916 UTR3 Human other chr1:2336559 chr1:2336562 . . 0 24 hm5C_associated_SNPs_94365 0 0 1 3 2336538 2336564 mRNA hsa-miR-145 RER1 miRanda miRanda
7584 chr1 2336562 2336562 1 + G A rs150136015 2336559 + 2336539 2336579 41 CAGATTTCTGTTTTCTAAAACTGGAAGCGACCTTGACGTGT CAGATTTCTGTTTTCTAAAACTGAAAGCGACCTTGACGTGT < 41bp 0.745361386647579 0.540445711170339 0.32542628 0.18011239 prediction 0.409831350954481 Functional Loss - PEX10;RER1 ENSG00000157911;ENSG00000157916 UTR3 Human other chr1:2336559 chr1:2336562 . . 0 24 hm5C_associated_SNPs_94365 0 0 1 3 2336550 2336573 mRNA hsa-miR-18b RER1 miRanda miRanda
7585 chr11 3430116 3430116 1 + G T LUAD 3430112 + 3430092 3430132 41 CCACAGCTTCTTCTCAGAGTCTCAGGGCAAATCCTTTCGAG CCACAGCTTCTTCTCAGAGTCTCATGGCAAATCCTTTCGAG < 41bp 0.704912679370043 0.496710365936096 0.11532587 0.03103602 prediction 0.409825358740085 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3430112 chr11:3430116 . . 0 25 hm5C_associated_SNPs_94369 0 0 0 5 3430098 3430119 mRNA hsa-miR-125b LOC650368 miRanda miRanda
7586 chr11 3430116 3430116 1 + G T LUAD 3430112 + 3430092 3430132 41 CCACAGCTTCTTCTCAGAGTCTCAGGGCAAATCCTTTCGAG CCACAGCTTCTTCTCAGAGTCTCATGGCAAATCCTTTCGAG < 41bp 0.704912679370043 0.496710365936096 0.11532587 0.03103602 prediction 0.409825358740085 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3430112 chr11:3430116 . . 0 25 hm5C_associated_SNPs_94369 0 0 0 5 3430096 3430119 mRNA hsa-miR-125a-5p LOC650368 miRanda miRanda
7587 chr11 3430116 3430116 1 + G T LUAD 3430112 + 3430092 3430132 41 CCACAGCTTCTTCTCAGAGTCTCAGGGCAAATCCTTTCGAG CCACAGCTTCTTCTCAGAGTCTCATGGCAAATCCTTTCGAG < 41bp 0.704912679370043 0.496710365936096 0.11532587 0.03103602 prediction 0.409825358740085 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3430112 chr11:3430116 . . 0 25 hm5C_associated_SNPs_94369 0 0 0 5 3430097 3430117 mRNA hsa-miR-378 LOC650368 miRanda miRanda
7588 chr11 3430116 3430116 1 + G T LUAD 3430112 + 3430092 3430132 41 CCACAGCTTCTTCTCAGAGTCTCAGGGCAAATCCTTTCGAG CCACAGCTTCTTCTCAGAGTCTCATGGCAAATCCTTTCGAG < 41bp 0.704912679370043 0.496710365936096 0.11532587 0.03103602 prediction 0.409825358740085 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3430112 chr11:3430116 . . 0 25 hm5C_associated_SNPs_94369 0 0 0 5 3430096 3430117 mRNA hsa-miR-422a LOC650368 miRanda miRanda
7589 chr11 3430116 3430116 1 + G T LUAD 3430112 + 3430092 3430132 41 CCACAGCTTCTTCTCAGAGTCTCAGGGCAAATCCTTTCGAG CCACAGCTTCTTCTCAGAGTCTCATGGCAAATCCTTTCGAG < 41bp 0.704912679370043 0.496710365936096 0.11532587 0.03103602 prediction 0.409825358740085 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3430112 chr11:3430116 . . 0 25 hm5C_associated_SNPs_94369 0 0 0 5 3430099 3430121 mRNA hsa-miR-874 LOC650368 miRanda miRanda
7590 chr14 60530107 60530107 1 + C T rs61994053 60530104 + 60530084 60530124 41 CCTAAAGAGAAATGAGCATACACCAAGAAACTCACCTGTTT CCTAAAGAGAAATGAGCATACACTAAGAAACTCACCTGTTT < 41bp 0.709538286441872 0.504661152735242 0.05416727 0.029636055 prediction 0.409754267413262 Functional Loss - LRRC9 ENSG00000131951 CDS Human protein_coding chr14:60530104 chr14:60530107 nonsynonymous SNV 0.859 1 24 hm5C_associated_SNPs_94398 0 0 0 3 60530098 60530121 mRNA hsa-miR-196a LRRC9 miRanda miRanda
7591 chr14 60530107 60530107 1 + C T rs61994053 60530104 + 60530084 60530124 41 CCTAAAGAGAAATGAGCATACACCAAGAAACTCACCTGTTT CCTAAAGAGAAATGAGCATACACTAAGAAACTCACCTGTTT < 41bp 0.709538286441872 0.504661152735242 0.05416727 0.029636055 prediction 0.409754267413262 Functional Loss - LRRC9 ENSG00000131951 CDS Human protein_coding chr14:60530104 chr14:60530107 nonsynonymous SNV 0.859 1 24 hm5C_associated_SNPs_94398 0 0 0 3 60530101 60530122 mRNA hsa-miR-125a-3p LRRC9 miRanda miRanda
7592 chr14 60530107 60530107 1 + C T rs61994053 60530104 + 60530084 60530124 41 CCTAAAGAGAAATGAGCATACACCAAGAAACTCACCTGTTT CCTAAAGAGAAATGAGCATACACTAAGAAACTCACCTGTTT < 41bp 0.709538286441872 0.504661152735242 0.05416727 0.029636055 prediction 0.409754267413262 Functional Loss - LRRC9 ENSG00000131951 CDS Human protein_coding chr14:60530104 chr14:60530107 nonsynonymous SNV 0.859 1 24 hm5C_associated_SNPs_94398 0 0 0 3 60530098 60530121 mRNA hsa-miR-196b LRRC9 miRanda miRanda
7593 chr10 106976817 106976817 1 + G A SKCM 106976814 + 106976794 106976834 41 ATAAGAGTGCGGGGATCTTCCAGGTGACAGCCTATGCAGAG ATAAGAGTGCGGGGATCTTCCAGATGACAGCCTATGCAGAG < 41bp 0.777277539941281 0.57241063915879 0.86225224 0.57280743 prediction 0.409733801564983 Functional Loss - SORCS3 ENSG00000156395 CDS Human protein_coding chr10:106976814 chr10:106976817 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_94409 0 0 0 1 106976811 106976832 mRNA hsa-miR-153 SORCS3 miRanda miRanda
7594 chr7 98956026 98956026 1 + C T LUAD 98956023 + 98956003 98956043 41 GTGTCATTTGTCTCAGAGAACAGCGTCGTGGCTGCTGTGAG GTGTCATTTGTCTCAGAGAACAGTGTCGTGGCTGCTGTGAG < 41bp 0.725902066955768 0.521097165590885 0.22971526 0.1750372 prediction 0.409609802729766 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98956023 chr7:98956026 synonymous SNV . 0 24 hm5C_associated_SNPs_94460 0 0 1 3 98956022 98956026 mRNA hsa-miR-328 ARPC1A miRanda miRanda
7595 chr7 98956026 98956026 1 + C T LUAD 98956023 + 98956003 98956043 41 GTGTCATTTGTCTCAGAGAACAGCGTCGTGGCTGCTGTGAG GTGTCATTTGTCTCAGAGAACAGTGTCGTGGCTGCTGTGAG < 41bp 0.725902066955768 0.521097165590885 0.22971526 0.1750372 prediction 0.409609802729766 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98956023 chr7:98956026 synonymous SNV . 0 24 hm5C_associated_SNPs_94460 0 0 1 3 98956010 98956026 mRNA hsa-miR-335 ARPC1A miRanda miRanda
7596 chr7 98956026 98956026 1 + C T LUAD 98956023 + 98956003 98956043 41 GTGTCATTTGTCTCAGAGAACAGCGTCGTGGCTGCTGTGAG GTGTCATTTGTCTCAGAGAACAGTGTCGTGGCTGCTGTGAG < 41bp 0.725902066955768 0.521097165590885 0.22971526 0.1750372 prediction 0.409609802729766 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98956023 chr7:98956026 synonymous SNV . 0 24 hm5C_associated_SNPs_94460 0 0 1 3 98956018 98956038 mRNA hsa-miR-497 ARPC1A miRanda miRanda
7597 chr17 65688832 65688832 1 + C T SARC 65688829 + 65688809 65688849 41 CCGCAGTGCGCCTTCTAGTGCTCCATCCACCCCTCTCTCCA CCGCAGTGCGCCTTCTAGTGCTCTATCCACCCCTCTCTCCA < 41bp 0.73544495882523 0.530656778225385 0.25826395 0.23103374 prediction 0.40957636119969 Functional Loss - PITPNC1 ENSG00000154217 CDS Human protein_coding chr17:65688829 chr17:65688832 nonsynonymous SNV 0.438 3 24 hm5C_associated_SNPs_94473 0 0 1 1 65688828 65688849 mRNA hsa-miR-185 PITPNC1 miRanda miRanda
7598 chr6 2990758 2990758 1 + G C rs147490169 2990754 + 2990734 2990774 41 AGCTCCGTGACTCGAGGAGACCGGGGGATCAGAGTTTGTTT AGCTCCGTGACTCGAGGAGACCGGCGGATCAGAGTTTGTTT < 41bp 0.704723736909149 0.40296151397718 0.90895945 0.6433358 prediction 0.409447473818298 Functional Loss - LINC01011 ENSG00000244041 ncRNA_exonic Human lincRNA chr6:2990754 chr6:2990758 . . 0 25 hm5C_associated_SNPs_94526 0 0 0 3 2990752 2990774 mRNA hsa-miR-495 DKFZP686I15217 miRanda miRanda
7599 chr6 2990758 2990758 1 + G C rs147490169 2990754 + 2990734 2990774 41 AGCTCCGTGACTCGAGGAGACCGGGGGATCAGAGTTTGTTT AGCTCCGTGACTCGAGGAGACCGGCGGATCAGAGTTTGTTT < 41bp 0.704723736909149 0.40296151397718 0.90895945 0.6433358 prediction 0.409447473818298 Functional Loss - LINC01011 ENSG00000244041 ncRNA_exonic Human lincRNA chr6:2990754 chr6:2990758 . . 0 25 hm5C_associated_SNPs_94526 0 0 0 3 2990752 2990774 lncRNA hsa-miR-495-3p LINC01011 miRanda starBase2
7600 chr6 2990758 2990758 1 + G C rs147490169 2990754 + 2990734 2990774 41 AGCTCCGTGACTCGAGGAGACCGGGGGATCAGAGTTTGTTT AGCTCCGTGACTCGAGGAGACCGGCGGATCAGAGTTTGTTT < 41bp 0.704723736909149 0.40296151397718 0.90895945 0.6433358 prediction 0.409447473818298 Functional Loss - LINC01011 ENSG00000244041 ncRNA_exonic Human lincRNA chr6:2990754 chr6:2990758 . . 0 25 hm5C_associated_SNPs_94526 0 0 0 3 2990754 2990774 lncRNA hsa-miR-5688 LINC01011 miRanda starBase2
7601 chr2 105123790 105123790 1 + G A rs550813769 105123787 + 105123767 105123807 41 CCCAACTGGGTCTCCCAAGCCTGGGCCACTGAACCATTTCA CCCAACTGGGTCTCCCAAGCCTGAGCCACTGAACCATTTCA < 41bp 0.730446053411885 0.525740112664343 0.3946103 0.2495592 prediction 0.409411881495084 Functional Loss - LINC01102 ENSG00000235597 ncRNA_exonic Human lincRNA chr2:105123787 chr2:105123790 . . 0 24 hm5C_associated_SNPs_94546 0 0 0 1 105123784 105123808 mRNA hsa-miR-203 LOC150568 miRanda miRanda
7602 chrX 77373623 77373623 1 + G T UCEC 77373619 + 77373599 77373639 41 GAAGGAGCTGAACTACTTTGCAAAGGCCTTGGAGAGCCCAG GAAGGAGCTGAACTACTTTGCAAATGCCTTGGAGAGCCCAG < 41bp 0.704883197786065 0.500185971934178 0.61801094 0.4353338 prediction 0.409394451703773 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373619 chrX:77373623 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_94553 0 0 1 2 77373617 77373642 mRNA hsa-miR-330-5p PGK1 miRanda miRanda
7603 chrX 77373623 77373623 1 + G T UCEC 77373619 + 77373599 77373639 41 GAAGGAGCTGAACTACTTTGCAAAGGCCTTGGAGAGCCCAG GAAGGAGCTGAACTACTTTGCAAATGCCTTGGAGAGCCCAG < 41bp 0.704883197786065 0.500185971934178 0.61801094 0.4353338 prediction 0.409394451703773 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373619 chrX:77373623 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_94553 0 0 1 2 77373623 77373642 mRNA hsa-miR-326 PGK1 miRanda miRanda
7604 chr12 66232315 66232315 1 + G A SKCM 66232312 + 66232292 66232332 41 TTTGCAGAAAGCAGAAGCCACTGGAGAAAAACGGCCAAGAG TTTGCAGAAAGCAGAAGCCACTGAAGAAAAACGGCCAAGAG < 41bp 0.704670427435738 0.491453531740355 0.22245717 0.14757028 prediction 0.409340854871476 Functional Loss - HMGA2 ENSG00000149948 CDS Human protein_coding chr12:66232312 chr12:66232315 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_94574 0 0 1 3 66232299 66232316 mRNA hsa-miR-199a-5p HMGA2 miRanda miRanda
7605 chr12 66232315 66232315 1 + G A SKCM 66232312 + 66232292 66232332 41 TTTGCAGAAAGCAGAAGCCACTGGAGAAAAACGGCCAAGAG TTTGCAGAAAGCAGAAGCCACTGAAGAAAAACGGCCAAGAG < 41bp 0.704670427435738 0.491453531740355 0.22245717 0.14757028 prediction 0.409340854871476 Functional Loss - HMGA2 ENSG00000149948 CDS Human protein_coding chr12:66232312 chr12:66232315 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_94574 0 0 1 3 66232299 66232316 mRNA hsa-miR-199b-5p HMGA2 miRanda miRanda
7606 chr12 66232315 66232315 1 + G A SKCM 66232312 + 66232292 66232332 41 TTTGCAGAAAGCAGAAGCCACTGGAGAAAAACGGCCAAGAG TTTGCAGAAAGCAGAAGCCACTGAAGAAAAACGGCCAAGAG < 41bp 0.704670427435738 0.491453531740355 0.22245717 0.14757028 prediction 0.409340854871476 Functional Loss - HMGA2 ENSG00000149948 CDS Human protein_coding chr12:66232312 chr12:66232315 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_94574 0 0 1 3 66232299 66232317 mRNA hsa-miR-145 HMGA2 miRanda miRanda
7607 chr3 37067384 37067384 1 + T C LUSC 37067383 + 37067363 37067403 41 GGCAGCAAGATGAGGAGATGCTTGAACTCCCAGCCCCTGCT GGCAGCAAGATGAGGAGATGCCTGAACTCCCAGCCCCTGCT < 41bp 0.773353159407052 0.568744330145151 0.35762346 0.4282353 prediction 0.409217658523801 Functional Loss - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37067383 chr3:37067384 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_94613 0 0 1 1 37067384 37067405 mRNA hsa-miR-214 MLH1 miRanda miRanda
7608 chr6 54173456 54173456 1 + T C LGG 54173455 + 54173435 54173475 41 GGACCTAGAGGCTTATTTCACTAGGAATCACACCGTTTTGC GGACCTAGAGGCTTATTTCACCAGGAATCACACCGTTTTGC < 41bp 0.767563839568143 0.562976714852383 0.82187223 0.8930443 prediction 0.40917424943152 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54173455 chr6:54173456 synonymous SNV . 0 22 hm5C_associated_SNPs_94634 0 0 0 1 54173441 54173462 mRNA hsa-miR-384 TINAG miRanda miRanda
7609 chr3 196449369 196449369 1 + C T GBM 196449366 + 196449346 196449386 41 CTTAATTAAACAGGACATTCCTGCAGGACTTTATGTGGATC CTTAATTAAACAGGACATTCCTGTAGGACTTTATGTGGATC < 41bp 0.789847898489761 0.58526947574336 0.040397674 0.028722793 prediction 0.409156845492802 Functional Loss - PIGX ENSG00000163964 CDS Human protein_coding chr3:196449366 chr3:196449369 nonsynonymous SNV 0.611 0 24 hm5C_associated_SNPs_94648 0 0 1 1 196449368 196449389 mRNA hsa-miR-127-3p PIGX miRanda miRanda
7610 chr17 73124919 73124919 1 + C T LUSC 73124916 + 73124896 73124936 41 CACGCTCATGCACCTGAGCCCGCCGGGCCGCAGCTTTCTCC CACGCTCATGCACCTGAGCCCGCTGGGCCGCAGCTTTCTCC < 41bp 0.746140223393707 0.541604994562201 0.7346581 0.41198123 prediction 0.409070457663011 Functional Loss - ARMC7 ENSG00000125449 CDS Human protein_coding chr17:73124916 chr17:73124919 nonsynonymous SNV 0.016 1 24 hm5C_associated_SNPs_94694 0 0 1 5 73124913 73124933 mRNA hsa-miR-93 ARMC7 miRanda miRanda
7611 chr17 73124919 73124919 1 + C T LUSC 73124916 + 73124896 73124936 41 CACGCTCATGCACCTGAGCCCGCCGGGCCGCAGCTTTCTCC CACGCTCATGCACCTGAGCCCGCTGGGCCGCAGCTTTCTCC < 41bp 0.746140223393707 0.541604994562201 0.7346581 0.41198123 prediction 0.409070457663011 Functional Loss - ARMC7 ENSG00000125449 CDS Human protein_coding chr17:73124916 chr17:73124919 nonsynonymous SNV 0.016 1 24 hm5C_associated_SNPs_94694 0 0 1 5 73124913 73124933 mRNA hsa-miR-320a ARMC7 miRanda miRanda
7612 chr17 73124919 73124919 1 + C T LUSC 73124916 + 73124896 73124936 41 CACGCTCATGCACCTGAGCCCGCCGGGCCGCAGCTTTCTCC CACGCTCATGCACCTGAGCCCGCTGGGCCGCAGCTTTCTCC < 41bp 0.746140223393707 0.541604994562201 0.7346581 0.41198123 prediction 0.409070457663011 Functional Loss - ARMC7 ENSG00000125449 CDS Human protein_coding chr17:73124916 chr17:73124919 nonsynonymous SNV 0.016 1 24 hm5C_associated_SNPs_94694 0 0 1 5 73124913 73124933 mRNA hsa-miR-320b ARMC7 miRanda miRanda
7613 chr17 73124919 73124919 1 + C T LUSC 73124916 + 73124896 73124936 41 CACGCTCATGCACCTGAGCCCGCCGGGCCGCAGCTTTCTCC CACGCTCATGCACCTGAGCCCGCTGGGCCGCAGCTTTCTCC < 41bp 0.746140223393707 0.541604994562201 0.7346581 0.41198123 prediction 0.409070457663011 Functional Loss - ARMC7 ENSG00000125449 CDS Human protein_coding chr17:73124916 chr17:73124919 nonsynonymous SNV 0.016 1 24 hm5C_associated_SNPs_94694 0 0 1 5 73124913 73124933 mRNA hsa-miR-320c ARMC7 miRanda miRanda
7614 chr17 73124919 73124919 1 + C T LUSC 73124916 + 73124896 73124936 41 CACGCTCATGCACCTGAGCCCGCCGGGCCGCAGCTTTCTCC CACGCTCATGCACCTGAGCCCGCTGGGCCGCAGCTTTCTCC < 41bp 0.746140223393707 0.541604994562201 0.7346581 0.41198123 prediction 0.409070457663011 Functional Loss - ARMC7 ENSG00000125449 CDS Human protein_coding chr17:73124916 chr17:73124919 nonsynonymous SNV 0.016 1 24 hm5C_associated_SNPs_94694 0 0 1 5 73124914 73124933 mRNA hsa-miR-320d ARMC7 miRanda miRanda
7615 chr1 161199501 161199501 1 - C T SKCM 161199504 - 161199484 161199524 41 TGCTGGGACCAAAGATTGGGCCGGGTTCAAAGGGAGCCCAG TGCTGGGACCAAAGATTGGGCCGAGTTCAAAGGGAGCCCAG < 41bp 0.713012082411571 0.508486376451897 0.85560983 0.20340535 prediction 0.409051411919349 Functional Loss - NR1I3 ENSG00000143257 CDS Human protein_coding chr1:161199504 chr1:161199501 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_94700 0 0 0 2 161199489 161199509 mRNA hsa-miR-204 NR1I3 miRanda miRanda
7616 chr1 161199501 161199501 1 - C T SKCM 161199504 - 161199484 161199524 41 TGCTGGGACCAAAGATTGGGCCGGGTTCAAAGGGAGCCCAG TGCTGGGACCAAAGATTGGGCCGAGTTCAAAGGGAGCCCAG < 41bp 0.713012082411571 0.508486376451897 0.85560983 0.20340535 prediction 0.409051411919349 Functional Loss - NR1I3 ENSG00000143257 CDS Human protein_coding chr1:161199504 chr1:161199501 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_94700 0 0 0 2 161199489 161199509 mRNA hsa-miR-211 NR1I3 miRanda miRanda
7617 chr3 9965627 9965627 1 + G T BLCA 9965625 + 9965605 9965645 41 GCATCTGGTTCTGAATGTCTCTGAGGAGCAGCACTTCGGCC GCATCTGGTTCTGAATGTCTCTTAGGAGCAGCACTTCGGCC < 41bp 0.704525498966517 0.366330405409376 0.26326472 0.058918744 prediction 0.409050997933033 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9965625 chr3:9965627 stopgain 0.842 0 23 hm5C_associated_SNPs_94701 0 0 1 12 9965619 9965641 mRNA hsa-miR-302a IL17RC miRanda miRanda
7618 chr3 9965627 9965627 1 + G T BLCA 9965625 + 9965605 9965645 41 GCATCTGGTTCTGAATGTCTCTGAGGAGCAGCACTTCGGCC GCATCTGGTTCTGAATGTCTCTTAGGAGCAGCACTTCGGCC < 41bp 0.704525498966517 0.366330405409376 0.26326472 0.058918744 prediction 0.409050997933033 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9965625 chr3:9965627 stopgain 0.842 0 23 hm5C_associated_SNPs_94701 0 0 1 12 9965622 9965641 mRNA hsa-miR-302b IL17RC miRanda miRanda
7619 chr3 9965627 9965627 1 + G T BLCA 9965625 + 9965605 9965645 41 GCATCTGGTTCTGAATGTCTCTGAGGAGCAGCACTTCGGCC GCATCTGGTTCTGAATGTCTCTTAGGAGCAGCACTTCGGCC < 41bp 0.704525498966517 0.366330405409376 0.26326472 0.058918744 prediction 0.409050997933033 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9965625 chr3:9965627 stopgain 0.842 0 23 hm5C_associated_SNPs_94701 0 0 1 12 9965622 9965641 mRNA hsa-miR-302c IL17RC miRanda miRanda
7620 chr3 9965627 9965627 1 + G T BLCA 9965625 + 9965605 9965645 41 GCATCTGGTTCTGAATGTCTCTGAGGAGCAGCACTTCGGCC GCATCTGGTTCTGAATGTCTCTTAGGAGCAGCACTTCGGCC < 41bp 0.704525498966517 0.366330405409376 0.26326472 0.058918744 prediction 0.409050997933033 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9965625 chr3:9965627 stopgain 0.842 0 23 hm5C_associated_SNPs_94701 0 0 1 12 9965620 9965641 mRNA hsa-miR-302d IL17RC miRanda miRanda
7621 chr3 9965627 9965627 1 + G T BLCA 9965625 + 9965605 9965645 41 GCATCTGGTTCTGAATGTCTCTGAGGAGCAGCACTTCGGCC GCATCTGGTTCTGAATGTCTCTTAGGAGCAGCACTTCGGCC < 41bp 0.704525498966517 0.366330405409376 0.26326472 0.058918744 prediction 0.409050997933033 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9965625 chr3:9965627 stopgain 0.842 0 23 hm5C_associated_SNPs_94701 0 0 1 12 9965620 9965641 mRNA hsa-miR-372 IL17RC miRanda miRanda
7622 chr3 9965627 9965627 1 + G T BLCA 9965625 + 9965605 9965645 41 GCATCTGGTTCTGAATGTCTCTGAGGAGCAGCACTTCGGCC GCATCTGGTTCTGAATGTCTCTTAGGAGCAGCACTTCGGCC < 41bp 0.704525498966517 0.366330405409376 0.26326472 0.058918744 prediction 0.409050997933033 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9965625 chr3:9965627 stopgain 0.842 0 23 hm5C_associated_SNPs_94701 0 0 1 12 9965619 9965641 mRNA hsa-miR-373 IL17RC miRanda miRanda
7623 chr3 9965627 9965627 1 + G T BLCA 9965625 + 9965605 9965645 41 GCATCTGGTTCTGAATGTCTCTGAGGAGCAGCACTTCGGCC GCATCTGGTTCTGAATGTCTCTTAGGAGCAGCACTTCGGCC < 41bp 0.704525498966517 0.366330405409376 0.26326472 0.058918744 prediction 0.409050997933033 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9965625 chr3:9965627 stopgain 0.842 0 23 hm5C_associated_SNPs_94701 0 0 1 12 9965621 9965641 mRNA hsa-miR-520e IL17RC miRanda miRanda
7624 chr3 9965627 9965627 1 + G T BLCA 9965625 + 9965605 9965645 41 GCATCTGGTTCTGAATGTCTCTGAGGAGCAGCACTTCGGCC GCATCTGGTTCTGAATGTCTCTTAGGAGCAGCACTTCGGCC < 41bp 0.704525498966517 0.366330405409376 0.26326472 0.058918744 prediction 0.409050997933033 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9965625 chr3:9965627 stopgain 0.842 0 23 hm5C_associated_SNPs_94701 0 0 1 12 9965620 9965641 mRNA hsa-miR-520a-3p IL17RC miRanda miRanda
7625 chr3 9965627 9965627 1 + G T BLCA 9965625 + 9965605 9965645 41 GCATCTGGTTCTGAATGTCTCTGAGGAGCAGCACTTCGGCC GCATCTGGTTCTGAATGTCTCTTAGGAGCAGCACTTCGGCC < 41bp 0.704525498966517 0.366330405409376 0.26326472 0.058918744 prediction 0.409050997933033 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9965625 chr3:9965627 stopgain 0.842 0 23 hm5C_associated_SNPs_94701 0 0 1 12 9965621 9965641 mRNA hsa-miR-520b IL17RC miRanda miRanda
7626 chr3 9965627 9965627 1 + G T BLCA 9965625 + 9965605 9965645 41 GCATCTGGTTCTGAATGTCTCTGAGGAGCAGCACTTCGGCC GCATCTGGTTCTGAATGTCTCTTAGGAGCAGCACTTCGGCC < 41bp 0.704525498966517 0.366330405409376 0.26326472 0.058918744 prediction 0.409050997933033 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9965625 chr3:9965627 stopgain 0.842 0 23 hm5C_associated_SNPs_94701 0 0 1 12 9965620 9965641 mRNA hsa-miR-520c-3p IL17RC miRanda miRanda
7627 chr3 9965627 9965627 1 + G T BLCA 9965625 + 9965605 9965645 41 GCATCTGGTTCTGAATGTCTCTGAGGAGCAGCACTTCGGCC GCATCTGGTTCTGAATGTCTCTTAGGAGCAGCACTTCGGCC < 41bp 0.704525498966517 0.366330405409376 0.26326472 0.058918744 prediction 0.409050997933033 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9965625 chr3:9965627 stopgain 0.842 0 23 hm5C_associated_SNPs_94701 0 0 1 12 9965620 9965641 mRNA hsa-miR-520d-3p IL17RC miRanda miRanda
7628 chr3 9965627 9965627 1 + G T BLCA 9965625 + 9965605 9965645 41 GCATCTGGTTCTGAATGTCTCTGAGGAGCAGCACTTCGGCC GCATCTGGTTCTGAATGTCTCTTAGGAGCAGCACTTCGGCC < 41bp 0.704525498966517 0.366330405409376 0.26326472 0.058918744 prediction 0.409050997933033 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9965625 chr3:9965627 stopgain 0.842 0 23 hm5C_associated_SNPs_94701 0 0 1 12 9965625 9965641 mRNA hsa-miR-302e IL17RC miRanda miRanda
7629 chr17 25636248 25636248 1 + T C UCEC 25636247 + 25636227 25636267 41 GGCTACTGCATCTTATGATACTCGAGTATATATCTGGGATC GGCTACTGCATCTTATGATACCCGAGTATATATCTGGGATC < 41bp 0.822166117005344 0.617652589529619 0.25671786 0.2773863 prediction 0.40902705495145 Functional Loss - WSB1 ENSG00000109046 CDS Human protein_coding chr17:25636247 chr17:25636248 synonymous SNV . 0 22 hm5C_associated_SNPs_94718 0 0 1 1 25636229 25636250 mRNA hsa-miR-496 WSB1 miRanda miRanda
7630 chr19 49631724 49631724 1 + G A LUSC 49631721 + 49631701 49631741 41 GAAGGCGGAACGGAACAACACGCGGGTGAGGGGTGTTGAGG GAAGGCGGAACGGAACAACACGCAGGTGAGGGGTGTTGAGG < 41bp 0.820716840534192 0.616239656139728 0.8193995 0.29334563 prediction 0.408954368788927 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49631721 chr19:49631724 nonsynonymous SNV 0.874 3 24 hm5C_associated_SNPs_94746 0 0 0 1 49631720 49631725 mRNA hsa-miR-199a-5p PPFIA3 miRanda miRanda
7631 chr5 121786681 121786681 1 + C T SKCM 121786678 + 121786658 121786698 41 GAAAGCGTAGAGAGTATGGACAGCGCAGAAAGCCTGCACCT GAAAGCGTAGAGAGTATGGACAGTGCAGAAAGCCTGCACCT < 41bp 0.704468202133666 0.489166938437954 0.11293012 0.045377314 prediction 0.408936404267333 Functional Loss - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786678 chr5:121786681 synonymous SNV . 0 24 hm5C_associated_SNPs_94753 0 0 0 1 121786678 121786700 mRNA hsa-miR-125a-3p SNCAIP miRanda miRanda
7632 chr17 42248210 42248210 1 + T C UCEC 42248209 + 42248189 42248229 41 CCATGCTGCGCTCTCTCCGCCTGCAGCAGGAGTGGCTGGAA CCATGCTGCGCTCTCTCCGCCCGCAGCAGGAGTGGCTGGAA < 41bp 0.812513287815401 0.608158121370808 0.2200791 0.1295189 prediction 0.408710332889186 Functional Loss - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42248209 chr17:42248210 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_94858 0 0 0 1 42248197 42248219 mRNA hsa-miR-370 ASB16 miRanda miRanda
7633 chr8 27645464 27645464 1 + A C rs57479434 27645463 + 27645443 27645483 41 TCATGAAACAGACCAATATCCAGAAAAATACTAATACCAGA TCATGAAACAGACCAATATCCCGAAAAATACTAATACCAGA < 41bp 0.704284409289292 0.439530675924214 0.509272 0.11807865 prediction 0.408568818578584 Functional Loss - ESCO2 ENSG00000171320 CDS Human protein_coding chr8:27645463 chr8:27645464 nonsynonymous SNV 0.034 0 22 hm5C_associated_SNPs_94922 1 0 0 1 27645463 27645485 mRNA hsa-miR-330-5p ESCO2 miRanda miRanda
7634 chr4 15556832 15556832 1 + C T COAD 15556830 + 15556810 15556850 41 GCCCCTTTGATGCAGCTTATCTCGGTATGTAGCAGGAGGCA GCCCCTTTGATGCAGCTTATCTTGGTATGTAGCAGGAGGCA < 41bp 0.704253995794125 0.424202743840106 0.09934902 0.049994767 prediction 0.40850799158825 Functional Loss - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15556830 chr4:15556832 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_94960 1 0 0 1 15556829 15556833 mRNA hsa-miR-197 CC2D2A miRanda miRanda
7635 chr17 52993166 52993166 1 + C T LUSC 52993163 + 52993143 52993183 41 ATGAATGTGCGAGTGATGTCCGCCATATTGATGGAGAATAC ATGAATGTGCGAGTGATGTCCGCTATATTGATGGAGAATAC < 41bp 0.792228907613816 0.58803862670658 0.25070727 0.27607745 prediction 0.408380561814474 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52993163 chr17:52993166 synonymous SNV . 0 24 hm5C_associated_SNPs_95024 0 0 1 2 52993157 52993179 mRNA hsa-miR-136 TOM1L1 miRanda miRanda
7636 chr17 52993166 52993166 1 + C T LUSC 52993163 + 52993143 52993183 41 ATGAATGTGCGAGTGATGTCCGCCATATTGATGGAGAATAC ATGAATGTGCGAGTGATGTCCGCTATATTGATGGAGAATAC < 41bp 0.792228907613816 0.58803862670658 0.25070727 0.27607745 prediction 0.408380561814474 Functional Loss - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52993163 chr17:52993166 synonymous SNV . 0 24 hm5C_associated_SNPs_95024 0 0 1 2 52993166 52993186 mRNA hsa-miR-496 TOM1L1 miRanda miRanda
7637 chr16 50756540 50756540 1 + G C rs2066845 50756536 + 50756516 50756556 41 TCTTTTGGCCTTTTCAGATTCTGGGGCAACAGAGTGGGTGA TCTTTTGGCCTTTTCAGATTCTGGCGCAACAGAGTGGGTGA < 41bp 0.876260082252273 0.672149853556098 0.9017616 0.5627723 prediction 0.40822045739235 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50756536 chr16:50756540 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_95092 5 1 0 1 50756535 50756557 mRNA hsa-miR-197 NOD2 miRanda miRanda
7638 chr13 75130665 75130665 1 + G A rs573915903 75130662 + 75130642 75130682 41 ATTTCTGATGCCATAACTTACTCGATGTGGGATTTGGACAA ATTTCTGATGCCATAACTTACTCAATGTGGGATTTGGACAA < 41bp 0.765014882878981 0.560915519600464 0.86330104 0.68633425 prediction 0.408198726557034 Functional Loss - LINC00347 ENSG00000236678 ncRNA_exonic Human lincRNA chr13:75130662 chr13:75130665 . . 0 24 hm5C_associated_SNPs_95101 0 0 0 1 75130663 75130686 mRNA hsa-miR-219-5p LOC338864 miRanda miRanda
7639 chrX 47583123 47583123 1 + C T rs764711094 47583121 + 47583101 47583141 41 GGCAAACAGCAGGCTGTGTGCACGGATTACTAGGCGAGAGG GGCAAACAGCAGGCTGTGTGCATGGATTACTAGGCGAGAGG < 41bp 0.84175170634934 0.637683790636494 0.20641655 0.21578032 prediction 0.408135831425693 Functional Loss - CXXC1P1 ENSG00000187893 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:47583121 chrX:47583123 . . 0 23 hm5C_associated_SNPs_95137 0 0 0 1 47583120 47583147 mRNA hsa-miR-365 NCRNA00236 miRanda miRanda
7640 chr15 92459421 92459421 1 + G A STAD 92459418 + 92459398 92459438 41 GCGCGCTGCTGTCGGCGCTGCCCGAGTTCCTGACCCACCAG GCGCGCTGCTGTCGGCGCTGCCCAAGTTCCTGACCCACCAG < 41bp 0.831152448448538 0.627107217504238 0.87801325 0.60830563 prediction 0.4080904618886 Functional Loss - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92459418 chr15:92459421 nonsynonymous SNV 0.973 4 24 hm5C_associated_SNPs_95156 0 0 1 1 92459409 92459430 mRNA hsa-miR-873 SLCO3A1 miRanda miRanda
7641 chr15 22332675 22332675 1 + G T COAD 22332673 + 22332653 22332693 41 TGTTAGGGGATTTCCTACAGCAGGGCAAGAGCATCTCTTTT TGTTAGGGGATTTCCTACAGCATGGCAAGAGCATCTCTTTT < 41bp 0.70398890068391 0.38620393583053 0.9222646 0.3891892 prediction 0.40797780136782 Functional Loss - LINC02203 ENSG00000259176 ncRNA_exonic Human other chr15:22332673 chr15:22332675 . . 0 23 hm5C_associated_SNPs_95210 0 0 0 2 22332656 22332677 mRNA hsa-miR-370 LOC727924 miRanda miRanda
7642 chr15 22332675 22332675 1 + G T COAD 22332673 + 22332653 22332693 41 TGTTAGGGGATTTCCTACAGCAGGGCAAGAGCATCTCTTTT TGTTAGGGGATTTCCTACAGCATGGCAAGAGCATCTCTTTT < 41bp 0.70398890068391 0.38620393583053 0.9222646 0.3891892 prediction 0.40797780136782 Functional Loss - LINC02203 ENSG00000259176 ncRNA_exonic Human other chr15:22332673 chr15:22332675 . . 0 23 hm5C_associated_SNPs_95210 0 0 0 2 22332660 22332680 mRNA hsa-miR-874 LOC727924 miRanda miRanda
7643 chr13 70713404 70713404 1 + G T UCEC 70713400 + 70713380 70713420 41 TTTCTGACTCCCAGCTTCCACGGAGAGATTAACTCTGTTGG TTTCTGACTCCCAGCTTCCACGGATAGATTAACTCTGTTGG < 41bp 0.703978032728084 0.498789415707012 0.80640715 0.24285093 prediction 0.407956065456168 Functional Loss - ATXN8OS ENSG00000230223 ncRNA_exonic Human antisense chr13:70713400 chr13:70713404 . . 0 25 hm5C_associated_SNPs_95224 0 0 0 1 70713389 70713410 mRNA hsa-miR-216b ATXN8OS miRanda miRanda
7644 chr20 58558110 58558110 1 + G T LUSC 58558107 + 58558087 58558127 41 AGGAATTTAACATCACTGTGCAAGAAAACCAATCTGCAGGT AGGAATTTAACATCACTGTGCAATAAAACCAATCTGCAGGT < 41bp 0.703972392180899 0.310092111958727 0.3684138 0.3846333 prediction 0.407944784361799 Functional Loss - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58558107 chr20:58558110 stopgain 0.410 0 24 hm5C_associated_SNPs_95234 0 0 0 1 58558109 58558125 mRNA hsa-miR-874 CDH26 miRanda miRanda
7645 chr7 74565462 74565462 1 + G A rs376877244 74565459 + 74565439 74565479 41 CTCACAAAGTGCTGGGATTACAGGCATGAACCACTGTGCCC CTCACAAAGTGCTGGGATTACAGACATGAACCACTGTGCCC < 41bp 0.716902637400189 0.512958067316227 0.3860669 0.2497366 prediction 0.407889140167925 Functional Loss - GTF2IRD2;GTF2IRD2B ENSG00000174428 UTR3 Human protein_coding chr7:74565459 chr7:74565462 . . 0 24 hm5C_associated_SNPs_95258 0 0 0 1 74565453 74565474 mRNA hsa-miR-140-5p GTF2IRD2B miRanda miRanda
7646 chr19 7744156 7744156 1 + G A rs111420062 7744153 + 7744133 7744173 41 GAGTCATGGTGAATGAGTGTCTCGGAGTTGCTCGTGTGTGT GAGTCATGGTGAATGAGTGTCTCAGAGTTGCTCGTGTGTGT < 41bp 0.799407393417653 0.595545716654158 0.19118279 0.1448305 prediction 0.407723353526988 Functional Loss - MCEMP1 ENSG00000183019 UTR3 Human protein_coding chr19:7744153 chr19:7744156 . . 0 24 hm5C_associated_SNPs_95356 0 0 0 2 7744133 7744156 mRNA hsa-miR-146a C19orf59 miRanda miRanda
7647 chr19 7744156 7744156 1 + G A rs111420062 7744153 + 7744133 7744173 41 GAGTCATGGTGAATGAGTGTCTCGGAGTTGCTCGTGTGTGT GAGTCATGGTGAATGAGTGTCTCAGAGTTGCTCGTGTGTGT < 41bp 0.799407393417653 0.595545716654158 0.19118279 0.1448305 prediction 0.407723353526988 Functional Loss - MCEMP1 ENSG00000183019 UTR3 Human protein_coding chr19:7744153 chr19:7744156 . . 0 24 hm5C_associated_SNPs_95356 0 0 0 2 7744133 7744156 mRNA hsa-miR-146b-5p C19orf59 miRanda miRanda
7648 chr16 20476935 20476935 1 + C T ACC 20476932 + 20476912 20476952 41 GAGAACTGAGTGAAAACAGCCAGCAGGCAGCCAACGTCCTC GAGAACTGAGTGAAAACAGCCAGTAGGCAGCCAACGTCCTC < 41bp 0.753567471334125 0.549727376953351 0.72597265 0.70039606 prediction 0.407680188761548 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20476932 chr16:20476935 stopgain 0.558 0 24 hm5C_associated_SNPs_95383 0 0 0 2 20476913 20476936 mRNA hsa-miR-138 ACSM2A miRanda miRanda
7649 chr16 20476935 20476935 1 + C T ACC 20476932 + 20476912 20476952 41 GAGAACTGAGTGAAAACAGCCAGCAGGCAGCCAACGTCCTC GAGAACTGAGTGAAAACAGCCAGTAGGCAGCCAACGTCCTC < 41bp 0.753567471334125 0.549727376953351 0.72597265 0.70039606 prediction 0.407680188761548 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20476932 chr16:20476935 stopgain 0.558 0 24 hm5C_associated_SNPs_95383 0 0 0 2 20476918 20476939 mRNA hsa-miR-370 ACSM2A miRanda miRanda
7650 chr20 2636749 2636749 1 + G A rs140275178 2636746 + 2636726 2636766 41 CCCACTGCTTGTTGGGGGATCACGGTGATGGCTGACCAGGG CCCACTGCTTGTTGGGGGATCACAGTGATGGCTGACCAGGG < 41bp 0.802538171837985 0.598741606196621 0.8276502 0.42162037 prediction 0.407593131282727 Functional Loss - SNORD86 ENSG00000212498 ncRNA_exonic Human snoRNA chr20:2636746 chr20:2636749 . . 0 24 hm5C_associated_SNPs_95432 0 0 1 1 2636748 2636770 mRNA hsa-miR-504 SNORD86 miRanda miRanda
7651 chr22 25160712 25160712 1 + C T rs142675256 25160710 + 25160690 25160730 41 ACTCACTGCAACCTCAACCTCCCGGGCTCAAGAAATCCTCC ACTCACTGCAACCTCAACCTCCTGGGCTCAAGAAATCCTCC < 41bp 0.763258448589301 0.559487797851672 0.040551186 0.030156523 prediction 0.407541301475258 Functional Loss - TOP1P2 ENSG00000184571 intronic Human protein_coding chr22:25160710 chr22:25160712 . . 0 23 hm5C_associated_SNPs_95450 0 0 0 1 25160707 25160728 mRNA hsa-miR-876-5p TOP1P2 miRanda miRanda
7652 chr6 52530142 52530142 1 + C T UCEC 52530139 + 52530119 52530159 41 TGAAGAGGTCGTGGACCATCCCCCAAAATGAATCCCAACAC TGAAGAGGTCGTGGACCATCCCCTAAAATGAATCCCAACAC < 41bp 0.703755504794929 0.483746747066337 0.10849911 0.11597112 prediction 0.407511009589859 Functional Loss - LOC730101 ENSG00000216775 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:52530139 chr6:52530142 . . 0 24 hm5C_associated_SNPs_95464 0 0 1 2 52530141 52530163 mRNA hsa-miR-199a-5p LOC730101 miRanda miRanda
7653 chr6 52530142 52530142 1 + C T UCEC 52530139 + 52530119 52530159 41 TGAAGAGGTCGTGGACCATCCCCCAAAATGAATCCCAACAC TGAAGAGGTCGTGGACCATCCCCTAAAATGAATCCCAACAC < 41bp 0.703755504794929 0.483746747066337 0.10849911 0.11597112 prediction 0.407511009589859 Functional Loss - LOC730101 ENSG00000216775 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:52530139 chr6:52530142 . . 0 24 hm5C_associated_SNPs_95464 0 0 1 2 52530140 52530163 mRNA hsa-miR-199b-5p LOC730101 miRanda miRanda
7654 chrX 153664162 153664162 1 + G T LUSC 153664159 + 153664139 153664179 41 ATCTTCACCTATGGCCTGCACATGATCCTCAGCCTCAAGAC ATCTTCACCTATGGCCTGCACATTATCCTCAGCCTCAAGAC < 41bp 0.703735498354077 0.295807800739867 0.044924527 0.025409102 prediction 0.407470996708154 Functional Loss - ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153664159 chrX:153664162 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_95486 0 0 1 1 153664154 153664175 mRNA hsa-miR-485-5p ATP6AP1 miRanda miRanda
7655 chr12 1756075 1756075 1 + G A rs117320738 1756072 + 1756052 1756092 41 AGCGAGAATTCTTCATCCTCCACGGTTCACTAGCTCCTACC AGCGAGAATTCTTCATCCTCCACAGTTCACTAGCTCCTACC < 41bp 0.774511777441719 0.570778554449919 0.3005147 0.05849433 prediction 0.407466445983599 Functional Loss - WNT5B ENSG00000111186 UTR3 Human protein_coding chr12:1756072 chr12:1756075 . . 0 24 hm5C_associated_SNPs_95490 0 0 0 3 1756072 1756090 mRNA hsa-miR-28-5p WNT5B miRanda miRanda
7656 chr12 1756075 1756075 1 + G A rs117320738 1756072 + 1756052 1756092 41 AGCGAGAATTCTTCATCCTCCACGGTTCACTAGCTCCTACC AGCGAGAATTCTTCATCCTCCACAGTTCACTAGCTCCTACC < 41bp 0.774511777441719 0.570778554449919 0.3005147 0.05849433 prediction 0.407466445983599 Functional Loss - WNT5B ENSG00000111186 UTR3 Human protein_coding chr12:1756072 chr12:1756075 . . 0 24 hm5C_associated_SNPs_95490 0 0 0 3 1756057 1756079 mRNA hsa-miR-490-3p WNT5B miRanda miRanda
7657 chr12 1756075 1756075 1 + G A rs117320738 1756072 + 1756052 1756092 41 AGCGAGAATTCTTCATCCTCCACGGTTCACTAGCTCCTACC AGCGAGAATTCTTCATCCTCCACAGTTCACTAGCTCCTACC < 41bp 0.774511777441719 0.570778554449919 0.3005147 0.05849433 prediction 0.407466445983599 Functional Loss - WNT5B ENSG00000111186 UTR3 Human protein_coding chr12:1756072 chr12:1756075 . . 0 24 hm5C_associated_SNPs_95490 0 0 0 3 1756068 1756090 mRNA hsa-miR-708 WNT5B miRanda miRanda
7658 chr4 158254422 158254422 1 + G T UCEC 158254420 + 158254400 158254440 41 GGTTCAGGTTGAAGGTCTCTCAGGAAATATAAAGTTTGACC GGTTCAGGTTGAAGGTCTCTCATGAAATATAAAGTTTGACC < 41bp 0.703667880442685 0.383603226924164 0.07991254 0.016568989 prediction 0.40733576088537 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158254420 chr4:158254422 stopgain 0.998 1 23 hm5C_associated_SNPs_95549 0 0 0 3 158254401 158254425 mRNA hsa-miR-125b GRIA2 miRanda miRanda
7659 chr4 158254422 158254422 1 + G T UCEC 158254420 + 158254400 158254440 41 GGTTCAGGTTGAAGGTCTCTCAGGAAATATAAAGTTTGACC GGTTCAGGTTGAAGGTCTCTCATGAAATATAAAGTTTGACC < 41bp 0.703667880442685 0.383603226924164 0.07991254 0.016568989 prediction 0.40733576088537 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158254420 chr4:158254422 stopgain 0.998 1 23 hm5C_associated_SNPs_95549 0 0 0 3 158254401 158254425 mRNA hsa-miR-125a-5p GRIA2 miRanda miRanda
7660 chr4 158254422 158254422 1 + G T UCEC 158254420 + 158254400 158254440 41 GGTTCAGGTTGAAGGTCTCTCAGGAAATATAAAGTTTGACC GGTTCAGGTTGAAGGTCTCTCATGAAATATAAAGTTTGACC < 41bp 0.703667880442685 0.383603226924164 0.07991254 0.016568989 prediction 0.40733576088537 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158254420 chr4:158254422 stopgain 0.998 1 23 hm5C_associated_SNPs_95549 0 0 0 3 158254407 158254426 mRNA hsa-miR-384 GRIA2 miRanda miRanda
7661 chrX 77378727 77378727 1 + G A LUSC 77378724 + 77378704 77378744 41 CTGTTTGATGAAGAGGGAGCCAAGATTGTCAAAGACCTAAT CTGTTTGATGAAGAGGGAGCCAAAATTGTCAAAGACCTAAT < 41bp 0.782956787782157 0.579298364789829 0.31515872 0.07394627 prediction 0.407316845984657 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378724 chrX:77378727 synonymous SNV . 0 24 hm5C_associated_SNPs_95557 0 0 1 2 77378704 77378727 mRNA hsa-miR-133a PGK1 miRanda miRanda
7662 chrX 77378727 77378727 1 + G A LUSC 77378724 + 77378704 77378744 41 CTGTTTGATGAAGAGGGAGCCAAGATTGTCAAAGACCTAAT CTGTTTGATGAAGAGGGAGCCAAAATTGTCAAAGACCTAAT < 41bp 0.782956787782157 0.579298364789829 0.31515872 0.07394627 prediction 0.407316845984657 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378724 chrX:77378727 synonymous SNV . 0 24 hm5C_associated_SNPs_95557 0 0 1 2 77378704 77378727 mRNA hsa-miR-133b PGK1 miRanda miRanda
7663 chr10 89472955 89472955 1 + G C LAML 89472951 + 89472931 89472971 41 GTCATGGCCTTAACAGAAATCTCGGATTCTCTCCTGGGGAC GTCATGGCCTTAACAGAAATCTCGCATTCTCTCCTGGGGAC < 41bp 0.879183926014164 0.675681157377362 0.41014785 0.16449496 prediction 0.407005537273603 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89472951 chr10:89472955 nonsynonymous SNV 0.939 3 25 hm5C_associated_SNPs_95719 0 0 0 1 89472943 89472965 mRNA hsa-miR-185 PAPSS2 miRanda miRanda
7664 chr1 15888817 15888817 1 + A C GBM 15888816 + 15888796 15888836 41 TGAGGCGTTTCAAGGGAAATCAGCGGTAAGCCACAGAGTCT TGAGGCGTTTCAAGGGAAATCCGCGGTAAGCCACAGAGTCT < 41bp 0.703474074056252 0.434543612403221 0.8853878 0.843944 prediction 0.406948148112503 Functional Loss - DNAJC16 ENSG00000116138 CDS Human protein_coding chr1:15888816 chr1:15888817 synonymous SNV . 0 22 hm5C_associated_SNPs_95745 0 0 0 1 15888805 15888820 mRNA hsa-miR-425 DNAJC16 miRanda miRanda
7665 chr1 15888819 15888819 1 + C T UCEC 15888816 + 15888796 15888836 41 TGAGGCGTTTCAAGGGAAATCAGCGGTAAGCCACAGAGTCT TGAGGCGTTTCAAGGGAAATCAGTGGTAAGCCACAGAGTCT < 41bp 0.703474074056252 0.491368407775319 0.8853878 0.7889494 prediction 0.406948148112503 Functional Loss - DNAJC16 ENSG00000116138 CDS Human protein_coding chr1:15888816 chr1:15888819 nonsynonymous SNV 0.103 0 24 hm5C_associated_SNPs_95746 0 0 0 1 15888805 15888820 mRNA hsa-miR-425 DNAJC16 miRanda miRanda
7666 chr1 167341272 167341272 1 + G T LUAD 167341269 + 167341249 167341289 41 GCTAGCTGGAGGACAGATAACTGGGGTAAGTGTTCACTGAG GCTAGCTGGAGGACAGATAACTGTGGTAAGTGTTCACTGAG < 41bp 0.703447166959854 0.396906379509849 0.9100052 0.42083314 prediction 0.406894333919708 Functional Loss - POU2F1 ENSG00000143190 CDS Human protein_coding chr1:167341269 chr1:167341272 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_95779 0 0 1 2 167341262 167341273 mRNA hsa-miR-26a POU2F1 miRanda miRanda
7667 chr1 167341272 167341272 1 + G T LUAD 167341269 + 167341249 167341289 41 GCTAGCTGGAGGACAGATAACTGGGGTAAGTGTTCACTGAG GCTAGCTGGAGGACAGATAACTGTGGTAAGTGTTCACTGAG < 41bp 0.703447166959854 0.396906379509849 0.9100052 0.42083314 prediction 0.406894333919708 Functional Loss - POU2F1 ENSG00000143190 CDS Human protein_coding chr1:167341269 chr1:167341272 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_95779 0 0 1 2 167341263 167341273 mRNA hsa-miR-26b POU2F1 miRanda miRanda
7668 chr19 58864791 58864791 1 + C T UCEC 58864789 + 58864769 58864809 41 CCCCACAGCAAGAGAAAGACCACGAGCATGGACATGATGGT CCCCACAGCAAGAGAAAGACCATGAGCATGGACATGATGGT < 41bp 0.846737849335081 0.643291251054128 0.23237789 0.16105151 prediction 0.406893196561906 Functional Loss - A1BG ENSG00000121410 CDS Human protein_coding chr19:58864789 chr19:58864791 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_95780 0 0 1 1 58864770 58864793 mRNA hsa-miR-187 NCRNA00181 miRanda miRanda
7669 chr1 236646366 236646366 1 + G A rs189781826 236646363 + 236646343 236646383 41 CTCCTGATCAGTGCCATTCCCACGGTTTCAAAGAAAACAGC CTCCTGATCAGTGCCATTCCCACAGTTTCAAAGAAAACAGC < 41bp 0.703404063577353 0.463408389875312 0.28948036 0.14802852 prediction 0.406808127154705 Functional Loss - EDARADD ENSG00000186197 UTR3 Human protein_coding chr1:236646363 chr1:236646366 . . 0 24 hm5C_associated_SNPs_95818 1 0 0 1 236646364 236646387 mRNA hsa-miR-142-3p EDARADD miRanda miRanda
7670 chr14 23846561 23846561 1 + A T LUAD 23846559 + 23846539 23846579 41 AAGGCCTTCCTCACCTCCCACAAGGGCATCCTGCTGGAAAC AAGGCCTTCCTCACCTCCCACATGGGCATCCTGCTGGAAAC < 41bp 0.72315751270353 0.519787501800298 0.61959606 0.31853318 prediction 0.406740021806463 Functional Loss - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23846559 chr14:23846561 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_95860 0 0 0 1 23846554 23846575 mRNA hsa-miR-214 CMTM5 miRanda miRanda
7671 chr2 231174699 231174699 1 + A C BLCA 231174695 + 231174675 231174715 41 GGAGGGGAGCTGTTCTGTTGCGACACTTGTTCAAGAGTCTT GGAGGGGAGCTGTTCTGTTGCGACCCTTGTTCAAGAGTCTT < 41bp 0.703340723124823 0.286676314656254 0.3444702 0.12230921 prediction 0.406681446249647 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231174695 chr2:231174699 nonsynonymous SNV 0.009 4 25 hm5C_associated_SNPs_95894 0 0 0 1 231174696 231174718 mRNA hsa-miR-7 SP140 miRanda miRanda
7672 chr16 71406132 71406132 1 + G A SKCM 71406129 + 71406109 71406149 41 AAGGCAAGGAAAGGCTCTGGCATGGTAAGCCCAGCCCTGTC AAGGCAAGGAAAGGCTCTGGCATAGTAAGCCCAGCCCTGTC < 41bp 0.703335754828242 0.455620669817597 0.41405082 0.14681163 prediction 0.406671509656483 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71406129 chr16:71406132 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_95899 0 0 0 1 71406132 71406132 mRNA hsa-miR-382 CALB2 miRanda miRanda
7673 chr12 125621367 125621367 1 + C T OV 125621364 + 125621344 125621384 41 CGCCATCCGCATGGGCTTGTCTGCGCGACACGTGCCCAGCC CGCCATCCGCATGGGCTTGTCTGTGCGACACGTGCCCAGCC < 41bp 0.777234767456142 0.573970349152522 0.5053317 0.33113724 prediction 0.40652883660724 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125621364 chr12:125621367 nonsynonymous SNV 0.949 2 24 hm5C_associated_SNPs_95968 0 0 0 1 125621367 125621387 mRNA hsa-miR-485-5p AACS miRanda miRanda
7674 chr10 101611589 101611589 1 + C T rs150176505 101611587 + 101611567 101611607 41 GAAACCCCTCGATTGTCTACCTCGATCGTACTTCCTTGCTA GAAACCCCTCGATTGTCTACCTTGATCGTACTTCCTTGCTA < 41bp 0.755136788382792 0.551890072322445 0.41981235 0.14446652 prediction 0.406493432120695 Functional Loss - ABCC2 ENSG00000023839 UTR3 Human protein_coding chr10:101611587 chr10:101611589 . . 0 23 hm5C_associated_SNPs_95982 0 0 1 9 101611569 101611590 mRNA hsa-let-7a ABCC2 miRanda miRanda
7675 chr10 101611589 101611589 1 + C T rs150176505 101611587 + 101611567 101611607 41 GAAACCCCTCGATTGTCTACCTCGATCGTACTTCCTTGCTA GAAACCCCTCGATTGTCTACCTTGATCGTACTTCCTTGCTA < 41bp 0.755136788382792 0.551890072322445 0.41981235 0.14446652 prediction 0.406493432120695 Functional Loss - ABCC2 ENSG00000023839 UTR3 Human protein_coding chr10:101611587 chr10:101611589 . . 0 23 hm5C_associated_SNPs_95982 0 0 1 9 101611569 101611590 mRNA hsa-let-7b ABCC2 miRanda miRanda
7676 chr10 101611589 101611589 1 + C T rs150176505 101611587 + 101611567 101611607 41 GAAACCCCTCGATTGTCTACCTCGATCGTACTTCCTTGCTA GAAACCCCTCGATTGTCTACCTTGATCGTACTTCCTTGCTA < 41bp 0.755136788382792 0.551890072322445 0.41981235 0.14446652 prediction 0.406493432120695 Functional Loss - ABCC2 ENSG00000023839 UTR3 Human protein_coding chr10:101611587 chr10:101611589 . . 0 23 hm5C_associated_SNPs_95982 0 0 1 9 101611570 101611590 mRNA hsa-let-7c ABCC2 miRanda miRanda
7677 chr10 101611589 101611589 1 + C T rs150176505 101611587 + 101611567 101611607 41 GAAACCCCTCGATTGTCTACCTCGATCGTACTTCCTTGCTA GAAACCCCTCGATTGTCTACCTTGATCGTACTTCCTTGCTA < 41bp 0.755136788382792 0.551890072322445 0.41981235 0.14446652 prediction 0.406493432120695 Functional Loss - ABCC2 ENSG00000023839 UTR3 Human protein_coding chr10:101611587 chr10:101611589 . . 0 23 hm5C_associated_SNPs_95982 0 0 1 9 101611569 101611590 mRNA hsa-let-7d ABCC2 miRanda miRanda
7678 chr10 101611589 101611589 1 + C T rs150176505 101611587 + 101611567 101611607 41 GAAACCCCTCGATTGTCTACCTCGATCGTACTTCCTTGCTA GAAACCCCTCGATTGTCTACCTTGATCGTACTTCCTTGCTA < 41bp 0.755136788382792 0.551890072322445 0.41981235 0.14446652 prediction 0.406493432120695 Functional Loss - ABCC2 ENSG00000023839 UTR3 Human protein_coding chr10:101611587 chr10:101611589 . . 0 23 hm5C_associated_SNPs_95982 0 0 1 9 101611569 101611590 mRNA hsa-let-7e ABCC2 miRanda miRanda
7679 chr10 101611589 101611589 1 + C T rs150176505 101611587 + 101611567 101611607 41 GAAACCCCTCGATTGTCTACCTCGATCGTACTTCCTTGCTA GAAACCCCTCGATTGTCTACCTTGATCGTACTTCCTTGCTA < 41bp 0.755136788382792 0.551890072322445 0.41981235 0.14446652 prediction 0.406493432120695 Functional Loss - ABCC2 ENSG00000023839 UTR3 Human protein_coding chr10:101611587 chr10:101611589 . . 0 23 hm5C_associated_SNPs_95982 0 0 1 9 101611569 101611590 mRNA hsa-let-7f ABCC2 miRanda miRanda
7680 chr10 101611589 101611589 1 + C T rs150176505 101611587 + 101611567 101611607 41 GAAACCCCTCGATTGTCTACCTCGATCGTACTTCCTTGCTA GAAACCCCTCGATTGTCTACCTTGATCGTACTTCCTTGCTA < 41bp 0.755136788382792 0.551890072322445 0.41981235 0.14446652 prediction 0.406493432120695 Functional Loss - ABCC2 ENSG00000023839 UTR3 Human protein_coding chr10:101611587 chr10:101611589 . . 0 23 hm5C_associated_SNPs_95982 0 0 1 9 101611569 101611590 mRNA hsa-miR-98 ABCC2 miRanda miRanda
7681 chr10 101611589 101611589 1 + C T rs150176505 101611587 + 101611567 101611607 41 GAAACCCCTCGATTGTCTACCTCGATCGTACTTCCTTGCTA GAAACCCCTCGATTGTCTACCTTGATCGTACTTCCTTGCTA < 41bp 0.755136788382792 0.551890072322445 0.41981235 0.14446652 prediction 0.406493432120695 Functional Loss - ABCC2 ENSG00000023839 UTR3 Human protein_coding chr10:101611587 chr10:101611589 . . 0 23 hm5C_associated_SNPs_95982 0 0 1 9 101611568 101611590 mRNA hsa-let-7g ABCC2 miRanda miRanda
7682 chr10 101611589 101611589 1 + C T rs150176505 101611587 + 101611567 101611607 41 GAAACCCCTCGATTGTCTACCTCGATCGTACTTCCTTGCTA GAAACCCCTCGATTGTCTACCTTGATCGTACTTCCTTGCTA < 41bp 0.755136788382792 0.551890072322445 0.41981235 0.14446652 prediction 0.406493432120695 Functional Loss - ABCC2 ENSG00000023839 UTR3 Human protein_coding chr10:101611587 chr10:101611589 . . 0 23 hm5C_associated_SNPs_95982 0 0 1 9 101611569 101611590 mRNA hsa-let-7i ABCC2 miRanda miRanda
7683 chr1 67685299 67685299 1 + G T STAD 67685297 + 67685277 67685317 41 TTTTACATATGTGCAACAGTCAGAATTCTACTTGGAGCCAA TTTTACATATGTGCAACAGTCATAATTCTACTTGGAGCCAA < 41bp 0.703207009842487 0.413705519841887 0.30656785 0.09491265 prediction 0.406414019684974 Functional Loss - IL23R ENSG00000162594 CDS Human protein_coding chr1:67685297 chr1:67685299 stopgain 0.996 0 23 hm5C_associated_SNPs_96022 0 0 1 2 67685280 67685300 mRNA hsa-miR-134 IL23R miRanda miRanda
7684 chr1 67685299 67685299 1 + G T STAD 67685297 + 67685277 67685317 41 TTTTACATATGTGCAACAGTCAGAATTCTACTTGGAGCCAA TTTTACATATGTGCAACAGTCATAATTCTACTTGGAGCCAA < 41bp 0.703207009842487 0.413705519841887 0.30656785 0.09491265 prediction 0.406414019684974 Functional Loss - IL23R ENSG00000162594 CDS Human protein_coding chr1:67685297 chr1:67685299 stopgain 0.996 0 23 hm5C_associated_SNPs_96022 0 0 1 2 67685296 67685318 mRNA hsa-miR-149 IL23R miRanda miRanda
7685 chr6 30881130 30881130 1 + G A STAD 30881127 + 30881107 30881147 41 ATCACCGACCAGATCCGGCTCTGGGAGCTGGAAAGGGACAG ATCACCGACCAGATCCGGCTCTGAGAGCTGGAAAGGGACAG < 41bp 0.712480147592552 0.509277347111165 0.36222088 0.23673692 prediction 0.406405600962773 Functional Loss - GTF2H4 ENSG00000213780 CDS Human protein_coding chr6:30881127 chr6:30881130 stopgain 1.000 0 24 hm5C_associated_SNPs_96028 0 0 1 2 30881123 30881145 mRNA hsa-miR-204 GTF2H4 miRanda miRanda
7686 chr6 30881130 30881130 1 + G A STAD 30881127 + 30881107 30881147 41 ATCACCGACCAGATCCGGCTCTGGGAGCTGGAAAGGGACAG ATCACCGACCAGATCCGGCTCTGAGAGCTGGAAAGGGACAG < 41bp 0.712480147592552 0.509277347111165 0.36222088 0.23673692 prediction 0.406405600962773 Functional Loss - GTF2H4 ENSG00000213780 CDS Human protein_coding chr6:30881127 chr6:30881130 stopgain 1.000 0 24 hm5C_associated_SNPs_96028 0 0 1 2 30881125 30881145 mRNA hsa-miR-211 GTF2H4 miRanda miRanda
7687 chr7 21940794 21940794 1 - C A COAD 21940797 - 21940777 21940817 41 TCGCTCTTCAGCCTGAAGGTCCAGATGTAGCTGGGGCCTCT TCGCTCTTCAGCCTGAAGGTCCATATGTAGCTGGGGCCTCT < 41bp 0.703165014287452 0.35563658371322 0.23249859 0.025311083 prediction 0.406330028574905 Functional Loss - DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21940797 chr7:21940794 synonymous SNV . 0 24 hm5C_associated_SNPs_96062 0 0 1 2 21940786 21940811 mRNA hsa-miR-221 CDCA7L miRanda miRanda
7688 chr7 21940794 21940794 1 - C A COAD 21940797 - 21940777 21940817 41 TCGCTCTTCAGCCTGAAGGTCCAGATGTAGCTGGGGCCTCT TCGCTCTTCAGCCTGAAGGTCCATATGTAGCTGGGGCCTCT < 41bp 0.703165014287452 0.35563658371322 0.23249859 0.025311083 prediction 0.406330028574905 Functional Loss - DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21940797 chr7:21940794 synonymous SNV . 0 24 hm5C_associated_SNPs_96062 0 0 1 2 21940786 21940808 mRNA hsa-miR-222 CDCA7L miRanda miRanda
7689 chr13 24466084 24466084 1 + C T SKCM 24466081 + 24466061 24466101 41 CTGCCCCTGAGGCCCAGTCTCTCCTCGGAGGCCTTTCTCTC CTGCCCCTGAGGCCCAGTCTCTCTTCGGAGGCCTTTCTCTC < 41bp 0.744104845553095 0.540965426423375 0.06129265 0.07044047 prediction 0.406278838259439 Functional Loss - C1QTNF9B ENSG00000205863 CDS Human protein_coding chr13:24466081 chr13:24466084 nonsynonymous SNV 0.320 5 24 hm5C_associated_SNPs_96086 0 0 1 2 24466084 24466103 mRNA hsa-miR-185 PCOTH miRanda miRanda
7690 chr13 24466084 24466084 1 + C T SKCM 24466081 + 24466061 24466101 41 CTGCCCCTGAGGCCCAGTCTCTCCTCGGAGGCCTTTCTCTC CTGCCCCTGAGGCCCAGTCTCTCTTCGGAGGCCTTTCTCTC < 41bp 0.744104845553095 0.540965426423375 0.06129265 0.07044047 prediction 0.406278838259439 Functional Loss - C1QTNF9B ENSG00000205863 CDS Human protein_coding chr13:24466081 chr13:24466084 nonsynonymous SNV 0.320 5 24 hm5C_associated_SNPs_96086 0 0 1 2 24466071 24466085 mRNA hsa-miR-185 PCOTH miRanda miRanda
7691 chr2 27259421 27259421 1 + G A UCEC 27259418 + 27259398 27259438 41 GTCTCACCATCATGTGGGCCCTGGGTCAAGCAGGTTTTGCC GTCTCACCATCATGTGGGCCCTGAGTCAAGCAGGTTTTGCC < 41bp 0.70312890050754 0.450039137583411 0.24202141 0.1639581 prediction 0.40625780101508 Functional Loss - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27259418 chr2:27259421 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_96098 0 0 1 1 27259415 27259441 mRNA hsa-miR-182 TMEM214 miRanda miRanda
7692 chr2 24239106 24239106 1 + C T BLCA 24239103 + 24239083 24239123 41 GCTGACCCTGTGGCTGGGTTCTTCATCAACAGGAGCCAGAG GCTGACCCTGTGGCTGGGTTCTTTATCAACAGGAGCCAGAG < 41bp 0.703065867666647 0.481460618671218 0.31048006 0.1656327 prediction 0.406131735333293 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24239103 chr2:24239106 synonymous SNV . 0 24 hm5C_associated_SNPs_96157 0 0 1 1 24239101 24239122 mRNA hsa-miR-149 MFSD2B miRanda miRanda
7693 chr2 162751283 162751283 1 + G A SKCM 162751280 + 162751260 162751300 41 TCAGGTTACTGTTCTCCCTCCTGGAGAATGGGATCCAAGCA TCAGGTTACTGTTCTCCCTCCTGAAGAATGGGATCCAAGCA < 41bp 0.703060274349246 0.466263212668411 0.10678768 0.035886645 prediction 0.406120548698492 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162751280 chr2:162751283 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_96163 0 0 0 2 162751277 162751298 mRNA hsa-miR-133a SLC4A10 miRanda miRanda
7694 chr2 162751283 162751283 1 + G A SKCM 162751280 + 162751260 162751300 41 TCAGGTTACTGTTCTCCCTCCTGGAGAATGGGATCCAAGCA TCAGGTTACTGTTCTCCCTCCTGAAGAATGGGATCCAAGCA < 41bp 0.703060274349246 0.466263212668411 0.10678768 0.035886645 prediction 0.406120548698492 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162751280 chr2:162751283 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_96163 0 0 0 2 162751277 162751298 mRNA hsa-miR-133b SLC4A10 miRanda miRanda
7695 chr8 144826962 144826962 1 + C T rs77365846 144826959 + 144826939 144826979 41 TGCCGTAACAACCCTTACTCCTCCGGCCAAGGAGCCAATGT TGCCGTAACAACCCTTACTCCTCTGGCCAAGGAGCCAATGT < 41bp 0.703331913961456 0.500298824304235 0.13679165 0.045036674 prediction 0.406066179314441 Functional Loss - FAM83H-AS1 ENSG00000203499 ncRNA_exonic Human protein_coding chr8:144826959 chr8:144826962 . . 0 24 hm5C_associated_SNPs_96194 0 0 0 1 144826961 144826984 mRNA hsa-miR-221 LOC100128338 miRanda miRanda
7696 chr1 45808537 45808537 1 + C T STAD 45808534 + 45808514 45808554 41 GTGAACGGGAAAATGGGAAGCAGCGGGCAGCTGGCAGCCCA GTGAACGGGAAAATGGGAAGCAGTGGGCAGCTGGCAGCCCA < 41bp 0.726634743354605 0.523607449691693 0.75553095 0.7831091 prediction 0.406054587325824 Functional Loss - TOE1 ENSG00000132773 CDS Human protein_coding chr1:45808534 chr1:45808537 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_96201 0 0 1 1 45808525 45808546 mRNA hsa-miR-22 TOE1 miRanda miRanda
7697 chr4 159174648 159174648 1 + G A STAD 159174645 + 159174625 159174665 41 TGCATTTTGCATCATCTTGACTGGAGCCTTATGCACTGCTT TGCATTTTGCATCATCTTGACTGAAGCCTTATGCACTGCTT < 41bp 0.77304037348948 0.570045294224351 0.15996063 0.022282302 prediction 0.405990158530258 Functional Loss - TMEM144 ENSG00000164124 CDS Human protein_coding chr4:159174645 chr4:159174648 nonsynonymous SNV 0.915 3 24 hm5C_associated_SNPs_96234 0 0 0 4 159174632 159174653 mRNA hsa-miR-24 TMEM144 miRanda miRanda
7698 chr4 159174648 159174648 1 + G A STAD 159174645 + 159174625 159174665 41 TGCATTTTGCATCATCTTGACTGGAGCCTTATGCACTGCTT TGCATTTTGCATCATCTTGACTGAAGCCTTATGCACTGCTT < 41bp 0.77304037348948 0.570045294224351 0.15996063 0.022282302 prediction 0.405990158530258 Functional Loss - TMEM144 ENSG00000164124 CDS Human protein_coding chr4:159174645 chr4:159174648 nonsynonymous SNV 0.915 3 24 hm5C_associated_SNPs_96234 0 0 0 4 159174644 159174663 mRNA hsa-miR-148a TMEM144 miRanda miRanda
7699 chr4 159174648 159174648 1 + G A STAD 159174645 + 159174625 159174665 41 TGCATTTTGCATCATCTTGACTGGAGCCTTATGCACTGCTT TGCATTTTGCATCATCTTGACTGAAGCCTTATGCACTGCTT < 41bp 0.77304037348948 0.570045294224351 0.15996063 0.022282302 prediction 0.405990158530258 Functional Loss - TMEM144 ENSG00000164124 CDS Human protein_coding chr4:159174645 chr4:159174648 nonsynonymous SNV 0.915 3 24 hm5C_associated_SNPs_96234 0 0 0 4 159174643 159174663 mRNA hsa-miR-152 TMEM144 miRanda miRanda
7700 chr4 159174648 159174648 1 + G A STAD 159174645 + 159174625 159174665 41 TGCATTTTGCATCATCTTGACTGGAGCCTTATGCACTGCTT TGCATTTTGCATCATCTTGACTGAAGCCTTATGCACTGCTT < 41bp 0.77304037348948 0.570045294224351 0.15996063 0.022282302 prediction 0.405990158530258 Functional Loss - TMEM144 ENSG00000164124 CDS Human protein_coding chr4:159174645 chr4:159174648 nonsynonymous SNV 0.915 3 24 hm5C_associated_SNPs_96234 0 0 0 4 159174642 159174663 mRNA hsa-miR-148b TMEM144 miRanda miRanda
7701 chr18 9859341 9859341 1 + C T rs149147951 9859339 + 9859319 9859359 41 TTGACCCAAGGGCCGTGGTCCACGGTACTTGAAGAAGCCAG TTGACCCAAGGGCCGTGGTCCATGGTACTTGAAGAAGCCAG < 41bp 0.825888894613826 0.622906535295203 0.19071269 0.096236855 prediction 0.405964718637245 Functional Loss - RAB31 ENSG00000168461 UTR3 Human protein_coding chr18:9859339 chr18:9859341 . . 0 23 hm5C_associated_SNPs_96250 0 0 1 3 9859331 9859351 mRNA hsa-miR-26a RAB31 miRanda miRanda
7702 chr18 9859341 9859341 1 + C T rs149147951 9859339 + 9859319 9859359 41 TTGACCCAAGGGCCGTGGTCCACGGTACTTGAAGAAGCCAG TTGACCCAAGGGCCGTGGTCCATGGTACTTGAAGAAGCCAG < 41bp 0.825888894613826 0.622906535295203 0.19071269 0.096236855 prediction 0.405964718637245 Functional Loss - RAB31 ENSG00000168461 UTR3 Human protein_coding chr18:9859339 chr18:9859341 . . 0 23 hm5C_associated_SNPs_96250 0 0 1 3 9859332 9859351 mRNA hsa-miR-26b RAB31 miRanda miRanda
7703 chr18 9859341 9859341 1 + C T rs149147951 9859339 + 9859319 9859359 41 TTGACCCAAGGGCCGTGGTCCACGGTACTTGAAGAAGCCAG TTGACCCAAGGGCCGTGGTCCATGGTACTTGAAGAAGCCAG < 41bp 0.825888894613826 0.622906535295203 0.19071269 0.096236855 prediction 0.405964718637245 Functional Loss - RAB31 ENSG00000168461 UTR3 Human protein_coding chr18:9859339 chr18:9859341 . . 0 23 hm5C_associated_SNPs_96250 0 0 1 3 9859335 9859351 mRNA hsa-miR-1297 RAB31 miRanda miRanda
7704 chr9 71555681 71555681 1 + G A READ 71555678 + 71555658 71555698 41 ACGTCAATGAGCACTATCCACACGACAGGCCTACACTCTAT ACGTCAATGAGCACTATCCACACAACAGGCCTACACTCTAT < 41bp 0.79658839579267 0.593668800568096 0.0641278 0.14060897 prediction 0.405839190449148 Functional Loss - PIP5K1B ENSG00000107242 CDS Human protein_coding chr9:71555678 chr9:71555681 nonsynonymous SNV 0.350 0 24 hm5C_associated_SNPs_96304 0 0 0 2 71555673 71555696 mRNA hsa-let-7b PIP5K1B miRanda miRanda
7705 chr9 71555681 71555681 1 + G A READ 71555678 + 71555658 71555698 41 ACGTCAATGAGCACTATCCACACGACAGGCCTACACTCTAT ACGTCAATGAGCACTATCCACACAACAGGCCTACACTCTAT < 41bp 0.79658839579267 0.593668800568096 0.0641278 0.14060897 prediction 0.405839190449148 Functional Loss - PIP5K1B ENSG00000107242 CDS Human protein_coding chr9:71555678 chr9:71555681 nonsynonymous SNV 0.350 0 24 hm5C_associated_SNPs_96304 0 0 0 2 71555673 71555696 mRNA hsa-let-7c PIP5K1B miRanda miRanda
7706 chr6 47649054 47649054 1 + G A COAD 47649051 + 47649031 47649071 41 AACAGCAAAAGCATCTCCAACTGGACTTTCATTCCTGACAG AACAGCAAAAGCATCTCCAACTGAACTTTCATTCCTGACAG < 41bp 0.800956224487479 0.59803904890078 0.6798436 0.17070508 prediction 0.405834351173398 Functional Loss - ADGRF2 ENSG00000164393 CDS Human protein_coding chr6:47649051 chr6:47649054 stopgain 0.998 1 24 hm5C_associated_SNPs_96306 0 0 0 1 47649034 47649056 mRNA hsa-miR-145 GPR111 miRanda miRanda
7707 chr8 15480708 15480708 1 + G A CESC 15480705 + 15480685 15480725 41 GCACCACCTCGAAACTATTCCATGATTGTTATGTTCACTGC GCACCACCTCGAAACTATTCCATAATTGTTATGTTCACTGC < 41bp 0.702811298447888 0.467471483127777 0.24793863 0.15915 prediction 0.405622596895777 Functional Loss - TUSC3 ENSG00000104723 CDS Human protein_coding chr8:15480705 chr8:15480708 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_96421 0 0 1 4 15480705 15480727 mRNA hsa-miR-34a TUSC3 miRanda miRanda
7708 chr8 15480708 15480708 1 + G A CESC 15480705 + 15480685 15480725 41 GCACCACCTCGAAACTATTCCATGATTGTTATGTTCACTGC GCACCACCTCGAAACTATTCCATAATTGTTATGTTCACTGC < 41bp 0.702811298447888 0.467471483127777 0.24793863 0.15915 prediction 0.405622596895777 Functional Loss - TUSC3 ENSG00000104723 CDS Human protein_coding chr8:15480705 chr8:15480708 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_96421 0 0 1 4 15480706 15480727 mRNA hsa-miR-34c-5p TUSC3 miRanda miRanda
7709 chr8 15480708 15480708 1 + G A CESC 15480705 + 15480685 15480725 41 GCACCACCTCGAAACTATTCCATGATTGTTATGTTCACTGC GCACCACCTCGAAACTATTCCATAATTGTTATGTTCACTGC < 41bp 0.702811298447888 0.467471483127777 0.24793863 0.15915 prediction 0.405622596895777 Functional Loss - TUSC3 ENSG00000104723 CDS Human protein_coding chr8:15480705 chr8:15480708 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_96421 0 0 1 4 15480705 15480727 mRNA hsa-miR-449a TUSC3 miRanda miRanda
7710 chr8 15480708 15480708 1 + G A CESC 15480705 + 15480685 15480725 41 GCACCACCTCGAAACTATTCCATGATTGTTATGTTCACTGC GCACCACCTCGAAACTATTCCATAATTGTTATGTTCACTGC < 41bp 0.702811298447888 0.467471483127777 0.24793863 0.15915 prediction 0.405622596895777 Functional Loss - TUSC3 ENSG00000104723 CDS Human protein_coding chr8:15480705 chr8:15480708 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_96421 0 0 1 4 15480705 15480727 mRNA hsa-miR-449b TUSC3 miRanda miRanda
7711 chr1 227842159 227842159 1 + T C rs151083594 227842158 + 227842138 227842178 41 AATTTGCACTTAGTGAAAGACTGGAGAACTGTGAATGAAGG AATTTGCACTTAGTGAAAGACCGGAGAACTGTGAATGAAGG < 41bp 0.702794205042036 0.476506229249933 0.19088256 0.2625432 prediction 0.405588410084072 Functional Loss - ZNF678 ENSG00000181450 CDS Human protein_coding chr1:227842158 chr1:227842159 nonsynonymous SNV 0.011 0 22 hm5C_associated_SNPs_96439 0 0 1 4 227842152 227842172 mRNA hsa-miR-27a ZNF678 miRanda miRanda
7712 chr1 227842159 227842159 1 + T C rs151083594 227842158 + 227842138 227842178 41 AATTTGCACTTAGTGAAAGACTGGAGAACTGTGAATGAAGG AATTTGCACTTAGTGAAAGACCGGAGAACTGTGAATGAAGG < 41bp 0.702794205042036 0.476506229249933 0.19088256 0.2625432 prediction 0.405588410084072 Functional Loss - ZNF678 ENSG00000181450 CDS Human protein_coding chr1:227842158 chr1:227842159 nonsynonymous SNV 0.011 0 22 hm5C_associated_SNPs_96439 0 0 1 4 227842159 227842177 mRNA hsa-miR-205 ZNF678 miRanda miRanda
7713 chr1 227842159 227842159 1 + T C rs151083594 227842158 + 227842138 227842178 41 AATTTGCACTTAGTGAAAGACTGGAGAACTGTGAATGAAGG AATTTGCACTTAGTGAAAGACCGGAGAACTGTGAATGAAGG < 41bp 0.702794205042036 0.476506229249933 0.19088256 0.2625432 prediction 0.405588410084072 Functional Loss - ZNF678 ENSG00000181450 CDS Human protein_coding chr1:227842158 chr1:227842159 nonsynonymous SNV 0.011 0 22 hm5C_associated_SNPs_96439 0 0 1 4 227842152 227842172 mRNA hsa-miR-27b ZNF678 miRanda miRanda
7714 chr1 227842159 227842159 1 + T C rs151083594 227842158 + 227842138 227842178 41 AATTTGCACTTAGTGAAAGACTGGAGAACTGTGAATGAAGG AATTTGCACTTAGTGAAAGACCGGAGAACTGTGAATGAAGG < 41bp 0.702794205042036 0.476506229249933 0.19088256 0.2625432 prediction 0.405588410084072 Functional Loss - ZNF678 ENSG00000181450 CDS Human protein_coding chr1:227842158 chr1:227842159 nonsynonymous SNV 0.011 0 22 hm5C_associated_SNPs_96439 0 0 1 4 227842150 227842172 mRNA hsa-miR-145 ZNF678 miRanda miRanda
7715 chr10 1089597 1089597 1 + G A rs183296678 1089594 + 1089574 1089614 41 CCTATCAAGGACATTCAGTTCTCGGAAAGTGGTGAAGGCAC CCTATCAAGGACATTCAGTTCTCAGAAAGTGGTGAAGGCAC < 41bp 0.785019284376803 0.582243692815762 0.35931683 0.13491523 prediction 0.405551183122083 Functional Loss - IDI2-AS1 ENSG00000232656 ncRNA_exonic Human antisense chr10:1089594 chr10:1089597 . . 0 24 hm5C_associated_SNPs_96450 0 0 0 1 1089588 1089609 mRNA hsa-miR-197 C10orf110 miRanda miRanda
7716 chr11 113851995 113851995 1 + C T UCEC 113851993 + 113851973 113852013 41 ATCACCAAGTTGTCCATCCCCACGGACAGCATCTGGGTCCC ATCACCAAGTTGTCCATCCCCATGGACAGCATCTGGGTCCC < 41bp 0.872184997710276 0.669439932670195 0.08724946 0.04606691 prediction 0.405490130080161 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113851993 chr11:113851995 nonsynonymous SNV 0.769 3 23 hm5C_associated_SNPs_96479 0 0 0 1 113851975 113851996 mRNA hsa-miR-491-5p HTR3A miRanda miRanda
7717 chr5 68737605 68737605 1 + G C rs535297949 68737601 + 68737581 68737621 41 CTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTCCT CTCACTGCAACCTCCACCTCCCGGCTTCAAGCAATTCTCCT < 41bp 0.702732513975006 0.404175283263484 0.18850797 0.050763518 prediction 0.405465027950011 Functional Loss - MARVELD2 ENSG00000152939 UTR3 Human protein_coding chr5:68737601 chr5:68737605 . . 0 25 hm5C_associated_SNPs_96491 0 0 0 1 68737605 68737627 mRNA hsa-miR-488 MARVELD2 miRanda miRanda
7718 chr7 135312781 135312781 1 + G T UCEC 135312778 + 135312758 135312798 41 ACCCCAGTGGATCGCTACCGCCAGATTCTCCTCCCAGCTCT ACCCCAGTGGATCGCTACCGCCATATTCTCCTCCCAGCTCT < 41bp 0.702674874730685 0.30751877902711 0.8724965 0.8037709 prediction 0.405349749461371 Functional Loss - NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312778 chr7:135312781 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_96534 0 0 1 1 135312780 135312800 mRNA hsa-miR-485-5p NUP205 miRanda miRanda
7719 chr8 6614836 6614836 1 + G A SKCM 6614833 + 6614813 6614853 41 AGGCATGCTTATGACCGATGCTGGAAGGAAGCTGTATGTGA AGGCATGCTTATGACCGATGCTGAAAGGAAGCTGTATGTGA < 41bp 0.778936412459778 0.576267845141892 0.16577318 0.18785745 prediction 0.405337134635771 Functional Loss - AGPAT5 ENSG00000155189 CDS Human protein_coding chr8:6614833 chr8:6614836 nonsynonymous SNV 0.877 4 24 hm5C_associated_SNPs_96539 0 0 1 1 6614816 6614837 mRNA hsa-miR-338-3p AGPAT5 miRanda miRanda
7720 chr11 66282000 66282000 1 + G T UCEC 66281996 + 66281976 66282016 41 GCTGCTGCTGCCACCTTCCTCATGGAGCAACATGAGCCCCG GCTGCTGCTGCCACCTTCCTCATGTAGCAACATGAGCCCCG < 41bp 0.740178620162669 0.537539505219339 0.89307755 0.7652101 prediction 0.40527822988666 Functional Loss - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66281996 chr11:66282000 stopgain 0.996 0 25 hm5C_associated_SNPs_96575 0 0 1 1 66281988 66282014 mRNA hsa-miR-24 BBS1 miRanda miRanda
7721 chr21 47988420 47988420 1 + G A rs115448966 47988417 + 47988397 47988437 41 CACTCCAGCCTGGGTGACAGCACGAGATGCCGTCTTAAAAA CACTCCAGCCTGGGTGACAGCACAAGATGCCGTCTTAAAAA < 41bp 0.785932559780372 0.583297733746242 0.31718457 0.19338056 prediction 0.405269652068259 Functional Loss - DIP2A ENSG00000160305 UTR3 Human protein_coding chr21:47988417 chr21:47988420 . . 0 24 hm5C_associated_SNPs_96580 0 0 0 2 47988414 47988434 mRNA hsa-miR-208a DIP2A miRanda miRanda
7722 chr21 47988420 47988420 1 + G A rs115448966 47988417 + 47988397 47988437 41 CACTCCAGCCTGGGTGACAGCACGAGATGCCGTCTTAAAAA CACTCCAGCCTGGGTGACAGCACAAGATGCCGTCTTAAAAA < 41bp 0.785932559780372 0.583297733746242 0.31718457 0.19338056 prediction 0.405269652068259 Functional Loss - DIP2A ENSG00000160305 UTR3 Human protein_coding chr21:47988417 chr21:47988420 . . 0 24 hm5C_associated_SNPs_96580 0 0 0 2 47988413 47988434 mRNA hsa-miR-208b DIP2A miRanda miRanda
7723 chr18 21095924 21095924 1 + G A rs7245127 21095921 + 21095901 21095941 41 GCCGTGATCTTGCTGTCTACCACGGTCCTGGAGAATGTCCT GCCGTGATCTTGCTGTCTACCACAGTCCTGGAGAATGTCCT < 41bp 0.817799478979789 0.615202919333511 0.12546837 0.111416906 prediction 0.405193119292556 Functional Loss - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21095921 chr18:21095924 synonymous SNV . 0 24 hm5C_associated_SNPs_96614 0 0 0 2 21095920 21095944 mRNA hsa-miR-103 C18orf8 miRanda miRanda
7724 chr18 21095924 21095924 1 + G A rs7245127 21095921 + 21095901 21095941 41 GCCGTGATCTTGCTGTCTACCACGGTCCTGGAGAATGTCCT GCCGTGATCTTGCTGTCTACCACAGTCCTGGAGAATGTCCT < 41bp 0.817799478979789 0.615202919333511 0.12546837 0.111416906 prediction 0.405193119292556 Functional Loss - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21095921 chr18:21095924 synonymous SNV . 0 24 hm5C_associated_SNPs_96614 0 0 0 2 21095920 21095944 mRNA hsa-miR-107 C18orf8 miRanda miRanda
7725 chr19 55324750 55324750 1 + G T UCEC 55324746 + 55324726 55324766 41 GCGGAAGCAGGATGGGAGCACGCAGGTGTGTGTTCCTCACT GCGGAAGCAGGATGGGAGCACGCATGTGTGTGTTCCTCACT < 41bp 0.702542961216417 0.498436179106994 0.3053975 0.41958344 prediction 0.405085922432835 Functional Loss - KIR2DL4 ENSG00000189013 CDS Human protein_coding chr19:55324746 chr19:55324750 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_96672 0 0 0 6 55324738 55324750 mRNA hsa-miR-15a KIR2DL4 miRanda miRanda
7726 chr19 55324750 55324750 1 + G T UCEC 55324746 + 55324726 55324766 41 GCGGAAGCAGGATGGGAGCACGCAGGTGTGTGTTCCTCACT GCGGAAGCAGGATGGGAGCACGCATGTGTGTGTTCCTCACT < 41bp 0.702542961216417 0.498436179106994 0.3053975 0.41958344 prediction 0.405085922432835 Functional Loss - KIR2DL4 ENSG00000189013 CDS Human protein_coding chr19:55324746 chr19:55324750 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_96672 0 0 0 6 55324738 55324750 mRNA hsa-miR-16 KIR2DL4 miRanda miRanda
7727 chr19 55324750 55324750 1 + G T UCEC 55324746 + 55324726 55324766 41 GCGGAAGCAGGATGGGAGCACGCAGGTGTGTGTTCCTCACT GCGGAAGCAGGATGGGAGCACGCATGTGTGTGTTCCTCACT < 41bp 0.702542961216417 0.498436179106994 0.3053975 0.41958344 prediction 0.405085922432835 Functional Loss - KIR2DL4 ENSG00000189013 CDS Human protein_coding chr19:55324746 chr19:55324750 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_96672 0 0 0 6 55324737 55324750 mRNA hsa-miR-15b KIR2DL4 miRanda miRanda
7728 chr19 55324750 55324750 1 + G T UCEC 55324746 + 55324726 55324766 41 GCGGAAGCAGGATGGGAGCACGCAGGTGTGTGTTCCTCACT GCGGAAGCAGGATGGGAGCACGCATGTGTGTGTTCCTCACT < 41bp 0.702542961216417 0.498436179106994 0.3053975 0.41958344 prediction 0.405085922432835 Functional Loss - KIR2DL4 ENSG00000189013 CDS Human protein_coding chr19:55324746 chr19:55324750 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_96672 0 0 0 6 55324739 55324750 mRNA hsa-miR-195 KIR2DL4 miRanda miRanda
7729 chr19 55324750 55324750 1 + G T UCEC 55324746 + 55324726 55324766 41 GCGGAAGCAGGATGGGAGCACGCAGGTGTGTGTTCCTCACT GCGGAAGCAGGATGGGAGCACGCATGTGTGTGTTCCTCACT < 41bp 0.702542961216417 0.498436179106994 0.3053975 0.41958344 prediction 0.405085922432835 Functional Loss - KIR2DL4 ENSG00000189013 CDS Human protein_coding chr19:55324746 chr19:55324750 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_96672 0 0 0 6 55324737 55324750 mRNA hsa-miR-424 KIR2DL4 miRanda miRanda
7730 chr19 55324750 55324750 1 + G T UCEC 55324746 + 55324726 55324766 41 GCGGAAGCAGGATGGGAGCACGCAGGTGTGTGTTCCTCACT GCGGAAGCAGGATGGGAGCACGCATGTGTGTGTTCCTCACT < 41bp 0.702542961216417 0.498436179106994 0.3053975 0.41958344 prediction 0.405085922432835 Functional Loss - KIR2DL4 ENSG00000189013 CDS Human protein_coding chr19:55324746 chr19:55324750 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_96672 0 0 0 6 55324739 55324750 mRNA hsa-miR-497 KIR2DL4 miRanda miRanda
7731 chr19 11024678 11024678 1 + C T UCEC 11024675 + 11024655 11024695 41 CCCATGGGCTACATGCTCTTCAACGAGCGCATGCTGGAGAG CCCATGGGCTACATGCTCTTCAATGAGCGCATGCTGGAGAG < 41bp 0.708531714701864 0.506020756778351 0.20952544 0.31858665 prediction 0.405021915847025 Functional Loss - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11024675 chr19:11024678 synonymous SNV . 0 24 hm5C_associated_SNPs_96695 0 0 1 1 11024677 11024703 mRNA hsa-let-7i CARM1 miRanda miRanda
7732 chr8 65495014 65495014 1 + G A rs372391256 65495011 + 65494991 65495031 41 AATAAATTTTGATTCTGAGCCAGGAGAAAAACTTGAAATGT AATAAATTTTGATTCTGAGCCAGAAGAAAAACTTGAAATGT < 41bp 0.720895854728397 0.518453767331969 0.86442053 0.32572 prediction 0.404884174792857 Functional Loss - BHLHE22 ENSG00000180828 UTR3 Human protein_coding chr8:65495011 chr8:65495014 . . 0 24 hm5C_associated_SNPs_96761 0 0 0 1 65494992 65495014 mRNA hsa-miR-149 BHLHE22 miRanda miRanda
7733 chr19 41522905 41522905 1 + A C rs575089628 41522901 + 41522881 41522921 41 GGTCACATTGCAAGTGAGTGCAGGAGTGAGATTATCGAAAA GGTCACATTGCAAGTGAGTGCAGGCGTGAGATTATCGAAAA < 41bp 0.918911132259182 0.716545203921298 0.14148957 0.1488483 prediction 0.404731856675768 Functional Loss - CYP2B6 ENSG00000197408 UTR3 Human protein_coding chr19:41522901 chr19:41522905 . . 0 25 hm5C_associated_SNPs_96828 0 0 0 1 41522893 41522914 mRNA hsa-miR-216a CYP2B6 miRanda miRanda
7734 chr2 162751258 162751258 1 + G A LUSC 162751255 + 162751235 162751275 41 TATCAGGAATTGATGAGTTTCTGGATCAGGTTACTGTTCTC TATCAGGAATTGATGAGTTTCTGAATCAGGTTACTGTTCTC < 41bp 0.77833515766546 0.576021303064805 0.3878834 0.15793073 prediction 0.404627709201311 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162751255 chr2:162751258 stopgain 1.000 4 24 hm5C_associated_SNPs_96878 0 0 1 1 162751240 162751262 mRNA hsa-miR-383 SLC4A10 miRanda miRanda
7735 chr6 161530849 161530849 1 + G T LUAD 161530847 + 161530827 161530867 41 CTTTAGAAGAGGTGTCAAGGCTGGGACTTCAGGAACATGTG CTTTAGAAGAGGTGTCAAGGCTTGGACTTCAGGAACATGTG < 41bp 0.702309879621551 0.360341652157084 0.4301843 0.14051363 prediction 0.404619759243101 Functional Loss - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161530847 chr6:161530849 synonymous SNV . 0 23 hm5C_associated_SNPs_96885 0 0 1 2 161530847 161530869 mRNA hsa-miR-27a MAP3K4 miRanda miRanda
7736 chr6 161530849 161530849 1 + G T LUAD 161530847 + 161530827 161530867 41 CTTTAGAAGAGGTGTCAAGGCTGGGACTTCAGGAACATGTG CTTTAGAAGAGGTGTCAAGGCTTGGACTTCAGGAACATGTG < 41bp 0.702309879621551 0.360341652157084 0.4301843 0.14051363 prediction 0.404619759243101 Functional Loss - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161530847 chr6:161530849 synonymous SNV . 0 23 hm5C_associated_SNPs_96885 0 0 1 2 161530847 161530869 mRNA hsa-miR-27b MAP3K4 miRanda miRanda
7737 chr19 41097239 41097239 1 + G A rs149963122 41097236 + 41097216 41097256 41 GGAATAAATGGTTATTGTTACTAGGTCCCCACCTTCCCTCT GGAATAAATGGTTATTGTTACTAAGTCCCCACCTTCCCTCT < 41bp 0.796930088365539 0.594624179360137 0.45034805 0.2757606 prediction 0.404611818010804 Functional Loss - SHKBP1 ENSG00000160410 UTR3 Human protein_coding chr19:41097236 chr19:41097239 . . 0 24 hm5C_associated_SNPs_96891 0 0 1 1 41097225 41097248 mRNA hsa-miR-491-5p SHKBP1 miRanda miRanda
7738 chr4 1305894 1305894 1 + C T SKCM 1305892 + 1305872 1305912 41 AGCGGCTGCCCCGCCGTGGACTCCGTGGTCAGCCTGCTGGA AGCGGCTGCCCCGCCGTGGACTTCGTGGTCAGCCTGCTGGA < 41bp 0.870611830726191 0.66830656796634 0.38543546 0.35918027 prediction 0.404610525519703 Functional Loss - MAEA ENSG00000090316 CDS Human protein_coding chr4:1305892 chr4:1305894 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_96892 0 0 1 1 1305891 1305911 mRNA hsa-miR-214 MAEA miRanda miRanda
7739 chr8 22477436 22477436 1 + G A rs181551046 22477433 + 22477413 22477453 41 ATACAACATCTTTTGCACCCCTAGAATGTCATTTTGCCCTC ATACAACATCTTTTGCACCCCTAAAATGTCATTTTGCCCTC < 41bp 0.702302387817907 0.477278419769025 0.25385174 0.51876855 prediction 0.404604775635814 Functional Loss - CCAR2 ENSG00000158941 UTR3 Human protein_coding chr8:22477433 chr8:22477436 . . 0 24 hm5C_associated_SNPs_96896 0 0 1 1 22477420 22477443 mRNA hsa-miR-543 KIAA1967 miRanda miRanda
7740 chr18 72776432 72776432 1 + G A rs200753003 72776429 + 72776409 72776449 41 ACTCCAGGAAGCATGAGACGCGCGGCACCTTTACTCAGCAC ACTCCAGGAAGCATGAGACGCGCAGCACCTTTACTCAGCAC < 41bp 0.783289160025719 0.581001774337485 0.30345246 0.09157434 prediction 0.40457477137647 Functional Loss - ZNF407 ENSG00000215421 UTR3 Human protein_coding chr18:72776429 chr18:72776432 . . 0 24 hm5C_associated_SNPs_96909 0 0 0 2 72776425 72776440 mRNA hsa-miR-18a ZNF407 miRanda miRanda
7741 chr18 72776432 72776432 1 + G A rs200753003 72776429 + 72776409 72776449 41 ACTCCAGGAAGCATGAGACGCGCGGCACCTTTACTCAGCAC ACTCCAGGAAGCATGAGACGCGCAGCACCTTTACTCAGCAC < 41bp 0.783289160025719 0.581001774337485 0.30345246 0.09157434 prediction 0.40457477137647 Functional Loss - ZNF407 ENSG00000215421 UTR3 Human protein_coding chr18:72776429 chr18:72776432 . . 0 24 hm5C_associated_SNPs_96909 0 0 0 2 72776425 72776440 mRNA hsa-miR-18b ZNF407 miRanda miRanda
7742 chr4 119158324 119158324 1 + G A BLCA 119158321 + 119158301 119158341 41 GCTTCTCTGGTTCCCAAAGCCAAGATTATCACCATTCTCAT GCTTCTCTGGTTCCCAAAGCCAAAATTATCACCATTCTCAT < 41bp 0.794386163869198 0.592111091970149 0.05557567 0.039063424 prediction 0.404550143798099 Functional Loss - NDST3 ENSG00000164100 CDS Human protein_coding chr4:119158321 chr4:119158324 synonymous SNV . 0 24 hm5C_associated_SNPs_96921 0 0 0 2 119158302 119158324 mRNA hsa-miR-135a NDST3 miRanda miRanda
7743 chr4 119158324 119158324 1 + G A BLCA 119158321 + 119158301 119158341 41 GCTTCTCTGGTTCCCAAAGCCAAGATTATCACCATTCTCAT GCTTCTCTGGTTCCCAAAGCCAAAATTATCACCATTCTCAT < 41bp 0.794386163869198 0.592111091970149 0.05557567 0.039063424 prediction 0.404550143798099 Functional Loss - NDST3 ENSG00000164100 CDS Human protein_coding chr4:119158321 chr4:119158324 synonymous SNV . 0 24 hm5C_associated_SNPs_96921 0 0 0 2 119158302 119158324 mRNA hsa-miR-135b NDST3 miRanda miRanda
7744 chr2 66664968 66664968 1 + C T HNSC 66664965 + 66664945 66664985 41 CCAGGTCCATGCAGCCGGTCCACCACCTGAACCACGGGCCT CCAGGTCCATGCAGCCGGTCCACTACCTGAACCACGGGCCT < 41bp 0.702217239261691 0.477759200131629 0.07685736 0.07147923 prediction 0.404434478523381 Functional Loss - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66664965 chr2:66664968 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_96960 0 0 0 1 66664949 66664971 mRNA hsa-miR-491-5p MEIS1 miRanda miRanda
7745 chr22 32239728 32239728 1 + G A GBM 32239725 + 32239705 32239745 41 CCTGCTGGGTGGAATTCTCCCACGAACGGCTGGAGGAGTAC CCTGCTGGGTGGAATTCTCCCACAAACGGCTGGAGGAGTAC < 41bp 0.77861020326534 0.576413444200361 0.18240109 0.03681457 prediction 0.404393518129958 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32239725 chr22:32239728 nonsynonymous SNV 0.985 3 24 hm5C_associated_SNPs_96984 0 0 0 1 32239705 32239728 mRNA hsa-miR-491-5p DEPDC5 miRanda miRanda
7746 chr19 16244226 16244226 1 + G A rs1043407 16244223 + 16244203 16244243 41 GCGACTGGGACCAGGTCAACCACGCCAGGGGGGTGTCACCA GCGACTGGGACCAGGTCAACCACACCAGGGGGGTGTCACCA < 41bp 0.702165381272477 0.48339133252761 0.38846332 0.21040341 prediction 0.404330762544954 Functional Loss - RAB8A ENSG00000269243 ncRNA_exonic Human antisense chr19:16244223 chr19:16244226 . . 0 24 hm5C_associated_SNPs_97017 0 0 1 1 16244224 16244246 mRNA hsa-miR-138 RAB8A miRanda miRanda
7747 chr3 63601065 63601065 1 + A C rs192674665 63601064 + 63601044 63601084 41 CAAGACAGCTATGGATCAAGCAGTGGGTACAGTCAGCAGGC CAAGACAGCTATGGATCAAGCCGTGGGTACAGTCAGCAGGC < 41bp 0.702164981010323 0.454572330563294 0.24562925 0.24895662 prediction 0.404329962020647 Functional Loss - SYNPR ENSG00000163630 CDS Human protein_coding chr3:63601064 chr3:63601065 nonsynonymous SNV 0.326 1 22 hm5C_associated_SNPs_97019 0 0 0 1 63601064 63601084 mRNA hsa-miR-370 SYNPR miRanda miRanda
7748 chr1 35229142 35229142 1 + G A rs78592202 35229139 + 35229119 35229159 41 CACCCCCTCTGTGATCCTCCCTCGAACCTCTAGGACAGCTT CACCCCCTCTGTGATCCTCCCTCAAACCTCTAGGACAGCTT < 41bp 0.703421533044363 0.501279339425523 0.40239704 0.0155000985 prediction 0.404284387237679 Functional Loss - GJB4 ENSG00000255811 ncRNA_intronic Human antisense chr1:35229139 chr1:35229142 . . 0 24 hm5C_associated_SNPs_97039 0 0 0 2 35229141 35229161 mRNA hsa-miR-320a GJB4 miRanda miRanda
7749 chr1 35229142 35229142 1 + G A rs78592202 35229139 + 35229119 35229159 41 CACCCCCTCTGTGATCCTCCCTCGAACCTCTAGGACAGCTT CACCCCCTCTGTGATCCTCCCTCAAACCTCTAGGACAGCTT < 41bp 0.703421533044363 0.501279339425523 0.40239704 0.0155000985 prediction 0.404284387237679 Functional Loss - GJB4 ENSG00000255811 ncRNA_intronic Human antisense chr1:35229139 chr1:35229142 . . 0 24 hm5C_associated_SNPs_97039 0 0 0 2 35229141 35229161 mRNA hsa-miR-320b GJB4 miRanda miRanda
7750 chr8 36780088 36780088 1 + A T LUSC 36780084 + 36780064 36780104 41 CAAGAAACAAATCTGCATCTCAGCACTGCCTTTTCTACGGG CAAGAAACAAATCTGCATCTCAGCTCTGCCTTTTCTACGGG < 41bp 0.702128036978056 0.356967922613492 0.3070806 0.2040197 prediction 0.404256073956113 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36780084 chr8:36780088 nonsynonymous SNV 0.880 1 25 hm5C_associated_SNPs_97056 0 0 0 4 36780074 36780094 mRNA hsa-miR-34a KCNU1 miRanda miRanda
7751 chr8 36780088 36780088 1 + A T LUSC 36780084 + 36780064 36780104 41 CAAGAAACAAATCTGCATCTCAGCACTGCCTTTTCTACGGG CAAGAAACAAATCTGCATCTCAGCTCTGCCTTTTCTACGGG < 41bp 0.702128036978056 0.356967922613492 0.3070806 0.2040197 prediction 0.404256073956113 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36780084 chr8:36780088 nonsynonymous SNV 0.880 1 25 hm5C_associated_SNPs_97056 0 0 0 4 36780071 36780094 mRNA hsa-miR-34c-5p KCNU1 miRanda miRanda
7752 chr8 36780088 36780088 1 + A T LUSC 36780084 + 36780064 36780104 41 CAAGAAACAAATCTGCATCTCAGCACTGCCTTTTCTACGGG CAAGAAACAAATCTGCATCTCAGCTCTGCCTTTTCTACGGG < 41bp 0.702128036978056 0.356967922613492 0.3070806 0.2040197 prediction 0.404256073956113 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36780084 chr8:36780088 nonsynonymous SNV 0.880 1 25 hm5C_associated_SNPs_97056 0 0 0 4 36780074 36780094 mRNA hsa-miR-449a KCNU1 miRanda miRanda
7753 chr8 36780088 36780088 1 + A T LUSC 36780084 + 36780064 36780104 41 CAAGAAACAAATCTGCATCTCAGCACTGCCTTTTCTACGGG CAAGAAACAAATCTGCATCTCAGCTCTGCCTTTTCTACGGG < 41bp 0.702128036978056 0.356967922613492 0.3070806 0.2040197 prediction 0.404256073956113 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36780084 chr8:36780088 nonsynonymous SNV 0.880 1 25 hm5C_associated_SNPs_97056 0 0 0 4 36780074 36780094 mRNA hsa-miR-449b KCNU1 miRanda miRanda
7754 chr13 37582892 37582892 1 + G A UCEC 37582889 + 37582869 37582909 41 TTTGCTTATAGTTGACCCTACTGGAGAGGAGGAACATCTGG TTTGCTTATAGTTGACCCTACTGAAGAGGAGGAACATCTGG < 41bp 0.7750287147873 0.572945257280643 0.16401842 0.10560778 prediction 0.404166915013314 Functional Loss - EXOSC8 ENSG00000120699 CDS Human protein_coding chr13:37582889 chr13:37582892 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_97100 0 0 1 2 37582886 37582910 mRNA hsa-miR-199a-5p EXOSC8 miRanda miRanda
7755 chr13 37582892 37582892 1 + G A UCEC 37582889 + 37582869 37582909 41 TTTGCTTATAGTTGACCCTACTGGAGAGGAGGAACATCTGG TTTGCTTATAGTTGACCCTACTGAAGAGGAGGAACATCTGG < 41bp 0.7750287147873 0.572945257280643 0.16401842 0.10560778 prediction 0.404166915013314 Functional Loss - EXOSC8 ENSG00000120699 CDS Human protein_coding chr13:37582889 chr13:37582892 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_97100 0 0 1 2 37582887 37582910 mRNA hsa-miR-199b-5p EXOSC8 miRanda miRanda
7756 chr12 56365979 56365979 1 + G A rs2069415 56365976 + 56365956 56365996 41 CTGGGAGACTGAAGACTCAGCCCGGGTGGGGCTGCAGAAAA CTGGGAGACTGAAGACTCAGCCCAGGTGGGGCTGCAGAAAA < 41bp 0.820724569642695 0.61869868149459 0.40892014 0.20995447 prediction 0.404051776296211 Functional Loss - CDK2 ENSG00000123374 UTR3 Human protein_coding chr12:56365976 chr12:56365979 . . 0 24 hm5C_associated_SNPs_97156 0 0 1 1 56365974 56365995 mRNA hsa-miR-544 CDK2 miRanda miRanda
7757 chr5 169127112 169127112 1 + G A SKCM 169127109 + 169127089 169127129 41 GACAGGACCACCGTGGTGGCCAGGAAGCTGGGATTCCCAGA GACAGGACCACCGTGGTGGCCAGAAAGCTGGGATTCCCAGA < 41bp 0.742587583036991 0.540607768356574 0.562837 0.5387048 prediction 0.403959629360835 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127109 chr5:169127112 synonymous SNV . 0 24 hm5C_associated_SNPs_97209 0 0 1 2 169127106 169127131 mRNA hsa-miR-330-5p DOCK2 miRanda miRanda
7758 chr5 169127112 169127112 1 + G A SKCM 169127109 + 169127089 169127129 41 GACAGGACCACCGTGGTGGCCAGGAAGCTGGGATTCCCAGA GACAGGACCACCGTGGTGGCCAGAAAGCTGGGATTCCCAGA < 41bp 0.742587583036991 0.540607768356574 0.562837 0.5387048 prediction 0.403959629360835 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127109 chr5:169127112 synonymous SNV . 0 24 hm5C_associated_SNPs_97209 0 0 1 2 169127109 169127131 mRNA hsa-miR-326 DOCK2 miRanda miRanda
7759 chr6 116953397 116953397 1 + G A UCEC 116953394 + 116953374 116953414 41 TTTGAAAATTTCTACATAGGCTGGGGTCATAAGTATAGTCC TTTGAAAATTTCTACATAGGCTGAGGTCATAAGTATAGTCC < 41bp 0.780140661981477 0.57822681788922 0.23725694 0.056301355 prediction 0.403827688184514 Functional Loss - RSPH4A ENSG00000111834 CDS Human protein_coding chr6:116953394 chr6:116953397 stopgain 1.000 1 24 hm5C_associated_SNPs_97254 0 0 1 2 116953397 116953417 mRNA hsa-miR-378 RSPH4A miRanda miRanda
7760 chr6 116953397 116953397 1 + G A UCEC 116953394 + 116953374 116953414 41 TTTGAAAATTTCTACATAGGCTGGGGTCATAAGTATAGTCC TTTGAAAATTTCTACATAGGCTGAGGTCATAAGTATAGTCC < 41bp 0.780140661981477 0.57822681788922 0.23725694 0.056301355 prediction 0.403827688184514 Functional Loss - RSPH4A ENSG00000111834 CDS Human protein_coding chr6:116953394 chr6:116953397 stopgain 1.000 1 24 hm5C_associated_SNPs_97254 0 0 1 2 116953395 116953417 mRNA hsa-miR-422a RSPH4A miRanda miRanda
7761 chr16 67861894 67861894 1 + T C STAD 67861893 + 67861873 67861913 41 CGAGAGCCAGAGCCTGCAAGCTAGGAACTTGTGGGCAGCCT CGAGAGCCAGAGCCTGCAAGCCAGGAACTTGTGGGCAGCCT < 41bp 0.70188309543752 0.471405447302812 0.8749493 0.9041933 prediction 0.403766190875041 Functional Loss - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67861893 chr16:67861894 stoploss 0.722 0 22 hm5C_associated_SNPs_97278 0 0 0 1 67861881 67861900 mRNA hsa-miR-384 TSNAXIP1 miRanda miRanda
7762 chr16 2285300 2285300 1 + C T COAD 2285297 + 2285277 2285317 41 CAGATCATCGTGCAGAACGTCACCATGGACGAGGAGACGGC CAGATCATCGTGCAGAACGTCACTATGGACGAGGAGACGGC < 41bp 0.761692197247103 0.559932583911014 0.19232973 0.037487417 prediction 0.403519226672178 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2285297 chr16:2285300 synonymous SNV . 0 24 hm5C_associated_SNPs_97388 0 0 1 1 2285282 2285304 mRNA hsa-miR-125a-3p E4F1 miRanda miRanda
7763 chr1 173457376 173457376 1 + C T rs35364344 173457374 + 173457354 173457394 41 TTTTTTTTTAACTGTCCTATCACGTCCTCTCCTGTCACCCA TTTTTTTTTAACTGTCCTATCATGTCCTCTCCTGTCACCCA < 41bp 0.701659930436278 0.46428232132953 0.07066521 0.036369503 prediction 0.403319860872556 Functional Loss - PRDX6 ENSG00000117592 UTR3 Human protein_coding chr1:173457374 chr1:173457376 . . 0 23 hm5C_associated_SNPs_97470 0 0 1 1 173457371 173457392 mRNA hsa-miR-542-3p PRDX6 miRanda miRanda
7764 chr1 173457377 173457377 1 + G A rs112926420 173457374 + 173457354 173457394 41 TTTTTTTTTAACTGTCCTATCACGTCCTCTCCTGTCACCCA TTTTTTTTTAACTGTCCTATCACATCCTCTCCTGTCACCCA < 41bp 0.701659930436278 0.470909023846712 0.07066521 0.068790466 prediction 0.403319860872556 Functional Loss - PRDX6 ENSG00000117592 UTR3 Human protein_coding chr1:173457374 chr1:173457377 . . 0 24 hm5C_associated_SNPs_97471 0 0 1 1 173457371 173457392 mRNA hsa-miR-542-3p PRDX6 miRanda miRanda
7765 chr15 22368983 22368983 1 + G A SKCM 22368980 + 22368960 22369000 41 CCCCTCCACTATGCTACCATCATGAATCAACGTCTCTGCTG CCCCTCCACTATGCTACCATCATAAATCAACGTCTCTGCTG < 41bp 0.820363700971695 0.618708992393343 0.110610425 0.06825736 prediction 0.403309417156703 Functional Loss - OR4M2 ENSG00000182974 CDS Human protein_coding chr15:22368980 chr15:22368983 nonsynonymous SNV 0.897 2 24 hm5C_associated_SNPs_97475 0 0 0 1 22368964 22368985 mRNA hsa-miR-433 LOC727924 miRanda miRanda
7766 chr9 4664457 4664457 1 + T C rs55977885 4664456 + 4664436 4664476 41 ATACCAGGCACAAGATAAAACTCCAAAATTTCTGTTTACAT ATACCAGGCACAAGATAAAACCCCAAAATTTCTGTTTACAT < 41bp 0.75751255190772 0.55585872102235 0.9592205 0.08395645 prediction 0.403307661770741 Functional Loss - PLPP6 ENSG00000205808 UTR3 Human protein_coding chr9:4664456 chr9:4664457 . . 0 22 hm5C_associated_SNPs_97477 0 0 1 5 4664454 4664475 mRNA hsa-miR-30a PPAPDC2 miRanda miRanda
7767 chr9 4664457 4664457 1 + T C rs55977885 4664456 + 4664436 4664476 41 ATACCAGGCACAAGATAAAACTCCAAAATTTCTGTTTACAT ATACCAGGCACAAGATAAAACCCCAAAATTTCTGTTTACAT < 41bp 0.75751255190772 0.55585872102235 0.9592205 0.08395645 prediction 0.403307661770741 Functional Loss - PLPP6 ENSG00000205808 UTR3 Human protein_coding chr9:4664456 chr9:4664457 . . 0 22 hm5C_associated_SNPs_97477 0 0 1 5 4664453 4664475 mRNA hsa-miR-30c PPAPDC2 miRanda miRanda
7768 chr9 4664457 4664457 1 + T C rs55977885 4664456 + 4664436 4664476 41 ATACCAGGCACAAGATAAAACTCCAAAATTTCTGTTTACAT ATACCAGGCACAAGATAAAACCCCAAAATTTCTGTTTACAT < 41bp 0.75751255190772 0.55585872102235 0.9592205 0.08395645 prediction 0.403307661770741 Functional Loss - PLPP6 ENSG00000205808 UTR3 Human protein_coding chr9:4664456 chr9:4664457 . . 0 22 hm5C_associated_SNPs_97477 0 0 1 5 4664454 4664475 mRNA hsa-miR-30d PPAPDC2 miRanda miRanda
7769 chr9 4664457 4664457 1 + T C rs55977885 4664456 + 4664436 4664476 41 ATACCAGGCACAAGATAAAACTCCAAAATTTCTGTTTACAT ATACCAGGCACAAGATAAAACCCCAAAATTTCTGTTTACAT < 41bp 0.75751255190772 0.55585872102235 0.9592205 0.08395645 prediction 0.403307661770741 Functional Loss - PLPP6 ENSG00000205808 UTR3 Human protein_coding chr9:4664456 chr9:4664457 . . 0 22 hm5C_associated_SNPs_97477 0 0 1 5 4664454 4664475 mRNA hsa-miR-30b PPAPDC2 miRanda miRanda
7770 chr9 4664457 4664457 1 + T C rs55977885 4664456 + 4664436 4664476 41 ATACCAGGCACAAGATAAAACTCCAAAATTTCTGTTTACAT ATACCAGGCACAAGATAAAACCCCAAAATTTCTGTTTACAT < 41bp 0.75751255190772 0.55585872102235 0.9592205 0.08395645 prediction 0.403307661770741 Functional Loss - PLPP6 ENSG00000205808 UTR3 Human protein_coding chr9:4664456 chr9:4664457 . . 0 22 hm5C_associated_SNPs_97477 0 0 1 5 4664454 4664475 mRNA hsa-miR-30e PPAPDC2 miRanda miRanda
7771 chr12 2930439 2930439 1 + C T SKCM 2930436 + 2930416 2930456 41 TGCTGTGCACAGGGAGACCCCAGCTGCCCGAGACGTGGTGC TGCTGTGCACAGGGAGACCCCAGTTGCCCGAGACGTGGTGC < 41bp 0.754791050142497 0.553143286246435 0.15800717 0.18158358 prediction 0.403295527792125 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930436 chr12:2930439 nonsynonymous SNV 0.982 0 24 hm5C_associated_SNPs_97488 0 0 1 3 2930437 2930458 mRNA hsa-miR-29a ITFG2 miRanda miRanda
7772 chr12 2930439 2930439 1 + C T SKCM 2930436 + 2930416 2930456 41 TGCTGTGCACAGGGAGACCCCAGCTGCCCGAGACGTGGTGC TGCTGTGCACAGGGAGACCCCAGTTGCCCGAGACGTGGTGC < 41bp 0.754791050142497 0.553143286246435 0.15800717 0.18158358 prediction 0.403295527792125 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930436 chr12:2930439 nonsynonymous SNV 0.982 0 24 hm5C_associated_SNPs_97488 0 0 1 3 2930436 2930458 mRNA hsa-miR-29b ITFG2 miRanda miRanda
7773 chr12 2930439 2930439 1 + C T SKCM 2930436 + 2930416 2930456 41 TGCTGTGCACAGGGAGACCCCAGCTGCCCGAGACGTGGTGC TGCTGTGCACAGGGAGACCCCAGTTGCCCGAGACGTGGTGC < 41bp 0.754791050142497 0.553143286246435 0.15800717 0.18158358 prediction 0.403295527792125 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930436 chr12:2930439 nonsynonymous SNV 0.982 0 24 hm5C_associated_SNPs_97488 0 0 1 3 2930437 2930458 mRNA hsa-miR-29c ITFG2 miRanda miRanda
7774 chr14 24624494 24624494 1 + C T rs374641335 24624491 + 24624471 24624511 41 GCCTGTGGCCGCCCCGACCTCACCGATGACACACAGTTGCT GCCTGTGGCCGCCCCGACCTCACTGATGACACACAGTTGCT < 41bp 0.701630097652957 0.474295411133969 0.1888256 0.19610658 prediction 0.403260195305915 Functional Loss - RNF31 ENSG00000092098;ENSG00000259529 CDS Human other chr14:24624491 chr14:24624494 synonymous SNV . 0 24 hm5C_associated_SNPs_97504 0 0 1 2 24624491 24624513 mRNA hsa-miR-146a RNF31 miRanda miRanda
7775 chr14 24624494 24624494 1 + C T rs374641335 24624491 + 24624471 24624511 41 GCCTGTGGCCGCCCCGACCTCACCGATGACACACAGTTGCT GCCTGTGGCCGCCCCGACCTCACTGATGACACACAGTTGCT < 41bp 0.701630097652957 0.474295411133969 0.1888256 0.19610658 prediction 0.403260195305915 Functional Loss - RNF31 ENSG00000092098;ENSG00000259529 CDS Human other chr14:24624491 chr14:24624494 synonymous SNV . 0 24 hm5C_associated_SNPs_97504 0 0 1 2 24624491 24624513 mRNA hsa-miR-146b-5p RNF31 miRanda miRanda
7776 chr19 11894197 11894197 1 + C T rs115313675 11894195 + 11894175 11894215 41 GGAAAACAGTATGTAGATTTCTCAAAAACCTAAAAATAGAA GGAAAACAGTATGTAGATTTCTTAAAAACCTAAAAATAGAA < 41bp 0.701624510943854 0.482538913006206 0.24105722 0.072880745 prediction 0.403249021887708 Functional Loss - ZNF441 ENSG00000197044 UTR3 Human protein_coding chr19:11894195 chr19:11894197 . . 0 23 hm5C_associated_SNPs_97508 0 0 0 1 11894178 11894198 mRNA hsa-miR-539 ZNF441 miRanda miRanda
7777 chr1 182783967 182783967 1 + C T UCEC 182783964 + 182783944 182783984 41 TGATGGCATCGCTGTCATTGCACCGTTCTTCCTCAAGCCAT TGATGGCATCGCTGTCATTGCACTGTTCTTCCTCAAGCCAT < 41bp 0.758624403081082 0.557022365986975 0.14744115 0.0805856 prediction 0.403204074188215 Functional Loss - NPL ENSG00000135838 CDS Human protein_coding chr1:182783964 chr1:182783967 nonsynonymous SNV 0.947 5 24 hm5C_associated_SNPs_97530 0 0 0 2 182783963 182783985 mRNA hsa-miR-135a NPL miRanda miRanda
7778 chr1 182783967 182783967 1 + C T UCEC 182783964 + 182783944 182783984 41 TGATGGCATCGCTGTCATTGCACCGTTCTTCCTCAAGCCAT TGATGGCATCGCTGTCATTGCACTGTTCTTCCTCAAGCCAT < 41bp 0.758624403081082 0.557022365986975 0.14744115 0.0805856 prediction 0.403204074188215 Functional Loss - NPL ENSG00000135838 CDS Human protein_coding chr1:182783964 chr1:182783967 nonsynonymous SNV 0.947 5 24 hm5C_associated_SNPs_97530 0 0 0 2 182783963 182783985 mRNA hsa-miR-135b NPL miRanda miRanda
7779 chr6 44118015 44118015 1 + G T LUAD 44118012 + 44117992 44118032 41 TGCTACACTTTCCTCATCTTCATGGTGCTGCTCCTACCCTC TGCTACACTTTCCTCATCTTCATTGTGCTGCTCCTACCCTC < 41bp 0.701592281105609 0.29255392708144 0.23201707 0.13872623 prediction 0.403184562211218 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44118012 chr6:44118015 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97535 0 0 1 9 44118002 44118024 mRNA hsa-miR-15a TMEM63B miRanda miRanda
7780 chr6 44118015 44118015 1 + G T LUAD 44118012 + 44117992 44118032 41 TGCTACACTTTCCTCATCTTCATGGTGCTGCTCCTACCCTC TGCTACACTTTCCTCATCTTCATTGTGCTGCTCCTACCCTC < 41bp 0.701592281105609 0.29255392708144 0.23201707 0.13872623 prediction 0.403184562211218 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44118012 chr6:44118015 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97535 0 0 1 9 44118002 44118024 mRNA hsa-miR-16 TMEM63B miRanda miRanda
7781 chr6 44118015 44118015 1 + G T LUAD 44118012 + 44117992 44118032 41 TGCTACACTTTCCTCATCTTCATGGTGCTGCTCCTACCCTC TGCTACACTTTCCTCATCTTCATTGTGCTGCTCCTACCCTC < 41bp 0.701592281105609 0.29255392708144 0.23201707 0.13872623 prediction 0.403184562211218 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44118012 chr6:44118015 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97535 0 0 1 9 44118001 44118021 mRNA hsa-miR-29a TMEM63B miRanda miRanda
7782 chr6 44118015 44118015 1 + G T LUAD 44118012 + 44117992 44118032 41 TGCTACACTTTCCTCATCTTCATGGTGCTGCTCCTACCCTC TGCTACACTTTCCTCATCTTCATTGTGCTGCTCCTACCCTC < 41bp 0.701592281105609 0.29255392708144 0.23201707 0.13872623 prediction 0.403184562211218 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44118012 chr6:44118015 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97535 0 0 1 9 44118000 44118021 mRNA hsa-miR-29b TMEM63B miRanda miRanda
7783 chr6 44118015 44118015 1 + G T LUAD 44118012 + 44117992 44118032 41 TGCTACACTTTCCTCATCTTCATGGTGCTGCTCCTACCCTC TGCTACACTTTCCTCATCTTCATTGTGCTGCTCCTACCCTC < 41bp 0.701592281105609 0.29255392708144 0.23201707 0.13872623 prediction 0.403184562211218 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44118012 chr6:44118015 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97535 0 0 1 9 44118002 44118024 mRNA hsa-miR-15b TMEM63B miRanda miRanda
7784 chr6 44118015 44118015 1 + G T LUAD 44118012 + 44117992 44118032 41 TGCTACACTTTCCTCATCTTCATGGTGCTGCTCCTACCCTC TGCTACACTTTCCTCATCTTCATTGTGCTGCTCCTACCCTC < 41bp 0.701592281105609 0.29255392708144 0.23201707 0.13872623 prediction 0.403184562211218 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44118012 chr6:44118015 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97535 0 0 1 9 44118003 44118024 mRNA hsa-miR-195 TMEM63B miRanda miRanda
7785 chr6 44118015 44118015 1 + G T LUAD 44118012 + 44117992 44118032 41 TGCTACACTTTCCTCATCTTCATGGTGCTGCTCCTACCCTC TGCTACACTTTCCTCATCTTCATTGTGCTGCTCCTACCCTC < 41bp 0.701592281105609 0.29255392708144 0.23201707 0.13872623 prediction 0.403184562211218 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44118012 chr6:44118015 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97535 0 0 1 9 44118001 44118021 mRNA hsa-miR-29c TMEM63B miRanda miRanda
7786 chr6 44118015 44118015 1 + G T LUAD 44118012 + 44117992 44118032 41 TGCTACACTTTCCTCATCTTCATGGTGCTGCTCCTACCCTC TGCTACACTTTCCTCATCTTCATTGTGCTGCTCCTACCCTC < 41bp 0.701592281105609 0.29255392708144 0.23201707 0.13872623 prediction 0.403184562211218 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44118012 chr6:44118015 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97535 0 0 1 9 44118005 44118024 mRNA hsa-miR-424 TMEM63B miRanda miRanda
7787 chr6 44118015 44118015 1 + G T LUAD 44118012 + 44117992 44118032 41 TGCTACACTTTCCTCATCTTCATGGTGCTGCTCCTACCCTC TGCTACACTTTCCTCATCTTCATTGTGCTGCTCCTACCCTC < 41bp 0.701592281105609 0.29255392708144 0.23201707 0.13872623 prediction 0.403184562211218 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44118012 chr6:44118015 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_97535 0 0 1 9 44118004 44118024 mRNA hsa-miR-497 TMEM63B miRanda miRanda
7788 chr8 94717212 94717212 1 + C T UCEC 94717209 + 94717189 94717229 41 CTCAGTTAGAAAGAACACGTCAGCGAAACCCATCTGATCGA CTCAGTTAGAAAGAACACGTCAGTGAAACCCATCTGATCGA < 41bp 0.70157446834776 0.485836307550068 0.21944559 0.22333446 prediction 0.403148936695521 Functional Loss - FAM92A ENSG00000188343 CDS Human protein_coding chr8:94717209 chr8:94717212 stopgain 0.988 1 24 hm5C_associated_SNPs_97559 0 0 0 2 94717207 94717228 mRNA hsa-miR-361-5p FAM92A1 miRanda miRanda
7789 chr8 94717212 94717212 1 + C T UCEC 94717209 + 94717189 94717229 41 CTCAGTTAGAAAGAACACGTCAGCGAAACCCATCTGATCGA CTCAGTTAGAAAGAACACGTCAGTGAAACCCATCTGATCGA < 41bp 0.70157446834776 0.485836307550068 0.21944559 0.22333446 prediction 0.403148936695521 Functional Loss - FAM92A ENSG00000188343 CDS Human protein_coding chr8:94717209 chr8:94717212 stopgain 0.988 1 24 hm5C_associated_SNPs_97559 0 0 0 2 94717207 94717228 mRNA hsa-miR-383 FAM92A1 miRanda miRanda
7790 chr5 104435461 104435461 1 + G T ESCA 104435459 + 104435439 104435479 41 GTTGACAATTCCAAAGCTTCCAGAACTTAAGTAACTGGAAG GTTGACAATTCCAAAGCTTCCATAACTTAAGTAACTGGAAG < 41bp 0.701505691854021 0.412608343241805 0.19797397 0.14438438 prediction 0.403011383708042 Functional Loss - RAB9BP1 ENSG00000232159 ncRNA_exonic Human processed_pseudogene chr5:104435459 chr5:104435461 . . 0 23 hm5C_associated_SNPs_97637 0 0 0 1 104435456 104435478 mRNA hsa-miR-145 RAB9BP1 miRanda miRanda
7791 chr6 160858113 160858113 1 + G A BRCA 160858110 + 160858090 160858130 41 CTCTATATAGACTTTTTCATCTCGGGCGTGGTGGAACTGCC CTCTATATAGACTTTTTCATCTCAGGCGTGGTGGAACTGCC < 41bp 0.818218818870071 0.616817924818937 0.24721447 0.12257713 prediction 0.402801788102268 Functional Loss - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160858110 chr6:160858113 synonymous SNV . 0 24 hm5C_associated_SNPs_97753 0 0 0 1 160858093 160858113 mRNA hsa-miR-143 SLC22A3 miRanda miRanda
7792 chr19 50363264 50363264 1 + T C LIHC 50363263 + 50363243 50363283 41 GCCGGCTGCGTGCACTTTTCCTACAAAGCATCGTGTGAGAT GCCGGCTGCGTGCACTTTTCCCACAAAGCATCGTGTGAGAT < 41bp 0.701385762783618 0.43041560313864 0.30572355 0.023399174 prediction 0.402771525567237 Functional Loss - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50363263 chr19:50363264 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_97769 0 0 1 2 50363264 50363287 mRNA hsa-miR-127-3p PTOV1 miRanda miRanda
7793 chr19 50363264 50363264 1 + T C LIHC 50363263 + 50363243 50363283 41 GCCGGCTGCGTGCACTTTTCCTACAAAGCATCGTGTGAGAT GCCGGCTGCGTGCACTTTTCCCACAAAGCATCGTGTGAGAT < 41bp 0.701385762783618 0.43041560313864 0.30572355 0.023399174 prediction 0.402771525567237 Functional Loss - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50363263 chr19:50363264 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_97769 0 0 1 2 50363261 50363282 mRNA hsa-miR-342-3p PTOV1 miRanda miRanda
7794 chr16 90103743 90103743 1 + G A COAD 90103740 + 90103720 90103760 41 GGCAGACCCTCTCCAGAAGGCTCGGGAGGAGATGAGCGAGA GGCAGACCCTCTCCAGAAGGCTCAGGAGGAGATGAGCGAGA < 41bp 0.807045091631541 0.605698425365698 0.4150129 0.37662855 prediction 0.402693332531685 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90103740 chr16:90103743 nonsynonymous SNV 0.198 0 24 hm5C_associated_SNPs_97809 0 0 1 1 90103724 90103745 mRNA hsa-miR-615-3p GAS8 miRanda miRanda
7795 chr17 74465916 74465916 1 + C T rs72466448 74465914 + 74465894 74465934 41 GCCGCGCTCATGTGCGAGGACGCGCTGGTACCCTTCTATGA GCCGCGCTCATGTGCGAGGACGTGCTGGTACCCTTCTATGA < 41bp 0.818246452000884 0.616930186487901 0.27933264 0.107264906 prediction 0.402632531025967 Functional Loss - AANAT ENSG00000129673 CDS Human protein_coding chr17:74465914 chr17:74465916 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_97836 0 0 0 2 74465915 74465935 mRNA hsa-miR-376a AANAT miRanda miRanda
7796 chr17 74465916 74465916 1 + C T rs72466448 74465914 + 74465894 74465934 41 GCCGCGCTCATGTGCGAGGACGCGCTGGTACCCTTCTATGA GCCGCGCTCATGTGCGAGGACGTGCTGGTACCCTTCTATGA < 41bp 0.818246452000884 0.616930186487901 0.27933264 0.107264906 prediction 0.402632531025967 Functional Loss - AANAT ENSG00000129673 CDS Human protein_coding chr17:74465914 chr17:74465916 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_97836 0 0 0 2 74465914 74465935 mRNA hsa-miR-376b AANAT miRanda miRanda
7797 chr1 233802387 233802387 1 + C T SARC 233802384 + 233802364 233802404 41 TCAGATGGAGGTAAGGCCTTCTGCATCATCTACTCCGTCAT TCAGATGGAGGTAAGGCCTTCTGTATCATCTACTCCGTCAT < 41bp 0.760371025128985 0.559069391066522 0.16000414 0.19049674 prediction 0.402603268124925 Functional Loss - KCNK1 ENSG00000135750 CDS Human protein_coding chr1:233802384 chr1:233802387 synonymous SNV . 0 24 hm5C_associated_SNPs_97849 0 0 1 1 233802369 233802391 mRNA hsa-miR-383 KCNK1 miRanda miRanda
7798 chr1 210027087 210027087 1 + C T rs114339116 210027085 + 210027065 210027105 41 GTTTCCATTATTACTATTCACACGACTCCCAAATCTCCAGC GTTTCCATTATTACTATTCACATGACTCCCAAATCTCCAGC < 41bp 0.701280329360392 0.477711129229854 0.007141918 0.031295717 prediction 0.402560658720784 Functional Loss - DIEXF ENSG00000117597 UTR3 Human protein_coding chr1:210027085 chr1:210027087 . . 0 23 hm5C_associated_SNPs_97868 0 0 1 1 210027072 210027094 mRNA hsa-miR-122 C1orf107 miRanda miRanda
7799 chr1 76254912 76254912 1 + G A BLCA 76254909 + 76254889 76254929 41 GGTCTGACAGTAATGGATCTCATGGGACAACTTCATCGCAT GGTCTGACAGTAATGGATCTCATAGGACAACTTCATCGCAT < 41bp 0.769210954838144 0.567941574182608 0.20437264 0.052229285 prediction 0.402538761311073 Functional Loss - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76254909 chr1:76254912 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_97877 0 0 1 1 76254902 76254922 mRNA hsa-miR-382 RABGGTB miRanda miRanda
7800 chr9 34658544 34658544 1 + G T LUSC 34658540 + 34658520 34658560 41 GCCCTGACCCACCCCAGGGCCTGCGGGTAGAGTCAGTACCA GCCCTGACCCACCCCAGGGCCTGCTGGTAGAGTCAGTACCA < 41bp 0.721668649557342 0.520423846572656 0.13116887 0.10006234 prediction 0.402489605969371 Functional Loss - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34658540 chr9:34658544 nonsynonymous SNV 0.830 0 25 hm5C_associated_SNPs_97905 0 0 0 2 34658540 34658563 mRNA hsa-miR-486-5p IL11RA miRanda miRanda
7801 chr9 34658544 34658544 1 + G T LUSC 34658540 + 34658520 34658560 41 GCCCTGACCCACCCCAGGGCCTGCGGGTAGAGTCAGTACCA GCCCTGACCCACCCCAGGGCCTGCTGGTAGAGTCAGTACCA < 41bp 0.721668649557342 0.520423846572656 0.13116887 0.10006234 prediction 0.402489605969371 Functional Loss - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34658540 chr9:34658544 nonsynonymous SNV 0.830 0 25 hm5C_associated_SNPs_97905 0 0 0 2 34658542 34658565 mRNA hsa-miR-490-3p IL11RA miRanda miRanda
7802 chr2 220368861 220368861 1 + C T STAD 220368858 + 220368838 220368878 41 ATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTCTCC ATCAGTGACATCATCAACTGCGGTATCTACCTCTTTTCTCC < 41bp 0.762497929463465 0.561283179568717 0.2770229 0.1994375 prediction 0.402429499789495 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368858 chr2:220368861 synonymous SNV . 0 24 hm5C_associated_SNPs_97930 0 0 1 9 220368851 220368871 mRNA hsa-let-7a GMPPA miRanda miRanda
7803 chr2 220368861 220368861 1 + C T STAD 220368858 + 220368838 220368878 41 ATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTCTCC ATCAGTGACATCATCAACTGCGGTATCTACCTCTTTTCTCC < 41bp 0.762497929463465 0.561283179568717 0.2770229 0.1994375 prediction 0.402429499789495 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368858 chr2:220368861 synonymous SNV . 0 24 hm5C_associated_SNPs_97930 0 0 1 9 220368850 220368871 mRNA hsa-let-7b GMPPA miRanda miRanda
7804 chr2 220368861 220368861 1 + C T STAD 220368858 + 220368838 220368878 41 ATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTCTCC ATCAGTGACATCATCAACTGCGGTATCTACCTCTTTTCTCC < 41bp 0.762497929463465 0.561283179568717 0.2770229 0.1994375 prediction 0.402429499789495 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368858 chr2:220368861 synonymous SNV . 0 24 hm5C_associated_SNPs_97930 0 0 1 9 220368851 220368871 mRNA hsa-let-7c GMPPA miRanda miRanda
7805 chr2 220368861 220368861 1 + C T STAD 220368858 + 220368838 220368878 41 ATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTCTCC ATCAGTGACATCATCAACTGCGGTATCTACCTCTTTTCTCC < 41bp 0.762497929463465 0.561283179568717 0.2770229 0.1994375 prediction 0.402429499789495 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368858 chr2:220368861 synonymous SNV . 0 24 hm5C_associated_SNPs_97930 0 0 1 9 220368851 220368871 mRNA hsa-let-7d GMPPA miRanda miRanda
7806 chr2 220368861 220368861 1 + C T STAD 220368858 + 220368838 220368878 41 ATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTCTCC ATCAGTGACATCATCAACTGCGGTATCTACCTCTTTTCTCC < 41bp 0.762497929463465 0.561283179568717 0.2770229 0.1994375 prediction 0.402429499789495 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368858 chr2:220368861 synonymous SNV . 0 24 hm5C_associated_SNPs_97930 0 0 1 9 220368851 220368871 mRNA hsa-let-7e GMPPA miRanda miRanda
7807 chr2 220368861 220368861 1 + C T STAD 220368858 + 220368838 220368878 41 ATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTCTCC ATCAGTGACATCATCAACTGCGGTATCTACCTCTTTTCTCC < 41bp 0.762497929463465 0.561283179568717 0.2770229 0.1994375 prediction 0.402429499789495 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368858 chr2:220368861 synonymous SNV . 0 24 hm5C_associated_SNPs_97930 0 0 1 9 220368851 220368871 mRNA hsa-let-7f GMPPA miRanda miRanda
7808 chr2 220368861 220368861 1 + C T STAD 220368858 + 220368838 220368878 41 ATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTCTCC ATCAGTGACATCATCAACTGCGGTATCTACCTCTTTTCTCC < 41bp 0.762497929463465 0.561283179568717 0.2770229 0.1994375 prediction 0.402429499789495 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368858 chr2:220368861 synonymous SNV . 0 24 hm5C_associated_SNPs_97930 0 0 1 9 220368850 220368871 mRNA hsa-miR-98 GMPPA miRanda miRanda
7809 chr2 220368861 220368861 1 + C T STAD 220368858 + 220368838 220368878 41 ATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTCTCC ATCAGTGACATCATCAACTGCGGTATCTACCTCTTTTCTCC < 41bp 0.762497929463465 0.561283179568717 0.2770229 0.1994375 prediction 0.402429499789495 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368858 chr2:220368861 synonymous SNV . 0 24 hm5C_associated_SNPs_97930 0 0 1 9 220368851 220368871 mRNA hsa-let-7g GMPPA miRanda miRanda
7810 chr2 220368861 220368861 1 + C T STAD 220368858 + 220368838 220368878 41 ATCAGTGACATCATCAACTGCGGCATCTACCTCTTTTCTCC ATCAGTGACATCATCAACTGCGGTATCTACCTCTTTTCTCC < 41bp 0.762497929463465 0.561283179568717 0.2770229 0.1994375 prediction 0.402429499789495 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368858 chr2:220368861 synonymous SNV . 0 24 hm5C_associated_SNPs_97930 0 0 1 9 220368844 220368871 mRNA hsa-let-7i GMPPA miRanda miRanda
7811 chrX 109764219 109764219 1 + T C UCEC 109764218 + 109764198 109764238 41 CCTGCTTCTGCTACGACCTTCTGGGGAACGCGAATTTCTCA CCTGCTTCTGCTACGACCTTCCGGGGAACGCGAATTTCTCA < 41bp 0.763575293122235 0.562395552848071 0.5580105 0.92482984 prediction 0.402359480548329 Functional Loss - TDGF1P3 ENSG00000225366 ncRNA_exonic Human transcribed_processed_pseudogene chrX:109764218 chrX:109764219 . . 0 22 hm5C_associated_SNPs_97956 0 0 0 1 109764217 109764238 mRNA hsa-miR-539 TDGF3 miRanda miRanda
7812 chr3 9944515 9944515 1 + G A rs575577926 9944512 + 9944492 9944532 41 GGGGCCAGGGCAGGCTGGGGCGAGGGCTCCTGCTGGTACTG GGGGCCAGGGCAGGCTGGGGCGAAGGCTCCTGCTGGTACTG < 41bp 0.701164553526101 0.482725271102867 0.8974066 0.7063153 prediction 0.402329107052203 Functional Loss - IL17RE ENSG00000163701 UTR5 Human protein_coding chr3:9944512 chr3:9944515 . . 0 24 hm5C_associated_SNPs_97974 0 0 0 1 9944512 9944527 mRNA hsa-miR-214 IL17RE miRanda miRanda
7813 chr19 44040064 44040064 1 + G T rs138157595 44040060 + 44040040 44040080 41 GACGTGGAGCTGTGGTTTGACAGCGCTGGCTCTGCTTCTCC GACGTGGAGCTGTGGTTTGACAGCTCTGGCTCTGCTTCTCC < 41bp 0.744008532277483 0.542897915573656 0.79778546 0.4557127 prediction 0.402221233407654 Functional Loss - ZNF575 ENSG00000176472 UTR3 Human protein_coding chr19:44040060 chr19:44040064 . . 0 25 hm5C_associated_SNPs_98038 0 0 0 1 44040064 44040085 mRNA hsa-miR-491-5p ZNF575 miRanda miRanda
7814 chr1 148932920 148932920 1 + G A LUSC 148932917 + 148932897 148932937 41 GCGGCCAAGACTCCGTCCTGCAAGGTAAGGTCCCCTCCAGG GCGGCCAAGACTCCGTCCTGCAAAGTAAGGTCCCCTCCAGG < 41bp 0.825799231650424 0.624702492248022 0.9023752 0.799852 prediction 0.402193478804804 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932917 chr1:148932920 . . 0 24 hm5C_associated_SNPs_98053 0 0 0 6 148932919 148932920 mRNA hsa-miR-148a LOC645166 miRanda miRanda
7815 chr1 148932920 148932920 1 + G A LUSC 148932917 + 148932897 148932937 41 GCGGCCAAGACTCCGTCCTGCAAGGTAAGGTCCCCTCCAGG GCGGCCAAGACTCCGTCCTGCAAAGTAAGGTCCCCTCCAGG < 41bp 0.825799231650424 0.624702492248022 0.9023752 0.799852 prediction 0.402193478804804 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932917 chr1:148932920 . . 0 24 hm5C_associated_SNPs_98053 0 0 0 6 148932918 148932920 mRNA hsa-miR-130a LOC645166 miRanda miRanda
7816 chr1 148932920 148932920 1 + G A LUSC 148932917 + 148932897 148932937 41 GCGGCCAAGACTCCGTCCTGCAAGGTAAGGTCCCCTCCAGG GCGGCCAAGACTCCGTCCTGCAAAGTAAGGTCCCCTCCAGG < 41bp 0.825799231650424 0.624702492248022 0.9023752 0.799852 prediction 0.402193478804804 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932917 chr1:148932920 . . 0 24 hm5C_associated_SNPs_98053 0 0 0 6 148932919 148932920 mRNA hsa-miR-152 LOC645166 miRanda miRanda
7817 chr1 148932920 148932920 1 + G A LUSC 148932917 + 148932897 148932937 41 GCGGCCAAGACTCCGTCCTGCAAGGTAAGGTCCCCTCCAGG GCGGCCAAGACTCCGTCCTGCAAAGTAAGGTCCCCTCCAGG < 41bp 0.825799231650424 0.624702492248022 0.9023752 0.799852 prediction 0.402193478804804 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932917 chr1:148932920 . . 0 24 hm5C_associated_SNPs_98053 0 0 0 6 148932919 148932920 mRNA hsa-miR-130b LOC645166 miRanda miRanda
7818 chr1 148932920 148932920 1 + G A LUSC 148932917 + 148932897 148932937 41 GCGGCCAAGACTCCGTCCTGCAAGGTAAGGTCCCCTCCAGG GCGGCCAAGACTCCGTCCTGCAAAGTAAGGTCCCCTCCAGG < 41bp 0.825799231650424 0.624702492248022 0.9023752 0.799852 prediction 0.402193478804804 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932917 chr1:148932920 . . 0 24 hm5C_associated_SNPs_98053 0 0 0 6 148932916 148932920 mRNA hsa-miR-148b LOC645166 miRanda miRanda
7819 chr1 148932920 148932920 1 + G A LUSC 148932917 + 148932897 148932937 41 GCGGCCAAGACTCCGTCCTGCAAGGTAAGGTCCCCTCCAGG GCGGCCAAGACTCCGTCCTGCAAAGTAAGGTCCCCTCCAGG < 41bp 0.825799231650424 0.624702492248022 0.9023752 0.799852 prediction 0.402193478804804 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932917 chr1:148932920 . . 0 24 hm5C_associated_SNPs_98053 0 0 0 6 148932903 148932920 mRNA hsa-miR-431 LOC645166 miRanda miRanda
7820 chr14 58698956 58698956 1 + C T COAD 58698953 + 58698933 58698973 41 ATTTCGAATTCATACTCCACCTGCAAAAGCTAATTGTGTGG ATTTCGAATTCATACTCCACCTGTAAAAGCTAATTGTGTGG < 41bp 0.701094293487138 0.470013389836149 0.028706253 0.055133075 prediction 0.402188586974277 Functional Loss - ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58698953 chr14:58698956 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_98056 0 0 0 1 58698935 58698956 mRNA hsa-miR-125a-3p ACTR10 miRanda miRanda
7821 chr6 151940847 151940847 1 + C T rs9479085 151940845 + 151940825 151940865 41 TATGCCTGTAATCCCAGCTACTCGAGAGGCTGAGACACGAA TATGCCTGTAATCCCAGCTACTTGAGAGGCTGAGACACGAA < 41bp 0.820584932254315 0.61951597654266 0.8972372 0.38896304 prediction 0.402137911423311 Functional Loss - CCDC170 ENSG00000120262 UTR3 Human protein_coding chr6:151940845 chr6:151940847 . . 0 23 hm5C_associated_SNPs_98078 0 0 0 1 151940841 151940864 mRNA hsa-miR-187 C6orf97 miRanda miRanda
7822 chr19 43327077 43327077 1 + G A rs141043736 43327074 + 43327054 43327094 41 TGCCACAGAGAAGAAGCTGGCTCGGATGCTGCTGGCCCCTA TGCCACAGAGAAGAAGCTGGCTCAGATGCTGCTGGCCCCTA < 41bp 0.773109986309965 0.572046098701487 0.21497723 0.10248655 prediction 0.402127775216955 Functional Loss - PSG8-AS1 ENSG00000225877 ncRNA_exonic Human lincRNA chr19:43327074 chr19:43327077 . . 0 24 hm5C_associated_SNPs_98082 0 0 0 1 43327057 43327079 mRNA hsa-miR-615-3p FLJ30307 miRanda miRanda
7823 chr19 35557170 35557170 1 + C T GBM 35557167 + 35557147 35557187 41 CCCCAGACTCACTCCGAAGCCAGCGGCATGGTGACCCAGCT CCCCAGACTCACTCCGAAGCCAGTGGCATGGTGACCCAGCT < 41bp 0.720904754964261 0.519852825261446 0.9069387 0.73750705 prediction 0.40210385940563 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35557167 chr19:35557170 synonymous SNV . 0 24 hm5C_associated_SNPs_98095 0 0 1 1 35557151 35557175 mRNA hsa-miR-874 HPN miRanda miRanda
7824 chr8 23153662 23153662 1 + C T rs182966995 23153660 + 23153640 23153680 41 CGTCCCGACGTAGCTGGCGCCCCCAACACCATAAGCCTTCA CGTCCCGACGTAGCTGGCGCCCTCAACACCATAAGCCTTCA < 41bp 0.701046851784908 0.446976278625267 0.4442108 0.14160544 prediction 0.402093703569816 Functional Loss - R3HCC1 ENSG00000104679 UTR3 Human protein_coding chr8:23153660 chr8:23153662 . . 0 23 hm5C_associated_SNPs_98104 0 0 1 1 23153657 23153678 mRNA hsa-miR-154 R3HCC1 miRanda miRanda
7825 chr10 99508086 99508086 1 + C T rs116366646 99508084 + 99508064 99508104 41 GCACATGTGAAGCCGCCTACCGCGTGCTGCACTGGGAGAAC GCACATGTGAAGCCGCCTACCGTGTGCTGCACTGGGAGAAC < 41bp 0.83917883007118 0.6381685982417 0.403086 0.5151723 prediction 0.402020463658961 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99508084 chr10:99508086 synonymous SNV . 0 23 hm5C_associated_SNPs_98149 1 0 1 3 99508077 99508098 mRNA hsa-miR-148a ZFYVE27 miRanda miRanda
7826 chr10 99508086 99508086 1 + C T rs116366646 99508084 + 99508064 99508104 41 GCACATGTGAAGCCGCCTACCGCGTGCTGCACTGGGAGAAC GCACATGTGAAGCCGCCTACCGTGTGCTGCACTGGGAGAAC < 41bp 0.83917883007118 0.6381685982417 0.403086 0.5151723 prediction 0.402020463658961 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99508084 chr10:99508086 synonymous SNV . 0 23 hm5C_associated_SNPs_98149 1 0 1 3 99508078 99508098 mRNA hsa-miR-152 ZFYVE27 miRanda miRanda
7827 chr10 99508086 99508086 1 + C T rs116366646 99508084 + 99508064 99508104 41 GCACATGTGAAGCCGCCTACCGCGTGCTGCACTGGGAGAAC GCACATGTGAAGCCGCCTACCGTGTGCTGCACTGGGAGAAC < 41bp 0.83917883007118 0.6381685982417 0.403086 0.5151723 prediction 0.402020463658961 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99508084 chr10:99508086 synonymous SNV . 0 23 hm5C_associated_SNPs_98149 1 0 1 3 99508077 99508098 mRNA hsa-miR-148b ZFYVE27 miRanda miRanda
7828 chr12 12232586 12232586 1 + G T GBM 12232582 + 12232562 12232602 41 CGCCTGCCAAGGTCTCTGCTCAGGGTCAAAGGACGTTGGAA CGCCTGCCAAGGTCTCTGCTCAGGTTCAAAGGACGTTGGAA < 41bp 0.747307573595947 0.546306239056565 0.91428155 0.8957577 prediction 0.402002669078765 Functional Loss - BCL2L14 ENSG00000121380 CDS Human protein_coding chr12:12232582 chr12:12232586 nonsynonymous SNV 0.006 3 25 hm5C_associated_SNPs_98157 0 0 0 3 12232566 12232587 mRNA hsa-miR-125b BCL2L14 miRanda miRanda
7829 chr12 12232586 12232586 1 + G T GBM 12232582 + 12232562 12232602 41 CGCCTGCCAAGGTCTCTGCTCAGGGTCAAAGGACGTTGGAA CGCCTGCCAAGGTCTCTGCTCAGGTTCAAAGGACGTTGGAA < 41bp 0.747307573595947 0.546306239056565 0.91428155 0.8957577 prediction 0.402002669078765 Functional Loss - BCL2L14 ENSG00000121380 CDS Human protein_coding chr12:12232582 chr12:12232586 nonsynonymous SNV 0.006 3 25 hm5C_associated_SNPs_98157 0 0 0 3 12232564 12232587 mRNA hsa-miR-125a-5p BCL2L14 miRanda miRanda
7830 chr12 12232586 12232586 1 + G T GBM 12232582 + 12232562 12232602 41 CGCCTGCCAAGGTCTCTGCTCAGGGTCAAAGGACGTTGGAA CGCCTGCCAAGGTCTCTGCTCAGGTTCAAAGGACGTTGGAA < 41bp 0.747307573595947 0.546306239056565 0.91428155 0.8957577 prediction 0.402002669078765 Functional Loss - BCL2L14 ENSG00000121380 CDS Human protein_coding chr12:12232582 chr12:12232586 nonsynonymous SNV 0.006 3 25 hm5C_associated_SNPs_98157 0 0 0 3 12232568 12232589 mRNA hsa-miR-504 BCL2L14 miRanda miRanda
7831 chr10 71835473 71835473 1 + G A SKCM 71835470 + 71835450 71835490 41 GCTGTCCCGTTCAGCTAGGGCAGGTGTCATCTTTCCAGTGG GCTGTCCCGTTCAGCTAGGGCAGATGTCATCTTTCCAGTGG < 41bp 0.826620553854776 0.625653382060022 0.6166278 0.3173108 prediction 0.401934343589509 Functional Loss - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71835470 chr10:71835473 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_98192 0 0 1 1 71835458 71835480 mRNA hsa-miR-425 H2AFY2 miRanda miRanda
7832 chr3 97503872 97503872 1 + G A UCEC 97503869 + 97503849 97503889 41 TGGTTGTGGCCAAAGAAGAACTCGATACTCTTCTGAATCAT TGGTTGTGGCCAAAGAAGAACTCAATACTCTTCTGAATCAT < 41bp 0.794028681788614 0.593078831030389 0.886096 0.44411686 prediction 0.401899701516448 Functional Loss - ARL6 ENSG00000113966 CDS Human protein_coding chr3:97503869 chr3:97503872 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_98207 0 0 0 1 97503866 97503888 mRNA hsa-miR-383 ARL6 miRanda miRanda
7833 chr5 68417643 68417643 1 + C T rs164578 68417641 + 68417621 68417661 41 CATCTGATCACAGCCATTCACACCATATGCATGGACACAGT CATCTGATCACAGCCATTCACATCATATGCATGGACACAGT < 41bp 0.888976916225908 0.688037896106955 0.037582695 0.06581172 prediction 0.401878040237905 Functional Loss - SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68417641 chr5:68417643 synonymous SNV . 0 23 hm5C_associated_SNPs_98216 0 0 0 1 68417629 68417652 mRNA hsa-miR-448 SLC30A5 miRanda miRanda
7834 chr17 28512754 28512754 1 + C T rs564701011 28512751 + 28512731 28512771 41 ACTGTAATTCCTGGAACCTGCTGCGTAAAACCATAAAGGAG ACTGTAATTCCTGGAACCTGCTGTGTAAAACCATAAAGGAG < 41bp 0.701712702205173 0.500781766195861 0.25173897 0.20540184 prediction 0.401861872018625 Functional Loss - NSRP1 ENSG00000126653 UTR3 Human protein_coding chr17:28512751 chr17:28512754 . . 0 24 hm5C_associated_SNPs_98218 0 0 1 1 28512736 28512754 mRNA hsa-miR-214 CCDC55 miRanda miRanda
7835 chr1 205500814 205500814 1 + T C rs575875384 205500813 + 205500793 205500833 41 CCACCCTGGTGTTTGGGCACCTGCGTGGGATGCACACGGAT CCACCCTGGTGTTTGGGCACCCGCGTGGGATGCACACGGAT < 41bp 0.70091395130611 0.486396045156455 0.84247565 0.6295443 prediction 0.401827902612221 Functional Loss - CDK18 ENSG00000117266 UTR3 Human protein_coding chr1:205500813 chr1:205500814 . . 0 22 hm5C_associated_SNPs_98232 0 0 1 1 205500801 205500826 mRNA hsa-miR-324-5p CDK18 miRanda miRanda
7836 chr8 8102183 8102183 1 + G A rs112792199 8102180 + 8102160 8102200 41 CGCCAGCAAGATAGCAAAAGCAGGAAGAGAGCCAGCCGGAA CGCCAGCAAGATAGCAAAAGCAGAAAGAGAGCCAGCCGGAA < 41bp 0.736128979607393 0.535224868956553 0.4409418 0.19682083 prediction 0.401808221301679 Functional Loss - FAM86B3P ENSG00000173295;ENSG00000253981 ncRNA_exonic Human other chr8:8102180 chr8:8102183 . . 0 24 hm5C_associated_SNPs_98241 0 0 0 1 8102173 8102195 mRNA hsa-miR-149 FLJ10661 miRanda miRanda
7837 chr6 26413533 26413533 1 + C T UCEC 26413531 + 26413511 26413551 41 TTAATTGGCATTATTGTGTTCTCGGCTGTGAGAGCTTCATA TTAATTGGCATTATTGTGTTCTTGGCTGTGAGAGCTTCATA < 41bp 0.700900952071703 0.432240708907861 0.26327702 0.17318872 prediction 0.401801904143407 Functional Loss - BTN3A1 ENSG00000026950 CDS Human protein_coding chr6:26413531 chr6:26413533 synonymous SNV . 0 23 hm5C_associated_SNPs_98246 0 0 1 1 26413520 26413543 mRNA hsa-miR-342-3p BTN3A1 miRanda miRanda
7838 chr13 24466086 24466086 1 + C T rs540250956 24466083 + 24466063 24466103 41 GCCCCTGAGGCCCAGTCTCTCCTCGGAGGCCTTTCTCTCCC GCCCCTGAGGCCCAGTCTCTCCTTGGAGGCCTTTCTCTCCC < 41bp 0.700897776682712 0.499020031179191 0.11785793 0.059555322 prediction 0.401795553365425 Functional Loss - C1QTNF9B ENSG00000205863 CDS Human protein_coding chr13:24466083 chr13:24466086 nonsynonymous SNV 0.014 1 24 hm5C_associated_SNPs_98250 0 0 1 1 24466084 24466103 mRNA hsa-miR-185 PCOTH miRanda miRanda
7839 chr16 30198425 30198425 1 + G T UCEC 30198423 + 30198403 30198443 41 GGCCATGCTGACACTGGGCCCAGAGGTGCACCCAGACACGA GGCCATGCTGACACTGGGCCCATAGGTGCACCCAGACACGA < 41bp 0.700897420586851 0.348394215345878 0.68551695 0.114263296 prediction 0.401794841173702 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30198423 chr16:30198425 stopgain 0.979 1 23 hm5C_associated_SNPs_98251 0 0 0 1 30198424 30198443 mRNA hsa-miR-187 CORO1A miRanda miRanda
7840 chr22 19423520 19423520 1 + G A rs191851927 19423517 + 19423497 19423537 41 GCTATCCTTAACATGCTGCCCCTGAGAGTAGGAATGACCAG GCTATCCTTAACATGCTGCCCCTAAGAGTAGGAATGACCAG < 41bp 0.700878570999663 0.475689350307822 0.0893628 0.04892531 prediction 0.401757141999326 Functional Loss - MRPL40 ENSG00000185608 UTR3 Human protein_coding chr22:19423517 chr22:19423520 . . 0 24 hm5C_associated_SNPs_98277 0 0 1 1 19423518 19423541 mRNA hsa-miR-10a MRPL40 miRanda miRanda
7841 chr1 63877651 63877651 1 + C T UCEC 63877648 + 63877628 63877668 41 GTTGTGGCTTCCTTCGTTCTCTGCTGGCTGCCATTCTTTAC GTTGTGGCTTCCTTCGTTCTCTGTTGGCTGCCATTCTTTAC < 41bp 0.777193049589063 0.576338415429134 0.024250984 0.034347087 prediction 0.401709268319858 Functional Loss - ALG6 ENSG00000088035 CDS Human protein_coding chr1:63877648 chr1:63877651 synonymous SNV . 0 24 hm5C_associated_SNPs_98301 0 0 1 4 63877635 63877657 mRNA hsa-miR-15a ALG6 miRanda miRanda
7842 chr1 63877651 63877651 1 + C T UCEC 63877648 + 63877628 63877668 41 GTTGTGGCTTCCTTCGTTCTCTGCTGGCTGCCATTCTTTAC GTTGTGGCTTCCTTCGTTCTCTGTTGGCTGCCATTCTTTAC < 41bp 0.777193049589063 0.576338415429134 0.024250984 0.034347087 prediction 0.401709268319858 Functional Loss - ALG6 ENSG00000088035 CDS Human protein_coding chr1:63877648 chr1:63877651 synonymous SNV . 0 24 hm5C_associated_SNPs_98301 0 0 1 4 63877640 63877662 mRNA hsa-miR-183 ALG6 miRanda miRanda
7843 chr1 63877651 63877651 1 + C T UCEC 63877648 + 63877628 63877668 41 GTTGTGGCTTCCTTCGTTCTCTGCTGGCTGCCATTCTTTAC GTTGTGGCTTCCTTCGTTCTCTGTTGGCTGCCATTCTTTAC < 41bp 0.777193049589063 0.576338415429134 0.024250984 0.034347087 prediction 0.401709268319858 Functional Loss - ALG6 ENSG00000088035 CDS Human protein_coding chr1:63877648 chr1:63877651 synonymous SNV . 0 24 hm5C_associated_SNPs_98301 0 0 1 4 63877646 63877667 mRNA hsa-miR-186 ALG6 miRanda miRanda
7844 chr1 63877651 63877651 1 + C T UCEC 63877648 + 63877628 63877668 41 GTTGTGGCTTCCTTCGTTCTCTGCTGGCTGCCATTCTTTAC GTTGTGGCTTCCTTCGTTCTCTGTTGGCTGCCATTCTTTAC < 41bp 0.777193049589063 0.576338415429134 0.024250984 0.034347087 prediction 0.401709268319858 Functional Loss - ALG6 ENSG00000088035 CDS Human protein_coding chr1:63877648 chr1:63877651 synonymous SNV . 0 24 hm5C_associated_SNPs_98301 0 0 1 4 63877636 63877657 mRNA hsa-miR-195 ALG6 miRanda miRanda
7845 chr20 13782274 13782274 1 + C T COAD 13782271 + 13782251 13782291 41 TCCACACATTTCTCCTTTCACTGCTGTCAATGACCTGGGAC TCCACACATTTCTCCTTTCACTGTTGTCAATGACCTGGGAC < 41bp 0.749581463410269 0.54872762828822 0.30855355 0.24418178 prediction 0.4017076702441 Functional Loss - NDUFAF5 ENSG00000101247 CDS Human protein_coding chr20:13782271 chr20:13782274 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_98302 0 0 1 4 13782255 13782276 mRNA hsa-miR-34a C20orf7 miRanda miRanda
7846 chr20 13782274 13782274 1 + C T COAD 13782271 + 13782251 13782291 41 TCCACACATTTCTCCTTTCACTGCTGTCAATGACCTGGGAC TCCACACATTTCTCCTTTCACTGTTGTCAATGACCTGGGAC < 41bp 0.749581463410269 0.54872762828822 0.30855355 0.24418178 prediction 0.4017076702441 Functional Loss - NDUFAF5 ENSG00000101247 CDS Human protein_coding chr20:13782271 chr20:13782274 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_98302 0 0 1 4 13782254 13782276 mRNA hsa-miR-34c-5p C20orf7 miRanda miRanda
7847 chr20 13782274 13782274 1 + C T COAD 13782271 + 13782251 13782291 41 TCCACACATTTCTCCTTTCACTGCTGTCAATGACCTGGGAC TCCACACATTTCTCCTTTCACTGTTGTCAATGACCTGGGAC < 41bp 0.749581463410269 0.54872762828822 0.30855355 0.24418178 prediction 0.4017076702441 Functional Loss - NDUFAF5 ENSG00000101247 CDS Human protein_coding chr20:13782271 chr20:13782274 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_98302 0 0 1 4 13782255 13782276 mRNA hsa-miR-449a C20orf7 miRanda miRanda
7848 chr20 13782274 13782274 1 + C T COAD 13782271 + 13782251 13782291 41 TCCACACATTTCTCCTTTCACTGCTGTCAATGACCTGGGAC TCCACACATTTCTCCTTTCACTGTTGTCAATGACCTGGGAC < 41bp 0.749581463410269 0.54872762828822 0.30855355 0.24418178 prediction 0.4017076702441 Functional Loss - NDUFAF5 ENSG00000101247 CDS Human protein_coding chr20:13782271 chr20:13782274 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_98302 0 0 1 4 13782255 13782276 mRNA hsa-miR-449b C20orf7 miRanda miRanda
7849 chrX 153664175 153664175 1 + A C BLCA 153664174 + 153664154 153664194 41 CTGCACATGATCCTCAGCCTCAAGACCATGGATCGCTTTGA CTGCACATGATCCTCAGCCTCCAGACCATGGATCGCTTTGA < 41bp 0.700848148259 0.432627857312111 0.33146057 0.4253672 prediction 0.401696296517999 Functional Loss - ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153664174 chrX:153664175 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_98309 0 0 1 1 153664154 153664175 mRNA hsa-miR-485-5p ATP6AP1 miRanda miRanda
7850 chr5 104435563 104435563 1 + G T UCEC 104435561 + 104435541 104435581 41 GTAACAAGACTGACAGTGAACAGCAGGTGTCTGCAGAAGAA GTAACAAGACTGACAGTGAACATCAGGTGTCTGCAGAAGAA < 41bp 0.887074961336828 0.686230904093961 0.19676474 0.08567062 prediction 0.401688114485734 Functional Loss - RAB9BP1 ENSG00000232159 ncRNA_exonic Human processed_pseudogene chr5:104435561 chr5:104435563 . . 0 23 hm5C_associated_SNPs_98311 0 0 0 3 104435547 104435568 mRNA hsa-miR-370 RAB9BP1 miRanda miRanda
7851 chr5 104435563 104435563 1 + G T UCEC 104435561 + 104435541 104435581 41 GTAACAAGACTGACAGTGAACAGCAGGTGTCTGCAGAAGAA GTAACAAGACTGACAGTGAACATCAGGTGTCTGCAGAAGAA < 41bp 0.887074961336828 0.686230904093961 0.19676474 0.08567062 prediction 0.401688114485734 Functional Loss - RAB9BP1 ENSG00000232159 ncRNA_exonic Human processed_pseudogene chr5:104435561 chr5:104435563 . . 0 23 hm5C_associated_SNPs_98311 0 0 0 3 104435550 104435572 mRNA hsa-miR-504 RAB9BP1 miRanda miRanda
7852 chr5 104435563 104435563 1 + G T UCEC 104435561 + 104435541 104435581 41 GTAACAAGACTGACAGTGAACAGCAGGTGTCTGCAGAAGAA GTAACAAGACTGACAGTGAACATCAGGTGTCTGCAGAAGAA < 41bp 0.887074961336828 0.686230904093961 0.19676474 0.08567062 prediction 0.401688114485734 Functional Loss - RAB9BP1 ENSG00000232159 ncRNA_exonic Human processed_pseudogene chr5:104435561 chr5:104435563 . . 0 23 hm5C_associated_SNPs_98311 0 0 0 3 104435558 104435579 mRNA hsa-miR-544 RAB9BP1 miRanda miRanda
7853 chr11 64087313 64087313 1 + T C COAD 64087312 + 64087292 64087332 41 GGGTGTGCTGTTTGGAGTTCCTGGGGCCTTCACCCCTGGAT GGGTGTGCTGTTTGGAGTTCCCGGGGCCTTCACCCCTGGAT < 41bp 0.811476983449757 0.610653606718597 0.90733796 0.9303023 prediction 0.401646753462319 Functional Loss - PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64087312 chr11:64087313 synonymous SNV . 0 22 hm5C_associated_SNPs_98335 0 0 1 1 64087295 64087315 mRNA hsa-miR-873 PRDX5 miRanda miRanda
7854 chr14 37146558 37146558 1 + C T rs17104971 37146556 + 37146536 37146576 41 TTTATTTCTACAGCAGAGGACACGAAAAACAGATAAAACAA TTTATTTCTACAGCAGAGGACATGAAAAACAGATAAAACAA < 41bp 0.774482232662339 0.573687480637635 0.32066527 0.32256573 prediction 0.401589504049409 Functional Loss - PAX9 ENSG00000198807 UTR3 Human protein_coding chr14:37146556 chr14:37146558 . . 0 23 hm5C_associated_SNPs_98363 1 0 0 1 37146539 37146560 mRNA hsa-miR-187 PAX9 miRanda miRanda
7855 chrX 135742106 135742106 1 + C T rs767759171 135742104 + 135742084 135742124 41 CCCCCCCCCCCCGCCACCCTCTCGGACAGTTATTCATTCTC CCCCCCCCCCCCGCCACCCTCTTGGACAGTTATTCATTCTC < 41bp 0.83450412288758 0.633742382186865 0.26871577 0.18043911 prediction 0.40152348140143 Functional Loss - CD40LG ENSG00000102245 UTR3 Human protein_coding chrX:135742104 chrX:135742106 . . 0 23 hm5C_associated_SNPs_98404 0 0 0 2 135742104 135742125 mRNA hsa-miR-143 CD40LG miRanda miRanda
7856 chrX 135742106 135742106 1 + C T rs767759171 135742104 + 135742084 135742124 41 CCCCCCCCCCCCGCCACCCTCTCGGACAGTTATTCATTCTC CCCCCCCCCCCCGCCACCCTCTTGGACAGTTATTCATTCTC < 41bp 0.83450412288758 0.633742382186865 0.26871577 0.18043911 prediction 0.40152348140143 Functional Loss - CD40LG ENSG00000102245 UTR3 Human protein_coding chrX:135742104 chrX:135742106 . . 0 23 hm5C_associated_SNPs_98404 0 0 0 2 135742096 135742118 mRNA hsa-miR-429 CD40LG miRanda miRanda
7857 chr10 96306165 96306165 1 + G T LUAD 96306163 + 96306143 96306183 41 CTCCAGCAATGGTTGAACAACTGGACACTGCTGTGATTACC CTCCAGCAATGGTTGAACAACTTGACACTGCTGTGATTACC < 41bp 0.910027702433065 0.709272041008913 0.5533955 0.13235572 prediction 0.401511322848304 Functional Loss - HELLS ENSG00000119969 CDS Human protein_coding chr10:96306163 chr10:96306165 synonymous SNV . 0 23 hm5C_associated_SNPs_98410 0 0 1 2 96306143 96306167 mRNA hsa-miR-199a-5p HELLS miRanda miRanda
7858 chr10 96306165 96306165 1 + G T LUAD 96306163 + 96306143 96306183 41 CTCCAGCAATGGTTGAACAACTGGACACTGCTGTGATTACC CTCCAGCAATGGTTGAACAACTTGACACTGCTGTGATTACC < 41bp 0.910027702433065 0.709272041008913 0.5533955 0.13235572 prediction 0.401511322848304 Functional Loss - HELLS ENSG00000119969 CDS Human protein_coding chr10:96306163 chr10:96306165 synonymous SNV . 0 23 hm5C_associated_SNPs_98410 0 0 1 2 96306143 96306167 mRNA hsa-miR-199b-5p HELLS miRanda miRanda
7859 chr8 11291604 11291604 1 + G A rs148489358 11291601 + 11291581 11291621 41 TGAAGGGCAACTGGAGGTTCCGGGGAAATGTGAAGAAAGAA TGAAGGGCAACTGGAGGTTCCGGAGAAATGTGAAGAAAGAA < 41bp 0.791118003909265 0.590385164844343 0.9148176 0.90437657 prediction 0.401465678129845 Functional Loss - FAM167A-AS1 ENSG00000184608 UTR5 Human antisense chr8:11291601 chr8:11291604 . . 0 24 hm5C_associated_SNPs_98436 0 0 0 2 11291593 11291614 mRNA hsa-miR-23a C8orf12 miRanda miRanda
7860 chr8 11291604 11291604 1 + G A rs148489358 11291601 + 11291581 11291621 41 TGAAGGGCAACTGGAGGTTCCGGGGAAATGTGAAGAAAGAA TGAAGGGCAACTGGAGGTTCCGGAGAAATGTGAAGAAAGAA < 41bp 0.791118003909265 0.590385164844343 0.9148176 0.90437657 prediction 0.401465678129845 Functional Loss - FAM167A-AS1 ENSG00000184608 UTR5 Human antisense chr8:11291601 chr8:11291604 . . 0 24 hm5C_associated_SNPs_98436 0 0 0 2 11291594 11291614 mRNA hsa-miR-23b C8orf12 miRanda miRanda
7861 chr16 29675507 29675507 1 + C T LUAD 29675505 + 29675485 29675525 41 ACCAGTGGAGCCCCTGTTACCACGGCAGCTAGCTCTCTGGA ACCAGTGGAGCCCCTGTTACCATGGCAGCTAGCTCTCTGGA < 41bp 0.823679640106943 0.622957552057216 0.9092839 0.8774419 prediction 0.401444176099454 Functional Loss - SPN ENSG00000197471 CDS Human protein_coding chr16:29675505 chr16:29675507 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_98445 0 0 1 1 29675495 29675515 mRNA hsa-miR-22 SPN miRanda miRanda
7862 chr19 50185259 50185259 1 + C T COAD 50185256 + 50185236 50185276 41 AAGGACAAGGTGGTGCTGGACGTCGGCTCGGGCACCGGCAT AAGGACAAGGTGGTGCTGGACGTTGGCTCGGGCACCGGCAT < 41bp 0.70070353303858 0.491951136300101 0.4995654 0.50356966 prediction 0.40140706607716 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50185256 chr19:50185259 synonymous SNV . 0 24 hm5C_associated_SNPs_98469 0 0 1 1 50185246 50185267 mRNA hsa-miR-615-3p PRMT1 miRanda miRanda
7863 chr6 71570003 71570003 1 + C T UCEC 71570000 + 71569980 71570020 41 AGCAGGATGGTCTGGAAGCTCATCAGGTCAGACTCTCAGCA AGCAGGATGGTCTGGAAGCTCATTAGGTCAGACTCTCAGCA < 41bp 0.762699743383343 0.562023622446782 0.23765314 0.2565566 prediction 0.401352241873122 Functional Loss - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71570000 chr6:71570003 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_98493 0 0 1 2 71569989 71570010 mRNA hsa-miR-192 SMAP1 miRanda miRanda
7864 chr6 71570003 71570003 1 + C T UCEC 71570000 + 71569980 71570020 41 AGCAGGATGGTCTGGAAGCTCATCAGGTCAGACTCTCAGCA AGCAGGATGGTCTGGAAGCTCATTAGGTCAGACTCTCAGCA < 41bp 0.762699743383343 0.562023622446782 0.23765314 0.2565566 prediction 0.401352241873122 Functional Loss - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71570000 chr6:71570003 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_98493 0 0 1 2 71569989 71570010 mRNA hsa-miR-215 SMAP1 miRanda miRanda
7865 chr18 77137262 77137262 1 + C T SKCM 77137260 + 77137240 77137280 41 CCAACAGATGTTGCCTTTATCACCACCGTGACCTTCCTGTG CCAACAGATGTTGCCTTTATCATCACCGTGACCTTCCTGTG < 41bp 0.700666017481952 0.43937481391627 0.28734976 0.19104597 prediction 0.401332034963904 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77137260 chr18:77137262 nonsynonymous SNV 0.829 1 23 hm5C_associated_SNPs_98505 0 0 0 1 77137254 77137275 mRNA hsa-miR-124 ATP9B miRanda miRanda
7866 chr12 95228567 95228567 1 + G T LUSC 95228565 + 95228545 95228585 41 GATGCTGAAGCCTGGTTCACCAGCTGGACTGAGGAACTGAA GATGCTGAAGCCTGGTTCACCATCTGGACTGAGGAACTGAA < 41bp 0.700635199847085 0.3694313347168 0.85102195 0.4458978 prediction 0.401270399694171 Functional Loss - KRT19P2 ENSG00000216306 ncRNA_exonic Human transcribed_processed_pseudogene chr12:95228565 chr12:95228567 . . 0 23 hm5C_associated_SNPs_98530 0 0 0 1 95228552 95228569 mRNA hsa-miR-138 KRT19P2 miRanda miRanda
7867 chrX 38665013 38665013 1 + T C rs574351078 38665012 + 38664992 38665032 41 CTATGTTGGTGGGAATGGGACTGGGCTGACGCCCTGCATTC CTATGTTGGTGGGAATGGGACCGGGCTGACGCCCTGCATTC < 41bp 0.747719020542127 0.547088139567661 0.89197034 0.8933682 prediction 0.401261761948931 Functional Loss - MID1IP1 ENSG00000165175 UTR3 Human protein_coding chrX:38665012 chrX:38665013 . . 0 22 hm5C_associated_SNPs_98533 0 0 1 1 38665003 38665025 mRNA hsa-miR-24 MID1IP1 miRanda miRanda
7868 chr5 60241199 60241199 1 + G T UCEC 60241196 + 60241176 60241216 41 TACTACTACATCCCGCAGTACAAGAACTGGAGAGGTGAGGT TACTACTACATCCCGCAGTACAATAACTGGAGAGGTGAGGT < 41bp 0.700600954490185 0.315331626154085 0.22310373 0.21682382 prediction 0.40120190898037 Functional Loss - NDUFAF2 ENSG00000164182 CDS Human protein_coding chr5:60241196 chr5:60241199 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_98565 0 0 1 1 60241185 60241207 mRNA hsa-miR-145 NDUFAF2 miRanda miRanda
7869 chr17 43893884 43893884 1 + T C rs8077279 43893883 + 43893863 43893903 41 CACCTGCTGGCCCCGCAGCCCTGCGGGGCAGCTAGTGGTTC CACCTGCTGGCCCCGCAGCCCCGCGGGGCAGCTAGTGGTTC < 41bp 0.708389690855087 0.507811187072269 0.37586796 0.47578418 prediction 0.401157007565635 Functional Loss - CRHR1 ENSG00000120088 CDS Human protein_coding chr17:43893883 chr17:43893884 synonymous SNV . 0 22 hm5C_associated_SNPs_98580 0 0 0 1 43893877 43893896 mRNA hsa-miR-22 CRHR1 miRanda miRanda
7870 chr4 3318626 3318626 1 + G A HNSC 3318623 + 3318603 3318643 41 GGCTCCATTGAGCTTCCTTCCACGAGCTCCAACCTGGAGTC GGCTCCATTGAGCTTCCTTCCACAAGCTCCAACCTGGAGTC < 41bp 0.815337060833795 0.614760427801708 0.39305562 0.34559283 prediction 0.401153266064175 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3318623 chr4:3318626 synonymous SNV . 0 24 hm5C_associated_SNPs_98582 0 0 1 1 3318622 3318646 mRNA hsa-miR-127-3p RGS12 miRanda miRanda
7871 chr20 61288286 61288286 1 + C T LUSC 61288283 + 61288263 61288303 41 GCCTGCCTCTGCCTCACCTTCGTCAGCTACTTCGGGGGCTC GCCTGCCTCTGCCTCACCTTCGTTAGCTACTTCGGGGGCTC < 41bp 0.736937308792236 0.536378314110326 0.4707311 0.26937038 prediction 0.40111798936382 Functional Loss - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61288283 chr20:61288286 synonymous SNV . 0 24 hm5C_associated_SNPs_98597 0 0 1 3 61288272 61288295 mRNA hsa-miR-372 SLCO4A1 miRanda miRanda
7872 chr20 61288286 61288286 1 + C T LUSC 61288283 + 61288263 61288303 41 GCCTGCCTCTGCCTCACCTTCGTCAGCTACTTCGGGGGCTC GCCTGCCTCTGCCTCACCTTCGTTAGCTACTTCGGGGGCTC < 41bp 0.736937308792236 0.536378314110326 0.4707311 0.26937038 prediction 0.40111798936382 Functional Loss - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61288283 chr20:61288286 synonymous SNV . 0 24 hm5C_associated_SNPs_98597 0 0 1 3 61288271 61288295 mRNA hsa-miR-373 SLCO4A1 miRanda miRanda
7873 chr20 61288286 61288286 1 + C T LUSC 61288283 + 61288263 61288303 41 GCCTGCCTCTGCCTCACCTTCGTCAGCTACTTCGGGGGCTC GCCTGCCTCTGCCTCACCTTCGTTAGCTACTTCGGGGGCTC < 41bp 0.736937308792236 0.536378314110326 0.4707311 0.26937038 prediction 0.40111798936382 Functional Loss - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61288283 chr20:61288286 synonymous SNV . 0 24 hm5C_associated_SNPs_98597 0 0 1 3 61288286 61288310 mRNA hsa-miR-874 SLCO4A1 miRanda miRanda
7874 chr6 41318469 41318469 1 + A T SKCM 41318465 + 41318445 41318485 41 AGCTCAGGAGCCTGGATACCCAAAAAGCCACCTGCCACCTT AGCTCAGGAGCCTGGATACCCAAATAGCCACCTGCCACCTT < 41bp 0.892097383814941 0.691545068176526 0.09664452 0.31821728 prediction 0.401104631276832 Functional Loss - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41318465 chr6:41318469 nonsynonymous SNV 0.146 3 25 hm5C_associated_SNPs_98602 0 0 0 2 41318459 41318481 mRNA hsa-miR-449a NCR2 miRanda miRanda
7875 chr6 41318469 41318469 1 + A T SKCM 41318465 + 41318445 41318485 41 AGCTCAGGAGCCTGGATACCCAAAAAGCCACCTGCCACCTT AGCTCAGGAGCCTGGATACCCAAATAGCCACCTGCCACCTT < 41bp 0.892097383814941 0.691545068176526 0.09664452 0.31821728 prediction 0.401104631276832 Functional Loss - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41318465 chr6:41318469 nonsynonymous SNV 0.146 3 25 hm5C_associated_SNPs_98602 0 0 0 2 41318459 41318481 mRNA hsa-miR-449b NCR2 miRanda miRanda
7876 chr2 220397073 220397073 1 + G A rs113299906 220397070 + 220397050 220397090 41 CCCAGCCCTGGGGCAACTGCCGCGCAGAGAGTGAGCTCAGG CCCAGCCCTGGGGCAACTGCCGCACAGAGAGTGAGCTCAGG < 41bp 0.700536026524404 0.457320385759002 0.3593602 0.22236338 prediction 0.401072053048809 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220397070 chr2:220397073 nonsynonymous SNV 0.082 2 24 hm5C_associated_SNPs_98627 0 0 0 1 220397068 220397092 mRNA hsa-miR-125a-5p ACCN4 miRanda miRanda
7877 chr18 3895895 3895895 1 + C T rs188238031 3895893 + 3895873 3895913 41 TGAAAAGTCCACGCCAAATTCTCGGTATGTCACTGAAGACA TGAAAAGTCCACGCCAAATTCTTGGTATGTCACTGAAGACA < 41bp 0.700535889217827 0.455940251860353 0.03602937 0.067715496 prediction 0.401071778435654 Functional Loss - DLGAP1-AS3 ENSG00000263724 ncRNA_exonic Human antisense chr18:3895893 chr18:3895895 . . 0 23 hm5C_associated_SNPs_98628 0 0 0 3 3895886 3895908 mRNA hsa-miR-148a LOC201477 miRanda miRanda
7878 chr18 3895895 3895895 1 + C T rs188238031 3895893 + 3895873 3895913 41 TGAAAAGTCCACGCCAAATTCTCGGTATGTCACTGAAGACA TGAAAAGTCCACGCCAAATTCTTGGTATGTCACTGAAGACA < 41bp 0.700535889217827 0.455940251860353 0.03602937 0.067715496 prediction 0.401071778435654 Functional Loss - DLGAP1-AS3 ENSG00000263724 ncRNA_exonic Human antisense chr18:3895893 chr18:3895895 . . 0 23 hm5C_associated_SNPs_98628 0 0 0 3 3895886 3895908 mRNA hsa-miR-152 LOC201477 miRanda miRanda
7879 chr18 3895895 3895895 1 + C T rs188238031 3895893 + 3895873 3895913 41 TGAAAAGTCCACGCCAAATTCTCGGTATGTCACTGAAGACA TGAAAAGTCCACGCCAAATTCTTGGTATGTCACTGAAGACA < 41bp 0.700535889217827 0.455940251860353 0.03602937 0.067715496 prediction 0.401071778435654 Functional Loss - DLGAP1-AS3 ENSG00000263724 ncRNA_exonic Human antisense chr18:3895893 chr18:3895895 . . 0 23 hm5C_associated_SNPs_98628 0 0 0 3 3895885 3895908 mRNA hsa-miR-148b LOC201477 miRanda miRanda
7880 chr1 217842425 217842425 1 + G T THYM 217842422 + 217842402 217842442 41 CTCTACAATGCAATGGCTGTCAGGGTAAATATTTCTTCACT CTCTACAATGCAATGGCTGTCAGTGTAAATATTTCTTCACT < 41bp 0.700516093551651 0.331405464746921 0.9440197 0.19006526 prediction 0.401032187103303 Functional Loss - SPATA17 ENSG00000162814 CDS Human protein_coding chr1:217842422 chr1:217842425 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_98647 0 0 0 1 217842401 217842425 mRNA hsa-miR-542-3p SPATA17 miRanda miRanda
7881 chr15 44086188 44086188 1 + A C rs565283773 44086187 + 44086167 44086207 41 GTGAGGGGGTTACCCCTTCCCAGTGTTTTTTATTCCTGTGG GTGAGGGGGTTACCCCTTCCCCGTGTTTTTTATTCCTGTGG < 41bp 0.7004353557947 0.447896272051505 0.38208872 0.39270157 prediction 0.400870711589399 Functional Loss - SERF2-C15ORF63 ENSG00000140264 UTR3 Human protein_coding chr15:44086187 chr15:44086188 . . 0 22 hm5C_associated_SNPs_98738 0 0 1 3 44086173 44086194 mRNA hsa-miR-141 SERF2 miRanda miRanda
7882 chr15 44086188 44086188 1 + A C rs565283773 44086187 + 44086167 44086207 41 GTGAGGGGGTTACCCCTTCCCAGTGTTTTTTATTCCTGTGG GTGAGGGGGTTACCCCTTCCCCGTGTTTTTTATTCCTGTGG < 41bp 0.7004353557947 0.447896272051505 0.38208872 0.39270157 prediction 0.400870711589399 Functional Loss - SERF2-C15ORF63 ENSG00000140264 UTR3 Human protein_coding chr15:44086187 chr15:44086188 . . 0 22 hm5C_associated_SNPs_98738 0 0 1 3 44086170 44086194 mRNA hsa-miR-200a SERF2 miRanda miRanda
7883 chr15 44086188 44086188 1 + A C rs565283773 44086187 + 44086167 44086207 41 GTGAGGGGGTTACCCCTTCCCAGTGTTTTTTATTCCTGTGG GTGAGGGGGTTACCCCTTCCCCGTGTTTTTTATTCCTGTGG < 41bp 0.7004353557947 0.447896272051505 0.38208872 0.39270157 prediction 0.400870711589399 Functional Loss - SERF2-C15ORF63 ENSG00000140264 UTR3 Human protein_coding chr15:44086187 chr15:44086188 . . 0 22 hm5C_associated_SNPs_98738 0 0 1 3 44086171 44086194 mRNA hsa-miR-200a SERF2 miRanda miRanda
7884 chr18 77107872 77107872 1 + G T THYM 77107870 + 77107850 77107890 41 GCGGAACAGCTACAAGAGGTCGGCGGCACTCGGCCAGTTCG GCGGAACAGCTACAAGAGGTCGTCGGCACTCGGCCAGTTCG < 41bp 0.70041158106416 0.350756666174514 0.88297343 0.14882275 prediction 0.40082316212832 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77107870 chr18:77107872 nonsynonymous SNV 0.061 4 23 hm5C_associated_SNPs_98762 0 0 0 2 77107867 77107888 mRNA hsa-miR-193a-3p ATP9B miRanda miRanda
7885 chr18 77107872 77107872 1 + G T THYM 77107870 + 77107850 77107890 41 GCGGAACAGCTACAAGAGGTCGGCGGCACTCGGCCAGTTCG GCGGAACAGCTACAAGAGGTCGTCGGCACTCGGCCAGTTCG < 41bp 0.70041158106416 0.350756666174514 0.88297343 0.14882275 prediction 0.40082316212832 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77107870 chr18:77107872 nonsynonymous SNV 0.061 4 23 hm5C_associated_SNPs_98762 0 0 0 2 77107871 77107888 mRNA hsa-miR-193b ATP9B miRanda miRanda
7886 chr3 36534720 36534720 1 + C T OV 36534717 + 36534697 36534737 41 GACCTAAGGAAACGCAGCAACAGCGGTGAGTGAGGGAGTTG GACCTAAGGAAACGCAGCAACAGTGGTGAGTGAGGGAGTTG < 41bp 0.755176460369639 0.5547735099339 0.3611976 0.26569217 prediction 0.400805900871479 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36534717 chr3:36534720 synonymous SNV . 0 24 hm5C_associated_SNPs_98777 0 0 0 9 36534708 36534721 mRNA hsa-miR-30a STAC miRanda miRanda
7887 chr3 36534720 36534720 1 + C T OV 36534717 + 36534697 36534737 41 GACCTAAGGAAACGCAGCAACAGCGGTGAGTGAGGGAGTTG GACCTAAGGAAACGCAGCAACAGTGGTGAGTGAGGGAGTTG < 41bp 0.755176460369639 0.5547735099339 0.3611976 0.26569217 prediction 0.400805900871479 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36534717 chr3:36534720 synonymous SNV . 0 24 hm5C_associated_SNPs_98777 0 0 0 9 36534707 36534721 mRNA hsa-miR-30c STAC miRanda miRanda
7888 chr3 36534720 36534720 1 + C T OV 36534717 + 36534697 36534737 41 GACCTAAGGAAACGCAGCAACAGCGGTGAGTGAGGGAGTTG GACCTAAGGAAACGCAGCAACAGTGGTGAGTGAGGGAGTTG < 41bp 0.755176460369639 0.5547735099339 0.3611976 0.26569217 prediction 0.400805900871479 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36534717 chr3:36534720 synonymous SNV . 0 24 hm5C_associated_SNPs_98777 0 0 0 9 36534708 36534721 mRNA hsa-miR-30d STAC miRanda miRanda
7889 chr3 36534720 36534720 1 + C T OV 36534717 + 36534697 36534737 41 GACCTAAGGAAACGCAGCAACAGCGGTGAGTGAGGGAGTTG GACCTAAGGAAACGCAGCAACAGTGGTGAGTGAGGGAGTTG < 41bp 0.755176460369639 0.5547735099339 0.3611976 0.26569217 prediction 0.400805900871479 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36534717 chr3:36534720 synonymous SNV . 0 24 hm5C_associated_SNPs_98777 0 0 0 9 36534714 36534721 mRNA hsa-miR-1 STAC miRanda miRanda
7890 chr3 36534720 36534720 1 + C T OV 36534717 + 36534697 36534737 41 GACCTAAGGAAACGCAGCAACAGCGGTGAGTGAGGGAGTTG GACCTAAGGAAACGCAGCAACAGTGGTGAGTGAGGGAGTTG < 41bp 0.755176460369639 0.5547735099339 0.3611976 0.26569217 prediction 0.400805900871479 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36534717 chr3:36534720 synonymous SNV . 0 24 hm5C_associated_SNPs_98777 0 0 0 9 36534708 36534721 mRNA hsa-miR-30b STAC miRanda miRanda
7891 chr3 36534720 36534720 1 + C T OV 36534717 + 36534697 36534737 41 GACCTAAGGAAACGCAGCAACAGCGGTGAGTGAGGGAGTTG GACCTAAGGAAACGCAGCAACAGTGGTGAGTGAGGGAGTTG < 41bp 0.755176460369639 0.5547735099339 0.3611976 0.26569217 prediction 0.400805900871479 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36534717 chr3:36534720 synonymous SNV . 0 24 hm5C_associated_SNPs_98777 0 0 0 9 36534714 36534721 mRNA hsa-miR-190 STAC miRanda miRanda
7892 chr3 36534720 36534720 1 + C T OV 36534717 + 36534697 36534737 41 GACCTAAGGAAACGCAGCAACAGCGGTGAGTGAGGGAGTTG GACCTAAGGAAACGCAGCAACAGTGGTGAGTGAGGGAGTTG < 41bp 0.755176460369639 0.5547735099339 0.3611976 0.26569217 prediction 0.400805900871479 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36534717 chr3:36534720 synonymous SNV . 0 24 hm5C_associated_SNPs_98777 0 0 0 9 36534714 36534721 mRNA hsa-miR-206 STAC miRanda miRanda
7893 chr3 36534720 36534720 1 + C T OV 36534717 + 36534697 36534737 41 GACCTAAGGAAACGCAGCAACAGCGGTGAGTGAGGGAGTTG GACCTAAGGAAACGCAGCAACAGTGGTGAGTGAGGGAGTTG < 41bp 0.755176460369639 0.5547735099339 0.3611976 0.26569217 prediction 0.400805900871479 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36534717 chr3:36534720 synonymous SNV . 0 24 hm5C_associated_SNPs_98777 0 0 0 9 36534707 36534721 mRNA hsa-miR-30e STAC miRanda miRanda
7894 chr3 36534720 36534720 1 + C T OV 36534717 + 36534697 36534737 41 GACCTAAGGAAACGCAGCAACAGCGGTGAGTGAGGGAGTTG GACCTAAGGAAACGCAGCAACAGTGGTGAGTGAGGGAGTTG < 41bp 0.755176460369639 0.5547735099339 0.3611976 0.26569217 prediction 0.400805900871479 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36534717 chr3:36534720 synonymous SNV . 0 24 hm5C_associated_SNPs_98777 0 0 0 9 36534715 36534721 mRNA hsa-miR-190b STAC miRanda miRanda
7895 chr17 3564445 3564445 1 + G A rs373151543 3564442 + 3564422 3564462 41 AGCTGCTCCTTACCCAGCATCTGGAGTACAGGACATAGCTC AGCTGCTCCTTACCCAGCATCTGAAGTACAGGACATAGCTC < 41bp 0.700368791017107 0.450049198396743 0.7926167 0.37380153 prediction 0.400737582034214 Functional Loss - CTNS ENSG00000040531 UTR3 Human protein_coding chr17:3564442 chr17:3564445 . . 0 24 hm5C_associated_SNPs_98815 0 0 0 1 3564432 3564454 mRNA hsa-miR-486-5p CTNS miRanda miRanda
7896 chr19 58718313 58718313 1 + C T UCEC 58718311 + 58718291 58718331 41 CAGGTGACCCTGAGGCCGCGCGCCAGAGGTTCCGGCAGTTC CAGGTGACCCTGAGGCCGCGCGTCAGAGGTTCCGGCAGTTC < 41bp 0.730735136380286 0.530502356958144 0.3271163 0.296901 prediction 0.400465558844284 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58718311 chr19:58718313 synonymous SNV . 0 23 hm5C_associated_SNPs_98971 0 0 0 1 58718313 58718336 mRNA hsa-miR-191 ZNF274 miRanda miRanda
7897 chr4 981734 981734 1 - C T rs147490060 981737 - 981717 981757 41 AGACCCTGCCCGCCGCCCACCTGGTGGTGACAAGCTCCAGC AGACCCTGCCCGCCGCCCACCTGATGGTGACAAGCTCCAGC < 41bp 0.700212462253729 0.475822647211663 0.59291226 0.4037274 prediction 0.400424924507458 Functional Loss - IDUA ENSG00000127415 CDS Human protein_coding chr4:981737 chr4:981734 nonsynonymous SNV 0.887 2 24 hm5C_associated_SNPs_98993 2 0 0 1 981717 981738 mRNA hsa-miR-378 SLC26A1 miRanda miRanda
7898 chr8 39782849 39782849 1 + G T LUAD 39782845 + 39782825 39782865 41 CAGGCCAAAGCAGCGTCTTTCAGTGCTTTGACGTCCTGCTG CAGGCCAAAGCAGCGTCTTTCAGTTCTTTGACGTCCTGCTG < 41bp 0.744893517845811 0.54473068203394 0.8644517 0.5628043 prediction 0.400325671623742 Functional Loss - IDO1 ENSG00000131203 CDS Human protein_coding chr8:39782845 chr8:39782849 nonsynonymous SNV 0.397 4 25 hm5C_associated_SNPs_99046 0 0 0 1 39782846 39782866 mRNA hsa-miR-214 IDO1 miRanda miRanda
7899 chr18 33738800 33738800 1 + A T BLCA 33738798 + 33738778 33738818 41 TATTATATTTTCTATTCTAGCAAGATAGTGATCTTCCAGAA TATTATATTTTCTATTCTAGCATGATAGTGATCTTCCAGAA < 41bp 0.728745179579069 0.528624877008437 0.43283683 0.22620097 prediction 0.400240605141265 Functional Loss - ELP2 ENSG00000134759 CDS Human protein_coding chr18:33738798 chr18:33738800 nonsynonymous SNV 0.083 0 23 hm5C_associated_SNPs_99092 0 0 1 1 33738798 33738813 mRNA hsa-miR-224 ELP2 miRanda miRanda
7900 chr2 98351750 98351750 1 + G A LIHC 98351747 + 98351727 98351767 41 TGGCCATCAAGGTGCTGAAGCAGGGCACGGAGAAGGCAGAC TGGCCATCAAGGTGCTGAAGCAGAGCACGGAGAAGGCAGAC < 41bp 0.832791944472506 0.632685148045955 0.88933706 0.82700783 prediction 0.400213592853103 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98351747 chr2:98351750 nonsynonymous SNV 0.926 1 24 hm5C_associated_SNPs_99099 0 0 0 1 98351747 98351768 mRNA hsa-miR-346 ZAP70 miRanda miRanda
7901 chr6 39040654 39040654 1 + A C rs2235868 39040650 + 39040630 39040670 41 TCCCTCAGACACCTGCACTGCACCAGGAACTACATCCACCT TCCCTCAGACACCTGCACTGCACCCGGAACTACATCCACCT < 41bp 0.700081068895962 0.259748794389582 0.022611588 0.037359983 prediction 0.400162137791924 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39040650 chr6:39040654 synonymous SNV . 0 25 hm5C_associated_SNPs_99122 0 0 0 1 39040647 39040672 mRNA hsa-miR-125a-3p GLP1R miRanda miRanda
7902 chrX 117819877 117819877 1 + G A rs191796869 117819874 + 117819854 117819894 41 ATATACATGGAGTGTTTCTTCTCGACACCAAAATTTTCATG ATATACATGGAGTGTTTCTTCTCAACACCAAAATTTTCATG < 41bp 0.763801453725076 0.563736234243912 0.19390309 0.040750504 prediction 0.400130438962328 Functional Loss - DOCK11 ENSG00000147251 UTR3 Human protein_coding chrX:117819874 chrX:117819877 . . 0 24 hm5C_associated_SNPs_99132 0 0 0 1 117819866 117819887 mRNA hsa-miR-9 DOCK11 miRanda miRanda
7903 chr17 15644474 15644474 1 + C A ESCA 15644470 + 15644450 15644490 41 CAGGGACCTGAGCCGCATCACTGCCATCCTCCTCCTGTGTC CAGGGACCTGAGCCGCATCACTGCAATCCTCCTCCTGTGTC < 41bp 0.50578701801663 0.870923144626515 0.15798002 0.383938 prediction 0.730272253219771 Functional Gain - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15644470 chr17:15644474 synonymous SNV . 0 25 hm5C_associated_SNPs_99191 0 0 0 4 15644452 15644475 mRNA hsa-miR-34a TBC1D26 miRanda miRanda
7904 chr17 15644474 15644474 1 + C A ESCA 15644470 + 15644450 15644490 41 CAGGGACCTGAGCCGCATCACTGCCATCCTCCTCCTGTGTC CAGGGACCTGAGCCGCATCACTGCAATCCTCCTCCTGTGTC < 41bp 0.50578701801663 0.870923144626515 0.15798002 0.383938 prediction 0.730272253219771 Functional Gain - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15644470 chr17:15644474 synonymous SNV . 0 25 hm5C_associated_SNPs_99191 0 0 0 4 15644454 15644475 mRNA hsa-miR-34c-5p TBC1D26 miRanda miRanda
7905 chr17 15644474 15644474 1 + C A ESCA 15644470 + 15644450 15644490 41 CAGGGACCTGAGCCGCATCACTGCCATCCTCCTCCTGTGTC CAGGGACCTGAGCCGCATCACTGCAATCCTCCTCCTGTGTC < 41bp 0.50578701801663 0.870923144626515 0.15798002 0.383938 prediction 0.730272253219771 Functional Gain - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15644470 chr17:15644474 synonymous SNV . 0 25 hm5C_associated_SNPs_99191 0 0 0 4 15644452 15644475 mRNA hsa-miR-449a TBC1D26 miRanda miRanda
7906 chr17 15644474 15644474 1 + C A ESCA 15644470 + 15644450 15644490 41 CAGGGACCTGAGCCGCATCACTGCCATCCTCCTCCTGTGTC CAGGGACCTGAGCCGCATCACTGCAATCCTCCTCCTGTGTC < 41bp 0.50578701801663 0.870923144626515 0.15798002 0.383938 prediction 0.730272253219771 Functional Gain - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15644470 chr17:15644474 synonymous SNV . 0 25 hm5C_associated_SNPs_99191 0 0 0 4 15644452 15644475 mRNA hsa-miR-449b TBC1D26 miRanda miRanda
7907 chr1 45268724 45268724 1 + C A rs17880471 45268720 + 45268700 45268740 41 GTTCACTACACGCTGCCTGCCAGCCTCTCACTGCCTGCCCG GTTCACTACACGCTGCCTGCCAGCATCTCACTGCCTGCCCG < 41bp 0.499782027606826 0.858662571739958 0.08532131 0.18132868 prediction 0.717325143479915 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45268720 chr1:45268724 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_99234 0 0 0 4 45268715 45268735 mRNA hsa-miR-34a PLK3 miRanda miRanda
7908 chr1 45268724 45268724 1 + C A rs17880471 45268720 + 45268700 45268740 41 GTTCACTACACGCTGCCTGCCAGCCTCTCACTGCCTGCCCG GTTCACTACACGCTGCCTGCCAGCATCTCACTGCCTGCCCG < 41bp 0.499782027606826 0.858662571739958 0.08532131 0.18132868 prediction 0.717325143479915 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45268720 chr1:45268724 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_99234 0 0 0 4 45268715 45268735 mRNA hsa-miR-34c-5p PLK3 miRanda miRanda
7909 chr1 45268724 45268724 1 + C A rs17880471 45268720 + 45268700 45268740 41 GTTCACTACACGCTGCCTGCCAGCCTCTCACTGCCTGCCCG GTTCACTACACGCTGCCTGCCAGCATCTCACTGCCTGCCCG < 41bp 0.499782027606826 0.858662571739958 0.08532131 0.18132868 prediction 0.717325143479915 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45268720 chr1:45268724 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_99234 0 0 0 4 45268714 45268735 mRNA hsa-miR-449a PLK3 miRanda miRanda
7910 chr1 45268724 45268724 1 + C A rs17880471 45268720 + 45268700 45268740 41 GTTCACTACACGCTGCCTGCCAGCCTCTCACTGCCTGCCCG GTTCACTACACGCTGCCTGCCAGCATCTCACTGCCTGCCCG < 41bp 0.499782027606826 0.858662571739958 0.08532131 0.18132868 prediction 0.717325143479915 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45268720 chr1:45268724 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_99234 0 0 0 4 45268714 45268735 mRNA hsa-miR-449b PLK3 miRanda miRanda
7911 chr3 119219634 119219634 1 + C A GBM 119219630 + 119219610 119219650 41 GCTGGGTGTATGGGGGAATACCAGCTTTTATTCATGCTAAA GCTGGGTGTATGGGGGAATACCAGATTTTATTCATGCTAAA < 41bp 0.500952915768669 0.855424727724955 0.33309004 0.5054564 prediction 0.708943623912571 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119219630 chr3:119219634 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99279 0 0 1 4 119219616 119219638 mRNA hsa-miR-320a C3orf1 miRanda miRanda
7912 chr3 119219634 119219634 1 + C A GBM 119219630 + 119219610 119219650 41 GCTGGGTGTATGGGGGAATACCAGCTTTTATTCATGCTAAA GCTGGGTGTATGGGGGAATACCAGATTTTATTCATGCTAAA < 41bp 0.500952915768669 0.855424727724955 0.33309004 0.5054564 prediction 0.708943623912571 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119219630 chr3:119219634 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99279 0 0 1 4 119219616 119219638 mRNA hsa-miR-320b C3orf1 miRanda miRanda
7913 chr3 119219634 119219634 1 + C A GBM 119219630 + 119219610 119219650 41 GCTGGGTGTATGGGGGAATACCAGCTTTTATTCATGCTAAA GCTGGGTGTATGGGGGAATACCAGATTTTATTCATGCTAAA < 41bp 0.500952915768669 0.855424727724955 0.33309004 0.5054564 prediction 0.708943623912571 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119219630 chr3:119219634 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99279 0 0 1 4 119219618 119219638 mRNA hsa-miR-320c C3orf1 miRanda miRanda
7914 chr3 119219634 119219634 1 + C A GBM 119219630 + 119219610 119219650 41 GCTGGGTGTATGGGGGAATACCAGCTTTTATTCATGCTAAA GCTGGGTGTATGGGGGAATACCAGATTTTATTCATGCTAAA < 41bp 0.500952915768669 0.855424727724955 0.33309004 0.5054564 prediction 0.708943623912571 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119219630 chr3:119219634 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99279 0 0 1 4 119219619 119219638 mRNA hsa-miR-320d C3orf1 miRanda miRanda
7915 chr12 100904815 100904815 1 + C A LUAD 100904811 + 100904791 100904831 41 GATGCCTGTAACAAAGAAGCCCCGCATGGGCGCGTCAGCAG GATGCCTGTAACAAAGAAGCCCCGAATGGGCGCGTCAGCAG < 41bp 0.515856469812321 0.868242201185972 0.018738031 0.013148278 prediction 0.704771462747301 Functional Gain - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100904811 chr12:100904815 synonymous SNV . 0 25 hm5C_associated_SNPs_99315 0 0 0 1 100904812 100904833 mRNA hsa-miR-370 NR1H4 miRanda miRanda
7916 chr20 32341223 32341223 1 + C A STAD 32341219 + 32341199 32341239 41 ACTGGGGATGCAGCCCTACCCACCCCTAGAGGTGAGCAGAG ACTGGGGATGCAGCCCTACCCACCACTAGAGGTGAGCAGAG < 41bp 0.526649014539888 0.878538554798555 0.15023896 0.2952702 prediction 0.703779080517335 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32341219 chr20:32341223 synonymous SNV . 0 25 hm5C_associated_SNPs_99331 0 0 1 2 32341215 32341229 mRNA hsa-miR-96 ZNF341 miRanda miRanda
7917 chr20 32341223 32341223 1 + C A STAD 32341219 + 32341199 32341239 41 ACTGGGGATGCAGCCCTACCCACCCCTAGAGGTGAGCAGAG ACTGGGGATGCAGCCCTACCCACCACTAGAGGTGAGCAGAG < 41bp 0.526649014539888 0.878538554798555 0.15023896 0.2952702 prediction 0.703779080517335 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32341219 chr20:32341223 synonymous SNV . 0 25 hm5C_associated_SNPs_99331 0 0 1 2 32341216 32341229 mRNA hsa-miR-1271 ZNF341 miRanda miRanda
7918 chr16 4845805 4845805 1 + T G rs73513279 4845802 + 4845782 4845822 41 TGGGGAGACTGAAGAGCCACCAGTTTTTCCAGTCCACATGG TGGGGAGACTGAAGAGCCACCAGGTTTTCCAGTCCACATGG < 41bp 0.493564498109702 0.847346272834413 0.15427715 0.8909303 prediction 0.694692545668826 Functional Gain - SMIM22 ENSG00000267795 CDS Human protein_coding chr16:4845802 chr16:4845805 nonsynonymous SNV 0.617 0 24 hm5C_associated_SNPs_99438 0 0 0 1 4845794 4845817 mRNA hsa-miR-184 LOC440335 miRanda miRanda
7919 chr1 148932835 148932835 1 + C A LUAD 148932831 + 148932811 148932851 41 CCCGCCAGGCCTCCATAGAGCTGCCCAGCATGGCTGCATCC CCCGCCAGGCCTCCATAGAGCTGCACAGCATGGCTGCATCC < 41bp 0.510599252204029 0.857839001534468 0.091608256 0.08935475 prediction 0.694479498660879 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932831 chr1:148932835 . . 0 25 hm5C_associated_SNPs_99443 0 0 1 2 148932823 148932848 mRNA hsa-miR-103 LOC645166 miRanda miRanda
7920 chr1 148932835 148932835 1 + C A LUAD 148932831 + 148932811 148932851 41 CCCGCCAGGCCTCCATAGAGCTGCCCAGCATGGCTGCATCC CCCGCCAGGCCTCCATAGAGCTGCACAGCATGGCTGCATCC < 41bp 0.510599252204029 0.857839001534468 0.091608256 0.08935475 prediction 0.694479498660879 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932831 chr1:148932835 . . 0 25 hm5C_associated_SNPs_99443 0 0 1 2 148932823 148932848 mRNA hsa-miR-107 LOC645166 miRanda miRanda
7921 chr4 74277725 74277725 1 + C A LUAD 74277721 + 74277701 74277741 41 TTTTCTTTTTAGGGCAGTAGCTCGCCTGAGCCAGAGATTTC TTTTCTTTTTAGGGCAGTAGCTCGACTGAGCCAGAGATTTC < 41bp 0.489038428077847 0.84711940809893 0.023806304 0.3085668 prediction 0.69423881619786 Functional Gain - ALB ENSG00000163631 CDS Human protein_coding chr4:74277721 chr4:74277725 synonymous SNV . 0 25 hm5C_associated_SNPs_99446 0 0 1 3 74277713 74277733 mRNA hsa-miR-24 ALB miRanda miRanda
7922 chr4 74277725 74277725 1 + C A LUAD 74277721 + 74277701 74277741 41 TTTTCTTTTTAGGGCAGTAGCTCGCCTGAGCCAGAGATTTC TTTTCTTTTTAGGGCAGTAGCTCGACTGAGCCAGAGATTTC < 41bp 0.489038428077847 0.84711940809893 0.023806304 0.3085668 prediction 0.69423881619786 Functional Gain - ALB ENSG00000163631 CDS Human protein_coding chr4:74277721 chr4:74277725 synonymous SNV . 0 25 hm5C_associated_SNPs_99446 0 0 1 3 74277713 74277735 mRNA hsa-miR-149 ALB miRanda miRanda
7923 chr4 74277725 74277725 1 + C A LUAD 74277721 + 74277701 74277741 41 TTTTCTTTTTAGGGCAGTAGCTCGCCTGAGCCAGAGATTTC TTTTCTTTTTAGGGCAGTAGCTCGACTGAGCCAGAGATTTC < 41bp 0.489038428077847 0.84711940809893 0.023806304 0.3085668 prediction 0.69423881619786 Functional Gain - ALB ENSG00000163631 CDS Human protein_coding chr4:74277721 chr4:74277725 synonymous SNV . 0 25 hm5C_associated_SNPs_99446 0 0 1 3 74277716 74277740 mRNA hsa-miR-216b ALB miRanda miRanda
7924 chr17 6348467 6348467 1 + C A OV 6348463 + 6348443 6348483 41 TGGCAGAACATGGGGACCTCCGTGCGCCGGAGATCTCTCCA TGGCAGAACATGGGGACCTCCGTGAGCCGGAGATCTCTCCA < 41bp 0.509295621768213 0.856397094420823 0.86817396 0.89610475 prediction 0.694202945305221 Functional Gain - PIMREG ENSG00000129195 CDS Human protein_coding chr17:6348463 chr17:6348467 nonsynonymous SNV 0.007 1 25 hm5C_associated_SNPs_99448 0 0 0 1 6348462 6348483 mRNA hsa-miR-185 FAM64A miRanda miRanda
7925 chr16 22926542 22926542 1 + C A OV 22926538 + 22926518 22926558 41 GCCATCCGCATCGGCATGTACGTGCTGCACCTGGAGAGCTG GCCATCCGCATCGGCATGTACGTGATGCACCTGGAGAGCTG < 41bp 0.506517424916829 0.851717872470093 0.20990637 0.36466703 prediction 0.690400895106526 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926538 chr16:22926542 nonsynonymous SNV 0.959 1 25 hm5C_associated_SNPs_99496 0 0 0 1 22926530 22926551 mRNA hsa-miR-148b HS3ST2 miRanda miRanda
7926 chr22 32215120 32215120 1 + C A THCA 32215116 + 32215096 32215136 41 TGTTCGACCTGGTGGATACACGCCCCAGAGAGCACTGATTA TGTTCGACCTGGTGGATACACGCCACAGAGAGCACTGATTA < 41bp 0.517219608709376 0.861608323382266 0.20483801 0.10521704 prediction 0.688777429345781 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32215116 chr22:32215120 synonymous SNV . 0 25 hm5C_associated_SNPs_99515 0 0 1 2 32215104 32215126 mRNA hsa-miR-330-5p DEPDC5 miRanda miRanda
7927 chr22 32215120 32215120 1 + C A THCA 32215116 + 32215096 32215136 41 TGTTCGACCTGGTGGATACACGCCCCAGAGAGCACTGATTA TGTTCGACCTGGTGGATACACGCCACAGAGAGCACTGATTA < 41bp 0.517219608709376 0.861608323382266 0.20483801 0.10521704 prediction 0.688777429345781 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32215116 chr22:32215120 synonymous SNV . 0 25 hm5C_associated_SNPs_99515 0 0 1 2 32215107 32215126 mRNA hsa-miR-326 DEPDC5 miRanda miRanda
7928 chr1 201861016 201861016 1 + C A rs2279681 201861012 + 201860992 201861032 41 TGCTGCCCCTTCAGTGATGCCAACCTTGGGAGATGCCCTCA TGCTGCCCCTTCAGTGATGCCAACATTGGGAGATGCCCTCA < 41bp 0.50262385637755 0.84563989258797 0.012760669 0.027886182 prediction 0.686032072420841 Functional Gain - SHISA4 ENSG00000198892 UTR3 Human protein_coding chr1:201861012 chr1:201861016 . . 0 25 hm5C_associated_SNPs_99577 0 0 0 1 201861003 201861024 mRNA hsa-miR-150 SHISA4 miRanda miRanda
7929 chr16 2257253 2257253 1 + C A STAD 2257249 + 2257229 2257269 41 CCACATCTGGGACTTGAAAACAGACCACAACGAGCAGCTGA CCACATCTGGGACTTGAAAACAGAACACAACGAGCAGCTGA < 41bp 0.5082132298242 0.851095672186551 0.34757254 0.2929676 prediction 0.685764884724703 Functional Gain - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2257249 chr16:2257253 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99582 0 0 1 1 2257240 2257259 mRNA hsa-miR-599 MLST8 miRanda miRanda
7930 chr5 35876346 35876346 1 + C A LUAD 35876342 + 35876322 35876362 41 GGGAATGTCAGTGCATGTGACGCCCCTATTCTCTCCTCTTC GGGAATGTCAGTGCATGTGACGCCACTATTCTCTCCTCTTC < 41bp 0.485137199087197 0.840962505674758 0.10501614 0.18915418 prediction 0.681925011349515 Functional Gain - IL7R ENSG00000168685 CDS Human protein_coding chr5:35876342 chr5:35876346 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99658 0 0 0 1 35876336 35876358 mRNA hsa-miR-185 IL7R miRanda miRanda
7931 chrX 77378707 77378707 1 + T G UCEC 77378704 + 77378684 77378724 41 CTGTGTAGATTGGCACTTCTCTGTTTGATGAAGAGGGAGCC CTGTGTAGATTGGCACTTCTCTGGTTGATGAAGAGGGAGCC < 41bp 0.495045530479647 0.840656891752374 0.03525114 0.1283746 prediction 0.681313783504748 Functional Gain - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378704 chrX:77378707 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_99673 0 0 1 2 77378704 77378727 mRNA hsa-miR-133a PGK1 miRanda miRanda
7932 chrX 77378707 77378707 1 + T G UCEC 77378704 + 77378684 77378724 41 CTGTGTAGATTGGCACTTCTCTGTTTGATGAAGAGGGAGCC CTGTGTAGATTGGCACTTCTCTGGTTGATGAAGAGGGAGCC < 41bp 0.495045530479647 0.840656891752374 0.03525114 0.1283746 prediction 0.681313783504748 Functional Gain - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378704 chrX:77378707 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_99673 0 0 1 2 77378704 77378727 mRNA hsa-miR-133b PGK1 miRanda miRanda
7933 chr5 35876451 35876451 1 + C A COAD 35876447 + 35876427 35876467 41 AGCCTTGGGACTACAAACAGCACGCTGCCCCCTCCATTTTC AGCCTTGGGACTACAAACAGCACGATGCCCCCTCCATTTTC < 41bp 0.505947797866933 0.845998545766032 0.018987685 0.0667696 prediction 0.680101495798197 Functional Gain - IL7R ENSG00000168685 CDS Human protein_coding chr5:35876447 chr5:35876451 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_99701 0 0 0 1 35876451 35876473 mRNA hsa-miR-185 IL7R miRanda miRanda
7934 chr1 10535052 10535052 1 + C A rs12068754 10535048 + 10535028 10535068 41 CGTCCTCGGAGCAGGCAGAGCAGCCGAGCCAGGTAAGGGGA CGTCCTCGGAGCAGGCAGAGCAGCAGAGCCAGGTAAGGGGA < 41bp 0.513752501581113 0.852820332247131 0.8998524 0.90415615 prediction 0.678135661332036 Functional Gain - PEX14 ENSG00000142655 CDS Human protein_coding chr1:10535048 chr1:10535052 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99745 0 0 1 1 10535037 10535059 mRNA hsa-miR-149 PEX14 miRanda miRanda
7935 chr3 135789339 135789339 1 + C A KIRC 135789335 + 135789315 135789355 41 TTCAGGATGTGGTGGATACCCACCCTGGTCTCACGTTCCTG TTCAGGATGTGGTGGATACCCACCATGGTCTCACGTTCCTG < 41bp 0.454714804157528 0.838343475248963 0.042517394 0.0769901 prediction 0.676686950497926 Functional Gain - PPP2R3A ENSG00000073711 CDS Human protein_coding chr3:135789335 chr3:135789339 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99772 0 0 0 1 135789338 135789356 mRNA hsa-miR-873 PPP2R3A miRanda miRanda
7936 chr19 58773097 58773097 1 + T G THYM 58773094 + 58773074 58773114 41 CTCATACACCAGAGAACACACACTGGAGAAAAGCCCTTCGA CTCATACACCAGAGAACACACACGGGAGAAAAGCCCTTCGA < 41bp 0.49367341276142 0.837508139973898 0.043117613 0.10004425 prediction 0.675016279947796 Functional Gain - ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58773094 chr19:58773097 synonymous SNV . 0 24 hm5C_associated_SNPs_99807 0 0 1 2 58773078 58773100 mRNA hsa-miR-199a-5p ZNF544 miRanda miRanda
7937 chr19 58773097 58773097 1 + T G THYM 58773094 + 58773074 58773114 41 CTCATACACCAGAGAACACACACTGGAGAAAAGCCCTTCGA CTCATACACCAGAGAACACACACGGGAGAAAAGCCCTTCGA < 41bp 0.49367341276142 0.837508139973898 0.043117613 0.10004425 prediction 0.675016279947796 Functional Gain - ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58773094 chr19:58773097 synonymous SNV . 0 24 hm5C_associated_SNPs_99807 0 0 1 2 58773077 58773100 mRNA hsa-miR-199b-5p ZNF544 miRanda miRanda
7938 chr19 36206307 36206307 1 + C A PRAD 36206303 + 36206283 36206323 41 CCCCTTGGTTGGTGGGGGGCCAGCCTGCCCTGTGGAGCATC CCCCTTGGTTGGTGGGGGGCCAGCATGCCCTGTGGAGCATC < 41bp 0.535116190981102 0.872617100848704 0.32320467 0.34079278 prediction 0.675001819735203 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36206303 chr19:36206307 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_99808 0 0 0 2 36206303 36206326 mRNA hsa-miR-28-5p ZBTB32 miRanda miRanda
7939 chr19 36206307 36206307 1 + C A PRAD 36206303 + 36206283 36206323 41 CCCCTTGGTTGGTGGGGGGCCAGCCTGCCCTGTGGAGCATC CCCCTTGGTTGGTGGGGGGCCAGCATGCCCTGTGGAGCATC < 41bp 0.535116190981102 0.872617100848704 0.32320467 0.34079278 prediction 0.675001819735203 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36206303 chr19:36206307 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_99808 0 0 0 2 36206302 36206330 mRNA hsa-miR-214 ZBTB32 miRanda miRanda
7940 chr11 6415741 6415741 1 + T G OV 6415738 + 6415718 6415758 41 GCTACTCTTTGTGCCCAGCTCTCTGCCCGTGCTGACAGCCC GCTACTCTTTGTGCCCAGCTCTCGGCCCGTGCTGACAGCCC < 41bp 0.516085134739948 0.853136222945079 0.32277977 0.3815284 prediction 0.674102176410262 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6415738 chr11:6415741 synonymous SNV . 0 24 hm5C_associated_SNPs_99823 0 0 1 1 6415724 6415745 mRNA hsa-miR-31 SMPD1 miRanda miRanda
7941 chr3 36524582 36524582 1 + C A STAD 36524578 + 36524558 36524598 41 GCACCCCAGCGGTGCATGGGCAAGCTGGTAAGGGCTTGTGC GCACCCCAGCGGTGCATGGGCAAGATGGTAAGGGCTTGTGC < 41bp 0.527232449126891 0.864203438196447 0.49776673 0.4917099 prediction 0.673941978139113 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36524578 chr3:36524582 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_99829 0 0 0 1 36524566 36524584 mRNA hsa-miR-96 STAC miRanda miRanda
7942 chr16 67861893 67861893 1 + C A STAD 67861889 + 67861869 67861909 41 ACCTCGAGAGCCAGAGCCTGCAAGCTAGGAACTTGTGGGCA ACCTCGAGAGCCAGAGCCTGCAAGATAGGAACTTGTGGGCA < 41bp 0.518960440782327 0.854583446860566 0.8605192 0.88678163 prediction 0.671246012156478 Functional Gain - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67861889 chr16:67861893 nonsynonymous SNV 0.775 1 25 hm5C_associated_SNPs_99877 0 0 0 1 67861881 67861900 mRNA hsa-miR-384 TSNAXIP1 miRanda miRanda
7943 chr15 89659617 89659617 1 + C A UCEC 89659613 + 89659593 89659633 41 CCGTGTTTGATGGAGTGAAGCTGGCTGCAGTGGCTGCTGTG CCGTGTTTGATGGAGTGAAGCTGGATGCAGTGGCTGCTGTG < 41bp 0.533000096222617 0.867787639533681 0.8043175 0.8911996 prediction 0.669575086622129 Functional Gain - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89659613 chr15:89659617 nonsynonymous SNV 0.959 4 25 hm5C_associated_SNPs_99919 0 0 1 2 89659610 89659631 mRNA hsa-miR-29a ABHD2 miRanda miRanda
7944 chr15 89659617 89659617 1 + C A UCEC 89659613 + 89659593 89659633 41 CCGTGTTTGATGGAGTGAAGCTGGCTGCAGTGGCTGCTGTG CCGTGTTTGATGGAGTGAAGCTGGATGCAGTGGCTGCTGTG < 41bp 0.533000096222617 0.867787639533681 0.8043175 0.8911996 prediction 0.669575086622129 Functional Gain - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89659613 chr15:89659617 nonsynonymous SNV 0.959 4 25 hm5C_associated_SNPs_99919 0 0 1 2 89659609 89659631 mRNA hsa-miR-29b ABHD2 miRanda miRanda
7945 chr2 106510164 106510164 1 + C A rs141859585 106510160 + 106510140 106510180 41 GTGCGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCT GTGCGATGGCAGTGAGGAGACTGCACAGTGCCTTTGGGGCT < 41bp 0.527786197171747 0.861989052725265 0.3181337 0.4127087 prediction 0.668405711107037 Functional Gain - NCK2 ENSG00000071051 UTR3 Human protein_coding chr2:106510160 chr2:106510164 . . 0 25 hm5C_associated_SNPs_99941 0 0 1 2 106510155 106510174 mRNA hsa-miR-124 NCK2 miRanda miRanda
7946 chr2 106510164 106510164 1 + C A rs141859585 106510160 + 106510140 106510180 41 GTGCGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCT GTGCGATGGCAGTGAGGAGACTGCACAGTGCCTTTGGGGCT < 41bp 0.527786197171747 0.861989052725265 0.3181337 0.4127087 prediction 0.668405711107037 Functional Gain - NCK2 ENSG00000071051 UTR3 Human protein_coding chr2:106510160 chr2:106510164 . . 0 25 hm5C_associated_SNPs_99941 0 0 1 2 106510154 106510174 mRNA hsa-miR-506 NCK2 miRanda miRanda
7947 chr5 121786541 121786541 1 + C A PRAD 121786537 + 121786517 121786557 41 AAGAGGGAACTGAAGTTAGCCAGGCTGAGACAGCTGATGCA AAGAGGGAACTGAAGTTAGCCAGGATGAGACAGCTGATGCA < 41bp 0.488402555640386 0.833755464415076 0.5070382 0.5332552 prediction 0.667510928830152 Functional Gain - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786537 chr5:121786541 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_99969 0 0 0 1 121786541 121786564 mRNA hsa-miR-504 SNCAIP miRanda miRanda
7948 chrX 152616163 152616163 1 + C A rs782490154 152616159 + 152616139 152616179 41 CAGGCACCCATCCTGACCCCCAGGCTGGAGAGGAGCCAAAA CAGGCACCCATCCTGACCCCCAGGATGGAGAGGAGCCAAAA < 41bp 0.501274655250385 0.83105591564797 0.6099913 0.87673587 prediction 0.659562520795171 Functional Gain - ZNF275 ENSG00000063587 UTR3 Human protein_coding chrX:152616159 chrX:152616163 . . 0 25 hm5C_associated_SNPs_100163 0 0 0 1 152616160 152616186 mRNA hsa-miR-372 ZNF275 miRanda miRanda
7949 chr1 161697151 161697151 1 + T G rs542774231 161697148 + 161697128 161697168 41 CCCGGTGTCCAGATCGGTCCCGTTGGTCACCTCCGTCCGGA CCCGGTGTCCAGATCGGTCCCGTGGGTCACCTCCGTCCGGA < 41bp 0.535066797916781 0.86415753914907 0.30078146 0.8942425 prediction 0.658181482464577 Functional Gain - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161697148 chr1:161697151 nonsynonymous SNV 0.034 1 24 hm5C_associated_SNPs_100202 0 0 0 1 161697147 161697166 mRNA hsa-miR-184 FCRLB miRanda miRanda
7950 chr1 52246899 52246899 1 + C A SARC 52246895 + 52246875 52246915 41 GGTTGTGAAATGGTACCTCTCAGCCTTTCATGCGGGAAGGA GGTTGTGAAATGGTACCTCTCAGCATTTCATGCGGGAAGGA < 41bp 0.54773444377782 0.876433945107285 0.7575951 0.33014715 prediction 0.657399002658929 Functional Gain - OSBPL9 ENSG00000117859 CDS Human protein_coding chr1:52246895 chr1:52246899 synonymous SNV . 0 25 hm5C_associated_SNPs_100224 0 0 1 1 52246885 52246905 mRNA hsa-miR-488 OSBPL9 miRanda miRanda
7951 chr1 54371890 54371890 1 + C A LUSC 54371886 + 54371866 54371906 41 TGCCCTGTGGTGGTGGACACCATGCAGAACCAGAGCAGCCA TGCCCTGTGGTGGTGGACACCATGAAGAACCAGAGCAGCCA < 41bp 0.465389855787719 0.828418905567817 0.18377063 0.20994696 prediction 0.656837811135634 Functional Gain - DIO1 ENSG00000211452 CDS Human protein_coding chr1:54371886 chr1:54371890 nonsynonymous SNV 0.952 0 25 hm5C_associated_SNPs_100244 0 0 0 2 54371886 54371909 mRNA hsa-miR-138 DIO1 miRanda miRanda
7952 chr1 54371890 54371890 1 + C A LUSC 54371886 + 54371866 54371906 41 TGCCCTGTGGTGGTGGACACCATGCAGAACCAGAGCAGCCA TGCCCTGTGGTGGTGGACACCATGAAGAACCAGAGCAGCCA < 41bp 0.465389855787719 0.828418905567817 0.18377063 0.20994696 prediction 0.656837811135634 Functional Gain - DIO1 ENSG00000211452 CDS Human protein_coding chr1:54371886 chr1:54371890 nonsynonymous SNV 0.952 0 25 hm5C_associated_SNPs_100244 0 0 0 2 54371871 54371895 mRNA hsa-miR-544 DIO1 miRanda miRanda
7953 chr3 169500324 169500324 1 + C A OV 169500320 + 169500300 169500340 41 GATTTGCTCAAGCCAGCACACTGACCTATCATGTCCGTAGG GATTTGCTCAAGCCAGCACACTGAACTATCATGTCCGTAGG < 41bp 0.451032179144745 0.828033951188144 0.055426776 0.09265208 prediction 0.656067902376289 Functional Gain - MYNN ENSG00000085274 CDS Human protein_coding chr3:169500320 chr3:169500324 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100265 0 0 0 2 169500304 169500325 mRNA hsa-miR-223 MYNN miRanda miRanda
7954 chr3 169500324 169500324 1 + C A OV 169500320 + 169500300 169500340 41 GATTTGCTCAAGCCAGCACACTGACCTATCATGTCCGTAGG GATTTGCTCAAGCCAGCACACTGAACTATCATGTCCGTAGG < 41bp 0.451032179144745 0.828033951188144 0.055426776 0.09265208 prediction 0.656067902376289 Functional Gain - MYNN ENSG00000085274 CDS Human protein_coding chr3:169500320 chr3:169500324 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100265 0 0 0 2 169500306 169500327 mRNA hsa-miR-196b MYNN miRanda miRanda
7955 chr9 1056920 1056920 1 + C A UCEC 1056916 + 1056896 1056936 41 TCTCCCATTGTTGACACGGACTCCCTGGCAGCTCAAGGGCA TCTCCCATTGTTGACACGGACTCCATGGCAGCTCAAGGGCA < 41bp 0.450749568842587 0.827726297166964 0.09003562 0.94314086 prediction 0.655452594333928 Functional Gain - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056916 chr9:1056920 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_100280 0 0 0 2 1056908 1056929 mRNA hsa-miR-22 DMRT2 miRanda miRanda
7956 chr9 1056920 1056920 1 + C A UCEC 1056916 + 1056896 1056936 41 TCTCCCATTGTTGACACGGACTCCCTGGCAGCTCAAGGGCA TCTCCCATTGTTGACACGGACTCCATGGCAGCTCAAGGGCA < 41bp 0.450749568842587 0.827726297166964 0.09003562 0.94314086 prediction 0.655452594333928 Functional Gain - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056916 chr9:1056920 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_100280 0 0 0 2 1056913 1056937 mRNA hsa-miR-874 DMRT2 miRanda miRanda
7957 chr13 107029338 107029338 1 + C A rs138340888 107029334 + 107029314 107029354 41 CCCTGGATGAACCACCATTGCCAGCGGGGAGCATGTTGCAG CCCTGGATGAACCACCATTGCCAGAGGGGAGCATGTTGCAG < 41bp 0.503682300035628 0.8312386088341 0.77357185 0.9065391 prediction 0.655112617596943 Functional Gain - LINC00460 ENSG00000233532 ncRNA_exonic Human lincRNA chr13:107029334 chr13:107029338 . . 0 25 hm5C_associated_SNPs_100287 0 0 0 2 107029338 107029359 lncRNA hsa-miR-320a LINC00460 miRanda starBase2
7958 chr13 107029338 107029338 1 + C A rs138340888 107029334 + 107029314 107029354 41 CCCTGGATGAACCACCATTGCCAGCGGGGAGCATGTTGCAG CCCTGGATGAACCACCATTGCCAGAGGGGAGCATGTTGCAG < 41bp 0.503682300035628 0.8312386088341 0.77357185 0.9065391 prediction 0.655112617596943 Functional Gain - LINC00460 ENSG00000233532 ncRNA_exonic Human lincRNA chr13:107029334 chr13:107029338 . . 0 25 hm5C_associated_SNPs_100287 0 0 0 2 107029338 107029359 lncRNA hsa-miR-320b LINC00460 miRanda starBase2
7959 chr6 17292081 17292081 1 + C A LUAD 17292077 + 17292057 17292097 41 ACAGCAGCTGCCGCCTCCACCACCCCTTACATTGATTACAC ACAGCAGCTGCCGCCTCCACCACCACTTACATTGATTACAC < 41bp 0.554414251718825 0.881243151050674 0.15300778 0.23197049 prediction 0.653657798663699 Functional Gain - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292077 chr6:17292081 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_100320 0 0 0 2 17292077 17292101 mRNA hsa-miR-199a-5p RBM24 miRanda miRanda
7960 chr6 17292081 17292081 1 + C A LUAD 17292077 + 17292057 17292097 41 ACAGCAGCTGCCGCCTCCACCACCCCTTACATTGATTACAC ACAGCAGCTGCCGCCTCCACCACCACTTACATTGATTACAC < 41bp 0.554414251718825 0.881243151050674 0.15300778 0.23197049 prediction 0.653657798663699 Functional Gain - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292077 chr6:17292081 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_100320 0 0 0 2 17292081 17292101 mRNA hsa-miR-199b-5p RBM24 miRanda miRanda
7961 chr7 72754785 72754785 1 + C A PAAD 72754781 + 72754761 72754801 41 TAGCCCTGTGCTATGGAGAGCAGGCTTTGATCATTGACCAA TAGCCCTGTGCTATGGAGAGCAGGATTTGATCATTGACCAA < 41bp 0.458551793656281 0.826608501898522 0.2127684 0.524731 prediction 0.653217003797044 Functional Gain - FKBP6 ENSG00000077800 CDS Human protein_coding chr7:72754781 chr7:72754785 nonsynonymous SNV 0.971 5 25 hm5C_associated_SNPs_100333 0 0 0 2 72754778 72754802 mRNA hsa-miR-182 FKBP6 miRanda miRanda
7962 chr7 72754785 72754785 1 + C A PAAD 72754781 + 72754761 72754801 41 TAGCCCTGTGCTATGGAGAGCAGGCTTTGATCATTGACCAA TAGCCCTGTGCTATGGAGAGCAGGATTTGATCATTGACCAA < 41bp 0.458551793656281 0.826608501898522 0.2127684 0.524731 prediction 0.653217003797044 Functional Gain - FKBP6 ENSG00000077800 CDS Human protein_coding chr7:72754781 chr7:72754785 nonsynonymous SNV 0.971 5 25 hm5C_associated_SNPs_100333 0 0 0 2 72754762 72754789 mRNA hsa-miR-20b FKBP6 miRanda miRanda
7963 chr11 31653919 31653919 1 + C A PRAD 31653915 + 31653895 31653935 41 TCTTCTGAGAACCTCTCTTTCAGCCTGCATCATCACAATGC TCTTCTGAGAACCTCTCTTTCAGCATGCATCATCACAATGC < 41bp 0.55878865824475 0.884753354115509 0.38009077 0.78650725 prediction 0.651929391741517 Functional Gain - ELP4 ENSG00000109911 CDS Human protein_coding chr11:31653915 chr11:31653919 synonymous SNV . 0 25 hm5C_associated_SNPs_100363 0 0 0 1 31653894 31653922 mRNA hsa-miR-125a-3p ELP4 miRanda miRanda
7964 chr10 95553033 95553033 1 + C A UCEC 95553029 + 95553009 95553049 41 ATGAGTATGTAGTCATCGCTCAGCCTTTTACTGGAAAATGC ATGAGTATGTAGTCATCGCTCAGCATTTTACTGGAAAATGC < 41bp 0.441433955759891 0.824990386054009 0.18677488 0.08554888 prediction 0.649980772108017 Functional Gain - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95553029 chr10:95553033 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_100411 0 0 0 1 95553022 95553044 mRNA hsa-miR-145 LGI1 miRanda miRanda
7965 chr9 131584613 131584613 1 - G T SARC 131584617 - 131584597 131584637 41 CTTTACGTAGGATTTCCCATCAGCCTCTGTCCTGTGGGCAG CTTTACGTAGGATTTCCCATCAGCATCTGTCCTGTGGGCAG < 41bp 0.447688522147259 0.824926559115493 0.28474784 0.4124529 prediction 0.649853118230987 Functional Gain - ENDOG ENSG00000167136 CDS Human protein_coding chr9:131584617 chr9:131584613 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_100414 0 0 1 1 131584610 131584628 mRNA hsa-miR-485-5p C9orf114 miRanda miRanda
7966 chr2 25042469 25042469 1 + C A rs78061613 25042465 + 25042445 25042485 41 CCTCCACAGTCCCGGAAAGCCCAGCGGCAAAGGCAGCTTTG CCTCCACAGTCCCGGAAAGCCCAGAGGCAAAGGCAGCTTTG < 41bp 0.480944761261893 0.824476650484916 0.6703849 0.7986218 prediction 0.648953300969833 Functional Gain - ADCY3;CENPO ENSG00000138031;ENSG00000138092 UTR3 Human other chr2:25042465 chr2:25042469 . . 0 25 hm5C_associated_SNPs_100435 0 0 1 1 25042463 25042483 mRNA hsa-miR-22 CENPO miRanda miRanda
7967 chr5 176732933 176732933 1 - G T HNSC 176732937 - 176732917 176732957 41 CTAGAGGAGACCCAGGCTTCCCGGCGGATTTCAGTCCAGCC CTAGAGGAGACCCAGGCTTCCCGGAGGATTTCAGTCCAGCC < 41bp 0.490666541690594 0.824375362708288 0.8832749 0.9004489 prediction 0.648750725416577 Functional Gain - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176732937 chr5:176732933 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_100441 0 0 0 2 176732918 176732937 mRNA hsa-miR-378 MXD3 miRanda miRanda
7968 chr5 176732933 176732933 1 - G T HNSC 176732937 - 176732917 176732957 41 CTAGAGGAGACCCAGGCTTCCCGGCGGATTTCAGTCCAGCC CTAGAGGAGACCCAGGCTTCCCGGAGGATTTCAGTCCAGCC < 41bp 0.490666541690594 0.824375362708288 0.8832749 0.9004489 prediction 0.648750725416577 Functional Gain - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176732937 chr5:176732933 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_100441 0 0 0 2 176732918 176732939 mRNA hsa-miR-422a MXD3 miRanda miRanda
7969 chr1 77510192 77510192 1 + C A LUAD 77510188 + 77510168 77510208 41 GGCAAGGGCCAGGTCTACAACAACCTGCATCTCCTGAGCCA GGCAAGGGCCAGGTCTACAACAACATGCATCTCCTGAGCCA < 41bp 0.566551847117928 0.889395897016152 0.45756984 0.503282 prediction 0.645688099796449 Functional Gain - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77510188 chr1:77510192 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100524 0 0 0 2 77510186 77510208 mRNA hsa-miR-24 ST6GALNAC5 miRanda miRanda
7970 chr1 77510192 77510192 1 + C A LUAD 77510188 + 77510168 77510208 41 GGCAAGGGCCAGGTCTACAACAACCTGCATCTCCTGAGCCA GGCAAGGGCCAGGTCTACAACAACATGCATCTCCTGAGCCA < 41bp 0.566551847117928 0.889395897016152 0.45756984 0.503282 prediction 0.645688099796449 Functional Gain - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77510188 chr1:77510192 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100524 0 0 0 2 77510188 77510210 mRNA hsa-miR-149 ST6GALNAC5 miRanda miRanda
7971 chr5 42800878 42800878 1 + T G UCEC 42800875 + 42800855 42800895 41 ATTCTTTCAGCGTCAACTGGCACTGGCTTCTGTGGGTATAA ATTCTTTCAGCGTCAACTGGCACGGGCTTCTGTGGGTATAA < 41bp 0.531324831878533 0.853195759456535 0.14174828 0.79645216 prediction 0.643741855156005 Functional Gain - SELENOP ENSG00000250722 CDS Human protein_coding chr5:42800875 chr5:42800878 unknown 0.240 1 24 hm5C_associated_SNPs_100578 0 0 0 2 42800877 42800899 mRNA hsa-miR-21 CCDC152 miRanda miRanda
7972 chr5 42800878 42800878 1 + T G UCEC 42800875 + 42800855 42800895 41 ATTCTTTCAGCGTCAACTGGCACTGGCTTCTGTGGGTATAA ATTCTTTCAGCGTCAACTGGCACGGGCTTCTGTGGGTATAA < 41bp 0.531324831878533 0.853195759456535 0.14174828 0.79645216 prediction 0.643741855156005 Functional Gain - SELENOP ENSG00000250722 CDS Human protein_coding chr5:42800875 chr5:42800878 unknown 0.240 1 24 hm5C_associated_SNPs_100578 0 0 0 2 42800876 42800899 mRNA hsa-miR-590-5p CCDC152 miRanda miRanda
7973 chr1 172635069 172635069 1 + T G PRAD 172635066 + 172635046 172635086 41 GGGGCAGTGTTCAATCTTACCAGTGCTGATCATTTATATGT GGGGCAGTGTTCAATCTTACCAGGGCTGATCATTTATATGT < 41bp 0.542826979715945 0.864671623995615 0.17855188 0.9044302 prediction 0.64368928855934 Functional Gain - FASLG ENSG00000117560 CDS Human protein_coding chr1:172635066 chr1:172635069 nonsynonymous SNV 0.972 0 24 hm5C_associated_SNPs_100580 0 0 0 1 172635052 172635077 mRNA hsa-miR-383 FASLG miRanda miRanda
7974 chr7 99751659 99751659 1 + C A rs185978679 99751655 + 99751635 99751675 41 CTGTGATGAGGCAGGCACACCTGTCGGTCTTGGCTTGCTGC CTGTGATGAGGCAGGCACACCTGTAGGTCTTGGCTTGCTGC < 41bp 0.472448679224302 0.82081893257042 0.17995936 0.3728723 prediction 0.64163786514084 Functional Gain - LAMTOR4 ENSG00000188186 UTR3 Human protein_coding chr7:99751655 chr7:99751659 . . 0 25 hm5C_associated_SNPs_100637 0 0 1 6 99751656 99751677 mRNA hsa-miR-15a C7orf59 miRanda miRanda
7975 chr7 99751659 99751659 1 + C A rs185978679 99751655 + 99751635 99751675 41 CTGTGATGAGGCAGGCACACCTGTCGGTCTTGGCTTGCTGC CTGTGATGAGGCAGGCACACCTGTAGGTCTTGGCTTGCTGC < 41bp 0.472448679224302 0.82081893257042 0.17995936 0.3728723 prediction 0.64163786514084 Functional Gain - LAMTOR4 ENSG00000188186 UTR3 Human protein_coding chr7:99751655 chr7:99751659 . . 0 25 hm5C_associated_SNPs_100637 0 0 1 6 99751656 99751677 mRNA hsa-miR-16 C7orf59 miRanda miRanda
7976 chr7 99751659 99751659 1 + C A rs185978679 99751655 + 99751635 99751675 41 CTGTGATGAGGCAGGCACACCTGTCGGTCTTGGCTTGCTGC CTGTGATGAGGCAGGCACACCTGTAGGTCTTGGCTTGCTGC < 41bp 0.472448679224302 0.82081893257042 0.17995936 0.3728723 prediction 0.64163786514084 Functional Gain - LAMTOR4 ENSG00000188186 UTR3 Human protein_coding chr7:99751655 chr7:99751659 . . 0 25 hm5C_associated_SNPs_100637 0 0 1 6 99751656 99751677 mRNA hsa-miR-15b C7orf59 miRanda miRanda
7977 chr7 99751659 99751659 1 + C A rs185978679 99751655 + 99751635 99751675 41 CTGTGATGAGGCAGGCACACCTGTCGGTCTTGGCTTGCTGC CTGTGATGAGGCAGGCACACCTGTAGGTCTTGGCTTGCTGC < 41bp 0.472448679224302 0.82081893257042 0.17995936 0.3728723 prediction 0.64163786514084 Functional Gain - LAMTOR4 ENSG00000188186 UTR3 Human protein_coding chr7:99751655 chr7:99751659 . . 0 25 hm5C_associated_SNPs_100637 0 0 1 6 99751657 99751677 mRNA hsa-miR-195 C7orf59 miRanda miRanda
7978 chr7 99751659 99751659 1 + C A rs185978679 99751655 + 99751635 99751675 41 CTGTGATGAGGCAGGCACACCTGTCGGTCTTGGCTTGCTGC CTGTGATGAGGCAGGCACACCTGTAGGTCTTGGCTTGCTGC < 41bp 0.472448679224302 0.82081893257042 0.17995936 0.3728723 prediction 0.64163786514084 Functional Gain - LAMTOR4 ENSG00000188186 UTR3 Human protein_coding chr7:99751655 chr7:99751659 . . 0 25 hm5C_associated_SNPs_100637 0 0 1 6 99751656 99751677 mRNA hsa-miR-424 C7orf59 miRanda miRanda
7979 chr7 99751659 99751659 1 + C A rs185978679 99751655 + 99751635 99751675 41 CTGTGATGAGGCAGGCACACCTGTCGGTCTTGGCTTGCTGC CTGTGATGAGGCAGGCACACCTGTAGGTCTTGGCTTGCTGC < 41bp 0.472448679224302 0.82081893257042 0.17995936 0.3728723 prediction 0.64163786514084 Functional Gain - LAMTOR4 ENSG00000188186 UTR3 Human protein_coding chr7:99751655 chr7:99751659 . . 0 25 hm5C_associated_SNPs_100637 0 0 1 6 99751657 99751677 mRNA hsa-miR-497 C7orf59 miRanda miRanda
7980 chr19 6751293 6751293 1 + T G rs1049232 6751290 + 6751270 6751310 41 GCCACGGGGAGCCCCAGGACCTATGCACTTTATTTCTGACC GCCACGGGGAGCCCCAGGACCTAGGCACTTTATTTCTGACC < 41bp 0.472423219673653 0.820770124628759 0.05189264 0.19183862 prediction 0.641540249257518 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751290 chr19:6751293 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_100641 1 0 1 8 6751280 6751301 mRNA hsa-miR-17 TRIP10 miRanda miRanda
7981 chr19 6751293 6751293 1 + T G rs1049232 6751290 + 6751270 6751310 41 GCCACGGGGAGCCCCAGGACCTATGCACTTTATTTCTGACC GCCACGGGGAGCCCCAGGACCTAGGCACTTTATTTCTGACC < 41bp 0.472423219673653 0.820770124628759 0.05189264 0.19183862 prediction 0.641540249257518 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751290 chr19:6751293 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_100641 1 0 1 8 6751280 6751301 mRNA hsa-miR-20a TRIP10 miRanda miRanda
7982 chr19 6751293 6751293 1 + T G rs1049232 6751290 + 6751270 6751310 41 GCCACGGGGAGCCCCAGGACCTATGCACTTTATTTCTGACC GCCACGGGGAGCCCCAGGACCTAGGCACTTTATTTCTGACC < 41bp 0.472423219673653 0.820770124628759 0.05189264 0.19183862 prediction 0.641540249257518 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751290 chr19:6751293 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_100641 1 0 1 8 6751280 6751301 mRNA hsa-miR-93 TRIP10 miRanda miRanda
7983 chr19 6751293 6751293 1 + T G rs1049232 6751290 + 6751270 6751310 41 GCCACGGGGAGCCCCAGGACCTATGCACTTTATTTCTGACC GCCACGGGGAGCCCCAGGACCTAGGCACTTTATTTCTGACC < 41bp 0.472423219673653 0.820770124628759 0.05189264 0.19183862 prediction 0.641540249257518 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751290 chr19:6751293 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_100641 1 0 1 8 6751280 6751301 mRNA hsa-miR-106a TRIP10 miRanda miRanda
7984 chr19 6751293 6751293 1 + T G rs1049232 6751290 + 6751270 6751310 41 GCCACGGGGAGCCCCAGGACCTATGCACTTTATTTCTGACC GCCACGGGGAGCCCCAGGACCTAGGCACTTTATTTCTGACC < 41bp 0.472423219673653 0.820770124628759 0.05189264 0.19183862 prediction 0.641540249257518 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751290 chr19:6751293 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_100641 1 0 1 8 6751275 6751297 mRNA hsa-miR-153 TRIP10 miRanda miRanda
7985 chr19 6751293 6751293 1 + T G rs1049232 6751290 + 6751270 6751310 41 GCCACGGGGAGCCCCAGGACCTATGCACTTTATTTCTGACC GCCACGGGGAGCCCCAGGACCTAGGCACTTTATTTCTGACC < 41bp 0.472423219673653 0.820770124628759 0.05189264 0.19183862 prediction 0.641540249257518 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751290 chr19:6751293 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_100641 1 0 1 8 6751282 6751301 mRNA hsa-miR-106b TRIP10 miRanda miRanda
7986 chr19 6751293 6751293 1 + T G rs1049232 6751290 + 6751270 6751310 41 GCCACGGGGAGCCCCAGGACCTATGCACTTTATTTCTGACC GCCACGGGGAGCCCCAGGACCTAGGCACTTTATTTCTGACC < 41bp 0.472423219673653 0.820770124628759 0.05189264 0.19183862 prediction 0.641540249257518 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751290 chr19:6751293 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_100641 1 0 1 8 6751280 6751301 mRNA hsa-miR-20b TRIP10 miRanda miRanda
7987 chr19 6751293 6751293 1 + T G rs1049232 6751290 + 6751270 6751310 41 GCCACGGGGAGCCCCAGGACCTATGCACTTTATTTCTGACC GCCACGGGGAGCCCCAGGACCTAGGCACTTTATTTCTGACC < 41bp 0.472423219673653 0.820770124628759 0.05189264 0.19183862 prediction 0.641540249257518 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751290 chr19:6751293 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_100641 1 0 1 8 6751280 6751301 mRNA hsa-miR-519d TRIP10 miRanda miRanda
7988 chr13 43363583 43363583 1 + C A rs182494370 43363579 + 43363559 43363599 41 ATTCATGCACACATCTTTCCCTGGCAGCTGAAGAAACACTC ATTCATGCACACATCTTTCCCTGGAAGCTGAAGAAACACTC < 41bp 0.516360427681077 0.836925641136292 0.029943258 0.08043733 prediction 0.641130426910429 Functional Gain - FAM216B ENSG00000179813 UTR3 Human protein_coding chr13:43363579 chr13:43363583 . . 0 25 hm5C_associated_SNPs_100657 0 0 0 1 43363567 43363588 mRNA hsa-miR-22 C13orf30 miRanda miRanda
7989 chr17 10608594 10608594 1 + T G KIRP 10608591 + 10608571 10608611 41 AACCATGAATTCTATAACTTCAGTAGAGAGTATTTAACACA AACCATGAATTCTATAACTTCAGGAGAGAGTATTTAACACA < 41bp 0.504207519324669 0.824769324126962 0.062200874 0.37928146 prediction 0.641123609604586 Functional Gain - ADPRM ENSG00000170222 CDS Human protein_coding chr17:10608591 chr17:10608594 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_100658 0 0 0 4 10608584 10608605 mRNA hsa-miR-200b C17orf48 miRanda miRanda
7990 chr17 10608594 10608594 1 + T G KIRP 10608591 + 10608571 10608611 41 AACCATGAATTCTATAACTTCAGTAGAGAGTATTTAACACA AACCATGAATTCTATAACTTCAGGAGAGAGTATTTAACACA < 41bp 0.504207519324669 0.824769324126962 0.062200874 0.37928146 prediction 0.641123609604586 Functional Gain - ADPRM ENSG00000170222 CDS Human protein_coding chr17:10608591 chr17:10608594 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_100658 0 0 0 4 10608594 10608616 mRNA hsa-miR-122 C17orf48 miRanda miRanda
7991 chr17 10608594 10608594 1 + T G KIRP 10608591 + 10608571 10608611 41 AACCATGAATTCTATAACTTCAGTAGAGAGTATTTAACACA AACCATGAATTCTATAACTTCAGGAGAGAGTATTTAACACA < 41bp 0.504207519324669 0.824769324126962 0.062200874 0.37928146 prediction 0.641123609604586 Functional Gain - ADPRM ENSG00000170222 CDS Human protein_coding chr17:10608591 chr17:10608594 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_100658 0 0 0 4 10608583 10608605 mRNA hsa-miR-200c C17orf48 miRanda miRanda
7992 chr17 10608594 10608594 1 + T G KIRP 10608591 + 10608571 10608611 41 AACCATGAATTCTATAACTTCAGTAGAGAGTATTTAACACA AACCATGAATTCTATAACTTCAGGAGAGAGTATTTAACACA < 41bp 0.504207519324669 0.824769324126962 0.062200874 0.37928146 prediction 0.641123609604586 Functional Gain - ADPRM ENSG00000170222 CDS Human protein_coding chr17:10608591 chr17:10608594 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_100658 0 0 0 4 10608584 10608605 mRNA hsa-miR-429 C17orf48 miRanda miRanda
7993 chr10 75529125 75529125 1 + C A PAAD 75529121 + 75529101 75529141 41 CTAGTGTGCCCTGCTTTACACCAGCTGTGCAGGGCAGCGTC CTAGTGTGCCCTGCTTTACACCAGATGTGCAGGGCAGCGTC < 41bp 0.440437229153271 0.820382602905346 0.18503407 0.32086787 prediction 0.640765205810691 Functional Gain - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529121 chr10:75529125 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_100673 0 0 1 2 75529107 75529126 mRNA hsa-miR-138 SEC24C miRanda miRanda
7994 chr10 75529125 75529125 1 + C A PAAD 75529121 + 75529101 75529141 41 CTAGTGTGCCCTGCTTTACACCAGCTGTGCAGGGCAGCGTC CTAGTGTGCCCTGCTTTACACCAGATGTGCAGGGCAGCGTC < 41bp 0.440437229153271 0.820382602905346 0.18503407 0.32086787 prediction 0.640765205810691 Functional Gain - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529121 chr10:75529125 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_100673 0 0 1 2 75529116 75529137 mRNA hsa-miR-874 SEC24C miRanda miRanda
7995 chr3 195452976 195452976 1 + C A COAD 195452972 + 195452952 195452992 41 ATGCCACGGTTGGGACCCCACTCCCCACTAACAGCGCCACA ATGCCACGGTTGGGACCCCACTCCACACTAACAGCGCCACA < 41bp 0.411981977682191 0.820070023727741 0.22413176 0.91993666 prediction 0.640140047455481 Functional Gain - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195452972 chr3:195452976 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_100694 0 0 0 1 195452959 195452980 mRNA hsa-miR-491-5p MUC20 miRanda miRanda
7996 chr21 26946433 26946433 1 + C A LIHC 26946429 + 26946409 26946449 41 GATGACAAAGAAGCATGAGTCACCCTGCTGGATAAACTTAG GATGACAAAGAAGCATGAGTCACCATGCTGGATAAACTTAG < 41bp 0.44937255960473 0.819234126313701 0.15203905 0.24301618 prediction 0.638468252627402 Functional Gain - MIR155HG ENSG00000234883 ncRNA_exonic Human lincRNA chr21:26946429 chr21:26946433 . . 0 25 hm5C_associated_SNPs_100740 0 0 0 1 26946418 26946439 mRNA hsa-miR-214 MIR155HG miRanda miRanda
7997 chr16 1605163 1605163 1 + C A rs9922661 1605159 + 1605139 1605179 41 AGTCTGGGTGACCTCTGCGCCATGCGTGCGAGACACGTGTG AGTCTGGGTGACCTCTGCGCCATGAGTGCGAGACACGTGTG < 41bp 0.467633526942656 0.818016885004807 0.21885756 0.16262949 prediction 0.636033770009613 Functional Gain - TMEM204 ENSG00000131634 UTR3 Human protein_coding chr16:1605159 chr16:1605163 . . 0 25 hm5C_associated_SNPs_100815 0 0 0 2 1605145 1605168 mRNA hsa-miR-103 TMEM204 miRanda miRanda
7998 chr16 1605163 1605163 1 + C A rs9922661 1605159 + 1605139 1605179 41 AGTCTGGGTGACCTCTGCGCCATGCGTGCGAGACACGTGTG AGTCTGGGTGACCTCTGCGCCATGAGTGCGAGACACGTGTG < 41bp 0.467633526942656 0.818016885004807 0.21885756 0.16262949 prediction 0.636033770009613 Functional Gain - TMEM204 ENSG00000131634 UTR3 Human protein_coding chr16:1605159 chr16:1605163 . . 0 25 hm5C_associated_SNPs_100815 0 0 0 2 1605145 1605168 mRNA hsa-miR-107 TMEM204 miRanda miRanda
7999 chr1 111442176 111442176 1 + C A rs113959563 111442172 + 111442152 111442192 41 CCCATTGTCGAATTAGTCTCCAGCCTCTAAATAATGCCCAG CCCATTGTCGAATTAGTCTCCAGCATCTAAATAATGCCCAG < 41bp 0.52093431726883 0.838784620162859 0.09551832 0.04319504 prediction 0.635700605788059 Functional Gain - CD53 ENSG00000143119 UTR3 Human protein_coding chr1:111442172 chr1:111442176 . . 0 25 hm5C_associated_SNPs_100824 0 0 1 1 111442161 111442179 mRNA hsa-miR-485-5p CD53 miRanda miRanda
8000 chr15 79044487 79044487 1 + C A rs139813293 79044483 + 79044463 79044503 41 TGTGTTAAAAGGAGCCCACGCAGCCGACAGCAGCAGGAGCA TGTGTTAAAAGGAGCCCACGCAGCAGACAGCAGCAGGAGCA < 41bp 0.487817856083799 0.8176698914359 0.49108425 0.7120275 prediction 0.6353397828718 Functional Gain - LOC646938 ENSG00000238166 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:79044483 chr15:79044487 . . 0 25 hm5C_associated_SNPs_100836 0 0 0 1 79044479 79044500 mRNA hsa-miR-370 LOC646938 miRanda miRanda
8001 chr13 70681819 70681819 1 + C A LUSC 70681815 + 70681795 70681835 41 GCTTCACATCGAAGTCTTTTCGCCCAGAGCCTGACATGCTT GCTTCACATCGAAGTCTTTTCGCCAAGAGCCTGACATGCTT < 41bp 0.560377115482283 0.877704168247663 0.03031531 0.45913255 prediction 0.634654105530761 Functional Gain - KLHL1 ENSG00000150361 CDS Human protein_coding chr13:70681815 chr13:70681819 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_100859 0 0 0 2 70681816 70681839 mRNA hsa-miR-30c ATXN8OS miRanda miRanda
8002 chr13 70681819 70681819 1 + C A LUSC 70681815 + 70681795 70681835 41 GCTTCACATCGAAGTCTTTTCGCCCAGAGCCTGACATGCTT GCTTCACATCGAAGTCTTTTCGCCAAGAGCCTGACATGCTT < 41bp 0.560377115482283 0.877704168247663 0.03031531 0.45913255 prediction 0.634654105530761 Functional Gain - KLHL1 ENSG00000150361 CDS Human protein_coding chr13:70681815 chr13:70681819 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_100859 0 0 0 2 70681817 70681839 mRNA hsa-miR-30b ATXN8OS miRanda miRanda
8003 chrX 47088476 47088476 1 + C A rs113461071 47088472 + 47088452 47088492 41 CACACTGAGGCCAGGTCTACCCCCCATCATACCAGCCCCCA CACACTGAGGCCAGGTCTACCCCCAATCATACCAGCCCCCA < 41bp 0.429517030258756 0.817189882685392 0.05674967 0.05168268 prediction 0.634379765370783 Functional Gain - CDK16 ENSG00000102225 UTR3 Human protein_coding chrX:47088472 chrX:47088476 . . 0 25 hm5C_associated_SNPs_100871 0 0 1 1 47088461 47088482 mRNA hsa-miR-299-3p CDK16 miRanda miRanda
8004 chr4 71232742 71232742 1 + C A rs3775732 71232738 + 71232718 71232758 41 ACAACTGCAACAGGTGCCACCACCCACAAAAGACAACACTA ACAACTGCAACAGGTGCCACCACCAACAAAAGACAACACTA < 41bp 0.46773927680669 0.817032305021472 0.04465598 0.23172516 prediction 0.634064610042945 Functional Gain - SMR3A ENSG00000109208 UTR3 Human protein_coding chr4:71232738 chr4:71232742 . . 0 25 hm5C_associated_SNPs_100881 0 0 0 1 71232740 71232760 mRNA hsa-miR-142-3p SMR3A miRanda miRanda
8005 chr7 156469246 156469246 1 + C A COAD 156469242 + 156469222 156469262 41 CCTGCTCACATGTGTTCCACCATGCGTGTCTGCTGGCACTA CCTGCTCACATGTGTTCCACCATGAGTGTCTGCTGGCACTA < 41bp 0.476248910349764 0.816979912268523 0.19841444 0.1494169 prediction 0.633959824537047 Functional Gain - RNF32 ENSG00000105982 CDS Human protein_coding chr7:156469242 chr7:156469246 nonsynonymous SNV 0.012 0 25 hm5C_associated_SNPs_100883 0 0 0 4 156469235 156469256 mRNA hsa-miR-15a RNF32 miRanda miRanda
8006 chr7 156469246 156469246 1 + C A COAD 156469242 + 156469222 156469262 41 CCTGCTCACATGTGTTCCACCATGCGTGTCTGCTGGCACTA CCTGCTCACATGTGTTCCACCATGAGTGTCTGCTGGCACTA < 41bp 0.476248910349764 0.816979912268523 0.19841444 0.1494169 prediction 0.633959824537047 Functional Gain - RNF32 ENSG00000105982 CDS Human protein_coding chr7:156469242 chr7:156469246 nonsynonymous SNV 0.012 0 25 hm5C_associated_SNPs_100883 0 0 0 4 156469236 156469256 mRNA hsa-miR-16 RNF32 miRanda miRanda
8007 chr7 156469246 156469246 1 + C A COAD 156469242 + 156469222 156469262 41 CCTGCTCACATGTGTTCCACCATGCGTGTCTGCTGGCACTA CCTGCTCACATGTGTTCCACCATGAGTGTCTGCTGGCACTA < 41bp 0.476248910349764 0.816979912268523 0.19841444 0.1494169 prediction 0.633959824537047 Functional Gain - RNF32 ENSG00000105982 CDS Human protein_coding chr7:156469242 chr7:156469246 nonsynonymous SNV 0.012 0 25 hm5C_associated_SNPs_100883 0 0 0 4 156469235 156469256 mRNA hsa-miR-15b RNF32 miRanda miRanda
8008 chr7 156469246 156469246 1 + C A COAD 156469242 + 156469222 156469262 41 CCTGCTCACATGTGTTCCACCATGCGTGTCTGCTGGCACTA CCTGCTCACATGTGTTCCACCATGAGTGTCTGCTGGCACTA < 41bp 0.476248910349764 0.816979912268523 0.19841444 0.1494169 prediction 0.633959824537047 Functional Gain - RNF32 ENSG00000105982 CDS Human protein_coding chr7:156469242 chr7:156469246 nonsynonymous SNV 0.012 0 25 hm5C_associated_SNPs_100883 0 0 0 4 156469236 156469256 mRNA hsa-miR-497 RNF32 miRanda miRanda
8009 chr8 110573135 110573135 1 + C A COAD 110573131 + 110573111 110573151 41 ATGGGAAGAAGAAGAAGATGCAGCCTGGCAAGCAGAAGAAG ATGGGAAGAAGAAGAAGATGCAGCATGGCAAGCAGAAGAAG < 41bp 0.426704857068926 0.816881051756982 0.116149396 0.113756806 prediction 0.633762103513964 Functional Gain - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573131 chr8:110573135 synonymous SNV . 0 25 hm5C_associated_SNPs_100889 0 0 0 2 110573135 110573157 mRNA hsa-miR-146a EBAG9 miRanda miRanda
8010 chr8 110573135 110573135 1 + C A COAD 110573131 + 110573111 110573151 41 ATGGGAAGAAGAAGAAGATGCAGCCTGGCAAGCAGAAGAAG ATGGGAAGAAGAAGAAGATGCAGCATGGCAAGCAGAAGAAG < 41bp 0.426704857068926 0.816881051756982 0.116149396 0.113756806 prediction 0.633762103513964 Functional Gain - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573131 chr8:110573135 synonymous SNV . 0 25 hm5C_associated_SNPs_100889 0 0 0 2 110573127 110573148 mRNA hsa-miR-544 EBAG9 miRanda miRanda
8011 chr7 65154321 65154321 1 + T G UCEC 65154318 + 65154298 65154338 41 GCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAA GCTCTTCATGAACTCTTATGCTGGACTAATGTTTCAACCAA < 41bp 0.488105581282481 0.816809801207346 0.21320808 0.20279327 prediction 0.633619602414691 Functional Gain - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65154318 chr7:65154321 . . 0 24 hm5C_associated_SNPs_100894 0 0 0 3 65154318 65154341 mRNA hsa-miR-9 INTS4L2 miRanda miRanda
8012 chr7 65154321 65154321 1 + T G UCEC 65154318 + 65154298 65154338 41 GCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAA GCTCTTCATGAACTCTTATGCTGGACTAATGTTTCAACCAA < 41bp 0.488105581282481 0.816809801207346 0.21320808 0.20279327 prediction 0.633619602414691 Functional Gain - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65154318 chr7:65154321 . . 0 24 hm5C_associated_SNPs_100894 0 0 0 3 65154310 65154333 mRNA hsa-miR-494 INTS4L2 miRanda miRanda
8013 chr7 65154321 65154321 1 + T G UCEC 65154318 + 65154298 65154338 41 GCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAA GCTCTTCATGAACTCTTATGCTGGACTAATGTTTCAACCAA < 41bp 0.488105581282481 0.816809801207346 0.21320808 0.20279327 prediction 0.633619602414691 Functional Gain - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65154318 chr7:65154321 . . 0 24 hm5C_associated_SNPs_100894 0 0 0 3 65154317 65154337 mRNA hsa-miR-653 INTS4L2 miRanda miRanda
8014 chr1 160319417 160319417 1 + C A STAD 160319413 + 160319393 160319433 41 GTCCTTGACCAAGCCCAGTCCTGCCTCAGGCTTCTCTCCTA GTCCTTGACCAAGCCCAGTCCTGCATCAGGCTTCTCTCCTA < 41bp 0.587687682568292 0.904087357162712 0.037400246 0.19847965 prediction 0.63279934918884 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160319413 chr1:160319417 synonymous SNV . 0 25 hm5C_associated_SNPs_100916 0 0 1 1 160319406 160319432 mRNA hsa-miR-185 NCSTN miRanda miRanda
8015 chr19 1535363 1535363 1 + C A rs56073142 1535359 + 1535339 1535379 41 CCTGGGGGAGGGCTGGGGGGCACACGGGAGGTGGGTTCTTG CCTGGGGGAGGGCTGGGGGGCACAAGGGAGGTGGGTTCTTG < 41bp 0.49637852221906 0.815853988801994 0.87288404 0.89883757 prediction 0.631707977603987 Functional Gain - PLK5 ENSG00000185988 UTR3 Human protein_coding chr19:1535359 chr19:1535363 . . 0 25 hm5C_associated_SNPs_100951 0 0 0 1 1535362 1535382 mRNA hsa-miR-31 PLK5P miRanda miRanda
8016 chr22 42289163 42289163 1 + C A KIRP 42289159 + 42289139 42289179 41 GCCCAGAGCCTGTGTGGCCCCGAGCACAGTGCTGTTCCTGA GCCCAGAGCCTGTGTGGCCCCGAGAACAGTGCTGTTCCTGA < 41bp 0.560522910725076 0.876268021190049 0.16087115 0.31902295 prediction 0.631490220929946 Functional Gain - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42289159 chr22:42289163 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_100956 0 0 1 1 42289159 42289179 mRNA hsa-miR-873 SREBF2 miRanda miRanda
8017 chr4 70160277 70160277 1 + T G rs6843900 70160274 + 70160254 70160294 41 AGAGAATGTTATGAAATTATCAATAATTCAACATGATCAAC AGAGAATGTTATGAAATTATCAAGAATTCAACATGATCAAC < 41bp 0.475596677383598 0.815137796683615 0.053199828 0.16101745 prediction 0.63027559336723 Functional Gain - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70160274 chr4:70160277 nonsynonymous SNV 0.110 0 24 hm5C_associated_SNPs_100994 0 0 0 3 70160271 70160292 mRNA hsa-miR-190 UGT2B28 miRanda miRanda
8018 chr4 70160277 70160277 1 + T G rs6843900 70160274 + 70160254 70160294 41 AGAGAATGTTATGAAATTATCAATAATTCAACATGATCAAC AGAGAATGTTATGAAATTATCAAGAATTCAACATGATCAAC < 41bp 0.475596677383598 0.815137796683615 0.053199828 0.16101745 prediction 0.63027559336723 Functional Gain - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70160274 chr4:70160277 nonsynonymous SNV 0.110 0 24 hm5C_associated_SNPs_100994 0 0 0 3 70160267 70160287 mRNA hsa-miR-653 UGT2B28 miRanda miRanda
8019 chr4 70160277 70160277 1 + T G rs6843900 70160274 + 70160254 70160294 41 AGAGAATGTTATGAAATTATCAATAATTCAACATGATCAAC AGAGAATGTTATGAAATTATCAAGAATTCAACATGATCAAC < 41bp 0.475596677383598 0.815137796683615 0.053199828 0.16101745 prediction 0.63027559336723 Functional Gain - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70160274 chr4:70160277 nonsynonymous SNV 0.110 0 24 hm5C_associated_SNPs_100994 0 0 0 3 70160270 70160292 mRNA hsa-miR-190b UGT2B28 miRanda miRanda
8020 chr17 39847294 39847294 1 + C A rs3209306 39847290 + 39847270 39847310 41 TCCCTCATTTAAACAGAGGTCAAGCAATAGGCGCCTGGCAG TCCCTCATTTAAACAGAGGTCAAGAAATAGGCGCCTGGCAG < 41bp 0.486347533587838 0.814382314307348 0.07864851 0.23893183 prediction 0.628764628614696 Functional Gain - EIF1 ENSG00000173812 UTR3 Human protein_coding chr17:39847290 chr17:39847294 . . 0 25 hm5C_associated_SNPs_101029 0 0 1 1 39847277 39847299 mRNA hsa-miR-137 EIF1 miRanda miRanda
8021 chr17 18344639 18344639 1 + T G OV 18344636 + 18344616 18344656 41 TGGCCTACCTGAGGAAGAACCACTAGGAGGTGTGGTTGCTG TGGCCTACCTGAGGAAGAACCACGAGGAGGTGTGGTTGCTG < 41bp 0.523430388072037 0.837600918454415 0.5189401 0.8362901 prediction 0.628341060764756 Functional Gain - KRT16P1 ENSG00000214856 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:18344636 chr17:18344639 . . 0 24 hm5C_associated_SNPs_101040 0 0 0 1 18344620 18344640 mRNA hsa-miR-140-5p KRT14P miRanda miRanda
8022 chr22 35691106 35691106 1 + C A rs16995562 35691102 + 35691082 35691122 41 ATGAGATTCTCTGCCAACACCAAGCTCTGAGTTAACTGTGC ATGAGATTCTCTGCCAACACCAAGATCTGAGTTAACTGTGC < 41bp 0.527368197560335 0.840600597305241 0.23687392 0.40669695 prediction 0.626464799489812 Functional Gain - HMGXB4 ENSG00000100281 UTR3 Human protein_coding chr22:35691102 chr22:35691106 . . 0 25 hm5C_associated_SNPs_101086 0 0 1 1 35691080 35691107 mRNA hsa-miR-138 HMGXB4 miRanda miRanda
8023 chr6 17292055 17292055 1 + C A LUAD 17292051 + 17292031 17292071 41 GAGTGGTCATTCCACACGTCCAGCCGACAGCAGCTGCCGCC GAGTGGTCATTCCACACGTCCAGCAGACAGCAGCTGCCGCC < 41bp 0.570859723115666 0.882759847536896 0.24801731 0.36703247 prediction 0.62380024884246 Functional Gain - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292051 chr6:17292055 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_101175 0 0 0 4 17292046 17292069 mRNA hsa-miR-34a RBM24 miRanda miRanda
8024 chr6 17292055 17292055 1 + C A LUAD 17292051 + 17292031 17292071 41 GAGTGGTCATTCCACACGTCCAGCCGACAGCAGCTGCCGCC GAGTGGTCATTCCACACGTCCAGCAGACAGCAGCTGCCGCC < 41bp 0.570859723115666 0.882759847536896 0.24801731 0.36703247 prediction 0.62380024884246 Functional Gain - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292051 chr6:17292055 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_101175 0 0 0 4 17292046 17292069 mRNA hsa-miR-34c-5p RBM24 miRanda miRanda
8025 chr6 17292055 17292055 1 + C A LUAD 17292051 + 17292031 17292071 41 GAGTGGTCATTCCACACGTCCAGCCGACAGCAGCTGCCGCC GAGTGGTCATTCCACACGTCCAGCAGACAGCAGCTGCCGCC < 41bp 0.570859723115666 0.882759847536896 0.24801731 0.36703247 prediction 0.62380024884246 Functional Gain - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292051 chr6:17292055 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_101175 0 0 0 4 17292049 17292069 mRNA hsa-miR-449a RBM24 miRanda miRanda
8026 chr6 17292055 17292055 1 + C A LUAD 17292051 + 17292031 17292071 41 GAGTGGTCATTCCACACGTCCAGCCGACAGCAGCTGCCGCC GAGTGGTCATTCCACACGTCCAGCAGACAGCAGCTGCCGCC < 41bp 0.570859723115666 0.882759847536896 0.24801731 0.36703247 prediction 0.62380024884246 Functional Gain - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292051 chr6:17292055 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_101175 0 0 0 4 17292049 17292069 mRNA hsa-miR-449b RBM24 miRanda miRanda
8027 chr15 74335396 74335396 1 + C A ESCA 74335392 + 74335372 74335412 41 CTCCAGCTGGAAGGCCCCAGCACCCTCAGGGTCCTGGACGA CTCCAGCTGGAAGGCCCCAGCACCATCAGGGTCCTGGACGA < 41bp 0.454116683950977 0.811892796188542 0.07339218 0.06747183 prediction 0.623785592377084 Functional Gain - PML ENSG00000140464 CDS Human protein_coding chr15:74335392 chr15:74335396 nonsynonymous SNV 0.129 2 25 hm5C_associated_SNPs_101177 0 0 0 1 74335383 74335405 mRNA hsa-miR-504 PML miRanda miRanda
8028 chr1 161697361 161697361 1 + C A rs35358752 161697357 + 161697337 161697377 41 TCCTGGAATTAAAGGAGCCACAGGCCCTCCGGGAGCTCAGG TCCTGGAATTAAAGGAGCCACAGGACCTCCGGGAGCTCAGG < 41bp 0.561430429138761 0.872684802236216 0.43672544 0.61252177 prediction 0.62250874619491 Functional Gain - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161697357 chr1:161697361 nonsynonymous SNV 0.506 1 25 hm5C_associated_SNPs_101212 0 0 0 2 161697354 161697379 mRNA hsa-miR-125b FCRLB miRanda miRanda
8029 chr1 161697361 161697361 1 + C A rs35358752 161697357 + 161697337 161697377 41 TCCTGGAATTAAAGGAGCCACAGGCCCTCCGGGAGCTCAGG TCCTGGAATTAAAGGAGCCACAGGACCTCCGGGAGCTCAGG < 41bp 0.561430429138761 0.872684802236216 0.43672544 0.61252177 prediction 0.62250874619491 Functional Gain - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161697357 chr1:161697361 nonsynonymous SNV 0.506 1 25 hm5C_associated_SNPs_101212 0 0 0 2 161697354 161697379 mRNA hsa-miR-125a-5p FCRLB miRanda miRanda
8030 chr3 9952559 9952559 1 + C A rs115354176 9952555 + 9952535 9952575 41 TGCCACCTGCCCAGATGGCTCGGACTTCTGGAAGTCAGTGC TGCCACCTGCCCAGATGGCTCGGAATTCTGGAAGTCAGTGC < 41bp 0.448477528338544 0.810907640373076 0.28948057 0.38230947 prediction 0.621815280746152 Functional Gain - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9952555 chr3:9952559 nonsynonymous SNV 0.988 1 25 hm5C_associated_SNPs_101241 0 0 1 1 9952557 9952578 mRNA hsa-miR-134 IL17RE miRanda miRanda
8031 chr17 30687944 30687944 1 + T G SKCM 30687941 + 30687921 30687961 41 ATTAATGCCAGGTGTTCCTCCTCTGATGCCAGGAATGCCAC ATTAATGCCAGGTGTTCCTCCTCGGATGCCAGGAATGCCAC < 41bp 0.556533882670439 0.867250517207044 0.0927622 0.23171723 prediction 0.621433269073209 Functional Gain - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30687941 chr17:30687944 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_101249 0 0 1 1 30687932 30687951 mRNA hsa-miR-24 ZNF207 miRanda miRanda
8032 chr9 32551209 32551209 1 + T G rs183953517 32551206 + 32551186 32551226 41 TCTTGTTACTGGTACTCAGCCACTGGGGACACTGACTGAAT TCTTGTTACTGGTACTCAGCCACGGGGGACACTGACTGAAT < 41bp 0.452611186540611 0.80948163980219 0.2585461 0.38650176 prediction 0.61896327960438 Functional Gain - SMIM27 ENSG00000235453 ncRNA_exonic Human protein_coding chr9:32551206 chr9:32551209 . . 0 24 hm5C_associated_SNPs_101334 0 0 0 4 32551206 32551229 mRNA hsa-miR-181a LOC100129250 miRanda miRanda
8033 chr9 32551209 32551209 1 + T G rs183953517 32551206 + 32551186 32551226 41 TCTTGTTACTGGTACTCAGCCACTGGGGACACTGACTGAAT TCTTGTTACTGGTACTCAGCCACGGGGGACACTGACTGAAT < 41bp 0.452611186540611 0.80948163980219 0.2585461 0.38650176 prediction 0.61896327960438 Functional Gain - SMIM27 ENSG00000235453 ncRNA_exonic Human protein_coding chr9:32551206 chr9:32551209 . . 0 24 hm5C_associated_SNPs_101334 0 0 0 4 32551203 32551229 mRNA hsa-miR-181b LOC100129250 miRanda miRanda
8034 chr9 32551209 32551209 1 + T G rs183953517 32551206 + 32551186 32551226 41 TCTTGTTACTGGTACTCAGCCACTGGGGACACTGACTGAAT TCTTGTTACTGGTACTCAGCCACGGGGGACACTGACTGAAT < 41bp 0.452611186540611 0.80948163980219 0.2585461 0.38650176 prediction 0.61896327960438 Functional Gain - SMIM27 ENSG00000235453 ncRNA_exonic Human protein_coding chr9:32551206 chr9:32551209 . . 0 24 hm5C_associated_SNPs_101334 0 0 0 4 32551203 32551229 mRNA hsa-miR-181d LOC100129250 miRanda miRanda
8035 chr9 32551209 32551209 1 + T G rs183953517 32551206 + 32551186 32551226 41 TCTTGTTACTGGTACTCAGCCACTGGGGACACTGACTGAAT TCTTGTTACTGGTACTCAGCCACGGGGGACACTGACTGAAT < 41bp 0.452611186540611 0.80948163980219 0.2585461 0.38650176 prediction 0.61896327960438 Functional Gain - SMIM27 ENSG00000235453 ncRNA_exonic Human protein_coding chr9:32551206 chr9:32551209 . . 0 24 hm5C_associated_SNPs_101334 0 0 0 4 32551207 32551230 mRNA hsa-miR-543 LOC100129250 miRanda miRanda
8036 chr1 166962004 166962004 1 + C A ACC 166962000 + 166961980 166962020 41 CTCATTGTGAACAGCGCTTCCTCCCTTGTGAAATTGGCTGT CTCATTGTGAACAGCGCTTCCTCCATTGTGAAATTGGCTGT < 41bp 0.393283373093099 0.809357058734982 0.059742987 0.95384717 prediction 0.618714117469964 Functional Gain - MAEL ENSG00000143194 CDS Human protein_coding chr1:166962000 chr1:166962004 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101342 0 0 0 1 166961998 166962023 mRNA hsa-miR-362-3p MAEL miRanda miRanda
8037 chr7 157209551 157209551 1 + C A rs1059752 157209547 + 157209527 157209567 41 AAAACGGGCCGGTATTTACACACGCGCAAAACACCCAGAGA AAAACGGGCCGGTATTTACACACGAGCAAAACACCCAGAGA < 41bp 0.445192352270142 0.809294786913347 0.30844915 0.19711846 prediction 0.618589573826693 Functional Gain - DNAJB6 ENSG00000105993 UTR3 Human protein_coding chr7:157209547 chr7:157209551 . . 0 25 hm5C_associated_SNPs_101347 0 0 1 2 157209548 157209567 mRNA hsa-miR-330-5p DNAJB6 miRanda miRanda
8038 chr7 157209551 157209551 1 + C A rs1059752 157209547 + 157209527 157209567 41 AAAACGGGCCGGTATTTACACACGCGCAAAACACCCAGAGA AAAACGGGCCGGTATTTACACACGAGCAAAACACCCAGAGA < 41bp 0.445192352270142 0.809294786913347 0.30844915 0.19711846 prediction 0.618589573826693 Functional Gain - DNAJB6 ENSG00000105993 UTR3 Human protein_coding chr7:157209547 chr7:157209551 . . 0 25 hm5C_associated_SNPs_101347 0 0 1 2 157209548 157209567 mRNA hsa-miR-326 DNAJB6 miRanda miRanda
8039 chr8 87165877 87165877 1 + T G rs78164817 87165874 + 87165854 87165894 41 TTGGGATTACATGCATGAGCCACTGTGCTGGGCTTCATTTA TTGGGATTACATGCATGAGCCACGGTGCTGGGCTTCATTTA < 41bp 0.492165897932971 0.8092512614811 0.091786474 0.24161708 prediction 0.6185025229622 Functional Gain - ATP6V0D2 ENSG00000253675 ncRNA_intronic Human antisense chr8:87165874 chr8:87165877 . . 0 24 hm5C_associated_SNPs_101351 0 0 0 1 87165861 87165881 mRNA hsa-miR-128 ATP6V0D2 miRanda miRanda
8040 chr15 45567873 45567873 1 + C A rs183740563 45567869 + 45567849 45567889 41 TTGGGCCGGGCTCAGTGGCTCATGCCTGTAATCCCAGCACT TTGGGCCGGGCTCAGTGGCTCATGACTGTAATCCCAGCACT < 41bp 0.486833513627867 0.808857894753831 0.05205795 0.19683942 prediction 0.617715789507663 Functional Gain - LOC101928414 ENSG00000259520 ncRNA_intronic Human antisense chr15:45567869 chr15:45567873 . . 0 25 hm5C_associated_SNPs_101375 0 0 0 7 45567870 45567892 mRNA hsa-miR-17 SLC28A2 miRanda miRanda
8041 chr15 45567873 45567873 1 + C A rs183740563 45567869 + 45567849 45567889 41 TTGGGCCGGGCTCAGTGGCTCATGCCTGTAATCCCAGCACT TTGGGCCGGGCTCAGTGGCTCATGACTGTAATCCCAGCACT < 41bp 0.486833513627867 0.808857894753831 0.05205795 0.19683942 prediction 0.617715789507663 Functional Gain - LOC101928414 ENSG00000259520 ncRNA_intronic Human antisense chr15:45567869 chr15:45567873 . . 0 25 hm5C_associated_SNPs_101375 0 0 0 7 45567870 45567892 mRNA hsa-miR-20a SLC28A2 miRanda miRanda
8042 chr15 45567873 45567873 1 + C A rs183740563 45567869 + 45567849 45567889 41 TTGGGCCGGGCTCAGTGGCTCATGCCTGTAATCCCAGCACT TTGGGCCGGGCTCAGTGGCTCATGACTGTAATCCCAGCACT < 41bp 0.486833513627867 0.808857894753831 0.05205795 0.19683942 prediction 0.617715789507663 Functional Gain - LOC101928414 ENSG00000259520 ncRNA_intronic Human antisense chr15:45567869 chr15:45567873 . . 0 25 hm5C_associated_SNPs_101375 0 0 0 7 45567870 45567892 mRNA hsa-miR-93 SLC28A2 miRanda miRanda
8043 chr15 45567873 45567873 1 + C A rs183740563 45567869 + 45567849 45567889 41 TTGGGCCGGGCTCAGTGGCTCATGCCTGTAATCCCAGCACT TTGGGCCGGGCTCAGTGGCTCATGACTGTAATCCCAGCACT < 41bp 0.486833513627867 0.808857894753831 0.05205795 0.19683942 prediction 0.617715789507663 Functional Gain - LOC101928414 ENSG00000259520 ncRNA_intronic Human antisense chr15:45567869 chr15:45567873 . . 0 25 hm5C_associated_SNPs_101375 0 0 0 7 45567870 45567892 mRNA hsa-miR-106a SLC28A2 miRanda miRanda
8044 chr15 45567873 45567873 1 + C A rs183740563 45567869 + 45567849 45567889 41 TTGGGCCGGGCTCAGTGGCTCATGCCTGTAATCCCAGCACT TTGGGCCGGGCTCAGTGGCTCATGACTGTAATCCCAGCACT < 41bp 0.486833513627867 0.808857894753831 0.05205795 0.19683942 prediction 0.617715789507663 Functional Gain - LOC101928414 ENSG00000259520 ncRNA_intronic Human antisense chr15:45567869 chr15:45567873 . . 0 25 hm5C_associated_SNPs_101375 0 0 0 7 45567872 45567892 mRNA hsa-miR-106b SLC28A2 miRanda miRanda
8045 chr15 45567873 45567873 1 + C A rs183740563 45567869 + 45567849 45567889 41 TTGGGCCGGGCTCAGTGGCTCATGCCTGTAATCCCAGCACT TTGGGCCGGGCTCAGTGGCTCATGACTGTAATCCCAGCACT < 41bp 0.486833513627867 0.808857894753831 0.05205795 0.19683942 prediction 0.617715789507663 Functional Gain - LOC101928414 ENSG00000259520 ncRNA_intronic Human antisense chr15:45567869 chr15:45567873 . . 0 25 hm5C_associated_SNPs_101375 0 0 0 7 45567870 45567892 mRNA hsa-miR-20b SLC28A2 miRanda miRanda
8046 chr15 45567873 45567873 1 + C A rs183740563 45567869 + 45567849 45567889 41 TTGGGCCGGGCTCAGTGGCTCATGCCTGTAATCCCAGCACT TTGGGCCGGGCTCAGTGGCTCATGACTGTAATCCCAGCACT < 41bp 0.486833513627867 0.808857894753831 0.05205795 0.19683942 prediction 0.617715789507663 Functional Gain - LOC101928414 ENSG00000259520 ncRNA_intronic Human antisense chr15:45567869 chr15:45567873 . . 0 25 hm5C_associated_SNPs_101375 0 0 0 7 45567872 45567892 mRNA hsa-miR-519d SLC28A2 miRanda miRanda
8047 chr6 26468289 26468289 1 + C A COAD 26468285 + 26468265 26468305 41 CTAGGGGAGAGCGTGCCTGACAACCCAGAGAGATTCGACAG CTAGGGGAGAGCGTGCCTGACAACACAGAGAGATTCGACAG < 41bp 0.5806528437374 0.888862804130204 0.28119248 0.12964648 prediction 0.616419920785609 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26468285 chr6:26468289 nonsynonymous SNV 0.944 3 25 hm5C_associated_SNPs_101408 0 0 0 3 26468275 26468295 mRNA hsa-miR-330-5p BTN2A1 miRanda miRanda
8048 chr6 26468289 26468289 1 + C A COAD 26468285 + 26468265 26468305 41 CTAGGGGAGAGCGTGCCTGACAACCCAGAGAGATTCGACAG CTAGGGGAGAGCGTGCCTGACAACACAGAGAGATTCGACAG < 41bp 0.5806528437374 0.888862804130204 0.28119248 0.12964648 prediction 0.616419920785609 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26468285 chr6:26468289 nonsynonymous SNV 0.944 3 25 hm5C_associated_SNPs_101408 0 0 0 3 26468276 26468295 mRNA hsa-miR-326 BTN2A1 miRanda miRanda
8049 chr6 26468289 26468289 1 + C A COAD 26468285 + 26468265 26468305 41 CTAGGGGAGAGCGTGCCTGACAACCCAGAGAGATTCGACAG CTAGGGGAGAGCGTGCCTGACAACACAGAGAGATTCGACAG < 41bp 0.5806528437374 0.888862804130204 0.28119248 0.12964648 prediction 0.616419920785609 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26468285 chr6:26468289 nonsynonymous SNV 0.944 3 25 hm5C_associated_SNPs_101408 0 0 0 3 26468280 26468300 mRNA hsa-miR-216b BTN2A1 miRanda miRanda
8050 chr8 8090332 8090332 1 + T G rs527964025 8090329 + 8090309 8090349 41 GCCGTAGACTGTGAGGCATCCTGTGTGTGTGAAGCACCCGC GCCGTAGACTGTGAGGCATCCTGGGTGTGTGAAGCACCCGC < 41bp 0.444386999951058 0.808101867741367 0.07697618 0.760841 prediction 0.616203735482734 Functional Gain - FAM86B3P ENSG00000173295 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr8:8090329 chr8:8090332 . . 0 24 hm5C_associated_SNPs_101417 0 0 0 1 8090318 8090341 mRNA hsa-miR-377 FLJ10661 miRanda miRanda
8051 chr22 18898421 18898421 1 + T G rs185483691 18898418 + 18898398 18898438 41 CAGGCGGTGGAGCACCGGATCCGTGAGGAGCAGCGGGCGAT CAGGCGGTGGAGCACCGGATCCGGGAGGAGCAGCGGGCGAT < 41bp 0.431348600626844 0.808048841818827 0.4720018 0.90495646 prediction 0.616097683637655 Functional Gain - DGCR6 ENSG00000183628 CDS Human protein_coding chr22:18898418 chr22:18898421 synonymous SNV . 0 24 hm5C_associated_SNPs_101424 0 0 0 1 18898403 18898421 mRNA hsa-miR-127-3p DGCR6 miRanda miRanda
8052 chr14 94467567 94467567 1 + C A rs59039338 94467563 + 94467543 94467583 41 GCACTACGGGAAGCTCTTCACAGCCAGCCAGGACACGCAGA GCACTACGGGAAGCTCTTCACAGCAAGCCAGGACACGCAGA < 41bp 0.550636756718166 0.858520406470654 0.070250124 0.28888538 prediction 0.615767299504976 Functional Gain - C14orf48 ENSG00000175699 ncRNA_exonic Human protein_coding chr14:94467563 chr14:94467567 . . 0 25 hm5C_associated_SNPs_101432 0 0 0 1 94467551 94467575 mRNA hsa-miR-370 C14orf48 miRanda miRanda
8053 chr5 104435424 104435424 1 + C A LUSC 104435420 + 104435400 104435440 41 TTTTACAGAGGTTCTGACTGCTGCCTGCTTACTTTTAGTGT TTTTACAGAGGTTCTGACTGCTGCATGCTTACTTTTAGTGT < 41bp 0.476550690474637 0.807762890185777 0.049892932 0.056699455 prediction 0.615525780371553 Functional Gain - RAB9BP1 ENSG00000232159 ncRNA_exonic Human processed_pseudogene chr5:104435420 chr5:104435424 . . 0 25 hm5C_associated_SNPs_101437 0 0 0 2 104435424 104435445 mRNA hsa-miR-505 RAB9BP1 miRanda miRanda
8054 chr5 104435424 104435424 1 + C A LUSC 104435420 + 104435400 104435440 41 TTTTACAGAGGTTCTGACTGCTGCCTGCTTACTTTTAGTGT TTTTACAGAGGTTCTGACTGCTGCATGCTTACTTTTAGTGT < 41bp 0.476550690474637 0.807762890185777 0.049892932 0.056699455 prediction 0.615525780371553 Functional Gain - RAB9BP1 ENSG00000232159 ncRNA_exonic Human processed_pseudogene chr5:104435420 chr5:104435424 . . 0 25 hm5C_associated_SNPs_101437 0 0 0 2 104435420 104435444 mRNA hsa-miR-421 RAB9BP1 miRanda miRanda
8055 chr16 30533555 30533555 1 + T G rs369306839 30533553 + 30533533 30533573 41 TCCCCAGCCTCTTCTAGAGCCGTGATGCCTCCCTGTTGAAG TCCCCAGCCTCTTCTAGAGCCGGGATGCCTCCCTGTTGAAG < 41bp 0.508878267967902 0.814194609584079 0.19395599 0.9263611 prediction 0.610632683232354 Functional Gain - ITGAL ENSG00000005844 UTR3 Human protein_coding chr16:30533553 chr16:30533555 . . 0 23 hm5C_associated_SNPs_101590 0 0 0 1 30533549 30533572 mRNA hsa-miR-421 ITGAL miRanda miRanda
8056 chr3 52812454 52812454 1 + C A OV 52812450 + 52812430 52812470 41 CACCAGCCAAGTGGTCAACACTGCCAATGAAGCCAGGGAAG CACCAGCCAAGTGGTCAACACTGCAAATGAAGCCAGGGAAG < 41bp 0.39183403323428 0.804568430311576 0.2804443 0.4951767 prediction 0.609136860623153 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52812450 chr3:52812454 synonymous SNV . 0 25 hm5C_associated_SNPs_101645 0 0 0 4 52812428 52812455 mRNA hsa-miR-34a ITIH1 miRanda miRanda
8057 chr3 52812454 52812454 1 + C A OV 52812450 + 52812430 52812470 41 CACCAGCCAAGTGGTCAACACTGCCAATGAAGCCAGGGAAG CACCAGCCAAGTGGTCAACACTGCAAATGAAGCCAGGGAAG < 41bp 0.39183403323428 0.804568430311576 0.2804443 0.4951767 prediction 0.609136860623153 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52812450 chr3:52812454 synonymous SNV . 0 25 hm5C_associated_SNPs_101645 0 0 0 4 52812433 52812455 mRNA hsa-miR-34c-5p ITIH1 miRanda miRanda
8058 chr3 52812454 52812454 1 + C A OV 52812450 + 52812430 52812470 41 CACCAGCCAAGTGGTCAACACTGCCAATGAAGCCAGGGAAG CACCAGCCAAGTGGTCAACACTGCAAATGAAGCCAGGGAAG < 41bp 0.39183403323428 0.804568430311576 0.2804443 0.4951767 prediction 0.609136860623153 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52812450 chr3:52812454 synonymous SNV . 0 25 hm5C_associated_SNPs_101645 0 0 0 4 52812431 52812455 mRNA hsa-miR-449a ITIH1 miRanda miRanda
8059 chr3 52812454 52812454 1 + C A OV 52812450 + 52812430 52812470 41 CACCAGCCAAGTGGTCAACACTGCCAATGAAGCCAGGGAAG CACCAGCCAAGTGGTCAACACTGCAAATGAAGCCAGGGAAG < 41bp 0.39183403323428 0.804568430311576 0.2804443 0.4951767 prediction 0.609136860623153 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52812450 chr3:52812454 synonymous SNV . 0 25 hm5C_associated_SNPs_101645 0 0 0 4 52812431 52812455 mRNA hsa-miR-449b ITIH1 miRanda miRanda
8060 chr11 6292922 6292922 1 + C A rs199821533 6292918 + 6292898 6292938 41 CACAGGAAAAGGTAGCTTACCTGACACAAGAGGAATAAGAA CACAGGAAAAGGTAGCTTACCTGAAACAAGAGGAATAAGAA < 41bp 0.456514908182135 0.804350175379459 0.15497452 0.34337217 prediction 0.608700350758918 Functional Gain - CCKBR ENSG00000110148 UTR3 Human protein_coding chr11:6292918 chr11:6292922 . . 0 25 hm5C_associated_SNPs_101657 0 0 1 2 6292922 6292944 mRNA hsa-miR-136 CCKBR miRanda miRanda
8061 chr11 6292922 6292922 1 + C A rs199821533 6292918 + 6292898 6292938 41 CACAGGAAAAGGTAGCTTACCTGACACAAGAGGAATAAGAA CACAGGAAAAGGTAGCTTACCTGAAACAAGAGGAATAAGAA < 41bp 0.456514908182135 0.804350175379459 0.15497452 0.34337217 prediction 0.608700350758918 Functional Gain - CCKBR ENSG00000110148 UTR3 Human protein_coding chr11:6292918 chr11:6292922 . . 0 25 hm5C_associated_SNPs_101657 0 0 1 2 6292908 6292927 mRNA hsa-miR-599 CCKBR miRanda miRanda
8062 chr9 37080159 37080159 1 + C A UCEC 37080155 + 37080135 37080175 41 TCGGCGTCTCCGGTCCGCCCCTCACTTGTGGTGGGGCGCAG TCGGCGTCTCCGGTCCGCCCCTCAATTGTGGTGGGGCGCAG < 41bp 0.463503162921616 0.80324200781386 0.22943455 0.9108317 prediction 0.606484015627719 Functional Gain - EBLN3P ENSG00000233137 ncRNA_exonic Human other chr9:37080155 chr9:37080159 . . 0 25 hm5C_associated_SNPs_101730 0 0 1 1 37080159 37080181 lncRNA hsa-miR-3139 EBLN3P miRanda starBase2
8063 chr4 25351214 25351214 1 + C A ACC 25351210 + 25351190 25351230 41 TTGGTGGCTTGGTTGAACCTCTGGCTATTACATTCAAGAAG TTGGTGGCTTGGTTGAACCTCTGGATATTACATTCAAGAAG < 41bp 0.592065791912311 0.895257029058077 0.08162862 0.14935464 prediction 0.606382474291533 Functional Gain - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25351210 chr4:25351214 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101736 0 0 1 3 25351204 25351226 mRNA hsa-miR-1 ZCCHC4 miRanda miRanda
8064 chr4 25351214 25351214 1 + C A ACC 25351210 + 25351190 25351230 41 TTGGTGGCTTGGTTGAACCTCTGGCTATTACATTCAAGAAG TTGGTGGCTTGGTTGAACCTCTGGATATTACATTCAAGAAG < 41bp 0.592065791912311 0.895257029058077 0.08162862 0.14935464 prediction 0.606382474291533 Functional Gain - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25351210 chr4:25351214 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101736 0 0 1 3 25351205 25351226 mRNA hsa-miR-206 ZCCHC4 miRanda miRanda
8065 chr4 25351214 25351214 1 + C A ACC 25351210 + 25351190 25351230 41 TTGGTGGCTTGGTTGAACCTCTGGCTATTACATTCAAGAAG TTGGTGGCTTGGTTGAACCTCTGGATATTACATTCAAGAAG < 41bp 0.592065791912311 0.895257029058077 0.08162862 0.14935464 prediction 0.606382474291533 Functional Gain - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25351210 chr4:25351214 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101736 0 0 1 3 25351207 25351226 mRNA hsa-miR-613 ZCCHC4 miRanda miRanda
8066 chr9 133573588 133573588 1 + C A rs201749338 133573584 + 133573564 133573604 41 TGGAAGGTGGAGACCAACTCCAGGCTGGATTCGGTCTTGCT TGGAAGGTGGAGACCAACTCCAGGATGGATTCGGTCTTGCT < 41bp 0.593293874642969 0.895700148820595 0.9080777 0.85940933 prediction 0.604812548355252 Functional Gain - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133573584 chr9:133573588 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_101785 0 0 1 5 133573588 133573608 mRNA hsa-miR-15a EXOSC2 miRanda miRanda
8067 chr9 133573588 133573588 1 + C A rs201749338 133573584 + 133573564 133573604 41 TGGAAGGTGGAGACCAACTCCAGGCTGGATTCGGTCTTGCT TGGAAGGTGGAGACCAACTCCAGGATGGATTCGGTCTTGCT < 41bp 0.593293874642969 0.895700148820595 0.9080777 0.85940933 prediction 0.604812548355252 Functional Gain - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133573584 chr9:133573588 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_101785 0 0 1 5 133573587 133573608 mRNA hsa-miR-16 EXOSC2 miRanda miRanda
8068 chr9 133573588 133573588 1 + C A rs201749338 133573584 + 133573564 133573604 41 TGGAAGGTGGAGACCAACTCCAGGCTGGATTCGGTCTTGCT TGGAAGGTGGAGACCAACTCCAGGATGGATTCGGTCTTGCT < 41bp 0.593293874642969 0.895700148820595 0.9080777 0.85940933 prediction 0.604812548355252 Functional Gain - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133573584 chr9:133573588 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_101785 0 0 1 5 133573587 133573608 mRNA hsa-miR-15b EXOSC2 miRanda miRanda
8069 chr9 133573588 133573588 1 + C A rs201749338 133573584 + 133573564 133573604 41 TGGAAGGTGGAGACCAACTCCAGGCTGGATTCGGTCTTGCT TGGAAGGTGGAGACCAACTCCAGGATGGATTCGGTCTTGCT < 41bp 0.593293874642969 0.895700148820595 0.9080777 0.85940933 prediction 0.604812548355252 Functional Gain - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133573584 chr9:133573588 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_101785 0 0 1 5 133573587 133573608 mRNA hsa-miR-424 EXOSC2 miRanda miRanda
8070 chr9 133573588 133573588 1 + C A rs201749338 133573584 + 133573564 133573604 41 TGGAAGGTGGAGACCAACTCCAGGCTGGATTCGGTCTTGCT TGGAAGGTGGAGACCAACTCCAGGATGGATTCGGTCTTGCT < 41bp 0.593293874642969 0.895700148820595 0.9080777 0.85940933 prediction 0.604812548355252 Functional Gain - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133573584 chr9:133573588 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_101785 0 0 1 5 133573587 133573608 mRNA hsa-miR-497 EXOSC2 miRanda miRanda
8071 chr8 11291633 11291633 1 + C A rs192500917 11291629 + 11291609 11291649 41 TGTGAAGAAAGAAACGCAAACACCCCTAGGAACCAGGTTGG TGTGAAGAAAGAAACGCAAACACCACTAGGAACCAGGTTGG < 41bp 0.439201664058425 0.802102557544174 0.068632245 0.13749409 prediction 0.604205115088349 Functional Gain - FAM167A-AS1 ENSG00000184608 UTR5 Human antisense chr8:11291629 chr8:11291633 . . 0 25 hm5C_associated_SNPs_101813 0 0 0 1 11291623 11291641 mRNA hsa-miR-384 C8orf12 miRanda miRanda
8072 chr18 21736278 21736278 1 + T A rs150107485 21736274 + 21736254 21736294 41 CTTGCAGGATGAACAAGAACCTCCTGCTTATGATCAAGCTC CTTGCAGGATGAACAAGAACCTCCAGCTTATGATCAAGCTC < 41bp 0.533220060272079 0.834747901756657 0.11458704 0.73107177 prediction 0.603055682969157 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21736274 chr18:21736278 synonymous SNV . 0 25 hm5C_associated_SNPs_101848 0 0 0 3 21736276 21736297 mRNA hsa-miR-28-5p CABYR miRanda miRanda
8073 chr18 21736278 21736278 1 + T A rs150107485 21736274 + 21736254 21736294 41 CTTGCAGGATGAACAAGAACCTCCTGCTTATGATCAAGCTC CTTGCAGGATGAACAAGAACCTCCAGCTTATGATCAAGCTC < 41bp 0.533220060272079 0.834747901756657 0.11458704 0.73107177 prediction 0.603055682969157 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21736274 chr18:21736278 synonymous SNV . 0 25 hm5C_associated_SNPs_101848 0 0 0 3 21736273 21736294 mRNA hsa-miR-590-5p CABYR miRanda miRanda
8074 chr18 21736278 21736278 1 + T A rs150107485 21736274 + 21736254 21736294 41 CTTGCAGGATGAACAAGAACCTCCTGCTTATGATCAAGCTC CTTGCAGGATGAACAAGAACCTCCAGCTTATGATCAAGCTC < 41bp 0.533220060272079 0.834747901756657 0.11458704 0.73107177 prediction 0.603055682969157 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21736274 chr18:21736278 synonymous SNV . 0 25 hm5C_associated_SNPs_101848 0 0 0 3 21736275 21736297 mRNA hsa-miR-708 CABYR miRanda miRanda
8075 chr20 30617636 30617636 1 + T A SKCM 30617632 + 30617612 30617652 41 ACGGAGACCGGCGCAAGTTCCTCCTCCTTGGTGAGCCCCCG ACGGAGACCGGCGCAAGTTCCTCCACCTTGGTGAGCCCCCG < 41bp 0.536259846227218 0.83685957672274 0.44246763 0.95026237 prediction 0.601199460991044 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30617632 chr20:30617636 nonsynonymous SNV 0.847 4 25 hm5C_associated_SNPs_101907 0 0 0 1 30617626 30617641 mRNA hsa-miR-324-5p C20orf160 miRanda miRanda
8076 chr13 113338008 113338008 1 + C A rs9603932 113338004 + 113337984 113338024 41 GAGACCACGGCTTATCCAGTCTCGCTCCTGACCTGCATCTG GAGACCACGGCTTATCCAGTCTCGATCCTGACCTGCATCTG < 41bp 0.444490146778671 0.800295681292242 0.046436757 0.16080734 prediction 0.600591362584484 Functional Gain - ATP11AUN ENSG00000197595 UTR3 Human lincRNA chr13:113338004 chr13:113338008 . . 0 25 hm5C_associated_SNPs_101930 0 0 0 1 113338004 113338025 mRNA hsa-miR-152 C13orf35 miRanda miRanda
8077 chr19 49464818 49464818 1 + C A OV 49464814 + 49464794 49464834 41 CCTCCTCTCCTACTTTGGGACGCCCACGTGGCAGACCGTGA CCTCCTCTCCTACTTTGGGACGCCAACGTGGCAGACCGTGA < 41bp 0.404806200122063 0.800081032016726 0.08776918 0.46302783 prediction 0.600162064033452 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49464814 chr19:49464818 synonymous SNV . 0 25 hm5C_associated_SNPs_101945 0 0 1 1 49464807 49464830 mRNA hsa-miR-346 BAX miRanda miRanda
8078 chr8 144102376 144102376 1 + T G LGG 144102373 + 144102353 144102393 41 CAGAATGAAGATCTTCTTGCCAGTGCTGCTGGCTGCCCTTC CAGAATGAAGATCTTCTTGCCAGGGCTGCTGGCTGCCCTTC < 41bp 0.58889067629657 0.888771147128228 0.16596463 0.9360623 prediction 0.599760941663316 Functional Gain - LY6E ENSG00000160932 CDS Human protein_coding chr8:144102373 chr8:144102376 nonsynonymous SNV 0.352 2 24 hm5C_associated_SNPs_101955 0 0 1 6 144102362 144102383 mRNA hsa-miR-15a LY6E miRanda miRanda
8079 chr8 144102376 144102376 1 + T G LGG 144102373 + 144102353 144102393 41 CAGAATGAAGATCTTCTTGCCAGTGCTGCTGGCTGCCCTTC CAGAATGAAGATCTTCTTGCCAGGGCTGCTGGCTGCCCTTC < 41bp 0.58889067629657 0.888771147128228 0.16596463 0.9360623 prediction 0.599760941663316 Functional Gain - LY6E ENSG00000160932 CDS Human protein_coding chr8:144102373 chr8:144102376 nonsynonymous SNV 0.352 2 24 hm5C_associated_SNPs_101955 0 0 1 6 144102360 144102383 mRNA hsa-miR-16 LY6E miRanda miRanda
8080 chr8 144102376 144102376 1 + T G LGG 144102373 + 144102353 144102393 41 CAGAATGAAGATCTTCTTGCCAGTGCTGCTGGCTGCCCTTC CAGAATGAAGATCTTCTTGCCAGGGCTGCTGGCTGCCCTTC < 41bp 0.58889067629657 0.888771147128228 0.16596463 0.9360623 prediction 0.599760941663316 Functional Gain - LY6E ENSG00000160932 CDS Human protein_coding chr8:144102373 chr8:144102376 nonsynonymous SNV 0.352 2 24 hm5C_associated_SNPs_101955 0 0 1 6 144102362 144102383 mRNA hsa-miR-15b LY6E miRanda miRanda
8081 chr8 144102376 144102376 1 + T G LGG 144102373 + 144102353 144102393 41 CAGAATGAAGATCTTCTTGCCAGTGCTGCTGGCTGCCCTTC CAGAATGAAGATCTTCTTGCCAGGGCTGCTGGCTGCCCTTC < 41bp 0.58889067629657 0.888771147128228 0.16596463 0.9360623 prediction 0.599760941663316 Functional Gain - LY6E ENSG00000160932 CDS Human protein_coding chr8:144102373 chr8:144102376 nonsynonymous SNV 0.352 2 24 hm5C_associated_SNPs_101955 0 0 1 6 144102357 144102383 mRNA hsa-miR-195 LY6E miRanda miRanda
8082 chr8 144102376 144102376 1 + T G LGG 144102373 + 144102353 144102393 41 CAGAATGAAGATCTTCTTGCCAGTGCTGCTGGCTGCCCTTC CAGAATGAAGATCTTCTTGCCAGGGCTGCTGGCTGCCCTTC < 41bp 0.58889067629657 0.888771147128228 0.16596463 0.9360623 prediction 0.599760941663316 Functional Gain - LY6E ENSG00000160932 CDS Human protein_coding chr8:144102373 chr8:144102376 nonsynonymous SNV 0.352 2 24 hm5C_associated_SNPs_101955 0 0 1 6 144102362 144102383 mRNA hsa-miR-424 LY6E miRanda miRanda
8083 chr8 144102376 144102376 1 + T G LGG 144102373 + 144102353 144102393 41 CAGAATGAAGATCTTCTTGCCAGTGCTGCTGGCTGCCCTTC CAGAATGAAGATCTTCTTGCCAGGGCTGCTGGCTGCCCTTC < 41bp 0.58889067629657 0.888771147128228 0.16596463 0.9360623 prediction 0.599760941663316 Functional Gain - LY6E ENSG00000160932 CDS Human protein_coding chr8:144102373 chr8:144102376 nonsynonymous SNV 0.352 2 24 hm5C_associated_SNPs_101955 0 0 1 6 144102363 144102383 mRNA hsa-miR-497 LY6E miRanda miRanda
8084 chr12 53457704 53457704 1 + C A rs34922637 53457700 + 53457680 53457720 41 GCTCAGAGCCCACATCAACACTGCCCCCCTCCCAGCACCCC GCTCAGAGCCCACATCAACACTGCACCCCTCCCAGCACCCC < 41bp 0.41151739704527 0.799317564178667 0.034744233 0.024613112 prediction 0.598635128357334 Functional Gain - TNS2 ENSG00000111077 UTR3 Human protein_coding chr12:53457700 chr12:53457704 . . 0 25 hm5C_associated_SNPs_101995 0 0 0 4 53457685 53457705 mRNA hsa-miR-34a TENC1 miRanda miRanda
8085 chr12 53457704 53457704 1 + C A rs34922637 53457700 + 53457680 53457720 41 GCTCAGAGCCCACATCAACACTGCCCCCCTCCCAGCACCCC GCTCAGAGCCCACATCAACACTGCACCCCTCCCAGCACCCC < 41bp 0.41151739704527 0.799317564178667 0.034744233 0.024613112 prediction 0.598635128357334 Functional Gain - TNS2 ENSG00000111077 UTR3 Human protein_coding chr12:53457700 chr12:53457704 . . 0 25 hm5C_associated_SNPs_101995 0 0 0 4 53457683 53457705 mRNA hsa-miR-34c-5p TENC1 miRanda miRanda
8086 chr12 53457704 53457704 1 + C A rs34922637 53457700 + 53457680 53457720 41 GCTCAGAGCCCACATCAACACTGCCCCCCTCCCAGCACCCC GCTCAGAGCCCACATCAACACTGCACCCCTCCCAGCACCCC < 41bp 0.41151739704527 0.799317564178667 0.034744233 0.024613112 prediction 0.598635128357334 Functional Gain - TNS2 ENSG00000111077 UTR3 Human protein_coding chr12:53457700 chr12:53457704 . . 0 25 hm5C_associated_SNPs_101995 0 0 0 4 53457683 53457705 mRNA hsa-miR-449a TENC1 miRanda miRanda
8087 chr12 53457704 53457704 1 + C A rs34922637 53457700 + 53457680 53457720 41 GCTCAGAGCCCACATCAACACTGCCCCCCTCCCAGCACCCC GCTCAGAGCCCACATCAACACTGCACCCCTCCCAGCACCCC < 41bp 0.41151739704527 0.799317564178667 0.034744233 0.024613112 prediction 0.598635128357334 Functional Gain - TNS2 ENSG00000111077 UTR3 Human protein_coding chr12:53457700 chr12:53457704 . . 0 25 hm5C_associated_SNPs_101995 0 0 0 4 53457683 53457705 mRNA hsa-miR-449b TENC1 miRanda miRanda
8088 chr2 37459358 37459358 1 + T A STAD 37459354 + 37459334 37459374 41 TATGTACAAAATAAAGTCTACTGGTCCCATCACTGTGGCCG TATGTACAAAATAAAGTCTACTGGACCCATCACTGTGGCCG < 41bp 0.490362171974817 0.798926519926053 0.07233226 0.13053805 prediction 0.597853039852105 Functional Gain - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37459354 chr2:37459358 synonymous SNV . 0 25 hm5C_associated_SNPs_102025 0 0 1 1 37459347 37459371 mRNA hsa-miR-128 C2orf56 miRanda miRanda
8089 chr19 49842111 49842111 1 + T A UCEC 49842107 + 49842087 49842127 41 TAGATAAGGTGATCTTGCCCCAGCTCAGCAGGCTTGGACAC TAGATAAGGTGATCTTGCCCCAGCACAGCAGGCTTGGACAC < 41bp 0.516655037959315 0.815349311721661 0.18979362 0.23981276 prediction 0.597388547524692 Functional Gain - CD37 ENSG00000104894 CDS Human protein_coding chr19:49842107 chr19:49842111 nonsynonymous SNV 0.046 1 25 hm5C_associated_SNPs_102032 0 0 1 1 49842098 49842119 mRNA hsa-miR-370 CD37 miRanda miRanda
8090 chr14 74531621 74531621 1 + C A KIRC 74531617 + 74531597 74531637 41 CACTGGAATGGGGACATTCACTCCCACCTAAAACAGAACAA CACTGGAATGGGGACATTCACTCCAACCTAAAACAGAACAA < 41bp 0.604648418889771 0.903224574766144 0.2847025 0.91241944 prediction 0.597152311752747 Functional Gain - ALDH6A1 ENSG00000119711 CDS Human protein_coding chr14:74531617 chr14:74531621 synonymous SNV . 0 25 hm5C_associated_SNPs_102038 0 0 0 1 74531617 74531638 mRNA hsa-miR-375 C14orf45 miRanda miRanda
8091 chr6 26413521 26413521 1 + T G UCEC 26413519 + 26413499 26413539 41 ACCCTGAGAGATTTAATTGGCATTATTGTGTTCTCGGCTGT ACCCTGAGAGATTTAATTGGCAGTATTGTGTTCTCGGCTGT < 41bp 0.499694952378578 0.798143138728285 0.26661295 0.32660103 prediction 0.596286277456571 Functional Gain - BTN3A1 ENSG00000026950 CDS Human protein_coding chr6:26413519 chr6:26413521 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_102066 0 0 1 1 26413520 26413543 mRNA hsa-miR-342-3p BTN3A1 miRanda miRanda
8092 chr7 44842037 44842037 1 + C A rs539726282 44842033 + 44842013 44842053 41 GCTGAGATTACAGATGTGAGCCACCGCACCCTACCTCATTT GCTGAGATTACAGATGTGAGCCACAGCACCCTACCTCATTT < 41bp 0.452196736315074 0.798072997653765 0.03353402 0.03185138 prediction 0.59614599530753 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842033 chr7:44842037 . . 0 25 hm5C_associated_SNPs_102069 0 0 1 9 44842029 44842050 mRNA hsa-let-7a PPIA miRanda miRanda
8093 chr7 44842037 44842037 1 + C A rs539726282 44842033 + 44842013 44842053 41 GCTGAGATTACAGATGTGAGCCACCGCACCCTACCTCATTT GCTGAGATTACAGATGTGAGCCACAGCACCCTACCTCATTT < 41bp 0.452196736315074 0.798072997653765 0.03353402 0.03185138 prediction 0.59614599530753 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842033 chr7:44842037 . . 0 25 hm5C_associated_SNPs_102069 0 0 1 9 44842031 44842050 mRNA hsa-let-7b PPIA miRanda miRanda
8094 chr7 44842037 44842037 1 + C A rs539726282 44842033 + 44842013 44842053 41 GCTGAGATTACAGATGTGAGCCACCGCACCCTACCTCATTT GCTGAGATTACAGATGTGAGCCACAGCACCCTACCTCATTT < 41bp 0.452196736315074 0.798072997653765 0.03353402 0.03185138 prediction 0.59614599530753 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842033 chr7:44842037 . . 0 25 hm5C_associated_SNPs_102069 0 0 1 9 44842031 44842050 mRNA hsa-let-7c PPIA miRanda miRanda
8095 chr7 44842037 44842037 1 + C A rs539726282 44842033 + 44842013 44842053 41 GCTGAGATTACAGATGTGAGCCACCGCACCCTACCTCATTT GCTGAGATTACAGATGTGAGCCACAGCACCCTACCTCATTT < 41bp 0.452196736315074 0.798072997653765 0.03353402 0.03185138 prediction 0.59614599530753 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842033 chr7:44842037 . . 0 25 hm5C_associated_SNPs_102069 0 0 1 9 44842026 44842050 mRNA hsa-let-7d PPIA miRanda miRanda
8096 chr7 44842037 44842037 1 + C A rs539726282 44842033 + 44842013 44842053 41 GCTGAGATTACAGATGTGAGCCACCGCACCCTACCTCATTT GCTGAGATTACAGATGTGAGCCACAGCACCCTACCTCATTT < 41bp 0.452196736315074 0.798072997653765 0.03353402 0.03185138 prediction 0.59614599530753 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842033 chr7:44842037 . . 0 25 hm5C_associated_SNPs_102069 0 0 1 9 44842029 44842050 mRNA hsa-let-7e PPIA miRanda miRanda
8097 chr7 44842037 44842037 1 + C A rs539726282 44842033 + 44842013 44842053 41 GCTGAGATTACAGATGTGAGCCACCGCACCCTACCTCATTT GCTGAGATTACAGATGTGAGCCACAGCACCCTACCTCATTT < 41bp 0.452196736315074 0.798072997653765 0.03353402 0.03185138 prediction 0.59614599530753 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842033 chr7:44842037 . . 0 25 hm5C_associated_SNPs_102069 0 0 1 9 44842029 44842050 mRNA hsa-let-7f PPIA miRanda miRanda
8098 chr7 44842037 44842037 1 + C A rs539726282 44842033 + 44842013 44842053 41 GCTGAGATTACAGATGTGAGCCACCGCACCCTACCTCATTT GCTGAGATTACAGATGTGAGCCACAGCACCCTACCTCATTT < 41bp 0.452196736315074 0.798072997653765 0.03353402 0.03185138 prediction 0.59614599530753 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842033 chr7:44842037 . . 0 25 hm5C_associated_SNPs_102069 0 0 1 9 44842029 44842050 mRNA hsa-miR-98 PPIA miRanda miRanda
8099 chr7 44842037 44842037 1 + C A rs539726282 44842033 + 44842013 44842053 41 GCTGAGATTACAGATGTGAGCCACCGCACCCTACCTCATTT GCTGAGATTACAGATGTGAGCCACAGCACCCTACCTCATTT < 41bp 0.452196736315074 0.798072997653765 0.03353402 0.03185138 prediction 0.59614599530753 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842033 chr7:44842037 . . 0 25 hm5C_associated_SNPs_102069 0 0 1 9 44842030 44842050 mRNA hsa-let-7g PPIA miRanda miRanda
8100 chr7 44842037 44842037 1 + C A rs539726282 44842033 + 44842013 44842053 41 GCTGAGATTACAGATGTGAGCCACCGCACCCTACCTCATTT GCTGAGATTACAGATGTGAGCCACAGCACCCTACCTCATTT < 41bp 0.452196736315074 0.798072997653765 0.03353402 0.03185138 prediction 0.59614599530753 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842033 chr7:44842037 . . 0 25 hm5C_associated_SNPs_102069 0 0 1 9 44842028 44842050 mRNA hsa-let-7i PPIA miRanda miRanda
8101 chr17 74465363 74465363 1 + T A LIHC 74465359 + 74465339 74465379 41 GCTGGTTCGAGGAGGGCTGCCTTGTGGCCTTCATCATCGGC GCTGGTTCGAGGAGGGCTGCCTTGAGGCCTTCATCATCGGC < 41bp 0.514254311118969 0.812224556835144 0.048776656 0.09633112 prediction 0.59594049143235 Functional Gain - AANAT ENSG00000129673 CDS Human protein_coding chr17:74465359 chr17:74465363 nonsynonymous SNV 0.810 4 25 hm5C_associated_SNPs_102076 0 0 0 1 74465352 74465377 mRNA hsa-miR-143 AANAT miRanda miRanda
8102 chr4 39482912 39482912 1 + C A STAD 39482908 + 39482888 39482928 41 TGGCGGGAAGTGGATTGTGTCTGGCTCGGAGGATAACCTTC TGGCGGGAAGTGGATTGTGTCTGGATCGGAGGATAACCTTC < 41bp 0.579025606414207 0.876519617763562 0.044747382 0.087112725 prediction 0.59498802269871 Functional Gain - LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482908 chr4:39482912 . . 0 25 hm5C_associated_SNPs_102107 0 0 0 2 39482906 39482927 mRNA hsa-miR-154 LOC401127 miRanda miRanda
8103 chr4 39482912 39482912 1 + C A STAD 39482908 + 39482888 39482928 41 TGGCGGGAAGTGGATTGTGTCTGGCTCGGAGGATAACCTTC TGGCGGGAAGTGGATTGTGTCTGGATCGGAGGATAACCTTC < 41bp 0.579025606414207 0.876519617763562 0.044747382 0.087112725 prediction 0.59498802269871 Functional Gain - LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482908 chr4:39482912 . . 0 25 hm5C_associated_SNPs_102107 0 0 0 2 39482893 39482917 mRNA hsa-miR-615-3p LOC401127 miRanda miRanda
8104 chr16 28848322 28848322 1 + C A rs563669491 28848318 + 28848298 28848338 41 GCTCTGCCCCTGCCCGTCCCCACCCAGTCTTGCCCTCCCAT GCTCTGCCCCTGCCCGTCCCCACCAAGTCTTGCCCTCCCAT < 41bp 0.455600253704383 0.797431878112238 0.017962515 0.047844023 prediction 0.594863756224475 Functional Gain - ATXN2L ENSG00000260570 ncRNA_exonic Human antisense chr16:28848318 chr16:28848322 . . 0 25 hm5C_associated_SNPs_102115 0 0 1 1 28848314 28848332 mRNA hsa-miR-31 ATXN2L miRanda miRanda
8105 chr2 217526674 217526674 1 + C A STAD 217526670 + 217526650 217526690 41 GGCCCTCTGGAGCACCTCTACTCCCTGCACATCCCCAACTG GGCCCTCTGGAGCACCTCTACTCCATGCACATCCCCAACTG < 41bp 0.614907520147868 0.91200965250467 0.23588035 0.9510912 prediction 0.594204264713603 Functional Gain - IGFBP2 ENSG00000115457 CDS Human protein_coding chr2:217526670 chr2:217526674 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_102138 0 0 1 2 217526673 217526694 mRNA hsa-miR-27a IGFBP2 miRanda miRanda
8106 chr2 217526674 217526674 1 + C A STAD 217526670 + 217526650 217526690 41 GGCCCTCTGGAGCACCTCTACTCCCTGCACATCCCCAACTG GGCCCTCTGGAGCACCTCTACTCCATGCACATCCCCAACTG < 41bp 0.614907520147868 0.91200965250467 0.23588035 0.9510912 prediction 0.594204264713603 Functional Gain - IGFBP2 ENSG00000115457 CDS Human protein_coding chr2:217526670 chr2:217526674 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_102138 0 0 1 2 217526673 217526694 mRNA hsa-miR-27b IGFBP2 miRanda miRanda
8107 chr5 42801014 42801014 1 + T G UCEC 42801011 + 42800991 42801031 41 GATGGGAGGTTTTCTTTACACTGTCAGGTGATTGCAGACCC GATGGGAGGTTTTCTTTACACTGGCAGGTGATTGCAGACCC < 41bp 0.565358997623835 0.862298392543742 0.008116454 0.0198839 prediction 0.593878789839814 Functional Gain - SELENOP ENSG00000250722 CDS Human protein_coding chr5:42801011 chr5:42801014 unknown 1.000 0 24 hm5C_associated_SNPs_102145 0 0 0 1 42801014 42801036 mRNA hsa-miR-212 CCDC152 miRanda miRanda
8108 chr2 132163927 132163927 1 + C A rs532043733 132163923 + 132163903 132163943 41 CATCTCAGCTGCTTCCAGTTCAGGCAATTACGAATACAGCT CATCTCAGCTGCTTCCAGTTCAGGAAATTACGAATACAGCT < 41bp 0.559832996749291 0.856563077427693 0.8057014 0.8599342 prediction 0.593460161356802 Functional Gain - LINC01120 ENSG00000223631 ncRNA_intronic Human lincRNA chr2:132163923 chr2:132163927 . . 0 25 hm5C_associated_SNPs_102165 0 0 0 5 132163926 132163947 mRNA hsa-miR-34a LOC389043 miRanda miRanda
8109 chr2 132163927 132163927 1 + C A rs532043733 132163923 + 132163903 132163943 41 CATCTCAGCTGCTTCCAGTTCAGGCAATTACGAATACAGCT CATCTCAGCTGCTTCCAGTTCAGGAAATTACGAATACAGCT < 41bp 0.559832996749291 0.856563077427693 0.8057014 0.8599342 prediction 0.593460161356802 Functional Gain - LINC01120 ENSG00000223631 ncRNA_intronic Human lincRNA chr2:132163923 chr2:132163927 . . 0 25 hm5C_associated_SNPs_102165 0 0 0 5 132163926 132163947 mRNA hsa-miR-34c-5p LOC389043 miRanda miRanda
8110 chr2 132163927 132163927 1 + C A rs532043733 132163923 + 132163903 132163943 41 CATCTCAGCTGCTTCCAGTTCAGGCAATTACGAATACAGCT CATCTCAGCTGCTTCCAGTTCAGGAAATTACGAATACAGCT < 41bp 0.559832996749291 0.856563077427693 0.8057014 0.8599342 prediction 0.593460161356802 Functional Gain - LINC01120 ENSG00000223631 ncRNA_intronic Human lincRNA chr2:132163923 chr2:132163927 . . 0 25 hm5C_associated_SNPs_102165 0 0 0 5 132163925 132163947 mRNA hsa-miR-449a LOC389043 miRanda miRanda
8111 chr2 132163927 132163927 1 + C A rs532043733 132163923 + 132163903 132163943 41 CATCTCAGCTGCTTCCAGTTCAGGCAATTACGAATACAGCT CATCTCAGCTGCTTCCAGTTCAGGAAATTACGAATACAGCT < 41bp 0.559832996749291 0.856563077427693 0.8057014 0.8599342 prediction 0.593460161356802 Functional Gain - LINC01120 ENSG00000223631 ncRNA_intronic Human lincRNA chr2:132163923 chr2:132163927 . . 0 25 hm5C_associated_SNPs_102165 0 0 0 5 132163922 132163944 mRNA hsa-miR-590-5p LOC389043 miRanda miRanda
8112 chr2 132163927 132163927 1 + C A rs532043733 132163923 + 132163903 132163943 41 CATCTCAGCTGCTTCCAGTTCAGGCAATTACGAATACAGCT CATCTCAGCTGCTTCCAGTTCAGGAAATTACGAATACAGCT < 41bp 0.559832996749291 0.856563077427693 0.8057014 0.8599342 prediction 0.593460161356802 Functional Gain - LINC01120 ENSG00000223631 ncRNA_intronic Human lincRNA chr2:132163923 chr2:132163927 . . 0 25 hm5C_associated_SNPs_102165 0 0 0 5 132163925 132163947 mRNA hsa-miR-449b LOC389043 miRanda miRanda
8113 chr20 16730619 16730619 1 + T G STAD 16730617 + 16730597 16730637 41 GGAACTTGGTCAAGGAACAGCGTGTGTACCAGGAAGCTACC GGAACTTGGTCAAGGAACAGCGGGTGTACCAGGAAGCTACC < 41bp 0.536371396574122 0.833026137626223 0.42325574 0.9114923 prediction 0.593309482104202 Functional Gain - OTOR ENSG00000125879 CDS Human protein_coding chr20:16730617 chr20:16730619 synonymous SNV . 0 23 hm5C_associated_SNPs_102177 0 0 0 1 16730602 16730624 mRNA hsa-miR-362-3p OTOR miRanda miRanda
8114 chr19 9745204 9745204 1 + C A rs143393723 9745200 + 9745180 9745220 41 GTCTTTCCCGCCGACCAAAACTGCCCTTCACTATCACTGTA GTCTTTCCCGCCGACCAAAACTGCACTTCACTATCACTGTA < 41bp 0.450773811272117 0.79651761197993 0.21255392 0.32229528 prediction 0.593035223959861 Functional Gain - ZNF561-AS1 ENSG00000267106 UTR3 Human processed_transcript chr19:9745200 chr19:9745204 . . 0 25 hm5C_associated_SNPs_102191 0 0 0 1 9745201 9745220 mRNA hsa-miR-144 LOC284385 miRanda miRanda
8115 chr8 36780120 36780120 1 + C A UCEC 36780116 + 36780096 36780136 41 TTCTACGGGCACTGTTTTTTCCGGCAGCTTCTTGGATTCTC TTCTACGGGCACTGTTTTTTCCGGAAGCTTCTTGGATTCTC < 41bp 0.407072573399148 0.796285050084238 0.8434937 0.89053404 prediction 0.592570100168477 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36780116 chr8:36780120 synonymous SNV . 0 25 hm5C_associated_SNPs_102212 0 0 0 1 36780106 36780125 mRNA hsa-miR-22 KCNU1 miRanda miRanda
8116 chr10 73122361 73122361 1 + T A UCEC 73122357 + 73122337 73122377 41 GCTCTACCCTCCTGGTGCACCTCATCTAGAAGGGAGGACAC GCTCTACCCTCCTGGTGCACCTCAACTAGAAGGGAGGACAC < 41bp 0.530266987641991 0.826343181170327 0.23090124 0.7812454 prediction 0.592152387056671 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73122357 chr10:73122361 nonsynonymous SNV 0.774 3 25 hm5C_associated_SNPs_102222 0 0 1 1 73122361 73122380 mRNA hsa-miR-599 SLC29A3 miRanda miRanda
8117 chr3 195452953 195452953 1 + T A OV 195452949 + 195452929 195452969 41 CACCACAGAGTCAGCTGCACCTGATGCCACGGTTGGGACCC CACCACAGAGTCAGCTGCACCTGAAGCCACGGTTGGGACCC < 41bp 0.514232541827948 0.809940367678579 0.4165903 0.45523453 prediction 0.591415651701262 Functional Gain - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195452949 chr3:195452953 nonsynonymous SNV 0.023 0 25 hm5C_associated_SNPs_102255 0 0 0 1 195452934 195452957 mRNA hsa-miR-24 MUC20 miRanda miRanda
8118 chr16 22926316 22926316 1 + C A LUAD 22926312 + 22926292 22926332 41 CCAGATCACGCTGGAGAAGACGCCCAGCTACTTTGTCACTC CCAGATCACGCTGGAGAAGACGCCAAGCTACTTTGTCACTC < 41bp 0.612776386014402 0.908114289747633 0.27141255 0.7406411 prediction 0.590675807466461 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926312 chr16:22926316 synonymous SNV . 0 25 hm5C_associated_SNPs_102288 0 0 0 1 22926303 22926326 mRNA hsa-miR-93 HS3ST2 miRanda miRanda
8119 chr12 21669040 21669040 1 + T G rs184561186 21669037 + 21669017 21669057 41 CTTTTTAGAAATGTCCACTGCAATGGCAAAAATATTTCCAG CTTTTTAGAAATGTCCACTGCAAGGGCAAAAATATTTCCAG < 41bp 0.442056925397028 0.795221170476329 0.25890124 0.55149245 prediction 0.590442340952659 Functional Gain - GOLT1B ENSG00000111711 UTR3 Human protein_coding chr12:21669037 chr12:21669040 . . 0 24 hm5C_associated_SNPs_102301 0 0 1 3 21669023 21669045 mRNA hsa-miR-33a GOLT1B miRanda miRanda
8120 chr12 21669040 21669040 1 + T G rs184561186 21669037 + 21669017 21669057 41 CTTTTTAGAAATGTCCACTGCAATGGCAAAAATATTTCCAG CTTTTTAGAAATGTCCACTGCAAGGGCAAAAATATTTCCAG < 41bp 0.442056925397028 0.795221170476329 0.25890124 0.55149245 prediction 0.590442340952659 Functional Gain - GOLT1B ENSG00000111711 UTR3 Human protein_coding chr12:21669037 chr12:21669040 . . 0 24 hm5C_associated_SNPs_102301 0 0 1 3 21669025 21669049 mRNA hsa-miR-129-5p GOLT1B miRanda miRanda
8121 chr12 21669040 21669040 1 + T G rs184561186 21669037 + 21669017 21669057 41 CTTTTTAGAAATGTCCACTGCAATGGCAAAAATATTTCCAG CTTTTTAGAAATGTCCACTGCAAGGGCAAAAATATTTCCAG < 41bp 0.442056925397028 0.795221170476329 0.25890124 0.55149245 prediction 0.590442340952659 Functional Gain - GOLT1B ENSG00000111711 UTR3 Human protein_coding chr12:21669037 chr12:21669040 . . 0 24 hm5C_associated_SNPs_102301 0 0 1 3 21669024 21669045 mRNA hsa-miR-33b GOLT1B miRanda miRanda
8122 chr9 84533280 84533280 1 + C A KICH 84533276 + 84533256 84533296 41 GTCTGGACAACTGAGGATGGCAGACAGACTTTTCTGCCCCC GTCTGGACAACTGAGGATGGCAGAAAGACTTTTCTGCCCCC < 41bp 0.539990116894662 0.835118585849908 0.2438403 0.31719643 prediction 0.590256937910492 Functional Gain - SPATA31D5P ENSG00000240632 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:84533276 chr9:84533280 . . 0 25 hm5C_associated_SNPs_102308 0 0 0 1 84533259 84533281 mRNA hsa-miR-346 FLJ43950 miRanda miRanda
8123 chr12 66716532 66716532 1 + T A UCEC 66716528 + 66716508 66716548 41 GACTGTGATCTAATTAATGACTGCTGCTGCAAACACTACAC GACTGTGATCTAATTAATGACTGCAGCTGCAAACACTACAC < 41bp 0.520263268567499 0.814904962863289 0.12302905 0.14585745 prediction 0.589283388591581 Functional Gain - HELB ENSG00000127311 CDS Human protein_coding chr12:66716528 chr12:66716532 nonsynonymous SNV 0.932 4 25 hm5C_associated_SNPs_102344 0 0 0 7 66716515 66716536 mRNA hsa-miR-15a HELB miRanda miRanda
8124 chr12 66716532 66716532 1 + T A UCEC 66716528 + 66716508 66716548 41 GACTGTGATCTAATTAATGACTGCTGCTGCAAACACTACAC GACTGTGATCTAATTAATGACTGCAGCTGCAAACACTACAC < 41bp 0.520263268567499 0.814904962863289 0.12302905 0.14585745 prediction 0.589283388591581 Functional Gain - HELB ENSG00000127311 CDS Human protein_coding chr12:66716528 chr12:66716532 nonsynonymous SNV 0.932 4 25 hm5C_associated_SNPs_102344 0 0 0 7 66716515 66716536 mRNA hsa-miR-16 HELB miRanda miRanda
8125 chr12 66716532 66716532 1 + T A UCEC 66716528 + 66716508 66716548 41 GACTGTGATCTAATTAATGACTGCTGCTGCAAACACTACAC GACTGTGATCTAATTAATGACTGCAGCTGCAAACACTACAC < 41bp 0.520263268567499 0.814904962863289 0.12302905 0.14585745 prediction 0.589283388591581 Functional Gain - HELB ENSG00000127311 CDS Human protein_coding chr12:66716528 chr12:66716532 nonsynonymous SNV 0.932 4 25 hm5C_associated_SNPs_102344 0 0 0 7 66716516 66716536 mRNA hsa-miR-15b HELB miRanda miRanda
8126 chr12 66716532 66716532 1 + T A UCEC 66716528 + 66716508 66716548 41 GACTGTGATCTAATTAATGACTGCTGCTGCAAACACTACAC GACTGTGATCTAATTAATGACTGCAGCTGCAAACACTACAC < 41bp 0.520263268567499 0.814904962863289 0.12302905 0.14585745 prediction 0.589283388591581 Functional Gain - HELB ENSG00000127311 CDS Human protein_coding chr12:66716528 chr12:66716532 nonsynonymous SNV 0.932 4 25 hm5C_associated_SNPs_102344 0 0 0 7 66716525 66716547 mRNA hsa-miR-142-3p HELB miRanda miRanda
8127 chr12 66716532 66716532 1 + T A UCEC 66716528 + 66716508 66716548 41 GACTGTGATCTAATTAATGACTGCTGCTGCAAACACTACAC GACTGTGATCTAATTAATGACTGCAGCTGCAAACACTACAC < 41bp 0.520263268567499 0.814904962863289 0.12302905 0.14585745 prediction 0.589283388591581 Functional Gain - HELB ENSG00000127311 CDS Human protein_coding chr12:66716528 chr12:66716532 nonsynonymous SNV 0.932 4 25 hm5C_associated_SNPs_102344 0 0 0 7 66716514 66716536 mRNA hsa-miR-195 HELB miRanda miRanda
8128 chr12 66716532 66716532 1 + T A UCEC 66716528 + 66716508 66716548 41 GACTGTGATCTAATTAATGACTGCTGCTGCAAACACTACAC GACTGTGATCTAATTAATGACTGCAGCTGCAAACACTACAC < 41bp 0.520263268567499 0.814904962863289 0.12302905 0.14585745 prediction 0.589283388591581 Functional Gain - HELB ENSG00000127311 CDS Human protein_coding chr12:66716528 chr12:66716532 nonsynonymous SNV 0.932 4 25 hm5C_associated_SNPs_102344 0 0 0 7 66716515 66716536 mRNA hsa-miR-424 HELB miRanda miRanda
8129 chr12 66716532 66716532 1 + T A UCEC 66716528 + 66716508 66716548 41 GACTGTGATCTAATTAATGACTGCTGCTGCAAACACTACAC GACTGTGATCTAATTAATGACTGCAGCTGCAAACACTACAC < 41bp 0.520263268567499 0.814904962863289 0.12302905 0.14585745 prediction 0.589283388591581 Functional Gain - HELB ENSG00000127311 CDS Human protein_coding chr12:66716528 chr12:66716532 nonsynonymous SNV 0.932 4 25 hm5C_associated_SNPs_102344 0 0 0 7 66716516 66716536 mRNA hsa-miR-497 HELB miRanda miRanda
8130 chr14 23236556 23236556 1 + T G LAML 23236553 + 23236533 23236573 41 GCTGCTGTCGCCCACACTACCTCTTCCTTGCGGCTTCCGGC GCTGCTGTCGCCCACACTACCTCGTCCTTGCGGCTTCCGGC < 41bp 0.406253400885512 0.794421213457372 0.0870789 0.14899367 prediction 0.588842426914745 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23236553 chr14:23236556 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_102359 0 0 1 9 23236535 23236556 mRNA hsa-let-7a OXA1L miRanda miRanda
8131 chr14 23236556 23236556 1 + T G LAML 23236553 + 23236533 23236573 41 GCTGCTGTCGCCCACACTACCTCTTCCTTGCGGCTTCCGGC GCTGCTGTCGCCCACACTACCTCGTCCTTGCGGCTTCCGGC < 41bp 0.406253400885512 0.794421213457372 0.0870789 0.14899367 prediction 0.588842426914745 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23236553 chr14:23236556 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_102359 0 0 1 9 23236538 23236556 mRNA hsa-let-7b OXA1L miRanda miRanda
8132 chr14 23236556 23236556 1 + T G LAML 23236553 + 23236533 23236573 41 GCTGCTGTCGCCCACACTACCTCTTCCTTGCGGCTTCCGGC GCTGCTGTCGCCCACACTACCTCGTCCTTGCGGCTTCCGGC < 41bp 0.406253400885512 0.794421213457372 0.0870789 0.14899367 prediction 0.588842426914745 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23236553 chr14:23236556 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_102359 0 0 1 9 23236535 23236556 mRNA hsa-let-7c OXA1L miRanda miRanda
8133 chr14 23236556 23236556 1 + T G LAML 23236553 + 23236533 23236573 41 GCTGCTGTCGCCCACACTACCTCTTCCTTGCGGCTTCCGGC GCTGCTGTCGCCCACACTACCTCGTCCTTGCGGCTTCCGGC < 41bp 0.406253400885512 0.794421213457372 0.0870789 0.14899367 prediction 0.588842426914745 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23236553 chr14:23236556 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_102359 0 0 1 9 23236535 23236556 mRNA hsa-let-7d OXA1L miRanda miRanda
8134 chr14 23236556 23236556 1 + T G LAML 23236553 + 23236533 23236573 41 GCTGCTGTCGCCCACACTACCTCTTCCTTGCGGCTTCCGGC GCTGCTGTCGCCCACACTACCTCGTCCTTGCGGCTTCCGGC < 41bp 0.406253400885512 0.794421213457372 0.0870789 0.14899367 prediction 0.588842426914745 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23236553 chr14:23236556 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_102359 0 0 1 9 23236535 23236556 mRNA hsa-let-7e OXA1L miRanda miRanda
8135 chr14 23236556 23236556 1 + T G LAML 23236553 + 23236533 23236573 41 GCTGCTGTCGCCCACACTACCTCTTCCTTGCGGCTTCCGGC GCTGCTGTCGCCCACACTACCTCGTCCTTGCGGCTTCCGGC < 41bp 0.406253400885512 0.794421213457372 0.0870789 0.14899367 prediction 0.588842426914745 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23236553 chr14:23236556 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_102359 0 0 1 9 23236535 23236556 mRNA hsa-let-7f OXA1L miRanda miRanda
8136 chr14 23236556 23236556 1 + T G LAML 23236553 + 23236533 23236573 41 GCTGCTGTCGCCCACACTACCTCTTCCTTGCGGCTTCCGGC GCTGCTGTCGCCCACACTACCTCGTCCTTGCGGCTTCCGGC < 41bp 0.406253400885512 0.794421213457372 0.0870789 0.14899367 prediction 0.588842426914745 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23236553 chr14:23236556 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_102359 0 0 1 9 23236535 23236556 mRNA hsa-miR-98 OXA1L miRanda miRanda
8137 chr14 23236556 23236556 1 + T G LAML 23236553 + 23236533 23236573 41 GCTGCTGTCGCCCACACTACCTCTTCCTTGCGGCTTCCGGC GCTGCTGTCGCCCACACTACCTCGTCCTTGCGGCTTCCGGC < 41bp 0.406253400885512 0.794421213457372 0.0870789 0.14899367 prediction 0.588842426914745 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23236553 chr14:23236556 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_102359 0 0 1 9 23236535 23236556 mRNA hsa-let-7g OXA1L miRanda miRanda
8138 chr14 23236556 23236556 1 + T G LAML 23236553 + 23236533 23236573 41 GCTGCTGTCGCCCACACTACCTCTTCCTTGCGGCTTCCGGC GCTGCTGTCGCCCACACTACCTCGTCCTTGCGGCTTCCGGC < 41bp 0.406253400885512 0.794421213457372 0.0870789 0.14899367 prediction 0.588842426914745 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23236553 chr14:23236556 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_102359 0 0 1 9 23236536 23236556 mRNA hsa-let-7i OXA1L miRanda miRanda
8139 chr15 44581275 44581275 1 + C A KIRC 44581271 + 44581251 44581291 41 GCGGGCTGGCCGCCTGCCCTCTCTCGTGCTGGTGGTGCTGC GCGGGCTGGCCGCCTGCCCTCTCTAGTGCTGGTGGTGCTGC < 41bp 0.597313431808764 0.891576689735501 0.044413835 0.68539095 prediction 0.588526515853472 Functional Gain - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44581271 chr15:44581275 synonymous SNV . 0 25 hm5C_associated_SNPs_102372 0 0 1 6 44581273 44581293 mRNA hsa-miR-15a CASC4 miRanda miRanda
8140 chr15 44581275 44581275 1 + C A KIRC 44581271 + 44581251 44581291 41 GCGGGCTGGCCGCCTGCCCTCTCTCGTGCTGGTGGTGCTGC GCGGGCTGGCCGCCTGCCCTCTCTAGTGCTGGTGGTGCTGC < 41bp 0.597313431808764 0.891576689735501 0.044413835 0.68539095 prediction 0.588526515853472 Functional Gain - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44581271 chr15:44581275 synonymous SNV . 0 25 hm5C_associated_SNPs_102372 0 0 1 6 44581271 44581293 mRNA hsa-miR-16 CASC4 miRanda miRanda
8141 chr15 44581275 44581275 1 + C A KIRC 44581271 + 44581251 44581291 41 GCGGGCTGGCCGCCTGCCCTCTCTCGTGCTGGTGGTGCTGC GCGGGCTGGCCGCCTGCCCTCTCTAGTGCTGGTGGTGCTGC < 41bp 0.597313431808764 0.891576689735501 0.044413835 0.68539095 prediction 0.588526515853472 Functional Gain - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44581271 chr15:44581275 synonymous SNV . 0 25 hm5C_associated_SNPs_102372 0 0 1 6 44581271 44581293 mRNA hsa-miR-15b CASC4 miRanda miRanda
8142 chr15 44581275 44581275 1 + C A KIRC 44581271 + 44581251 44581291 41 GCGGGCTGGCCGCCTGCCCTCTCTCGTGCTGGTGGTGCTGC GCGGGCTGGCCGCCTGCCCTCTCTAGTGCTGGTGGTGCTGC < 41bp 0.597313431808764 0.891576689735501 0.044413835 0.68539095 prediction 0.588526515853472 Functional Gain - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44581271 chr15:44581275 synonymous SNV . 0 25 hm5C_associated_SNPs_102372 0 0 1 6 44581273 44581293 mRNA hsa-miR-195 CASC4 miRanda miRanda
8143 chr15 44581275 44581275 1 + C A KIRC 44581271 + 44581251 44581291 41 GCGGGCTGGCCGCCTGCCCTCTCTCGTGCTGGTGGTGCTGC GCGGGCTGGCCGCCTGCCCTCTCTAGTGCTGGTGGTGCTGC < 41bp 0.597313431808764 0.891576689735501 0.044413835 0.68539095 prediction 0.588526515853472 Functional Gain - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44581271 chr15:44581275 synonymous SNV . 0 25 hm5C_associated_SNPs_102372 0 0 1 6 44581272 44581293 mRNA hsa-miR-424 CASC4 miRanda miRanda
8144 chr15 44581275 44581275 1 + C A KIRC 44581271 + 44581251 44581291 41 GCGGGCTGGCCGCCTGCCCTCTCTCGTGCTGGTGGTGCTGC GCGGGCTGGCCGCCTGCCCTCTCTAGTGCTGGTGGTGCTGC < 41bp 0.597313431808764 0.891576689735501 0.044413835 0.68539095 prediction 0.588526515853472 Functional Gain - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44581271 chr15:44581275 synonymous SNV . 0 25 hm5C_associated_SNPs_102372 0 0 1 6 44581272 44581293 mRNA hsa-miR-497 CASC4 miRanda miRanda
8145 chrX 48126808 48126808 1 + T G rs12396577 48126805 + 48126785 48126825 41 AGCCCCCCTCACTCTGTTTCCTGTTCAGCATGTACTCCCCT AGCCCCCCTCACTCTGTTTCCTGGTCAGCATGTACTCCCCT < 41bp 0.479812951776121 0.793310718867068 0.09919393 0.31325817 prediction 0.586621437734136 Functional Gain - SSX1 ENSG00000126752 UTR3 Human protein_coding chrX:48126805 chrX:48126808 . . 0 24 hm5C_associated_SNPs_102441 0 0 1 1 48126796 48126819 mRNA hsa-miR-155 SSX1 miRanda miRanda
8146 chr16 29381732 29381732 1 + C A rs555905133 29381728 + 29381708 29381748 41 CCTCCCGAGTAGTTGGACTACAGGCGTGCACCAACAGGGCC CCTCCCGAGTAGTTGGACTACAGGAGTGCACCAACAGGGCC < 41bp 0.458264835142259 0.793077273274276 0.6637336 0.5355296 prediction 0.586154546548553 Functional Gain - SNX29P2;NPIPB11 ENSG00000198106 ncRNA_exonic Human lincRNA chr16:29381728 chr16:29381732 . . 0 25 hm5C_associated_SNPs_102460 0 0 0 3 29381731 29381752 mRNA hsa-miR-193a-3p RUNDC2C miRanda miRanda
8147 chr16 29381732 29381732 1 + C A rs555905133 29381728 + 29381708 29381748 41 CCTCCCGAGTAGTTGGACTACAGGCGTGCACCAACAGGGCC CCTCCCGAGTAGTTGGACTACAGGAGTGCACCAACAGGGCC < 41bp 0.458264835142259 0.793077273274276 0.6637336 0.5355296 prediction 0.586154546548553 Functional Gain - SNX29P2;NPIPB11 ENSG00000198106 ncRNA_exonic Human lincRNA chr16:29381728 chr16:29381732 . . 0 25 hm5C_associated_SNPs_102460 0 0 0 3 29381727 29381750 mRNA hsa-miR-328 RUNDC2C miRanda miRanda
8148 chr16 29381732 29381732 1 + C A rs555905133 29381728 + 29381708 29381748 41 CCTCCCGAGTAGTTGGACTACAGGCGTGCACCAACAGGGCC CCTCCCGAGTAGTTGGACTACAGGAGTGCACCAACAGGGCC < 41bp 0.458264835142259 0.793077273274276 0.6637336 0.5355296 prediction 0.586154546548553 Functional Gain - SNX29P2;NPIPB11 ENSG00000198106 ncRNA_exonic Human lincRNA chr16:29381728 chr16:29381732 . . 0 25 hm5C_associated_SNPs_102460 0 0 0 3 29381730 29381752 mRNA hsa-miR-193b RUNDC2C miRanda miRanda
8149 chr17 79639902 79639902 1 + C G rs372530090 79639901 + 79639881 79639921 41 ATCTTGCAGGGGGTGAGTGCCCGATGGACTAGGGCCAAGGC ATCTTGCAGGGGGTGAGTGCCGGATGGACTAGGGCCAAGGC < 41bp 0.504354269649389 0.797396160944594 0.3329227 0.912655 prediction 0.58608378259041 Functional Gain - CCDC137 ENSG00000185298 UTR3 Human protein_coding chr17:79639901 chr17:79639902 . . 0 22 hm5C_associated_SNPs_102465 0 0 1 1 79639896 79639918 mRNA hsa-miR-328 CCDC137 miRanda miRanda
8150 chr6 116566467 116566467 1 + T G rs76809089 116566464 + 116566444 116566484 41 TTAGAAAACACACTGGTTTTCACTATCTGGTTTACAAACAC TTAGAAAACACACTGGTTTTCACGATCTGGTTTACAAACAC < 41bp 0.517857061632402 0.809862416331849 0.025563508 0.118432224 prediction 0.584010709398895 Functional Gain - NT5DC1 ENSG00000178425 UTR3 Human protein_coding chr6:116566464 chr6:116566467 . . 0 24 hm5C_associated_SNPs_102559 0 0 1 6 116566458 116566479 mRNA hsa-miR-30a NT5DC1 miRanda miRanda
8151 chr6 116566467 116566467 1 + T G rs76809089 116566464 + 116566444 116566484 41 TTAGAAAACACACTGGTTTTCACTATCTGGTTTACAAACAC TTAGAAAACACACTGGTTTTCACGATCTGGTTTACAAACAC < 41bp 0.517857061632402 0.809862416331849 0.025563508 0.118432224 prediction 0.584010709398895 Functional Gain - NT5DC1 ENSG00000178425 UTR3 Human protein_coding chr6:116566464 chr6:116566467 . . 0 24 hm5C_associated_SNPs_102559 0 0 1 6 116566457 116566479 mRNA hsa-miR-30c NT5DC1 miRanda miRanda
8152 chr6 116566467 116566467 1 + T G rs76809089 116566464 + 116566444 116566484 41 TTAGAAAACACACTGGTTTTCACTATCTGGTTTACAAACAC TTAGAAAACACACTGGTTTTCACGATCTGGTTTACAAACAC < 41bp 0.517857061632402 0.809862416331849 0.025563508 0.118432224 prediction 0.584010709398895 Functional Gain - NT5DC1 ENSG00000178425 UTR3 Human protein_coding chr6:116566464 chr6:116566467 . . 0 24 hm5C_associated_SNPs_102559 0 0 1 6 116566458 116566479 mRNA hsa-miR-30d NT5DC1 miRanda miRanda
8153 chr6 116566467 116566467 1 + T G rs76809089 116566464 + 116566444 116566484 41 TTAGAAAACACACTGGTTTTCACTATCTGGTTTACAAACAC TTAGAAAACACACTGGTTTTCACGATCTGGTTTACAAACAC < 41bp 0.517857061632402 0.809862416331849 0.025563508 0.118432224 prediction 0.584010709398895 Functional Gain - NT5DC1 ENSG00000178425 UTR3 Human protein_coding chr6:116566464 chr6:116566467 . . 0 24 hm5C_associated_SNPs_102559 0 0 1 6 116566458 116566479 mRNA hsa-miR-30b NT5DC1 miRanda miRanda
8154 chr6 116566467 116566467 1 + T G rs76809089 116566464 + 116566444 116566484 41 TTAGAAAACACACTGGTTTTCACTATCTGGTTTACAAACAC TTAGAAAACACACTGGTTTTCACGATCTGGTTTACAAACAC < 41bp 0.517857061632402 0.809862416331849 0.025563508 0.118432224 prediction 0.584010709398895 Functional Gain - NT5DC1 ENSG00000178425 UTR3 Human protein_coding chr6:116566464 chr6:116566467 . . 0 24 hm5C_associated_SNPs_102559 0 0 1 6 116566458 116566479 mRNA hsa-miR-30e NT5DC1 miRanda miRanda
8155 chr6 116566467 116566467 1 + T G rs76809089 116566464 + 116566444 116566484 41 TTAGAAAACACACTGGTTTTCACTATCTGGTTTACAAACAC TTAGAAAACACACTGGTTTTCACGATCTGGTTTACAAACAC < 41bp 0.517857061632402 0.809862416331849 0.025563508 0.118432224 prediction 0.584010709398895 Functional Gain - NT5DC1 ENSG00000178425 UTR3 Human protein_coding chr6:116566464 chr6:116566467 . . 0 24 hm5C_associated_SNPs_102559 0 0 1 6 116566467 116566489 mRNA hsa-miR-190b NT5DC1 miRanda miRanda
8156 chr19 50028359 50028359 1 + T G rs138667454 50028356 + 50028336 50028376 41 CTTCCTGGAATCTGACCATTCGTTGTCTGCTATGCCCGTCC CTTCCTGGAATCTGACCATTCGTGGTCTGCTATGCCCGTCC < 41bp 0.450369960212895 0.791956885913227 0.16802189 0.9014058 prediction 0.583913771826454 Functional Gain - FCGRT ENSG00000104870 UTR3 Human protein_coding chr19:50028356 chr19:50028359 . . 0 24 hm5C_associated_SNPs_102563 0 0 1 2 50028345 50028367 mRNA hsa-miR-15a FCGRT miRanda miRanda
8157 chr19 50028359 50028359 1 + T G rs138667454 50028356 + 50028336 50028376 41 CTTCCTGGAATCTGACCATTCGTTGTCTGCTATGCCCGTCC CTTCCTGGAATCTGACCATTCGTGGTCTGCTATGCCCGTCC < 41bp 0.450369960212895 0.791956885913227 0.16802189 0.9014058 prediction 0.583913771826454 Functional Gain - FCGRT ENSG00000104870 UTR3 Human protein_coding chr19:50028356 chr19:50028359 . . 0 24 hm5C_associated_SNPs_102563 0 0 1 2 50028345 50028367 mRNA hsa-miR-424 FCGRT miRanda miRanda
8158 chr13 103504506 103504506 1 + C G DLBC 103504505 + 103504485 103504525 41 AACCAAGCACTTAAAGGAGTCCGGGATCGCCATGGGAACTC AACCAAGCACTTAAAGGAGTCGGGGATCGCCATGGGAACTC < 41bp 0.513765588861504 0.805407375426848 0.123099595 0.5476533 prediction 0.583283573130689 Functional Gain - BIVM-ERCC5;ERCC5 ENSG00000134899;ENSG00000270181 CDS Human other chr13:103504505 chr13:103504506 nonsynonymous SNV 0.727 4 22 hm5C_associated_SNPs_102595 0 0 1 1 103504485 103504508 mRNA hsa-miR-127-3p ERCC5 miRanda miRanda
8159 chr2 46414434 46414434 1 + C A rs3738893 46414430 + 46414410 46414450 41 AGTCAAATAATACATTCCACCTGGCAGCTGAAGGCAGCCAG AGTCAAATAATACATTCCACCTGGAAGCTGAAGGCAGCCAG < 41bp 0.490606779812961 0.79053040187722 0.04664895 0.13470444 prediction 0.581060803754439 Functional Gain - PRKCE ENSG00000171132 UTR3 Human protein_coding chr2:46414430 chr2:46414434 . . 0 25 hm5C_associated_SNPs_102686 0 0 0 1 46414418 46414439 mRNA hsa-miR-22 PRKCE miRanda miRanda
8160 chr3 157289088 157289088 1 + C A SARC 157289084 + 157289064 157289104 41 GCTGCTACCTGACTAACCAACTGCCTATTCAGGTAAAAGTT GCTGCTACCTGACTAACCAACTGCATATTCAGGTAAAAGTT < 41bp 0.378644905032318 0.790508784845359 0.39021122 0.5416651 prediction 0.581017569690718 Functional Gain - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157289084 chr3:157289088 nonsynonymous SNV 0.145 1 25 hm5C_associated_SNPs_102690 0 0 0 1 157289074 157289095 mRNA hsa-miR-488 C3orf55 miRanda miRanda
8161 chr2 99802708 99802708 1 + C A ESCA 99802704 + 99802684 99802724 41 CTTAGTAGTTCAATGGCCCCCAGGCAGACTACAGGTAAGTG CTTAGTAGTTCAATGGCCCCCAGGAAGACTACAGGTAAGTG < 41bp 0.407809729748931 0.790276776305507 0.08319563 0.08226898 prediction 0.580553552611015 Functional Gain - MRPL30 ENSG00000185414;ENSG00000241962;ENSG00000273155 CDS Human other chr2:99802704 chr2:99802708 synonymous SNV . 0 25 hm5C_associated_SNPs_102719 0 0 1 3 99802705 99802717 mRNA hsa-miR-27a MRPL30 miRanda miRanda
8162 chr2 99802708 99802708 1 + C A ESCA 99802704 + 99802684 99802724 41 CTTAGTAGTTCAATGGCCCCCAGGCAGACTACAGGTAAGTG CTTAGTAGTTCAATGGCCCCCAGGAAGACTACAGGTAAGTG < 41bp 0.407809729748931 0.790276776305507 0.08319563 0.08226898 prediction 0.580553552611015 Functional Gain - MRPL30 ENSG00000185414;ENSG00000241962;ENSG00000273155 CDS Human other chr2:99802704 chr2:99802708 synonymous SNV . 0 25 hm5C_associated_SNPs_102719 0 0 1 3 99802707 99802717 mRNA hsa-miR-27b MRPL30 miRanda miRanda
8163 chr2 99802708 99802708 1 + C A ESCA 99802704 + 99802684 99802724 41 CTTAGTAGTTCAATGGCCCCCAGGCAGACTACAGGTAAGTG CTTAGTAGTTCAATGGCCCCCAGGAAGACTACAGGTAAGTG < 41bp 0.407809729748931 0.790276776305507 0.08319563 0.08226898 prediction 0.580553552611015 Functional Gain - MRPL30 ENSG00000185414;ENSG00000241962;ENSG00000273155 CDS Human other chr2:99802704 chr2:99802708 synonymous SNV . 0 25 hm5C_associated_SNPs_102719 0 0 1 3 99802691 99802713 mRNA hsa-miR-346 MRPL30 miRanda miRanda
8164 chr16 75611255 75611255 1 + T G UCEC 75611252 + 75611232 75611272 41 GTGGCCTACAGCGGAGAGAACACTTTTGGCTTCTGAGGGCC GTGGCCTACAGCGGAGAGAACACGTTTGGCTTCTGAGGGCC < 41bp 0.418314340351291 0.790214838807525 0.35982525 0.4264105 prediction 0.580429677615049 Functional Gain - GABARAPL2 ENSG00000034713 CDS Human protein_coding chr16:75611252 chr16:75611255 synonymous SNV . 0 24 hm5C_associated_SNPs_102726 0 0 1 1 75611253 75611274 mRNA hsa-miR-328 GABARAPL2 miRanda miRanda
8165 chr14 23240666 23240666 1 + C G LIHC 23240665 + 23240645 23240685 41 CCTTTACGACAGACCTTTACCCACAACCCTCTCCTACAACC CCTTTACGACAGACCTTTACCGACAACCCTCTCCTACAACC < 41bp 0.493994805410527 0.789364535294423 0.070084274 0.22244725 prediction 0.578729070588845 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240665 chr14:23240666 nonsynonymous SNV 0.967 4 22 hm5C_associated_SNPs_102801 0 0 1 1 23240653 23240675 mRNA hsa-miR-296-3p OXA1L miRanda miRanda
8166 chr2 238006812 238006812 1 + T G rs535023743 238006809 + 238006789 238006829 41 CCCAGGCACAGTATCTGAATCACTGGGGATTATGATTCACC CCCAGGCACAGTATCTGAATCACGGGGGATTATGATTCACC < 41bp 0.588859804074368 0.878019769606288 0.09086943 0.3835161 prediction 0.57831993106384 Functional Gain - COPS8 ENSG00000198612 UTR3 Human protein_coding chr2:238006809 chr2:238006812 . . 0 24 hm5C_associated_SNPs_102820 0 0 1 2 238006794 238006815 mRNA hsa-miR-199a-5p COPS8 miRanda miRanda
8167 chr2 238006812 238006812 1 + T G rs535023743 238006809 + 238006789 238006829 41 CCCAGGCACAGTATCTGAATCACTGGGGATTATGATTCACC CCCAGGCACAGTATCTGAATCACGGGGGATTATGATTCACC < 41bp 0.588859804074368 0.878019769606288 0.09086943 0.3835161 prediction 0.57831993106384 Functional Gain - COPS8 ENSG00000198612 UTR3 Human protein_coding chr2:238006809 chr2:238006812 . . 0 24 hm5C_associated_SNPs_102820 0 0 1 2 238006794 238006815 mRNA hsa-miR-199b-5p COPS8 miRanda miRanda
8168 chr9 136524413 136524413 1 + C A rs151115868 136524409 + 136524389 136524429 41 CTGTAAAACCAGGCTGATGCCGTGCGGGCTAATGAGCCAAT CTGTAAAACCAGGCTGATGCCGTGAGGGCTAATGAGCCAAT < 41bp 0.495690978794186 0.788773956991369 0.1706573 0.40506327 prediction 0.577547913982738 Functional Gain - DBH ENSG00000123454 UTR3 Human protein_coding chr9:136524409 chr9:136524413 . . 0 25 hm5C_associated_SNPs_102860 0 0 0 1 136524408 136524431 mRNA hsa-miR-137 DBH miRanda miRanda
8169 chr20 39986973 39986973 1 + C A UCEC 39986969 + 39986949 39986989 41 CCACGGACAGCCCTTCTATGCTGCCTTTGGGAATAGGCCCA CCACGGACAGCCCTTCTATGCTGCATTTGGGAATAGGCCCA < 41bp 0.368027577031071 0.788579521372609 0.089746475 0.07826114 prediction 0.577159042745217 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986969 chr20:39986973 synonymous SNV . 0 25 hm5C_associated_SNPs_102876 0 0 1 2 39986953 39986973 mRNA hsa-miR-103 LPIN3 miRanda miRanda
8170 chr20 39986973 39986973 1 + C A UCEC 39986969 + 39986949 39986989 41 CCACGGACAGCCCTTCTATGCTGCCTTTGGGAATAGGCCCA CCACGGACAGCCCTTCTATGCTGCATTTGGGAATAGGCCCA < 41bp 0.368027577031071 0.788579521372609 0.089746475 0.07826114 prediction 0.577159042745217 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986969 chr20:39986973 synonymous SNV . 0 25 hm5C_associated_SNPs_102876 0 0 1 2 39986953 39986973 mRNA hsa-miR-107 LPIN3 miRanda miRanda
8171 chr19 42814809 42814809 1 + C A rs1055512 42814805 + 42814785 42814825 41 GTCCTGGACTGGAGCCCCAGCCCCCCTTCCCCACTGCCCAG GTCCTGGACTGGAGCCCCAGCCCCACTTCCCCACTGCCCAG < 41bp 0.38598774459039 0.788079127746404 0.10367325 0.23124343 prediction 0.576158255492808 Functional Gain - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814805 chr19:42814809 nonsynonymous SNV 0.076 1 25 hm5C_associated_SNPs_102923 0 0 0 6 42814802 42814823 mRNA hsa-miR-34a PRR19 miRanda miRanda
8172 chr19 42814809 42814809 1 + C A rs1055512 42814805 + 42814785 42814825 41 GTCCTGGACTGGAGCCCCAGCCCCCCTTCCCCACTGCCCAG GTCCTGGACTGGAGCCCCAGCCCCACTTCCCCACTGCCCAG < 41bp 0.38598774459039 0.788079127746404 0.10367325 0.23124343 prediction 0.576158255492808 Functional Gain - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814805 chr19:42814809 nonsynonymous SNV 0.076 1 25 hm5C_associated_SNPs_102923 0 0 0 6 42814801 42814823 mRNA hsa-miR-34c-5p PRR19 miRanda miRanda
8173 chr19 42814809 42814809 1 + C A rs1055512 42814805 + 42814785 42814825 41 GTCCTGGACTGGAGCCCCAGCCCCCCTTCCCCACTGCCCAG GTCCTGGACTGGAGCCCCAGCCCCACTTCCCCACTGCCCAG < 41bp 0.38598774459039 0.788079127746404 0.10367325 0.23124343 prediction 0.576158255492808 Functional Gain - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814805 chr19:42814809 nonsynonymous SNV 0.076 1 25 hm5C_associated_SNPs_102923 0 0 0 6 42814802 42814823 mRNA hsa-miR-449a PRR19 miRanda miRanda
8174 chr19 42814809 42814809 1 + C A rs1055512 42814805 + 42814785 42814825 41 GTCCTGGACTGGAGCCCCAGCCCCCCTTCCCCACTGCCCAG GTCCTGGACTGGAGCCCCAGCCCCACTTCCCCACTGCCCAG < 41bp 0.38598774459039 0.788079127746404 0.10367325 0.23124343 prediction 0.576158255492808 Functional Gain - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814805 chr19:42814809 nonsynonymous SNV 0.076 1 25 hm5C_associated_SNPs_102923 0 0 0 6 42814808 42814830 mRNA hsa-miR-485-5p PRR19 miRanda miRanda
8175 chr19 42814809 42814809 1 + C A rs1055512 42814805 + 42814785 42814825 41 GTCCTGGACTGGAGCCCCAGCCCCCCTTCCCCACTGCCCAG GTCCTGGACTGGAGCCCCAGCCCCACTTCCCCACTGCCCAG < 41bp 0.38598774459039 0.788079127746404 0.10367325 0.23124343 prediction 0.576158255492808 Functional Gain - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814805 chr19:42814809 nonsynonymous SNV 0.076 1 25 hm5C_associated_SNPs_102923 0 0 0 6 42814798 42814819 mRNA hsa-miR-491-5p PRR19 miRanda miRanda
8176 chr19 42814809 42814809 1 + C A rs1055512 42814805 + 42814785 42814825 41 GTCCTGGACTGGAGCCCCAGCCCCCCTTCCCCACTGCCCAG GTCCTGGACTGGAGCCCCAGCCCCACTTCCCCACTGCCCAG < 41bp 0.38598774459039 0.788079127746404 0.10367325 0.23124343 prediction 0.576158255492808 Functional Gain - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814805 chr19:42814809 nonsynonymous SNV 0.076 1 25 hm5C_associated_SNPs_102923 0 0 0 6 42814802 42814823 mRNA hsa-miR-449b PRR19 miRanda miRanda
8177 chr1 28864616 28864616 1 + C A rs577542748 28864612 + 28864592 28864632 41 GATGGCAGCGGGCCTCTCCCCAGCCCTGAGCACTGTGTCAG GATGGCAGCGGGCCTCTCCCCAGCACTGAGCACTGTGTCAG < 41bp 0.606555816700978 0.894352116098055 0.37803453 0.37926722 prediction 0.575592598794154 Functional Gain - RCC1 ENSG00000180198 UTR3 Human protein_coding chr1:28864612 chr1:28864616 . . 0 25 hm5C_associated_SNPs_102960 0 0 1 2 28864609 28864629 mRNA hsa-miR-128 SNHG3-RCC1 miRanda miRanda
8178 chr1 28864616 28864616 1 + C A rs577542748 28864612 + 28864592 28864632 41 GATGGCAGCGGGCCTCTCCCCAGCCCTGAGCACTGTGTCAG GATGGCAGCGGGCCTCTCCCCAGCACTGAGCACTGTGTCAG < 41bp 0.606555816700978 0.894352116098055 0.37803453 0.37926722 prediction 0.575592598794154 Functional Gain - RCC1 ENSG00000180198 UTR3 Human protein_coding chr1:28864612 chr1:28864616 . . 0 25 hm5C_associated_SNPs_102960 0 0 1 2 28864609 28864629 mRNA hsa-miR-128 RCC1 miRanda miRanda
8179 chr15 79603747 79603747 1 + C G LUSC 79603746 + 79603726 79603766 41 GGAGCAGGGCGTGAAGTTCTCCCTGGATTACCAGGTGAGGC GGAGCAGGGCGTGAAGTTCTCGCTGGATTACCAGGTGAGGC < 41bp 0.507775745317802 0.795403642765582 0.08158517 0.13980046 prediction 0.57525579489556 Functional Gain - TMED3 ENSG00000166557 CDS Human protein_coding chr15:79603746 chr15:79603747 synonymous SNV . 0 22 hm5C_associated_SNPs_102975 0 0 1 2 79603726 79603747 mRNA hsa-miR-146a TMED3 miRanda miRanda
8180 chr15 79603747 79603747 1 + C G LUSC 79603746 + 79603726 79603766 41 GGAGCAGGGCGTGAAGTTCTCCCTGGATTACCAGGTGAGGC GGAGCAGGGCGTGAAGTTCTCGCTGGATTACCAGGTGAGGC < 41bp 0.507775745317802 0.795403642765582 0.08158517 0.13980046 prediction 0.57525579489556 Functional Gain - TMED3 ENSG00000166557 CDS Human protein_coding chr15:79603746 chr15:79603747 synonymous SNV . 0 22 hm5C_associated_SNPs_102975 0 0 1 2 79603726 79603747 mRNA hsa-miR-146b-5p TMED3 miRanda miRanda
8181 chr16 22826281 22826281 1 + C A LUAD 22826277 + 22826257 22826297 41 TGGGTACCAAGCGGTTGCCCCAAGCCCTCATTGTGGGCGTG TGGGTACCAAGCGGTTGCCCCAAGACCTCATTGTGGGCGTG < 41bp 0.407915424324751 0.787176948208763 0.86880535 0.8461874 prediction 0.574353896417527 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22826277 chr16:22826281 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_103026 0 0 0 1 22826264 22826285 mRNA hsa-miR-296-3p HS3ST2 miRanda miRanda
8182 chr1 162769725 162769725 1 + C A COAD 162769721 + 162769701 162769741 41 GCTTTGAACAGGAACTTCAACCAGCAGGTAAGGCCTGTCTC GCTTTGAACAGGAACTTCAACCAGAAGGTAAGGCCTGTCTC < 41bp 0.392482070677146 0.78648315921903 0.2611969 0.30638403 prediction 0.572966318438059 Functional Gain - HSD17B7 ENSG00000132196 CDS Human protein_coding chr1:162769721 chr1:162769725 nonsynonymous SNV 0.329 0 25 hm5C_associated_SNPs_103111 0 0 1 2 162769707 162769727 mRNA hsa-miR-370 HSD17B7 miRanda miRanda
8183 chr1 162769725 162769725 1 + C A COAD 162769721 + 162769701 162769741 41 GCTTTGAACAGGAACTTCAACCAGCAGGTAAGGCCTGTCTC GCTTTGAACAGGAACTTCAACCAGAAGGTAAGGCCTGTCTC < 41bp 0.392482070677146 0.78648315921903 0.2611969 0.30638403 prediction 0.572966318438059 Functional Gain - HSD17B7 ENSG00000132196 CDS Human protein_coding chr1:162769721 chr1:162769725 nonsynonymous SNV 0.329 0 25 hm5C_associated_SNPs_103111 0 0 1 2 162769711 162769727 mRNA hsa-miR-504 HSD17B7 miRanda miRanda
8184 chr10 124648214 124648214 1 + C A LUAD 124648210 + 124648190 124648230 41 GAGTGACAGGAAAACACCACCAAGCCTGATGAAGGCATTCT GAGTGACAGGAAAACACCACCAAGACTGATGAAGGCATTCT < 41bp 0.419381498841652 0.786458583534183 0.20498186 0.23730397 prediction 0.572917167068367 Functional Gain - LOC399815 ENSG00000255624 ncRNA_exonic Human transcribed_processed_pseudogene chr10:124648210 chr10:124648214 . . 0 25 hm5C_associated_SNPs_103116 0 0 0 1 124648204 124648225 mRNA hsa-miR-205 LOC399815 miRanda miRanda
8185 chr19 55048205 55048205 1 + C A rs560993119 55048201 + 55048181 55048221 41 TTTGACCAGTACCATCTGTTCAGACACGGGGTTGCTCATGG TTTGACCAGTACCATCTGTTCAGAAACGGGGTTGCTCATGG < 41bp 0.399540350811507 0.78627599621068 0.09918222 0.23234579 prediction 0.57255199242136 Functional Gain - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55048201 chr19:55048205 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103137 0 0 0 1 55048188 55048209 mRNA hsa-miR-187 KIR3DX1 miRanda miRanda
8186 chr14 23304015 23304015 1 + C A rs143683198 23304011 + 23303991 23304031 41 AGGTTGCAGTGAGCCAAGGTCACACCATTGCACTCCAACCT AGGTTGCAGTGAGCCAAGGTCACAACATTGCACTCCAACCT < 41bp 0.428251092190554 0.786052576148941 0.45030698 0.56361663 prediction 0.572105152297882 Functional Gain - MRPL52 ENSG00000172590 UTR3 Human protein_coding chr14:23304011 chr14:23304015 . . 0 25 hm5C_associated_SNPs_103152 0 0 1 1 23304004 23304025 mRNA hsa-miR-130a MRPL52 miRanda miRanda
8187 chr19 57157140 57157140 1 + C G rs61749984 57157139 + 57157119 57157159 41 CTGGGAGAAGCCTCCTCATCCCGCCTGCACCAAAGACTGGG CTGGGAGAAGCCTCCTCATCCGGCCTGCACCAAAGACTGGG < 41bp 0.515419454256922 0.801132507812844 0.18279433 0.5107283 prediction 0.571426107111844 Functional Gain - SMIM17 ENSG00000268182 CDS Human protein_coding chr19:57157139 chr19:57157140 synonymous SNV . 0 22 hm5C_associated_SNPs_103189 0 0 0 1 57157134 57157154 mRNA hsa-miR-9 LOC147670 miRanda miRanda
8188 chr1 202991994 202991994 1 + T G CESC 202991991 + 202991971 202992011 41 TTTCCATTTCAGTTTACTATCAATGTGAGCACGGACATGCG TTTCCATTTCAGTTTACTATCAAGGTGAGCACGGACATGCG < 41bp 0.409556296431346 0.785533611287051 0.18052411 0.92251873 prediction 0.571067222574103 Functional Gain - TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202991991 chr1:202991994 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_103205 0 0 1 2 202991983 202991999 mRNA hsa-miR-23a TMEM183A miRanda miRanda
8189 chr1 202991994 202991994 1 + T G CESC 202991991 + 202991971 202992011 41 TTTCCATTTCAGTTTACTATCAATGTGAGCACGGACATGCG TTTCCATTTCAGTTTACTATCAAGGTGAGCACGGACATGCG < 41bp 0.409556296431346 0.785533611287051 0.18052411 0.92251873 prediction 0.571067222574103 Functional Gain - TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202991991 chr1:202991994 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_103205 0 0 1 2 202991983 202991999 mRNA hsa-miR-23b TMEM183A miRanda miRanda
8190 chr1 19952903 19952903 1 + T A rs72959490 19952899 + 19952879 19952919 41 AGGAGCAGGAGCAGTGACTTCACCTGAGAACATCCCAGCGG AGGAGCAGGAGCAGTGACTTCACCAGAGAACATCCCAGCGG < 41bp 0.529243706293035 0.814692041807868 0.307244 0.446818 prediction 0.570896671029665 Functional Gain - MINOS1 ENSG00000270136;ENSG00000173436;ENSG00000270136 UTR5;UTR3 Human other chr1:19952899 chr1:19952903 . . 0 25 hm5C_associated_SNPs_103209 0 0 1 4 19952884 19952905 mRNA hsa-miR-125a-3p C1orf151 miRanda miRanda
8191 chr1 19952903 19952903 1 + T A rs72959490 19952899 + 19952879 19952919 41 AGGAGCAGGAGCAGTGACTTCACCTGAGAACATCCCAGCGG AGGAGCAGGAGCAGTGACTTCACCAGAGAACATCCCAGCGG < 41bp 0.529243706293035 0.814692041807868 0.307244 0.446818 prediction 0.570896671029665 Functional Gain - MINOS1 ENSG00000270136;ENSG00000173436;ENSG00000270136 UTR5;UTR3 Human other chr1:19952899 chr1:19952903 . . 0 25 hm5C_associated_SNPs_103209 0 0 1 4 19952896 19952905 mRNA hsa-miR-125a-3p C1orf151 miRanda miRanda
8192 chr1 19952903 19952903 1 + T A rs72959490 19952899 + 19952879 19952919 41 AGGAGCAGGAGCAGTGACTTCACCTGAGAACATCCCAGCGG AGGAGCAGGAGCAGTGACTTCACCAGAGAACATCCCAGCGG < 41bp 0.529243706293035 0.814692041807868 0.307244 0.446818 prediction 0.570896671029665 Functional Gain - MINOS1 ENSG00000270136;ENSG00000173436;ENSG00000270136 UTR5;UTR3 Human other chr1:19952899 chr1:19952903 . . 0 25 hm5C_associated_SNPs_103209 0 0 1 4 19952890 19952914 mRNA hsa-miR-876-5p C1orf151 miRanda miRanda
8193 chr1 19952903 19952903 1 + T A rs72959490 19952899 + 19952879 19952919 41 AGGAGCAGGAGCAGTGACTTCACCTGAGAACATCCCAGCGG AGGAGCAGGAGCAGTGACTTCACCAGAGAACATCCCAGCGG < 41bp 0.529243706293035 0.814692041807868 0.307244 0.446818 prediction 0.570896671029665 Functional Gain - MINOS1 ENSG00000270136;ENSG00000173436;ENSG00000270136 UTR5;UTR3 Human other chr1:19952899 chr1:19952903 . . 0 25 hm5C_associated_SNPs_103209 0 0 1 4 19952896 19952914 mRNA hsa-miR-876-5p C1orf151 miRanda miRanda
8194 chr3 119331936 119331936 1 + T A LUSC 119331932 + 119331912 119331952 41 GCTTGGATGCTGGAGATGCCCTCTTCGTGGAAGCCATCCAC GCTTGGATGCTGGAGATGCCCTCTACGTGGAAGCCATCCAC < 41bp 0.56662869073122 0.851211296991269 0.0142223835 0.06775963 prediction 0.569165212520096 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119331932 chr3:119331936 nonsynonymous SNV 0.986 5 25 hm5C_associated_SNPs_103284 0 0 0 2 119331927 119331949 mRNA hsa-miR-135a PLA1A miRanda miRanda
8195 chr3 119331936 119331936 1 + T A LUSC 119331932 + 119331912 119331952 41 GCTTGGATGCTGGAGATGCCCTCTTCGTGGAAGCCATCCAC GCTTGGATGCTGGAGATGCCCTCTACGTGGAAGCCATCCAC < 41bp 0.56662869073122 0.851211296991269 0.0142223835 0.06775963 prediction 0.569165212520096 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119331932 chr3:119331936 nonsynonymous SNV 0.986 5 25 hm5C_associated_SNPs_103284 0 0 0 2 119331928 119331949 mRNA hsa-miR-135b PLA1A miRanda miRanda
8196 chr12 125576014 125576014 1 + C G CESC 125576010 + 125575990 125576030 41 AGCACGCTGTCGAGGCGATGCTGGCTGCGGCAAGCATTGGT AGCACGCTGTCGAGGCGATGCTGGGTGCGGCAAGCATTGGT < 41bp 0.508017784110919 0.792562936462474 0.56224304 0.8937398 prediction 0.569090304703111 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125576010 chr12:125576014 nonsynonymous SNV 0.526 2 25 hm5C_associated_SNPs_103285 0 0 1 1 125575999 125576020 mRNA hsa-miR-615-3p AACS miRanda miRanda
8197 chr8 146278737 146278737 1 + C G LUAD 146278736 + 146278716 146278756 41 GCAGCAAAAGAACGCCCTTGCCCCGGAAGAGGCAGCTGATG GCAGCAAAAGAACGCCCTTGCGCCGGAAGAGGCAGCTGATG < 41bp 0.536618959544957 0.821148574730979 0.15199766 0.49840397 prediction 0.569059230372044 Functional Gain - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278736 chr8:146278737 nonsynonymous SNV 0.417 3 22 hm5C_associated_SNPs_103287 0 0 1 1 146278732 146278753 mRNA hsa-miR-22 C8orf33 miRanda miRanda
8198 chr5 128797410 128797410 1 + C A BRCA 128797406 + 128797386 128797426 41 ACACCGGAGCTGTGCTGCGGCACCCTGGCTCGCTGGCTTCT ACACCGGAGCTGTGCTGCGGCACCATGGCTCGCTGGCTTCT < 41bp 0.373991632573963 0.784350762766591 0.34496984 0.5896954 prediction 0.568701525533182 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128797406 chr5:128797410 nonsynonymous SNV 0.582 2 25 hm5C_associated_SNPs_103309 0 0 0 1 128797400 128797424 mRNA hsa-miR-503 ADAMTS19 miRanda miRanda
8199 chr16 55539807 55539807 1 + C G rs562314074 55539803 + 55539783 55539823 41 GCATGGCCAGGTGGCCACTCCAGACCCCTGGCTTTTCACTG GCATGGCCAGGTGGCCACTCCAGAGCCCTGGCTTTTCACTG < 41bp 0.510190227370817 0.794394236858656 0.5010721 0.85401344 prediction 0.568408018975679 Functional Gain - MMP2 ENSG00000087245 UTR3 Human protein_coding chr16:55539803 chr16:55539807 . . 0 25 hm5C_associated_SNPs_103323 1 0 0 1 55539805 55539827 mRNA hsa-miR-214 MMP2 miRanda miRanda
8200 chr5 176491739 176491739 1 + C G rs144050595 176491735 + 176491715 176491755 41 AGGCAGGATTGGGCCACAGACAGCCTCTCATTGGTCCGGGC AGGCAGGATTGGGCCACAGACAGCGTCTCATTGGTCCGGGC < 41bp 0.504104473998122 0.788055341651164 0.35675323 0.6252111 prediction 0.567901735306082 Functional Gain - ZNF346 ENSG00000113761 UTR3 Human protein_coding chr5:176491735 chr5:176491739 . . 0 25 hm5C_associated_SNPs_103351 0 0 0 1 176491720 176491742 mRNA hsa-miR-485-5p ZNF346 miRanda miRanda
8201 chr11 70007770 70007770 1 + T C rs2186797 70007768 + 70007748 70007788 41 AGCTTTGAGGAGAGGCTGATCTTCAAGGCTTTCCTGCTGAA AGCTTTGAGGAGAGGCTGATCTCCAAGGCTTTCCTGCTGAA < 41bp 0.490200050771282 0.783856751003728 0.13022497 0.9659138 prediction 0.567713502007457 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70007768 chr11:70007770 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_103364 0 0 0 1 70007767 70007787 mRNA hsa-miR-214 ANO1 miRanda miRanda
8202 chr19 57804114 57804114 1 + T G rs138081768 57804111 + 57804091 57804131 41 CCTCATCCCCTTTATTTTCCCTGTGTATACATTCACTGCTG CCTCATCCCCTTTATTTTCCCTGGGTATACATTCACTGCTG < 41bp 0.435573061909982 0.783850242775808 0.10022086 0.36706722 prediction 0.567700485551616 Functional Gain - ZNF460 ENSG00000197714 UTR3 Human protein_coding chr19:57804111 chr19:57804114 . . 0 24 hm5C_associated_SNPs_103366 0 0 1 2 57804097 57804119 mRNA hsa-miR-381 ZNF460 miRanda miRanda
8203 chr19 57804114 57804114 1 + T G rs138081768 57804111 + 57804091 57804131 41 CCTCATCCCCTTTATTTTCCCTGTGTATACATTCACTGCTG CCTCATCCCCTTTATTTTCCCTGGGTATACATTCACTGCTG < 41bp 0.435573061909982 0.783850242775808 0.10022086 0.36706722 prediction 0.567700485551616 Functional Gain - ZNF460 ENSG00000197714 UTR3 Human protein_coding chr19:57804111 chr19:57804114 . . 0 24 hm5C_associated_SNPs_103366 0 0 1 2 57804097 57804119 mRNA hsa-miR-300 ZNF460 miRanda miRanda
8204 chrX 19377810 19377810 1 + C G rs111666443 19377809 + 19377789 19377829 41 GTTATACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTG GTTATACCTTCAGGGGGCTACGAGACAGTGTTCTCAACTTG < 41bp 0.52908525199579 0.812818730280688 0.08917281 0.26490992 prediction 0.567466956569795 Functional Gain - PDHA1 ENSG00000131828 UTR3 Human protein_coding chrX:19377809 chrX:19377810 . . 0 22 hm5C_associated_SNPs_103376 0 0 1 2 19377800 19377821 mRNA hsa-miR-141 PDHA1 miRanda miRanda
8205 chrX 19377810 19377810 1 + C G rs111666443 19377809 + 19377789 19377829 41 GTTATACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTG GTTATACCTTCAGGGGGCTACGAGACAGTGTTCTCAACTTG < 41bp 0.52908525199579 0.812818730280688 0.08917281 0.26490992 prediction 0.567466956569795 Functional Gain - PDHA1 ENSG00000131828 UTR3 Human protein_coding chrX:19377809 chrX:19377810 . . 0 22 hm5C_associated_SNPs_103376 0 0 1 2 19377800 19377821 mRNA hsa-miR-200a PDHA1 miRanda miRanda
8206 chr6 50682990 50682990 1 + C G OV 50682989 + 50682969 50683009 41 CTCCACTAACCACCAGTACACCCCGCTCCACCACCAGTCCT CTCCACTAACCACCAGTACACGCCGCTCCACCACCAGTCCT < 41bp 0.476142381124379 0.783475937601266 0.06849539 0.123688966 prediction 0.566951875202531 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50682989 chr6:50682990 synonymous SNV . 0 22 hm5C_associated_SNPs_103407 0 0 0 1 50682990 50683013 mRNA hsa-miR-7 TFAP2D miRanda miRanda
8207 chr22 24837528 24837528 1 + T A rs200750556 24837524 + 24837504 24837544 41 TTCTGGTTGGCTTGACCAGTCACGTTGGGAGAAGAGAGAGA TTCTGGTTGGCTTGACCAGTCACGATGGGAGAAGAGAGAGA < 41bp 0.512000926953059 0.795455386142721 0.35035527 0.32321107 prediction 0.566908918379324 Functional Gain - SPECC1L-ADORA2A ENSG00000178803 ncRNA_intronic Human antisense chr22:24837524 chr22:24837528 . . 0 25 hm5C_associated_SNPs_103408 0 0 0 1 24837514 24837535 mRNA hsa-miR-150 ADORA2A miRanda miRanda
8208 chr19 20959133 20959133 1 + C G rs150438174 20959132 + 20959112 20959152 41 CTCTCCCTGCAGCTGGAGCTCCAGGTCGTCTGTTCACTGCT CTCTCCCTGCAGCTGGAGCTCGAGGTCGTCTGTTCACTGCT < 41bp 0.50515737007157 0.788413158639924 0.79676616 0.95060945 prediction 0.566511577136708 Functional Gain - ZNF626;ZNF85 ENSG00000160229 UTR5 Human protein_coding chr19:20959132 chr19:20959133 . . 0 22 hm5C_associated_SNPs_103430 0 0 0 1 20959118 20959139 mRNA hsa-miR-490-3p ZNF66 miRanda miRanda
8209 chr12 53514576 53514576 1 + T G UCEC 53514574 + 53514554 53514594 41 TGTCCCCAACCACCAGGCATCTTCATGCTGCTGCTCATCTT TGTCCCCAACCACCAGGCATCTGCATGCTGCTGCTCATCTT < 41bp 0.448495268095076 0.782322319153504 0.13614243 0.123702526 prediction 0.564644638307009 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53514574 chr12:53514576 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_103540 0 0 0 8 53514570 53514589 mRNA hsa-miR-15a SOAT2 miRanda miRanda
8210 chr12 53514576 53514576 1 + T G UCEC 53514574 + 53514554 53514594 41 TGTCCCCAACCACCAGGCATCTTCATGCTGCTGCTCATCTT TGTCCCCAACCACCAGGCATCTGCATGCTGCTGCTCATCTT < 41bp 0.448495268095076 0.782322319153504 0.13614243 0.123702526 prediction 0.564644638307009 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53514574 chr12:53514576 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_103540 0 0 0 8 53514570 53514589 mRNA hsa-miR-16 SOAT2 miRanda miRanda
8211 chr12 53514576 53514576 1 + T G UCEC 53514574 + 53514554 53514594 41 TGTCCCCAACCACCAGGCATCTTCATGCTGCTGCTCATCTT TGTCCCCAACCACCAGGCATCTGCATGCTGCTGCTCATCTT < 41bp 0.448495268095076 0.782322319153504 0.13614243 0.123702526 prediction 0.564644638307009 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53514574 chr12:53514576 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_103540 0 0 0 8 53514570 53514585 mRNA hsa-miR-103 SOAT2 miRanda miRanda
8212 chr12 53514576 53514576 1 + T G UCEC 53514574 + 53514554 53514594 41 TGTCCCCAACCACCAGGCATCTTCATGCTGCTGCTCATCTT TGTCCCCAACCACCAGGCATCTGCATGCTGCTGCTCATCTT < 41bp 0.448495268095076 0.782322319153504 0.13614243 0.123702526 prediction 0.564644638307009 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53514574 chr12:53514576 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_103540 0 0 0 8 53514570 53514585 mRNA hsa-miR-107 SOAT2 miRanda miRanda
8213 chr12 53514576 53514576 1 + T G UCEC 53514574 + 53514554 53514594 41 TGTCCCCAACCACCAGGCATCTTCATGCTGCTGCTCATCTT TGTCCCCAACCACCAGGCATCTGCATGCTGCTGCTCATCTT < 41bp 0.448495268095076 0.782322319153504 0.13614243 0.123702526 prediction 0.564644638307009 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53514574 chr12:53514576 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_103540 0 0 0 8 53514570 53514589 mRNA hsa-miR-15b SOAT2 miRanda miRanda
8214 chr12 53514576 53514576 1 + T G UCEC 53514574 + 53514554 53514594 41 TGTCCCCAACCACCAGGCATCTTCATGCTGCTGCTCATCTT TGTCCCCAACCACCAGGCATCTGCATGCTGCTGCTCATCTT < 41bp 0.448495268095076 0.782322319153504 0.13614243 0.123702526 prediction 0.564644638307009 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53514574 chr12:53514576 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_103540 0 0 0 8 53514570 53514589 mRNA hsa-miR-195 SOAT2 miRanda miRanda
8215 chr12 53514576 53514576 1 + T G UCEC 53514574 + 53514554 53514594 41 TGTCCCCAACCACCAGGCATCTTCATGCTGCTGCTCATCTT TGTCCCCAACCACCAGGCATCTGCATGCTGCTGCTCATCTT < 41bp 0.448495268095076 0.782322319153504 0.13614243 0.123702526 prediction 0.564644638307009 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53514574 chr12:53514576 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_103540 0 0 0 8 53514570 53514589 mRNA hsa-miR-424 SOAT2 miRanda miRanda
8216 chr12 53514576 53514576 1 + T G UCEC 53514574 + 53514554 53514594 41 TGTCCCCAACCACCAGGCATCTTCATGCTGCTGCTCATCTT TGTCCCCAACCACCAGGCATCTGCATGCTGCTGCTCATCTT < 41bp 0.448495268095076 0.782322319153504 0.13614243 0.123702526 prediction 0.564644638307009 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53514574 chr12:53514576 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_103540 0 0 0 8 53514570 53514589 mRNA hsa-miR-497 SOAT2 miRanda miRanda
8217 chr8 10555351 10555351 1 + T A LUAD 10555347 + 10555327 10555367 41 GCCGAGGGCATGGACAGGGACTTGTGGATCCACGAGCAGCA GCCGAGGGCATGGACAGGGACTTGAGGATCCACGAGCAGCA < 41bp 0.470976172608426 0.781380706889089 0.14385825 0.23345685 prediction 0.562761413778178 Functional Gain - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10555347 chr8:10555351 nonsynonymous SNV 0.018 4 25 hm5C_associated_SNPs_103643 0 0 0 1 10555348 10555370 mRNA hsa-miR-370 C8orf74 miRanda miRanda
8218 chr1 149755799 149755799 1 + T A LIHC 149755795 + 149755775 149755815 41 CAGGGCGAAGTGACCCCATACAGCTGGAAATCCACAGAGGT CAGGGCGAAGTGACCCCATACAGCAGGAAATCCACAGAGGT < 41bp 0.548731037060439 0.830057087171938 0.4623405 0.4308265 prediction 0.562652100222999 Functional Gain - FCGR1A ENSG00000150337 CDS Human protein_coding chr1:149755795 chr1:149755799 nonsynonymous SNV 0.907 3 25 hm5C_associated_SNPs_103649 0 0 0 1 149755787 149755808 mRNA hsa-miR-876-5p FCGR1A miRanda miRanda
8219 chr14 73637738 73637738 1 + C G rs139863395 73637737 + 73637717 73637757 41 TAAGTCAGTCAGCTTTTATACCCGGAAGGATGGGCAGCTGT TAAGTCAGTCAGCTTTTATACGCGGAAGGATGGGCAGCTGT < 41bp 0.5194986096968 0.800740836352858 0.09214467 0.28384042 prediction 0.562484453312116 Functional Gain - PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637737 chr14:73637738 synonymous SNV . 0 22 hm5C_associated_SNPs_103659 0 0 1 1 73637735 73637755 mRNA hsa-miR-22 PSEN1 miRanda miRanda
8220 chr11 61724453 61724453 1 + C A rs74653691 61724449 + 61724429 61724469 41 GGTCGAATCCGGGACCCTATCCTGCTCCAGAGCCTGCTGAA GGTCGAATCCGGGACCCTATCCTGATCCAGAGCCTGCTGAA < 41bp 0.399811766823112 0.781228541491303 0.030604959 0.3380943 prediction 0.562457082982607 Functional Gain - BEST1 ENSG00000167995 CDS Human protein_coding chr11:61724449 chr11:61724453 nonsynonymous SNV 0.979 5 25 hm5C_associated_SNPs_103661 5 0 0 1 61724445 61724468 mRNA hsa-miR-214 BEST1 miRanda miRanda
8221 chr7 12668813 12668813 1 + T G ESCA 12668810 + 12668790 12668830 41 GTGGTGACTGCTACATCATACTCTACACCTATCCCAGAGGA GTGGTGACTGCTACATCATACTCGACACCTATCCCAGAGGA < 41bp 0.412571747949139 0.781161697647874 0.50074863 0.34476954 prediction 0.562323395295748 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12668810 chr7:12668813 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_103672 0 0 1 2 12668810 12668829 mRNA hsa-miR-330-5p SCIN miRanda miRanda
8222 chr7 12668813 12668813 1 + T G ESCA 12668810 + 12668790 12668830 41 GTGGTGACTGCTACATCATACTCTACACCTATCCCAGAGGA GTGGTGACTGCTACATCATACTCGACACCTATCCCAGAGGA < 41bp 0.412571747949139 0.781161697647874 0.50074863 0.34476954 prediction 0.562323395295748 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12668810 chr7:12668813 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_103672 0 0 1 2 12668810 12668829 mRNA hsa-miR-326 SCIN miRanda miRanda
8223 chr1 160144478 160144478 1 + C A LUSC 160144474 + 160144454 160144494 41 CTGGCTCTGACGTCTCTAAGCAGGCAGCCGACATGATCCTG CTGGCTCTGACGTCTCTAAGCAGGAAGCCGACATGATCCTG < 41bp 0.626351789239627 0.907448963001643 0.838632 0.74766 prediction 0.562194347524032 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160144474 chr1:160144478 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_103675 0 0 0 1 160144477 160144498 mRNA hsa-miR-214 ATP1A4 miRanda miRanda
8224 chr11 65617417 65617417 1 + C G rs370896235 65617416 + 65617396 65617436 41 CCTCCCTCACTTCGCCCAGACCGAGTTCTCAGTCGTGCGGC CCTCCCTCACTTCGCCCAGACGGAGTTCTCAGTCGTGCGGC < 41bp 0.465023051281918 0.780759903748271 0.2941644 0.8270347 prediction 0.561519807496541 Functional Gain - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65617416 chr11:65617417 synonymous SNV . 0 22 hm5C_associated_SNPs_103715 0 0 0 2 65617405 65617426 mRNA hsa-miR-146a SNX32 miRanda miRanda
8225 chr11 65617417 65617417 1 + C G rs370896235 65617416 + 65617396 65617436 41 CCTCCCTCACTTCGCCCAGACCGAGTTCTCAGTCGTGCGGC CCTCCCTCACTTCGCCCAGACGGAGTTCTCAGTCGTGCGGC < 41bp 0.465023051281918 0.780759903748271 0.2941644 0.8270347 prediction 0.561519807496541 Functional Gain - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65617416 chr11:65617417 synonymous SNV . 0 22 hm5C_associated_SNPs_103715 0 0 0 2 65617405 65617426 mRNA hsa-miR-146b-5p SNX32 miRanda miRanda
8226 chr4 99982392 99982392 1 + T G LUSC 99982390 + 99982370 99982410 41 GCTCAGTTTGAGCACACCCTCCTGGTCACAGACACTGGCTG GCTCAGTTTGAGCACACCCTCCGGGTCACAGACACTGGCTG < 41bp 0.45113300781586 0.780708104177716 0.06584358 0.6500029 prediction 0.561416208355432 Functional Gain - METAP1 ENSG00000164024 CDS Human protein_coding chr4:99982390 chr4:99982392 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_103722 0 0 1 2 99982385 99982408 mRNA hsa-miR-199a-5p METAP1 miRanda miRanda
8227 chr4 99982392 99982392 1 + T G LUSC 99982390 + 99982370 99982410 41 GCTCAGTTTGAGCACACCCTCCTGGTCACAGACACTGGCTG GCTCAGTTTGAGCACACCCTCCGGGTCACAGACACTGGCTG < 41bp 0.45113300781586 0.780708104177716 0.06584358 0.6500029 prediction 0.561416208355432 Functional Gain - METAP1 ENSG00000164024 CDS Human protein_coding chr4:99982390 chr4:99982392 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_103722 0 0 1 2 99982385 99982408 mRNA hsa-miR-199b-5p METAP1 miRanda miRanda
8228 chr2 220112473 220112473 1 + T A UCS 220112469 + 220112449 220112489 41 CTGTGTCATCGATGAGCGGACTGATGTCTGGGTGAGGAGCA CTGTGTCATCGATGAGCGGACTGAAGTCTGGGTGAGGAGCA < 41bp 0.469845657896368 0.78063194671405 0.1267032 0.1724278 prediction 0.561263893428099 Functional Gain - STK16 ENSG00000115661 CDS Human protein_coding chr2:220112469 chr2:220112473 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103731 0 0 1 1 220112458 220112480 mRNA hsa-miR-338-3p STK16 miRanda miRanda
8229 chr16 678264 678264 1 + C G rs11548189 678260 + 678240 678280 41 AGGGGAGAAAGGAGGTGCACCTGGCAGCCCACATTTTTGTT AGGGGAGAAAGGAGGTGCACCTGGGAGCCCACATTTTTGTT < 41bp 0.506652172063847 0.787224306606104 0.426783 0.67292976 prediction 0.561144269084515 Functional Gain - RAB40C ENSG00000197562 UTR3 Human protein_coding chr16:678260 chr16:678264 . . 0 25 hm5C_associated_SNPs_103744 0 0 1 1 678253 678274 mRNA hsa-miR-299-3p RAB40C miRanda miRanda
8230 chr21 46021677 46021677 1 + T G rs370520219 46021675 + 46021655 46021695 41 CTCCTTAAGATCATCCAAAGCCTGAGTGCTCACTGCCACCT CTCCTTAAGATCATCCAAAGCCGGAGTGCTCACTGCCACCT < 41bp 0.550866045387602 0.831404368972403 0.113711655 0.85619843 prediction 0.561076647169603 Functional Gain - KRTAP10-7 ENSG00000205441 UTR3 Human other chr21:46021675 chr21:46021677 . . 0 23 hm5C_associated_SNPs_103749 0 0 0 4 46021671 46021692 mRNA hsa-miR-34a KRTAP10-7 miRanda miRanda
8231 chr21 46021677 46021677 1 + T G rs370520219 46021675 + 46021655 46021695 41 CTCCTTAAGATCATCCAAAGCCTGAGTGCTCACTGCCACCT CTCCTTAAGATCATCCAAAGCCGGAGTGCTCACTGCCACCT < 41bp 0.550866045387602 0.831404368972403 0.113711655 0.85619843 prediction 0.561076647169603 Functional Gain - KRTAP10-7 ENSG00000205441 UTR3 Human other chr21:46021675 chr21:46021677 . . 0 23 hm5C_associated_SNPs_103749 0 0 0 4 46021667 46021692 mRNA hsa-miR-34c-5p KRTAP10-7 miRanda miRanda
8232 chr21 46021677 46021677 1 + T G rs370520219 46021675 + 46021655 46021695 41 CTCCTTAAGATCATCCAAAGCCTGAGTGCTCACTGCCACCT CTCCTTAAGATCATCCAAAGCCGGAGTGCTCACTGCCACCT < 41bp 0.550866045387602 0.831404368972403 0.113711655 0.85619843 prediction 0.561076647169603 Functional Gain - KRTAP10-7 ENSG00000205441 UTR3 Human other chr21:46021675 chr21:46021677 . . 0 23 hm5C_associated_SNPs_103749 0 0 0 4 46021670 46021692 mRNA hsa-miR-449a KRTAP10-7 miRanda miRanda
8233 chr21 46021677 46021677 1 + T G rs370520219 46021675 + 46021655 46021695 41 CTCCTTAAGATCATCCAAAGCCTGAGTGCTCACTGCCACCT CTCCTTAAGATCATCCAAAGCCGGAGTGCTCACTGCCACCT < 41bp 0.550866045387602 0.831404368972403 0.113711655 0.85619843 prediction 0.561076647169603 Functional Gain - KRTAP10-7 ENSG00000205441 UTR3 Human other chr21:46021675 chr21:46021677 . . 0 23 hm5C_associated_SNPs_103749 0 0 0 4 46021670 46021692 mRNA hsa-miR-449b KRTAP10-7 miRanda miRanda
8234 chrX 40450585 40450585 1 + C G rs9014 40450584 + 40450564 40450604 41 GTGAACAAACTGGCTCTACCCCCAGGCAGTGTCATTTCGTA GTGAACAAACTGGCTCTACCCGCAGGCAGTGTCATTTCGTA < 41bp 0.510456176507021 0.790584073924963 0.27540165 0.6525952 prediction 0.560255794835884 Functional Gain - ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40450584 chrX:40450585 nonsynonymous SNV 0.910 0 22 hm5C_associated_SNPs_103789 1 0 1 1 40450577 40450599 mRNA hsa-miR-425 ATP6AP2 miRanda miRanda
8235 chr15 102515245 102515245 1 + C G rs548605852 102515244 + 102515224 102515264 41 GCTCCCAGGGAAGTGGTTGACCCCTCCGGTGGCCGGGCCAC GCTCCCAGGGAAGTGGTTGACGCCTCCGGTGGCCGGGCCAC < 41bp 0.503871377978211 0.783665016774619 0.15509889 0.32535926 prediction 0.559587277592815 Functional Gain - WASH3P ENSG00000185596 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102515244 chr15:102515245 . . 0 22 hm5C_associated_SNPs_103822 0 0 1 3 102515222 102515245 mRNA hsa-miR-505 WASH3P miRanda miRanda
8236 chr15 102515245 102515245 1 + C G rs548605852 102515244 + 102515224 102515264 41 GCTCCCAGGGAAGTGGTTGACCCCTCCGGTGGCCGGGCCAC GCTCCCAGGGAAGTGGTTGACGCCTCCGGTGGCCGGGCCAC < 41bp 0.503871377978211 0.783665016774619 0.15509889 0.32535926 prediction 0.559587277592815 Functional Gain - WASH3P ENSG00000185596 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102515244 chr15:102515245 . . 0 22 hm5C_associated_SNPs_103822 0 0 1 3 102515222 102515245 mRNA hsa-miR-505 WASH2P miRanda miRanda
8237 chr15 102515245 102515245 1 + C G rs548605852 102515244 + 102515224 102515264 41 GCTCCCAGGGAAGTGGTTGACCCCTCCGGTGGCCGGGCCAC GCTCCCAGGGAAGTGGTTGACGCCTCCGGTGGCCGGGCCAC < 41bp 0.503871377978211 0.783665016774619 0.15509889 0.32535926 prediction 0.559587277592815 Functional Gain - WASH3P ENSG00000185596 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102515244 chr15:102515245 . . 0 22 hm5C_associated_SNPs_103822 0 0 1 3 102515222 102515245 mRNA hsa-miR-505 WASH7P miRanda miRanda
8238 chr1 203274801 203274801 1 + C A PAAD 203274797 + 203274777 203274817 41 GCCGCCGTGGGCTTCCTCTCCAGCCTCCTGAGGACCCGGGG GCCGCCGTGGGCTTCCTCTCCAGCATCCTGAGGACCCGGGG < 41bp 0.625833849821886 0.905003588756997 0.53911585 0.1756489 prediction 0.558339477870222 Functional Gain - BTG2 ENSG00000159388 CDS Human protein_coding chr1:203274797 chr1:203274801 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_103876 0 0 1 1 203274783 203274804 mRNA hsa-miR-485-5p BTG2 miRanda miRanda
8239 chr7 56564250 56564250 1 + C A LUAD 56564246 + 56564226 56564266 41 TTACCTCCACCTCCAGGGCACAGACAGGGGGAGCTCTGTCT TTACCTCCACCTCCAGGGCACAGAAAGGGGGAGCTCTGTCT < 41bp 0.429787051566405 0.778817519689017 0.04675868 0.17961603 prediction 0.557635039378034 Functional Gain - DKFZp434L192 ENSG00000261275 ncRNA_exonic Human lincRNA chr7:56564246 chr7:56564250 . . 0 25 hm5C_associated_SNPs_103917 0 0 0 1 56564230 56564255 mRNA hsa-miR-339-5p DKFZp434L192 miRanda miRanda
8240 chr1 153941929 153941929 1 + C G PRAD 153941928 + 153941908 153941948 41 GCCCCAGTGCCCTGTACAACCCTGGTGAGTCTTGGTGTCAG GCCCCAGTGCCCTGTACAACCGTGGTGAGTCTTGGTGTCAG < 41bp 0.543341347742988 0.821989948737358 0.29748076 0.86985344 prediction 0.557297201988741 Functional Gain - CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153941928 chr1:153941929 nonsynonymous SNV 0.832 0 22 hm5C_associated_SNPs_103939 0 0 0 1 153941911 153941931 mRNA hsa-miR-296-3p CREB3L4 miRanda miRanda
8241 chr15 65218320 65218320 1 + C G rs74528237 65218316 + 65218296 65218336 41 AAAAAGGCCATGTGCCTGTGCTGGCGTTCATAATGGAGGAC AAAAAGGCCATGTGCCTGTGCTGGGGTTCATAATGGAGGAC < 41bp 0.495302293409329 0.778435583229876 0.3519029 0.6433914 prediction 0.556871166459753 Functional Gain - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65218316 chr15:65218320 nonsynonymous SNV 0.951 1 25 hm5C_associated_SNPs_103968 0 0 0 1 65218311 65218334 mRNA hsa-miR-136 ANKDD1A miRanda miRanda
8242 chr1 171308678 171308678 1 + C A PAAD 171308674 + 171308654 171308694 41 TTTCTTATAACCGTGCCAATCGAGCTGTTGCAATTCTTTGT TTTCTTATAACCGTGCCAATCGAGATGTTGCAATTCTTTGT < 41bp 0.43102619799394 0.778308695100727 0.82171714 0.8593012 prediction 0.556617390201454 Functional Gain - TOP1P1 ENSG00000076258 intronic Human protein_coding chr1:171308674 chr1:171308678 . . 0 25 hm5C_associated_SNPs_103984 0 0 0 2 171308661 171308683 mRNA hsa-miR-132 TOP1P1 miRanda miRanda
8243 chr1 171308678 171308678 1 + C A PAAD 171308674 + 171308654 171308694 41 TTTCTTATAACCGTGCCAATCGAGCTGTTGCAATTCTTTGT TTTCTTATAACCGTGCCAATCGAGATGTTGCAATTCTTTGT < 41bp 0.43102619799394 0.778308695100727 0.82171714 0.8593012 prediction 0.556617390201454 Functional Gain - TOP1P1 ENSG00000076258 intronic Human protein_coding chr1:171308674 chr1:171308678 . . 0 25 hm5C_associated_SNPs_103984 0 0 0 2 171308672 171308693 mRNA hsa-miR-186 TOP1P1 miRanda miRanda
8244 chr2 24236244 24236244 1 + C A UCEC 24236240 + 24236220 24236260 41 CCAGATAGCCTCCAGCGCCACAGCCTTTTACCTGCAGCTTT CCAGATAGCCTCCAGCGCCACAGCATTTTACCTGCAGCTTT < 41bp 0.371322196129653 0.778085113437463 0.14569336 0.24302089 prediction 0.556170226874926 Functional Gain - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24236240 chr2:24236244 synonymous SNV . 0 25 hm5C_associated_SNPs_104011 0 0 0 4 24236239 24236261 mRNA hsa-miR-320a MFSD2B miRanda miRanda
8245 chr2 24236244 24236244 1 + C A UCEC 24236240 + 24236220 24236260 41 CCAGATAGCCTCCAGCGCCACAGCCTTTTACCTGCAGCTTT CCAGATAGCCTCCAGCGCCACAGCATTTTACCTGCAGCTTT < 41bp 0.371322196129653 0.778085113437463 0.14569336 0.24302089 prediction 0.556170226874926 Functional Gain - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24236240 chr2:24236244 synonymous SNV . 0 25 hm5C_associated_SNPs_104011 0 0 0 4 24236239 24236261 mRNA hsa-miR-320b MFSD2B miRanda miRanda
8246 chr2 24236244 24236244 1 + C A UCEC 24236240 + 24236220 24236260 41 CCAGATAGCCTCCAGCGCCACAGCCTTTTACCTGCAGCTTT CCAGATAGCCTCCAGCGCCACAGCATTTTACCTGCAGCTTT < 41bp 0.371322196129653 0.778085113437463 0.14569336 0.24302089 prediction 0.556170226874926 Functional Gain - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24236240 chr2:24236244 synonymous SNV . 0 25 hm5C_associated_SNPs_104011 0 0 0 4 24236241 24236261 mRNA hsa-miR-320c MFSD2B miRanda miRanda
8247 chr2 24236244 24236244 1 + C A UCEC 24236240 + 24236220 24236260 41 CCAGATAGCCTCCAGCGCCACAGCCTTTTACCTGCAGCTTT CCAGATAGCCTCCAGCGCCACAGCATTTTACCTGCAGCTTT < 41bp 0.371322196129653 0.778085113437463 0.14569336 0.24302089 prediction 0.556170226874926 Functional Gain - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24236240 chr2:24236244 synonymous SNV . 0 25 hm5C_associated_SNPs_104011 0 0 0 4 24236242 24236261 mRNA hsa-miR-320d MFSD2B miRanda miRanda
8248 chr4 151153909 151153909 1 + T A LUSC 151153905 + 151153885 151153925 41 GATGGCAGTGCCATGGTGTACAACTTAGCCAATGCCCTCAG GATGGCAGTGCCATGGTGTACAACATAGCCAATGCCCTCAG < 41bp 0.455928833246755 0.777946919766977 0.14583483 0.25687003 prediction 0.555893839533954 Functional Gain - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151153905 chr4:151153909 nonsynonymous SNV 0.957 4 25 hm5C_associated_SNPs_104027 0 0 1 1 151153889 151153911 mRNA hsa-miR-382 DCLK2 miRanda miRanda
8249 chr11 3846320 3846320 1 + C A UCEC 3846316 + 3846296 3846336 41 TCATCTCCTTCTTCTCGGCGCTGGCTGTCTACTTTCGGCAC TCATCTCCTTCTTCTCGGCGCTGGATGTCTACTTTCGGCAC < 41bp 0.411066250886328 0.777933785196004 0.02125755 0.04070744 prediction 0.555867570392009 Functional Gain - PGAP2 ENSG00000148985 CDS Human protein_coding chr11:3846316 chr11:3846320 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_104030 0 0 1 1 3846310 3846329 mRNA hsa-miR-411 PGAP2 miRanda miRanda
8250 chr8 9190682 9190682 1 + C G rs17149803 9190681 + 9190661 9190701 41 TATCCTACAAGAAGTAGTGGCCAGGTTGGACTTTCTGATAA TATCCTACAAGAAGTAGTGGCGAGGTTGGACTTTCTGATAA < 41bp 0.506824776200401 0.784531189355223 0.19538832 0.37878415 prediction 0.555412826309645 Functional Gain - LOC157273 ENSG00000254235 ncRNA_exonic Human lincRNA chr8:9190681 chr8:9190682 . . 0 22 hm5C_associated_SNPs_104048 0 0 0 1 9190680 9190701 mRNA hsa-miR-361-5p LOC157273 miRanda miRanda
8251 chr2 74743535 74743535 1 + C A rs140437302 74743531 + 74743511 74743551 41 TCCCGCCATTTTTCACTTCACTGCCGTTACGCCCTCGCTGG TCCCGCCATTTTTCACTTCACTGCAGTTACGCCCTCGCTGG < 41bp 0.614450492104087 0.892127533089608 0.08475003 0.15185753 prediction 0.555354081971043 Functional Gain - TLX2 ENSG00000115297 UTR3 Human protein_coding chr2:74743531 chr2:74743535 . 0.000 0 25 hm5C_associated_SNPs_104056 0 0 0 4 74743515 74743536 mRNA hsa-miR-34a TLX2 miRanda miRanda
8252 chr2 74743535 74743535 1 + C A rs140437302 74743531 + 74743511 74743551 41 TCCCGCCATTTTTCACTTCACTGCCGTTACGCCCTCGCTGG TCCCGCCATTTTTCACTTCACTGCAGTTACGCCCTCGCTGG < 41bp 0.614450492104087 0.892127533089608 0.08475003 0.15185753 prediction 0.555354081971043 Functional Gain - TLX2 ENSG00000115297 UTR3 Human protein_coding chr2:74743531 chr2:74743535 . 0.000 0 25 hm5C_associated_SNPs_104056 0 0 0 4 74743514 74743536 mRNA hsa-miR-34c-5p TLX2 miRanda miRanda
8253 chr2 74743535 74743535 1 + C A rs140437302 74743531 + 74743511 74743551 41 TCCCGCCATTTTTCACTTCACTGCCGTTACGCCCTCGCTGG TCCCGCCATTTTTCACTTCACTGCAGTTACGCCCTCGCTGG < 41bp 0.614450492104087 0.892127533089608 0.08475003 0.15185753 prediction 0.555354081971043 Functional Gain - TLX2 ENSG00000115297 UTR3 Human protein_coding chr2:74743531 chr2:74743535 . 0.000 0 25 hm5C_associated_SNPs_104056 0 0 0 4 74743515 74743536 mRNA hsa-miR-449a TLX2 miRanda miRanda
8254 chr2 74743535 74743535 1 + C A rs140437302 74743531 + 74743511 74743551 41 TCCCGCCATTTTTCACTTCACTGCCGTTACGCCCTCGCTGG TCCCGCCATTTTTCACTTCACTGCAGTTACGCCCTCGCTGG < 41bp 0.614450492104087 0.892127533089608 0.08475003 0.15185753 prediction 0.555354081971043 Functional Gain - TLX2 ENSG00000115297 UTR3 Human protein_coding chr2:74743531 chr2:74743535 . 0.000 0 25 hm5C_associated_SNPs_104056 0 0 0 4 74743515 74743536 mRNA hsa-miR-449b TLX2 miRanda miRanda
8255 chr7 99017041 99017041 1 - G T LUSC 99017045 - 99017025 99017065 41 CTCAGCCAGAGCAGCCACGACAGCCACAGTGTGTGCACTCG CTCAGCCAGAGCAGCCACGACAGCAACAGTGTGTGCACTCG < 41bp 0.364093166715856 0.777671939649005 0.2758087 0.2808497 prediction 0.55534387929801 Functional Gain - BUD31 ENSG00000106245 CDS Human protein_coding chr7:99017045 chr7:99017041 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_104057 0 0 1 1 99017026 99017049 mRNA hsa-miR-454 PTCD1 miRanda miRanda
8256 chr20 57019226 57019226 1 + C A LAML 57019222 + 57019202 57019242 41 GGGAAGGAAGAAGGCCTTAGCACCCGGCTCTTGGCTCTGGT GGGAAGGAAGAAGGCCTTAGCACCAGGCTCTTGGCTCTGGT < 41bp 0.378514206171239 0.777334345443751 0.28442514 0.33461416 prediction 0.554668690887501 Functional Gain - VAPB ENSG00000124164 CDS Human protein_coding chr20:57019222 chr20:57019226 synonymous SNV . 0 25 hm5C_associated_SNPs_104096 0 0 1 1 57019222 57019235 mRNA hsa-miR-335 VAPB miRanda miRanda
8257 chr19 36205655 36205655 1 + C G LUAD 36205654 + 36205634 36205674 41 GGGAGCCAGGAGTTCCCCGCCCACAGCCTGGTGCTAGCAGG GGGAGCCAGGAGTTCCCCGCCGACAGCCTGGTGCTAGCAGG < 41bp 0.552342477788156 0.829394816721743 0.14406589 0.37382898 prediction 0.554104677867174 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205654 chr19:36205655 nonsynonymous SNV 0.827 4 22 hm5C_associated_SNPs_104138 0 0 0 3 36205647 36205669 mRNA hsa-miR-29a ZBTB32 miRanda miRanda
8258 chr19 36205655 36205655 1 + C G LUAD 36205654 + 36205634 36205674 41 GGGAGCCAGGAGTTCCCCGCCCACAGCCTGGTGCTAGCAGG GGGAGCCAGGAGTTCCCCGCCGACAGCCTGGTGCTAGCAGG < 41bp 0.552342477788156 0.829394816721743 0.14406589 0.37382898 prediction 0.554104677867174 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205654 chr19:36205655 nonsynonymous SNV 0.827 4 22 hm5C_associated_SNPs_104138 0 0 0 3 36205647 36205669 mRNA hsa-miR-29b ZBTB32 miRanda miRanda
8259 chr19 36205655 36205655 1 + C G LUAD 36205654 + 36205634 36205674 41 GGGAGCCAGGAGTTCCCCGCCCACAGCCTGGTGCTAGCAGG GGGAGCCAGGAGTTCCCCGCCGACAGCCTGGTGCTAGCAGG < 41bp 0.552342477788156 0.829394816721743 0.14406589 0.37382898 prediction 0.554104677867174 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205654 chr19:36205655 nonsynonymous SNV 0.827 4 22 hm5C_associated_SNPs_104138 0 0 0 3 36205647 36205669 mRNA hsa-miR-29c ZBTB32 miRanda miRanda
8260 chr12 119632103 119632103 1 + C G rs13378054 119632102 + 119632082 119632122 41 CATGGTTTGGTTAATGAAACCCAGTAGCTAACCCCACTGTG CATGGTTTGGTTAATGAAACCGAGTAGCTAACCCCACTGTG < 41bp 0.512557287810657 0.789468080086801 0.1225602 0.55299056 prediction 0.553821584552286 Functional Gain - HSPB8 ENSG00000152137 UTR3 Human protein_coding chr12:119632102 chr12:119632103 . . 0 22 hm5C_associated_SNPs_104154 2 0 0 1 119632103 119632123 mRNA hsa-miR-128 HSPB8 miRanda miRanda
8261 chr1 44443709 44443709 1 + C A rs56842927 44443705 + 44443685 44443725 41 ATGTGTGGGTGGGGCCGTGCCTCACTTTTATTTATTGCTGG ATGTGTGGGTGGGGCCGTGCCTCAATTTTATTTATTGCTGG < 41bp 0.405941071628593 0.776877222335683 0.11501053 0.79804677 prediction 0.553754444671366 Functional Gain - ATP6V0B ENSG00000117410 UTR3 Human protein_coding chr1:44443705 chr1:44443709 . . 0 25 hm5C_associated_SNPs_104157 0 0 1 1 44443705 44443726 mRNA hsa-miR-338-3p ATP6V0B miRanda miRanda
8262 chr10 75552442 75552442 1 + C G SKCM 75552441 + 75552421 75552461 41 TGGCAATGGGCTTCCCAAAACCAAAGAGGCAGCCCCTGCAG TGGCAATGGGCTTCCCAAAACGAAAGAGGCAGCCCCTGCAG < 41bp 0.541521632991553 0.818370774480405 0.11104712 0.32172436 prediction 0.553698282977704 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75552441 chr10:75552442 synonymous SNV . 0 22 hm5C_associated_SNPs_104162 0 0 0 1 75552425 75552447 mRNA hsa-miR-9 KIAA0913 miRanda miRanda
8263 chr16 80583497 80583497 1 + C A rs11866734 80583493 + 80583473 80583513 41 CGTGATATTGATCCTCAGAACGACCTGACTTTTCTTAGGAT CGTGATATTGATCCTCAGAACGACATGACTTTTCTTAGGAT < 41bp 0.380634412877031 0.776594367761484 0.0687767 0.09531611 prediction 0.553188735522969 Functional Gain - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80583493 chr16:80583497 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_104192 0 0 0 2 80583495 80583516 mRNA hsa-miR-192 DYNLRB2 miRanda miRanda
8264 chr16 80583497 80583497 1 + C A rs11866734 80583493 + 80583473 80583513 41 CGTGATATTGATCCTCAGAACGACCTGACTTTTCTTAGGAT CGTGATATTGATCCTCAGAACGACATGACTTTTCTTAGGAT < 41bp 0.380634412877031 0.776594367761484 0.0687767 0.09531611 prediction 0.553188735522969 Functional Gain - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80583493 chr16:80583497 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_104192 0 0 0 2 80583495 80583516 mRNA hsa-miR-215 DYNLRB2 miRanda miRanda
8265 chr2 70131588 70131588 1 + T G rs564137993 70131585 + 70131565 70131605 41 AATCTTATTTATGATATATGCAGTTAACTTACCTTGCCTCA AATCTTATTTATGATATATGCAGGTAACTTACCTTGCCTCA < 41bp 0.432863816820474 0.77645866645001 0.17700315 0.8774749 prediction 0.552917332900021 Functional Gain - SNRNP27 ENSG00000124380 UTR3 Human protein_coding chr2:70131585 chr2:70131588 . . 0 24 hm5C_associated_SNPs_104201 0 0 1 3 70131583 70131603 mRNA hsa-miR-31 SNRNP27 miRanda miRanda
8266 chr2 70131588 70131588 1 + T G rs564137993 70131585 + 70131565 70131605 41 AATCTTATTTATGATATATGCAGTTAACTTACCTTGCCTCA AATCTTATTTATGATATATGCAGGTAACTTACCTTGCCTCA < 41bp 0.432863816820474 0.77645866645001 0.17700315 0.8774749 prediction 0.552917332900021 Functional Gain - SNRNP27 ENSG00000124380 UTR3 Human protein_coding chr2:70131585 chr2:70131588 . . 0 24 hm5C_associated_SNPs_104201 0 0 1 3 70131562 70131589 mRNA hsa-miR-217 SNRNP27 miRanda miRanda
8267 chr2 70131588 70131588 1 + T G rs564137993 70131585 + 70131565 70131605 41 AATCTTATTTATGATATATGCAGTTAACTTACCTTGCCTCA AATCTTATTTATGATATATGCAGGTAACTTACCTTGCCTCA < 41bp 0.432863816820474 0.77645866645001 0.17700315 0.8774749 prediction 0.552917332900021 Functional Gain - SNRNP27 ENSG00000124380 UTR3 Human protein_coding chr2:70131585 chr2:70131588 . . 0 24 hm5C_associated_SNPs_104201 0 0 1 3 70131576 70131599 mRNA hsa-miR-196b SNRNP27 miRanda miRanda
8268 chr15 51201110 51201110 1 + C A UCEC 51201106 + 51201086 51201126 41 CAGCCTTGTCCGCGGCATCACAGCCCTCACCTCCAAGCACG CAGCCTTGTCCGCGGCATCACAGCACTCACCTCCAAGCACG < 41bp 0.559739755130851 0.835878722473795 0.087890446 0.1473243 prediction 0.552277934685887 Functional Gain - AP4E1 ENSG00000081014 CDS Human protein_coding chr15:51201106 chr15:51201110 synonymous SNV . 0 25 hm5C_associated_SNPs_104240 0 0 1 3 51201098 51201119 mRNA hsa-let-7b AP4E1 miRanda miRanda
8269 chr15 51201110 51201110 1 + C A UCEC 51201106 + 51201086 51201126 41 CAGCCTTGTCCGCGGCATCACAGCCCTCACCTCCAAGCACG CAGCCTTGTCCGCGGCATCACAGCACTCACCTCCAAGCACG < 41bp 0.559739755130851 0.835878722473795 0.087890446 0.1473243 prediction 0.552277934685887 Functional Gain - AP4E1 ENSG00000081014 CDS Human protein_coding chr15:51201106 chr15:51201110 synonymous SNV . 0 25 hm5C_associated_SNPs_104240 0 0 1 3 51201098 51201119 mRNA hsa-let-7c AP4E1 miRanda miRanda
8270 chr15 51201110 51201110 1 + C A UCEC 51201106 + 51201086 51201126 41 CAGCCTTGTCCGCGGCATCACAGCCCTCACCTCCAAGCACG CAGCCTTGTCCGCGGCATCACAGCACTCACCTCCAAGCACG < 41bp 0.559739755130851 0.835878722473795 0.087890446 0.1473243 prediction 0.552277934685887 Functional Gain - AP4E1 ENSG00000081014 CDS Human protein_coding chr15:51201106 chr15:51201110 synonymous SNV . 0 25 hm5C_associated_SNPs_104240 0 0 1 3 51201099 51201119 mRNA hsa-let-7i AP4E1 miRanda miRanda
8271 chr11 63137809 63137809 1 + C G LUSC 63137808 + 63137788 63137828 41 AGTGTCGTCGCTTTGTTCATCCTCAGTGGCAGCTCCTTCAC AGTGTCGTCGCTTTGTTCATCGTCAGTGGCAGCTCCTTCAC < 41bp 0.536097615513279 0.812033802651774 0.04700944 0.23698509 prediction 0.55187237427699 Functional Gain - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63137808 chr11:63137809 nonsynonymous SNV 0.003 4 22 hm5C_associated_SNPs_104264 0 0 0 3 63137802 63137822 mRNA hsa-miR-22 SLC22A9 miRanda miRanda
8272 chr11 63137809 63137809 1 + C G LUSC 63137808 + 63137788 63137828 41 AGTGTCGTCGCTTTGTTCATCCTCAGTGGCAGCTCCTTCAC AGTGTCGTCGCTTTGTTCATCGTCAGTGGCAGCTCCTTCAC < 41bp 0.536097615513279 0.812033802651774 0.04700944 0.23698509 prediction 0.55187237427699 Functional Gain - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63137808 chr11:63137809 nonsynonymous SNV 0.003 4 22 hm5C_associated_SNPs_104264 0 0 0 3 63137804 63137825 mRNA hsa-miR-28-5p SLC22A9 miRanda miRanda
8273 chr11 63137809 63137809 1 + C G LUSC 63137808 + 63137788 63137828 41 AGTGTCGTCGCTTTGTTCATCCTCAGTGGCAGCTCCTTCAC AGTGTCGTCGCTTTGTTCATCGTCAGTGGCAGCTCCTTCAC < 41bp 0.536097615513279 0.812033802651774 0.04700944 0.23698509 prediction 0.55187237427699 Functional Gain - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63137808 chr11:63137809 nonsynonymous SNV 0.003 4 22 hm5C_associated_SNPs_104264 0 0 0 3 63137803 63137825 mRNA hsa-miR-708 SLC22A9 miRanda miRanda
8274 chr6 33380552 33380552 1 + T A LAML 33380548 + 33380528 33380568 41 GTCCCTGGGAACCGGCTGGTCAGCTGTGAGAAGTGTCGCCA GTCCCTGGGAACCGGCTGGTCAGCAGTGAGAAGTGTCGCCA < 41bp 0.543429189516441 0.818545964959077 0.433567 0.17647779 prediction 0.550233550885273 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380548 chr6:33380552 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_104361 0 0 1 2 33380531 33380553 mRNA hsa-miR-22 PHF1 miRanda miRanda
8275 chr6 33380552 33380552 1 + T A LAML 33380548 + 33380528 33380568 41 GTCCCTGGGAACCGGCTGGTCAGCTGTGAGAAGTGTCGCCA GTCCCTGGGAACCGGCTGGTCAGCAGTGAGAAGTGTCGCCA < 41bp 0.543429189516441 0.818545964959077 0.433567 0.17647779 prediction 0.550233550885273 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380548 chr6:33380552 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_104361 0 0 1 2 33380536 33380556 mRNA hsa-miR-128 PHF1 miRanda miRanda
8276 chr16 69974448 69974448 1 + C A rs3748388 69974444 + 69974424 69974464 41 CCGGCCAGTTAATTCATTCTCAGCCAATGAAGGTTTGTCTA CCGGCCAGTTAATTCATTCTCAGCAAATGAAGGTTTGTCTA < 41bp 0.387968525132689 0.774790275707716 0.35097677 0.43085122 prediction 0.549580551415432 Functional Gain - WWP2 ENSG00000198373 UTR3 Human protein_coding chr16:69974444 chr16:69974448 . . 0 25 hm5C_associated_SNPs_104405 0 0 1 1 69974436 69974457 mRNA hsa-miR-205 WWP2 miRanda miRanda
8277 chr11 113857403 113857403 1 + T G LGG 113857401 + 113857381 113857421 41 GGCTACTCGGTCTTCCTGATCATCGTTTCTGACACGCTGCC GGCTACTCGGTCTTCCTGATCAGCGTTTCTGACACGCTGCC < 41bp 0.423096541208317 0.774787414780646 0.2027393 0.90532756 prediction 0.549574829561293 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113857401 chr11:113857403 nonsynonymous SNV 0.977 3 23 hm5C_associated_SNPs_104407 0 0 0 1 113857387 113857410 mRNA hsa-miR-494 HTR3A miRanda miRanda
8278 chr1 150305652 150305652 1 + C A STAD 150305648 + 150305628 150305668 41 TGGTGGGCCTGGCTAATCTCCATGCCATGGGCATTGCTCCC TGGTGGGCCTGGCTAATCTCCATGACATGGGCATTGCTCCC < 41bp 0.367628641001448 0.774770102327979 0.60250056 0.23764852 prediction 0.549540204655957 Functional Gain - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150305648 chr1:150305652 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_104411 0 0 0 2 150305642 150305663 mRNA hsa-miR-365 PRPF3 miRanda miRanda
8279 chr1 150305652 150305652 1 + C A STAD 150305648 + 150305628 150305668 41 TGGTGGGCCTGGCTAATCTCCATGCCATGGGCATTGCTCCC TGGTGGGCCTGGCTAATCTCCATGACATGGGCATTGCTCCC < 41bp 0.367628641001448 0.774770102327979 0.60250056 0.23764852 prediction 0.549540204655957 Functional Gain - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150305648 chr1:150305652 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_104411 0 0 0 2 150305640 150305661 mRNA hsa-miR-874 PRPF3 miRanda miRanda
8280 chr19 33077128 33077128 1 + T G rs75083136 33077125 + 33077105 33077145 41 AACACCAATTAAAATACTACCAGTGTAAGTAGAAGGTGTGT AACACCAATTAAAATACTACCAGGGTAAGTAGAAGGTGTGT < 41bp 0.604886209420477 0.87952382783136 0.16742459 0.8954834 prediction 0.549275236821766 Functional Gain - PDCD5 ENSG00000105185 UTR3 Human protein_coding chr19:33077125 chr19:33077128 . . 0 24 hm5C_associated_SNPs_104428 0 0 1 2 33077125 33077146 mRNA hsa-miR-362-3p PDCD5 miRanda miRanda
8281 chr19 33077128 33077128 1 + T G rs75083136 33077125 + 33077105 33077145 41 AACACCAATTAAAATACTACCAGTGTAAGTAGAAGGTGTGT AACACCAATTAAAATACTACCAGGGTAAGTAGAAGGTGTGT < 41bp 0.604886209420477 0.87952382783136 0.16742459 0.8954834 prediction 0.549275236821766 Functional Gain - PDCD5 ENSG00000105185 UTR3 Human protein_coding chr19:33077125 chr19:33077128 . . 0 24 hm5C_associated_SNPs_104428 0 0 1 2 33077127 33077146 mRNA hsa-miR-329 PDCD5 miRanda miRanda
8282 chr12 6647516 6647516 1 + T G rs552128740 6647513 + 6647493 6647533 41 CGCACCTTGTCATGTACCATCAATAAAGTACCCTGTGCTCA CGCACCTTGTCATGTACCATCAAGAAAGTACCCTGTGCTCA < 41bp 0.455189711293343 0.774517254730233 0.06984851 0.30977538 prediction 0.549034509460465 Functional Gain - GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647513 chr12:6647516 . . 0 24 hm5C_associated_SNPs_104444 0 0 1 1 6647511 6647535 mRNA hsa-miR-96 GAPDH miRanda miRanda
8283 chr3 50391305 50391305 1 + C G rs193294004 50391304 + 50391284 50391324 41 ACAGTTGGGCATTTGGAGGCCCGTGTGTGAATTCCTGCTCC ACAGTTGGGCATTTGGAGGCCGGTGTGTGAATTCCTGCTCC < 41bp 0.513322284140391 0.787503413534918 0.26147273 0.56990075 prediction 0.548362258789054 Functional Gain - CYB561D2 ENSG00000114395 UTR3 Human protein_coding chr3:50391304 chr3:50391305 . . 0 22 hm5C_associated_SNPs_104496 0 0 1 1 50391293 50391314 mRNA hsa-miR-377 CYB561D2 miRanda miRanda
8284 chr7 21940692 21940692 1 - G T SARC 21940696 - 21940676 21940716 41 GGTGGCTTTTGCAAAGATGACCGGCATAGGGCATGCCAGCT GGTGGCTTTTGCAAAGATGACCGGAATAGGGCATGCCAGCT < 41bp 0.594171541155752 0.867981780031466 0.37097365 0.61361176 prediction 0.547620477751428 Functional Gain - DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21940696 chr7:21940692 nonsynonymous SNV 0.250 4 25 hm5C_associated_SNPs_104539 0 0 1 2 21940672 21940695 mRNA hsa-miR-28-5p CDCA7L miRanda miRanda
8285 chr7 21940692 21940692 1 - G T SARC 21940696 - 21940676 21940716 41 GGTGGCTTTTGCAAAGATGACCGGCATAGGGCATGCCAGCT GGTGGCTTTTGCAAAGATGACCGGAATAGGGCATGCCAGCT < 41bp 0.594171541155752 0.867981780031466 0.37097365 0.61361176 prediction 0.547620477751428 Functional Gain - DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21940696 chr7:21940692 nonsynonymous SNV 0.250 4 25 hm5C_associated_SNPs_104539 0 0 1 2 21940672 21940697 mRNA hsa-miR-708 CDCA7L miRanda miRanda
8286 chr4 159176039 159176039 1 + C A rs17037314 159176035 + 159176015 159176055 41 AGTTCCTAAGCCCTCTGTGTCAGGCCCCTCATTAACAAAAT AGTTCCTAAGCCCTCTGTGTCAGGACCCTCATTAACAAAAT < 41bp 0.463446525931652 0.773020853978583 0.44589233 0.7476944 prediction 0.546041707957166 Functional Gain - TMEM144 ENSG00000164124 UTR3 Human protein_coding chr4:159176035 chr4:159176039 . . 0 25 hm5C_associated_SNPs_104636 0 0 0 1 159176039 159176060 mRNA hsa-miR-136 TMEM144 miRanda miRanda
8287 chr1 238090364 238090364 1 + T A LUAD 238090360 + 238090340 238090380 41 ATTGAGCATGGCATCGTCACCAACTGGGACGACATGGAGAA ATTGAGCATGGCATCGTCACCAACAGGGACGACATGGAGAA < 41bp 0.473357860933451 0.772495629753674 0.1775482 0.15474743 prediction 0.544991259507348 Functional Gain - LOC100130331 ENSG00000237250;ENSG00000243781 ncRNA_exonic Human other chr1:238090360 chr1:238090364 . . 0 25 hm5C_associated_SNPs_104700 0 0 0 1 238090355 238090379 mRNA hsa-miR-136 LOC100130331 miRanda miRanda
8288 chr11 129873927 129873927 1 + T G rs4936091 129873925 + 129873905 129873945 41 AGAATAGAAAACACCCACAGCGTGAAAAACTGTAAAATTAA AGAATAGAAAACACCCACAGCGGGAAAAACTGTAAAATTAA < 41bp 0.514519354316978 0.78652581380836 0.093518496 0.8339459 prediction 0.544012918982764 Functional Gain - LINC00167 ENSG00000233220 ncRNA_exonic Human lincRNA chr11:129873925 chr11:129873927 . . 0 23 hm5C_associated_SNPs_104765 0 0 0 1 129873923 129873944 mRNA hsa-miR-590-3p NCRNA00167 miRanda miRanda
8289 chr3 138669852 138669852 1 + C G rs77164417 138669851 + 138669831 138669871 41 GTGTTTTCATGATGGGACTGCCGCACAGACCACAGAGAAGC GTGTTTTCATGATGGGACTGCGGCACAGACCACAGAGAAGC < 41bp 0.465944749795907 0.771578297068501 0.12278789 0.2922379 prediction 0.543156594137003 Functional Gain - FOXL2NB ENSG00000206262 UTR3 Human protein_coding chr3:138669851 chr3:138669852 . . 0 22 hm5C_associated_SNPs_104804 0 0 0 1 138669846 138669868 mRNA hsa-miR-330-5p C3orf72 miRanda miRanda
8290 chr11 118186305 118186305 1 + C A rs2231449 118186301 + 118186281 118186321 41 GCTGGCCCAGGTCTCCTCTCCAGTCCCCCTGCGACTCCCTG GCTGGCCCAGGTCTCCTCTCCAGTACCCCTGCGACTCCCTG < 41bp 0.397030943259881 0.771502483531462 0.32286742 0.07919791 prediction 0.543004967062924 Functional Gain - CD3E ENSG00000198851 UTR3 Human protein_coding chr11:118186301 chr11:118186305 . . 0 25 hm5C_associated_SNPs_104811 1 0 1 1 118186285 118186307 mRNA hsa-miR-184 CD3E miRanda miRanda
8291 chr19 36206306 36206306 1 + C A LIHC 36206302 + 36206282 36206322 41 GCCCCTTGGTTGGTGGGGGGCCAGCCTGCCCTGTGGAGCAT GCCCCTTGGTTGGTGGGGGGCCAGACTGCCCTGTGGAGCAT < 41bp 0.371516291399101 0.771083037429956 0.4315327 0.7741804 prediction 0.542166074859911 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36206302 chr19:36206306 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_104857 0 0 0 2 36206303 36206326 mRNA hsa-miR-28-5p ZBTB32 miRanda miRanda
8292 chr19 36206306 36206306 1 + C A LIHC 36206302 + 36206282 36206322 41 GCCCCTTGGTTGGTGGGGGGCCAGCCTGCCCTGTGGAGCAT GCCCCTTGGTTGGTGGGGGGCCAGACTGCCCTGTGGAGCAT < 41bp 0.371516291399101 0.771083037429956 0.4315327 0.7741804 prediction 0.542166074859911 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36206302 chr19:36206306 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_104857 0 0 0 2 36206302 36206330 mRNA hsa-miR-214 ZBTB32 miRanda miRanda
8293 chr7 116146155 116146155 1 + C A GBM 116146151 + 116146131 116146171 41 GGACGATGCTTCTCTTCTGTCAGCCTGCAACTGAGCCAGGA GGACGATGCTTCTCTTCTGTCAGCATGCAACTGAGCCAGGA < 41bp 0.53112148182874 0.802200739094449 0.41492283 0.5619822 prediction 0.542158514531419 Functional Gain - CAV2 ENSG00000105971 CDS Human protein_coding chr7:116146151 chr7:116146155 nonsynonymous SNV 0.983 1 25 hm5C_associated_SNPs_104859 0 0 1 4 116146149 116146168 mRNA hsa-miR-24 CAV2 miRanda miRanda
8294 chr7 116146155 116146155 1 + C A GBM 116146151 + 116146131 116146171 41 GGACGATGCTTCTCTTCTGTCAGCCTGCAACTGAGCCAGGA GGACGATGCTTCTCTTCTGTCAGCATGCAACTGAGCCAGGA < 41bp 0.53112148182874 0.802200739094449 0.41492283 0.5619822 prediction 0.542158514531419 Functional Gain - CAV2 ENSG00000105971 CDS Human protein_coding chr7:116146151 chr7:116146155 nonsynonymous SNV 0.983 1 25 hm5C_associated_SNPs_104859 0 0 1 4 116146139 116146164 mRNA hsa-miR-148a CAV2 miRanda miRanda
8295 chr7 116146155 116146155 1 + C A GBM 116146151 + 116146131 116146171 41 GGACGATGCTTCTCTTCTGTCAGCCTGCAACTGAGCCAGGA GGACGATGCTTCTCTTCTGTCAGCATGCAACTGAGCCAGGA < 41bp 0.53112148182874 0.802200739094449 0.41492283 0.5619822 prediction 0.542158514531419 Functional Gain - CAV2 ENSG00000105971 CDS Human protein_coding chr7:116146151 chr7:116146155 nonsynonymous SNV 0.983 1 25 hm5C_associated_SNPs_104859 0 0 1 4 116146140 116146164 mRNA hsa-miR-152 CAV2 miRanda miRanda
8296 chr7 116146155 116146155 1 + C A GBM 116146151 + 116146131 116146171 41 GGACGATGCTTCTCTTCTGTCAGCCTGCAACTGAGCCAGGA GGACGATGCTTCTCTTCTGTCAGCATGCAACTGAGCCAGGA < 41bp 0.53112148182874 0.802200739094449 0.41492283 0.5619822 prediction 0.542158514531419 Functional Gain - CAV2 ENSG00000105971 CDS Human protein_coding chr7:116146151 chr7:116146155 nonsynonymous SNV 0.983 1 25 hm5C_associated_SNPs_104859 0 0 1 4 116146148 116146170 mRNA hsa-miR-149 CAV2 miRanda miRanda
8297 chr6 52055129 52055129 1 + C A rs17886754 52055125 + 52055105 52055145 41 CATATGGGGAAAATGAAACCCTCCCCAAAATACAAGAAGTT CATATGGGGAAAATGAAACCCTCCACAAAATACAAGAAGTT < 41bp 0.426725824772913 0.771077044789175 0.1444692 0.94249916 prediction 0.54215408957835 Functional Gain - IL17A ENSG00000112115 UTR3 Human protein_coding chr6:52055125 chr6:52055129 . . 0 25 hm5C_associated_SNPs_104860 0 0 0 1 52055129 52055153 mRNA hsa-miR-150 IL17A miRanda miRanda
8298 chr11 74915760 74915760 1 + C A rs575978601 74915756 + 74915736 74915776 41 ACTAAATTGCTGTGTGACTTCAGGCAAGACATTGATCCTCT ACTAAATTGCTGTGTGACTTCAGGAAAGACATTGATCCTCT < 41bp 0.416886910298355 0.770782217183676 0.88844895 0.9191998 prediction 0.541564434367352 Functional Gain - SLCO2B1 ENSG00000137491 UTR3 Human protein_coding chr11:74915756 chr11:74915760 . . 0 25 hm5C_associated_SNPs_104899 0 0 0 1 74915746 74915766 mRNA hsa-miR-431 SLCO2B1 miRanda miRanda
8299 chr16 2548372 2548372 1 + C A UCEC 2548368 + 2548348 2548388 41 CAGCCCCTTCTGCTGTTCTCCTCCCTGCAGCACGGGTACAG CAGCCCCTTCTGCTGTTCTCCTCCATGCAGCACGGGTACAG < 41bp 0.339469417849571 0.770543548999261 0.29606357 0.9370377 prediction 0.541087097998522 Functional Gain - TBC1D24 ENSG00000162065 CDS Human protein_coding chr16:2548368 chr16:2548372 nonsynonymous SNV 0.827 0 25 hm5C_associated_SNPs_104932 0 0 1 1 2548350 2548372 mRNA hsa-miR-185 TBC1D24 miRanda miRanda
8300 chr21 47660785 47660785 1 + T A HNSC 47660781 + 47660761 47660801 41 GACAAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCG GACAAACACTGCGCCAAGAGCTCCACAGCAGAAGCTCCTCG < 41bp 0.416102536724606 0.770436636907208 0.1803599 0.7860724 prediction 0.540873273814416 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660781 chr21:47660785 nonsynonymous SNV 0.119 0 25 hm5C_associated_SNPs_104946 0 0 1 4 47660779 47660800 mRNA hsa-miR-28-5p MCM3APAS miRanda miRanda
8301 chr21 47660785 47660785 1 + T A HNSC 47660781 + 47660761 47660801 41 GACAAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCG GACAAACACTGCGCCAAGAGCTCCACAGCAGAAGCTCCTCG < 41bp 0.416102536724606 0.770436636907208 0.1803599 0.7860724 prediction 0.540873273814416 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660781 chr21:47660785 nonsynonymous SNV 0.119 0 25 hm5C_associated_SNPs_104946 0 0 1 4 47660765 47660786 mRNA hsa-miR-28-5p MCM3APAS miRanda miRanda
8302 chr21 47660785 47660785 1 + T A HNSC 47660781 + 47660761 47660801 41 GACAAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCG GACAAACACTGCGCCAAGAGCTCCACAGCAGAAGCTCCTCG < 41bp 0.416102536724606 0.770436636907208 0.1803599 0.7860724 prediction 0.540873273814416 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660781 chr21:47660785 nonsynonymous SNV 0.119 0 25 hm5C_associated_SNPs_104946 0 0 1 4 47660778 47660800 mRNA hsa-miR-708 MCM3APAS miRanda miRanda
8303 chr21 47660785 47660785 1 + T A HNSC 47660781 + 47660761 47660801 41 GACAAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCG GACAAACACTGCGCCAAGAGCTCCACAGCAGAAGCTCCTCG < 41bp 0.416102536724606 0.770436636907208 0.1803599 0.7860724 prediction 0.540873273814416 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660781 chr21:47660785 nonsynonymous SNV 0.119 0 25 hm5C_associated_SNPs_104946 0 0 1 4 47660764 47660786 mRNA hsa-miR-708 MCM3APAS miRanda miRanda
8304 chr1 3830619 3830619 1 + C A rs4073647 3830615 + 3830595 3830635 41 ATGGGGTTTCACCGCGTGGCCAGGCTGGTCTCAAACTCCTG ATGGGGTTTCACCGCGTGGCCAGGATGGTCTCAAACTCCTG < 41bp 0.420614710649373 0.769927007614559 0.22271645 0.30690932 prediction 0.539854015229117 Functional Gain - LINC01134 ENSG00000236423 ncRNA_exonic Human lincRNA chr1:3830615 chr1:3830619 . . 0 25 hm5C_associated_SNPs_105015 0 0 0 8 3830619 3830641 mRNA hsa-let-7a LOC100133612 miRanda miRanda
8305 chr1 3830619 3830619 1 + C A rs4073647 3830615 + 3830595 3830635 41 ATGGGGTTTCACCGCGTGGCCAGGCTGGTCTCAAACTCCTG ATGGGGTTTCACCGCGTGGCCAGGATGGTCTCAAACTCCTG < 41bp 0.420614710649373 0.769927007614559 0.22271645 0.30690932 prediction 0.539854015229117 Functional Gain - LINC01134 ENSG00000236423 ncRNA_exonic Human lincRNA chr1:3830615 chr1:3830619 . . 0 25 hm5C_associated_SNPs_105015 0 0 0 8 3830619 3830641 mRNA hsa-let-7b LOC100133612 miRanda miRanda
8306 chr1 3830619 3830619 1 + C A rs4073647 3830615 + 3830595 3830635 41 ATGGGGTTTCACCGCGTGGCCAGGCTGGTCTCAAACTCCTG ATGGGGTTTCACCGCGTGGCCAGGATGGTCTCAAACTCCTG < 41bp 0.420614710649373 0.769927007614559 0.22271645 0.30690932 prediction 0.539854015229117 Functional Gain - LINC01134 ENSG00000236423 ncRNA_exonic Human lincRNA chr1:3830615 chr1:3830619 . . 0 25 hm5C_associated_SNPs_105015 0 0 0 8 3830619 3830641 mRNA hsa-let-7c LOC100133612 miRanda miRanda
8307 chr1 3830619 3830619 1 + C A rs4073647 3830615 + 3830595 3830635 41 ATGGGGTTTCACCGCGTGGCCAGGCTGGTCTCAAACTCCTG ATGGGGTTTCACCGCGTGGCCAGGATGGTCTCAAACTCCTG < 41bp 0.420614710649373 0.769927007614559 0.22271645 0.30690932 prediction 0.539854015229117 Functional Gain - LINC01134 ENSG00000236423 ncRNA_exonic Human lincRNA chr1:3830615 chr1:3830619 . . 0 25 hm5C_associated_SNPs_105015 0 0 0 8 3830619 3830641 mRNA hsa-let-7d LOC100133612 miRanda miRanda
8308 chr1 3830619 3830619 1 + C A rs4073647 3830615 + 3830595 3830635 41 ATGGGGTTTCACCGCGTGGCCAGGCTGGTCTCAAACTCCTG ATGGGGTTTCACCGCGTGGCCAGGATGGTCTCAAACTCCTG < 41bp 0.420614710649373 0.769927007614559 0.22271645 0.30690932 prediction 0.539854015229117 Functional Gain - LINC01134 ENSG00000236423 ncRNA_exonic Human lincRNA chr1:3830615 chr1:3830619 . . 0 25 hm5C_associated_SNPs_105015 0 0 0 8 3830619 3830641 mRNA hsa-let-7e LOC100133612 miRanda miRanda
8309 chr1 3830619 3830619 1 + C A rs4073647 3830615 + 3830595 3830635 41 ATGGGGTTTCACCGCGTGGCCAGGCTGGTCTCAAACTCCTG ATGGGGTTTCACCGCGTGGCCAGGATGGTCTCAAACTCCTG < 41bp 0.420614710649373 0.769927007614559 0.22271645 0.30690932 prediction 0.539854015229117 Functional Gain - LINC01134 ENSG00000236423 ncRNA_exonic Human lincRNA chr1:3830615 chr1:3830619 . . 0 25 hm5C_associated_SNPs_105015 0 0 0 8 3830619 3830641 mRNA hsa-let-7f LOC100133612 miRanda miRanda
8310 chr1 3830619 3830619 1 + C A rs4073647 3830615 + 3830595 3830635 41 ATGGGGTTTCACCGCGTGGCCAGGCTGGTCTCAAACTCCTG ATGGGGTTTCACCGCGTGGCCAGGATGGTCTCAAACTCCTG < 41bp 0.420614710649373 0.769927007614559 0.22271645 0.30690932 prediction 0.539854015229117 Functional Gain - LINC01134 ENSG00000236423 ncRNA_exonic Human lincRNA chr1:3830615 chr1:3830619 . . 0 25 hm5C_associated_SNPs_105015 0 0 0 8 3830619 3830641 mRNA hsa-let-7g LOC100133612 miRanda miRanda
8311 chr1 3830619 3830619 1 + C A rs4073647 3830615 + 3830595 3830635 41 ATGGGGTTTCACCGCGTGGCCAGGCTGGTCTCAAACTCCTG ATGGGGTTTCACCGCGTGGCCAGGATGGTCTCAAACTCCTG < 41bp 0.420614710649373 0.769927007614559 0.22271645 0.30690932 prediction 0.539854015229117 Functional Gain - LINC01134 ENSG00000236423 ncRNA_exonic Human lincRNA chr1:3830615 chr1:3830619 . . 0 25 hm5C_associated_SNPs_105015 0 0 0 8 3830619 3830641 mRNA hsa-let-7i LOC100133612 miRanda miRanda
8312 chr2 169764111 169764111 1 + C G LUSC 169764110 + 169764090 169764130 41 CAGAGGCCTTTGAACACACTCCAGGCATCCAAACGGCCAGT CAGAGGCCTTTGAACACACTCGAGGCATCCAAACGGCCAGT < 41bp 0.458655951308063 0.76968330706089 0.17770803 0.8640076 prediction 0.539366614121781 Functional Gain - G6PC2 ENSG00000152254 CDS Human protein_coding chr2:169764110 chr2:169764111 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_105051 0 0 0 3 169764103 169764112 mRNA hsa-miR-122 G6PC2 miRanda miRanda
8313 chr2 169764111 169764111 1 + C G LUSC 169764110 + 169764090 169764130 41 CAGAGGCCTTTGAACACACTCCAGGCATCCAAACGGCCAGT CAGAGGCCTTTGAACACACTCGAGGCATCCAAACGGCCAGT < 41bp 0.458655951308063 0.76968330706089 0.17770803 0.8640076 prediction 0.539366614121781 Functional Gain - G6PC2 ENSG00000152254 CDS Human protein_coding chr2:169764110 chr2:169764111 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_105051 0 0 0 3 169764110 169764131 mRNA hsa-miR-193a-3p G6PC2 miRanda miRanda
8314 chr2 169764111 169764111 1 + C G LUSC 169764110 + 169764090 169764130 41 CAGAGGCCTTTGAACACACTCCAGGCATCCAAACGGCCAGT CAGAGGCCTTTGAACACACTCGAGGCATCCAAACGGCCAGT < 41bp 0.458655951308063 0.76968330706089 0.17770803 0.8640076 prediction 0.539366614121781 Functional Gain - G6PC2 ENSG00000152254 CDS Human protein_coding chr2:169764110 chr2:169764111 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_105051 0 0 0 3 169764110 169764131 mRNA hsa-miR-193b G6PC2 miRanda miRanda
8315 chr12 69995119 69995119 1 + C A UCEC 69995115 + 69995095 69995135 41 ACCCCTGTTAAGCATTCCCACGTGCTGTCGATCTTTGGACC ACCCCTGTTAAGCATTCCCACGTGATGTCGATCTTTGGACC < 41bp 0.376706681207942 0.769605908822093 0.39126623 0.45579445 prediction 0.539211817644187 Functional Gain - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69995115 chr12:69995119 nonsynonymous SNV 0.126 1 25 hm5C_associated_SNPs_105059 0 0 1 2 69995116 69995138 mRNA hsa-miR-133a CCT2 miRanda miRanda
8316 chr12 69995119 69995119 1 + C A UCEC 69995115 + 69995095 69995135 41 ACCCCTGTTAAGCATTCCCACGTGCTGTCGATCTTTGGACC ACCCCTGTTAAGCATTCCCACGTGATGTCGATCTTTGGACC < 41bp 0.376706681207942 0.769605908822093 0.39126623 0.45579445 prediction 0.539211817644187 Functional Gain - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69995115 chr12:69995119 nonsynonymous SNV 0.126 1 25 hm5C_associated_SNPs_105059 0 0 1 2 69995116 69995138 mRNA hsa-miR-133b CCT2 miRanda miRanda
8317 chr4 158256905 158256905 1 + C A KIRC 158256901 + 158256881 158256921 41 ATGAGGGCTACTGTGTTGACCTGGCTGCAGAAATCGCCAAA ATGAGGGCTACTGTGTTGACCTGGATGCAGAAATCGCCAAA < 41bp 0.380177289148431 0.76949410397077 0.35313213 0.45147273 prediction 0.53898820794154 Functional Gain - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158256901 chr4:158256905 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_105077 0 0 0 1 158256888 158256913 mRNA hsa-miR-544 GRIA2 miRanda miRanda
8318 chr16 71675230 71675230 1 + C A rs12927320 71675226 + 71675206 71675246 41 AATCGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACT AATCGCCGGGCATGGTGGCTCACGACTGTAATCCCAGCACT < 41bp 0.398979662704088 0.769349892343563 0.082187414 0.17020667 prediction 0.538699784687126 Functional Gain - MARVELD3 ENSG00000140832 UTR3 Human protein_coding chr16:71675226 chr16:71675230 . . 0 25 hm5C_associated_SNPs_105098 0 0 0 7 71675227 71675249 mRNA hsa-miR-17 MARVELD3 miRanda miRanda
8319 chr16 71675230 71675230 1 + C A rs12927320 71675226 + 71675206 71675246 41 AATCGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACT AATCGCCGGGCATGGTGGCTCACGACTGTAATCCCAGCACT < 41bp 0.398979662704088 0.769349892343563 0.082187414 0.17020667 prediction 0.538699784687126 Functional Gain - MARVELD3 ENSG00000140832 UTR3 Human protein_coding chr16:71675226 chr16:71675230 . . 0 25 hm5C_associated_SNPs_105098 0 0 0 7 71675227 71675249 mRNA hsa-miR-20a MARVELD3 miRanda miRanda
8320 chr16 71675230 71675230 1 + C A rs12927320 71675226 + 71675206 71675246 41 AATCGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACT AATCGCCGGGCATGGTGGCTCACGACTGTAATCCCAGCACT < 41bp 0.398979662704088 0.769349892343563 0.082187414 0.17020667 prediction 0.538699784687126 Functional Gain - MARVELD3 ENSG00000140832 UTR3 Human protein_coding chr16:71675226 chr16:71675230 . . 0 25 hm5C_associated_SNPs_105098 0 0 0 7 71675227 71675249 mRNA hsa-miR-93 MARVELD3 miRanda miRanda
8321 chr16 71675230 71675230 1 + C A rs12927320 71675226 + 71675206 71675246 41 AATCGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACT AATCGCCGGGCATGGTGGCTCACGACTGTAATCCCAGCACT < 41bp 0.398979662704088 0.769349892343563 0.082187414 0.17020667 prediction 0.538699784687126 Functional Gain - MARVELD3 ENSG00000140832 UTR3 Human protein_coding chr16:71675226 chr16:71675230 . . 0 25 hm5C_associated_SNPs_105098 0 0 0 7 71675227 71675249 mRNA hsa-miR-106a MARVELD3 miRanda miRanda
8322 chr16 71675230 71675230 1 + C A rs12927320 71675226 + 71675206 71675246 41 AATCGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACT AATCGCCGGGCATGGTGGCTCACGACTGTAATCCCAGCACT < 41bp 0.398979662704088 0.769349892343563 0.082187414 0.17020667 prediction 0.538699784687126 Functional Gain - MARVELD3 ENSG00000140832 UTR3 Human protein_coding chr16:71675226 chr16:71675230 . . 0 25 hm5C_associated_SNPs_105098 0 0 0 7 71675229 71675249 mRNA hsa-miR-106b MARVELD3 miRanda miRanda
8323 chr16 71675230 71675230 1 + C A rs12927320 71675226 + 71675206 71675246 41 AATCGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACT AATCGCCGGGCATGGTGGCTCACGACTGTAATCCCAGCACT < 41bp 0.398979662704088 0.769349892343563 0.082187414 0.17020667 prediction 0.538699784687126 Functional Gain - MARVELD3 ENSG00000140832 UTR3 Human protein_coding chr16:71675226 chr16:71675230 . . 0 25 hm5C_associated_SNPs_105098 0 0 0 7 71675227 71675249 mRNA hsa-miR-20b MARVELD3 miRanda miRanda
8324 chr16 71675230 71675230 1 + C A rs12927320 71675226 + 71675206 71675246 41 AATCGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACT AATCGCCGGGCATGGTGGCTCACGACTGTAATCCCAGCACT < 41bp 0.398979662704088 0.769349892343563 0.082187414 0.17020667 prediction 0.538699784687126 Functional Gain - MARVELD3 ENSG00000140832 UTR3 Human protein_coding chr16:71675226 chr16:71675230 . . 0 25 hm5C_associated_SNPs_105098 0 0 0 7 71675229 71675249 mRNA hsa-miR-519d MARVELD3 miRanda miRanda
8325 chr8 145101585 145101585 1 + C A rs201925917 145101581 + 145101561 145101601 41 GAGAAGCTGTGCCAGAGGCTCACACAGCGCTATGTGAGCGT GAGAAGCTGTGCCAGAGGCTCACAAAGCGCTATGTGAGCGT < 41bp 0.36249355258506 0.769211143806833 0.028908253 0.071837455 prediction 0.538422287613666 Functional Gain - SPATC1 ENSG00000186583 CDS Human protein_coding chr8:145101581 chr8:145101585 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_105113 0 0 0 1 145101579 145101600 mRNA hsa-miR-221 SPATC1 miRanda miRanda
8326 chr7 102584809 102584809 1 + C A UCEC 102584805 + 102584785 102584825 41 AGATGTGACTACAACATTCACTACCTCTACTACTGGTTAAA AGATGTGACTACAACATTCACTACATCTACTACTGGTTAAA < 41bp 0.354342045355329 0.769207093808925 0.032775313 0.18141317 prediction 0.53841418761785 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584805 chr7:102584809 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105114 0 0 1 14 102584789 102584812 mRNA hsa-let-7a LRRC17 miRanda miRanda
8327 chr7 102584809 102584809 1 + C A UCEC 102584805 + 102584785 102584825 41 AGATGTGACTACAACATTCACTACCTCTACTACTGGTTAAA AGATGTGACTACAACATTCACTACATCTACTACTGGTTAAA < 41bp 0.354342045355329 0.769207093808925 0.032775313 0.18141317 prediction 0.53841418761785 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584805 chr7:102584809 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105114 0 0 1 14 102584791 102584812 mRNA hsa-let-7b LRRC17 miRanda miRanda
8328 chr7 102584809 102584809 1 + C A UCEC 102584805 + 102584785 102584825 41 AGATGTGACTACAACATTCACTACCTCTACTACTGGTTAAA AGATGTGACTACAACATTCACTACATCTACTACTGGTTAAA < 41bp 0.354342045355329 0.769207093808925 0.032775313 0.18141317 prediction 0.53841418761785 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584805 chr7:102584809 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105114 0 0 1 14 102584789 102584812 mRNA hsa-let-7c LRRC17 miRanda miRanda
8329 chr7 102584809 102584809 1 + C A UCEC 102584805 + 102584785 102584825 41 AGATGTGACTACAACATTCACTACCTCTACTACTGGTTAAA AGATGTGACTACAACATTCACTACATCTACTACTGGTTAAA < 41bp 0.354342045355329 0.769207093808925 0.032775313 0.18141317 prediction 0.53841418761785 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584805 chr7:102584809 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105114 0 0 1 14 102584789 102584812 mRNA hsa-let-7d LRRC17 miRanda miRanda
8330 chr7 102584809 102584809 1 + C A UCEC 102584805 + 102584785 102584825 41 AGATGTGACTACAACATTCACTACCTCTACTACTGGTTAAA AGATGTGACTACAACATTCACTACATCTACTACTGGTTAAA < 41bp 0.354342045355329 0.769207093808925 0.032775313 0.18141317 prediction 0.53841418761785 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584805 chr7:102584809 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105114 0 0 1 14 102584789 102584812 mRNA hsa-let-7e LRRC17 miRanda miRanda
8331 chr7 102584809 102584809 1 + C A UCEC 102584805 + 102584785 102584825 41 AGATGTGACTACAACATTCACTACCTCTACTACTGGTTAAA AGATGTGACTACAACATTCACTACATCTACTACTGGTTAAA < 41bp 0.354342045355329 0.769207093808925 0.032775313 0.18141317 prediction 0.53841418761785 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584805 chr7:102584809 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105114 0 0 1 14 102584791 102584812 mRNA hsa-let-7f LRRC17 miRanda miRanda
8332 chr7 102584809 102584809 1 + C A UCEC 102584805 + 102584785 102584825 41 AGATGTGACTACAACATTCACTACCTCTACTACTGGTTAAA AGATGTGACTACAACATTCACTACATCTACTACTGGTTAAA < 41bp 0.354342045355329 0.769207093808925 0.032775313 0.18141317 prediction 0.53841418761785 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584805 chr7:102584809 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105114 0 0 1 14 102584789 102584812 mRNA hsa-miR-98 LRRC17 miRanda miRanda
8333 chr7 102584809 102584809 1 + C A UCEC 102584805 + 102584785 102584825 41 AGATGTGACTACAACATTCACTACCTCTACTACTGGTTAAA AGATGTGACTACAACATTCACTACATCTACTACTGGTTAAA < 41bp 0.354342045355329 0.769207093808925 0.032775313 0.18141317 prediction 0.53841418761785 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584805 chr7:102584809 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105114 0 0 1 14 102584791 102584811 mRNA hsa-miR-196a LRRC17 miRanda miRanda
8334 chr7 102584809 102584809 1 + C A UCEC 102584805 + 102584785 102584825 41 AGATGTGACTACAACATTCACTACCTCTACTACTGGTTAAA AGATGTGACTACAACATTCACTACATCTACTACTGGTTAAA < 41bp 0.354342045355329 0.769207093808925 0.032775313 0.18141317 prediction 0.53841418761785 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584805 chr7:102584809 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105114 0 0 1 14 102584789 102584812 mRNA hsa-let-7g LRRC17 miRanda miRanda
8335 chr7 102584809 102584809 1 + C A UCEC 102584805 + 102584785 102584825 41 AGATGTGACTACAACATTCACTACCTCTACTACTGGTTAAA AGATGTGACTACAACATTCACTACATCTACTACTGGTTAAA < 41bp 0.354342045355329 0.769207093808925 0.032775313 0.18141317 prediction 0.53841418761785 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584805 chr7:102584809 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105114 0 0 1 14 102584789 102584812 mRNA hsa-let-7i LRRC17 miRanda miRanda
8336 chr7 102584809 102584809 1 + C A UCEC 102584805 + 102584785 102584825 41 AGATGTGACTACAACATTCACTACCTCTACTACTGGTTAAA AGATGTGACTACAACATTCACTACATCTACTACTGGTTAAA < 41bp 0.354342045355329 0.769207093808925 0.032775313 0.18141317 prediction 0.53841418761785 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584805 chr7:102584809 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105114 0 0 1 14 102584787 102584809 mRNA hsa-miR-142-3p LRRC17 miRanda miRanda
8337 chr7 102584809 102584809 1 + C A UCEC 102584805 + 102584785 102584825 41 AGATGTGACTACAACATTCACTACCTCTACTACTGGTTAAA AGATGTGACTACAACATTCACTACATCTACTACTGGTTAAA < 41bp 0.354342045355329 0.769207093808925 0.032775313 0.18141317 prediction 0.53841418761785 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584805 chr7:102584809 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105114 0 0 1 14 102584791 102584811 mRNA hsa-miR-196b LRRC17 miRanda miRanda
8338 chr7 102584809 102584809 1 + C A UCEC 102584805 + 102584785 102584825 41 AGATGTGACTACAACATTCACTACCTCTACTACTGGTTAAA AGATGTGACTACAACATTCACTACATCTACTACTGGTTAAA < 41bp 0.354342045355329 0.769207093808925 0.032775313 0.18141317 prediction 0.53841418761785 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584805 chr7:102584809 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105114 0 0 1 14 102584793 102584812 mRNA hsa-miR-202 LRRC17 miRanda miRanda
8339 chr7 102584809 102584809 1 + C A UCEC 102584805 + 102584785 102584825 41 AGATGTGACTACAACATTCACTACCTCTACTACTGGTTAAA AGATGTGACTACAACATTCACTACATCTACTACTGGTTAAA < 41bp 0.354342045355329 0.769207093808925 0.032775313 0.18141317 prediction 0.53841418761785 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584805 chr7:102584809 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105114 0 0 1 14 102584796 102584816 mRNA hsa-miR-411 LRRC17 miRanda miRanda
8340 chr15 35529956 35529956 1 + T A rs142510218 35529952 + 35529932 35529972 41 TTCAAGCTCCTCCTGCAACTCACATATCTTGACGGCTATGA TTCAAGCTCCTCCTGCAACTCACAAATCTTGACGGCTATGA < 41bp 0.45860211188906 0.768928404508801 0.043523252 0.062232584 prediction 0.537856809017601 Functional Gain - ANP32AP1 ENSG00000259516 ncRNA_exonic Human transcribed_processed_pseudogene chr15:35529952 chr15:35529956 . . 0 25 hm5C_associated_SNPs_105155 0 0 0 2 35529939 35529960 mRNA hsa-miR-190 LOC723972 miRanda miRanda
8341 chr15 35529956 35529956 1 + T A rs142510218 35529952 + 35529932 35529972 41 TTCAAGCTCCTCCTGCAACTCACATATCTTGACGGCTATGA TTCAAGCTCCTCCTGCAACTCACAAATCTTGACGGCTATGA < 41bp 0.45860211188906 0.768928404508801 0.043523252 0.062232584 prediction 0.537856809017601 Functional Gain - ANP32AP1 ENSG00000259516 ncRNA_exonic Human transcribed_processed_pseudogene chr15:35529952 chr15:35529956 . . 0 25 hm5C_associated_SNPs_105155 0 0 0 2 35529940 35529960 mRNA hsa-miR-190b LOC723972 miRanda miRanda
8342 chr5 175722149 175722149 1 + C A UCEC 175722145 + 175722125 175722165 41 GTTTTTGATGGACTTTGTGTCACCCCAGCATTACCCACCAA GTTTTTGATGGACTTTGTGTCACCACAGCATTACCCACCAA < 41bp 0.342123212244475 0.768749377742833 0.109062135 0.049417704 prediction 0.537498755485667 Functional Gain - SIMC1 ENSG00000170085 CDS Human protein_coding chr5:175722145 chr5:175722149 synonymous SNV . 0 25 hm5C_associated_SNPs_105178 0 0 0 2 175722137 175722158 mRNA hsa-miR-155 C5orf25 miRanda miRanda
8343 chr5 175722149 175722149 1 + C A UCEC 175722145 + 175722125 175722165 41 GTTTTTGATGGACTTTGTGTCACCCCAGCATTACCCACCAA GTTTTTGATGGACTTTGTGTCACCACAGCATTACCCACCAA < 41bp 0.342123212244475 0.768749377742833 0.109062135 0.049417704 prediction 0.537498755485667 Functional Gain - SIMC1 ENSG00000170085 CDS Human protein_coding chr5:175722145 chr5:175722149 synonymous SNV . 0 25 hm5C_associated_SNPs_105178 0 0 0 2 175722134 175722156 mRNA hsa-miR-299-3p C5orf25 miRanda miRanda
8344 chr17 76167915 76167915 1 + C A UCEC 76167911 + 76167891 76167931 41 CCCCACTCCGGACCCCAACACTGCCTACGCCTCCTACCCAG CCCCACTCCGGACCCCAACACTGCATACGCCTCCTACCCAG < 41bp 0.648742283066347 0.91721390491832 0.14096212 0.58590156 prediction 0.536943243703946 Functional Gain - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167911 chr17:76167915 nonsynonymous SNV 0.416 0 25 hm5C_associated_SNPs_105209 0 0 1 4 76167895 76167916 mRNA hsa-miR-34a SYNGR2 miRanda miRanda
8345 chr17 76167915 76167915 1 + C A UCEC 76167911 + 76167891 76167931 41 CCCCACTCCGGACCCCAACACTGCCTACGCCTCCTACCCAG CCCCACTCCGGACCCCAACACTGCATACGCCTCCTACCCAG < 41bp 0.648742283066347 0.91721390491832 0.14096212 0.58590156 prediction 0.536943243703946 Functional Gain - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167911 chr17:76167915 nonsynonymous SNV 0.416 0 25 hm5C_associated_SNPs_105209 0 0 1 4 76167894 76167916 mRNA hsa-miR-34c-5p SYNGR2 miRanda miRanda
8346 chr17 76167915 76167915 1 + C A UCEC 76167911 + 76167891 76167931 41 CCCCACTCCGGACCCCAACACTGCCTACGCCTCCTACCCAG CCCCACTCCGGACCCCAACACTGCATACGCCTCCTACCCAG < 41bp 0.648742283066347 0.91721390491832 0.14096212 0.58590156 prediction 0.536943243703946 Functional Gain - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167911 chr17:76167915 nonsynonymous SNV 0.416 0 25 hm5C_associated_SNPs_105209 0 0 1 4 76167895 76167916 mRNA hsa-miR-449a SYNGR2 miRanda miRanda
8347 chr17 76167915 76167915 1 + C A UCEC 76167911 + 76167891 76167931 41 CCCCACTCCGGACCCCAACACTGCCTACGCCTCCTACCCAG CCCCACTCCGGACCCCAACACTGCATACGCCTCCTACCCAG < 41bp 0.648742283066347 0.91721390491832 0.14096212 0.58590156 prediction 0.536943243703946 Functional Gain - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167911 chr17:76167915 nonsynonymous SNV 0.416 0 25 hm5C_associated_SNPs_105209 0 0 1 4 76167895 76167916 mRNA hsa-miR-449b SYNGR2 miRanda miRanda
8348 chr1 201489272 201489272 1 + C G UCEC 201489271 + 201489251 201489291 41 CCAAGAAGGATGTCCACATGCCTAAGCACCCGGAGCTGGCA CCAAGAAGGATGTCCACATGCGTAAGCACCCGGAGCTGGCA < 41bp 0.472306852305532 0.768042357817681 0.06307024 0.25297683 prediction 0.536084715635362 Functional Gain - RPS10P7 ENSG00000223396;ENSG00000242150 ncRNA_exonic Human other chr1:201489271 chr1:201489272 . . 0 22 hm5C_associated_SNPs_105273 0 0 0 1 201489272 201489295 mRNA hsa-miR-346 RPS10P7 miRanda miRanda
8349 chr12 53681945 53681945 1 + C G rs145892138 53681944 + 53681924 53681964 41 CCTGGCCTGAATGGCAGGAGCCGGAGGGCCAAGAAGGTGGC CCTGGCCTGAATGGCAGGAGCGGGAGGGCCAAGAAGGTGGC < 41bp 0.57056381672679 0.838445387145414 0.9103102 0.9071392 prediction 0.535763140837246 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53681944 chr12:53681945 nonsynonymous SNV 0.041 1 22 hm5C_associated_SNPs_105288 0 0 1 1 53681934 53681955 mRNA hsa-miR-328 ESPL1 miRanda miRanda
8350 chr3 32208809 32208809 1 + T G rs529696104 32208806 + 32208786 32208826 41 AGCAAGTCCCAAACACATTACACTGAAGAGATTTTGGTGAG AGCAAGTCCCAAACACATTACACGGAAGAGATTTTGGTGAG < 41bp 0.421501777943203 0.767867067844237 0.048281997 0.23264563 prediction 0.535734135688474 Functional Gain - GPD1L ENSG00000152642 UTR3 Human protein_coding chr3:32208806 chr3:32208809 . . 0 24 hm5C_associated_SNPs_105291 0 0 1 1 32208798 32208819 mRNA hsa-miR-216b GPD1L miRanda miRanda
8351 chr15 83781578 83781578 1 + T C UCEC 83781576 + 83781556 83781596 41 ACTATTGTAGGGGTTGCTGCCCTCATCCTGTTCCTGGTAGC ACTATTGTAGGGGTTGCTGCCCCCATCCTGTTCCTGGTAGC < 41bp 0.543201895541051 0.810653173991756 0.08614865 0.22433197 prediction 0.53490255690141 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83781576 chr15:83781578 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_105353 0 0 0 2 83781578 83781604 mRNA hsa-miR-214 TM6SF1 miRanda miRanda
8352 chr15 83781578 83781578 1 + T C UCEC 83781576 + 83781556 83781596 41 ACTATTGTAGGGGTTGCTGCCCTCATCCTGTTCCTGGTAGC ACTATTGTAGGGGTTGCTGCCCCCATCCTGTTCCTGGTAGC < 41bp 0.543201895541051 0.810653173991756 0.08614865 0.22433197 prediction 0.53490255690141 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83781576 chr15:83781578 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_105353 0 0 0 2 83781571 83781592 mRNA hsa-miR-873 TM6SF1 miRanda miRanda
8353 chr17 29325811 29325811 1 + C G BLCA 29325810 + 29325790 29325830 41 TGTGAGAGGTTTTCTACCAGCCAGGTCTTATGTTCCCAGGC TGTGAGAGGTTTTCTACCAGCGAGGTCTTATGTTCCCAGGC < 41bp 0.56867231048679 0.836042145667048 0.22990066 0.6849325 prediction 0.534739670360516 Functional Gain - RNF135 ENSG00000181481 CDS Human protein_coding chr17:29325810 chr17:29325811 nonsynonymous SNV 0.939 4 22 hm5C_associated_SNPs_105366 0 0 1 1 29325793 29325815 mRNA hsa-miR-370 RNF135 miRanda miRanda
8354 chr14 62120422 62120422 1 + C G rs113167783 62120418 + 62120398 62120438 41 TCTTCACCCAATCCCACAGCCACACGTGCCTGCTTGCTCAC TCTTCACCCAATCCCACAGCCACAGGTGCCTGCTTGCTCAC < 41bp 0.523753037041201 0.791088715611274 0.7186717 0.8478979 prediction 0.534671357140147 Functional Gain - FLJ22447 ENSG00000232774 CDS Human lincRNA chr14:62120418 chr14:62120422 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_105375 0 0 0 2 62120410 62120432 mRNA hsa-miR-15a FLJ22447 miRanda miRanda
8355 chr14 62120422 62120422 1 + C G rs113167783 62120418 + 62120398 62120438 41 TCTTCACCCAATCCCACAGCCACACGTGCCTGCTTGCTCAC TCTTCACCCAATCCCACAGCCACAGGTGCCTGCTTGCTCAC < 41bp 0.523753037041201 0.791088715611274 0.7186717 0.8478979 prediction 0.534671357140147 Functional Gain - FLJ22447 ENSG00000232774 CDS Human lincRNA chr14:62120418 chr14:62120422 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_105375 0 0 0 2 62120411 62120432 mRNA hsa-miR-15b FLJ22447 miRanda miRanda
8356 chr1 148932895 148932895 1 + C A UCEC 148932891 + 148932871 148932911 41 AGACGGGTGAGGTACAGGCTCAGTCTGCGGCCAAGACTCCG AGACGGGTGAGGTACAGGCTCAGTATGCGGCCAAGACTCCG < 41bp 0.375632233090572 0.766578398391032 0.18571737 0.17346591 prediction 0.533156796782064 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932891 chr1:148932895 . . 0 25 hm5C_associated_SNPs_105482 0 0 0 1 148932894 148932915 mRNA hsa-miR-184 LOC645166 miRanda miRanda
8357 chr3 122821308 122821308 1 + C G rs377598783 122821307 + 122821287 122821327 41 AGATGAAAGTTGACCTGAGCCCGAAGGACAAAAAGGTTGAA AGATGAAAGTTGACCTGAGCCGGAAGGACAAAAAGGTTGAA < 41bp 0.46271686459264 0.766475427509799 0.3096363 0.6593 prediction 0.532950855019599 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122821307 chr3:122821308 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_105501 0 0 1 1 122821287 122821308 mRNA hsa-miR-24 PDIA5 miRanda miRanda
8358 chr10 81682463 81682463 1 + T G rs45550832 81682461 + 81682441 81682481 41 ATGTCTGGGAAGAAGCTTTTCGTGACCAATGGTGAGCGGAT ATGTCTGGGAAGAAGCTTTTCGGGACCAATGGTGAGCGGAT < 41bp 0.446405947851652 0.766285654951678 0.1663911 0.9079562 prediction 0.532571309903356 Functional Gain - MBL1P ENSG00000242600 ncRNA_exonic Human transcribed_unitary_pseudogene chr10:81682461 chr10:81682463 . . 0 23 hm5C_associated_SNPs_105526 0 0 1 1 81682447 81682470 mRNA hsa-miR-96 MBL1P miRanda miRanda
8359 chr6 50683050 50683050 1 + C G LUSC 50683046 + 50683026 50683066 41 GCACAGCCACCCGGCCGTCACCCCCGACGCCTACTCTCTGA GCACAGCCACCCGGCCGTCACCCCGGACGCCTACTCTCTGA < 41bp 0.481892057949934 0.766071286277543 0.10988781 0.2566761 prediction 0.532142572555086 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683046 chr6:50683050 synonymous SNV . 0 25 hm5C_associated_SNPs_105553 0 0 0 1 50683042 50683064 mRNA hsa-let-7i TFAP2D miRanda miRanda
8360 chr18 21739506 21739506 1 + T A rs143434314 21739502 + 21739482 21739522 41 GTGGACCCTTTATTGTCTAACTGATAAGAATCAACAAGGTC GTGGACCCTTTATTGTCTAACTGAAAAGAATCAACAAGGTC < 41bp 0.455714194979088 0.765782651686827 0.099279344 0.09806442 prediction 0.531565303373653 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739502 chr18:21739506 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_105597 0 0 0 2 21739487 21739507 mRNA hsa-miR-223 CABYR miRanda miRanda
8361 chr18 21739506 21739506 1 + T A rs143434314 21739502 + 21739482 21739522 41 GTGGACCCTTTATTGTCTAACTGATAAGAATCAACAAGGTC GTGGACCCTTTATTGTCTAACTGAAAAGAATCAACAAGGTC < 41bp 0.455714194979088 0.765782651686827 0.099279344 0.09806442 prediction 0.531565303373653 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739502 chr18:21739506 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_105597 0 0 0 2 21739487 21739508 mRNA hsa-miR-361-5p CABYR miRanda miRanda
8362 chr6 27293219 27293219 1 + T G THCA 27293217 + 27293197 27293237 41 GGTTTCCTCTTCTTGTTCCTCATGATTTGGACTAGTTTCTA GGTTTCCTCTTCTTGTTCCTCAGGATTTGGACTAGTTTCTA < 41bp 0.543123201588867 0.808770854899543 0.065908134 0.5042193 prediction 0.531295306621351 Functional Gain - VN1R10P ENSG00000220758 ncRNA_exonic Human unprocessed_pseudogene chr6:27293217 chr6:27293219 . . 0 23 hm5C_associated_SNPs_105615 0 0 0 2 27293214 27293234 mRNA hsa-miR-212 FKSG83 miRanda miRanda
8363 chr6 27293219 27293219 1 + T G THCA 27293217 + 27293197 27293237 41 GGTTTCCTCTTCTTGTTCCTCATGATTTGGACTAGTTTCTA GGTTTCCTCTTCTTGTTCCTCAGGATTTGGACTAGTTTCTA < 41bp 0.543123201588867 0.808770854899543 0.065908134 0.5042193 prediction 0.531295306621351 Functional Gain - VN1R10P ENSG00000220758 ncRNA_exonic Human unprocessed_pseudogene chr6:27293217 chr6:27293219 . . 0 23 hm5C_associated_SNPs_105615 0 0 0 2 27293213 27293234 mRNA hsa-miR-132 FKSG83 miRanda miRanda
8364 chr2 27280180 27280180 1 + T C STAD 27280178 + 27280158 27280198 41 CTTTATGTCTTAGCTACACACTTGAATGCAACTACAACACT CTTTATGTCTTAGCTACACACTCGAATGCAACTACAACACT < 41bp 0.53150958210045 0.797026448148935 0.10574561 0.46990594 prediction 0.531033732096971 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27280178 chr2:27280180 synonymous SNV . 0 23 hm5C_associated_SNPs_105637 0 0 1 3 27280179 27280201 mRNA hsa-miR-199a-5p AGBL5 miRanda miRanda
8365 chr2 27280180 27280180 1 + T C STAD 27280178 + 27280158 27280198 41 CTTTATGTCTTAGCTACACACTTGAATGCAACTACAACACT CTTTATGTCTTAGCTACACACTCGAATGCAACTACAACACT < 41bp 0.53150958210045 0.797026448148935 0.10574561 0.46990594 prediction 0.531033732096971 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27280178 chr2:27280180 synonymous SNV . 0 23 hm5C_associated_SNPs_105637 0 0 1 3 27280178 27280201 mRNA hsa-miR-199b-5p AGBL5 miRanda miRanda
8366 chr2 27280180 27280180 1 + T C STAD 27280178 + 27280158 27280198 41 CTTTATGTCTTAGCTACACACTTGAATGCAACTACAACACT CTTTATGTCTTAGCTACACACTCGAATGCAACTACAACACT < 41bp 0.53150958210045 0.797026448148935 0.10574561 0.46990594 prediction 0.531033732096971 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27280178 chr2:27280180 synonymous SNV . 0 23 hm5C_associated_SNPs_105637 0 0 1 3 27280171 27280181 mRNA hsa-miR-382 AGBL5 miRanda miRanda
8367 chr2 46808710 46808710 1 + C A rs186205049 46808706 + 46808686 46808726 41 CACGTAGCCAAAGGTCGCTCCAAGCGTACAGGAGATGGGCC CACGTAGCCAAAGGTCGCTCCAAGAGTACAGGAGATGGGCC < 41bp 0.371957452036534 0.765512277252859 0.8930359 0.9023516 prediction 0.531024554505718 Functional Gain - PIGF ENSG00000151665 CDS Human protein_coding chr2:46808706 chr2:46808710 synonymous SNV . 0 25 hm5C_associated_SNPs_105639 0 0 0 1 46808703 46808728 mRNA hsa-miR-328 RHOQ miRanda miRanda
8368 chr11 118849777 118849777 1 + C A OV 118849773 + 118849753 118849793 41 AAGAGGGAGGACCTGACAAGCACACTCCCCTCCTCTCAGCC AAGAGGGAGGACCTGACAAGCACAATCCCCTCCTCTCAGCC < 41bp 0.349892567314374 0.765365899958437 0.15085348 0.19455951 prediction 0.530731799916875 Functional Gain - FOXR1 ENSG00000176302 CDS Human protein_coding chr11:118849773 chr11:118849777 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_105663 0 0 0 1 118849758 118849777 mRNA hsa-miR-218 FOXR1 miRanda miRanda
8369 chr3 150176547 150176547 1 + T G rs144546551 150176544 + 150176524 150176564 41 GGTTGTGTGTTTGGCCTTTTCAGTATTAGACAATCATTCTA GGTTGTGTGTTTGGCCTTTTCAGGATTAGACAATCATTCTA < 41bp 0.421443616171317 0.765048422167868 0.29740876 0.91941845 prediction 0.530096844335736 Functional Gain - TSC22D2 ENSG00000196428 UTR3 Human protein_coding chr3:150176544 chr3:150176547 . . 0 24 hm5C_associated_SNPs_105710 0 0 1 4 150176538 150176559 mRNA hsa-miR-219-5p TSC22D2 miRanda miRanda
8370 chr3 150176547 150176547 1 + T G rs144546551 150176544 + 150176524 150176564 41 GGTTGTGTGTTTGGCCTTTTCAGTATTAGACAATCATTCTA GGTTGTGTGTTTGGCCTTTTCAGGATTAGACAATCATTCTA < 41bp 0.421443616171317 0.765048422167868 0.29740876 0.91941845 prediction 0.530096844335736 Functional Gain - TSC22D2 ENSG00000196428 UTR3 Human protein_coding chr3:150176544 chr3:150176547 . . 0 24 hm5C_associated_SNPs_105710 0 0 1 4 150176530 150176551 mRNA hsa-miR-200b TSC22D2 miRanda miRanda
8371 chr3 150176547 150176547 1 + T G rs144546551 150176544 + 150176524 150176564 41 GGTTGTGTGTTTGGCCTTTTCAGTATTAGACAATCATTCTA GGTTGTGTGTTTGGCCTTTTCAGGATTAGACAATCATTCTA < 41bp 0.421443616171317 0.765048422167868 0.29740876 0.91941845 prediction 0.530096844335736 Functional Gain - TSC22D2 ENSG00000196428 UTR3 Human protein_coding chr3:150176544 chr3:150176547 . . 0 24 hm5C_associated_SNPs_105710 0 0 1 4 150176529 150176551 mRNA hsa-miR-200c TSC22D2 miRanda miRanda
8372 chr3 150176547 150176547 1 + T G rs144546551 150176544 + 150176524 150176564 41 GGTTGTGTGTTTGGCCTTTTCAGTATTAGACAATCATTCTA GGTTGTGTGTTTGGCCTTTTCAGGATTAGACAATCATTCTA < 41bp 0.421443616171317 0.765048422167868 0.29740876 0.91941845 prediction 0.530096844335736 Functional Gain - TSC22D2 ENSG00000196428 UTR3 Human protein_coding chr3:150176544 chr3:150176547 . . 0 24 hm5C_associated_SNPs_105710 0 0 1 4 150176529 150176551 mRNA hsa-miR-429 TSC22D2 miRanda miRanda
8373 chr6 26423283 26423283 1 + T G GBM 26423280 + 26423260 26423300 41 ACATGGAGGTGCGGTGGTTCCAGTCTCAGTTCTCCCCTGCA ACATGGAGGTGCGGTGGTTCCAGGCTCAGTTCTCCCCTGCA < 41bp 0.380475265193024 0.765000845472978 0.26421463 0.8922496 prediction 0.530001690945955 Functional Gain - BTN2A3P ENSG00000124549 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:26423280 chr6:26423283 . . 0 24 hm5C_associated_SNPs_105721 0 0 0 1 26423269 26423289 mRNA hsa-miR-378 BTN2A3 miRanda miRanda
8374 chr20 39986541 39986541 1 + T G STAD 39986538 + 39986518 39986558 41 TCAGAAATGGGTACAAGTTCCTGTACTGCTCGGCGCGGGCC TCAGAAATGGGTACAAGTTCCTGGACTGCTCGGCGCGGGCC < 41bp 0.644024511464239 0.908849198185351 0.11211771 0.49072996 prediction 0.529649373442223 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986538 chr20:39986541 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_105750 0 0 0 1 39986522 39986541 mRNA hsa-miR-873 LPIN3 miRanda miRanda
8375 chr7 92166627 92166627 1 + T A rs6951704 92166623 + 92166603 92166643 41 TTGGTCAGGCTGGTCTCGAACTCCTGACCTTGTGATACACC TTGGTCAGGCTGGTCTCGAACTCCAGACCTTGTGATACACC < 41bp 0.479212126765168 0.764467747780295 0.19882137 0.8974575 prediction 0.52893549556059 Functional Gain - RBM48 ENSG00000127993 UTR3 Human protein_coding chr7:92166623 chr7:92166627 . . 0 25 hm5C_associated_SNPs_105805 0 0 1 3 92166626 92166648 mRNA hsa-miR-34a C7orf64 miRanda miRanda
8376 chr7 92166627 92166627 1 + T A rs6951704 92166623 + 92166603 92166643 41 TTGGTCAGGCTGGTCTCGAACTCCTGACCTTGTGATACACC TTGGTCAGGCTGGTCTCGAACTCCAGACCTTGTGATACACC < 41bp 0.479212126765168 0.764467747780295 0.19882137 0.8974575 prediction 0.52893549556059 Functional Gain - RBM48 ENSG00000127993 UTR3 Human protein_coding chr7:92166623 chr7:92166627 . . 0 25 hm5C_associated_SNPs_105805 0 0 1 3 92166626 92166648 mRNA hsa-miR-449a C7orf64 miRanda miRanda
8377 chr7 92166627 92166627 1 + T A rs6951704 92166623 + 92166603 92166643 41 TTGGTCAGGCTGGTCTCGAACTCCTGACCTTGTGATACACC TTGGTCAGGCTGGTCTCGAACTCCAGACCTTGTGATACACC < 41bp 0.479212126765168 0.764467747780295 0.19882137 0.8974575 prediction 0.52893549556059 Functional Gain - RBM48 ENSG00000127993 UTR3 Human protein_coding chr7:92166623 chr7:92166627 . . 0 25 hm5C_associated_SNPs_105805 0 0 1 3 92166626 92166648 mRNA hsa-miR-449b C7orf64 miRanda miRanda
8378 chr1 236368452 236368452 1 + T C UCEC 236368450 + 236368430 236368470 41 ACCCTGGAATGGTCCCCAGCCATGGATTCAGTCCCAGATCT ACCCTGGAATGGTCCCCAGCCACGGATTCAGTCCCAGATCT < 41bp 0.516565241772716 0.781015674799602 0.17713737 0.15227231 prediction 0.528900866053773 Functional Gain - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236368450 chr1:236368452 synonymous SNV . 0 23 hm5C_associated_SNPs_105811 0 0 1 1 236368452 236368473 mRNA hsa-miR-499-5p GPR137B miRanda miRanda
8379 chr2 73452826 73452826 1 + T C STAD 73452824 + 73452804 73452844 41 CGCCACAGCCGCCACAAGATCCTCAGGTGCCAGCTGGGGAC CGCCACAGCCGCCACAAGATCCCCAGGTGCCAGCTGGGGAC < 41bp 0.486739049963533 0.764392896234256 0.10493052 0.21246082 prediction 0.528785792468512 Functional Gain - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73452824 chr2:73452826 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_105819 0 0 1 2 73452815 73452829 mRNA hsa-miR-125b SMYD5 miRanda miRanda
8380 chr2 73452826 73452826 1 + T C STAD 73452824 + 73452804 73452844 41 CGCCACAGCCGCCACAAGATCCTCAGGTGCCAGCTGGGGAC CGCCACAGCCGCCACAAGATCCCCAGGTGCCAGCTGGGGAC < 41bp 0.486739049963533 0.764392896234256 0.10493052 0.21246082 prediction 0.528785792468512 Functional Gain - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73452824 chr2:73452826 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_105819 0 0 1 2 73452806 73452829 mRNA hsa-miR-125a-5p SMYD5 miRanda miRanda
8381 chr5 150175100 150175100 1 + T C LIHC 150175098 + 150175078 150175118 41 ATCATCCTGGCCACCATTGTCATCATGACCTCGTTGTTGCT ATCATCCTGGCCACCATTGTCACCATGACCTCGTTGTTGCT < 41bp 0.489969476914535 0.764323321572183 0.043800324 0.12045914 prediction 0.528646643144365 Functional Gain - SMIM3 ENSG00000256235 CDS Human protein_coding chr5:150175098 chr5:150175100 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_105831 0 0 1 1 150175085 150175106 mRNA hsa-miR-433 C5orf62 miRanda miRanda
8382 chr2 215440491 215440491 1 + T A LUAD 215440487 + 215440467 215440507 41 TGTCATTGTCACAACGGGGACTGGTGGAAGCCTGCTCAGTG TGTCATTGTCACAACGGGGACTGGAGGAAGCCTGCTCAGTG < 41bp 0.58271469304381 0.84700760390033 0.3664017 0.40038392 prediction 0.528585821713041 Functional Gain - VWC2L ENSG00000174453 CDS Human protein_coding chr2:215440487 chr2:215440491 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_105843 0 0 0 2 215440489 215440510 mRNA hsa-miR-141 VWC2L miRanda miRanda
8383 chr2 215440491 215440491 1 + T A LUAD 215440487 + 215440467 215440507 41 TGTCATTGTCACAACGGGGACTGGTGGAAGCCTGCTCAGTG TGTCATTGTCACAACGGGGACTGGAGGAAGCCTGCTCAGTG < 41bp 0.58271469304381 0.84700760390033 0.3664017 0.40038392 prediction 0.528585821713041 Functional Gain - VWC2L ENSG00000174453 CDS Human protein_coding chr2:215440487 chr2:215440491 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_105843 0 0 0 2 215440488 215440510 mRNA hsa-miR-200a VWC2L miRanda miRanda
8384 chr14 24624527 24624527 1 + C A UCEC 24624523 + 24624503 24624543 41 ACAGTTGCTCAGCTACTTCTCTACCCTTGACATCCAGGTAC ACAGTTGCTCAGCTACTTCTCTACACTTGACATCCAGGTAC < 41bp 0.339352251580385 0.764005371708405 0.21449298 0.18133679 prediction 0.528010743416809 Functional Gain - RNF31 ENSG00000092098;ENSG00000259529 CDS Human other chr14:24624523 chr14:24624527 synonymous SNV . 0 25 hm5C_associated_SNPs_105875 0 0 1 1 24624508 24624528 mRNA hsa-miR-379 RNF31 miRanda miRanda
8385 chr20 17950744 17950744 1 + C G rs150656271 17950743 + 17950723 17950763 41 AAGATGCTTTGCTCTGTGGACCCGTGAGCAAGCATAAGCTG AAGATGCTTTGCTCTGTGGACGCGTGAGCAAGCATAAGCTG < 41bp 0.571965343355701 0.835957307054396 0.100393206 0.40272552 prediction 0.527983927397391 Functional Gain - MGME1 ENSG00000125871 CDS Human protein_coding chr20:17950743 chr20:17950744 nonsynonymous SNV 0.110 2 22 hm5C_associated_SNPs_105876 0 0 1 2 17950741 17950763 mRNA hsa-miR-21 C20orf72 miRanda miRanda
8386 chr20 17950744 17950744 1 + C G rs150656271 17950743 + 17950723 17950763 41 AAGATGCTTTGCTCTGTGGACCCGTGAGCAAGCATAAGCTG AAGATGCTTTGCTCTGTGGACGCGTGAGCAAGCATAAGCTG < 41bp 0.571965343355701 0.835957307054396 0.100393206 0.40272552 prediction 0.527983927397391 Functional Gain - MGME1 ENSG00000125871 CDS Human protein_coding chr20:17950743 chr20:17950744 nonsynonymous SNV 0.110 2 22 hm5C_associated_SNPs_105876 0 0 1 2 17950742 17950763 mRNA hsa-miR-590-5p C20orf72 miRanda miRanda
8387 chr12 110924406 110924406 1 + T G rs146589900 110924403 + 110924383 110924423 41 CAGAAACAGCATTACCCTTGCACTACATGGCGACATCAACT CAGAAACAGCATTACCCTTGCACGACATGGCGACATCAACT < 41bp 0.381715433095086 0.763953242796532 0.37783125 0.11582336 prediction 0.527906485593064 Functional Gain - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110924403 chr12:110924406 synonymous SNV . 0 24 hm5C_associated_SNPs_105880 0 0 1 6 110924386 110924407 mRNA hsa-miR-130a C12orf24 miRanda miRanda
8388 chr12 110924406 110924406 1 + T G rs146589900 110924403 + 110924383 110924423 41 CAGAAACAGCATTACCCTTGCACTACATGGCGACATCAACT CAGAAACAGCATTACCCTTGCACGACATGGCGACATCAACT < 41bp 0.381715433095086 0.763953242796532 0.37783125 0.11582336 prediction 0.527906485593064 Functional Gain - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110924403 chr12:110924406 synonymous SNV . 0 24 hm5C_associated_SNPs_105880 0 0 1 6 110924401 110924427 mRNA hsa-miR-145 C12orf24 miRanda miRanda
8389 chr12 110924406 110924406 1 + T G rs146589900 110924403 + 110924383 110924423 41 CAGAAACAGCATTACCCTTGCACTACATGGCGACATCAACT CAGAAACAGCATTACCCTTGCACGACATGGCGACATCAACT < 41bp 0.381715433095086 0.763953242796532 0.37783125 0.11582336 prediction 0.527906485593064 Functional Gain - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110924403 chr12:110924406 synonymous SNV . 0 24 hm5C_associated_SNPs_105880 0 0 1 6 110924385 110924407 mRNA hsa-miR-301a C12orf24 miRanda miRanda
8390 chr12 110924406 110924406 1 + T G rs146589900 110924403 + 110924383 110924423 41 CAGAAACAGCATTACCCTTGCACTACATGGCGACATCAACT CAGAAACAGCATTACCCTTGCACGACATGGCGACATCAACT < 41bp 0.381715433095086 0.763953242796532 0.37783125 0.11582336 prediction 0.527906485593064 Functional Gain - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110924403 chr12:110924406 synonymous SNV . 0 24 hm5C_associated_SNPs_105880 0 0 1 6 110924386 110924407 mRNA hsa-miR-130b C12orf24 miRanda miRanda
8391 chr12 110924406 110924406 1 + T G rs146589900 110924403 + 110924383 110924423 41 CAGAAACAGCATTACCCTTGCACTACATGGCGACATCAACT CAGAAACAGCATTACCCTTGCACGACATGGCGACATCAACT < 41bp 0.381715433095086 0.763953242796532 0.37783125 0.11582336 prediction 0.527906485593064 Functional Gain - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110924403 chr12:110924406 synonymous SNV . 0 24 hm5C_associated_SNPs_105880 0 0 1 6 110924382 110924407 mRNA hsa-miR-454 C12orf24 miRanda miRanda
8392 chr12 110924406 110924406 1 + T G rs146589900 110924403 + 110924383 110924423 41 CAGAAACAGCATTACCCTTGCACTACATGGCGACATCAACT CAGAAACAGCATTACCCTTGCACGACATGGCGACATCAACT < 41bp 0.381715433095086 0.763953242796532 0.37783125 0.11582336 prediction 0.527906485593064 Functional Gain - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110924403 chr12:110924406 synonymous SNV . 0 24 hm5C_associated_SNPs_105880 0 0 1 6 110924385 110924407 mRNA hsa-miR-301b C12orf24 miRanda miRanda
8393 chr3 128623263 128623263 1 + T C LUAD 128623261 + 128623241 128623281 41 CTGATGGCTCAGAAGGCTTACGTCATGGAGAGTATGACCTA CTGATGGCTCAGAAGGCTTACGCCATGGAGAGTATGACCTA < 41bp 0.55108288754059 0.814988047331662 0.022086263 0.0131106675 prediction 0.527810319582145 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128623261 chr3:128623263 nonsynonymous SNV 0.924 1 23 hm5C_associated_SNPs_105887 0 0 1 3 128623261 128623286 mRNA hsa-let-7d ACAD9 miRanda miRanda
8394 chr3 128623263 128623263 1 + T C LUAD 128623261 + 128623241 128623281 41 CTGATGGCTCAGAAGGCTTACGTCATGGAGAGTATGACCTA CTGATGGCTCAGAAGGCTTACGCCATGGAGAGTATGACCTA < 41bp 0.55108288754059 0.814988047331662 0.022086263 0.0131106675 prediction 0.527810319582145 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128623261 chr3:128623263 nonsynonymous SNV 0.924 1 23 hm5C_associated_SNPs_105887 0 0 1 3 128623263 128623286 mRNA hsa-let-7f ACAD9 miRanda miRanda
8395 chr3 128623263 128623263 1 + T C LUAD 128623261 + 128623241 128623281 41 CTGATGGCTCAGAAGGCTTACGTCATGGAGAGTATGACCTA CTGATGGCTCAGAAGGCTTACGCCATGGAGAGTATGACCTA < 41bp 0.55108288754059 0.814988047331662 0.022086263 0.0131106675 prediction 0.527810319582145 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128623261 chr3:128623263 nonsynonymous SNV 0.924 1 23 hm5C_associated_SNPs_105887 0 0 1 3 128623263 128623286 mRNA hsa-let-7g ACAD9 miRanda miRanda
8396 chr2 66691322 66691322 1 + T C COAD 66691320 + 66691300 66691340 41 CCCTTCCAGCGGTGGCCACACGTCACACAGTGGGGACAACA CCCTTCCAGCGGTGGCCACACGCCACACAGTGGGGACAACA < 41bp 0.479312532625326 0.763588085664325 0.021641284 0.032143414 prediction 0.52717617132865 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66691320 chr2:66691322 nonsynonymous SNV 0.950 4 23 hm5C_associated_SNPs_105931 0 0 0 1 66691305 66691327 mRNA hsa-miR-210 MEIS1 miRanda miRanda
8397 chr14 19574244 19574244 1 + C G rs199722113 19574240 + 19574220 19574260 41 ATATGGGATTCCCAGAAAACCTGCCTAACGGTGCCACTGCT ATATGGGATTCCCAGAAAACCTGCGTAACGGTGCCACTGCT < 41bp 0.472821538236747 0.763348028672967 0.19638127 0.24396959 prediction 0.526696057345934 Functional Gain - POTEG ENSG00000222036 CDS Human protein_coding chr14:19574240 chr14:19574244 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_105972 0 0 0 2 19574242 19574263 mRNA hsa-miR-27a POTEG miRanda miRanda
8398 chr14 19574244 19574244 1 + C G rs199722113 19574240 + 19574220 19574260 41 ATATGGGATTCCCAGAAAACCTGCCTAACGGTGCCACTGCT ATATGGGATTCCCAGAAAACCTGCGTAACGGTGCCACTGCT < 41bp 0.472821538236747 0.763348028672967 0.19638127 0.24396959 prediction 0.526696057345934 Functional Gain - POTEG ENSG00000222036 CDS Human protein_coding chr14:19574240 chr14:19574244 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_105972 0 0 0 2 19574242 19574263 mRNA hsa-miR-27b POTEG miRanda miRanda
8399 chr2 109124356 109124356 1 + C A rs13386343 109124352 + 109124332 109124372 41 AACCACCAGGAATGAATTCACTCCCCACTTCTCTGGAACCT AACCACCAGGAATGAATTCACTCCACACTTCTCTGGAACCT < 41bp 0.360210642941954 0.76323494947684 0.19584605 0.92538 prediction 0.52646989895368 Functional Gain - GCC2-AS1 ENSG00000214184 ncRNA_intronic Human antisense chr2:109124352 chr2:109124356 . . 0 25 hm5C_associated_SNPs_105987 0 0 0 1 109124339 109124360 mRNA hsa-miR-491-5p GCC2 miRanda miRanda
8400 chr22 45255655 45255655 1 + C A rs114279873 45255651 + 45255631 45255671 41 GTCACTGGCTGCCGCCAGATCTTACGGAGCCTCCCAGAGCA GTCACTGGCTGCCGCCAGATCTTAAGGAGCCTCCCAGAGCA < 41bp 0.347297880053911 0.763139439856803 0.1877181 0.22626936 prediction 0.526278879713605 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45255651 chr22:45255655 synonymous SNV . 0 25 hm5C_associated_SNPs_106003 0 0 1 2 45255650 45255670 mRNA hsa-miR-330-5p ARHGAP8 miRanda miRanda
8401 chr22 45255655 45255655 1 + C A rs114279873 45255651 + 45255631 45255671 41 GTCACTGGCTGCCGCCAGATCTTACGGAGCCTCCCAGAGCA GTCACTGGCTGCCGCCAGATCTTAAGGAGCCTCCCAGAGCA < 41bp 0.347297880053911 0.763139439856803 0.1877181 0.22626936 prediction 0.526278879713605 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45255651 chr22:45255655 synonymous SNV . 0 25 hm5C_associated_SNPs_106003 0 0 1 2 45255651 45255670 mRNA hsa-miR-326 ARHGAP8 miRanda miRanda
8402 chr17 42826844 42826844 1 + C G rs188198587 42826843 + 42826823 42826863 41 CAAAAGAGCTAGAAGGAGGCCCGGGCCTGGCCTTTGAAGTC CAAAAGAGCTAGAAGGAGGCCGGGGCCTGGCCTTTGAAGTC < 41bp 0.573999047934119 0.837079414742629 0.32173836 0.6678392 prediction 0.526160733617022 Functional Gain - DBF4B ENSG00000161692 UTR3 Human protein_coding chr17:42826843 chr17:42826844 . . 0 22 hm5C_associated_SNPs_106016 0 0 1 1 42826844 42826867 mRNA hsa-miR-422a DBF4B miRanda miRanda
8403 chr19 42814808 42814808 1 + C G rs182146218 42814807 + 42814787 42814827 41 CCTGGACTGGAGCCCCAGCCCCCCTTCCCCACTGCCCAGCC CCTGGACTGGAGCCCCAGCCCGCCTTCCCCACTGCCCAGCC < 41bp 0.582766281297736 0.845741261582864 0.045763195 0.05645442 prediction 0.525949960570256 Functional Gain - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814807 chr19:42814808 synonymous SNV . 0 22 hm5C_associated_SNPs_106030 0 0 0 6 42814802 42814823 mRNA hsa-miR-34a PRR19 miRanda miRanda
8404 chr19 42814808 42814808 1 + C G rs182146218 42814807 + 42814787 42814827 41 CCTGGACTGGAGCCCCAGCCCCCCTTCCCCACTGCCCAGCC CCTGGACTGGAGCCCCAGCCCGCCTTCCCCACTGCCCAGCC < 41bp 0.582766281297736 0.845741261582864 0.045763195 0.05645442 prediction 0.525949960570256 Functional Gain - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814807 chr19:42814808 synonymous SNV . 0 22 hm5C_associated_SNPs_106030 0 0 0 6 42814801 42814823 mRNA hsa-miR-34c-5p PRR19 miRanda miRanda
8405 chr19 42814808 42814808 1 + C G rs182146218 42814807 + 42814787 42814827 41 CCTGGACTGGAGCCCCAGCCCCCCTTCCCCACTGCCCAGCC CCTGGACTGGAGCCCCAGCCCGCCTTCCCCACTGCCCAGCC < 41bp 0.582766281297736 0.845741261582864 0.045763195 0.05645442 prediction 0.525949960570256 Functional Gain - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814807 chr19:42814808 synonymous SNV . 0 22 hm5C_associated_SNPs_106030 0 0 0 6 42814802 42814823 mRNA hsa-miR-449a PRR19 miRanda miRanda
8406 chr19 42814808 42814808 1 + C G rs182146218 42814807 + 42814787 42814827 41 CCTGGACTGGAGCCCCAGCCCCCCTTCCCCACTGCCCAGCC CCTGGACTGGAGCCCCAGCCCGCCTTCCCCACTGCCCAGCC < 41bp 0.582766281297736 0.845741261582864 0.045763195 0.05645442 prediction 0.525949960570256 Functional Gain - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814807 chr19:42814808 synonymous SNV . 0 22 hm5C_associated_SNPs_106030 0 0 0 6 42814808 42814830 mRNA hsa-miR-485-5p PRR19 miRanda miRanda
8407 chr19 42814808 42814808 1 + C G rs182146218 42814807 + 42814787 42814827 41 CCTGGACTGGAGCCCCAGCCCCCCTTCCCCACTGCCCAGCC CCTGGACTGGAGCCCCAGCCCGCCTTCCCCACTGCCCAGCC < 41bp 0.582766281297736 0.845741261582864 0.045763195 0.05645442 prediction 0.525949960570256 Functional Gain - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814807 chr19:42814808 synonymous SNV . 0 22 hm5C_associated_SNPs_106030 0 0 0 6 42814798 42814819 mRNA hsa-miR-491-5p PRR19 miRanda miRanda
8408 chr19 42814808 42814808 1 + C G rs182146218 42814807 + 42814787 42814827 41 CCTGGACTGGAGCCCCAGCCCCCCTTCCCCACTGCCCAGCC CCTGGACTGGAGCCCCAGCCCGCCTTCCCCACTGCCCAGCC < 41bp 0.582766281297736 0.845741261582864 0.045763195 0.05645442 prediction 0.525949960570256 Functional Gain - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814807 chr19:42814808 synonymous SNV . 0 22 hm5C_associated_SNPs_106030 0 0 0 6 42814802 42814823 mRNA hsa-miR-449b PRR19 miRanda miRanda
8409 chr12 3701496 3701496 1 + T C COAD 3701494 + 3701474 3701514 41 GAAATCTACGGGACCATATCCATGAAGCCAAATGCCAAAAA GAAATCTACGGGACCATATCCACGAAGCCAAATGCCAAAAA < 41bp 0.54709791965624 0.810015960974221 0.25246644 0.4443303 prediction 0.525836082635962 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3701494 chr12:3701496 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106039 0 0 0 4 3701490 3701512 mRNA hsa-miR-96 PRMT8 miRanda miRanda
8410 chr12 3701496 3701496 1 + T C COAD 3701494 + 3701474 3701514 41 GAAATCTACGGGACCATATCCATGAAGCCAAATGCCAAAAA GAAATCTACGGGACCATATCCACGAAGCCAAATGCCAAAAA < 41bp 0.54709791965624 0.810015960974221 0.25246644 0.4443303 prediction 0.525836082635962 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3701494 chr12:3701496 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106039 0 0 0 4 3701489 3701512 mRNA hsa-miR-182 PRMT8 miRanda miRanda
8411 chr12 3701496 3701496 1 + T C COAD 3701494 + 3701474 3701514 41 GAAATCTACGGGACCATATCCATGAAGCCAAATGCCAAAAA GAAATCTACGGGACCATATCCACGAAGCCAAATGCCAAAAA < 41bp 0.54709791965624 0.810015960974221 0.25246644 0.4443303 prediction 0.525836082635962 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3701494 chr12:3701496 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106039 0 0 0 4 3701477 3701499 mRNA hsa-miR-433 PRMT8 miRanda miRanda
8412 chr12 3701496 3701496 1 + T C COAD 3701494 + 3701474 3701514 41 GAAATCTACGGGACCATATCCATGAAGCCAAATGCCAAAAA GAAATCTACGGGACCATATCCACGAAGCCAAATGCCAAAAA < 41bp 0.54709791965624 0.810015960974221 0.25246644 0.4443303 prediction 0.525836082635962 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3701494 chr12:3701496 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106039 0 0 0 4 3701491 3701512 mRNA hsa-miR-1271 PRMT8 miRanda miRanda
8413 chr22 43011303 43011303 1 + C G rs549604353 43011302 + 43011282 43011322 41 ATTCGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACG ATTCGGGGTGACGCCCGAATCGTCACTGCTAATGTGAGACG < 41bp 0.550293544417949 0.813076693420486 0.022140801 0.013613284 prediction 0.525566298005074 Functional Gain - RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011302 chr22:43011303 . . 0 22 hm5C_associated_SNPs_106070 0 0 1 5 43011300 43011319 lncRNA hsa-miR-130a-5p Z93241.1 miRanda starBase2
8414 chr22 43011303 43011303 1 + C G rs549604353 43011302 + 43011282 43011322 41 ATTCGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACG ATTCGGGGTGACGCCCGAATCGTCACTGCTAATGTGAGACG < 41bp 0.550293544417949 0.813076693420486 0.022140801 0.013613284 prediction 0.525566298005074 Functional Gain - RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011302 chr22:43011303 . . 0 22 hm5C_associated_SNPs_106070 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23a-3p Z93241.1 miRanda starBase2
8415 chr22 43011303 43011303 1 + C G rs549604353 43011302 + 43011282 43011322 41 ATTCGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACG ATTCGGGGTGACGCCCGAATCGTCACTGCTAATGTGAGACG < 41bp 0.550293544417949 0.813076693420486 0.022140801 0.013613284 prediction 0.525566298005074 Functional Gain - RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011302 chr22:43011303 . . 0 22 hm5C_associated_SNPs_106070 0 0 1 5 43011296 43011319 lncRNA hsa-miR-23b-3p Z93241.1 miRanda starBase2
8416 chr22 43011303 43011303 1 + C G rs549604353 43011302 + 43011282 43011322 41 ATTCGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACG ATTCGGGGTGACGCCCGAATCGTCACTGCTAATGTGAGACG < 41bp 0.550293544417949 0.813076693420486 0.022140801 0.013613284 prediction 0.525566298005074 Functional Gain - RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011302 chr22:43011303 . . 0 22 hm5C_associated_SNPs_106070 0 0 1 5 43011298 43011319 lncRNA hsa-miR-23c Z93241.1 miRanda starBase2
8417 chr22 43011303 43011303 1 + C G rs549604353 43011302 + 43011282 43011322 41 ATTCGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACG ATTCGGGGTGACGCCCGAATCGTCACTGCTAATGTGAGACG < 41bp 0.550293544417949 0.813076693420486 0.022140801 0.013613284 prediction 0.525566298005074 Functional Gain - RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011302 chr22:43011303 . . 0 22 hm5C_associated_SNPs_106070 0 0 1 5 43011293 43011314 lncRNA hsa-miR-374b-3p Z93241.1 miRanda starBase2
8418 chr5 173011616 173011616 1 + T A rs735058 173011612 + 173011592 173011632 41 TTGAAGATGGTCCCAAATTCCTTGTCACTCCCTGCATGGAG TTGAAGATGGTCCCAAATTCCTTGACACTCCCTGCATGGAG < 41bp 0.533660215710087 0.796336385685994 0.008283496 0.0061869323 prediction 0.525352339951813 Functional Gain - LOC285593 ENSG00000253955 ncRNA_exonic Human antisense chr5:173011612 chr5:173011616 . . 0 25 hm5C_associated_SNPs_106092 0 0 0 1 173011598 173011621 mRNA hsa-miR-301b LOC285593 miRanda miRanda
8419 chr6 146755842 146755842 1 + C A rs9373491 146755838 + 146755818 146755858 41 GGGCAGCTCGGTGCCCAGCTCCCCCGTGTCCGAGTCGGTGC GGGCAGCTCGGTGCCCAGCTCCCCAGTGTCCGAGTCGGTGC < 41bp 0.369122563986959 0.762599902743088 0.10231009 0.32768002 prediction 0.525199805486176 Functional Gain - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146755838 chr6:146755842 synonymous SNV . 0 25 hm5C_associated_SNPs_106113 1 0 0 2 146755837 146755860 mRNA hsa-miR-29b GRM1 miRanda miRanda
8420 chr6 146755842 146755842 1 + C A rs9373491 146755838 + 146755818 146755858 41 GGGCAGCTCGGTGCCCAGCTCCCCCGTGTCCGAGTCGGTGC GGGCAGCTCGGTGCCCAGCTCCCCAGTGTCCGAGTCGGTGC < 41bp 0.369122563986959 0.762599902743088 0.10231009 0.32768002 prediction 0.525199805486176 Functional Gain - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146755838 chr6:146755842 synonymous SNV . 0 25 hm5C_associated_SNPs_106113 1 0 0 2 146755838 146755860 mRNA hsa-miR-29c GRM1 miRanda miRanda
8421 chr12 120119183 120119183 1 + T G rs4213 120119181 + 120119161 120119201 41 CTTTGGACCAAAGCAGACTTCTTTATACGCAGCTCAGTTTC CTTTGGACCAAAGCAGACTTCTGTATACGCAGCTCAGTTTC < 41bp 0.514189262632811 0.776757077073281 0.30464873 0.4861247 prediction 0.525135628880939 Functional Gain - PRKAB1 ENSG00000111725 UTR3 Human protein_coding chr12:120119181 chr12:120119183 . . 0 23 hm5C_associated_SNPs_106122 0 0 1 1 120119167 120119188 mRNA hsa-miR-340 PRKAB1 miRanda miRanda
8422 chr1 2333744 2333744 1 + T C COAD 2333742 + 2333722 2333762 41 CCGATTCTGGTGATGTACTTCATCATGCTCTTCTGTATCAC CCGATTCTGGTGATGTACTTCACCATGCTCTTCTGTATCAC < 41bp 0.524468038726547 0.786987078403391 0.09347671 0.076699555 prediction 0.52503807935369 Functional Gain - RER1 ENSG00000157916 CDS Human protein_coding chr1:2333742 chr1:2333744 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106126 0 0 1 1 2333739 2333761 mRNA hsa-miR-383 RER1 miRanda miRanda
8423 chr1 51440093 51440093 1 + C A rs12855 51440089 + 51440069 51440109 41 CATAAGTGAAAATCTTACAACAGGCTTATGAATATATTTAA CATAAGTGAAAATCTTACAACAGGATTATGAATATATTTAA < 41bp 0.398213217788536 0.762286940112623 0.26719213 0.22347715 prediction 0.524573880225245 Functional Gain - CDKN2C ENSG00000123080 UTR3 Human protein_coding chr1:51440089 chr1:51440093 . . 0 25 hm5C_associated_SNPs_106171 0 1 1 4 51440081 51440104 mRNA hsa-miR-181a CDKN2C miRanda miRanda
8424 chr1 51440093 51440093 1 + C A rs12855 51440089 + 51440069 51440109 41 CATAAGTGAAAATCTTACAACAGGCTTATGAATATATTTAA CATAAGTGAAAATCTTACAACAGGATTATGAATATATTTAA < 41bp 0.398213217788536 0.762286940112623 0.26719213 0.22347715 prediction 0.524573880225245 Functional Gain - CDKN2C ENSG00000123080 UTR3 Human protein_coding chr1:51440089 chr1:51440093 . . 0 25 hm5C_associated_SNPs_106171 0 1 1 4 51440080 51440104 mRNA hsa-miR-181b CDKN2C miRanda miRanda
8425 chr1 51440093 51440093 1 + C A rs12855 51440089 + 51440069 51440109 41 CATAAGTGAAAATCTTACAACAGGCTTATGAATATATTTAA CATAAGTGAAAATCTTACAACAGGATTATGAATATATTTAA < 41bp 0.398213217788536 0.762286940112623 0.26719213 0.22347715 prediction 0.524573880225245 Functional Gain - CDKN2C ENSG00000123080 UTR3 Human protein_coding chr1:51440089 chr1:51440093 . . 0 25 hm5C_associated_SNPs_106171 0 1 1 4 51440081 51440104 mRNA hsa-miR-181c CDKN2C miRanda miRanda
8426 chr1 51440093 51440093 1 + C A rs12855 51440089 + 51440069 51440109 41 CATAAGTGAAAATCTTACAACAGGCTTATGAATATATTTAA CATAAGTGAAAATCTTACAACAGGATTATGAATATATTTAA < 41bp 0.398213217788536 0.762286940112623 0.26719213 0.22347715 prediction 0.524573880225245 Functional Gain - CDKN2C ENSG00000123080 UTR3 Human protein_coding chr1:51440089 chr1:51440093 . . 0 25 hm5C_associated_SNPs_106171 0 1 1 4 51440077 51440104 mRNA hsa-miR-181d CDKN2C miRanda miRanda
8427 chr4 187133384 187133384 1 + C A rs144839540 187133380 + 187133360 187133400 41 ATGGAACTCAGGGTGATGATCAGACGTGTCATTAGAACATG ATGGAACTCAGGGTGATGATCAGAAGTGTCATTAGAACATG < 41bp 0.421999028923163 0.761549205173283 0.9131375 0.8944566 prediction 0.523098410346565 Functional Gain - CYP4V2 ENSG00000164344 intronic Human protein_coding chr4:187133380 chr4:187133384 . . 0 25 hm5C_associated_SNPs_106283 0 0 1 1 187133365 187133392 mRNA hsa-miR-425 CYP4V2 miRanda miRanda
8428 chr15 22873512 22873512 1 + T G rs548126431 22873510 + 22873490 22873530 41 AAATACAAAATGTATCCAGACATGGTGGTGTGTACCTGTAG AAATACAAAATGTATCCAGACAGGGTGGTGTGTACCTGTAG < 41bp 0.455597220902549 0.76147070426451 0.2709379 0.73118067 prediction 0.52294140852902 Functional Gain - TUBGCP5 ENSG00000153575 UTR3 Human other chr15:22873510 chr15:22873512 . . 0 23 hm5C_associated_SNPs_106293 0 0 1 2 22873500 22873523 mRNA hsa-miR-362-3p TUBGCP5 miRanda miRanda
8429 chr15 22873512 22873512 1 + T G rs548126431 22873510 + 22873490 22873530 41 AAATACAAAATGTATCCAGACATGGTGGTGTGTACCTGTAG AAATACAAAATGTATCCAGACAGGGTGGTGTGTACCTGTAG < 41bp 0.455597220902549 0.76147070426451 0.2709379 0.73118067 prediction 0.52294140852902 Functional Gain - TUBGCP5 ENSG00000153575 UTR3 Human other chr15:22873510 chr15:22873512 . . 0 23 hm5C_associated_SNPs_106293 0 0 1 2 22873502 22873523 mRNA hsa-miR-329 TUBGCP5 miRanda miRanda
8430 chr21 47660784 47660784 1 + C T SKCM 47660783 + 47660763 47660803 41 CAAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCGCA CAAACACTGCGCCAAGAGCTCTTCAGCAGAAGCTCCTCGCA < 41bp 0.495769624696701 0.761307545709262 0.118138015 0.13071012 prediction 0.522615091418524 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660783 chr21:47660784 synonymous SNV . 0 22 hm5C_associated_SNPs_106326 0 0 1 4 47660779 47660800 mRNA hsa-miR-28-5p MCM3APAS miRanda miRanda
8431 chr21 47660784 47660784 1 + C T SKCM 47660783 + 47660763 47660803 41 CAAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCGCA CAAACACTGCGCCAAGAGCTCTTCAGCAGAAGCTCCTCGCA < 41bp 0.495769624696701 0.761307545709262 0.118138015 0.13071012 prediction 0.522615091418524 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660783 chr21:47660784 synonymous SNV . 0 22 hm5C_associated_SNPs_106326 0 0 1 4 47660765 47660786 mRNA hsa-miR-28-5p MCM3APAS miRanda miRanda
8432 chr21 47660784 47660784 1 + C T SKCM 47660783 + 47660763 47660803 41 CAAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCGCA CAAACACTGCGCCAAGAGCTCTTCAGCAGAAGCTCCTCGCA < 41bp 0.495769624696701 0.761307545709262 0.118138015 0.13071012 prediction 0.522615091418524 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660783 chr21:47660784 synonymous SNV . 0 22 hm5C_associated_SNPs_106326 0 0 1 4 47660778 47660800 mRNA hsa-miR-708 MCM3APAS miRanda miRanda
8433 chr21 47660784 47660784 1 + C T SKCM 47660783 + 47660763 47660803 41 CAAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCGCA CAAACACTGCGCCAAGAGCTCTTCAGCAGAAGCTCCTCGCA < 41bp 0.495769624696701 0.761307545709262 0.118138015 0.13071012 prediction 0.522615091418524 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660783 chr21:47660784 synonymous SNV . 0 22 hm5C_associated_SNPs_106326 0 0 1 4 47660764 47660786 mRNA hsa-miR-708 MCM3APAS miRanda miRanda
8434 chr5 108281869 108281869 1 + T C UCEC 108281867 + 108281847 108281887 41 TATCCAAATTTGAATCTATTCGTCATTCAATTGCTGGAATA TATCCAAATTTGAATCTATTCGCCATTCAATTGCTGGAATA < 41bp 0.535526986807159 0.796628718262433 0.010153055 0.040229708 prediction 0.522203462910547 Functional Gain - FER ENSG00000151422 CDS Human protein_coding chr5:108281867 chr5:108281869 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_106349 0 0 1 1 108281863 108281884 mRNA hsa-miR-338-3p FER miRanda miRanda
8435 chr1 154296875 154296875 1 + T A OV 154296871 + 154296851 154296891 41 CCACCCTGAGGGCCCAGAGCCAGCTCAGGATCTGGTGTCTG CCACCCTGAGGGCCCAGAGCCAGCACAGGATCTGGTGTCTG < 41bp 0.454476436523482 0.760786113312341 0.30397448 0.29149768 prediction 0.521572226624683 Functional Gain - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154296871 chr1:154296875 synonymous SNV . 0 25 hm5C_associated_SNPs_106393 0 0 0 1 154296873 154296894 mRNA hsa-miR-16 AQP10 miRanda miRanda
8436 chr9 4664516 4664516 1 + C G rs184013366 4664515 + 4664495 4664535 41 CTGTTCATCCATGGTGCCTCCCCAAATCATAAGACCAAAGA CTGTTCATCCATGGTGCCTCCGCAAATCATAAGACCAAAGA < 41bp 0.526149998167019 0.78693139986588 0.013239771 0.02694267 prediction 0.521562803397722 Functional Gain - PLPP6 ENSG00000205808 UTR3 Human protein_coding chr9:4664515 chr9:4664516 . . 0 22 hm5C_associated_SNPs_106396 0 0 1 1 4664513 4664535 mRNA hsa-miR-9 PPAPDC2 miRanda miRanda
8437 chr10 99512859 99512859 1 + T C COAD 99512857 + 99512837 99512877 41 GCCCTGCAGGACAACGGGTTCCTGAGCAAGAATGAGGTGCT GCCCTGCAGGACAACGGGTTCCCGAGCAAGAATGAGGTGCT < 41bp 0.497892537473271 0.760624060527295 0.24161655 0.3255493 prediction 0.521248121054589 Functional Gain - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99512857 chr10:99512859 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_106421 0 0 1 1 99512842 99512861 mRNA hsa-miR-873 ZFYVE27 miRanda miRanda
8438 chr6 50682991 50682991 1 + C A LUSC 50682987 + 50682967 50683007 41 TTCTCCACTAACCACCAGTACACCCCGCTCCACCACCAGTC TTCTCCACTAACCACCAGTACACCACGCTCCACCACCAGTC < 41bp 0.328486542741592 0.760497066694422 0.07542315 0.21004355 prediction 0.520994133388843 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50682987 chr6:50682991 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_106442 0 0 0 1 50682990 50683013 mRNA hsa-miR-7 TFAP2D miRanda miRanda
8439 chr16 67672509 67672509 1 + C G rs117676849 67672505 + 67672485 67672525 41 GCAGAATGGCACCCAGACCACTGCCCACCAGTGACGGACAT GCAGAATGGCACCCAGACCACTGCGCACCAGTGACGGACAT < 41bp 0.492266063952008 0.760121654404492 0.06694335 0.054595858 prediction 0.520243308808984 Functional Gain - CTCF ENSG00000102974 UTR3 Human protein_coding chr16:67672505 chr16:67672509 . . 0 25 hm5C_associated_SNPs_106496 0 0 1 4 67672489 67672510 mRNA hsa-miR-34a CTCF miRanda miRanda
8440 chr16 67672509 67672509 1 + C G rs117676849 67672505 + 67672485 67672525 41 GCAGAATGGCACCCAGACCACTGCCCACCAGTGACGGACAT GCAGAATGGCACCCAGACCACTGCGCACCAGTGACGGACAT < 41bp 0.492266063952008 0.760121654404492 0.06694335 0.054595858 prediction 0.520243308808984 Functional Gain - CTCF ENSG00000102974 UTR3 Human protein_coding chr16:67672505 chr16:67672509 . . 0 25 hm5C_associated_SNPs_106496 0 0 1 4 67672487 67672510 mRNA hsa-miR-34c-5p CTCF miRanda miRanda
8441 chr16 67672509 67672509 1 + C G rs117676849 67672505 + 67672485 67672525 41 GCAGAATGGCACCCAGACCACTGCCCACCAGTGACGGACAT GCAGAATGGCACCCAGACCACTGCGCACCAGTGACGGACAT < 41bp 0.492266063952008 0.760121654404492 0.06694335 0.054595858 prediction 0.520243308808984 Functional Gain - CTCF ENSG00000102974 UTR3 Human protein_coding chr16:67672505 chr16:67672509 . . 0 25 hm5C_associated_SNPs_106496 0 0 1 4 67672489 67672510 mRNA hsa-miR-449a CTCF miRanda miRanda
8442 chr16 67672509 67672509 1 + C G rs117676849 67672505 + 67672485 67672525 41 GCAGAATGGCACCCAGACCACTGCCCACCAGTGACGGACAT GCAGAATGGCACCCAGACCACTGCGCACCAGTGACGGACAT < 41bp 0.492266063952008 0.760121654404492 0.06694335 0.054595858 prediction 0.520243308808984 Functional Gain - CTCF ENSG00000102974 UTR3 Human protein_coding chr16:67672505 chr16:67672509 . . 0 25 hm5C_associated_SNPs_106496 0 0 1 4 67672489 67672510 mRNA hsa-miR-449b CTCF miRanda miRanda
8443 chr13 44466616 44466616 1 + T A rs548407129 44466612 + 44466592 44466632 41 ACTCTAAGATTTCTGCTTGGCTGCTTACCAAGATTGGCAAC ACTCTAAGATTTCTGCTTGGCTGCATACCAAGATTGGCAAC < 41bp 0.561747561107587 0.821075456986188 0.02490154 0.09314838 prediction 0.518655791757203 Functional Gain - LACC1 ENSG00000179630 UTR3 Human protein_coding chr13:44466612 chr13:44466616 . . 0 25 hm5C_associated_SNPs_106627 0 0 0 3 44466594 44466617 mRNA hsa-miR-29a C13orf31 miRanda miRanda
8444 chr13 44466616 44466616 1 + T A rs548407129 44466612 + 44466592 44466632 41 ACTCTAAGATTTCTGCTTGGCTGCTTACCAAGATTGGCAAC ACTCTAAGATTTCTGCTTGGCTGCATACCAAGATTGGCAAC < 41bp 0.561747561107587 0.821075456986188 0.02490154 0.09314838 prediction 0.518655791757203 Functional Gain - LACC1 ENSG00000179630 UTR3 Human protein_coding chr13:44466612 chr13:44466616 . . 0 25 hm5C_associated_SNPs_106627 0 0 0 3 44466593 44466617 mRNA hsa-miR-29b C13orf31 miRanda miRanda
8445 chr13 44466616 44466616 1 + T A rs548407129 44466612 + 44466592 44466632 41 ACTCTAAGATTTCTGCTTGGCTGCTTACCAAGATTGGCAAC ACTCTAAGATTTCTGCTTGGCTGCATACCAAGATTGGCAAC < 41bp 0.561747561107587 0.821075456986188 0.02490154 0.09314838 prediction 0.518655791757203 Functional Gain - LACC1 ENSG00000179630 UTR3 Human protein_coding chr13:44466612 chr13:44466616 . . 0 25 hm5C_associated_SNPs_106627 0 0 0 3 44466594 44466617 mRNA hsa-miR-29c C13orf31 miRanda miRanda
8446 chr1 212793940 212793940 1 + T G rs180985365 212793937 + 212793917 212793957 41 CAGCTGTGAGAAGTCACTCACACTGGCCACAAGGACGCTGG CAGCTGTGAGAAGTCACTCACACGGGCCACAAGGACGCTGG < 41bp 0.447463111327548 0.759070934368447 0.11295828 0.4144473 prediction 0.518141868736893 Functional Gain - ATF3 ENSG00000162772 UTR3 Human protein_coding chr1:212793937 chr1:212793940 . . 0 24 hm5C_associated_SNPs_106671 0 0 1 2 212793920 212793943 mRNA hsa-miR-199a-5p ATF3 miRanda miRanda
8447 chr1 212793940 212793940 1 + T G rs180985365 212793937 + 212793917 212793957 41 CAGCTGTGAGAAGTCACTCACACTGGCCACAAGGACGCTGG CAGCTGTGAGAAGTCACTCACACGGGCCACAAGGACGCTGG < 41bp 0.447463111327548 0.759070934368447 0.11295828 0.4144473 prediction 0.518141868736893 Functional Gain - ATF3 ENSG00000162772 UTR3 Human protein_coding chr1:212793937 chr1:212793940 . . 0 24 hm5C_associated_SNPs_106671 0 0 1 2 212793921 212793943 mRNA hsa-miR-199b-5p ATF3 miRanda miRanda
8448 chr8 39840251 39840251 1 + C A LUAD 39840247 + 39840227 39840267 41 CCCTCCTATCCTGGTCCACTCAGACTTGGTGCTGACGAACT CCCTCCTATCCTGGTCCACTCAGAATTGGTGCTGACGAACT < 41bp 0.354162227187242 0.758943241539807 0.14176741 0.46745548 prediction 0.517886483079615 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39840247 chr8:39840251 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_106696 0 0 0 4 39840237 39840260 mRNA hsa-miR-29a IDO2 miRanda miRanda
8449 chr8 39840251 39840251 1 + C A LUAD 39840247 + 39840227 39840267 41 CCCTCCTATCCTGGTCCACTCAGACTTGGTGCTGACGAACT CCCTCCTATCCTGGTCCACTCAGAATTGGTGCTGACGAACT < 41bp 0.354162227187242 0.758943241539807 0.14176741 0.46745548 prediction 0.517886483079615 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39840247 chr8:39840251 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_106696 0 0 0 4 39840233 39840260 mRNA hsa-miR-29b IDO2 miRanda miRanda
8450 chr8 39840251 39840251 1 + C A LUAD 39840247 + 39840227 39840267 41 CCCTCCTATCCTGGTCCACTCAGACTTGGTGCTGACGAACT CCCTCCTATCCTGGTCCACTCAGAATTGGTGCTGACGAACT < 41bp 0.354162227187242 0.758943241539807 0.14176741 0.46745548 prediction 0.517886483079615 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39840247 chr8:39840251 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_106696 0 0 0 4 39840246 39840271 mRNA hsa-miR-145 IDO2 miRanda miRanda
8451 chr8 39840251 39840251 1 + C A LUAD 39840247 + 39840227 39840267 41 CCCTCCTATCCTGGTCCACTCAGACTTGGTGCTGACGAACT CCCTCCTATCCTGGTCCACTCAGAATTGGTGCTGACGAACT < 41bp 0.354162227187242 0.758943241539807 0.14176741 0.46745548 prediction 0.517886483079615 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39840247 chr8:39840251 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_106696 0 0 0 4 39840237 39840260 mRNA hsa-miR-29c IDO2 miRanda miRanda
8452 chr12 50157147 50157147 1 + T G rs3782324 50157144 + 50157124 50157164 41 GGAAAGAAGTTCAGTGGTCCCATTGTTAACTCAGCCTCAAA GGAAAGAAGTTCAGTGGTCCCATGGTTAACTCAGCCTCAAA < 41bp 0.365894116300423 0.758813228046218 0.041101277 0.27360433 prediction 0.517626456092436 Functional Gain - TMBIM6 ENSG00000139644 UTR3 Human protein_coding chr12:50157144 chr12:50157147 . . 0 24 hm5C_associated_SNPs_106704 0 0 1 1 50157143 50157162 mRNA hsa-miR-485-5p TMBIM6 miRanda miRanda
8453 chrX 41586424 41586424 1 + T C STAD 41586422 + 41586402 41586442 41 AACAAAAATAGGTAAAAAAACATCAACGCACATCTACCTGT AACAAAAATAGGTAAAAAAACACCAACGCACATCTACCTGT < 41bp 0.523987872694527 0.782677965114532 0.06567678 0.09170461 prediction 0.51738018484001 Functional Gain - GPR82 ENSG00000171657 CDS Human protein_coding chrX:41586422 chrX:41586424 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_106728 0 0 0 3 41586414 41586434 mRNA hsa-miR-210 GPR82 miRanda miRanda
8454 chrX 41586424 41586424 1 + T C STAD 41586422 + 41586402 41586442 41 AACAAAAATAGGTAAAAAAACATCAACGCACATCTACCTGT AACAAAAATAGGTAAAAAAACACCAACGCACATCTACCTGT < 41bp 0.523987872694527 0.782677965114532 0.06567678 0.09170461 prediction 0.51738018484001 Functional Gain - GPR82 ENSG00000171657 CDS Human protein_coding chrX:41586422 chrX:41586424 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_106728 0 0 0 3 41586413 41586434 mRNA hsa-miR-218 GPR82 miRanda miRanda
8455 chrX 41586424 41586424 1 + T C STAD 41586422 + 41586402 41586442 41 AACAAAAATAGGTAAAAAAACATCAACGCACATCTACCTGT AACAAAAATAGGTAAAAAAACACCAACGCACATCTACCTGT < 41bp 0.523987872694527 0.782677965114532 0.06567678 0.09170461 prediction 0.51738018484001 Functional Gain - GPR82 ENSG00000171657 CDS Human protein_coding chrX:41586422 chrX:41586424 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_106728 0 0 0 3 41586420 41586442 mRNA hsa-miR-125a-3p GPR82 miRanda miRanda
8456 chr1 107600578 107600578 1 + C G SARC 107600577 + 107600557 107600597 41 GCAAGTAGGGGGAATATCTCCCCCTTTTCCCTCATAGCCTC GCAAGTAGGGGGAATATCTCCGCCTTTTCCCTCATAGCCTC < 41bp 0.573217194869294 0.831905308675251 0.023917377 0.047438085 prediction 0.517376227611912 Functional Gain - PRMT6 ENSG00000198890 UTR3 Human protein_coding chr1:107600577 chr1:107600578 . . 0 22 hm5C_associated_SNPs_106729 0 0 1 1 107600577 107600598 mRNA hsa-miR-202 PRMT6 miRanda miRanda
8457 chr9 35660929 35660929 1 + C G HNSC 35660925 + 35660905 35660945 41 AACTGGAACATTCCTGATCTCTCCCCACACAGAGGCCAGCA AACTGGAACATTCCTGATCTCTCCGCACACAGAGGCCAGCA < 41bp 0.484585063727341 0.758545814185793 0.077665 0.09695521 prediction 0.517091628371585 Functional Gain - CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660925 chr9:35660929 synonymous SNV . 0 25 hm5C_associated_SNPs_106750 0 0 0 3 35660921 35660944 mRNA hsa-miR-149 CCDC107 miRanda miRanda
8458 chr9 35660929 35660929 1 + C G HNSC 35660925 + 35660905 35660945 41 AACTGGAACATTCCTGATCTCTCCCCACACAGAGGCCAGCA AACTGGAACATTCCTGATCTCTCCGCACACAGAGGCCAGCA < 41bp 0.484585063727341 0.758545814185793 0.077665 0.09695521 prediction 0.517091628371585 Functional Gain - CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660925 chr9:35660929 synonymous SNV . 0 25 hm5C_associated_SNPs_106750 0 0 0 3 35660906 35660929 mRNA hsa-miR-185 CCDC107 miRanda miRanda
8459 chr9 35660929 35660929 1 + C G HNSC 35660925 + 35660905 35660945 41 AACTGGAACATTCCTGATCTCTCCCCACACAGAGGCCAGCA AACTGGAACATTCCTGATCTCTCCGCACACAGAGGCCAGCA < 41bp 0.484585063727341 0.758545814185793 0.077665 0.09695521 prediction 0.517091628371585 Functional Gain - CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660925 chr9:35660929 synonymous SNV . 0 25 hm5C_associated_SNPs_106750 0 0 0 3 35660912 35660933 mRNA hsa-miR-491-5p CCDC107 miRanda miRanda
8460 chr10 124216494 124216494 1 + T G rs150019974 124216492 + 124216472 124216512 41 AAAAGCCAACTGGAGCTTCTCATCAGCATCAATGTGAAGCC AAAAGCCAACTGGAGCTTCTCAGCAGCATCAATGTGAAGCC < 41bp 0.590419163091333 0.848802210873917 0.10493189 0.8554505 prediction 0.516766095565168 Functional Gain - ARMS2 ENSG00000254636 UTR3 Human protein_coding chr10:124216492 chr10:124216494 . . 0 23 hm5C_associated_SNPs_106778 0 0 0 2 124216489 124216509 mRNA hsa-miR-23a ARMS2 miRanda miRanda
8461 chr10 124216494 124216494 1 + T G rs150019974 124216492 + 124216472 124216512 41 AAAAGCCAACTGGAGCTTCTCATCAGCATCAATGTGAAGCC AAAAGCCAACTGGAGCTTCTCAGCAGCATCAATGTGAAGCC < 41bp 0.590419163091333 0.848802210873917 0.10493189 0.8554505 prediction 0.516766095565168 Functional Gain - ARMS2 ENSG00000254636 UTR3 Human protein_coding chr10:124216492 chr10:124216494 . . 0 23 hm5C_associated_SNPs_106778 0 0 0 2 124216489 124216509 mRNA hsa-miR-23b ARMS2 miRanda miRanda
8462 chr4 22820531 22820531 1 + T G COAD 22820529 + 22820509 22820549 41 AGATCATCCGAAACAATGGCCTTGAAGCACATCTGTAGGCA AGATCATCCGAAACAATGGCCTGGAAGCACATCTGTAGGCA < 41bp 0.604533116698237 0.862874088982817 0.0873366 0.20518568 prediction 0.51668194456916 Functional Gain - GBA3 ENSG00000249948 CDS Human polymorphic_pseudogene chr4:22820529 chr4:22820531 unknown . 0 23 hm5C_associated_SNPs_106789 0 0 0 1 22820520 22820540 mRNA hsa-miR-218 GBA3 miRanda miRanda
8463 chr1 148932902 148932902 1 + C A HNSC 148932898 + 148932878 148932918 41 TGAGGTACAGGCTCAGTCTGCGGCCAAGACTCCGTCCTGCA TGAGGTACAGGCTCAGTCTGCGGCAAAGACTCCGTCCTGCA < 41bp 0.655190086971787 0.913048228573976 0.62449986 0.5513727 prediction 0.515716283204379 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932898 chr1:148932902 . . 0 25 hm5C_associated_SNPs_106879 0 0 0 1 148932894 148932915 mRNA hsa-miR-184 LOC645166 miRanda miRanda
8464 chr11 6415726 6415726 1 + T G GBM 6415724 + 6415704 6415744 41 CGCCCTGCCGTCTGGCTACTCTTTGTGCCCAGCTCTCTGCC CGCCCTGCCGTCTGGCTACTCTGTGTGCCCAGCTCTCTGCC < 41bp 0.415218880061198 0.757848579998993 0.17650858 0.16317749 prediction 0.515697159997987 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6415724 chr11:6415726 synonymous SNV . 0 23 hm5C_associated_SNPs_106881 0 0 1 1 6415724 6415745 mRNA hsa-miR-31 SMPD1 miRanda miRanda
8465 chr12 124799642 124799642 1 + C A rs4765540 124799638 + 124799618 124799658 41 GAGCTGTGGCTGAGCCACCTCTGGCGGATGTTGAGCCAGGA GAGCTGTGGCTGAGCCACCTCTGGAGGATGTTGAGCCAGGA < 41bp 0.642660355526476 0.900362740308446 0.30578306 0.52373046 prediction 0.515404769563939 Functional Gain - RFLNA ENSG00000178882 UTR3 Human protein_coding chr12:124799638 chr12:124799642 . . 0 25 hm5C_associated_SNPs_106909 0 1 0 1 124799635 124799657 mRNA hsa-miR-149 FAM101A miRanda miRanda
8466 chrX 79699998 79699998 1 + T A rs73223491 79699994 + 79699974 79700014 41 TTAAAACGAATGAAAATGACCAGCTCTGAATGTGAAAGCTT TTAAAACGAATGAAAATGACCAGCACTGAATGTGAAAGCTT < 41bp 0.473244042205842 0.75767997828998 0.24836984 0.10204619 prediction 0.515359956579961 Functional Gain - FAM46D ENSG00000174016 UTR3 Human protein_coding chrX:79699994 chrX:79699998 . . 0 25 hm5C_associated_SNPs_106911 0 0 0 6 79699991 79700009 mRNA hsa-miR-23a FAM46D miRanda miRanda
8467 chrX 79699998 79699998 1 + T A rs73223491 79699994 + 79699974 79700014 41 TTAAAACGAATGAAAATGACCAGCTCTGAATGTGAAAGCTT TTAAAACGAATGAAAATGACCAGCACTGAATGTGAAAGCTT < 41bp 0.473244042205842 0.75767997828998 0.24836984 0.10204619 prediction 0.515359956579961 Functional Gain - FAM46D ENSG00000174016 UTR3 Human protein_coding chrX:79699994 chrX:79699998 . . 0 25 hm5C_associated_SNPs_106911 0 0 0 6 79699984 79700007 mRNA hsa-miR-181a FAM46D miRanda miRanda
8468 chrX 79699998 79699998 1 + T A rs73223491 79699994 + 79699974 79700014 41 TTAAAACGAATGAAAATGACCAGCTCTGAATGTGAAAGCTT TTAAAACGAATGAAAATGACCAGCACTGAATGTGAAAGCTT < 41bp 0.473244042205842 0.75767997828998 0.24836984 0.10204619 prediction 0.515359956579961 Functional Gain - FAM46D ENSG00000174016 UTR3 Human protein_coding chrX:79699994 chrX:79699998 . . 0 25 hm5C_associated_SNPs_106911 0 0 0 6 79699984 79700007 mRNA hsa-miR-181b FAM46D miRanda miRanda
8469 chrX 79699998 79699998 1 + T A rs73223491 79699994 + 79699974 79700014 41 TTAAAACGAATGAAAATGACCAGCTCTGAATGTGAAAGCTT TTAAAACGAATGAAAATGACCAGCACTGAATGTGAAAGCTT < 41bp 0.473244042205842 0.75767997828998 0.24836984 0.10204619 prediction 0.515359956579961 Functional Gain - FAM46D ENSG00000174016 UTR3 Human protein_coding chrX:79699994 chrX:79699998 . . 0 25 hm5C_associated_SNPs_106911 0 0 0 6 79699984 79700007 mRNA hsa-miR-181c FAM46D miRanda miRanda
8470 chrX 79699998 79699998 1 + T A rs73223491 79699994 + 79699974 79700014 41 TTAAAACGAATGAAAATGACCAGCTCTGAATGTGAAAGCTT TTAAAACGAATGAAAATGACCAGCACTGAATGTGAAAGCTT < 41bp 0.473244042205842 0.75767997828998 0.24836984 0.10204619 prediction 0.515359956579961 Functional Gain - FAM46D ENSG00000174016 UTR3 Human protein_coding chrX:79699994 chrX:79699998 . . 0 25 hm5C_associated_SNPs_106911 0 0 0 6 79699991 79700009 mRNA hsa-miR-23b FAM46D miRanda miRanda
8471 chrX 79699998 79699998 1 + T A rs73223491 79699994 + 79699974 79700014 41 TTAAAACGAATGAAAATGACCAGCTCTGAATGTGAAAGCTT TTAAAACGAATGAAAATGACCAGCACTGAATGTGAAAGCTT < 41bp 0.473244042205842 0.75767997828998 0.24836984 0.10204619 prediction 0.515359956579961 Functional Gain - FAM46D ENSG00000174016 UTR3 Human protein_coding chrX:79699994 chrX:79699998 . . 0 25 hm5C_associated_SNPs_106911 0 0 0 6 79699984 79700007 mRNA hsa-miR-181d FAM46D miRanda miRanda
8472 chr17 18110256 18110256 1 + C T CESC 18110255 + 18110235 18110275 41 CTGAAACCCAAGCGGTCCCACCGCAAGGCAGACCCTGATGC CTGAAACCCAAGCGGTCCCACTGCAAGGCAGACCCTGATGC < 41bp 0.518619208248045 0.776282196892847 0.0645636 0.082157284 prediction 0.515325977289605 Functional Gain - ALKBH5 ENSG00000091542 CDS Human protein_coding chr17:18110255 chr17:18110256 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_106917 0 0 1 1 18110246 18110268 mRNA hsa-miR-346 ALKBH5 miRanda miRanda
8473 chr1 163044208 163044208 1 + T C UCEC 163044206 + 163044186 163044226 41 GCCCAGAAGAAGATTTTCAACCTGATGGAGAAGGATTCCTA GCCCAGAAGAAGATTTTCAACCCGATGGAGAAGGATTCCTA < 41bp 0.544655525489877 0.80169594490625 0.06759751 0.07176611 prediction 0.514080838832747 Functional Gain - RGS4 ENSG00000117152 CDS Human protein_coding chr1:163044206 chr1:163044208 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_107017 0 0 0 1 163044188 163044210 mRNA hsa-miR-125a-3p RGS4 miRanda miRanda
8474 chr1 236711387 236711387 1 + T A UCEC 236711383 + 236711363 236711403 41 CACAGCCTGGAGTACAAACACAGATTTAAAGAGCTCAGCAG CACAGCCTGGAGTACAAACACAGAATTAAAGAGCTCAGCAG < 41bp 0.452899697922187 0.756877291544017 0.29901528 0.78695273 prediction 0.513754583088035 Functional Gain - LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236711383 chr1:236711387 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_107053 0 0 1 1 236711386 236711408 mRNA hsa-miR-200c LGALS8 miRanda miRanda
8475 chr15 83781599 83781599 1 + T G rs79470022 83781596 + 83781576 83781616 41 CCTCATCCTGTTCCTGGTAGCACTGCTGGCTCGTGTCCTCG CCTCATCCTGTTCCTGGTAGCACGGCTGGCTCGTGTCCTCG < 41bp 0.656905412085869 0.913676159678357 0.059400946 0.2450878 prediction 0.513541495184976 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83781596 chr15:83781599 nonsynonymous SNV 0.867 2 24 hm5C_associated_SNPs_107080 0 0 0 3 83781580 83781601 mRNA hsa-miR-148a TM6SF1 miRanda miRanda
8476 chr15 83781599 83781599 1 + T G rs79470022 83781596 + 83781576 83781616 41 CCTCATCCTGTTCCTGGTAGCACTGCTGGCTCGTGTCCTCG CCTCATCCTGTTCCTGGTAGCACGGCTGGCTCGTGTCCTCG < 41bp 0.656905412085869 0.913676159678357 0.059400946 0.2450878 prediction 0.513541495184976 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83781596 chr15:83781599 nonsynonymous SNV 0.867 2 24 hm5C_associated_SNPs_107080 0 0 0 3 83781578 83781604 mRNA hsa-miR-214 TM6SF1 miRanda miRanda
8477 chr15 83781599 83781599 1 + T G rs79470022 83781596 + 83781576 83781616 41 CCTCATCCTGTTCCTGGTAGCACTGCTGGCTCGTGTCCTCG CCTCATCCTGTTCCTGGTAGCACGGCTGGCTCGTGTCCTCG < 41bp 0.656905412085869 0.913676159678357 0.059400946 0.2450878 prediction 0.513541495184976 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83781596 chr15:83781599 nonsynonymous SNV 0.867 2 24 hm5C_associated_SNPs_107080 0 0 0 3 83781580 83781601 mRNA hsa-miR-148b TM6SF1 miRanda miRanda
8478 chr12 125621341 125621341 1 + T C CESC 125621339 + 125621319 125621359 41 CTGACTTGGTTAAGAGGATCCGTGACGCCATCCGCATGGGC CTGACTTGGTTAAGAGGATCCGCGACGCCATCCGCATGGGC < 41bp 0.537681924264802 0.794093547561309 0.29976505 0.2985087 prediction 0.512823246593013 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125621339 chr12:125621341 synonymous SNV . 0 23 hm5C_associated_SNPs_107143 0 0 0 1 125621321 125621341 mRNA hsa-miR-127-3p AACS miRanda miRanda
8479 chr4 2673963 2673963 1 + C G rs146511820 2673962 + 2673942 2673982 41 CTGGCCATCAGTTCTTGAGCCCAGAGAAGCCCACACACCCT CTGGCCATCAGTTCTTGAGCCGAGAGAAGCCCACACACCCT < 41bp 0.439997237501392 0.756332830410744 0.21569577 0.57953835 prediction 0.512665660821489 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2673962 chr4:2673963 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_107156 0 0 0 2 2673947 2673968 mRNA hsa-miR-330-5p FAM193A miRanda miRanda
8480 chr4 2673963 2673963 1 + C G rs146511820 2673962 + 2673942 2673982 41 CTGGCCATCAGTTCTTGAGCCCAGAGAAGCCCACACACCCT CTGGCCATCAGTTCTTGAGCCGAGAGAAGCCCACACACCCT < 41bp 0.439997237501392 0.756332830410744 0.21569577 0.57953835 prediction 0.512665660821489 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2673962 chr4:2673963 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_107156 0 0 0 2 2673949 2673968 mRNA hsa-miR-326 FAM193A miRanda miRanda
8481 chr8 11644438 11644438 1 + C G rs535687631 11644437 + 11644417 11644457 41 GGGACCACGGGTGTGAGCCACCGCGCCCAGCTAGCTCCTGT GGGACCACGGGTGTGAGCCACGGCGCCCAGCTAGCTCCTGT < 41bp 0.551551185743944 0.80779477306436 0.3791276 0.7141006 prediction 0.512487174640831 Functional Gain - NEIL2 ENSG00000154328 UTR3 Human protein_coding chr8:11644437 chr8:11644438 . . 0 22 hm5C_associated_SNPs_107170 0 0 1 2 11644435 11644456 mRNA hsa-miR-28-5p NEIL2 miRanda miRanda
8482 chr8 11644438 11644438 1 + C G rs535687631 11644437 + 11644417 11644457 41 GGGACCACGGGTGTGAGCCACCGCGCCCAGCTAGCTCCTGT GGGACCACGGGTGTGAGCCACGGCGCCCAGCTAGCTCCTGT < 41bp 0.551551185743944 0.80779477306436 0.3791276 0.7141006 prediction 0.512487174640831 Functional Gain - NEIL2 ENSG00000154328 UTR3 Human protein_coding chr8:11644437 chr8:11644438 . . 0 22 hm5C_associated_SNPs_107170 0 0 1 2 11644434 11644456 mRNA hsa-miR-708 NEIL2 miRanda miRanda
8483 chr10 71851628 71851628 1 + C A LUAD 71851627 + 71851607 71851647 41 AAACGATCCTCTCCCCACCCCCAGAGAAAAGAGGCAGGAAG AAACGATCCTCTCCCCACCCCAAGAGAAAAGAGGCAGGAAG < 41bp 0.491910639292811 0.756111653368533 0.19001201 0.2550624 prediction 0.512223306737065 Functional Gain - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71851627 chr10:71851628 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_107189 0 0 0 2 71851612 71851633 mRNA hsa-miR-330-5p H2AFY2 miRanda miRanda
8484 chr10 71851628 71851628 1 + C A LUAD 71851627 + 71851607 71851647 41 AAACGATCCTCTCCCCACCCCCAGAGAAAAGAGGCAGGAAG AAACGATCCTCTCCCCACCCCAAGAGAAAAGAGGCAGGAAG < 41bp 0.491910639292811 0.756111653368533 0.19001201 0.2550624 prediction 0.512223306737065 Functional Gain - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71851627 chr10:71851628 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_107189 0 0 0 2 71851614 71851633 mRNA hsa-miR-326 H2AFY2 miRanda miRanda
8485 chr4 77033594 77033594 1 + C A STAD 77033590 + 77033570 77033610 41 AAGCCATCCTTCTGCATCCTCGGGCAAACTGCTGCTTCCAC AAGCCATCCTTCTGCATCCTCGGGAAAACTGCTGCTTCCAC < 41bp 0.633979250838983 0.890062363291353 0.90943635 0.8977616 prediction 0.512166224904741 Functional Gain - ART3 ENSG00000156219 CDS Human protein_coding chr4:77033590 chr4:77033594 synonymous SNV . 0 25 hm5C_associated_SNPs_107196 0 0 0 6 77033585 77033606 mRNA hsa-miR-15a ART3 miRanda miRanda
8486 chr4 77033594 77033594 1 + C A STAD 77033590 + 77033570 77033610 41 AAGCCATCCTTCTGCATCCTCGGGCAAACTGCTGCTTCCAC AAGCCATCCTTCTGCATCCTCGGGAAAACTGCTGCTTCCAC < 41bp 0.633979250838983 0.890062363291353 0.90943635 0.8977616 prediction 0.512166224904741 Functional Gain - ART3 ENSG00000156219 CDS Human protein_coding chr4:77033590 chr4:77033594 synonymous SNV . 0 25 hm5C_associated_SNPs_107196 0 0 0 6 77033586 77033606 mRNA hsa-miR-16 ART3 miRanda miRanda
8487 chr4 77033594 77033594 1 + C A STAD 77033590 + 77033570 77033610 41 AAGCCATCCTTCTGCATCCTCGGGCAAACTGCTGCTTCCAC AAGCCATCCTTCTGCATCCTCGGGAAAACTGCTGCTTCCAC < 41bp 0.633979250838983 0.890062363291353 0.90943635 0.8977616 prediction 0.512166224904741 Functional Gain - ART3 ENSG00000156219 CDS Human protein_coding chr4:77033590 chr4:77033594 synonymous SNV . 0 25 hm5C_associated_SNPs_107196 0 0 0 6 77033585 77033606 mRNA hsa-miR-15b ART3 miRanda miRanda
8488 chr4 77033594 77033594 1 + C A STAD 77033590 + 77033570 77033610 41 AAGCCATCCTTCTGCATCCTCGGGCAAACTGCTGCTTCCAC AAGCCATCCTTCTGCATCCTCGGGAAAACTGCTGCTTCCAC < 41bp 0.633979250838983 0.890062363291353 0.90943635 0.8977616 prediction 0.512166224904741 Functional Gain - ART3 ENSG00000156219 CDS Human protein_coding chr4:77033590 chr4:77033594 synonymous SNV . 0 25 hm5C_associated_SNPs_107196 0 0 0 6 77033586 77033606 mRNA hsa-miR-195 ART3 miRanda miRanda
8489 chr4 77033594 77033594 1 + C A STAD 77033590 + 77033570 77033610 41 AAGCCATCCTTCTGCATCCTCGGGCAAACTGCTGCTTCCAC AAGCCATCCTTCTGCATCCTCGGGAAAACTGCTGCTTCCAC < 41bp 0.633979250838983 0.890062363291353 0.90943635 0.8977616 prediction 0.512166224904741 Functional Gain - ART3 ENSG00000156219 CDS Human protein_coding chr4:77033590 chr4:77033594 synonymous SNV . 0 25 hm5C_associated_SNPs_107196 0 0 0 6 77033585 77033606 mRNA hsa-miR-424 ART3 miRanda miRanda
8490 chr4 77033594 77033594 1 + C A STAD 77033590 + 77033570 77033610 41 AAGCCATCCTTCTGCATCCTCGGGCAAACTGCTGCTTCCAC AAGCCATCCTTCTGCATCCTCGGGAAAACTGCTGCTTCCAC < 41bp 0.633979250838983 0.890062363291353 0.90943635 0.8977616 prediction 0.512166224904741 Functional Gain - ART3 ENSG00000156219 CDS Human protein_coding chr4:77033590 chr4:77033594 synonymous SNV . 0 25 hm5C_associated_SNPs_107196 0 0 0 6 77033586 77033606 mRNA hsa-miR-497 ART3 miRanda miRanda
8491 chr12 11084051 11084051 1 + C G rs149577929 11084047 + 11084027 11084067 41 AGGCTCAGTCCTGCCTCACACTAGCATTTCAAGTCCAGTAT AGGCTCAGTCCTGCCTCACACTAGGATTTCAAGTCCAGTAT < 41bp 0.480039843321192 0.755874282475821 0.107468724 0.052393347 prediction 0.511748564951642 Functional Gain - PRH1-PRR4 ENSG00000134551 intronic Human protein_coding chr12:11084047 chr12:11084051 . . 0 25 hm5C_associated_SNPs_107220 0 0 0 3 11084038 11084058 mRNA hsa-miR-203 PRH2 miRanda miRanda
8492 chr12 11084051 11084051 1 + C G rs149577929 11084047 + 11084027 11084067 41 AGGCTCAGTCCTGCCTCACACTAGCATTTCAAGTCCAGTAT AGGCTCAGTCCTGCCTCACACTAGGATTTCAAGTCCAGTAT < 41bp 0.480039843321192 0.755874282475821 0.107468724 0.052393347 prediction 0.511748564951642 Functional Gain - PRH1-PRR4 ENSG00000134551 intronic Human protein_coding chr12:11084047 chr12:11084051 . . 0 25 hm5C_associated_SNPs_107220 0 0 0 3 11084045 11084065 mRNA hsa-miR-378 PRH2 miRanda miRanda
8493 chr12 11084051 11084051 1 + C G rs149577929 11084047 + 11084027 11084067 41 AGGCTCAGTCCTGCCTCACACTAGCATTTCAAGTCCAGTAT AGGCTCAGTCCTGCCTCACACTAGGATTTCAAGTCCAGTAT < 41bp 0.480039843321192 0.755874282475821 0.107468724 0.052393347 prediction 0.511748564951642 Functional Gain - PRH1-PRR4 ENSG00000134551 intronic Human protein_coding chr12:11084047 chr12:11084051 . . 0 25 hm5C_associated_SNPs_107220 0 0 0 3 11084044 11084065 mRNA hsa-miR-422a PRH2 miRanda miRanda
8494 chr1 92789806 92789806 1 + T G rs143344868 92789803 + 92789783 92789823 41 TTTAGGGGCTCAGGTACAGCCATTAAACCACTGCCAAGTTA TTTAGGGGCTCAGGTACAGCCATGAAACCACTGCCAAGTTA < 41bp 0.392423928205187 0.755825333188824 0.81000054 0.51315176 prediction 0.511650666377648 Functional Gain - RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92789803 chr1:92789806 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_107227 0 0 1 5 92789798 92789818 mRNA hsa-miR-34a RPAP2 miRanda miRanda
8495 chr1 92789806 92789806 1 + T G rs143344868 92789803 + 92789783 92789823 41 TTTAGGGGCTCAGGTACAGCCATTAAACCACTGCCAAGTTA TTTAGGGGCTCAGGTACAGCCATGAAACCACTGCCAAGTTA < 41bp 0.392423928205187 0.755825333188824 0.81000054 0.51315176 prediction 0.511650666377648 Functional Gain - RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92789803 chr1:92789806 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_107227 0 0 1 5 92789794 92789815 mRNA hsa-miR-140-5p RPAP2 miRanda miRanda
8496 chr1 92789806 92789806 1 + T G rs143344868 92789803 + 92789783 92789823 41 TTTAGGGGCTCAGGTACAGCCATTAAACCACTGCCAAGTTA TTTAGGGGCTCAGGTACAGCCATGAAACCACTGCCAAGTTA < 41bp 0.392423928205187 0.755825333188824 0.81000054 0.51315176 prediction 0.511650666377648 Functional Gain - RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92789803 chr1:92789806 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_107227 0 0 1 5 92789798 92789818 mRNA hsa-miR-34c-5p RPAP2 miRanda miRanda
8497 chr1 92789806 92789806 1 + T G rs143344868 92789803 + 92789783 92789823 41 TTTAGGGGCTCAGGTACAGCCATTAAACCACTGCCAAGTTA TTTAGGGGCTCAGGTACAGCCATGAAACCACTGCCAAGTTA < 41bp 0.392423928205187 0.755825333188824 0.81000054 0.51315176 prediction 0.511650666377648 Functional Gain - RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92789803 chr1:92789806 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_107227 0 0 1 5 92789797 92789818 mRNA hsa-miR-449a RPAP2 miRanda miRanda
8498 chr1 92789806 92789806 1 + T G rs143344868 92789803 + 92789783 92789823 41 TTTAGGGGCTCAGGTACAGCCATTAAACCACTGCCAAGTTA TTTAGGGGCTCAGGTACAGCCATGAAACCACTGCCAAGTTA < 41bp 0.392423928205187 0.755825333188824 0.81000054 0.51315176 prediction 0.511650666377648 Functional Gain - RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92789803 chr1:92789806 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_107227 0 0 1 5 92789797 92789818 mRNA hsa-miR-449b RPAP2 miRanda miRanda
8499 chr1 35251748 35251748 1 + C G rs142162514 35251747 + 35251727 35251767 41 GACTAGAGGTTCTGGAGATACCCAGAGGTCCCCCAGGTCAT GACTAGAGGTTCTGGAGATACGCAGAGGTCCCCCAGGTCAT < 41bp 0.496872528812994 0.755643365786782 0.021393508 0.07380217 prediction 0.511286731573564 Functional Gain - GJB3 ENSG00000255811 ncRNA_intronic Human antisense chr1:35251747 chr1:35251748 . . 0 22 hm5C_associated_SNPs_107256 0 0 0 2 35251736 35251754 mRNA hsa-miR-330-5p GJB3 miRanda miRanda
8500 chr1 35251748 35251748 1 + C G rs142162514 35251747 + 35251727 35251767 41 GACTAGAGGTTCTGGAGATACCCAGAGGTCCCCCAGGTCAT GACTAGAGGTTCTGGAGATACGCAGAGGTCCCCCAGGTCAT < 41bp 0.496872528812994 0.755643365786782 0.021393508 0.07380217 prediction 0.511286731573564 Functional Gain - GJB3 ENSG00000255811 ncRNA_intronic Human antisense chr1:35251747 chr1:35251748 . . 0 22 hm5C_associated_SNPs_107256 0 0 0 2 35251735 35251754 mRNA hsa-miR-326 GJB3 miRanda miRanda
8501 chr6 88362867 88362867 1 + T C LUSC 88362865 + 88362845 88362885 41 AGGATGAACTGATGACCATACTTGAGAAATGTTTCAAGGTT AGGATGAACTGATGACCATACTCGAGAAATGTTTCAAGGTT < 41bp 0.482205730292593 0.755440948780338 0.16988379 0.43746543 prediction 0.510881897560675 Functional Gain - ORC3 ENSG00000135336 CDS Human protein_coding chr6:88362865 chr6:88362867 synonymous SNV . 0 23 hm5C_associated_SNPs_107287 0 0 0 4 88362849 88362870 mRNA hsa-miR-26a ORC3L miRanda miRanda
8502 chr6 88362867 88362867 1 + T C LUSC 88362865 + 88362845 88362885 41 AGGATGAACTGATGACCATACTTGAGAAATGTTTCAAGGTT AGGATGAACTGATGACCATACTCGAGAAATGTTTCAAGGTT < 41bp 0.482205730292593 0.755440948780338 0.16988379 0.43746543 prediction 0.510881897560675 Functional Gain - ORC3 ENSG00000135336 CDS Human protein_coding chr6:88362865 chr6:88362867 synonymous SNV . 0 23 hm5C_associated_SNPs_107287 0 0 0 4 88362850 88362870 mRNA hsa-miR-26b ORC3L miRanda miRanda
8503 chr6 88362867 88362867 1 + T C LUSC 88362865 + 88362845 88362885 41 AGGATGAACTGATGACCATACTTGAGAAATGTTTCAAGGTT AGGATGAACTGATGACCATACTCGAGAAATGTTTCAAGGTT < 41bp 0.482205730292593 0.755440948780338 0.16988379 0.43746543 prediction 0.510881897560675 Functional Gain - ORC3 ENSG00000135336 CDS Human protein_coding chr6:88362865 chr6:88362867 synonymous SNV . 0 23 hm5C_associated_SNPs_107287 0 0 0 4 88362858 88362880 mRNA hsa-miR-494 ORC3L miRanda miRanda
8504 chr6 88362867 88362867 1 + T C LUSC 88362865 + 88362845 88362885 41 AGGATGAACTGATGACCATACTTGAGAAATGTTTCAAGGTT AGGATGAACTGATGACCATACTCGAGAAATGTTTCAAGGTT < 41bp 0.482205730292593 0.755440948780338 0.16988379 0.43746543 prediction 0.510881897560675 Functional Gain - ORC3 ENSG00000135336 CDS Human protein_coding chr6:88362865 chr6:88362867 synonymous SNV . 0 23 hm5C_associated_SNPs_107287 0 0 0 4 88362854 88362870 mRNA hsa-miR-1297 ORC3L miRanda miRanda
8505 chr12 120995448 120995448 1 + C T STAD 120995447 + 120995427 120995467 41 GTTGGTGGCTTTGCCCAAATCCAAATGGATGAATGTAGACC GTTGGTGGCTTTGCCCAAATCTAAATGGATGAATGTAGACC < 41bp 0.506982656897715 0.762187946124789 0.22745144 0.19723183 prediction 0.510410578454147 Functional Gain - RNF10 ENSG00000022840 CDS Human protein_coding chr12:120995447 chr12:120995448 synonymous SNV . 0 22 hm5C_associated_SNPs_107330 0 0 1 4 120995441 120995463 mRNA hsa-miR-181a RNF10 miRanda miRanda
8506 chr12 120995448 120995448 1 + C T STAD 120995447 + 120995427 120995467 41 GTTGGTGGCTTTGCCCAAATCCAAATGGATGAATGTAGACC GTTGGTGGCTTTGCCCAAATCTAAATGGATGAATGTAGACC < 41bp 0.506982656897715 0.762187946124789 0.22745144 0.19723183 prediction 0.510410578454147 Functional Gain - RNF10 ENSG00000022840 CDS Human protein_coding chr12:120995447 chr12:120995448 synonymous SNV . 0 22 hm5C_associated_SNPs_107330 0 0 1 4 120995441 120995463 mRNA hsa-miR-181b RNF10 miRanda miRanda
8507 chr12 120995448 120995448 1 + C T STAD 120995447 + 120995427 120995467 41 GTTGGTGGCTTTGCCCAAATCCAAATGGATGAATGTAGACC GTTGGTGGCTTTGCCCAAATCTAAATGGATGAATGTAGACC < 41bp 0.506982656897715 0.762187946124789 0.22745144 0.19723183 prediction 0.510410578454147 Functional Gain - RNF10 ENSG00000022840 CDS Human protein_coding chr12:120995447 chr12:120995448 synonymous SNV . 0 22 hm5C_associated_SNPs_107330 0 0 1 4 120995442 120995463 mRNA hsa-miR-181c RNF10 miRanda miRanda
8508 chr12 120995448 120995448 1 + C T STAD 120995447 + 120995427 120995467 41 GTTGGTGGCTTTGCCCAAATCCAAATGGATGAATGTAGACC GTTGGTGGCTTTGCCCAAATCTAAATGGATGAATGTAGACC < 41bp 0.506982656897715 0.762187946124789 0.22745144 0.19723183 prediction 0.510410578454147 Functional Gain - RNF10 ENSG00000022840 CDS Human protein_coding chr12:120995447 chr12:120995448 synonymous SNV . 0 22 hm5C_associated_SNPs_107330 0 0 1 4 120995441 120995463 mRNA hsa-miR-181d RNF10 miRanda miRanda
8509 chr10 12200045 12200045 1 + C G SKCM 12200044 + 12200024 12200064 41 TCCAACCTGTATGTTATTTCCCAGATGCTGTCTGTTCGATT TCCAACCTGTATGTTATTTCCGAGATGCTGTCTGTTCGATT < 41bp 0.597166536485271 0.852345130312461 0.12745413 0.45509568 prediction 0.510357187654381 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12200044 chr10:12200045 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_107336 0 0 1 1 12200040 12200063 mRNA hsa-miR-421 SEC61A2 miRanda miRanda
8510 chr11 3405445 3405445 1 + C A LUAD 3405444 + 3405424 3405464 41 CTACAGTTCCTGTCCCATGACCAGGGCCAGATCACCAAGGA CTACAGTTCCTGTCCCATGACAAGGGCCAGATCACCAAGGA < 41bp 0.509587899991754 0.764651051482822 0.55319065 0.2990973 prediction 0.510126302982135 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3405444 chr11:3405445 . . 0 22 hm5C_associated_SNPs_107361 0 0 1 2 3405432 3405453 mRNA hsa-miR-328 LOC650368 miRanda miRanda
8511 chr11 3405445 3405445 1 + C A LUAD 3405444 + 3405424 3405464 41 CTACAGTTCCTGTCCCATGACCAGGGCCAGATCACCAAGGA CTACAGTTCCTGTCCCATGACAAGGGCCAGATCACCAAGGA < 41bp 0.509587899991754 0.764651051482822 0.55319065 0.2990973 prediction 0.510126302982135 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3405444 chr11:3405445 . . 0 22 hm5C_associated_SNPs_107361 0 0 1 2 3405424 3405450 mRNA hsa-miR-339-5p LOC650368 miRanda miRanda
8512 chr8 11644438 11644438 1 + C G rs535687631 11644434 + 11644414 11644454 41 GTTGGGACCACGGGTGTGAGCCACCGCGCCCAGCTAGCTCC GTTGGGACCACGGGTGTGAGCCACGGCGCCCAGCTAGCTCC < 41bp 0.479798029920999 0.75483072032563 0.082710326 0.30802536 prediction 0.509661440651261 Functional Gain - NEIL2 ENSG00000154328 UTR3 Human protein_coding chr8:11644434 chr8:11644438 . . 0 25 hm5C_associated_SNPs_107398 0 0 1 2 11644435 11644456 mRNA hsa-miR-28-5p NEIL2 miRanda miRanda
8513 chr8 11644438 11644438 1 + C G rs535687631 11644434 + 11644414 11644454 41 GTTGGGACCACGGGTGTGAGCCACCGCGCCCAGCTAGCTCC GTTGGGACCACGGGTGTGAGCCACGGCGCCCAGCTAGCTCC < 41bp 0.479798029920999 0.75483072032563 0.082710326 0.30802536 prediction 0.509661440651261 Functional Gain - NEIL2 ENSG00000154328 UTR3 Human protein_coding chr8:11644434 chr8:11644438 . . 0 25 hm5C_associated_SNPs_107398 0 0 1 2 11644434 11644456 mRNA hsa-miR-708 NEIL2 miRanda miRanda
8514 chr11 105804547 105804547 1 + C G LUAD 105804546 + 105804526 105804566 41 GCTGAGGGAGTAGCTCGTGTCCGCAAATCCAAGGGCAAATT GCTGAGGGAGTAGCTCGTGTCGGCAAATCCAAGGGCAAATT < 41bp 0.583638289329948 0.838210925335881 0.20423102 0.8291497 prediction 0.509145272011866 Functional Gain - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105804546 chr11:105804547 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107449 0 0 0 1 105804542 105804563 mRNA hsa-miR-874 GRIA4 miRanda miRanda
8515 chr15 48063473 48063473 1 + C G LUAD 48063472 + 48063452 48063492 41 GGAGACATCCAGATGGCACACCAGAACTTAATGCTGGATCC GGAGACATCCAGATGGCACACGAGAACTTAATGCTGGATCC < 41bp 0.471325120698244 0.754411634267587 0.14008734 0.3965454 prediction 0.508823268535174 Functional Gain - SEMA6D ENSG00000137872 CDS Human protein_coding chr15:48063472 chr15:48063473 nonsynonymous SNV 0.972 3 22 hm5C_associated_SNPs_107487 0 0 0 1 48063469 48063489 mRNA hsa-miR-338-3p SEMA6D miRanda miRanda
8516 chr11 73964702 73964702 1 + C G rs80199049 73964698 + 73964678 73964718 41 ACGGGCACCCCGAGATGTACCAACCTTTTCATGTATTCTGC ACGGGCACCCCGAGATGTACCAACGTTTTCATGTATTCTGC < 41bp 0.452623196363315 0.754358478170641 0.22959438 0.59555924 prediction 0.508716956341282 Functional Gain - PPME1 ENSG00000214517 UTR3 Human protein_coding chr11:73964698 chr11:73964702 . . 0 25 hm5C_associated_SNPs_107495 0 0 1 3 73964701 73964722 mRNA hsa-miR-96 PPME1 miRanda miRanda
8517 chr11 73964702 73964702 1 + C G rs80199049 73964698 + 73964678 73964718 41 ACGGGCACCCCGAGATGTACCAACCTTTTCATGTATTCTGC ACGGGCACCCCGAGATGTACCAACGTTTTCATGTATTCTGC < 41bp 0.452623196363315 0.754358478170641 0.22959438 0.59555924 prediction 0.508716956341282 Functional Gain - PPME1 ENSG00000214517 UTR3 Human protein_coding chr11:73964698 chr11:73964702 . . 0 25 hm5C_associated_SNPs_107495 0 0 1 3 73964699 73964722 mRNA hsa-miR-182 PPME1 miRanda miRanda
8518 chr11 73964702 73964702 1 + C G rs80199049 73964698 + 73964678 73964718 41 ACGGGCACCCCGAGATGTACCAACCTTTTCATGTATTCTGC ACGGGCACCCCGAGATGTACCAACGTTTTCATGTATTCTGC < 41bp 0.452623196363315 0.754358478170641 0.22959438 0.59555924 prediction 0.508716956341282 Functional Gain - PPME1 ENSG00000214517 UTR3 Human protein_coding chr11:73964698 chr11:73964702 . . 0 25 hm5C_associated_SNPs_107495 0 0 1 3 73964701 73964722 mRNA hsa-miR-1271 PPME1 miRanda miRanda
8519 chr1 11718605 11718605 1 + C A PAAD 11718604 + 11718584 11718624 41 CCCCAGCACCTGCCTCAAGTCCCAGGTGGTGGACCTCAAGG CCCCAGCACCTGCCTCAAGTCACAGGTGGTGGACCTCAAGG < 41bp 0.503388883587851 0.757740628215199 0.19430804 0.41762435 prediction 0.508703489254694 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718604 chr1:11718605 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_107496 0 0 1 2 11718589 11718609 mRNA hsa-miR-378 FBXO44 miRanda miRanda
8520 chr1 11718605 11718605 1 + C A PAAD 11718604 + 11718584 11718624 41 CCCCAGCACCTGCCTCAAGTCCCAGGTGGTGGACCTCAAGG CCCCAGCACCTGCCTCAAGTCACAGGTGGTGGACCTCAAGG < 41bp 0.503388883587851 0.757740628215199 0.19430804 0.41762435 prediction 0.508703489254694 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718604 chr1:11718605 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_107496 0 0 1 2 11718588 11718609 mRNA hsa-miR-422a FBXO44 miRanda miRanda
8521 chr15 43477481 43477481 1 + C G rs552195161 43477480 + 43477460 43477500 41 CGGGAGGAGGCGGGGCCAGGCCTGGTCTCTGATAACGGGAT CGGGAGGAGGCGGGGCCAGGCGTGGTCTCTGATAACGGGAT < 41bp 0.572170964360244 0.82647524752605 0.2964602 0.53766024 prediction 0.508608566331613 Functional Gain - CCNDBP1 ENSG00000166946 UTR5 Human protein_coding chr15:43477480 chr15:43477481 . . 0 22 hm5C_associated_SNPs_107500 0 0 0 1 43477475 43477494 mRNA hsa-miR-361-5p CCNDBP1 miRanda miRanda
8522 chr12 110024578 110024578 1 + T C BLCA 110024576 + 110024556 110024596 41 TAGGAGGAGCCCTCCGATACCATCAAGGGAAGATTTCATCC TAGGAGGAGCCCTCCGATACCACCAAGGGAAGATTTCATCC < 41bp 0.560612566309925 0.814905922759598 0.109994054 0.23332375 prediction 0.508586712899348 Functional Gain - MVK ENSG00000110921 CDS Human protein_coding chr12:110024576 chr12:110024578 synonymous SNV . 0 23 hm5C_associated_SNPs_107504 0 0 1 1 110024573 110024596 mRNA hsa-miR-539 MVK miRanda miRanda
8523 chr12 50349765 50349765 1 + C G rs467323 50349764 + 50349744 50349784 41 AGACCCCTGCCTTGGGGGTTCCGGGAATGATGCAACTGGTT AGACCCCTGCCTTGGGGGTTCGGGGAATGATGCAACTGGTT < 41bp 0.584588575727204 0.838768258088288 0.70234764 0.82090825 prediction 0.508359364722169 Functional Gain - LOC101927318 ENSG00000257378 ncRNA_exonic Human antisense chr12:50349764 chr12:50349765 . . 0 22 hm5C_associated_SNPs_107522 0 0 0 2 50349756 50349782 mRNA hsa-miR-148b AQP2 miRanda miRanda
8524 chr12 50349765 50349765 1 + C G rs467323 50349764 + 50349744 50349784 41 AGACCCCTGCCTTGGGGGTTCCGGGAATGATGCAACTGGTT AGACCCCTGCCTTGGGGGTTCGGGGAATGATGCAACTGGTT < 41bp 0.584588575727204 0.838768258088288 0.70234764 0.82090825 prediction 0.508359364722169 Functional Gain - LOC101927318 ENSG00000257378 ncRNA_exonic Human antisense chr12:50349764 chr12:50349765 . . 0 22 hm5C_associated_SNPs_107522 0 0 0 2 50349761 50349785 mRNA hsa-miR-451 AQP2 miRanda miRanda
8525 chr19 14676612 14676612 1 + C A LIHC 14676608 + 14676588 14676628 41 ATGACCATCTGGGCCAAGGGCAAGCACCGCAGCTACCTGAA ATGACCATCTGGGCCAAGGGCAAGAACCGCAGCTACCTGAA < 41bp 0.663368908496127 0.917291631395 0.13756487 0.36496538 prediction 0.507845445797747 Functional Gain - TECR ENSG00000099797 CDS Human protein_coding chr19:14676608 chr19:14676612 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_107562 0 0 0 1 14676601 14676622 mRNA hsa-miR-22 TECR miRanda miRanda
8526 chr16 732411 732411 1 - A C GBM 732414 - 732394 732434 41 ATAGCCAAGTTGGGGATGAGCTGTTCCTGGGTCAGGGGGCT ATAGCCAAGTTGGGGATGAGCTGGTCCTGGGTCAGGGGGCT < 41bp 0.364777565391735 0.753529070350536 0.3166505 0.34620184 prediction 0.507058140701071 Functional Gain - STUB1 ENSG00000103266 CDS Human protein_coding chr16:732414 chr16:732411 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_107637 0 0 1 1 732405 732425 mRNA hsa-miR-873 JMJD8 miRanda miRanda
8527 chr10 71851564 71851564 1 + C T STAD 71851563 + 71851543 71851583 41 GGCGTCCTGCCCAGAATTCACCCCGAACTGCTGGCCAAAAA GGCGTCCTGCCCAGAATTCACTCCGAACTGCTGGCCAAAAA < 41bp 0.540443750915112 0.793850075863935 0.37181115 0.47239938 prediction 0.506812649897646 Functional Gain - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71851563 chr10:71851564 nonsynonymous SNV 0.986 1 22 hm5C_associated_SNPs_107665 0 0 0 1 71851551 71851575 mRNA hsa-miR-503 H2AFY2 miRanda miRanda
8528 chr16 31765100 31765100 1 + T C LIHC 31765098 + 31765078 31765118 41 ATCTTTCAGATATCTTTTCTCATGATACTCAAGGCCTCTTA ATCTTTCAGATATCTTTTCTCACGATACTCAAGGCCTCTTA < 41bp 0.5093919488569 0.76263872859849 0.35150948 0.2709049 prediction 0.50649355948318 Functional Gain - ZNF720 ENSG00000197302 CDS Human protein_coding chr16:31765098 chr16:31765100 synonymous SNV . 0 23 hm5C_associated_SNPs_107701 0 0 1 1 31765087 31765103 mRNA hsa-miR-376b ZNF720 miRanda miRanda
8529 chr1 205437503 205437503 1 + C G rs566222206 205437499 + 205437479 205437519 41 TGCTATAAGAGGGACAGAGCCAGGCCGGAGAGGATAAAGAG TGCTATAAGAGGGACAGAGCCAGGGCGGAGAGGATAAAGAG < 41bp 0.473483094972743 0.753238136970455 0.563487 0.883626 prediction 0.50647627394091 Functional Gain - BLACAT1;CDK18 ENSG00000224717 ncRNA_exonic Human lincRNA chr1:205437499 chr1:205437503 . . 0 25 hm5C_associated_SNPs_107704 0 0 0 1 205437501 205437522 mRNA hsa-miR-211 LOC284577 miRanda miRanda
8530 chr17 39845139 39845139 1 + C G rs563193891 39845135 + 39845115 39845155 41 TAAACACAGGCACCGCCCCTCTGCCCCAGTCACTGAGCCGC TAAACACAGGCACCGCCCCTCTGCGCCAGTCACTGAGCCGC < 41bp 0.528013393958612 0.781121666726546 0.16056934 0.20790514 prediction 0.506216545535869 Functional Gain - EIF1 ENSG00000173812 UTR5 Human protein_coding chr17:39845135 chr17:39845139 . . 0 25 hm5C_associated_SNPs_107739 0 0 1 2 39845133 39845154 mRNA hsa-miR-24 EIF1 miRanda miRanda
8531 chr17 39845139 39845139 1 + C G rs563193891 39845135 + 39845115 39845155 41 TAAACACAGGCACCGCCCCTCTGCCCCAGTCACTGAGCCGC TAAACACAGGCACCGCCCCTCTGCGCCAGTCACTGAGCCGC < 41bp 0.528013393958612 0.781121666726546 0.16056934 0.20790514 prediction 0.506216545535869 Functional Gain - EIF1 ENSG00000173812 UTR5 Human protein_coding chr17:39845135 chr17:39845139 . . 0 25 hm5C_associated_SNPs_107739 0 0 1 2 39845130 39845148 mRNA hsa-miR-134 EIF1 miRanda miRanda
8532 chr9 92279909 92279909 1 + T A rs149429012 92279905 + 92279885 92279925 41 CTCTGGGTCACGCTTGGGGACACATGAAGGATACGCCCTCC CTCTGGGTCACGCTTGGGGACACAAGAAGGATACGCCCTCC < 41bp 0.491272631467127 0.753098343647617 0.28325647 0.23555803 prediction 0.506196687295235 Functional Gain - UNQ6494 ENSG00000130222;ENSG00000237372 intergenic Human other chr9:92279905 chr9:92279909 . . 0 25 hm5C_associated_SNPs_107743 0 0 0 1 92279891 92279915 mRNA hsa-miR-205 LOC100129066 miRanda miRanda
8533 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452440 105452462 mRNA hsa-miR-17 MUM1L1 miRanda miRanda
8534 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452440 105452462 mRNA hsa-miR-20a MUM1L1 miRanda miRanda
8535 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452436 105452462 mRNA hsa-miR-93 MUM1L1 miRanda miRanda
8536 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452440 105452462 mRNA hsa-miR-106a MUM1L1 miRanda miRanda
8537 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452442 105452462 mRNA hsa-miR-106b MUM1L1 miRanda miRanda
8538 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452439 105452461 mRNA hsa-miR-302a MUM1L1 miRanda miRanda
8539 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452439 105452461 mRNA hsa-miR-302b MUM1L1 miRanda miRanda
8540 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452437 105452461 mRNA hsa-miR-302c MUM1L1 miRanda miRanda
8541 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452437 105452461 mRNA hsa-miR-302d MUM1L1 miRanda miRanda
8542 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452440 105452461 mRNA hsa-miR-372 MUM1L1 miRanda miRanda
8543 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452439 105452461 mRNA hsa-miR-373 MUM1L1 miRanda miRanda
8544 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452447 105452472 mRNA hsa-miR-383 MUM1L1 miRanda miRanda
8545 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452440 105452462 mRNA hsa-miR-20b MUM1L1 miRanda miRanda
8546 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452440 105452461 mRNA hsa-miR-520e MUM1L1 miRanda miRanda
8547 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452440 105452461 mRNA hsa-miR-520a-3p MUM1L1 miRanda miRanda
8548 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452440 105452461 mRNA hsa-miR-520b MUM1L1 miRanda miRanda
8549 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452439 105452461 mRNA hsa-miR-520c-3p MUM1L1 miRanda miRanda
8550 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452441 105452462 mRNA hsa-miR-519d MUM1L1 miRanda miRanda
8551 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452440 105452461 mRNA hsa-miR-520d-3p MUM1L1 miRanda miRanda
8552 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 105452445 105452461 mRNA hsa-miR-302e MUM1L1 miRanda miRanda
8553 chr3 97356779 97356779 1 + C A LUAD 97356775 + 97356755 97356795 41 AATGCTCCGAGGCATTGCATCAGGCATGAAGTATCTTTCTG AATGCTCCGAGGCATTGCATCAGGAATGAAGTATCTTTCTG < 41bp 0.411340217438257 0.75260588728806 0.88494617 0.9054551 prediction 0.50521177457612 Functional Gain - EPHA6 ENSG00000080224 CDS Human protein_coding chr3:97356775 chr3:97356779 synonymous SNV . 0 25 hm5C_associated_SNPs_107844 0 0 0 1 97356778 97356799 mRNA hsa-miR-361-5p EPHA6 miRanda miRanda
8554 chr16 30533607 30533607 1 + C A rs570552605 30533603 + 30533583 30533623 41 CACCAGCCTTTCTCCCAGGCCAGGCTCCTTCCTGTCTTCCT CACCAGCCTTTCTCCCAGGCCAGGATCCTTCCTGTCTTCCT < 41bp 0.374774190495795 0.752569100952471 0.18278801 0.27514657 prediction 0.505138201904942 Functional Gain - ITGAL ENSG00000005844 UTR3 Human protein_coding chr16:30533603 chr16:30533607 . . 0 25 hm5C_associated_SNPs_107847 0 0 0 1 30533599 30533623 mRNA hsa-miR-7 ITGAL miRanda miRanda
8555 chr6 36654524 36654524 1 + C G rs74801436 36654520 + 36654500 36654540 41 AGAAGAAGGGCACCCTAGTTCTACCTCAGGCAGCTCAAGCA AGAAGAAGGGCACCCTAGTTCTACGTCAGGCAGCTCAAGCA < 41bp 0.484294704103573 0.752310064830785 0.13243508 0.1725893 prediction 0.50462012966157 Functional Gain - CDKN1A ENSG00000124762 UTR3 Human protein_coding chr6:36654520 chr6:36654524 . . 0 25 hm5C_associated_SNPs_107899 0 0 1 11 36654503 36654527 mRNA hsa-let-7a CDKN1A miRanda miRanda
8556 chr6 36654524 36654524 1 + C G rs74801436 36654520 + 36654500 36654540 41 AGAAGAAGGGCACCCTAGTTCTACCTCAGGCAGCTCAAGCA AGAAGAAGGGCACCCTAGTTCTACGTCAGGCAGCTCAAGCA < 41bp 0.484294704103573 0.752310064830785 0.13243508 0.1725893 prediction 0.50462012966157 Functional Gain - CDKN1A ENSG00000124762 UTR3 Human protein_coding chr6:36654520 chr6:36654524 . . 0 25 hm5C_associated_SNPs_107899 0 0 1 11 36654507 36654527 mRNA hsa-let-7b CDKN1A miRanda miRanda
8557 chr6 36654524 36654524 1 + C G rs74801436 36654520 + 36654500 36654540 41 AGAAGAAGGGCACCCTAGTTCTACCTCAGGCAGCTCAAGCA AGAAGAAGGGCACCCTAGTTCTACGTCAGGCAGCTCAAGCA < 41bp 0.484294704103573 0.752310064830785 0.13243508 0.1725893 prediction 0.50462012966157 Functional Gain - CDKN1A ENSG00000124762 UTR3 Human protein_coding chr6:36654520 chr6:36654524 . . 0 25 hm5C_associated_SNPs_107899 0 0 1 11 36654503 36654527 mRNA hsa-let-7c CDKN1A miRanda miRanda
8558 chr6 36654524 36654524 1 + C G rs74801436 36654520 + 36654500 36654540 41 AGAAGAAGGGCACCCTAGTTCTACCTCAGGCAGCTCAAGCA AGAAGAAGGGCACCCTAGTTCTACGTCAGGCAGCTCAAGCA < 41bp 0.484294704103573 0.752310064830785 0.13243508 0.1725893 prediction 0.50462012966157 Functional Gain - CDKN1A ENSG00000124762 UTR3 Human protein_coding chr6:36654520 chr6:36654524 . . 0 25 hm5C_associated_SNPs_107899 0 0 1 11 36654503 36654527 mRNA hsa-let-7d CDKN1A miRanda miRanda
8559 chr6 36654524 36654524 1 + C G rs74801436 36654520 + 36654500 36654540 41 AGAAGAAGGGCACCCTAGTTCTACCTCAGGCAGCTCAAGCA AGAAGAAGGGCACCCTAGTTCTACGTCAGGCAGCTCAAGCA < 41bp 0.484294704103573 0.752310064830785 0.13243508 0.1725893 prediction 0.50462012966157 Functional Gain - CDKN1A ENSG00000124762 UTR3 Human protein_coding chr6:36654520 chr6:36654524 . . 0 25 hm5C_associated_SNPs_107899 0 0 1 11 36654503 36654527 mRNA hsa-let-7e CDKN1A miRanda miRanda
8560 chr6 36654524 36654524 1 + C G rs74801436 36654520 + 36654500 36654540 41 AGAAGAAGGGCACCCTAGTTCTACCTCAGGCAGCTCAAGCA AGAAGAAGGGCACCCTAGTTCTACGTCAGGCAGCTCAAGCA < 41bp 0.484294704103573 0.752310064830785 0.13243508 0.1725893 prediction 0.50462012966157 Functional Gain - CDKN1A ENSG00000124762 UTR3 Human protein_coding chr6:36654520 chr6:36654524 . . 0 25 hm5C_associated_SNPs_107899 0 0 1 11 36654503 36654527 mRNA hsa-let-7f CDKN1A miRanda miRanda
8561 chr6 36654524 36654524 1 + C G rs74801436 36654520 + 36654500 36654540 41 AGAAGAAGGGCACCCTAGTTCTACCTCAGGCAGCTCAAGCA AGAAGAAGGGCACCCTAGTTCTACGTCAGGCAGCTCAAGCA < 41bp 0.484294704103573 0.752310064830785 0.13243508 0.1725893 prediction 0.50462012966157 Functional Gain - CDKN1A ENSG00000124762 UTR3 Human protein_coding chr6:36654520 chr6:36654524 . . 0 25 hm5C_associated_SNPs_107899 0 0 1 11 36654514 36654535 mRNA hsa-miR-22 CDKN1A miRanda miRanda
8562 chr6 36654524 36654524 1 + C G rs74801436 36654520 + 36654500 36654540 41 AGAAGAAGGGCACCCTAGTTCTACCTCAGGCAGCTCAAGCA AGAAGAAGGGCACCCTAGTTCTACGTCAGGCAGCTCAAGCA < 41bp 0.484294704103573 0.752310064830785 0.13243508 0.1725893 prediction 0.50462012966157 Functional Gain - CDKN1A ENSG00000124762 UTR3 Human protein_coding chr6:36654520 chr6:36654524 . . 0 25 hm5C_associated_SNPs_107899 0 0 1 11 36654503 36654527 mRNA hsa-miR-98 CDKN1A miRanda miRanda
8563 chr6 36654524 36654524 1 + C G rs74801436 36654520 + 36654500 36654540 41 AGAAGAAGGGCACCCTAGTTCTACCTCAGGCAGCTCAAGCA AGAAGAAGGGCACCCTAGTTCTACGTCAGGCAGCTCAAGCA < 41bp 0.484294704103573 0.752310064830785 0.13243508 0.1725893 prediction 0.50462012966157 Functional Gain - CDKN1A ENSG00000124762 UTR3 Human protein_coding chr6:36654520 chr6:36654524 . . 0 25 hm5C_associated_SNPs_107899 0 0 1 11 36654503 36654527 mRNA hsa-let-7g CDKN1A miRanda miRanda
8564 chr6 36654524 36654524 1 + C G rs74801436 36654520 + 36654500 36654540 41 AGAAGAAGGGCACCCTAGTTCTACCTCAGGCAGCTCAAGCA AGAAGAAGGGCACCCTAGTTCTACGTCAGGCAGCTCAAGCA < 41bp 0.484294704103573 0.752310064830785 0.13243508 0.1725893 prediction 0.50462012966157 Functional Gain - CDKN1A ENSG00000124762 UTR3 Human protein_coding chr6:36654520 chr6:36654524 . . 0 25 hm5C_associated_SNPs_107899 0 0 1 11 36654505 36654527 mRNA hsa-let-7i CDKN1A miRanda miRanda
8565 chr6 36654524 36654524 1 + C G rs74801436 36654520 + 36654500 36654540 41 AGAAGAAGGGCACCCTAGTTCTACCTCAGGCAGCTCAAGCA AGAAGAAGGGCACCCTAGTTCTACGTCAGGCAGCTCAAGCA < 41bp 0.484294704103573 0.752310064830785 0.13243508 0.1725893 prediction 0.50462012966157 Functional Gain - CDKN1A ENSG00000124762 UTR3 Human protein_coding chr6:36654520 chr6:36654524 . . 0 25 hm5C_associated_SNPs_107899 0 0 1 11 36654504 36654525 mRNA hsa-miR-379 CDKN1A miRanda miRanda
8566 chr22 26839957 26839957 1 + C G rs117704397 26839956 + 26839936 26839976 41 TCAGCCACGGAACGTGTGATCCGCTTACCTCACTGCCTACA TCAGCCACGGAACGTGTGATCGGCTTACCTCACTGCCTACA < 41bp 0.450125880433138 0.752252334136073 0.11493838 0.44794264 prediction 0.504504668272146 Functional Gain - ASPHD2;HPS4 ENSG00000128203 UTR3 Human protein_coding chr22:26839956 chr22:26839957 . . 0 22 hm5C_associated_SNPs_107911 0 0 0 4 26839952 26839973 mRNA hsa-miR-34a ASPHD2 miRanda miRanda
8567 chr22 26839957 26839957 1 + C G rs117704397 26839956 + 26839936 26839976 41 TCAGCCACGGAACGTGTGATCCGCTTACCTCACTGCCTACA TCAGCCACGGAACGTGTGATCGGCTTACCTCACTGCCTACA < 41bp 0.450125880433138 0.752252334136073 0.11493838 0.44794264 prediction 0.504504668272146 Functional Gain - ASPHD2;HPS4 ENSG00000128203 UTR3 Human protein_coding chr22:26839956 chr22:26839957 . . 0 22 hm5C_associated_SNPs_107911 0 0 0 4 26839951 26839973 mRNA hsa-miR-34c-5p ASPHD2 miRanda miRanda
8568 chr22 26839957 26839957 1 + C G rs117704397 26839956 + 26839936 26839976 41 TCAGCCACGGAACGTGTGATCCGCTTACCTCACTGCCTACA TCAGCCACGGAACGTGTGATCGGCTTACCTCACTGCCTACA < 41bp 0.450125880433138 0.752252334136073 0.11493838 0.44794264 prediction 0.504504668272146 Functional Gain - ASPHD2;HPS4 ENSG00000128203 UTR3 Human protein_coding chr22:26839956 chr22:26839957 . . 0 22 hm5C_associated_SNPs_107911 0 0 0 4 26839954 26839973 mRNA hsa-miR-449a ASPHD2 miRanda miRanda
8569 chr22 26839957 26839957 1 + C G rs117704397 26839956 + 26839936 26839976 41 TCAGCCACGGAACGTGTGATCCGCTTACCTCACTGCCTACA TCAGCCACGGAACGTGTGATCGGCTTACCTCACTGCCTACA < 41bp 0.450125880433138 0.752252334136073 0.11493838 0.44794264 prediction 0.504504668272146 Functional Gain - ASPHD2;HPS4 ENSG00000128203 UTR3 Human protein_coding chr22:26839956 chr22:26839957 . . 0 22 hm5C_associated_SNPs_107911 0 0 0 4 26839954 26839973 mRNA hsa-miR-449b ASPHD2 miRanda miRanda
8570 chr12 101381432 101381432 1 + C A HNSC 101381428 + 101381408 101381448 41 GACTGCTACACTGCCCCTTTCAGCCAGCAAAGGATCCATCA GACTGCTACACTGCCCCTTTCAGCAAGCAAAGGATCCATCA < 41bp 0.337746672256163 0.752247061924237 0.77795136 0.86937374 prediction 0.504494123848474 Functional Gain - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101381428 chr12:101381432 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_107912 0 0 0 1 101381413 101381435 mRNA hsa-miR-149 ANO4 miRanda miRanda
8571 chr15 99874230 99874230 1 + C A UCEC 99874226 + 99874206 99874246 41 TGTGCCTTTCTCTGCAGTACCTCACTGTGGACCGAAATCGT TGTGCCTTTCTCTGCAGTACCTCAATGTGGACCGAAATCGT < 41bp 0.318699427371634 0.752160173037377 0.021891356 0.8376912 prediction 0.504320346074754 Functional Gain - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99874226 chr15:99874230 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_107932 0 0 0 1 99874223 99874235 mRNA hsa-miR-128 LRRC28 miRanda miRanda
8572 chr15 65945014 65945014 1 + T C COAD 65945012 + 65944992 65945032 41 ATAGGGATTTCTGAAGAGATCATGGGCCTGACAATCCTTGC ATAGGGATTTCTGAAGAGATCACGGGCCTGACAATCCTTGC < 41bp 0.4937570452801 0.75189665507703 0.21708637 0.34485066 prediction 0.503793310154059 Functional Gain - SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65945012 chr15:65945014 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_107988 0 0 0 1 65945009 65945028 mRNA hsa-miR-219-5p SLC24A1 miRanda miRanda
8573 chr5 121787029 121787029 1 + C A LUSC 121787025 + 121787005 121787045 41 TGTGGTGCAGATGGAGCAGCCTAGCCTTGAACTGAATGGAG TGTGGTGCAGATGGAGCAGCCTAGACTTGAACTGAATGGAG < 41bp 0.354871751002792 0.75183318331425 0.35446328 0.36738384 prediction 0.5036663666285 Functional Gain - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121787025 chr5:121787029 nonsynonymous SNV 0.280 0 25 hm5C_associated_SNPs_108003 0 0 0 1 121787024 121787046 mRNA hsa-miR-136 SNCAIP miRanda miRanda
8574 chr10 12203088 12203088 1 + T C STAD 12203086 + 12203066 12203106 41 ATGTGCATTCTTCTCTAAGACATGGATTGAAGTGTCTGGTT ATGTGCATTCTTCTCTAAGACACGGATTGAAGTGTCTGGTT < 41bp 0.481395416100621 0.75118672504939 0.01695028 0.010368466 prediction 0.502373450098781 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12203086 chr10:12203088 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_108141 0 0 1 2 12203077 12203101 mRNA hsa-miR-181a SEC61A2 miRanda miRanda
8575 chr10 12203088 12203088 1 + T C STAD 12203086 + 12203066 12203106 41 ATGTGCATTCTTCTCTAAGACATGGATTGAAGTGTCTGGTT ATGTGCATTCTTCTCTAAGACACGGATTGAAGTGTCTGGTT < 41bp 0.481395416100621 0.75118672504939 0.01695028 0.010368466 prediction 0.502373450098781 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12203086 chr10:12203088 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_108141 0 0 1 2 12203077 12203101 mRNA hsa-miR-181c SEC61A2 miRanda miRanda
8576 chr7 47805539 47805539 1 + T A rs75131981 47805535 + 47805515 47805555 41 TGTCACAGCTAAAGCAATGGCCAGTGTCAGTGTATTTGCAC TGTCACAGCTAAAGCAATGGCCAGAGTCAGTGTATTTGCAC < 41bp 0.482924551436042 0.751140233318373 0.03138125 0.332932 prediction 0.502280466636746 Functional Gain - LINC00525 ENSG00000146666 ncRNA_exonic Human antisense chr7:47805535 chr7:47805539 . . 0 25 hm5C_associated_SNPs_108157 0 0 0 4 47805535 47805556 mRNA hsa-miR-19a MGC16075 miRanda miRanda
8577 chr7 47805539 47805539 1 + T A rs75131981 47805535 + 47805515 47805555 41 TGTCACAGCTAAAGCAATGGCCAGTGTCAGTGTATTTGCAC TGTCACAGCTAAAGCAATGGCCAGAGTCAGTGTATTTGCAC < 41bp 0.482924551436042 0.751140233318373 0.03138125 0.332932 prediction 0.502280466636746 Functional Gain - LINC00525 ENSG00000146666 ncRNA_exonic Human antisense chr7:47805535 chr7:47805539 . . 0 25 hm5C_associated_SNPs_108157 0 0 0 4 47805535 47805556 mRNA hsa-miR-19b MGC16075 miRanda miRanda
8578 chr7 47805539 47805539 1 + T A rs75131981 47805535 + 47805515 47805555 41 TGTCACAGCTAAAGCAATGGCCAGTGTCAGTGTATTTGCAC TGTCACAGCTAAAGCAATGGCCAGAGTCAGTGTATTTGCAC < 41bp 0.482924551436042 0.751140233318373 0.03138125 0.332932 prediction 0.502280466636746 Functional Gain - LINC00525 ENSG00000146666 ncRNA_exonic Human antisense chr7:47805535 chr7:47805539 . . 0 25 hm5C_associated_SNPs_108157 0 0 0 4 47805519 47805540 mRNA hsa-miR-193a-3p MGC16075 miRanda miRanda
8579 chr7 47805539 47805539 1 + T A rs75131981 47805535 + 47805515 47805555 41 TGTCACAGCTAAAGCAATGGCCAGTGTCAGTGTATTTGCAC TGTCACAGCTAAAGCAATGGCCAGAGTCAGTGTATTTGCAC < 41bp 0.482924551436042 0.751140233318373 0.03138125 0.332932 prediction 0.502280466636746 Functional Gain - LINC00525 ENSG00000146666 ncRNA_exonic Human antisense chr7:47805535 chr7:47805539 . . 0 25 hm5C_associated_SNPs_108157 0 0 0 4 47805519 47805540 mRNA hsa-miR-193b MGC16075 miRanda miRanda
8580 chr7 143018575 143018575 1 + C T SKCM 143018574 + 143018554 143018594 41 TCTTCTGCCACCTCATCTCTCCCCAGGCTGTTGGTGAGAAC TCTTCTGCCACCTCATCTCTCTCCAGGCTGTTGGTGAGAAC < 41bp 0.5490652176741 0.799826435811229 0.26732716 0.92709875 prediction 0.501522436274258 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143018574 chr7:143018575 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_108242 0 0 0 1 143018554 143018576 mRNA hsa-miR-185 CLCN1 miRanda miRanda
8581 chr6 30037008 30037008 1 + C G GBM 30037004 + 30036984 30037024 41 CCGCAAAGGACGGCGTCGTGCAACCCTAGGACCGACCCCCA CCGCAAAGGACGGCGTCGTGCAACGCTAGGACCGACCCCCA < 41bp 0.497803944103782 0.750736771398176 0.068674356 0.1336141 prediction 0.501473542796352 Functional Gain - PPP1R11 ENSG00000204619 CDS Human protein_coding chr6:30037004 chr6:30037008 synonymous SNV . 0 25 hm5C_associated_SNPs_108250 0 0 1 1 30036989 30037011 mRNA hsa-miR-296-3p PPP1R11 miRanda miRanda
8582 chr1 32560458 32560458 1 + T C STAD 32560456 + 32560436 32560476 41 TCCATCAGCACCTCCGTGATCCTCATGCAGCACCTGCTGCC TCCATCAGCACCTCCGTGATCCCCATGCAGCACCTGCTGCC < 41bp 0.456663572781291 0.750725292563386 0.088831455 0.06978634 prediction 0.501450585126771 Functional Gain - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32560456 chr1:32560458 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_108257 0 0 0 2 32560455 32560475 mRNA hsa-miR-214 TMEM39B miRanda miRanda
8583 chr1 32560458 32560458 1 + T C STAD 32560456 + 32560436 32560476 41 TCCATCAGCACCTCCGTGATCCTCATGCAGCACCTGCTGCC TCCATCAGCACCTCCGTGATCCCCATGCAGCACCTGCTGCC < 41bp 0.456663572781291 0.750725292563386 0.088831455 0.06978634 prediction 0.501450585126771 Functional Gain - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32560456 chr1:32560458 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_108257 0 0 0 2 32560441 32560465 mRNA hsa-miR-153 TMEM39B miRanda miRanda
8584 chr16 71417284 71417284 1 + C A LUAD 71417280 + 71417260 71417300 41 TGTGTTGCAGGGATTCCTGTCAGACCTGCTGAAGAAGGCGA TGTGTTGCAGGGATTCCTGTCAGAACTGCTGAAGAAGGCGA < 41bp 0.338304870177855 0.750639137896141 0.4483738 0.43186995 prediction 0.501278275792283 Functional Gain - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71417280 chr16:71417284 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_108282 0 0 0 1 71417271 71417291 mRNA hsa-miR-214 CALB2 miRanda miRanda
8585 chrX 55651167 55651167 1 + C A rs7884414 55651163 + 55651143 55651183 41 CATTAATCTCTAAACTTACCCAGCCTGGTTGGTGCCAAGTC CATTAATCTCTAAACTTACCCAGCATGGTTGGTGCCAAGTC < 41bp 0.362490555452947 0.750487371460788 0.12924477 0.17233396 prediction 0.500974742921576 Functional Gain - FOXR2 ENSG00000189299 UTR3 Human protein_coding chrX:55651163 chrX:55651167 . . 0 25 hm5C_associated_SNPs_108311 0 0 0 2 55651160 55651181 mRNA hsa-miR-96 FOXR2 miRanda miRanda
8586 chrX 55651167 55651167 1 + C A rs7884414 55651163 + 55651143 55651183 41 CATTAATCTCTAAACTTACCCAGCCTGGTTGGTGCCAAGTC CATTAATCTCTAAACTTACCCAGCATGGTTGGTGCCAAGTC < 41bp 0.362490555452947 0.750487371460788 0.12924477 0.17233396 prediction 0.500974742921576 Functional Gain - FOXR2 ENSG00000189299 UTR3 Human protein_coding chrX:55651163 chrX:55651167 . . 0 25 hm5C_associated_SNPs_108311 0 0 0 2 55651160 55651181 mRNA hsa-miR-1271 FOXR2 miRanda miRanda
8587 chr17 57270975 57270975 1 + C A HNSC 57270971 + 57270951 57270991 41 AGACTCCAAAGCTGTGCTTCCTCCCACACTGCCACAGCCAG AGACTCCAAAGCTGTGCTTCCTCCAACACTGCCACAGCCAG < 41bp 0.313776307624176 0.750207690205336 0.15459114 0.9596409 prediction 0.500415380410672 Functional Gain - PRR11 ENSG00000068489 CDS Human protein_coding chr17:57270971 chr17:57270975 synonymous SNV . 0 25 hm5C_associated_SNPs_108373 0 0 1 4 57270963 57270984 mRNA hsa-miR-34a PRR11 miRanda miRanda
8588 chr17 57270975 57270975 1 + C A HNSC 57270971 + 57270951 57270991 41 AGACTCCAAAGCTGTGCTTCCTCCCACACTGCCACAGCCAG AGACTCCAAAGCTGTGCTTCCTCCAACACTGCCACAGCCAG < 41bp 0.313776307624176 0.750207690205336 0.15459114 0.9596409 prediction 0.500415380410672 Functional Gain - PRR11 ENSG00000068489 CDS Human protein_coding chr17:57270971 chr17:57270975 synonymous SNV . 0 25 hm5C_associated_SNPs_108373 0 0 1 4 57270962 57270984 mRNA hsa-miR-34c-5p PRR11 miRanda miRanda
8589 chr17 57270975 57270975 1 + C A HNSC 57270971 + 57270951 57270991 41 AGACTCCAAAGCTGTGCTTCCTCCCACACTGCCACAGCCAG AGACTCCAAAGCTGTGCTTCCTCCAACACTGCCACAGCCAG < 41bp 0.313776307624176 0.750207690205336 0.15459114 0.9596409 prediction 0.500415380410672 Functional Gain - PRR11 ENSG00000068489 CDS Human protein_coding chr17:57270971 chr17:57270975 synonymous SNV . 0 25 hm5C_associated_SNPs_108373 0 0 1 4 57270963 57270984 mRNA hsa-miR-449a PRR11 miRanda miRanda
8590 chr17 57270975 57270975 1 + C A HNSC 57270971 + 57270951 57270991 41 AGACTCCAAAGCTGTGCTTCCTCCCACACTGCCACAGCCAG AGACTCCAAAGCTGTGCTTCCTCCAACACTGCCACAGCCAG < 41bp 0.313776307624176 0.750207690205336 0.15459114 0.9596409 prediction 0.500415380410672 Functional Gain - PRR11 ENSG00000068489 CDS Human protein_coding chr17:57270971 chr17:57270975 synonymous SNV . 0 25 hm5C_associated_SNPs_108373 0 0 1 4 57270963 57270984 mRNA hsa-miR-449b PRR11 miRanda miRanda
8591 chr10 99213292 99213292 1 + C A KIRC 99213288 + 99213268 99213308 41 TTAATCATTTCCCAACCAGCCTGGCTAAACAATTGTGTGGG TTAATCATTTCCCAACCAGCCTGGATAAACAATTGTGTGGG < 41bp 0.334158732317471 0.749984358639947 0.36427552 0.39534765 prediction 0.499968717279895 Functional Gain - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99213288 chr10:99213292 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_108421 0 0 0 1 99213291 99213312 mRNA hsa-miR-328 ZDHHC16 miRanda miRanda
8592 chr22 44602247 44602247 1 + T G STAD 44602244 + 44602224 44602264 41 CACTGAGGGTGCTCTATGGTCTGTTCTGCAAGCACACGCAG CACTGAGGGTGCTCTATGGTCTGGTCTGCAAGCACACGCAG < 41bp 0.355386422969145 0.749913053611757 0.17617247 0.39864662 prediction 0.499826107223515 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44602244 chr22:44602247 nonsynonymous SNV 0.013 4 24 hm5C_associated_SNPs_108434 0 0 0 2 44602240 44602262 mRNA hsa-miR-187 PARVG miRanda miRanda
8593 chr22 44602247 44602247 1 + T G STAD 44602244 + 44602224 44602264 41 CACTGAGGGTGCTCTATGGTCTGTTCTGCAAGCACACGCAG CACTGAGGGTGCTCTATGGTCTGGTCTGCAAGCACACGCAG < 41bp 0.355386422969145 0.749913053611757 0.17617247 0.39864662 prediction 0.499826107223515 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44602244 chr22:44602247 nonsynonymous SNV 0.013 4 24 hm5C_associated_SNPs_108434 0 0 0 2 44602236 44602259 mRNA hsa-miR-431 PARVG miRanda miRanda
8594 chr2 33003043 33003043 1 + C T SKCM 33003042 + 33003022 33003062 41 AGCGCTGTGTGACTCTAGAACCCGATGTAAGTTTGTTTGAT AGCGCTGTGTGACTCTAGAACTCGATGTAAGTTTGTTTGAT < 41bp 0.523022835688207 0.772915079017558 0.19736543 0.38362882 prediction 0.499784486658702 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:33003042 chr2:33003043 nonsynonymous SNV 0.946 3 22 hm5C_associated_SNPs_108438 0 0 1 1 33003036 33003047 mRNA hsa-miR-23a TTC27 miRanda miRanda
8595 chr16 80583508 80583508 1 + T C COAD 80583506 + 80583486 80583526 41 CTCAGAACGACCTGACTTTTCTTAGGATCAGATCAAAGAAA CTCAGAACGACCTGACTTTTCTCAGGATCAGATCAAAGAAA < 41bp 0.525656598976796 0.775378467142303 0.06652978 0.03594908 prediction 0.499443736331014 Functional Gain - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80583506 chr16:80583508 synonymous SNV . 0 23 hm5C_associated_SNPs_108470 0 0 0 2 80583495 80583516 mRNA hsa-miR-192 DYNLRB2 miRanda miRanda
8596 chr16 80583508 80583508 1 + T C COAD 80583506 + 80583486 80583526 41 CTCAGAACGACCTGACTTTTCTTAGGATCAGATCAAAGAAA CTCAGAACGACCTGACTTTTCTCAGGATCAGATCAAAGAAA < 41bp 0.525656598976796 0.775378467142303 0.06652978 0.03594908 prediction 0.499443736331014 Functional Gain - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80583506 chr16:80583508 synonymous SNV . 0 23 hm5C_associated_SNPs_108470 0 0 0 2 80583495 80583516 mRNA hsa-miR-215 DYNLRB2 miRanda miRanda
8597 chr14 23846557 23846557 1 + C T SKCM 23846556 + 23846536 23846576 41 GACAAGGCCTTCCTCACCTCCCACAAGGGCATCCTGCTGGA GACAAGGCCTTCCTCACCTCCTACAAGGGCATCCTGCTGGA < 41bp 0.512473595178018 0.761876594503963 0.14412293 0.9218287 prediction 0.498805998651889 Functional Gain - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23846556 chr14:23846557 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_108556 0 0 0 1 23846554 23846575 mRNA hsa-miR-214 CMTM5 miRanda miRanda
8598 chr2 47690292 47690292 1 + T C LUAD 47690290 + 47690270 47690310 41 TAATAAGTGCAGCCAGAGATCTTGGTAAGAATGGGTCATTG TAATAAGTGCAGCCAGAGATCTCGGTAAGAATGGGTCATTG < 41bp 0.547988351595601 0.797366888204873 0.1767523 0.39546305 prediction 0.498757073218544 Functional Gain - MSH2 ENSG00000095002 CDS Human protein_coding chr2:47690290 chr2:47690292 synonymous SNV . 0 23 hm5C_associated_SNPs_108562 0 0 1 3 47690275 47690293 mRNA hsa-miR-31 MSH2 miRanda miRanda
8599 chr2 47690292 47690292 1 + T C LUAD 47690290 + 47690270 47690310 41 TAATAAGTGCAGCCAGAGATCTTGGTAAGAATGGGTCATTG TAATAAGTGCAGCCAGAGATCTCGGTAAGAATGGGTCATTG < 41bp 0.547988351595601 0.797366888204873 0.1767523 0.39546305 prediction 0.498757073218544 Functional Gain - MSH2 ENSG00000095002 CDS Human protein_coding chr2:47690290 chr2:47690292 synonymous SNV . 0 23 hm5C_associated_SNPs_108562 0 0 1 3 47690285 47690293 mRNA hsa-miR-224 MSH2 miRanda miRanda
8600 chr2 47690292 47690292 1 + T C LUAD 47690290 + 47690270 47690310 41 TAATAAGTGCAGCCAGAGATCTTGGTAAGAATGGGTCATTG TAATAAGTGCAGCCAGAGATCTCGGTAAGAATGGGTCATTG < 41bp 0.547988351595601 0.797366888204873 0.1767523 0.39546305 prediction 0.498757073218544 Functional Gain - MSH2 ENSG00000095002 CDS Human protein_coding chr2:47690290 chr2:47690292 synonymous SNV . 0 23 hm5C_associated_SNPs_108562 0 0 1 3 47690288 47690293 mRNA hsa-miR-186 MSH2 miRanda miRanda
8601 chr10 3178905 3178905 1 + T A rs7673 3178901 + 3178881 3178921 41 CGGCGAGTGCCCATCTGCCCCACCTGCTCCAGTGCGTGCTG CGGCGAGTGCCCATCTGCCCCACCAGCTCCAGTGCGTGCTG < 41bp 0.444207941743981 0.749362777980101 0.031430423 0.06728843 prediction 0.498725555960202 Functional Gain - PFKP ENSG00000067057 UTR3 Human protein_coding chr10:3178901 chr10:3178905 . . 0 25 hm5C_associated_SNPs_108568 0 0 1 1 3178900 3178921 mRNA hsa-miR-29a PFKP miRanda miRanda
8602 chr10 74882006 74882006 1 + T G UCEC 74882003 + 74881983 74882023 41 GATTCTGTGCTGATTGGATGCTCTGAGCAGCAGGAAGCATG GATTCTGTGCTGATTGGATGCTCGGAGCAGCAGGAAGCATG < 41bp 0.465853449821929 0.749207610680387 0.16124758 0.22216088 prediction 0.498415221360774 Functional Gain - NUDT13 ENSG00000166321 CDS Human protein_coding chr10:74882003 chr10:74882006 synonymous SNV . 0 24 hm5C_associated_SNPs_108601 0 0 1 1 74881997 74882017 mRNA hsa-miR-370 NUDT13 miRanda miRanda
8603 chr19 10823815 10823815 1 + C T CESC 10823814 + 10823794 10823834 41 CTGCAGCTCATGAGCGCCGTCCGCACCAGCATCGTGGAGAA CTGCAGCTCATGAGCGCCGTCTGCACCAGCATCGTGGAGAA < 41bp 0.518287067434769 0.76720996073328 0.09714359 0.18542898 prediction 0.497845786597021 Functional Gain - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823814 chr19:10823815 nonsynonymous SNV 0.748 3 22 hm5C_associated_SNPs_108670 0 0 1 1 10823802 10823824 mRNA hsa-miR-138 DNM2 miRanda miRanda
8604 chr22 45110520 45110520 1 + C T SKCM 45110519 + 45110499 45110539 41 CAGCGCAAGGGGCTGCCCGACCAGGAGCTCTTCAGCCTCAA CAGCGCAAGGGGCTGCCCGACTAGGAGCTCTTCAGCCTCAA < 41bp 0.500813887989443 0.749676504040943 0.27846932 0.06974411 prediction 0.497725232103 Functional Gain - PRR5;PRR5-ARHGAP8 ENSG00000186654;ENSG00000241484;ENSG00000248405 CDS Human other chr22:45110519 chr22:45110520 stopgain 1.000 0 22 hm5C_associated_SNPs_108691 0 0 1 1 45110517 45110538 mRNA hsa-miR-485-5p PRR5 miRanda miRanda
8605 chrX 122387269 122387269 1 + C G CESC 122387265 + 122387245 122387285 41 GCACACATCCTTTGTTACGCCTAGCTTCCCCACTGACGCAG GCACACATCCTTTGTTACGCCTAGGTTCCCCACTGACGCAG < 41bp 0.571776703637315 0.82034524201609 0.055459082 0.12722829 prediction 0.497137076757548 Functional Gain - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122387265 chrX:122387269 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_108745 0 0 0 1 122387257 122387278 mRNA hsa-miR-491-5p GRIA3 miRanda miRanda
8606 chr22 24123393 24123393 1 + C A LUSC 24123392 + 24123372 24123412 41 CACCCCAGCCAGACGCCCCGCCAGATGCCTGTGAGGCCTCC CACCCCAGCCAGACGCCCCGCAAGATGCCTGTGAGGCCTCC < 41bp 0.521833238935257 0.770380800508333 0.40145323 0.07733813 prediction 0.497095123146153 Functional Gain - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24123392 chr22:24123393 nonsynonymous SNV 0.879 4 22 hm5C_associated_SNPs_108751 0 0 1 1 24123391 24123414 mRNA hsa-miR-28-5p MMP11 miRanda miRanda
8607 chr16 71885986 71885986 1 + C G rs113374986 71885985 + 71885965 71886005 41 CACACAGGAGAAGAAACATTCCAAAATCAGGGCCTCCCTGT CACACAGGAGAAGAAACATTCGAAAATCAGGGCCTCCCTGT < 41bp 0.443100526543617 0.747934624173326 0.10665047 0.2328474 prediction 0.495869248346652 Functional Gain - ATXN1L ENSG00000224470 UTR3 Human protein_coding chr16:71885985 chr16:71885986 . . 0 22 hm5C_associated_SNPs_108890 0 0 1 3 71885966 71885987 mRNA hsa-miR-1 ATXN1L miRanda miRanda
8608 chr16 71885986 71885986 1 + C G rs113374986 71885985 + 71885965 71886005 41 CACACAGGAGAAGAAACATTCCAAAATCAGGGCCTCCCTGT CACACAGGAGAAGAAACATTCGAAAATCAGGGCCTCCCTGT < 41bp 0.443100526543617 0.747934624173326 0.10665047 0.2328474 prediction 0.495869248346652 Functional Gain - ATXN1L ENSG00000224470 UTR3 Human protein_coding chr16:71885985 chr16:71885986 . . 0 22 hm5C_associated_SNPs_108890 0 0 1 3 71885966 71885987 mRNA hsa-miR-206 ATXN1L miRanda miRanda
8609 chr16 71885986 71885986 1 + C G rs113374986 71885985 + 71885965 71886005 41 CACACAGGAGAAGAAACATTCCAAAATCAGGGCCTCCCTGT CACACAGGAGAAGAAACATTCGAAAATCAGGGCCTCCCTGT < 41bp 0.443100526543617 0.747934624173326 0.10665047 0.2328474 prediction 0.495869248346652 Functional Gain - ATXN1L ENSG00000224470 UTR3 Human protein_coding chr16:71885985 chr16:71885986 . . 0 22 hm5C_associated_SNPs_108890 0 0 1 3 71885968 71885987 mRNA hsa-miR-613 ATXN1L miRanda miRanda
8610 chr2 96686970 96686970 1 + C A UCEC 96686969 + 96686949 96686989 41 CAAGACAGAGGACCTGATAGCCTGGGTGTCCCAGTGAGTGA CAAGACAGAGGACCTGATAGCATGGGTGTCCCAGTGAGTGA < 41bp 0.515988752040355 0.763743751388604 0.8026848 0.89946336 prediction 0.495509998696499 Functional Gain - FAHD2CP ENSG00000231584 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96686969 chr2:96686970 . . 0 22 hm5C_associated_SNPs_108928 0 0 1 1 96686969 96686981 mRNA hsa-miR-495 LOC729234 miRanda miRanda
8611 chr15 35529608 35529608 1 + C A rs535123218 35529604 + 35529584 35529624 41 AAAGAACTTGTCCTGGACAACAGTCGGTCGAATGAAGGCAA AAAGAACTTGTCCTGGACAACAGTAGGTCGAATGAAGGCAA < 41bp 0.380670622173761 0.747643192113682 0.35214242 0.34954357 prediction 0.495286384227364 Functional Gain - ANP32AP1 ENSG00000259516 ncRNA_exonic Human transcribed_processed_pseudogene chr15:35529604 chr15:35529608 . . 0 25 hm5C_associated_SNPs_108953 0 0 1 1 35529601 35529622 mRNA hsa-miR-205 LOC723972 miRanda miRanda
8612 chr7 98957173 98957173 1 + T C COAD 98957171 + 98957151 98957191 41 ACTGAGTCTTGTTTCAGGGCCATGACTGCTGCCCAATGCTC ACTGAGTCTTGTTTCAGGGCCACGACTGCTGCCCAATGCTC < 41bp 0.477749324214746 0.747638536708126 0.042124182 0.013213247 prediction 0.495277073416251 Functional Gain - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98957171 chr7:98957173 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_108955 0 0 1 1 98957157 98957173 mRNA hsa-miR-328 ARPC1A miRanda miRanda
8613 chr11 118886068 118886068 1 + T G UCEC 118886066 + 118886046 118886086 41 CCAGACCGAGTTGGGGCCAACTTTGATCACAGCTCCAGGAC CCAGACCGAGTTGGGGCCAACTGTGATCACAGCTCCAGGAC < 41bp 0.399978491280356 0.747633140360578 0.027333468 0.07934615 prediction 0.495266280721157 Functional Gain - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118886066 chr11:118886068 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_108957 0 0 1 2 118886059 118886082 mRNA hsa-miR-122 CCDC84 miRanda miRanda
8614 chr11 118886068 118886068 1 + T G UCEC 118886066 + 118886046 118886086 41 CCAGACCGAGTTGGGGCCAACTTTGATCACAGCTCCAGGAC CCAGACCGAGTTGGGGCCAACTGTGATCACAGCTCCAGGAC < 41bp 0.399978491280356 0.747633140360578 0.027333468 0.07934615 prediction 0.495266280721157 Functional Gain - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118886066 chr11:118886068 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_108957 0 0 1 2 118886064 118886084 mRNA hsa-miR-378 CCDC84 miRanda miRanda
8615 chr19 1272061 1272061 1 + C A rs200903901 1272057 + 1272037 1272077 41 TTATGACAGTTACGGTAAGTCACACTCCGAGGGCGCCACGC TTATGACAGTTACGGTAAGTCACAATCCGAGGGCGCCACGC < 41bp 0.678981083073784 0.926534463492639 0.031499863 0.01848051 prediction 0.495106760837711 Functional Gain - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272057 chr19:1272061 nonsynonymous SNV 0.007 1 25 hm5C_associated_SNPs_108979 0 0 1 1 1272040 1272061 mRNA hsa-miR-218 CIRBP miRanda miRanda
8616 chr8 144126088 144126088 1 + C T SARC 144126087 + 144126067 144126107 41 ACCTGCCCTCTGCCCTGGCACCCCAGGGACTCACTGCCAAA ACCTGCCCTCTGCCCTGGCACTCCAGGGACTCACTGCCAAA < 41bp 0.516338483249012 0.763340757673926 0.1943067 0.94191414 prediction 0.494004548849829 Functional Gain - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144126087 chr8:144126088 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_109127 0 0 0 4 144126085 144126105 mRNA hsa-miR-34a C8orf31 miRanda miRanda
8617 chr8 144126088 144126088 1 + C T SARC 144126087 + 144126067 144126107 41 ACCTGCCCTCTGCCCTGGCACCCCAGGGACTCACTGCCAAA ACCTGCCCTCTGCCCTGGCACTCCAGGGACTCACTGCCAAA < 41bp 0.516338483249012 0.763340757673926 0.1943067 0.94191414 prediction 0.494004548849829 Functional Gain - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144126087 chr8:144126088 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_109127 0 0 0 4 144126085 144126105 mRNA hsa-miR-34c-5p C8orf31 miRanda miRanda
8618 chr8 144126088 144126088 1 + C T SARC 144126087 + 144126067 144126107 41 ACCTGCCCTCTGCCCTGGCACCCCAGGGACTCACTGCCAAA ACCTGCCCTCTGCCCTGGCACTCCAGGGACTCACTGCCAAA < 41bp 0.516338483249012 0.763340757673926 0.1943067 0.94191414 prediction 0.494004548849829 Functional Gain - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144126087 chr8:144126088 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_109127 0 0 0 4 144126084 144126105 mRNA hsa-miR-449a C8orf31 miRanda miRanda
8619 chr8 144126088 144126088 1 + C T SARC 144126087 + 144126067 144126107 41 ACCTGCCCTCTGCCCTGGCACCCCAGGGACTCACTGCCAAA ACCTGCCCTCTGCCCTGGCACTCCAGGGACTCACTGCCAAA < 41bp 0.516338483249012 0.763340757673926 0.1943067 0.94191414 prediction 0.494004548849829 Functional Gain - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144126087 chr8:144126088 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_109127 0 0 0 4 144126084 144126105 mRNA hsa-miR-449b C8orf31 miRanda miRanda
8620 chr4 71511650 71511650 1 + C G rs116148244 71511649 + 71511629 71511669 41 ATGAGGAACTGAAGAAACTGCCGCTCTGAGACTGCACATCC ATGAGGAACTGAAGAAACTGCGGCTCTGAGACTGCACATCC < 41bp 0.531542803351774 0.778539551121584 0.25950798 0.5444592 prediction 0.493993495539622 Functional Gain - ENAM ENSG00000132464 UTR3 Human protein_coding chr4:71511649 chr4:71511650 . . 0 22 hm5C_associated_SNPs_109129 0 0 0 1 71511645 71511667 mRNA hsa-miR-210 ENAM miRanda miRanda
8621 chr12 10468809 10468809 1 + C G rs571026054 10468808 + 10468788 10468828 41 TGTTATTTAGTGTACTCCAACCACGGAGTAACATCCCATCA TGTTATTTAGTGTACTCCAACGACGGAGTAACATCCCATCA < 41bp 0.485447072232973 0.746981140250632 0.16270244 0.30285838 prediction 0.493962280501264 Functional Gain - KLRD1 ENSG00000134539 UTR3 Human protein_coding chr12:10468808 chr12:10468809 . . 0 22 hm5C_associated_SNPs_109135 0 0 0 1 10468808 10468830 mRNA hsa-miR-299-3p KLRD1 miRanda miRanda
8622 chr14 78392291 78392291 1 + T C LUAD 78392289 + 78392269 78392309 41 AGAGGCATCAGCCAAGCTCCCGTCACTGCCACTGAGGTAGG AGAGGCATCAGCCAAGCTCCCGCCACTGCCACTGAGGTAGG < 41bp 0.55308882564818 0.799946414281781 0.1889815 0.30352205 prediction 0.493715177267203 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78392289 chr14:78392291 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_109175 0 0 1 5 78392276 78392299 mRNA hsa-miR-34a ADCK1 miRanda miRanda
8623 chr14 78392291 78392291 1 + T C LUAD 78392289 + 78392269 78392309 41 AGAGGCATCAGCCAAGCTCCCGTCACTGCCACTGAGGTAGG AGAGGCATCAGCCAAGCTCCCGCCACTGCCACTGAGGTAGG < 41bp 0.55308882564818 0.799946414281781 0.1889815 0.30352205 prediction 0.493715177267203 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78392289 chr14:78392291 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_109175 0 0 1 5 78392280 78392303 mRNA hsa-miR-152 ADCK1 miRanda miRanda
8624 chr14 78392291 78392291 1 + T C LUAD 78392289 + 78392269 78392309 41 AGAGGCATCAGCCAAGCTCCCGTCACTGCCACTGAGGTAGG AGAGGCATCAGCCAAGCTCCCGCCACTGCCACTGAGGTAGG < 41bp 0.55308882564818 0.799946414281781 0.1889815 0.30352205 prediction 0.493715177267203 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78392289 chr14:78392291 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_109175 0 0 1 5 78392272 78392299 mRNA hsa-miR-34c-5p ADCK1 miRanda miRanda
8625 chr14 78392291 78392291 1 + T C LUAD 78392289 + 78392269 78392309 41 AGAGGCATCAGCCAAGCTCCCGTCACTGCCACTGAGGTAGG AGAGGCATCAGCCAAGCTCCCGCCACTGCCACTGAGGTAGG < 41bp 0.55308882564818 0.799946414281781 0.1889815 0.30352205 prediction 0.493715177267203 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78392289 chr14:78392291 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_109175 0 0 1 5 78392280 78392299 mRNA hsa-miR-449a ADCK1 miRanda miRanda
8626 chr14 78392291 78392291 1 + T C LUAD 78392289 + 78392269 78392309 41 AGAGGCATCAGCCAAGCTCCCGTCACTGCCACTGAGGTAGG AGAGGCATCAGCCAAGCTCCCGCCACTGCCACTGAGGTAGG < 41bp 0.55308882564818 0.799946414281781 0.1889815 0.30352205 prediction 0.493715177267203 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78392289 chr14:78392291 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_109175 0 0 1 5 78392280 78392299 mRNA hsa-miR-449b ADCK1 miRanda miRanda
8627 chr14 74167512 74167512 1 + T G rs77394145 74167510 + 74167490 74167530 41 TGTTTAATGTGTCTGTAAATCATGAAATATAAAAGCAAGAT TGTTTAATGTGTCTGTAAATCAGGAAATATAAAAGCAAGAT < 41bp 0.553418000291024 0.800194939109758 0.26296675 0.8234179 prediction 0.493553877637467 Functional Gain - DNAL1 ENSG00000119661 UTR3 Human protein_coding chr14:74167510 chr14:74167512 . . 0 23 hm5C_associated_SNPs_109195 1 0 1 1 74167494 74167515 mRNA hsa-miR-433 DNAL1 miRanda miRanda
8628 chr17 57270979 57270979 1 + C G CESC 57270975 + 57270955 57270995 41 TCCAAAGCTGTGCTTCCTCCCACACTGCCACAGCCAGCCAG TCCAAAGCTGTGCTTCCTCCCACAGTGCCACAGCCAGCCAG < 41bp 0.457952534368296 0.746605733967689 0.108665526 0.31320935 prediction 0.493211467935379 Functional Gain - PRR11 ENSG00000068489 CDS Human protein_coding chr17:57270975 chr17:57270979 nonsynonymous SNV 0.015 0 25 hm5C_associated_SNPs_109232 0 0 1 4 57270963 57270984 mRNA hsa-miR-34a PRR11 miRanda miRanda
8629 chr17 57270979 57270979 1 + C G CESC 57270975 + 57270955 57270995 41 TCCAAAGCTGTGCTTCCTCCCACACTGCCACAGCCAGCCAG TCCAAAGCTGTGCTTCCTCCCACAGTGCCACAGCCAGCCAG < 41bp 0.457952534368296 0.746605733967689 0.108665526 0.31320935 prediction 0.493211467935379 Functional Gain - PRR11 ENSG00000068489 CDS Human protein_coding chr17:57270975 chr17:57270979 nonsynonymous SNV 0.015 0 25 hm5C_associated_SNPs_109232 0 0 1 4 57270962 57270984 mRNA hsa-miR-34c-5p PRR11 miRanda miRanda
8630 chr17 57270979 57270979 1 + C G CESC 57270975 + 57270955 57270995 41 TCCAAAGCTGTGCTTCCTCCCACACTGCCACAGCCAGCCAG TCCAAAGCTGTGCTTCCTCCCACAGTGCCACAGCCAGCCAG < 41bp 0.457952534368296 0.746605733967689 0.108665526 0.31320935 prediction 0.493211467935379 Functional Gain - PRR11 ENSG00000068489 CDS Human protein_coding chr17:57270975 chr17:57270979 nonsynonymous SNV 0.015 0 25 hm5C_associated_SNPs_109232 0 0 1 4 57270963 57270984 mRNA hsa-miR-449a PRR11 miRanda miRanda
8631 chr17 57270979 57270979 1 + C G CESC 57270975 + 57270955 57270995 41 TCCAAAGCTGTGCTTCCTCCCACACTGCCACAGCCAGCCAG TCCAAAGCTGTGCTTCCTCCCACAGTGCCACAGCCAGCCAG < 41bp 0.457952534368296 0.746605733967689 0.108665526 0.31320935 prediction 0.493211467935379 Functional Gain - PRR11 ENSG00000068489 CDS Human protein_coding chr17:57270975 chr17:57270979 nonsynonymous SNV 0.015 0 25 hm5C_associated_SNPs_109232 0 0 1 4 57270963 57270984 mRNA hsa-miR-449b PRR11 miRanda miRanda
8632 chr10 1038588 1038588 1 + C T SKCM 1038587 + 1038567 1038607 41 TCACAAATTCTAACAGATTTCCCCAAATTGGATGTAAGTGA TCACAAATTCTAACAGATTTCTCCAAATTGGATGTAAGTGA < 41bp 0.498220242801378 0.746518985428378 0.10387632 0.94310385 prediction 0.493037970856755 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1038587 chr10:1038588 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_109266 0 0 1 1 1038572 1038593 mRNA hsa-miR-491-5p GTPBP4 miRanda miRanda
8633 chr16 22926672 22926672 1 + T G GBM 22926670 + 22926650 22926690 41 TTCCTGGGCATTAAGAGATTCATCACGGACAAGCACTTCTA TTCCTGGGCATTAAGAGATTCAGCACGGACAAGCACTTCTA < 41bp 0.40898601330475 0.746423322203048 0.13190699 0.25459498 prediction 0.492846644406096 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926670 chr16:22926672 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109299 0 0 0 12 22926666 22926688 mRNA hsa-miR-302a HS3ST2 miRanda miRanda
8634 chr16 22926672 22926672 1 + T G GBM 22926670 + 22926650 22926690 41 TTCCTGGGCATTAAGAGATTCATCACGGACAAGCACTTCTA TTCCTGGGCATTAAGAGATTCAGCACGGACAAGCACTTCTA < 41bp 0.40898601330475 0.746423322203048 0.13190699 0.25459498 prediction 0.492846644406096 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926670 chr16:22926672 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109299 0 0 0 12 22926664 22926688 mRNA hsa-miR-302b HS3ST2 miRanda miRanda
8635 chr16 22926672 22926672 1 + T G GBM 22926670 + 22926650 22926690 41 TTCCTGGGCATTAAGAGATTCATCACGGACAAGCACTTCTA TTCCTGGGCATTAAGAGATTCAGCACGGACAAGCACTTCTA < 41bp 0.40898601330475 0.746423322203048 0.13190699 0.25459498 prediction 0.492846644406096 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926670 chr16:22926672 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109299 0 0 0 12 22926664 22926688 mRNA hsa-miR-302c HS3ST2 miRanda miRanda
8636 chr16 22926672 22926672 1 + T G GBM 22926670 + 22926650 22926690 41 TTCCTGGGCATTAAGAGATTCATCACGGACAAGCACTTCTA TTCCTGGGCATTAAGAGATTCAGCACGGACAAGCACTTCTA < 41bp 0.40898601330475 0.746423322203048 0.13190699 0.25459498 prediction 0.492846644406096 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926670 chr16:22926672 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109299 0 0 0 12 22926665 22926688 mRNA hsa-miR-302d HS3ST2 miRanda miRanda
8637 chr16 22926672 22926672 1 + T G GBM 22926670 + 22926650 22926690 41 TTCCTGGGCATTAAGAGATTCATCACGGACAAGCACTTCTA TTCCTGGGCATTAAGAGATTCAGCACGGACAAGCACTTCTA < 41bp 0.40898601330475 0.746423322203048 0.13190699 0.25459498 prediction 0.492846644406096 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926670 chr16:22926672 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109299 0 0 0 12 22926666 22926688 mRNA hsa-miR-372 HS3ST2 miRanda miRanda
8638 chr16 22926672 22926672 1 + T G GBM 22926670 + 22926650 22926690 41 TTCCTGGGCATTAAGAGATTCATCACGGACAAGCACTTCTA TTCCTGGGCATTAAGAGATTCAGCACGGACAAGCACTTCTA < 41bp 0.40898601330475 0.746423322203048 0.13190699 0.25459498 prediction 0.492846644406096 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926670 chr16:22926672 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109299 0 0 0 12 22926667 22926688 mRNA hsa-miR-373 HS3ST2 miRanda miRanda
8639 chr16 22926672 22926672 1 + T G GBM 22926670 + 22926650 22926690 41 TTCCTGGGCATTAAGAGATTCATCACGGACAAGCACTTCTA TTCCTGGGCATTAAGAGATTCAGCACGGACAAGCACTTCTA < 41bp 0.40898601330475 0.746423322203048 0.13190699 0.25459498 prediction 0.492846644406096 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926670 chr16:22926672 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109299 0 0 0 12 22926666 22926688 mRNA hsa-miR-520e HS3ST2 miRanda miRanda
8640 chr16 22926672 22926672 1 + T G GBM 22926670 + 22926650 22926690 41 TTCCTGGGCATTAAGAGATTCATCACGGACAAGCACTTCTA TTCCTGGGCATTAAGAGATTCAGCACGGACAAGCACTTCTA < 41bp 0.40898601330475 0.746423322203048 0.13190699 0.25459498 prediction 0.492846644406096 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926670 chr16:22926672 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109299 0 0 0 12 22926667 22926688 mRNA hsa-miR-520a-3p HS3ST2 miRanda miRanda
8641 chr16 22926672 22926672 1 + T G GBM 22926670 + 22926650 22926690 41 TTCCTGGGCATTAAGAGATTCATCACGGACAAGCACTTCTA TTCCTGGGCATTAAGAGATTCAGCACGGACAAGCACTTCTA < 41bp 0.40898601330475 0.746423322203048 0.13190699 0.25459498 prediction 0.492846644406096 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926670 chr16:22926672 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109299 0 0 0 12 22926666 22926688 mRNA hsa-miR-520b HS3ST2 miRanda miRanda
8642 chr16 22926672 22926672 1 + T G GBM 22926670 + 22926650 22926690 41 TTCCTGGGCATTAAGAGATTCATCACGGACAAGCACTTCTA TTCCTGGGCATTAAGAGATTCAGCACGGACAAGCACTTCTA < 41bp 0.40898601330475 0.746423322203048 0.13190699 0.25459498 prediction 0.492846644406096 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926670 chr16:22926672 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109299 0 0 0 12 22926668 22926688 mRNA hsa-miR-520c-3p HS3ST2 miRanda miRanda
8643 chr16 22926672 22926672 1 + T G GBM 22926670 + 22926650 22926690 41 TTCCTGGGCATTAAGAGATTCATCACGGACAAGCACTTCTA TTCCTGGGCATTAAGAGATTCAGCACGGACAAGCACTTCTA < 41bp 0.40898601330475 0.746423322203048 0.13190699 0.25459498 prediction 0.492846644406096 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926670 chr16:22926672 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109299 0 0 0 12 22926667 22926688 mRNA hsa-miR-520d-3p HS3ST2 miRanda miRanda
8644 chr16 22926672 22926672 1 + T G GBM 22926670 + 22926650 22926690 41 TTCCTGGGCATTAAGAGATTCATCACGGACAAGCACTTCTA TTCCTGGGCATTAAGAGATTCAGCACGGACAAGCACTTCTA < 41bp 0.40898601330475 0.746423322203048 0.13190699 0.25459498 prediction 0.492846644406096 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926670 chr16:22926672 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_109299 0 0 0 12 22926670 22926688 mRNA hsa-miR-302e HS3ST2 miRanda miRanda
8645 chr11 113853871 113853871 1 + C T CESC 113853870 + 113853850 113853890 41 TGGGGAAGTCTCCAAATATCCCGTACGTGTATATTCGGCAT TGGGGAAGTCTCCAAATATCCTGTACGTGTATATTCGGCAT < 41bp 0.497839171029437 0.746284669550466 0.005523503 0.011878461 prediction 0.492569339100932 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113853870 chr11:113853871 nonsynonymous SNV 0.543 3 22 hm5C_associated_SNPs_109348 0 0 0 1 113853860 113853880 mRNA hsa-miR-101 HTR3A miRanda miRanda
8646 chr7 152161892 152161892 1 + C G rs558362014 152161888 + 152161868 152161908 41 GGCGGGTCGTCCTGCACTTTCTCCCTCTCCGGTACGGACCG GGCGGGTCGTCCTGCACTTTCTCCGTCTCCGGTACGGACCG < 41bp 0.460732197718222 0.74613754398304 0.2099739 0.5919741 prediction 0.49227508796608 Functional Gain - LINC01003 ENSG00000261455 ncRNA_exonic Human lincRNA chr7:152161888 chr7:152161892 . . 0 25 hm5C_associated_SNPs_109389 0 0 0 1 152161882 152161904 lncRNA hsa-miR-126-3p LINC01003 miRanda starBase2
8647 chr14 58875293 58875293 1 + C A UCEC 58875292 + 58875272 58875312 41 AGGACTGCTTGGAGGATGATCCTGATTGAAAAACATTTCAA AGGACTGCTTGGAGGATGATCATGATTGAAAAACATTTCAA < 41bp 0.513565087330187 0.759663850991118 0.19053769 0.21892282 prediction 0.492197527321862 Functional Gain - TOMM20L ENSG00000196860 CDS Human protein_coding chr14:58875292 chr14:58875293 nonsynonymous SNV 0.746 0 22 hm5C_associated_SNPs_109398 0 0 0 1 58875291 58875312 mRNA hsa-miR-203 TOMM20L miRanda miRanda
8648 chr12 125591759 125591759 1 + T C STAD 125591757 + 125591737 125591777 41 CCCTTCAGCCACCCACTGTTCATCATGTTCTCATCGGGCAC CCCTTCAGCCACCCACTGTTCACCATGTTCTCATCGGGCAC < 41bp 0.580709909136783 0.826800209200826 0.24499914 0.19586906 prediction 0.492180600128086 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125591757 chr12:125591759 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_109400 0 0 1 1 125591746 125591769 mRNA hsa-miR-146a AACS miRanda miRanda
8649 chr4 155487073 155487073 1 + C T LUAD 155487072 + 155487052 155487092 41 TGGCTATCGGGCTCGTCCAGCCAAAGCAGCTGCCACTCAAA TGGCTATCGGGCTCGTCCAGCTAAAGCAGCTGCCACTCAAA < 41bp 0.495171867796343 0.745850747880145 0.5899197 0.44137922 prediction 0.49170149576029 Functional Gain - FGB ENSG00000171564 CDS Human protein_coding chr4:155487072 chr4:155487073 synonymous SNV . 0 22 hm5C_associated_SNPs_109457 0 0 1 4 155487064 155487086 mRNA hsa-miR-34a FGB miRanda miRanda
8650 chr4 155487073 155487073 1 + C T LUAD 155487072 + 155487052 155487092 41 TGGCTATCGGGCTCGTCCAGCCAAAGCAGCTGCCACTCAAA TGGCTATCGGGCTCGTCCAGCTAAAGCAGCTGCCACTCAAA < 41bp 0.495171867796343 0.745850747880145 0.5899197 0.44137922 prediction 0.49170149576029 Functional Gain - FGB ENSG00000171564 CDS Human protein_coding chr4:155487072 chr4:155487073 synonymous SNV . 0 22 hm5C_associated_SNPs_109457 0 0 1 4 155487064 155487086 mRNA hsa-miR-34c-5p FGB miRanda miRanda
8651 chr4 155487073 155487073 1 + C T LUAD 155487072 + 155487052 155487092 41 TGGCTATCGGGCTCGTCCAGCCAAAGCAGCTGCCACTCAAA TGGCTATCGGGCTCGTCCAGCTAAAGCAGCTGCCACTCAAA < 41bp 0.495171867796343 0.745850747880145 0.5899197 0.44137922 prediction 0.49170149576029 Functional Gain - FGB ENSG00000171564 CDS Human protein_coding chr4:155487072 chr4:155487073 synonymous SNV . 0 22 hm5C_associated_SNPs_109457 0 0 1 4 155487067 155487086 mRNA hsa-miR-449a FGB miRanda miRanda
8652 chr4 155487073 155487073 1 + C T LUAD 155487072 + 155487052 155487092 41 TGGCTATCGGGCTCGTCCAGCCAAAGCAGCTGCCACTCAAA TGGCTATCGGGCTCGTCCAGCTAAAGCAGCTGCCACTCAAA < 41bp 0.495171867796343 0.745850747880145 0.5899197 0.44137922 prediction 0.49170149576029 Functional Gain - FGB ENSG00000171564 CDS Human protein_coding chr4:155487072 chr4:155487073 synonymous SNV . 0 22 hm5C_associated_SNPs_109457 0 0 1 4 155487067 155487086 mRNA hsa-miR-449b FGB miRanda miRanda
8653 chr11 6978644 6978644 1 + T A rs144240336 6978640 + 6978620 6978660 41 GCCCTGCAGTGGAATGGCTCCTAATCAGGGTTTGTTCCCAC GCCCTGCAGTGGAATGGCTCCTAAACAGGGTTTGTTCCCAC < 41bp 0.446767656585593 0.745649673999661 0.09757581 0.38658535 prediction 0.491299347999322 Functional Gain - ZNF215 ENSG00000149054 UTR3 Human protein_coding chr11:6978640 chr11:6978644 . . 0 25 hm5C_associated_SNPs_109517 0 0 1 1 6978644 6978664 mRNA hsa-miR-299-3p ZNF215 miRanda miRanda
8654 chr15 58001493 58001493 1 + T C COAD 58001491 + 58001471 58001511 41 ACTGAGAAGAAACCTCATTACATGGAAGTGCTAGAAATGCG ACTGAGAAGAAACCTCATTACACGGAAGTGCTAGAAATGCG < 41bp 0.496957114309187 0.745532375050387 0.23941022 0.17868337 prediction 0.491064750100773 Functional Gain - GCOM1;POLR2M ENSG00000137878;ENSG00000255529 CDS Human other chr15:58001491 chr15:58001493 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_109547 0 0 1 1 58001484 58001507 mRNA hsa-miR-544 GRINL1A miRanda miRanda
8655 chr12 104153016 104153016 1 + C A THCA 104153012 + 104152992 104153032 41 CTGCAAACGAGGCTGGGAAGCAAGCTGCTCATCACTGCCAG CTGCAAACGAGGCTGGGAAGCAAGATGCTCATCACTGCCAG < 41bp 0.373832417279544 0.745472690918068 0.5143787 0.7791357 prediction 0.490945381836136 Functional Gain - STAB2 ENSG00000136011 CDS Human protein_coding chr12:104153012 chr12:104153016 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_109571 0 0 0 1 104153007 104153031 mRNA hsa-miR-34c-5p STAB2 miRanda miRanda
8656 chr1 236706943 236706943 1 + C G MESO 236706942 + 236706922 236706962 41 AGGAGAAGTGAATGCAAATGCCAAAAGGTCAGTATCCTTCG AGGAGAAGTGAATGCAAATGCGAAAAGGTCAGTATCCTTCG < 41bp 0.443817091424521 0.745436518358378 0.05736813 0.14706904 prediction 0.490873036716756 Functional Gain - LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236706942 chr1:236706943 synonymous SNV . 0 22 hm5C_associated_SNPs_109579 0 0 0 1 236706942 236706948 mRNA hsa-miR-505 LGALS8 miRanda miRanda
8657 chr16 2015002 2015002 1 + C G rs61749488 2014998 + 2014978 2015018 41 TGCCCGTCCGGCCCCAGCCGCGGCCCGGGAATCTACGTCAC TGCCCGTCCGGCCCCAGCCGCGGCGCGGGAATCTACGTCAC < 41bp 0.564238939881755 0.809658313541809 0.42610282 0.81632674 prediction 0.490838747320109 Functional Gain - SNHG9 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2014998 chr16:2015002 . . 0 25 hm5C_associated_SNPs_109584 0 0 1 1 2014995 2015016 lncRNA hsa-miR-1277-3p SNHG9 miRanda starBase2
8658 chr10 70932366 70932366 1 + T G rs550048289 70932364 + 70932344 70932384 41 ATAAAATGGTCAGGAACCAACTTTACTGGCAAAAGGGTCCA ATAAAATGGTCAGGAACCAACTGTACTGGCAAAAGGGTCCA < 41bp 0.554189807219621 0.799218294980591 0.15616232 0.28303665 prediction 0.490056975521941 Functional Gain - VPS26A ENSG00000122958 UTR3 Human protein_coding chr10:70932364 chr10:70932366 . . 0 23 hm5C_associated_SNPs_109692 0 0 1 1 70932345 70932367 mRNA hsa-miR-382 VPS26A miRanda miRanda
8659 chr5 170163172 170163172 1 + C A rs181254216 170163168 + 170163148 170163188 41 CCAGCCCACTGCCTCCAAGTCAGGCAGACCTTGGTGAATCT CCAGCCCACTGCCTCCAAGTCAGGAAGACCTTGGTGAATCT < 41bp 0.656824968890364 0.901839144249627 0.8803253 0.91682374 prediction 0.490028350718526 Functional Gain - KCNIP1 ENSG00000182132 UTR3 Human protein_coding chr5:170163168 chr5:170163172 . . 0 25 hm5C_associated_SNPs_109699 0 0 0 1 170163154 170163177 mRNA hsa-miR-346 KCNIP1 miRanda miRanda
8660 chr11 107833956 107833956 1 + C G rs555991087 107833955 + 107833935 107833975 41 TGCAGATGTGCGCCACCATGCCCGGCTAATTTTTGTATTAT TGCAGATGTGCGCCACCATGCGCGGCTAATTTTTGTATTAT < 41bp 0.544048296066706 0.788912400569784 0.073908985 0.6248778 prediction 0.489728209006155 Functional Gain - RAB39A ENSG00000179331 UTR3 Human protein_coding chr11:107833955 chr11:107833956 . . 0 22 hm5C_associated_SNPs_109744 0 0 0 1 107833956 107833977 mRNA hsa-miR-374b RAB39 miRanda miRanda
8661 chr7 99017041 99017041 1 - G T LUSC 99017042 - 99017022 99017062 41 AGCCAGAGCAGCCACGACAGCCACAGTGTGTGCACTCGATG AGCCAGAGCAGCCACGACAGCAACAGTGTGTGCACTCGATG < 41bp 0.548747089673911 0.79350437755387 0.19198051 0.16241014 prediction 0.489514575759918 Functional Gain - BUD31 ENSG00000106245 CDS Human protein_coding chr7:99017042 chr7:99017041 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_109782 0 0 1 1 99017026 99017049 mRNA hsa-miR-454 PTCD1 miRanda miRanda
8662 chrX 151908915 151908915 1 + T C CESC 151908913 + 151908893 151908933 41 CCCATTTTCCAACAACCACCCATCAACACCAAAGAGGCGAG CCCATTTTCCAACAACCACCCACCAACACCAAAGAGGCGAG < 41bp 0.534908510839064 0.779436186722433 0.029019088 0.029743522 prediction 0.489055351766738 Functional Gain - CSAG1 ENSG00000198930 CDS Human protein_coding chrX:151908913 chrX:151908915 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_109865 0 0 1 1 151908904 151908927 mRNA hsa-miR-9 CSAG1 miRanda miRanda
8663 chr19 7710134 7710134 1 + C A rs141309384 7710130 + 7710110 7710150 41 TGATCCAGCATGCCAATGTACAGGCGCACAGCAGCCTCATC TGATCCAGCATGCCAATGTACAGGAGCACAGCAGCCTCATC < 41bp 0.682931898245187 0.927090411605983 0.78367746 0.7082665 prediction 0.488317026721593 Functional Gain - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7710130 chr19:7710134 nonsynonymous SNV 0.558 0 25 hm5C_associated_SNPs_109968 0 0 0 2 7710128 7710148 mRNA hsa-miR-485-5p STXBP2 miRanda miRanda
8664 chr19 7710134 7710134 1 + C A rs141309384 7710130 + 7710110 7710150 41 TGATCCAGCATGCCAATGTACAGGCGCACAGCAGCCTCATC TGATCCAGCATGCCAATGTACAGGAGCACAGCAGCCTCATC < 41bp 0.682931898245187 0.927090411605983 0.78367746 0.7082665 prediction 0.488317026721593 Functional Gain - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7710130 chr19:7710134 nonsynonymous SNV 0.558 0 25 hm5C_associated_SNPs_109968 0 0 0 2 7710111 7710134 mRNA hsa-miR-486-5p STXBP2 miRanda miRanda
8665 chr5 168451703 168451703 1 + C G rs563648658 168451699 + 168451679 168451719 41 CCTGGGCTCTGTGCCTTGCCCAAGCTGTCACACGCACCACA CCTGGGCTCTGTGCCTTGCCCAAGGTGTCACACGCACCACA < 41bp 0.458399825069876 0.743912397151618 0.6169712 0.92495406 prediction 0.487824794303235 Functional Gain - LOC728095 ENSG00000248222 ncRNA_exonic Human antisense chr5:168451699 chr5:168451703 . . 0 25 hm5C_associated_SNPs_110060 0 0 0 1 168451689 168451710 mRNA hsa-miR-542-3p LOC728095 miRanda miRanda
8666 chr17 25637136 25637136 1 + C G BRCA 25637135 + 25637115 25637155 41 TTTGCTGGAGGAGCAAATGACCGGTGGGTACGATCTGTATC TTTGCTGGAGGAGCAAATGACGGGTGGGTACGATCTGTATC < 41bp 0.607862530640401 0.851739911354012 0.44043577 0.92402005 prediction 0.487754761427221 Functional Gain - WSB1 ENSG00000109046 CDS Human protein_coding chr17:25637135 chr17:25637136 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_110066 0 0 1 1 25637126 25637147 mRNA hsa-miR-551a WSB1 miRanda miRanda
8667 chr6 135516954 135516954 1 + T A LUSC 135516950 + 135516930 135516970 41 CATTGCCGACCACACCAGACCTCATGGAGACAGTGCACCTG CATTGCCGACCACACCAGACCTCAAGGAGACAGTGCACCTG < 41bp 0.588259557222616 0.831893898054102 0.20201826 0.13856769 prediction 0.487268681662972 Functional Gain - MYB ENSG00000118513 CDS Human protein_coding chr6:135516950 chr6:135516954 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_110150 0 0 1 2 135516947 135516968 mRNA hsa-miR-134 MYB miRanda miRanda
8668 chr6 135516954 135516954 1 + T A LUSC 135516950 + 135516930 135516970 41 CATTGCCGACCACACCAGACCTCATGGAGACAGTGCACCTG CATTGCCGACCACACCAGACCTCAAGGAGACAGTGCACCTG < 41bp 0.588259557222616 0.831893898054102 0.20201826 0.13856769 prediction 0.487268681662972 Functional Gain - MYB ENSG00000118513 CDS Human protein_coding chr6:135516950 chr6:135516954 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_110150 0 0 1 2 135516954 135516978 mRNA hsa-miR-873 MYB miRanda miRanda
8669 chr17 37818555 37818555 1 + C T SKCM 37818554 + 37818534 37818574 41 GCTCAAGTCGGCCAGTAACCCCCGTGTTTGCACCTTTGTCT GCTCAAGTCGGCCAGTAACCCTCGTGTTTGCACCTTTGTCT < 41bp 0.490442499425051 0.743549598187797 0.21581727 0.2499603 prediction 0.487099196375594 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37818554 chr17:37818555 synonymous SNV . 0 22 hm5C_associated_SNPs_110179 0 0 1 4 37818548 37818570 mRNA hsa-miR-18a STARD3 miRanda miRanda
8670 chr17 37818555 37818555 1 + C T SKCM 37818554 + 37818534 37818574 41 GCTCAAGTCGGCCAGTAACCCCCGTGTTTGCACCTTTGTCT GCTCAAGTCGGCCAGTAACCCTCGTGTTTGCACCTTTGTCT < 41bp 0.490442499425051 0.743549598187797 0.21581727 0.2499603 prediction 0.487099196375594 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37818554 chr17:37818555 synonymous SNV . 0 22 hm5C_associated_SNPs_110179 0 0 1 4 37818545 37818567 mRNA hsa-miR-19a STARD3 miRanda miRanda
8671 chr17 37818555 37818555 1 + C T SKCM 37818554 + 37818534 37818574 41 GCTCAAGTCGGCCAGTAACCCCCGTGTTTGCACCTTTGTCT GCTCAAGTCGGCCAGTAACCCTCGTGTTTGCACCTTTGTCT < 41bp 0.490442499425051 0.743549598187797 0.21581727 0.2499603 prediction 0.487099196375594 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37818554 chr17:37818555 synonymous SNV . 0 22 hm5C_associated_SNPs_110179 0 0 1 4 37818545 37818567 mRNA hsa-miR-19b STARD3 miRanda miRanda
8672 chr17 37818555 37818555 1 + C T SKCM 37818554 + 37818534 37818574 41 GCTCAAGTCGGCCAGTAACCCCCGTGTTTGCACCTTTGTCT GCTCAAGTCGGCCAGTAACCCTCGTGTTTGCACCTTTGTCT < 41bp 0.490442499425051 0.743549598187797 0.21581727 0.2499603 prediction 0.487099196375594 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37818554 chr17:37818555 synonymous SNV . 0 22 hm5C_associated_SNPs_110179 0 0 1 4 37818548 37818570 mRNA hsa-miR-18b STARD3 miRanda miRanda
8673 chr14 105927123 105927123 1 + C T SKCM 105927122 + 105927102 105927142 41 TTCCACGCCATGGATACTCTCCACAAGAACATCTACGACAT TTCCACGCCATGGATACTCTCTACAAGAACATCTACGACAT < 41bp 0.562483503580617 0.805712149689879 0.049101025 0.6969 prediction 0.486457292218525 Functional Gain - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105927122 chr14:105927123 nonsynonymous SNV 0.061 1 22 hm5C_associated_SNPs_110256 0 0 1 1 105927102 105927123 mRNA hsa-miR-202 MTA1 miRanda miRanda
8674 chr1 222923301 222923301 1 + C A COAD 222923300 + 222923280 222923320 41 TGAAAGGAGAGGATCAAAGGCCCAGGCAGCTGAGGTTCCTA TGAAAGGAGAGGATCAAAGGCACAGGCAGCTGAGGTTCCTA < 41bp 0.489212515157894 0.743207507197238 0.04110816 0.09836924 prediction 0.486415014394477 Functional Gain - FAM177B ENSG00000197520 CDS Human protein_coding chr1:222923300 chr1:222923301 synonymous SNV . 0 22 hm5C_associated_SNPs_110263 0 0 0 1 222923290 222923311 mRNA hsa-miR-22 FAM177B miRanda miRanda
8675 chr2 207514153 207514153 1 + T G rs34068732 207514150 + 207514130 207514170 41 TATCACTAATGACATCCAAACTCTAATAAAATAATGTTTAA TATCACTAATGACATCCAAACTCGAATAAAATAATGTTTAA < 41bp 0.487375206591415 0.743136259389383 0.74350893 0.37221086 prediction 0.486272518778765 Functional Gain - FAM237A ENSG00000235118 ncRNA_exonic Human protein_coding chr2:207514150 chr2:207514153 . . 0 24 hm5C_associated_SNPs_110276 0 0 0 2 207514144 207514163 mRNA hsa-miR-590-3p LOC200726 miRanda miRanda
8676 chr2 207514153 207514153 1 + T G rs34068732 207514150 + 207514130 207514170 41 TATCACTAATGACATCCAAACTCTAATAAAATAATGTTTAA TATCACTAATGACATCCAAACTCGAATAAAATAATGTTTAA < 41bp 0.487375206591415 0.743136259389383 0.74350893 0.37221086 prediction 0.486272518778765 Functional Gain - FAM237A ENSG00000235118 ncRNA_exonic Human protein_coding chr2:207514150 chr2:207514153 . . 0 24 hm5C_associated_SNPs_110276 0 0 0 2 207514147 207514168 mRNA hsa-miR-543 LOC200726 miRanda miRanda
8677 chr5 128957926 128957926 1 + C T rs115634132 128957925 + 128957905 128957945 41 ACTGCTTGCTACAAACAAATCCGCAGAGTGTCAATTCTGTG ACTGCTTGCTACAAACAAATCTGCAGAGTGTCAATTCTGTG < 41bp 0.543050544089948 0.786058964046412 0.11433467 0.08484438 prediction 0.486016839912929 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128957925 chr5:128957926 nonsynonymous SNV 0.690 3 22 hm5C_associated_SNPs_110305 0 0 0 1 128957918 128957940 mRNA hsa-miR-32 ADAMTS19 miRanda miRanda
8678 chr2 127453543 127453543 1 + T C rs115201071 127453541 + 127453521 127453561 41 GGTGTGATTGCTGCTGTGGCCATCGTCCTAGTCTCCCTCCT GGTGTGATTGCTGCTGTGGCCACCGTCCTAGTCTCCCTCCT < 41bp 0.54079050418991 0.783398119843382 0.1149348 0.110987574 prediction 0.485215231306943 Functional Gain - GYPC ENSG00000136732 CDS Human protein_coding chr2:127453541 chr2:127453543 nonsynonymous SNV 0.007 1 23 hm5C_associated_SNPs_110443 0 0 1 1 127453523 127453544 mRNA hsa-miR-183 GYPC miRanda miRanda
8679 chr1 179339176 179339176 1 + C T SKCM 179339175 + 179339155 179339195 41 CGAAGGAATAAATTCAAATACCTGATTGACCATCCCGTCTC CGAAGGAATAAATTCAAATACTTGATTGACCATCCCGTCTC < 41bp 0.52482443399833 0.767427603140266 0.15372774 0.21510357 prediction 0.485206338283872 Functional Gain - AXDND1 ENSG00000162779 CDS Human protein_coding chr1:179339175 chr1:179339176 synonymous SNV . 0 22 hm5C_associated_SNPs_110446 0 0 0 1 179339159 179339184 mRNA hsa-miR-421 C1orf125 miRanda miRanda
8680 chr16 22926579 22926579 1 + C A UCEC 22926575 + 22926555 22926595 41 GCTGGCTGCAGTACTTCCCGCTAGCTCAGATTCACTTCGTC GCTGGCTGCAGTACTTCCCGCTAGATCAGATTCACTTCGTC < 41bp 0.32857260866452 0.742537076995618 0.18534863 0.155393 prediction 0.485074153991236 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926575 chr16:22926579 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_110462 0 0 0 1 22926560 22926581 mRNA hsa-miR-503 HS3ST2 miRanda miRanda
8681 chr3 136701039 136701039 1 + C T SARC 136701038 + 136701018 136701058 41 TACACGAGCCACATCTGGATCCCCAGCAGCTGGTGCTCACT TACACGAGCCACATCTGGATCTCCAGCAGCTGGTGCTCACT < 41bp 0.465977325725116 0.742421515739589 0.016827762 0.9497814 prediction 0.484843031479179 Functional Gain - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136701038 chr3:136701039 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_110498 0 0 0 4 136701034 136701055 mRNA hsa-miR-29a IL20RB miRanda miRanda
8682 chr3 136701039 136701039 1 + C T SARC 136701038 + 136701018 136701058 41 TACACGAGCCACATCTGGATCCCCAGCAGCTGGTGCTCACT TACACGAGCCACATCTGGATCTCCAGCAGCTGGTGCTCACT < 41bp 0.465977325725116 0.742421515739589 0.016827762 0.9497814 prediction 0.484843031479179 Functional Gain - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136701038 chr3:136701039 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_110498 0 0 0 4 136701033 136701055 mRNA hsa-miR-29b IL20RB miRanda miRanda
8683 chr3 136701039 136701039 1 + C T SARC 136701038 + 136701018 136701058 41 TACACGAGCCACATCTGGATCCCCAGCAGCTGGTGCTCACT TACACGAGCCACATCTGGATCTCCAGCAGCTGGTGCTCACT < 41bp 0.465977325725116 0.742421515739589 0.016827762 0.9497814 prediction 0.484843031479179 Functional Gain - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136701038 chr3:136701039 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_110498 0 0 0 4 136701034 136701055 mRNA hsa-miR-29c IL20RB miRanda miRanda
8684 chr3 136701039 136701039 1 + C T SARC 136701038 + 136701018 136701058 41 TACACGAGCCACATCTGGATCCCCAGCAGCTGGTGCTCACT TACACGAGCCACATCTGGATCTCCAGCAGCTGGTGCTCACT < 41bp 0.465977325725116 0.742421515739589 0.016827762 0.9497814 prediction 0.484843031479179 Functional Gain - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136701038 chr3:136701039 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_110498 0 0 0 4 136701017 136701039 mRNA hsa-miR-383 IL20RB miRanda miRanda
8685 chr1 230391063 230391063 1 + C T STAD 230391062 + 230391042 230391082 41 AGCAGCACCCCTACACGTTCCCGGGTGGCAGTGGCACTGTC AGCAGCACCCCTACACGTTCCTGGGTGGCAGTGGCACTGTC < 41bp 0.519736731055323 0.762102062845697 0.8714858 0.6577535 prediction 0.484730663580746 Functional Gain - GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230391062 chr1:230391063 nonsynonymous SNV 0.871 4 22 hm5C_associated_SNPs_110523 0 0 1 1 230391056 230391078 mRNA hsa-miR-874 GALNT2 miRanda miRanda
8686 chr1 45974755 45974755 1 + C G THCA 45974754 + 45974734 45974774 41 CCTATTGGGCTTGGCTCAGCCCTCAGAGAAGCCTAGTTCTC CCTATTGGGCTTGGCTCAGCCGTCAGAGAAGCCTAGTTCTC < 41bp 0.433933190757928 0.742244639517207 0.032671124 0.05326554 prediction 0.484489279034414 Functional Gain - MMACHC ENSG00000132763 CDS Human protein_coding chr1:45974754 chr1:45974755 synonymous SNV . 0 22 hm5C_associated_SNPs_110560 0 0 0 1 45974735 45974758 mRNA hsa-miR-485-5p MMACHC miRanda miRanda
8687 chrX 281879 281879 1 + C A rs750298758 281878 + 281858 281898 41 GCCCAGGAGTTTGACACCAGCCTGGGCAACATGGTAAGACC GCCCAGGAGTTTGACACCAGCATGGGCAACATGGTAAGACC < 41bp 0.526674777253237 0.768769815603228 0.17814147 0.45007718 prediction 0.484190076699982 Functional Gain - LINC00685 ENSG00000226179 ncRNA_exonic Human antisense chrX:281878 chrX:281879 . . 0 22 hm5C_associated_SNPs_110597 0 0 0 1 281857 281879 mRNA hsa-miR-138 NCRNA00107 miRanda miRanda
8688 chr4 140661867 140661867 1 + C A rs146152879 140661863 + 140661843 140661883 41 TTAATAGACAAGAGCACCACCACGCTGCCAAATGGAGCTCT TTAATAGACAAGAGCACCACCACGATGCCAAATGGAGCTCT < 41bp 0.64729461312258 0.889338567689964 0.027807087 0.2461634 prediction 0.484087909134768 Functional Gain - MGST2 ENSG00000196782 intronic Human protein_coding chr4:140661863 chr4:140661867 . . 0 25 hm5C_associated_SNPs_110615 0 0 0 1 140661858 140661880 mRNA hsa-miR-136 MGST2 miRanda miRanda
8689 chr12 32446976 32446976 1 + C A UCEC 32446975 + 32446955 32446995 41 ATACGGATGAAGGATGAAATCCGAGAATATAAGTTCCGGGA ATACGGATGAAGGATGAAATCAGAGAATATAAGTTCCGGGA < 41bp 0.483927267055049 0.741946089329384 0.54214716 0.8878741 prediction 0.483892178658768 Functional Gain - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32446975 chr12:32446976 synonymous SNV . 0 22 hm5C_associated_SNPs_110644 0 0 0 1 32446956 32446977 mRNA hsa-miR-876-5p BICD1 miRanda miRanda
8690 chr9 96440358 96440358 1 + C A rs143119371 96440357 + 96440337 96440377 41 AGCCCCAGAGTCAGAGCTGGCCACAGGCTGGCAGCCTCCAG AGCCCCAGAGTCAGAGCTGGCAACAGGCTGGCAGCCTCCAG < 41bp 0.483487088019932 0.741893211318737 0.5054242 0.7408915 prediction 0.483786422637474 Functional Gain - PHF2 ENSG00000197724 UTR3 Human protein_coding chr9:96440357 chr9:96440358 . . 0 22 hm5C_associated_SNPs_110657 0 0 1 2 96440357 96440380 mRNA hsa-miR-125b PHF2 miRanda miRanda
8691 chr9 96440358 96440358 1 + C A rs143119371 96440357 + 96440337 96440377 41 AGCCCCAGAGTCAGAGCTGGCCACAGGCTGGCAGCCTCCAG AGCCCCAGAGTCAGAGCTGGCAACAGGCTGGCAGCCTCCAG < 41bp 0.483487088019932 0.741893211318737 0.5054242 0.7408915 prediction 0.483786422637474 Functional Gain - PHF2 ENSG00000197724 UTR3 Human protein_coding chr9:96440357 chr9:96440358 . . 0 22 hm5C_associated_SNPs_110657 0 0 1 2 96440357 96440380 mRNA hsa-miR-125a-5p PHF2 miRanda miRanda
8692 chr12 50157088 50157088 1 + A G rs376195970 50157085 + 50157065 50157105 41 CCTCATTGTTGTTTGGTATGCGCACAGTTCCTGTGGGACTG CCTCATTGTTGTTTGGTATGCGCGCAGTTCCTGTGGGACTG < 41bp 0.511220571792597 0.753098775080844 0.12220976 0.23461977 prediction 0.483756406576494 Functional Gain - TMBIM6 ENSG00000139644 UTR3 Human protein_coding chr12:50157085 chr12:50157088 . . 0 24 hm5C_associated_SNPs_110660 0 0 1 1 50157077 50157098 mRNA hsa-miR-873 TMBIM6 miRanda miRanda
8693 chr14 66082952 66082952 1 + C A UCEC 66082951 + 66082931 66082971 41 CTGGGGAAGGATCATGAAATCCTGAGGAGGAGGATTGAAAA CTGGGGAAGGATCATGAAATCATGAGGAGGAGGATTGAAAA < 41bp 0.508904085160815 0.750667390838374 0.27456427 0.22505683 prediction 0.483526611355117 Functional Gain - FUT8 ENSG00000033170 CDS Human protein_coding chr14:66082951 chr14:66082952 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_110691 0 0 1 1 66082932 66082953 mRNA hsa-miR-876-5p FUT8 miRanda miRanda
8694 chr19 35837705 35837705 1 + A G rs35529786 35837702 + 35837682 35837722 41 CTTCCTCCTGCGCGCATGTGCGCACACACACACACACACGC CTTCCTCCTGCGCGCATGTGCGCGCACACACACACACACGC < 41bp 0.507797607622489 0.749551085171847 0.11097035 0.21438402 prediction 0.483506955098715 Functional Gain - CD22 ENSG00000012124 UTR3 Human protein_coding chr19:35837702 chr19:35837705 . . 0 24 hm5C_associated_SNPs_110695 0 0 0 1 35837705 35837726 mRNA hsa-miR-210 CD22 miRanda miRanda
8695 chr6 71298586 71298586 1 + T A rs141029330 71298582 + 71298562 71298602 41 TGGCTTTGGAAGAAAATATGCTGCTGTAAATTAGGAAAGGG TGGCTTTGGAAGAAAATATGCTGCAGTAAATTAGGAAAGGG < 41bp 0.54982940338446 0.791508368664618 0.0858382 0.051712632 prediction 0.483357930560316 Functional Gain - SDHAF4 ENSG00000154079 UTR3 Human protein_coding chr6:71298582 chr6:71298586 . . 0 25 hm5C_associated_SNPs_110717 0 0 1 14 71298566 71298587 mRNA hsa-miR-15a C6orf57 miRanda miRanda
8696 chr6 71298586 71298586 1 + T A rs141029330 71298582 + 71298562 71298602 41 TGGCTTTGGAAGAAAATATGCTGCTGTAAATTAGGAAAGGG TGGCTTTGGAAGAAAATATGCTGCAGTAAATTAGGAAAGGG < 41bp 0.54982940338446 0.791508368664618 0.0858382 0.051712632 prediction 0.483357930560316 Functional Gain - SDHAF4 ENSG00000154079 UTR3 Human protein_coding chr6:71298582 chr6:71298586 . . 0 25 hm5C_associated_SNPs_110717 0 0 1 14 71298566 71298587 mRNA hsa-miR-16 C6orf57 miRanda miRanda
8697 chr6 71298586 71298586 1 + T A rs141029330 71298582 + 71298562 71298602 41 TGGCTTTGGAAGAAAATATGCTGCTGTAAATTAGGAAAGGG TGGCTTTGGAAGAAAATATGCTGCAGTAAATTAGGAAAGGG < 41bp 0.54982940338446 0.791508368664618 0.0858382 0.051712632 prediction 0.483357930560316 Functional Gain - SDHAF4 ENSG00000154079 UTR3 Human protein_coding chr6:71298582 chr6:71298586 . . 0 25 hm5C_associated_SNPs_110717 0 0 1 14 71298559 71298586 mRNA hsa-miR-103 C6orf57 miRanda miRanda
8698 chr6 71298586 71298586 1 + T A rs141029330 71298582 + 71298562 71298602 41 TGGCTTTGGAAGAAAATATGCTGCTGTAAATTAGGAAAGGG TGGCTTTGGAAGAAAATATGCTGCAGTAAATTAGGAAAGGG < 41bp 0.54982940338446 0.791508368664618 0.0858382 0.051712632 prediction 0.483357930560316 Functional Gain - SDHAF4 ENSG00000154079 UTR3 Human protein_coding chr6:71298582 chr6:71298586 . . 0 25 hm5C_associated_SNPs_110717 0 0 1 14 71298559 71298586 mRNA hsa-miR-107 C6orf57 miRanda miRanda
8699 chr6 71298586 71298586 1 + T A rs141029330 71298582 + 71298562 71298602 41 TGGCTTTGGAAGAAAATATGCTGCTGTAAATTAGGAAAGGG TGGCTTTGGAAGAAAATATGCTGCAGTAAATTAGGAAAGGG < 41bp 0.54982940338446 0.791508368664618 0.0858382 0.051712632 prediction 0.483357930560316 Functional Gain - SDHAF4 ENSG00000154079 UTR3 Human protein_coding chr6:71298582 chr6:71298586 . . 0 25 hm5C_associated_SNPs_110717 0 0 1 14 71298583 71298604 mRNA hsa-miR-204 C6orf57 miRanda miRanda
8700 chr6 71298586 71298586 1 + T A rs141029330 71298582 + 71298562 71298602 41 TGGCTTTGGAAGAAAATATGCTGCTGTAAATTAGGAAAGGG TGGCTTTGGAAGAAAATATGCTGCAGTAAATTAGGAAAGGG < 41bp 0.54982940338446 0.791508368664618 0.0858382 0.051712632 prediction 0.483357930560316 Functional Gain - SDHAF4 ENSG00000154079 UTR3 Human protein_coding chr6:71298582 chr6:71298586 . . 0 25 hm5C_associated_SNPs_110717 0 0 1 14 71298585 71298604 mRNA hsa-miR-211 C6orf57 miRanda miRanda
8701 chr6 71298586 71298586 1 + T A rs141029330 71298582 + 71298562 71298602 41 TGGCTTTGGAAGAAAATATGCTGCTGTAAATTAGGAAAGGG TGGCTTTGGAAGAAAATATGCTGCAGTAAATTAGGAAAGGG < 41bp 0.54982940338446 0.791508368664618 0.0858382 0.051712632 prediction 0.483357930560316 Functional Gain - SDHAF4 ENSG00000154079 UTR3 Human protein_coding chr6:71298582 chr6:71298586 . . 0 25 hm5C_associated_SNPs_110717 0 0 1 14 71298567 71298588 mRNA hsa-miR-214 C6orf57 miRanda miRanda
8702 chr6 71298586 71298586 1 + T A rs141029330 71298582 + 71298562 71298602 41 TGGCTTTGGAAGAAAATATGCTGCTGTAAATTAGGAAAGGG TGGCTTTGGAAGAAAATATGCTGCAGTAAATTAGGAAAGGG < 41bp 0.54982940338446 0.791508368664618 0.0858382 0.051712632 prediction 0.483357930560316 Functional Gain - SDHAF4 ENSG00000154079 UTR3 Human protein_coding chr6:71298582 chr6:71298586 . . 0 25 hm5C_associated_SNPs_110717 0 0 1 14 71298566 71298587 mRNA hsa-miR-15b C6orf57 miRanda miRanda
8703 chr6 71298586 71298586 1 + T A rs141029330 71298582 + 71298562 71298602 41 TGGCTTTGGAAGAAAATATGCTGCTGTAAATTAGGAAAGGG TGGCTTTGGAAGAAAATATGCTGCAGTAAATTAGGAAAGGG < 41bp 0.54982940338446 0.791508368664618 0.0858382 0.051712632 prediction 0.483357930560316 Functional Gain - SDHAF4 ENSG00000154079 UTR3 Human protein_coding chr6:71298582 chr6:71298586 . . 0 25 hm5C_associated_SNPs_110717 0 0 1 14 71298567 71298587 mRNA hsa-miR-195 C6orf57 miRanda miRanda
8704 chr6 71298586 71298586 1 + T A rs141029330 71298582 + 71298562 71298602 41 TGGCTTTGGAAGAAAATATGCTGCTGTAAATTAGGAAAGGG TGGCTTTGGAAGAAAATATGCTGCAGTAAATTAGGAAAGGG < 41bp 0.54982940338446 0.791508368664618 0.0858382 0.051712632 prediction 0.483357930560316 Functional Gain - SDHAF4 ENSG00000154079 UTR3 Human protein_coding chr6:71298582 chr6:71298586 . . 0 25 hm5C_associated_SNPs_110717 0 0 1 14 71298566 71298586 mRNA hsa-miR-338-3p C6orf57 miRanda miRanda
8705 chr6 71298586 71298586 1 + T A rs141029330 71298582 + 71298562 71298602 41 TGGCTTTGGAAGAAAATATGCTGCTGTAAATTAGGAAAGGG TGGCTTTGGAAGAAAATATGCTGCAGTAAATTAGGAAAGGG < 41bp 0.54982940338446 0.791508368664618 0.0858382 0.051712632 prediction 0.483357930560316 Functional Gain - SDHAF4 ENSG00000154079 UTR3 Human protein_coding chr6:71298582 chr6:71298586 . . 0 25 hm5C_associated_SNPs_110717 0 0 1 14 71298580 71298599 mRNA hsa-miR-384 C6orf57 miRanda miRanda
8706 chr6 71298586 71298586 1 + T A rs141029330 71298582 + 71298562 71298602 41 TGGCTTTGGAAGAAAATATGCTGCTGTAAATTAGGAAAGGG TGGCTTTGGAAGAAAATATGCTGCAGTAAATTAGGAAAGGG < 41bp 0.54982940338446 0.791508368664618 0.0858382 0.051712632 prediction 0.483357930560316 Functional Gain - SDHAF4 ENSG00000154079 UTR3 Human protein_coding chr6:71298582 chr6:71298586 . . 0 25 hm5C_associated_SNPs_110717 0 0 1 14 71298566 71298587 mRNA hsa-miR-424 C6orf57 miRanda miRanda
8707 chr6 71298586 71298586 1 + T A rs141029330 71298582 + 71298562 71298602 41 TGGCTTTGGAAGAAAATATGCTGCTGTAAATTAGGAAAGGG TGGCTTTGGAAGAAAATATGCTGCAGTAAATTAGGAAAGGG < 41bp 0.54982940338446 0.791508368664618 0.0858382 0.051712632 prediction 0.483357930560316 Functional Gain - SDHAF4 ENSG00000154079 UTR3 Human protein_coding chr6:71298582 chr6:71298586 . . 0 25 hm5C_associated_SNPs_110717 0 0 1 14 71298567 71298587 mRNA hsa-miR-497 C6orf57 miRanda miRanda
8708 chr6 71298586 71298586 1 + T A rs141029330 71298582 + 71298562 71298602 41 TGGCTTTGGAAGAAAATATGCTGCTGTAAATTAGGAAAGGG TGGCTTTGGAAGAAAATATGCTGCAGTAAATTAGGAAAGGG < 41bp 0.54982940338446 0.791508368664618 0.0858382 0.051712632 prediction 0.483357930560316 Functional Gain - SDHAF4 ENSG00000154079 UTR3 Human protein_coding chr6:71298582 chr6:71298586 . . 0 25 hm5C_associated_SNPs_110717 0 0 1 14 71298565 71298587 mRNA hsa-miR-503 C6orf57 miRanda miRanda
8709 chr1 71513014 71513014 1 + T C UCEC 71513012 + 71512992 71513032 41 AGCAGGAAGGACTTCTTGCGCTTGCTCTCCCGGCGCCGGTA AGCAGGAAGGACTTCTTGCGCTCGCTCTCCCGGCGCCGGTA < 41bp 0.512096272944805 0.75377510291692 0.24599478 0.2734338 prediction 0.48335765994423 Functional Gain - PTGER3 ENSG00000050628 CDS Human protein_coding chr1:71513012 chr1:71513014 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_110718 0 0 0 1 71512995 71513018 mRNA hsa-miR-503 LOC100132618 miRanda miRanda
8710 chr6 50683047 50683047 1 + C T UCEC 50683046 + 50683026 50683066 41 GCACAGCCACCCGGCCGTCACCCCCGACGCCTACTCTCTGA GCACAGCCACCCGGCCGTCACTCCCGACGCCTACTCTCTGA < 41bp 0.481892057949934 0.74164710073875 0.10988781 0.2357881 prediction 0.4832942014775 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683046 chr6:50683047 synonymous SNV . 0 22 hm5C_associated_SNPs_110734 0 0 0 1 50683042 50683064 mRNA hsa-let-7i TFAP2D miRanda miRanda
8711 chr15 40568823 40568823 1 + C A rs2242119 40568822 + 40568802 40568842 41 CCTGTACAGCCCCTCCCCGCCCAGAACTGTGAATGGCCTGC CCTGTACAGCCCCTCCCCGCCAAGAACTGTGAATGGCCTGC < 41bp 0.48546204586231 0.741577899270051 0.19298342 0.5466327 prediction 0.483155798540102 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843 UTR3 Human protein_coding chr15:40568822 chr15:40568823 . . 0 22 hm5C_associated_SNPs_110756 0 0 0 2 40568814 40568834 mRNA hsa-miR-27a PAK6 miRanda miRanda
8712 chr15 40568823 40568823 1 + C A rs2242119 40568822 + 40568802 40568842 41 CCTGTACAGCCCCTCCCCGCCCAGAACTGTGAATGGCCTGC CCTGTACAGCCCCTCCCCGCCAAGAACTGTGAATGGCCTGC < 41bp 0.48546204586231 0.741577899270051 0.19298342 0.5466327 prediction 0.483155798540102 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843 UTR3 Human protein_coding chr15:40568822 chr15:40568823 . . 0 22 hm5C_associated_SNPs_110756 0 0 0 2 40568814 40568834 mRNA hsa-miR-27b PAK6 miRanda miRanda
8713 chr16 84497351 84497351 1 + C G rs201001291 84497350 + 84497330 84497370 41 GATGTGTAGTGGACCGCACTCCGCGGCACCTTCCCTAATCA GATGTGTAGTGGACCGCACTCGGCGGCACCTTCCCTAATCA < 41bp 0.615662022747002 0.857232791085185 0.6999376 0.9427675 prediction 0.483141536676365 Functional Gain - ATP2C2-AS1 ENSG00000261286 ncRNA_intronic Human antisense chr16:84497350 chr16:84497351 . . 0 22 hm5C_associated_SNPs_110758 0 0 0 2 84497339 84497362 mRNA hsa-miR-18a ATP2C2 miRanda miRanda
8714 chr16 84497351 84497351 1 + C G rs201001291 84497350 + 84497330 84497370 41 GATGTGTAGTGGACCGCACTCCGCGGCACCTTCCCTAATCA GATGTGTAGTGGACCGCACTCGGCGGCACCTTCCCTAATCA < 41bp 0.615662022747002 0.857232791085185 0.6999376 0.9427675 prediction 0.483141536676365 Functional Gain - ATP2C2-AS1 ENSG00000261286 ncRNA_intronic Human antisense chr16:84497350 chr16:84497351 . . 0 22 hm5C_associated_SNPs_110758 0 0 0 2 84497339 84497362 mRNA hsa-miR-18b ATP2C2 miRanda miRanda
8715 chr17 5833685 5833685 1 + C G rs116311150 5833681 + 5833661 5833701 41 GGTTGCTCCTGCCTGTCATTCAGGCTTTGGCTCAGACAGCA GGTTGCTCCTGCCTGTCATTCAGGGTTTGGCTCAGACAGCA < 41bp 0.588749374310762 0.830185138483621 0.8176981 0.9363171 prediction 0.482871528345718 Functional Gain - LOC339166 ENSG00000179314 intronic Human protein_coding chr17:5833681 chr17:5833685 . . 0 25 hm5C_associated_SNPs_110807 0 0 0 10 5833682 5833705 mRNA hsa-miR-302a LOC339166 miRanda miRanda
8716 chr17 5833685 5833685 1 + C G rs116311150 5833681 + 5833661 5833701 41 GGTTGCTCCTGCCTGTCATTCAGGCTTTGGCTCAGACAGCA GGTTGCTCCTGCCTGTCATTCAGGGTTTGGCTCAGACAGCA < 41bp 0.588749374310762 0.830185138483621 0.8176981 0.9363171 prediction 0.482871528345718 Functional Gain - LOC339166 ENSG00000179314 intronic Human protein_coding chr17:5833681 chr17:5833685 . . 0 25 hm5C_associated_SNPs_110807 0 0 0 10 5833682 5833705 mRNA hsa-miR-302b LOC339166 miRanda miRanda
8717 chr17 5833685 5833685 1 + C G rs116311150 5833681 + 5833661 5833701 41 GGTTGCTCCTGCCTGTCATTCAGGCTTTGGCTCAGACAGCA GGTTGCTCCTGCCTGTCATTCAGGGTTTGGCTCAGACAGCA < 41bp 0.588749374310762 0.830185138483621 0.8176981 0.9363171 prediction 0.482871528345718 Functional Gain - LOC339166 ENSG00000179314 intronic Human protein_coding chr17:5833681 chr17:5833685 . . 0 25 hm5C_associated_SNPs_110807 0 0 0 10 5833684 5833705 mRNA hsa-miR-302c LOC339166 miRanda miRanda
8718 chr17 5833685 5833685 1 + C G rs116311150 5833681 + 5833661 5833701 41 GGTTGCTCCTGCCTGTCATTCAGGCTTTGGCTCAGACAGCA GGTTGCTCCTGCCTGTCATTCAGGGTTTGGCTCAGACAGCA < 41bp 0.588749374310762 0.830185138483621 0.8176981 0.9363171 prediction 0.482871528345718 Functional Gain - LOC339166 ENSG00000179314 intronic Human protein_coding chr17:5833681 chr17:5833685 . . 0 25 hm5C_associated_SNPs_110807 0 0 0 10 5833682 5833705 mRNA hsa-miR-302d LOC339166 miRanda miRanda
8719 chr17 5833685 5833685 1 + C G rs116311150 5833681 + 5833661 5833701 41 GGTTGCTCCTGCCTGTCATTCAGGCTTTGGCTCAGACAGCA GGTTGCTCCTGCCTGTCATTCAGGGTTTGGCTCAGACAGCA < 41bp 0.588749374310762 0.830185138483621 0.8176981 0.9363171 prediction 0.482871528345718 Functional Gain - LOC339166 ENSG00000179314 intronic Human protein_coding chr17:5833681 chr17:5833685 . . 0 25 hm5C_associated_SNPs_110807 0 0 0 10 5833681 5833705 mRNA hsa-miR-373 LOC339166 miRanda miRanda
8720 chr17 5833685 5833685 1 + C G rs116311150 5833681 + 5833661 5833701 41 GGTTGCTCCTGCCTGTCATTCAGGCTTTGGCTCAGACAGCA GGTTGCTCCTGCCTGTCATTCAGGGTTTGGCTCAGACAGCA < 41bp 0.588749374310762 0.830185138483621 0.8176981 0.9363171 prediction 0.482871528345718 Functional Gain - LOC339166 ENSG00000179314 intronic Human protein_coding chr17:5833681 chr17:5833685 . . 0 25 hm5C_associated_SNPs_110807 0 0 0 10 5833685 5833705 mRNA hsa-miR-520e LOC339166 miRanda miRanda
8721 chr17 5833685 5833685 1 + C G rs116311150 5833681 + 5833661 5833701 41 GGTTGCTCCTGCCTGTCATTCAGGCTTTGGCTCAGACAGCA GGTTGCTCCTGCCTGTCATTCAGGGTTTGGCTCAGACAGCA < 41bp 0.588749374310762 0.830185138483621 0.8176981 0.9363171 prediction 0.482871528345718 Functional Gain - LOC339166 ENSG00000179314 intronic Human protein_coding chr17:5833681 chr17:5833685 . . 0 25 hm5C_associated_SNPs_110807 0 0 0 10 5833683 5833705 mRNA hsa-miR-520a-3p LOC339166 miRanda miRanda
8722 chr17 5833685 5833685 1 + C G rs116311150 5833681 + 5833661 5833701 41 GGTTGCTCCTGCCTGTCATTCAGGCTTTGGCTCAGACAGCA GGTTGCTCCTGCCTGTCATTCAGGGTTTGGCTCAGACAGCA < 41bp 0.588749374310762 0.830185138483621 0.8176981 0.9363171 prediction 0.482871528345718 Functional Gain - LOC339166 ENSG00000179314 intronic Human protein_coding chr17:5833681 chr17:5833685 . . 0 25 hm5C_associated_SNPs_110807 0 0 0 10 5833683 5833705 mRNA hsa-miR-520b LOC339166 miRanda miRanda
8723 chr17 5833685 5833685 1 + C G rs116311150 5833681 + 5833661 5833701 41 GGTTGCTCCTGCCTGTCATTCAGGCTTTGGCTCAGACAGCA GGTTGCTCCTGCCTGTCATTCAGGGTTTGGCTCAGACAGCA < 41bp 0.588749374310762 0.830185138483621 0.8176981 0.9363171 prediction 0.482871528345718 Functional Gain - LOC339166 ENSG00000179314 intronic Human protein_coding chr17:5833681 chr17:5833685 . . 0 25 hm5C_associated_SNPs_110807 0 0 0 10 5833682 5833705 mRNA hsa-miR-520c-3p LOC339166 miRanda miRanda
8724 chr17 5833685 5833685 1 + C G rs116311150 5833681 + 5833661 5833701 41 GGTTGCTCCTGCCTGTCATTCAGGCTTTGGCTCAGACAGCA GGTTGCTCCTGCCTGTCATTCAGGGTTTGGCTCAGACAGCA < 41bp 0.588749374310762 0.830185138483621 0.8176981 0.9363171 prediction 0.482871528345718 Functional Gain - LOC339166 ENSG00000179314 intronic Human protein_coding chr17:5833681 chr17:5833685 . . 0 25 hm5C_associated_SNPs_110807 0 0 0 10 5833683 5833705 mRNA hsa-miR-520d-3p LOC339166 miRanda miRanda
8725 chr12 3686075 3686075 1 + C T LUAD 3686074 + 3686054 3686094 41 GGCTTTGACATGACCTGCATCCGGGACGTGGCCATGAAGGA GGCTTTGACATGACCTGCATCTGGGACGTGGCCATGAAGGA < 41bp 0.491898947536874 0.741381208247896 0.47107682 0.20087957 prediction 0.482762416495793 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3686074 chr12:3686075 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_110827 0 0 0 1 3686072 3686094 mRNA hsa-miR-205 PRMT8 miRanda miRanda
8726 chr3 119222829 119222829 1 + C T UCEC 119222828 + 119222808 119222848 41 AACACTAGTCTGAATGTATACCGAAATAAAGATGCCTTAAG AACACTAGTCTGAATGTATACTGAAATAAAGATGCCTTAAG < 41bp 0.522165396423881 0.763495011208125 0.08807194 0.14323369 prediction 0.482659229568488 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119222828 chr3:119222829 stopgain 0.986 1 22 hm5C_associated_SNPs_110846 0 0 1 4 119222827 119222846 mRNA hsa-miR-124 C3orf1 miRanda miRanda
8727 chr3 119222829 119222829 1 + C T UCEC 119222828 + 119222808 119222848 41 AACACTAGTCTGAATGTATACCGAAATAAAGATGCCTTAAG AACACTAGTCTGAATGTATACTGAAATAAAGATGCCTTAAG < 41bp 0.522165396423881 0.763495011208125 0.08807194 0.14323369 prediction 0.482659229568488 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119222828 chr3:119222829 stopgain 0.986 1 22 hm5C_associated_SNPs_110846 0 0 1 4 119222829 119222853 mRNA hsa-miR-135a C3orf1 miRanda miRanda
8728 chr3 119222829 119222829 1 + C T UCEC 119222828 + 119222808 119222848 41 AACACTAGTCTGAATGTATACCGAAATAAAGATGCCTTAAG AACACTAGTCTGAATGTATACTGAAATAAAGATGCCTTAAG < 41bp 0.522165396423881 0.763495011208125 0.08807194 0.14323369 prediction 0.482659229568488 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119222828 chr3:119222829 stopgain 0.986 1 22 hm5C_associated_SNPs_110846 0 0 1 4 119222829 119222853 mRNA hsa-miR-135b C3orf1 miRanda miRanda
8729 chr3 119222829 119222829 1 + C T UCEC 119222828 + 119222808 119222848 41 AACACTAGTCTGAATGTATACCGAAATAAAGATGCCTTAAG AACACTAGTCTGAATGTATACTGAAATAAAGATGCCTTAAG < 41bp 0.522165396423881 0.763495011208125 0.08807194 0.14323369 prediction 0.482659229568488 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119222828 chr3:119222829 stopgain 0.986 1 22 hm5C_associated_SNPs_110846 0 0 1 4 119222826 119222846 mRNA hsa-miR-506 C3orf1 miRanda miRanda
8730 chr19 49842105 49842105 1 + C T rs200739819 49842104 + 49842084 49842124 41 TCCTAGATAAGGTGATCTTGCCCCAGCTCAGCAGGCTTGGA TCCTAGATAAGGTGATCTTGCTCCAGCTCAGCAGGCTTGGA < 41bp 0.556819995476555 0.798101841196381 0.06465298 0.30787802 prediction 0.482563691439652 Functional Gain - CD37 ENSG00000104894 CDS Human protein_coding chr19:49842104 chr19:49842105 nonsynonymous SNV 0.032 1 22 hm5C_associated_SNPs_110865 0 0 1 2 49842084 49842106 mRNA hsa-miR-31 CD37 miRanda miRanda
8731 chr19 49842105 49842105 1 + C T rs200739819 49842104 + 49842084 49842124 41 TCCTAGATAAGGTGATCTTGCCCCAGCTCAGCAGGCTTGGA TCCTAGATAAGGTGATCTTGCTCCAGCTCAGCAGGCTTGGA < 41bp 0.556819995476555 0.798101841196381 0.06465298 0.30787802 prediction 0.482563691439652 Functional Gain - CD37 ENSG00000104894 CDS Human protein_coding chr19:49842104 chr19:49842105 nonsynonymous SNV 0.032 1 22 hm5C_associated_SNPs_110865 0 0 1 2 49842098 49842119 mRNA hsa-miR-370 CD37 miRanda miRanda
8732 chr3 50103886 50103886 1 + C T LUSC 50103885 + 50103865 50103905 41 TGCTTTGCAGAAGGCAGTTTCCCAATAAAGAAGTTCTGATC TGCTTTGCAGAAGGCAGTTTCTCAATAAAGAAGTTCTGATC < 41bp 0.479391119596774 0.741195571074183 0.22381932 0.8710413 prediction 0.482391142148367 Functional Gain - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50103885 chr3:50103886 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_110890 0 0 1 4 50103883 50103903 mRNA hsa-miR-146a RBM6 miRanda miRanda
8733 chr3 50103886 50103886 1 + C T LUSC 50103885 + 50103865 50103905 41 TGCTTTGCAGAAGGCAGTTTCCCAATAAAGAAGTTCTGATC TGCTTTGCAGAAGGCAGTTTCTCAATAAAGAAGTTCTGATC < 41bp 0.479391119596774 0.741195571074183 0.22381932 0.8710413 prediction 0.482391142148367 Functional Gain - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50103885 chr3:50103886 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_110890 0 0 1 4 50103885 50103906 mRNA hsa-miR-361-5p RBM6 miRanda miRanda
8734 chr3 50103886 50103886 1 + C T LUSC 50103885 + 50103865 50103905 41 TGCTTTGCAGAAGGCAGTTTCCCAATAAAGAAGTTCTGATC TGCTTTGCAGAAGGCAGTTTCTCAATAAAGAAGTTCTGATC < 41bp 0.479391119596774 0.741195571074183 0.22381932 0.8710413 prediction 0.482391142148367 Functional Gain - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50103885 chr3:50103886 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_110890 0 0 1 4 50103885 50103906 mRNA hsa-miR-383 RBM6 miRanda miRanda
8735 chr3 50103886 50103886 1 + C T LUSC 50103885 + 50103865 50103905 41 TGCTTTGCAGAAGGCAGTTTCCCAATAAAGAAGTTCTGATC TGCTTTGCAGAAGGCAGTTTCTCAATAAAGAAGTTCTGATC < 41bp 0.479391119596774 0.741195571074183 0.22381932 0.8710413 prediction 0.482391142148367 Functional Gain - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50103885 chr3:50103886 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_110890 0 0 1 4 50103884 50103903 mRNA hsa-miR-146b-5p RBM6 miRanda miRanda
8736 chr16 66887770 66887770 1 + C G rs569104573 66887766 + 66887746 66887786 41 CCTGGGGCGGGCAGCTGACACTACCAGAGAGACTCAAGCAA CCTGGGGCGGGCAGCTGACACTACGAGAGAGACTCAAGCAA < 41bp 0.573752545428644 0.814741529622168 0.1350429 0.36421755 prediction 0.481977968387048 Functional Gain - CA7 ENSG00000168748 UTR3 Human protein_coding chr16:66887766 chr16:66887770 . . 0 25 hm5C_associated_SNPs_110962 0 0 0 2 66887767 66887789 mRNA hsa-miR-137 CA7 miRanda miRanda
8737 chr16 66887770 66887770 1 + C G rs569104573 66887766 + 66887746 66887786 41 CCTGGGGCGGGCAGCTGACACTACCAGAGAGACTCAAGCAA CCTGGGGCGGGCAGCTGACACTACGAGAGAGACTCAAGCAA < 41bp 0.573752545428644 0.814741529622168 0.1350429 0.36421755 prediction 0.481977968387048 Functional Gain - CA7 ENSG00000168748 UTR3 Human protein_coding chr16:66887766 chr16:66887770 . . 0 25 hm5C_associated_SNPs_110962 0 0 0 2 66887748 66887770 mRNA hsa-miR-142-3p CA7 miRanda miRanda
8738 chr2 66795850 66795850 1 + T C COAD 66795848 + 66795828 66795868 41 GGACAGCCCATGGGAGGTTTCGTAATGGACGGTCAGCAACA GGACAGCCCATGGGAGGTTTCGCAATGGACGGTCAGCAACA < 41bp 0.462620726911896 0.740864992621973 0.29518294 0.39342153 prediction 0.481729985243947 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66795848 chr2:66795850 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_110990 0 0 1 1 66795847 66795867 mRNA hsa-miR-758 MEIS1 miRanda miRanda
8739 chr10 12191690 12191690 1 + C T HNSC 12191689 + 12191669 12191709 41 TCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTATTC TCATTGAAGTTGGAGATACACTGAAAGATAGAGCTTTATTC < 41bp 0.50634834889585 0.746997110574344 0.03663847 0.09137064 prediction 0.481297523356988 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191689 chr10:12191690 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_111060 0 0 1 4 12191685 12191706 mRNA hsa-miR-320a SEC61A2 miRanda miRanda
8740 chr10 12191690 12191690 1 + C T HNSC 12191689 + 12191669 12191709 41 TCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTATTC TCATTGAAGTTGGAGATACACTGAAAGATAGAGCTTTATTC < 41bp 0.50634834889585 0.746997110574344 0.03663847 0.09137064 prediction 0.481297523356988 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191689 chr10:12191690 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_111060 0 0 1 4 12191685 12191706 mRNA hsa-miR-320b SEC61A2 miRanda miRanda
8741 chr10 12191690 12191690 1 + C T HNSC 12191689 + 12191669 12191709 41 TCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTATTC TCATTGAAGTTGGAGATACACTGAAAGATAGAGCTTTATTC < 41bp 0.50634834889585 0.746997110574344 0.03663847 0.09137064 prediction 0.481297523356988 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191689 chr10:12191690 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_111060 0 0 1 4 12191687 12191706 mRNA hsa-miR-320c SEC61A2 miRanda miRanda
8742 chr10 12191690 12191690 1 + C T HNSC 12191689 + 12191669 12191709 41 TCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTATTC TCATTGAAGTTGGAGATACACTGAAAGATAGAGCTTTATTC < 41bp 0.50634834889585 0.746997110574344 0.03663847 0.09137064 prediction 0.481297523356988 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191689 chr10:12191690 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_111060 0 0 1 4 12191688 12191706 mRNA hsa-miR-320d SEC61A2 miRanda miRanda
8743 chr13 52234780 52234780 1 + C A rs201069156 52234776 + 52234756 52234796 41 AGACAGTGGACAGTATTGGCCAAGCGTATACCATGCAATGC AGACAGTGGACAGTATTGGCCAAGAGTATACCATGCAATGC < 41bp 0.332444172324533 0.740582826105218 0.2037692 0.14413562 prediction 0.481165652210436 Functional Gain - WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52234776 chr13:52234780 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_111085 0 0 1 3 52234779 52234798 mRNA hsa-miR-33a WDFY2 miRanda miRanda
8744 chr13 52234780 52234780 1 + C A rs201069156 52234776 + 52234756 52234796 41 AGACAGTGGACAGTATTGGCCAAGCGTATACCATGCAATGC AGACAGTGGACAGTATTGGCCAAGAGTATACCATGCAATGC < 41bp 0.332444172324533 0.740582826105218 0.2037692 0.14413562 prediction 0.481165652210436 Functional Gain - WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52234776 chr13:52234780 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_111085 0 0 1 3 52234780 52234799 mRNA hsa-miR-506 WDFY2 miRanda miRanda
8745 chr13 52234780 52234780 1 + C A rs201069156 52234776 + 52234756 52234796 41 AGACAGTGGACAGTATTGGCCAAGCGTATACCATGCAATGC AGACAGTGGACAGTATTGGCCAAGAGTATACCATGCAATGC < 41bp 0.332444172324533 0.740582826105218 0.2037692 0.14413562 prediction 0.481165652210436 Functional Gain - WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52234776 chr13:52234780 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_111085 0 0 1 3 52234778 52234798 mRNA hsa-miR-33b WDFY2 miRanda miRanda
8746 chr2 27258858 27258858 1 + C T UCEC 27258857 + 27258837 27258877 41 GGGGAGTCACTACATGGTTACCGCATCTGTATCCAGGCCAT GGGGAGTCACTACATGGTTACTGCATCTGTATCCAGGCCAT < 41bp 0.484609102332195 0.740531162013277 0.2988639 0.28498757 prediction 0.481062324026554 Functional Gain - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27258857 chr2:27258858 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_111102 0 0 1 1 27258846 27258870 mRNA hsa-miR-383 TMEM214 miRanda miRanda
8747 chr1 169818687 169818687 1 + C A LIHC 169818683 + 169818663 169818703 41 CCTGTATGTTTGCCTTACTGCTAGCTGACAGGAGTTGGCTG CCTGTATGTTTGCCTTACTGCTAGATGACAGGAGTTGGCTG < 41bp 0.339659940778245 0.740517136455635 0.20137876 0.28656572 prediction 0.481034272911271 Functional Gain - C1orf112 ENSG00000000460 CDS Human protein_coding chr1:169818683 chr1:169818687 nonsynonymous SNV 0.137 0 25 hm5C_associated_SNPs_111107 0 0 1 1 169818684 169818706 mRNA hsa-miR-424 C1orf112 miRanda miRanda
8748 chr3 38317515 38317515 1 + C T rs201547069 38317514 + 38317494 38317534 41 TTCATGATGCAGAGGTTTGGCCGCAAGTGGAGCCAGTTGGG TTCATGATGCAGAGGTTTGGCTGCAAGTGGAGCCAGTTGGG < 41bp 0.531992792639968 0.772496005907056 0.2084313 0.25530344 prediction 0.481006426534175 Functional Gain - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38317514 chr3:38317515 nonsynonymous SNV 0.548 5 22 hm5C_associated_SNPs_111113 0 0 0 1 38317508 38317530 mRNA hsa-miR-149 SLC22A13 miRanda miRanda
8749 chr2 239308407 239308407 1 + C G rs115951410 239308406 + 239308386 239308426 41 CCTTTGCATGGGTGTGCATACCGAGAGACAGGCAGCTTAGG CCTTTGCATGGGTGTGCATACGGAGAGACAGGCAGCTTAGG < 41bp 0.44208503757834 0.740458060935074 0.5455288 0.73245555 prediction 0.480916121870149 Functional Gain - TRAF3IP1 ENSG00000204104 UTR3 Human protein_coding chr2:239308406 chr2:239308407 . . 0 22 hm5C_associated_SNPs_111130 0 0 1 1 239308402 239308423 mRNA hsa-miR-22 TRAF3IP1 miRanda miRanda
8750 chr10 1043164 1043164 1 + C T SKCM 1043163 + 1043143 1043183 41 CCTAGTGCGTCAGCATTTATCCCGTTTGCCAACCATTGATC CCTAGTGCGTCAGCATTTATCTCGTTTGCCAACCATTGATC < 41bp 0.537952213616274 0.778322575717175 0.3308056 0.2562319 prediction 0.480740724201803 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1043163 chr10:1043164 synonymous SNV . 0 22 hm5C_associated_SNPs_111169 0 0 1 1 1043151 1043175 mRNA hsa-miR-182 GTPBP4 miRanda miRanda
8751 chr2 168115750 168115750 1 + T A BLCA 168115746 + 168115726 168115766 41 TGCCCGCAATAATGAAAACACAGGTTTTGATGCTCTGAGCC TGCCCGCAATAATGAAAACACAGGATTTGATGCTCTGAGCC < 41bp 0.565757249226486 0.805969583546605 0.17410678 0.29425052 prediction 0.480424668640237 Functional Gain - XIRP2 ENSG00000163092 CDS Human protein_coding chr2:168115746 chr2:168115750 synonymous SNV . 0 25 hm5C_associated_SNPs_111217 0 0 0 1 168115746 168115767 mRNA hsa-miR-24 XIRP2 miRanda miRanda
8752 chr6 26468289 26468289 1 + C A COAD 26468288 + 26468268 26468308 41 GGGGAGAGCGTGCCTGACAACCCAGAGAGATTCGACAGTCA GGGGAGAGCGTGCCTGACAACACAGAGAGATTCGACAGTCA < 41bp 0.535233475206161 0.775236162544456 0.3002362 0.24320725 prediction 0.480005374676589 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26468288 chr6:26468289 nonsynonymous SNV 0.944 3 22 hm5C_associated_SNPs_111289 0 0 0 3 26468275 26468295 mRNA hsa-miR-330-5p BTN2A1 miRanda miRanda
8753 chr6 26468289 26468289 1 + C A COAD 26468288 + 26468268 26468308 41 GGGGAGAGCGTGCCTGACAACCCAGAGAGATTCGACAGTCA GGGGAGAGCGTGCCTGACAACACAGAGAGATTCGACAGTCA < 41bp 0.535233475206161 0.775236162544456 0.3002362 0.24320725 prediction 0.480005374676589 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26468288 chr6:26468289 nonsynonymous SNV 0.944 3 22 hm5C_associated_SNPs_111289 0 0 0 3 26468276 26468295 mRNA hsa-miR-326 BTN2A1 miRanda miRanda
8754 chr6 26468289 26468289 1 + C A COAD 26468288 + 26468268 26468308 41 GGGGAGAGCGTGCCTGACAACCCAGAGAGATTCGACAGTCA GGGGAGAGCGTGCCTGACAACACAGAGAGATTCGACAGTCA < 41bp 0.535233475206161 0.775236162544456 0.3002362 0.24320725 prediction 0.480005374676589 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26468288 chr6:26468289 nonsynonymous SNV 0.944 3 22 hm5C_associated_SNPs_111289 0 0 0 3 26468280 26468300 mRNA hsa-miR-216b BTN2A1 miRanda miRanda
8755 chr16 68732333 68732333 1 + C G rs201353351 68732329 + 68732309 68732349 41 CTGCCTGCAGGGCTGGGGACCAAACGTCAGGCCACAGAGCA CTGCCTGCAGGGCTGGGGACCAAAGGTCAGGCCACAGAGCA < 41bp 0.438558927419906 0.739962618705232 0.13438144 0.3277958 prediction 0.479925237410464 Functional Gain - CDH3 ENSG00000062038 UTR3 Human protein_coding chr16:68732329 chr16:68732333 . . 0 25 hm5C_associated_SNPs_111306 0 0 0 1 68732326 68732348 mRNA hsa-miR-330-5p CDH3 miRanda miRanda
8756 chr8 42176801 42176801 1 + C T UCEC 42176800 + 42176780 42176820 41 CCCTGCAGGATGAATCTCCTCCGAAACAACAGCTGCCTCTC CCCTGCAGGATGAATCTCCTCTGAAACAACAGCTGCCTCTC < 41bp 0.529314127040448 0.769211355877504 0.47629964 0.30720806 prediction 0.479794457674111 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42176800 chr8:42176801 stopgain 1.000 1 22 hm5C_associated_SNPs_111332 0 0 1 1 42176790 42176817 mRNA hsa-miR-34c-5p IKBKB miRanda miRanda
8757 chr6 44151889 44151889 1 + C A rs117608105 44151888 + 44151868 44151908 41 CTTTCTCTTTTTTCCCCAACCCGGCTTCTGATGGCTGGCTT CTTTCTCTTTTTTCCCCAACCAGGCTTCTGATGGCTGGCTT < 41bp 0.492918325407066 0.739883322484463 0.26756036 0.6282761 prediction 0.479766644968925 Functional Gain - CAPN11 ENSG00000137225 UTR3 Human protein_coding chr6:44151888 chr6:44151889 . . 0 22 hm5C_associated_SNPs_111337 0 0 0 1 44151884 44151906 mRNA hsa-miR-338-3p CAPN11 miRanda miRanda
8758 chr16 55361589 55361589 1 + C T CESC 55361588 + 55361568 55361608 41 AAGGCCTGGCTCAACGAGCACCGCAAAAACCCCTACCCCAC AAGGCCTGGCTCAACGAGCACTGCAAAAACCCCTACCCCAC < 41bp 0.566296192817008 0.805970605028361 0.4021262 0.4436175 prediction 0.479348824422705 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55361588 chr16:55361589 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_111405 0 0 0 1 55361576 55361597 mRNA hsa-miR-129-5p IRX6 miRanda miRanda
8759 chr8 80549096 80549096 1 + C T UCEC 80549095 + 80549075 80549115 41 CTGATCTGCTCTTGCTTTTACCCGGAACCTCGCAACATCAA CTGATCTGCTCTTGCTTTTACTCGGAACCTCGCAACATCAA < 41bp 0.488088764038031 0.739674069161032 0.19372791 0.084194064 prediction 0.479348138322063 Functional Gain - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80549095 chr8:80549096 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_111406 0 0 0 1 80549092 80549111 mRNA hsa-miR-450a STMN2 miRanda miRanda
8760 chr3 180328027 180328027 1 + C G rs34873940 180328023 + 180328003 180328043 41 ACCAGGTTCTGTGAGGCATTCTACCTCACCAGCAAGCTCAG ACCAGGTTCTGTGAGGCATTCTACGTCACCAGCAAGCTCAG < 41bp 0.529115063538574 0.768597974189542 0.063040316 0.07467285 prediction 0.478965821301936 Functional Gain - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180328023 chr3:180328027 synonymous SNV . 0 25 hm5C_associated_SNPs_111482 0 0 0 10 180328009 180328030 mRNA hsa-let-7a TTC14 miRanda miRanda
8761 chr3 180328027 180328027 1 + C G rs34873940 180328023 + 180328003 180328043 41 ACCAGGTTCTGTGAGGCATTCTACCTCACCAGCAAGCTCAG ACCAGGTTCTGTGAGGCATTCTACGTCACCAGCAAGCTCAG < 41bp 0.529115063538574 0.768597974189542 0.063040316 0.07467285 prediction 0.478965821301936 Functional Gain - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180328023 chr3:180328027 synonymous SNV . 0 25 hm5C_associated_SNPs_111482 0 0 0 10 180328009 180328030 mRNA hsa-let-7b TTC14 miRanda miRanda
8762 chr3 180328027 180328027 1 + C G rs34873940 180328023 + 180328003 180328043 41 ACCAGGTTCTGTGAGGCATTCTACCTCACCAGCAAGCTCAG ACCAGGTTCTGTGAGGCATTCTACGTCACCAGCAAGCTCAG < 41bp 0.529115063538574 0.768597974189542 0.063040316 0.07467285 prediction 0.478965821301936 Functional Gain - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180328023 chr3:180328027 synonymous SNV . 0 25 hm5C_associated_SNPs_111482 0 0 0 10 180328009 180328030 mRNA hsa-let-7c TTC14 miRanda miRanda
8763 chr3 180328027 180328027 1 + C G rs34873940 180328023 + 180328003 180328043 41 ACCAGGTTCTGTGAGGCATTCTACCTCACCAGCAAGCTCAG ACCAGGTTCTGTGAGGCATTCTACGTCACCAGCAAGCTCAG < 41bp 0.529115063538574 0.768597974189542 0.063040316 0.07467285 prediction 0.478965821301936 Functional Gain - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180328023 chr3:180328027 synonymous SNV . 0 25 hm5C_associated_SNPs_111482 0 0 0 10 180328009 180328030 mRNA hsa-let-7d TTC14 miRanda miRanda
8764 chr3 180328027 180328027 1 + C G rs34873940 180328023 + 180328003 180328043 41 ACCAGGTTCTGTGAGGCATTCTACCTCACCAGCAAGCTCAG ACCAGGTTCTGTGAGGCATTCTACGTCACCAGCAAGCTCAG < 41bp 0.529115063538574 0.768597974189542 0.063040316 0.07467285 prediction 0.478965821301936 Functional Gain - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180328023 chr3:180328027 synonymous SNV . 0 25 hm5C_associated_SNPs_111482 0 0 0 10 180328009 180328030 mRNA hsa-let-7e TTC14 miRanda miRanda
8765 chr3 180328027 180328027 1 + C G rs34873940 180328023 + 180328003 180328043 41 ACCAGGTTCTGTGAGGCATTCTACCTCACCAGCAAGCTCAG ACCAGGTTCTGTGAGGCATTCTACGTCACCAGCAAGCTCAG < 41bp 0.529115063538574 0.768597974189542 0.063040316 0.07467285 prediction 0.478965821301936 Functional Gain - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180328023 chr3:180328027 synonymous SNV . 0 25 hm5C_associated_SNPs_111482 0 0 0 10 180328009 180328030 mRNA hsa-let-7f TTC14 miRanda miRanda
8766 chr3 180328027 180328027 1 + C G rs34873940 180328023 + 180328003 180328043 41 ACCAGGTTCTGTGAGGCATTCTACCTCACCAGCAAGCTCAG ACCAGGTTCTGTGAGGCATTCTACGTCACCAGCAAGCTCAG < 41bp 0.529115063538574 0.768597974189542 0.063040316 0.07467285 prediction 0.478965821301936 Functional Gain - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180328023 chr3:180328027 synonymous SNV . 0 25 hm5C_associated_SNPs_111482 0 0 0 10 180328009 180328030 mRNA hsa-miR-98 TTC14 miRanda miRanda
8767 chr3 180328027 180328027 1 + C G rs34873940 180328023 + 180328003 180328043 41 ACCAGGTTCTGTGAGGCATTCTACCTCACCAGCAAGCTCAG ACCAGGTTCTGTGAGGCATTCTACGTCACCAGCAAGCTCAG < 41bp 0.529115063538574 0.768597974189542 0.063040316 0.07467285 prediction 0.478965821301936 Functional Gain - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180328023 chr3:180328027 synonymous SNV . 0 25 hm5C_associated_SNPs_111482 0 0 0 10 180328009 180328030 mRNA hsa-let-7g TTC14 miRanda miRanda
8768 chr3 180328027 180328027 1 + C G rs34873940 180328023 + 180328003 180328043 41 ACCAGGTTCTGTGAGGCATTCTACCTCACCAGCAAGCTCAG ACCAGGTTCTGTGAGGCATTCTACGTCACCAGCAAGCTCAG < 41bp 0.529115063538574 0.768597974189542 0.063040316 0.07467285 prediction 0.478965821301936 Functional Gain - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180328023 chr3:180328027 synonymous SNV . 0 25 hm5C_associated_SNPs_111482 0 0 0 10 180328008 180328030 mRNA hsa-let-7i TTC14 miRanda miRanda
8769 chr3 180328027 180328027 1 + C G rs34873940 180328023 + 180328003 180328043 41 ACCAGGTTCTGTGAGGCATTCTACCTCACCAGCAAGCTCAG ACCAGGTTCTGTGAGGCATTCTACGTCACCAGCAAGCTCAG < 41bp 0.529115063538574 0.768597974189542 0.063040316 0.07467285 prediction 0.478965821301936 Functional Gain - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180328023 chr3:180328027 synonymous SNV . 0 25 hm5C_associated_SNPs_111482 0 0 0 10 180328013 180328036 mRNA hsa-miR-138 TTC14 miRanda miRanda
8770 chr17 63221441 63221441 1 + C T COAD 63221440 + 63221420 63221460 41 CCCAGGGCCCCTCCTAAGGCCCGCATGGCTCTGTCCTTCAG CCCAGGGCCCCTCCTAAGGCCTGCATGGCTCTGTCCTTCAG < 41bp 0.552119060442758 0.791478278859582 0.009544462 0.031455815 prediction 0.478718436833648 Functional Gain - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63221440 chr17:63221441 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_111521 0 0 0 1 63221441 63221465 mRNA hsa-miR-370 RGS9 miRanda miRanda
8771 chr17 63223609 63223609 1 + C A rs112466110 63223605 + 63223585 63223625 41 GGTATGGGCCACAGGACACACTTGCTCGAGAACCAAAGTGC GGTATGGGCCACAGGACACACTTGATCGAGAACCAAAGTGC < 41bp 0.352464854824704 0.73932158471974 0.0626291 0.0726541 prediction 0.478643169439479 Functional Gain - RGS9 ENSG00000108370 UTR3 Human protein_coding chr17:63223605 chr17:63223609 . . 0 25 hm5C_associated_SNPs_111532 0 0 0 1 63223601 63223623 mRNA hsa-miR-9 RGS9 miRanda miRanda
8772 chr16 29708699 29708699 1 + C A LIHC 29708698 + 29708678 29708718 41 TTTCTCCCTCAAGCTGTTTGCCAAAGAGGTGGCTCCAGTGC TTTCTCCCTCAAGCTGTTTGCAAAAGAGGTGGCTCCAGTGC < 41bp 0.551622770937594 0.790920649288492 0.13835025 0.23224032 prediction 0.478595756701796 Functional Gain - QPRT ENSG00000103485 CDS Human protein_coding chr16:29708698 chr16:29708699 synonymous SNV . 0 22 hm5C_associated_SNPs_111546 0 0 1 1 29708671 29708702 mRNA hsa-miR-182 QPRT miRanda miRanda
8773 chr10 131959215 131959215 1 + C A STAD 131959211 + 131959191 131959231 41 CTTGAAGAAATTGACTCATGCTGCCCCCTGCATGCTGTTTA CTTGAAGAAATTGACTCATGCTGCACCCTGCATGCTGTTTA < 41bp 0.316573950295255 0.739159527898028 0.018506676 0.017433286 prediction 0.478319055796056 Functional Gain - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131959211 chr10:131959215 synonymous SNV . 0 25 hm5C_associated_SNPs_111611 0 0 0 2 131959193 131959215 mRNA hsa-miR-103 GLRX3 miRanda miRanda
8774 chr10 131959215 131959215 1 + C A STAD 131959211 + 131959191 131959231 41 CTTGAAGAAATTGACTCATGCTGCCCCCTGCATGCTGTTTA CTTGAAGAAATTGACTCATGCTGCACCCTGCATGCTGTTTA < 41bp 0.316573950295255 0.739159527898028 0.018506676 0.017433286 prediction 0.478319055796056 Functional Gain - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131959211 chr10:131959215 synonymous SNV . 0 25 hm5C_associated_SNPs_111611 0 0 0 2 131959193 131959215 mRNA hsa-miR-107 GLRX3 miRanda miRanda
8775 chr16 20477011 20477011 1 + C A LUSC 20477010 + 20476990 20477030 41 CAGTGGTGCTGCCCCGAGTGCCTGAGTGGTGGCTGGTGATC CAGTGGTGCTGCCCCGAGTGCATGAGTGGTGGCTGGTGATC < 41bp 0.553999023679216 0.793147525820894 0.16351205 0.25535786 prediction 0.478297004283356 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20477010 chr16:20477011 nonsynonymous SNV 0.886 4 22 hm5C_associated_SNPs_111613 0 0 0 1 20477000 20477024 mRNA hsa-miR-29c ACSM2A miRanda miRanda
8776 chr17 40705294 40705294 1 + C T UCEC 40705293 + 40705273 40705313 41 CGGGAACGCGTGACTGAGGGCCGCGTGGACGTGCTGGGTGA CGGGAACGCGTGACTGAGGGCTGCGTGGACGTGCTGGGTGA < 41bp 0.512309888897321 0.751200913121384 0.44134793 0.36841422 prediction 0.477782048448127 Functional Gain - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40705293 chr17:40705294 nonsynonymous SNV 0.026 5 22 hm5C_associated_SNPs_111690 0 0 0 2 40705294 40705309 mRNA hsa-miR-362-3p HSD17B1 miRanda miRanda
8777 chr17 40705294 40705294 1 + C T UCEC 40705293 + 40705273 40705313 41 CGGGAACGCGTGACTGAGGGCCGCGTGGACGTGCTGGGTGA CGGGAACGCGTGACTGAGGGCTGCGTGGACGTGCTGGGTGA < 41bp 0.512309888897321 0.751200913121384 0.44134793 0.36841422 prediction 0.477782048448127 Functional Gain - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40705293 chr17:40705294 nonsynonymous SNV 0.026 5 22 hm5C_associated_SNPs_111690 0 0 0 2 40705294 40705309 mRNA hsa-miR-329 HSD17B1 miRanda miRanda
8778 chr2 133402852 133402852 1 - G T UCEC 133402853 - 133402833 133402873 41 CCGAAACTGCTGCGAGGACACCGTGTACAGGAGCGGGTTGA CCGAAACTGCTGCGAGGACACAGTGTACAGGAGCGGGTTGA < 41bp 0.544898482876792 0.783765963086126 0.34417915 0.4874631 prediction 0.477734960418668 Functional Gain - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133402853 chr2:133402852 synonymous SNV . 0 22 hm5C_associated_SNPs_111699 0 0 0 1 133402842 133402863 mRNA hsa-miR-486-5p LYPD1 miRanda miRanda
8779 chr3 186505357 186505357 1 + T A OV 186505353 + 186505333 186505373 41 GGTCAGGGTCAAGTCGTGTTCTGATCACTACTGACTTGTTG GGTCAGGGTCAAGTCGTGTTCTGAACACTACTGACTTGTTG < 41bp 0.426824162479651 0.738850271245941 0.124138 0.14048806 prediction 0.477700542491882 Functional Gain - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186505353 chr3:186505357 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_111704 0 0 1 1 186505339 186505359 mRNA hsa-miR-383 EIF4A2 miRanda miRanda
8780 chr2 71299785 71299785 1 + A G KIRC 71299782 + 71299762 71299802 41 TTTCCCCAGGTGGAGTTGTGCTCATATCTGGAACAGGCTCC TTTCCCCAGGTGGAGTTGTGCTCGTATCTGGAACAGGCTCC < 41bp 0.501043924863613 0.73977717503045 0.23053357 0.29613137 prediction 0.477466500333674 Functional Gain - NAGK ENSG00000124357 CDS Human protein_coding chr2:71299782 chr2:71299785 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_111748 0 0 1 1 71299771 71299787 mRNA hsa-miR-425 NAGK miRanda miRanda
8781 chr1 48699342 48699342 1 + T C UCEC 48699340 + 48699320 48699360 41 TCCACAGACGAGGTGGGCTGCGTGGACCCTGATGTCTGCCA TCCACAGACGAGGTGGGCTGCGCGGACCCTGATGTCTGCCA < 41bp 0.548591771233885 0.787320219286122 0.42346564 0.5512727 prediction 0.477456896104474 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48699340 chr1:48699342 nonsynonymous SNV 0.833 4 23 hm5C_associated_SNPs_111749 0 0 1 1 48699338 48699362 mRNA hsa-miR-182 SLC5A9 miRanda miRanda
8782 chr2 66798590 66798590 1 + T G UCEC 66798588 + 66798568 66798608 41 CCCTGGAATGCCAATGTCAGCATCAAGCCCCACAGTTCTTA CCCTGGAATGCCAATGTCAGCAGCAAGCCCCACAGTTCTTA < 41bp 0.593316238800635 0.831978417049185 0.04678312 0.29193246 prediction 0.477324356497101 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66798588 chr2:66798590 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_111767 0 0 0 1 66798580 66798601 mRNA hsa-miR-491-5p MEIS1 miRanda miRanda
8783 chr22 44564682 44564682 1 + C G rs566335744 44564681 + 44564661 44564701 41 CAAGCTGTGTTGACTGTCATCCCCACCCCACCCCTACCTCA CAAGCTGTGTTGACTGTCATCGCCACCCCACCCCTACCTCA < 41bp 0.61535416477207 0.853882106404335 0.15910143 0.68559194 prediction 0.477055883264531 Functional Gain - PARVB ENSG00000188677 UTR3 Human protein_coding chr22:44564681 chr22:44564682 . . 0 22 hm5C_associated_SNPs_111814 0 0 1 1 44564666 44564687 mRNA hsa-miR-491-5p PARVB miRanda miRanda
8784 chr2 27282176 27282176 1 + C T SKCM 27282175 + 27282155 27282195 41 TCTCCACAGATGAAGAATTCCCCCAGCTTTCCTTTTCATGG TCTCCACAGATGAAGAATTCCTCCAGCTTTCCTTTTCATGG < 41bp 0.56881415476412 0.807323247772491 0.03717208 0.9239821 prediction 0.477018186016743 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27282175 chr2:27282176 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111821 0 0 1 4 27282164 27282185 mRNA hsa-miR-320a AGBL5 miRanda miRanda
8785 chr2 27282176 27282176 1 + C T SKCM 27282175 + 27282155 27282195 41 TCTCCACAGATGAAGAATTCCCCCAGCTTTCCTTTTCATGG TCTCCACAGATGAAGAATTCCTCCAGCTTTCCTTTTCATGG < 41bp 0.56881415476412 0.807323247772491 0.03717208 0.9239821 prediction 0.477018186016743 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27282175 chr2:27282176 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111821 0 0 1 4 27282164 27282185 mRNA hsa-miR-320b AGBL5 miRanda miRanda
8786 chr2 27282176 27282176 1 + C T SKCM 27282175 + 27282155 27282195 41 TCTCCACAGATGAAGAATTCCCCCAGCTTTCCTTTTCATGG TCTCCACAGATGAAGAATTCCTCCAGCTTTCCTTTTCATGG < 41bp 0.56881415476412 0.807323247772491 0.03717208 0.9239821 prediction 0.477018186016743 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27282175 chr2:27282176 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111821 0 0 1 4 27282166 27282185 mRNA hsa-miR-320c AGBL5 miRanda miRanda
8787 chr2 27282176 27282176 1 + C T SKCM 27282175 + 27282155 27282195 41 TCTCCACAGATGAAGAATTCCCCCAGCTTTCCTTTTCATGG TCTCCACAGATGAAGAATTCCTCCAGCTTTCCTTTTCATGG < 41bp 0.56881415476412 0.807323247772491 0.03717208 0.9239821 prediction 0.477018186016743 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27282175 chr2:27282176 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_111821 0 0 1 4 27282167 27282185 mRNA hsa-miR-320d AGBL5 miRanda miRanda
8788 chr20 2845253 2845253 1 + C G COAD 2845252 + 2845232 2845272 41 TACAATCAGGATGACAATCACCAGGAATTGGGCAGCTTCCA TACAATCAGGATGACAATCACGAGGAATTGGGCAGCTTCCA < 41bp 0.417394630565421 0.738503680807413 0.41075593 0.8931821 prediction 0.477007361614827 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2845252 chr20:2845253 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_111823 0 0 0 1 2845247 2845269 mRNA hsa-miR-22 VPS16 miRanda miRanda
8789 chr19 36205651 36205651 1 + C A LUSC 36205650 + 36205630 36205670 41 CGTAGGGAGCCAGGAGTTCCCCGCCCACAGCCTGGTGCTAG CGTAGGGAGCCAGGAGTTCCCAGCCCACAGCCTGGTGCTAG < 41bp 0.559670279402424 0.798155039515011 0.15391356 0.4284343 prediction 0.476969520225174 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205650 chr19:36205651 synonymous SNV . 0 22 hm5C_associated_SNPs_111831 0 0 0 3 36205647 36205669 mRNA hsa-miR-29a ZBTB32 miRanda miRanda
8790 chr19 36205651 36205651 1 + C A LUSC 36205650 + 36205630 36205670 41 CGTAGGGAGCCAGGAGTTCCCCGCCCACAGCCTGGTGCTAG CGTAGGGAGCCAGGAGTTCCCAGCCCACAGCCTGGTGCTAG < 41bp 0.559670279402424 0.798155039515011 0.15391356 0.4284343 prediction 0.476969520225174 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205650 chr19:36205651 synonymous SNV . 0 22 hm5C_associated_SNPs_111831 0 0 0 3 36205647 36205669 mRNA hsa-miR-29b ZBTB32 miRanda miRanda
8791 chr19 36205651 36205651 1 + C A LUSC 36205650 + 36205630 36205670 41 CGTAGGGAGCCAGGAGTTCCCCGCCCACAGCCTGGTGCTAG CGTAGGGAGCCAGGAGTTCCCAGCCCACAGCCTGGTGCTAG < 41bp 0.559670279402424 0.798155039515011 0.15391356 0.4284343 prediction 0.476969520225174 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205650 chr19:36205651 synonymous SNV . 0 22 hm5C_associated_SNPs_111831 0 0 0 3 36205647 36205669 mRNA hsa-miR-29c ZBTB32 miRanda miRanda
8792 chr1 35223880 35223880 1 + C A rs148596094 35223876 + 35223856 35223896 41 GGCAGGCAAGAGAGAGGATTCAGACGCTCTGGGAGCCAGTT GGCAGGCAAGAGAGAGGATTCAGAAGCTCTGGGAGCCAGTT < 41bp 0.656368380040248 0.89477045946751 0.91815627 0.91941535 prediction 0.476804158854524 Functional Gain - GJB5 ENSG00000189280 UTR3 Human protein_coding chr1:35223876 chr1:35223880 . . 0 25 hm5C_associated_SNPs_111866 0 0 0 1 35223869 35223895 mRNA hsa-miR-149 GJB5 miRanda miRanda
8793 chr4 17625374 17625374 1 + C T LGG 17625373 + 17625353 17625393 41 CCTCAGGGCTCCTTGGCCTACCTGGAGCAGGCATCTGCCAA CCTCAGGGCTCCTTGGCCTACTTGGAGCAGGCATCTGCCAA < 41bp 0.498232479310036 0.738298998741981 0.36192644 0.37206036 prediction 0.476597997483963 Functional Gain - MED28 ENSG00000118579 CDS Human protein_coding chr4:17625373 chr4:17625374 synonymous SNV . 0 22 hm5C_associated_SNPs_111895 0 0 1 1 17625370 17625392 mRNA hsa-miR-34a MED28 miRanda miRanda
8794 chr3 135801233 135801233 1 + C A OV 135801229 + 135801209 135801249 41 ACTGATCACGACCTCTACATCAGCCAGGCCGATCTGTCTCG ACTGATCACGACCTCTACATCAGCAAGGCCGATCTGTCTCG < 41bp 0.316249388040561 0.738093211338125 0.08294061 0.102811545 prediction 0.476186422676249 Functional Gain - PPP2R3A ENSG00000073711 CDS Human protein_coding chr3:135801229 chr3:135801233 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_111961 0 0 0 1 135801215 135801237 mRNA hsa-miR-370 PPP2R3A miRanda miRanda
8795 chr3 3170829 3170829 1 + C T rs368274081 3170828 + 3170808 3170848 41 CACAATGAAGTTGCAGTCTCCCGAATTCCAGTCACTTTTCA CACAATGAAGTTGCAGTCTCCTGAATTCCAGTCACTTTTCA < 41bp 0.530769108457117 0.768812368705486 0.09446427 0.06270677 prediction 0.476086520496737 Functional Gain - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3170828 chr3:3170829 synonymous SNV . 0 22 hm5C_associated_SNPs_111984 1 0 1 3 3170821 3170846 mRNA hsa-miR-93 TRNT1 miRanda miRanda
8796 chr3 3170829 3170829 1 + C T rs368274081 3170828 + 3170808 3170848 41 CACAATGAAGTTGCAGTCTCCCGAATTCCAGTCACTTTTCA CACAATGAAGTTGCAGTCTCCTGAATTCCAGTCACTTTTCA < 41bp 0.530769108457117 0.768812368705486 0.09446427 0.06270677 prediction 0.476086520496737 Functional Gain - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3170828 chr3:3170829 synonymous SNV . 0 22 hm5C_associated_SNPs_111984 1 0 1 3 3170822 3170843 mRNA hsa-miR-134 TRNT1 miRanda miRanda
8797 chr3 3170829 3170829 1 + C T rs368274081 3170828 + 3170808 3170848 41 CACAATGAAGTTGCAGTCTCCCGAATTCCAGTCACTTTTCA CACAATGAAGTTGCAGTCTCCTGAATTCCAGTCACTTTTCA < 41bp 0.530769108457117 0.768812368705486 0.09446427 0.06270677 prediction 0.476086520496737 Functional Gain - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3170828 chr3:3170829 synonymous SNV . 0 22 hm5C_associated_SNPs_111984 1 0 1 3 3170824 3170845 mRNA hsa-miR-372 TRNT1 miRanda miRanda
8798 chr8 39785516 39785516 1 + C T SKCM 39785515 + 39785495 39785535 41 TGTGTGAAAGCTCTGGTCTCCCTGAGGAGCTACCATCTGCA TGTGTGAAAGCTCTGGTCTCCTTGAGGAGCTACCATCTGCA < 41bp 0.511376252347502 0.749369146687589 0.19652095 0.14382818 prediction 0.475985788680174 Functional Gain - IDO1 ENSG00000131203 CDS Human protein_coding chr8:39785515 chr8:39785516 synonymous SNV . 0 22 hm5C_associated_SNPs_112008 0 0 0 1 39785514 39785538 mRNA hsa-miR-450a IDO1 miRanda miRanda
8799 chr5 96364252 96364252 1 + C A rs199927034 96364248 + 96364228 96364268 41 GTGGCTGTAGCATGCACAACCGCACCTCATTTTGTTGCCCA GTGGCTGTAGCATGCACAACCGCAACTCATTTTGTTGCCCA < 41bp 0.344884233604043 0.737980286075091 0.05864644 0.35439658 prediction 0.475960572150183 Functional Gain - LNPEP ENSG00000113441 UTR3 Human protein_coding chr5:96364248 chr5:96364252 . . 0 25 hm5C_associated_SNPs_112014 0 0 1 2 96364238 96364256 mRNA hsa-miR-18a LNPEP miRanda miRanda
8800 chr5 96364252 96364252 1 + C A rs199927034 96364248 + 96364228 96364268 41 GTGGCTGTAGCATGCACAACCGCACCTCATTTTGTTGCCCA GTGGCTGTAGCATGCACAACCGCAACTCATTTTGTTGCCCA < 41bp 0.344884233604043 0.737980286075091 0.05864644 0.35439658 prediction 0.475960572150183 Functional Gain - LNPEP ENSG00000113441 UTR3 Human protein_coding chr5:96364248 chr5:96364252 . . 0 25 hm5C_associated_SNPs_112014 0 0 1 2 96364238 96364256 mRNA hsa-miR-18b LNPEP miRanda miRanda
8801 chr10 95552607 95552607 1 + C G OV 95552606 + 95552586 95552626 41 ACATCTACTGCGAAGGCCCCCCAGAATACAAGAAGCGCAAA ACATCTACTGCGAAGGCCCCCGAGAATACAAGAAGCGCAAA < 41bp 0.632269814559714 0.870232468865786 0.09815085 0.2869904 prediction 0.475925308612144 Functional Gain - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95552606 chr10:95552607 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_112020 0 0 0 1 95552606 95552627 mRNA hsa-miR-450a LGI1 miRanda miRanda
8802 chr17 80445995 80445995 1 + C A LUSC 80445994 + 80445974 80446014 41 CTGCATACCACGTACCAGAGCCAGGAGCGTGGCACACACAG CTGCATACCACGTACCAGAGCAAGGAGCGTGGCACACACAG < 41bp 0.498286665121487 0.737943016124913 0.9192784 0.8989279 prediction 0.475886032249826 Functional Gain - NARF ENSG00000141562 CDS Human protein_coding chr17:80445994 chr17:80445995 nonsynonymous SNV 0.036 0 22 hm5C_associated_SNPs_112028 0 0 1 1 80445977 80445998 mRNA hsa-miR-149 NARF miRanda miRanda
8803 chr4 187179350 187179350 1 + T A rs143866894 187179346 + 187179326 187179366 41 AGAGCAGTGATGGAAAAGCTCAGATGCAGTCACCAGCATGA AGAGCAGTGATGGAAAAGCTCAGAAGCAGTCACCAGCATGA < 41bp 0.61797409492606 0.855843548823005 0.24055007 0.3628121 prediction 0.47573890779389 Functional Gain - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187179346 chr4:187179350 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_112054 0 0 0 4 187179335 187179356 mRNA hsa-miR-217 KLKB1 miRanda miRanda
8804 chr4 187179350 187179350 1 + T A rs143866894 187179346 + 187179326 187179366 41 AGAGCAGTGATGGAAAAGCTCAGATGCAGTCACCAGCATGA AGAGCAGTGATGGAAAAGCTCAGAAGCAGTCACCAGCATGA < 41bp 0.61797409492606 0.855843548823005 0.24055007 0.3628121 prediction 0.47573890779389 Functional Gain - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187179346 chr4:187179350 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_112054 0 0 0 4 187179342 187179363 mRNA hsa-miR-138 KLKB1 miRanda miRanda
8805 chr4 187179350 187179350 1 + T A rs143866894 187179346 + 187179326 187179366 41 AGAGCAGTGATGGAAAAGCTCAGATGCAGTCACCAGCATGA AGAGCAGTGATGGAAAAGCTCAGAAGCAGTCACCAGCATGA < 41bp 0.61797409492606 0.855843548823005 0.24055007 0.3628121 prediction 0.47573890779389 Functional Gain - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187179346 chr4:187179350 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_112054 0 0 0 4 187179336 187179359 mRNA hsa-miR-134 KLKB1 miRanda miRanda
8806 chr4 187179350 187179350 1 + T A rs143866894 187179346 + 187179326 187179366 41 AGAGCAGTGATGGAAAAGCTCAGATGCAGTCACCAGCATGA AGAGCAGTGATGGAAAAGCTCAGAAGCAGTCACCAGCATGA < 41bp 0.61797409492606 0.855843548823005 0.24055007 0.3628121 prediction 0.47573890779389 Functional Gain - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187179346 chr4:187179350 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_112054 0 0 0 4 187179332 187179354 mRNA hsa-miR-33b KLKB1 miRanda miRanda
8807 chr3 119347670 119347670 1 + T C LUAD 119347668 + 119347648 119347688 41 TGGAAAAAAGACCGGACTACCATTATTGGGAAGTTCTGCAC TGGAAAAAAGACCGGACTACCACTATTGGGAAGTTCTGCAC < 41bp 0.582435303721776 0.820282459315752 0.16352409 0.15950093 prediction 0.475694311187952 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119347668 chr3:119347670 nonsynonymous SNV 0.035 2 23 hm5C_associated_SNPs_112064 0 0 0 1 119347669 119347693 mRNA hsa-miR-34c-5p PLA1A miRanda miRanda
8808 chr12 125591750 125591750 1 + C A SKCM 125591746 + 125591726 125591766 41 TCGAGCAGCTGCCCTTCAGCCACCCACTGTTCATCATGTTC TCGAGCAGCTGCCCTTCAGCCACCAACTGTTCATCATGTTC < 41bp 0.29828570374722 0.737768801904361 0.0406276 0.113385886 prediction 0.475537603808722 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125591746 chr12:125591750 nonsynonymous SNV 0.972 4 25 hm5C_associated_SNPs_112093 0 0 0 1 125591746 125591769 mRNA hsa-miR-146a AACS miRanda miRanda
8809 chr17 74465781 74465781 1 + T C rs141360557 74465779 + 74465759 74465799 41 CTGCACAGGTCTGGGGGCCACATAGCCCACCTGCATGTGCT CTGCACAGGTCTGGGGGCCACACAGCCCACCTGCATGTGCT < 41bp 0.499582756997299 0.737561300613145 0.24785161 0.22134963 prediction 0.47512260122629 Functional Gain - AANAT ENSG00000129673 CDS Human protein_coding chr17:74465779 chr17:74465781 nonsynonymous SNV 0.864 0 23 hm5C_associated_SNPs_112161 0 0 0 1 74465760 74465782 mRNA hsa-miR-455-5p AANAT miRanda miRanda
8810 chr14 69820946 69820946 1 + C A rs2296724 69820945 + 69820925 69820965 41 GGACCTTTGGGGCTGGGGAGCCGGGGCTGCGCCTGTTGAAT GGACCTTTGGGGCTGGGGAGCAGGGGCTGCGCCTGTTGAAT < 41bp 0.507906907063451 0.74538442771061 0.9444215 0.9449613 prediction 0.474955041294318 Functional Gain - GALNT16 ENSG00000100626 UTR3 Human protein_coding chr14:69820945 chr14:69820946 . . 0 22 hm5C_associated_SNPs_112200 0 0 0 4 69820945 69820968 mRNA hsa-miR-181a GALNTL1 miRanda miRanda
8811 chr14 69820946 69820946 1 + C A rs2296724 69820945 + 69820925 69820965 41 GGACCTTTGGGGCTGGGGAGCCGGGGCTGCGCCTGTTGAAT GGACCTTTGGGGCTGGGGAGCAGGGGCTGCGCCTGTTGAAT < 41bp 0.507906907063451 0.74538442771061 0.9444215 0.9449613 prediction 0.474955041294318 Functional Gain - GALNT16 ENSG00000100626 UTR3 Human protein_coding chr14:69820945 chr14:69820946 . . 0 22 hm5C_associated_SNPs_112200 0 0 0 4 69820946 69820968 mRNA hsa-miR-181c GALNTL1 miRanda miRanda
8812 chr14 69820946 69820946 1 + C A rs2296724 69820945 + 69820925 69820965 41 GGACCTTTGGGGCTGGGGAGCCGGGGCTGCGCCTGTTGAAT GGACCTTTGGGGCTGGGGAGCAGGGGCTGCGCCTGTTGAAT < 41bp 0.507906907063451 0.74538442771061 0.9444215 0.9449613 prediction 0.474955041294318 Functional Gain - GALNT16 ENSG00000100626 UTR3 Human protein_coding chr14:69820945 chr14:69820946 . . 0 22 hm5C_associated_SNPs_112200 0 0 0 4 69820946 69820968 mRNA hsa-miR-181d GALNTL1 miRanda miRanda
8813 chr14 69820946 69820946 1 + C A rs2296724 69820945 + 69820925 69820965 41 GGACCTTTGGGGCTGGGGAGCCGGGGCTGCGCCTGTTGAAT GGACCTTTGGGGCTGGGGAGCAGGGGCTGCGCCTGTTGAAT < 41bp 0.507906907063451 0.74538442771061 0.9444215 0.9449613 prediction 0.474955041294318 Functional Gain - GALNT16 ENSG00000100626 UTR3 Human protein_coding chr14:69820945 chr14:69820946 . . 0 22 hm5C_associated_SNPs_112200 0 0 0 4 69820942 69820964 mRNA hsa-miR-421 GALNTL1 miRanda miRanda
8814 chr15 66840798 66840798 1 + T G rs183222637 66840795 + 66840775 66840815 41 GGAGGAAGATCCTGAAGATTCTCTTATGAAGCTCCAAAATT GGAGGAAGATCCTGAAGATTCTCGTATGAAGCTCCAAAATT < 41bp 0.368053316200252 0.73737847638968 0.028272629 0.14290571 prediction 0.474756952779359 Functional Gain - LCTL;ZWILCH ENSG00000174442;ENSG00000188501 UTR3 Human other chr15:66840795 chr15:66840798 . . 0 24 hm5C_associated_SNPs_112237 0 0 1 1 66840787 66840808 mRNA hsa-miR-21 ZWILCH miRanda miRanda
8815 chr2 150327244 150327244 1 + C T SKCM 150327243 + 150327223 150327263 41 TATCTGTAACTTGCCACTGCCCCGAAATGAAACTGATGCCA TATCTGTAACTTGCCACTGCCTCGAAATGAAACTGATGCCA < 41bp 0.542772458712725 0.780010644157103 0.16558367 0.8811226 prediction 0.474476370888756 Functional Gain - LYPD6 ENSG00000187123 CDS Human protein_coding chr2:150327243 chr2:150327244 synonymous SNV . 0 22 hm5C_associated_SNPs_112284 0 0 0 4 150327221 150327244 mRNA hsa-miR-34a LYPD6 miRanda miRanda
8816 chr2 150327244 150327244 1 + C T SKCM 150327243 + 150327223 150327263 41 TATCTGTAACTTGCCACTGCCCCGAAATGAAACTGATGCCA TATCTGTAACTTGCCACTGCCTCGAAATGAAACTGATGCCA < 41bp 0.542772458712725 0.780010644157103 0.16558367 0.8811226 prediction 0.474476370888756 Functional Gain - LYPD6 ENSG00000187123 CDS Human protein_coding chr2:150327243 chr2:150327244 synonymous SNV . 0 22 hm5C_associated_SNPs_112284 0 0 0 4 150327221 150327244 mRNA hsa-miR-34c-5p LYPD6 miRanda miRanda
8817 chr2 150327244 150327244 1 + C T SKCM 150327243 + 150327223 150327263 41 TATCTGTAACTTGCCACTGCCCCGAAATGAAACTGATGCCA TATCTGTAACTTGCCACTGCCTCGAAATGAAACTGATGCCA < 41bp 0.542772458712725 0.780010644157103 0.16558367 0.8811226 prediction 0.474476370888756 Functional Gain - LYPD6 ENSG00000187123 CDS Human protein_coding chr2:150327243 chr2:150327244 synonymous SNV . 0 22 hm5C_associated_SNPs_112284 0 0 0 4 150327223 150327244 mRNA hsa-miR-449a LYPD6 miRanda miRanda
8818 chr2 150327244 150327244 1 + C T SKCM 150327243 + 150327223 150327263 41 TATCTGTAACTTGCCACTGCCCCGAAATGAAACTGATGCCA TATCTGTAACTTGCCACTGCCTCGAAATGAAACTGATGCCA < 41bp 0.542772458712725 0.780010644157103 0.16558367 0.8811226 prediction 0.474476370888756 Functional Gain - LYPD6 ENSG00000187123 CDS Human protein_coding chr2:150327243 chr2:150327244 synonymous SNV . 0 22 hm5C_associated_SNPs_112284 0 0 0 4 150327223 150327244 mRNA hsa-miR-449b LYPD6 miRanda miRanda
8819 chr3 169496853 169496853 1 + C T SKCM 169496852 + 169496832 169496872 41 GAAGAAGAAGGCTTTCAACTCCCCGAAAACAGGGCAGAATA GAAGAAGAAGGCTTTCAACTCTCCGAAAACAGGGCAGAATA < 41bp 0.478718334494755 0.737166552389675 0.037208885 0.21545687 prediction 0.474333104779351 Functional Gain - MYNN ENSG00000085274 CDS Human protein_coding chr3:169496852 chr3:169496853 synonymous SNV . 0 22 hm5C_associated_SNPs_112312 0 0 1 1 169496847 169496868 mRNA hsa-miR-874 MYNN miRanda miRanda
8820 chr19 37880029 37880029 1 + T G SKCM 37880027 + 37880007 37880047 41 CACTGGAGAGAAACCGTTTGCGTGCAATGAATGTGGGAAGG CACTGGAGAGAAACCGTTTGCGGGCAATGAATGTGGGAAGG < 41bp 0.394070216894069 0.737146639867722 0.19844767 0.7976168 prediction 0.474293279735443 Functional Gain - ZNF527 ENSG00000189164 CDS Human protein_coding chr19:37880027 chr19:37880029 nonsynonymous SNV 0.768 3 23 hm5C_associated_SNPs_112321 0 0 0 10 37880015 37880035 mRNA hsa-miR-25 ZNF527 miRanda miRanda
8821 chr19 37880029 37880029 1 + T G SKCM 37880027 + 37880007 37880047 41 CACTGGAGAGAAACCGTTTGCGTGCAATGAATGTGGGAAGG CACTGGAGAGAAACCGTTTGCGGGCAATGAATGTGGGAAGG < 41bp 0.394070216894069 0.737146639867722 0.19844767 0.7976168 prediction 0.474293279735443 Functional Gain - ZNF527 ENSG00000189164 CDS Human protein_coding chr19:37880027 chr19:37880029 nonsynonymous SNV 0.768 3 23 hm5C_associated_SNPs_112321 0 0 0 10 37880015 37880035 mRNA hsa-miR-32 ZNF527 miRanda miRanda
8822 chr19 37880029 37880029 1 + T G SKCM 37880027 + 37880007 37880047 41 CACTGGAGAGAAACCGTTTGCGTGCAATGAATGTGGGAAGG CACTGGAGAGAAACCGTTTGCGGGCAATGAATGTGGGAAGG < 41bp 0.394070216894069 0.737146639867722 0.19844767 0.7976168 prediction 0.474293279735443 Functional Gain - ZNF527 ENSG00000189164 CDS Human protein_coding chr19:37880027 chr19:37880029 nonsynonymous SNV 0.768 3 23 hm5C_associated_SNPs_112321 0 0 0 10 37880014 37880035 mRNA hsa-miR-92a ZNF527 miRanda miRanda
8823 chr19 37880029 37880029 1 + T G SKCM 37880027 + 37880007 37880047 41 CACTGGAGAGAAACCGTTTGCGTGCAATGAATGTGGGAAGG CACTGGAGAGAAACCGTTTGCGGGCAATGAATGTGGGAAGG < 41bp 0.394070216894069 0.737146639867722 0.19844767 0.7976168 prediction 0.474293279735443 Functional Gain - ZNF527 ENSG00000189164 CDS Human protein_coding chr19:37880027 chr19:37880029 nonsynonymous SNV 0.768 3 23 hm5C_associated_SNPs_112321 0 0 0 10 37880015 37880041 mRNA hsa-miR-181a ZNF527 miRanda miRanda
8824 chr19 37880029 37880029 1 + T G SKCM 37880027 + 37880007 37880047 41 CACTGGAGAGAAACCGTTTGCGTGCAATGAATGTGGGAAGG CACTGGAGAGAAACCGTTTGCGGGCAATGAATGTGGGAAGG < 41bp 0.394070216894069 0.737146639867722 0.19844767 0.7976168 prediction 0.474293279735443 Functional Gain - ZNF527 ENSG00000189164 CDS Human protein_coding chr19:37880027 chr19:37880029 nonsynonymous SNV 0.768 3 23 hm5C_associated_SNPs_112321 0 0 0 10 37880018 37880041 mRNA hsa-miR-181b ZNF527 miRanda miRanda
8825 chr19 37880029 37880029 1 + T G SKCM 37880027 + 37880007 37880047 41 CACTGGAGAGAAACCGTTTGCGTGCAATGAATGTGGGAAGG CACTGGAGAGAAACCGTTTGCGGGCAATGAATGTGGGAAGG < 41bp 0.394070216894069 0.737146639867722 0.19844767 0.7976168 prediction 0.474293279735443 Functional Gain - ZNF527 ENSG00000189164 CDS Human protein_coding chr19:37880027 chr19:37880029 nonsynonymous SNV 0.768 3 23 hm5C_associated_SNPs_112321 0 0 0 10 37880022 37880041 mRNA hsa-miR-181c ZNF527 miRanda miRanda
8826 chr19 37880029 37880029 1 + T G SKCM 37880027 + 37880007 37880047 41 CACTGGAGAGAAACCGTTTGCGTGCAATGAATGTGGGAAGG CACTGGAGAGAAACCGTTTGCGGGCAATGAATGTGGGAAGG < 41bp 0.394070216894069 0.737146639867722 0.19844767 0.7976168 prediction 0.474293279735443 Functional Gain - ZNF527 ENSG00000189164 CDS Human protein_coding chr19:37880027 chr19:37880029 nonsynonymous SNV 0.768 3 23 hm5C_associated_SNPs_112321 0 0 0 10 37880014 37880035 mRNA hsa-miR-363 ZNF527 miRanda miRanda
8827 chr19 37880029 37880029 1 + T G SKCM 37880027 + 37880007 37880047 41 CACTGGAGAGAAACCGTTTGCGTGCAATGAATGTGGGAAGG CACTGGAGAGAAACCGTTTGCGGGCAATGAATGTGGGAAGG < 41bp 0.394070216894069 0.737146639867722 0.19844767 0.7976168 prediction 0.474293279735443 Functional Gain - ZNF527 ENSG00000189164 CDS Human protein_coding chr19:37880027 chr19:37880029 nonsynonymous SNV 0.768 3 23 hm5C_associated_SNPs_112321 0 0 0 10 37880017 37880035 mRNA hsa-miR-367 ZNF527 miRanda miRanda
8828 chr19 37880029 37880029 1 + T G SKCM 37880027 + 37880007 37880047 41 CACTGGAGAGAAACCGTTTGCGTGCAATGAATGTGGGAAGG CACTGGAGAGAAACCGTTTGCGGGCAATGAATGTGGGAAGG < 41bp 0.394070216894069 0.737146639867722 0.19844767 0.7976168 prediction 0.474293279735443 Functional Gain - ZNF527 ENSG00000189164 CDS Human protein_coding chr19:37880027 chr19:37880029 nonsynonymous SNV 0.768 3 23 hm5C_associated_SNPs_112321 0 0 0 10 37880018 37880041 mRNA hsa-miR-181d ZNF527 miRanda miRanda
8829 chr19 37880029 37880029 1 + T G SKCM 37880027 + 37880007 37880047 41 CACTGGAGAGAAACCGTTTGCGTGCAATGAATGTGGGAAGG CACTGGAGAGAAACCGTTTGCGGGCAATGAATGTGGGAAGG < 41bp 0.394070216894069 0.737146639867722 0.19844767 0.7976168 prediction 0.474293279735443 Functional Gain - ZNF527 ENSG00000189164 CDS Human protein_coding chr19:37880027 chr19:37880029 nonsynonymous SNV 0.768 3 23 hm5C_associated_SNPs_112321 0 0 0 10 37880014 37880035 mRNA hsa-miR-92b ZNF527 miRanda miRanda
8830 chr12 52471038 52471038 1 + T A rs1283163 52471034 + 52471014 52471054 41 ACCTTGGCTTTTGGGAATTGCACTTTTGGGCCTTTGGGCTC ACCTTGGCTTTTGGGAATTGCACTATTGGGCCTTTGGGCTC < 41bp 0.423925874779386 0.737076483768192 0.12947354 0.10131988 prediction 0.474152967536383 Functional Gain - ATG101 ENSG00000257663 ncRNA_exonic Human antisense chr12:52471034 chr12:52471038 . . 0 25 hm5C_associated_SNPs_112339 0 0 1 12 52471012 52471040 mRNA hsa-miR-17 C12orf44 miRanda miRanda
8831 chr12 52471038 52471038 1 + T A rs1283163 52471034 + 52471014 52471054 41 ACCTTGGCTTTTGGGAATTGCACTTTTGGGCCTTTGGGCTC ACCTTGGCTTTTGGGAATTGCACTATTGGGCCTTTGGGCTC < 41bp 0.423925874779386 0.737076483768192 0.12947354 0.10131988 prediction 0.474152967536383 Functional Gain - ATG101 ENSG00000257663 ncRNA_exonic Human antisense chr12:52471034 chr12:52471038 . . 0 25 hm5C_associated_SNPs_112339 0 0 1 12 52471012 52471040 mRNA hsa-miR-20a C12orf44 miRanda miRanda
8832 chr12 52471038 52471038 1 + T A rs1283163 52471034 + 52471014 52471054 41 ACCTTGGCTTTTGGGAATTGCACTTTTGGGCCTTTGGGCTC ACCTTGGCTTTTGGGAATTGCACTATTGGGCCTTTGGGCTC < 41bp 0.423925874779386 0.737076483768192 0.12947354 0.10131988 prediction 0.474152967536383 Functional Gain - ATG101 ENSG00000257663 ncRNA_exonic Human antisense chr12:52471034 chr12:52471038 . . 0 25 hm5C_associated_SNPs_112339 0 0 1 12 52471018 52471040 mRNA hsa-miR-93 C12orf44 miRanda miRanda
8833 chr12 52471038 52471038 1 + T A rs1283163 52471034 + 52471014 52471054 41 ACCTTGGCTTTTGGGAATTGCACTTTTGGGCCTTTGGGCTC ACCTTGGCTTTTGGGAATTGCACTATTGGGCCTTTGGGCTC < 41bp 0.423925874779386 0.737076483768192 0.12947354 0.10131988 prediction 0.474152967536383 Functional Gain - ATG101 ENSG00000257663 ncRNA_exonic Human antisense chr12:52471034 chr12:52471038 . . 0 25 hm5C_associated_SNPs_112339 0 0 1 12 52471012 52471040 mRNA hsa-miR-106a C12orf44 miRanda miRanda
8834 chr12 52471038 52471038 1 + T A rs1283163 52471034 + 52471014 52471054 41 ACCTTGGCTTTTGGGAATTGCACTTTTGGGCCTTTGGGCTC ACCTTGGCTTTTGGGAATTGCACTATTGGGCCTTTGGGCTC < 41bp 0.423925874779386 0.737076483768192 0.12947354 0.10131988 prediction 0.474152967536383 Functional Gain - ATG101 ENSG00000257663 ncRNA_exonic Human antisense chr12:52471034 chr12:52471038 . . 0 25 hm5C_associated_SNPs_112339 0 0 1 12 52471017 52471038 mRNA hsa-miR-130a C12orf44 miRanda miRanda
8835 chr12 52471038 52471038 1 + T A rs1283163 52471034 + 52471014 52471054 41 ACCTTGGCTTTTGGGAATTGCACTTTTGGGCCTTTGGGCTC ACCTTGGCTTTTGGGAATTGCACTATTGGGCCTTTGGGCTC < 41bp 0.423925874779386 0.737076483768192 0.12947354 0.10131988 prediction 0.474152967536383 Functional Gain - ATG101 ENSG00000257663 ncRNA_exonic Human antisense chr12:52471034 chr12:52471038 . . 0 25 hm5C_associated_SNPs_112339 0 0 1 12 52471020 52471040 mRNA hsa-miR-106b C12orf44 miRanda miRanda
8836 chr12 52471038 52471038 1 + T A rs1283163 52471034 + 52471014 52471054 41 ACCTTGGCTTTTGGGAATTGCACTTTTGGGCCTTTGGGCTC ACCTTGGCTTTTGGGAATTGCACTATTGGGCCTTTGGGCTC < 41bp 0.423925874779386 0.737076483768192 0.12947354 0.10131988 prediction 0.474152967536383 Functional Gain - ATG101 ENSG00000257663 ncRNA_exonic Human antisense chr12:52471034 chr12:52471038 . . 0 25 hm5C_associated_SNPs_112339 0 0 1 12 52471014 52471038 mRNA hsa-miR-301a C12orf44 miRanda miRanda
8837 chr12 52471038 52471038 1 + T A rs1283163 52471034 + 52471014 52471054 41 ACCTTGGCTTTTGGGAATTGCACTTTTGGGCCTTTGGGCTC ACCTTGGCTTTTGGGAATTGCACTATTGGGCCTTTGGGCTC < 41bp 0.423925874779386 0.737076483768192 0.12947354 0.10131988 prediction 0.474152967536383 Functional Gain - ATG101 ENSG00000257663 ncRNA_exonic Human antisense chr12:52471034 chr12:52471038 . . 0 25 hm5C_associated_SNPs_112339 0 0 1 12 52471017 52471038 mRNA hsa-miR-130b C12orf44 miRanda miRanda
8838 chr12 52471038 52471038 1 + T A rs1283163 52471034 + 52471014 52471054 41 ACCTTGGCTTTTGGGAATTGCACTTTTGGGCCTTTGGGCTC ACCTTGGCTTTTGGGAATTGCACTATTGGGCCTTTGGGCTC < 41bp 0.423925874779386 0.737076483768192 0.12947354 0.10131988 prediction 0.474152967536383 Functional Gain - ATG101 ENSG00000257663 ncRNA_exonic Human antisense chr12:52471034 chr12:52471038 . . 0 25 hm5C_associated_SNPs_112339 0 0 1 12 52471012 52471040 mRNA hsa-miR-20b C12orf44 miRanda miRanda
8839 chr12 52471038 52471038 1 + T A rs1283163 52471034 + 52471014 52471054 41 ACCTTGGCTTTTGGGAATTGCACTTTTGGGCCTTTGGGCTC ACCTTGGCTTTTGGGAATTGCACTATTGGGCCTTTGGGCTC < 41bp 0.423925874779386 0.737076483768192 0.12947354 0.10131988 prediction 0.474152967536383 Functional Gain - ATG101 ENSG00000257663 ncRNA_exonic Human antisense chr12:52471034 chr12:52471038 . . 0 25 hm5C_associated_SNPs_112339 0 0 1 12 52471019 52471040 mRNA hsa-miR-519d C12orf44 miRanda miRanda
8840 chr12 52471038 52471038 1 + T A rs1283163 52471034 + 52471014 52471054 41 ACCTTGGCTTTTGGGAATTGCACTTTTGGGCCTTTGGGCTC ACCTTGGCTTTTGGGAATTGCACTATTGGGCCTTTGGGCTC < 41bp 0.423925874779386 0.737076483768192 0.12947354 0.10131988 prediction 0.474152967536383 Functional Gain - ATG101 ENSG00000257663 ncRNA_exonic Human antisense chr12:52471034 chr12:52471038 . . 0 25 hm5C_associated_SNPs_112339 0 0 1 12 52471018 52471038 mRNA hsa-miR-454 C12orf44 miRanda miRanda
8841 chr12 52471038 52471038 1 + T A rs1283163 52471034 + 52471014 52471054 41 ACCTTGGCTTTTGGGAATTGCACTTTTGGGCCTTTGGGCTC ACCTTGGCTTTTGGGAATTGCACTATTGGGCCTTTGGGCTC < 41bp 0.423925874779386 0.737076483768192 0.12947354 0.10131988 prediction 0.474152967536383 Functional Gain - ATG101 ENSG00000257663 ncRNA_exonic Human antisense chr12:52471034 chr12:52471038 . . 0 25 hm5C_associated_SNPs_112339 0 0 1 12 52471014 52471038 mRNA hsa-miR-301b C12orf44 miRanda miRanda
8842 chr10 129864438 129864438 1 + C T UCEC 129864437 + 129864417 129864457 41 GTTTTGGTCGACTACACCATCCGGAAGTTCTGCATACAGCC GTTTTGGTCGACTACACCATCTGGAAGTTCTGCATACAGCC < 41bp 0.552031122600001 0.788947343391196 0.7100884 0.7864517 prediction 0.473832441582389 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129864437 chr10:129864438 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_112397 0 0 0 1 129864430 129864453 mRNA hsa-miR-361-5p PTPRE miRanda miRanda
8843 chr16 84230624 84230624 1 + C A rs11639669 84230623 + 84230603 84230643 41 GTCCCGGAGCCAAGCTGTACCCCTGCTGGGGGAGTGCCCTA GTCCCGGAGCCAAGCTGTACCACTGCTGGGGGAGTGCCCTA < 41bp 0.529302322686267 0.766202103574382 0.08507106 0.13604164 prediction 0.473799561776229 Functional Gain - LOC654780 ENSG00000250685 ncRNA_exonic Human antisense chr16:84230623 chr16:84230624 . . 0 22 hm5C_associated_SNPs_112404 0 0 0 1 84230619 84230640 mRNA hsa-miR-324-5p ADAD2 miRanda miRanda
8844 chr12 100904813 100904813 1 + C T CESC 100904812 + 100904792 100904832 41 ATGCCTGTAACAAAGAAGCCCCGCATGGGCGCGTCAGCAGG ATGCCTGTAACAAAGAAGCCCTGCATGGGCGCGTCAGCAGG < 41bp 0.568092393544943 0.804973565514493 0.033926398 0.4589321 prediction 0.4737623439391 Functional Gain - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100904812 chr12:100904813 nonsynonymous SNV 0.911 5 22 hm5C_associated_SNPs_112412 0 0 0 1 100904812 100904833 mRNA hsa-miR-370 NR1H4 miRanda miRanda
8845 chr3 125643926 125643926 1 + C A HNSC 125643925 + 125643905 125643945 41 TGGCCTTTACTGTCCGCAACCCAGAGACATGCCAGCTGTTC TGGCCTTTACTGTCCGCAACCAAGAGACATGCCAGCTGTTC < 41bp 0.550806223650871 0.787567666558668 0.8406817 0.8939543 prediction 0.473522885815595 Functional Gain - FAM86JP ENSG00000171084 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:125643925 chr3:125643926 . . 0 22 hm5C_associated_SNPs_112463 0 0 0 2 125643911 125643931 mRNA hsa-miR-330-5p LOC100125556 miRanda miRanda
8846 chr3 125643926 125643926 1 + C A HNSC 125643925 + 125643905 125643945 41 TGGCCTTTACTGTCCGCAACCCAGAGACATGCCAGCTGTTC TGGCCTTTACTGTCCGCAACCAAGAGACATGCCAGCTGTTC < 41bp 0.550806223650871 0.787567666558668 0.8406817 0.8939543 prediction 0.473522885815595 Functional Gain - FAM86JP ENSG00000171084 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:125643925 chr3:125643926 . . 0 22 hm5C_associated_SNPs_112463 0 0 0 2 125643912 125643931 mRNA hsa-miR-326 LOC100125556 miRanda miRanda
8847 chr3 24003595 24003595 1 + T C UCEC 24003593 + 24003573 24003613 41 AAAATGACACATTAGTAGAACATCATGAACAGACAGCCTTG AAAATGACACATTAGTAGAACACCATGAACAGACAGCCTTG < 41bp 0.467291248705337 0.736740439458125 0.07175097 0.051350147 prediction 0.473480878916251 Functional Gain - NR1D2 ENSG00000174738 CDS Human protein_coding chr3:24003593 chr3:24003595 synonymous SNV . 0 23 hm5C_associated_SNPs_112469 0 0 1 1 24003580 24003601 mRNA hsa-miR-433 NR1D2 miRanda miRanda
8848 chr1 107937907 107937907 1 + C G LUSC 107937906 + 107937886 107937926 41 ATCAGGGCCGACCTTGGAGTCCAGGCTCCTATCTCCCCATC ATCAGGGCCGACCTTGGAGTCGAGGCTCCTATCTCCCCATC < 41bp 0.617968537841148 0.854632830465799 0.24454978 0.8053845 prediction 0.473328585249302 Functional Gain - NTNG1 ENSG00000162631 CDS Human protein_coding chr1:107937906 chr1:107937907 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_112500 0 0 0 2 107937889 107937910 mRNA hsa-miR-378 NTNG1 miRanda miRanda
8849 chr1 107937907 107937907 1 + C G LUSC 107937906 + 107937886 107937926 41 ATCAGGGCCGACCTTGGAGTCCAGGCTCCTATCTCCCCATC ATCAGGGCCGACCTTGGAGTCGAGGCTCCTATCTCCCCATC < 41bp 0.617968537841148 0.854632830465799 0.24454978 0.8053845 prediction 0.473328585249302 Functional Gain - NTNG1 ENSG00000162631 CDS Human protein_coding chr1:107937906 chr1:107937907 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_112500 0 0 0 2 107937888 107937910 mRNA hsa-miR-422a NTNG1 miRanda miRanda
8850 chr9 128728190 128728190 1 + T A ESCA 128728186 + 128728166 128728206 41 AGGCCCAGGAAGTGTGCACTCGGATACCTCTAACTAATCTC AGGCCCAGGAAGTGTGCACTCGGAAACCTCTAACTAATCTC < 41bp 0.626355771461115 0.862994476601119 0.081369966 0.050340652 prediction 0.473277410280007 Functional Gain - PBX3 ENSG00000167081 CDS Human protein_coding chr9:128728186 chr9:128728190 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_112506 0 0 1 1 128728174 128728196 mRNA hsa-miR-202 PBX3 miRanda miRanda
8851 chr1 111825931 111825931 1 + T C UCEC 111825929 + 111825909 111825949 41 TACCCGGACTACATCCATGTCATGACCTATGACCTCCATGG TACCCGGACTACATCCATGTCACGACCTATGACCTCCATGG < 41bp 0.529085018474255 0.765633848938968 0.13047808 0.066964686 prediction 0.473097660929428 Functional Gain - CHIAP2 ENSG00000203878 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:111825929 chr1:111825931 . . 0 23 hm5C_associated_SNPs_112537 0 0 0 1 111825925 111825945 mRNA hsa-miR-202 LOC149620 miRanda miRanda
8852 chr5 68525816 68525816 1 + C G rs183528654 68525815 + 68525795 68525835 41 TTGTGATCTTGTATGCAAATCCTGATAACCATTAACCTTCT TTGTGATCTTGTATGCAAATCGTGATAACCATTAACCTTCT < 41bp 0.527868874756178 0.764067594916079 0.049600184 0.13303441 prediction 0.472397440319802 Functional Gain - MRPS36 ENSG00000134056 UTR3 Human protein_coding chr5:68525815 chr5:68525816 . . 0 22 hm5C_associated_SNPs_112670 0 0 1 1 68525801 68525822 mRNA hsa-miR-361-5p MRPS36 miRanda miRanda
8853 chr14 74826683 74826683 1 + C G rs77905481 74826682 + 74826662 74826702 41 TCGAGAGTAACGTTTGAAAACCAAAGAAATAAAGTGATGCA TCGAGAGTAACGTTTGAAAACGAAAGAAATAAAGTGATGCA < 41bp 0.502673264748751 0.738848885396603 0.2910443 0.46480405 prediction 0.472351241295703 Functional Gain - VRTN ENSG00000133980 UTR3 Human protein_coding chr14:74826682 chr14:74826683 . . 0 22 hm5C_associated_SNPs_112679 0 0 0 2 74826683 74826705 mRNA hsa-miR-217 C14orf115 miRanda miRanda
8854 chr14 74826683 74826683 1 + C G rs77905481 74826682 + 74826662 74826702 41 TCGAGAGTAACGTTTGAAAACCAAAGAAATAAAGTGATGCA TCGAGAGTAACGTTTGAAAACGAAAGAAATAAAGTGATGCA < 41bp 0.502673264748751 0.738848885396603 0.2910443 0.46480405 prediction 0.472351241295703 Functional Gain - VRTN ENSG00000133980 UTR3 Human protein_coding chr14:74826682 chr14:74826683 . . 0 22 hm5C_associated_SNPs_112679 0 0 0 2 74826666 74826688 mRNA hsa-miR-9 C14orf115 miRanda miRanda
8855 chr9 21854770 21854770 1 + C A COAD 21854769 + 21854749 21854789 41 GGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTC GGCGGATGTTATCAACATGACAACAGTTCCAGAGGTGGTTC < 41bp 0.502822741347258 0.738875654019471 0.03824976 0.04273498 prediction 0.472105825344427 Functional Gain - MTAP ENSG00000099810 CDS Human protein_coding chr9:21854769 chr9:21854770 synonymous SNV . 0 22 hm5C_associated_SNPs_112726 0 0 0 1 21854748 21854770 mRNA hsa-miR-223 MTAP miRanda miRanda
8856 chr18 9886890 9886890 1 + A G rs601874 9886887 + 9886867 9886907 41 AAGGAGGACCTCCCCAAGTCCTCAGAAAAAGCCATCCAGCC AAGGAGGACCTCCCCAAGTCCTCGGAAAAAGCCATCCAGCC < 41bp 0.511825597635681 0.747865588644932 0.047712535 0.073786855 prediction 0.472079982018502 Functional Gain - TXNDC2 ENSG00000168454 CDS Human protein_coding chr18:9886887 chr18:9886890 synonymous SNV . 0 24 hm5C_associated_SNPs_112731 0 0 0 2 9886880 9886902 mRNA hsa-miR-135a TXNDC2 miRanda miRanda
8857 chr18 9886890 9886890 1 + A G rs601874 9886887 + 9886867 9886907 41 AAGGAGGACCTCCCCAAGTCCTCAGAAAAAGCCATCCAGCC AAGGAGGACCTCCCCAAGTCCTCGGAAAAAGCCATCCAGCC < 41bp 0.511825597635681 0.747865588644932 0.047712535 0.073786855 prediction 0.472079982018502 Functional Gain - TXNDC2 ENSG00000168454 CDS Human protein_coding chr18:9886887 chr18:9886890 synonymous SNV . 0 24 hm5C_associated_SNPs_112731 0 0 0 2 9886880 9886902 mRNA hsa-miR-135b TXNDC2 miRanda miRanda
8858 chr2 219619127 219619127 1 + A G rs147710885 219619124 + 219619104 219619144 41 AGCCCATAACTGGCCTCTCTCCAAAAGCCTCTGCCCAGGAG AGCCCATAACTGGCCTCTCTCCAGAAGCCTCTGCCCAGGAG < 41bp 0.504073418525786 0.740079691366385 0.40703905 0.91702294 prediction 0.472012545681198 Functional Gain - TTLL4 ENSG00000135912 UTR3 Human protein_coding chr2:219619124 chr2:219619127 . . 0 24 hm5C_associated_SNPs_112749 0 0 1 1 219619125 219619147 mRNA hsa-miR-874 TTLL4 miRanda miRanda
8859 chr11 2338593 2338593 1 + C A SKCM 2338592 + 2338572 2338612 41 AGAGCATGTGGCCGCCAGCCCCAGGAGCCCAGCCTCTTGAG AGAGCATGTGGCCGCCAGCCCAAGGAGCCCAGCCTCTTGAG < 41bp 0.541396317708376 0.777334149975087 0.91728795 0.9264841 prediction 0.471875664533421 Functional Gain - TSPAN32 ENSG00000064201 CDS Human protein_coding chr11:2338592 chr11:2338593 nonsynonymous SNV 0.610 2 22 hm5C_associated_SNPs_112773 0 0 0 1 2338587 2338608 mRNA hsa-miR-485-5p TSPAN32 miRanda miRanda
8860 chr20 42264576 42264576 1 + C G LGG 42264572 + 42264552 42264592 41 GATTATGAACACAGGGCTCACGAGCAGCTAAATGTGAAACA GATTATGAACACAGGGCTCACGAGGAGCTAAATGTGAAACA < 41bp 0.449953156495133 0.735800889900386 0.19781232 0.7196778 prediction 0.471601779800771 Functional Gain - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42264572 chr20:42264576 nonsynonymous SNV 0.964 0 25 hm5C_associated_SNPs_112818 0 0 1 2 42264569 42264589 mRNA hsa-miR-23a IFT52 miRanda miRanda
8861 chr20 42264576 42264576 1 + C G LGG 42264572 + 42264552 42264592 41 GATTATGAACACAGGGCTCACGAGCAGCTAAATGTGAAACA GATTATGAACACAGGGCTCACGAGGAGCTAAATGTGAAACA < 41bp 0.449953156495133 0.735800889900386 0.19781232 0.7196778 prediction 0.471601779800771 Functional Gain - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42264572 chr20:42264576 nonsynonymous SNV 0.964 0 25 hm5C_associated_SNPs_112818 0 0 1 2 42264569 42264589 mRNA hsa-miR-23b IFT52 miRanda miRanda
8862 chr7 100551276 100551276 1 + A G UCEC 100551273 + 100551253 100551293 41 TACTCCACAGTCAGCACATCCACAACTGCCATCACCTCACA TACTCCACAGTCAGCACATCCACGACTGCCATCACCTCACA < 41bp 0.502008238904349 0.737782843747496 0.022139966 0.054942995 prediction 0.471549209686294 Functional Gain - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100551273 chr7:100551276 synonymous SNV . 0 24 hm5C_associated_SNPs_112828 0 0 0 3 100551259 100551283 mRNA hsa-miR-34c-5p MUC3A miRanda miRanda
8863 chr7 100551276 100551276 1 + A G UCEC 100551273 + 100551253 100551293 41 TACTCCACAGTCAGCACATCCACAACTGCCATCACCTCACA TACTCCACAGTCAGCACATCCACGACTGCCATCACCTCACA < 41bp 0.502008238904349 0.737782843747496 0.022139966 0.054942995 prediction 0.471549209686294 Functional Gain - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100551273 chr7:100551276 synonymous SNV . 0 24 hm5C_associated_SNPs_112828 0 0 0 3 100551258 100551283 mRNA hsa-miR-449a MUC3A miRanda miRanda
8864 chr7 100551276 100551276 1 + A G UCEC 100551273 + 100551253 100551293 41 TACTCCACAGTCAGCACATCCACAACTGCCATCACCTCACA TACTCCACAGTCAGCACATCCACGACTGCCATCACCTCACA < 41bp 0.502008238904349 0.737782843747496 0.022139966 0.054942995 prediction 0.471549209686294 Functional Gain - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100551273 chr7:100551276 synonymous SNV . 0 24 hm5C_associated_SNPs_112828 0 0 0 3 100551258 100551283 mRNA hsa-miR-449b MUC3A miRanda miRanda
8865 chr14 23945564 23945564 1 + C T COAD 23945563 + 23945543 23945583 41 TCAGATGCTCCAGAGGAAATCCGTGATGCTCGGCATCCCCA TCAGATGCTCCAGAGGAAATCTGTGATGCTCGGCATCCCCA < 41bp 0.49014571012383 0.735733043737764 0.38179642 0.3381354 prediction 0.471466087475528 Functional Gain - NGDN ENSG00000129460 CDS Human protein_coding chr14:23945563 chr14:23945564 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112847 0 0 1 1 23945545 23945565 mRNA hsa-miR-876-5p NGDN miRanda miRanda
8866 chr3 113321989 113321989 1 + C T BLCA 113321988 + 113321968 113322008 41 GAGAGTGATAAAAACATCATCCGGACCAAGGTACCCACTCT GAGAGTGATAAAAACATCATCTGGACCAAGGTACCCACTCT < 41bp 0.534628471399229 0.770272018095177 0.19620037 0.066538066 prediction 0.471287093391896 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113321988 chr3:113321989 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112886 0 0 0 2 113321976 113321997 mRNA hsa-miR-133a SIDT1 miRanda miRanda
8867 chr3 113321989 113321989 1 + C T BLCA 113321988 + 113321968 113322008 41 GAGAGTGATAAAAACATCATCCGGACCAAGGTACCCACTCT GAGAGTGATAAAAACATCATCTGGACCAAGGTACCCACTCT < 41bp 0.534628471399229 0.770272018095177 0.19620037 0.066538066 prediction 0.471287093391896 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113321988 chr3:113321989 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_112886 0 0 0 2 113321976 113321997 mRNA hsa-miR-133b SIDT1 miRanda miRanda
8868 chr10 101515451 101515451 1 + C A LUAD 101515450 + 101515430 101515470 41 CCTAAAGGTAACAGATGTGACCAAAGTAAGGACTTTGAATG CCTAAAGGTAACAGATGTGACAAAAGTAAGGACTTTGAATG < 41bp 0.533934488348373 0.769564389631066 0.106695 0.28401488 prediction 0.471259802565387 Functional Gain - CUTC ENSG00000119929 CDS Human protein_coding chr10:101515450 chr10:101515451 synonymous SNV . 0 22 hm5C_associated_SNPs_112889 0 0 1 1 101515436 101515456 mRNA hsa-miR-9 CUTC miRanda miRanda
8869 chr2 69015017 69015017 1 + T C UCEC 69015015 + 69014995 69015035 41 GGACAGGACTCCTATGTCCTCATGGCCAGCTCTCAGGCGGA GGACAGGACTCCTATGTCCTCACGGCCAGCTCTCAGGCGGA < 41bp 0.464244881199747 0.735246075191133 0.16544127 0.30977008 prediction 0.470492150382265 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69015015 chr2:69015017 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_113038 0 0 0 1 69015006 69015029 mRNA hsa-miR-485-5p ARHGAP25 miRanda miRanda
8870 chr10 118139079 118139079 1 + T G rs112802507 118139076 + 118139056 118139096 41 CTCAAACTTTAAGAGTTCTTCTGTGGTTTGATTTTGTTTCT CTCAAACTTTAAGAGTTCTTCTGGGGTTTGATTTTGTTTCT < 41bp 0.399907063136588 0.735242660117569 0.06421149 0.83809173 prediction 0.470485320235138 Functional Gain - CCDC172 ENSG00000182645 UTR3 Human protein_coding chr10:118139076 chr10:118139079 . . 0 24 hm5C_associated_SNPs_113042 0 0 0 1 118139075 118139096 mRNA hsa-miR-494 C10orf96 miRanda miRanda
8871 chr16 89629420 89629420 1 + C T STAD 89629419 + 89629399 89629439 41 GGCAAAAAGAGCCAAGGAAGCCGCAGAACAGGATGTTGAAA GGCAAAAAGAGCCAAGGAAGCTGCAGAACAGGATGTTGAAA < 41bp 0.526776678345103 0.76199745645869 0.46787176 0.330293 prediction 0.470441556227174 Functional Gain - RPL13 ENSG00000167526 CDS Human protein_coding chr16:89629419 chr16:89629420 synonymous SNV . 0 22 hm5C_associated_SNPs_113050 0 0 1 2 89629413 89629439 mRNA hsa-miR-505 RPL13 miRanda miRanda
8872 chr16 89629420 89629420 1 + C T STAD 89629419 + 89629399 89629439 41 GGCAAAAAGAGCCAAGGAAGCCGCAGAACAGGATGTTGAAA GGCAAAAAGAGCCAAGGAAGCTGCAGAACAGGATGTTGAAA < 41bp 0.526776678345103 0.76199745645869 0.46787176 0.330293 prediction 0.470441556227174 Functional Gain - RPL13 ENSG00000167526 CDS Human protein_coding chr16:89629419 chr16:89629420 synonymous SNV . 0 22 hm5C_associated_SNPs_113050 0 0 1 2 89629416 89629438 mRNA hsa-miR-421 RPL13 miRanda miRanda
8873 chr17 19445740 19445740 1 + T C UCEC 19445738 + 19445718 19445758 41 CTGATGGTGTTCCTGATCAGCTTCATAAGCTCCGTGTTCTG CTGATGGTGTTCCTGATCAGCTCCATAAGCTCCGTGTTCTG < 41bp 0.455060282835813 0.735159319300891 0.16304597 0.9273521 prediction 0.470318638601782 Functional Gain - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19445738 chr17:19445740 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_113076 0 0 1 2 19445728 19445749 mRNA hsa-miR-21 SLC47A1 miRanda miRanda
8874 chr17 19445740 19445740 1 + T C UCEC 19445738 + 19445718 19445758 41 CTGATGGTGTTCCTGATCAGCTTCATAAGCTCCGTGTTCTG CTGATGGTGTTCCTGATCAGCTCCATAAGCTCCGTGTTCTG < 41bp 0.455060282835813 0.735159319300891 0.16304597 0.9273521 prediction 0.470318638601782 Functional Gain - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19445738 chr17:19445740 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_113076 0 0 1 2 19445728 19445749 mRNA hsa-miR-590-5p SLC47A1 miRanda miRanda
8875 chr4 71511650 71511650 1 + C G rs116148244 71511646 + 71511626 71511666 41 AGAATGAGGAACTGAAGAAACTGCCGCTCTGAGACTGCACA AGAATGAGGAACTGAAGAAACTGCGGCTCTGAGACTGCACA < 41bp 0.554313107372612 0.789410058525507 0.38553074 0.8145767 prediction 0.470193902305791 Functional Gain - ENAM ENSG00000132464 UTR3 Human protein_coding chr4:71511646 chr4:71511650 . . 0 25 hm5C_associated_SNPs_113098 0 0 0 1 71511645 71511667 mRNA hsa-miR-210 ENAM miRanda miRanda
8876 chr8 39525680 39525680 1 + C A rs553132086 39525676 + 39525656 39525696 41 ATTGCTATAACGGACAATGTCAAACTACTGATAACCAGTGT ATTGCTATAACGGACAATGTCAAAATACTGATAACCAGTGT < 41bp 0.32495936723903 0.735011965306286 0.33661532 0.24829623 prediction 0.470023930612572 Functional Gain - ADAM18 ENSG00000168619 CDS Human protein_coding chr8:39525676 chr8:39525680 nonsynonymous SNV 0.790 0 25 hm5C_associated_SNPs_113124 0 0 0 2 39525680 39525702 mRNA hsa-miR-96 ADAM18 miRanda miRanda
8877 chr8 39525680 39525680 1 + C A rs553132086 39525676 + 39525656 39525696 41 ATTGCTATAACGGACAATGTCAAACTACTGATAACCAGTGT ATTGCTATAACGGACAATGTCAAAATACTGATAACCAGTGT < 41bp 0.32495936723903 0.735011965306286 0.33661532 0.24829623 prediction 0.470023930612572 Functional Gain - ADAM18 ENSG00000168619 CDS Human protein_coding chr8:39525676 chr8:39525680 nonsynonymous SNV 0.790 0 25 hm5C_associated_SNPs_113124 0 0 0 2 39525680 39525702 mRNA hsa-miR-1271 ADAM18 miRanda miRanda
8878 chr17 18638684 18638684 1 + C G LUSC 18638680 + 18638660 18638700 41 GAACCAGTCTATGCTGCCTTCTGGCTTTCCAAGAAGGAAAA GAACCAGTCTATGCTGCCTTCTGGGTTTCCAAGAAGGAAAA < 41bp 0.588691196979506 0.823682556808886 0.3411597 0.656822 prediction 0.469982719658761 Functional Gain - TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18638680 chr17:18638684 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_113133 0 0 0 1 18638684 18638707 mRNA hsa-miR-135b TRIM16L miRanda miRanda
8879 chr1 11718626 11718626 1 + C T UCEC 11718625 + 11718605 11718645 41 CCAGGTGGTGGACCTCAAGGCCGAAGGGTATTGGGAGGAGC CCAGGTGGTGGACCTCAAGGCTGAAGGGTATTGGGAGGAGC < 41bp 0.540404273881512 0.775389850241401 0.3087405 0.39344925 prediction 0.469971152719777 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718625 chr1:11718626 stopgain 0.984 0 22 hm5C_associated_SNPs_113135 0 0 1 1 11718619 11718642 mRNA hsa-miR-150 FBXO44 miRanda miRanda
8880 chr20 3087579 3087579 1 + C G rs115970705 3087575 + 3087555 3087595 41 GCAGACCTACTTACAGCCACCGAGCGTCAGAAGGCCCATCT GCAGACCTACTTACAGCCACCGAGGGTCAGAAGGCCCATCT < 41bp 0.60343643808778 0.838311119515862 0.6677407 0.8705558 prediction 0.469749362856164 Functional Gain - UBOX5-AS1 ENSG00000235958 ncRNA_exonic Human antisense chr20:3087575 chr20:3087579 . . 0 25 hm5C_associated_SNPs_113174 0 0 0 1 3087557 3087580 mRNA hsa-miR-138 LOC100134015 miRanda miRanda
8881 chr8 96044275 96044275 1 + C T STAD 96044274 + 96044254 96044294 41 CTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACT CTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACT < 41bp 0.481482208684555 0.734761892304681 0.38824707 0.44514576 prediction 0.469523784609362 Functional Gain - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044274 chr8:96044275 stopgain 0.994 0 22 hm5C_associated_SNPs_113208 0 0 1 8 96044272 96044294 mRNA hsa-miR-19a C8orf38 miRanda miRanda
8882 chr8 96044275 96044275 1 + C T STAD 96044274 + 96044254 96044294 41 CTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACT CTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACT < 41bp 0.481482208684555 0.734761892304681 0.38824707 0.44514576 prediction 0.469523784609362 Functional Gain - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044274 chr8:96044275 stopgain 0.994 0 22 hm5C_associated_SNPs_113208 0 0 1 8 96044272 96044294 mRNA hsa-miR-19b C8orf38 miRanda miRanda
8883 chr8 96044275 96044275 1 + C T STAD 96044274 + 96044254 96044294 41 CTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACT CTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACT < 41bp 0.481482208684555 0.734761892304681 0.38824707 0.44514576 prediction 0.469523784609362 Functional Gain - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044274 chr8:96044275 stopgain 0.994 0 22 hm5C_associated_SNPs_113208 0 0 1 8 96044274 96044296 mRNA hsa-miR-148a C8orf38 miRanda miRanda
8884 chr8 96044275 96044275 1 + C T STAD 96044274 + 96044254 96044294 41 CTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACT CTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACT < 41bp 0.481482208684555 0.734761892304681 0.38824707 0.44514576 prediction 0.469523784609362 Functional Gain - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044274 chr8:96044275 stopgain 0.994 0 22 hm5C_associated_SNPs_113208 0 0 1 8 96044275 96044296 mRNA hsa-miR-152 C8orf38 miRanda miRanda
8885 chr8 96044275 96044275 1 + C T STAD 96044274 + 96044254 96044294 41 CTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACT CTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACT < 41bp 0.481482208684555 0.734761892304681 0.38824707 0.44514576 prediction 0.469523784609362 Functional Gain - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044274 chr8:96044275 stopgain 0.994 0 22 hm5C_associated_SNPs_113208 0 0 1 8 96044273 96044295 mRNA hsa-miR-301a C8orf38 miRanda miRanda
8886 chr8 96044275 96044275 1 + C T STAD 96044274 + 96044254 96044294 41 CTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACT CTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACT < 41bp 0.481482208684555 0.734761892304681 0.38824707 0.44514576 prediction 0.469523784609362 Functional Gain - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044274 chr8:96044275 stopgain 0.994 0 22 hm5C_associated_SNPs_113208 0 0 1 8 96044274 96044296 mRNA hsa-miR-148b C8orf38 miRanda miRanda
8887 chr8 96044275 96044275 1 + C T STAD 96044274 + 96044254 96044294 41 CTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACT CTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACT < 41bp 0.481482208684555 0.734761892304681 0.38824707 0.44514576 prediction 0.469523784609362 Functional Gain - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044274 chr8:96044275 stopgain 0.994 0 22 hm5C_associated_SNPs_113208 0 0 1 8 96044270 96044295 mRNA hsa-miR-454 C8orf38 miRanda miRanda
8888 chr8 96044275 96044275 1 + C T STAD 96044274 + 96044254 96044294 41 CTGCTGCTCCCTGCAGAATCCCGAAGCTCTGTTTTTGCACT CTGCTGCTCCCTGCAGAATCCTGAAGCTCTGTTTTTGCACT < 41bp 0.481482208684555 0.734761892304681 0.38824707 0.44514576 prediction 0.469523784609362 Functional Gain - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96044274 chr8:96044275 stopgain 0.994 0 22 hm5C_associated_SNPs_113208 0 0 1 8 96044273 96044295 mRNA hsa-miR-301b C8orf38 miRanda miRanda
8889 chr11 66330659 66330659 1 + C A OV 66330655 + 66330635 66330675 41 AGTGCCCTCTATGGGGAGAGCGACCTTTGACCCCAACCACT AGTGCCCTCTATGGGGAGAGCGACATTTGACCCCAACCACT < 41bp 0.343080890453744 0.734676927068809 0.09669548 0.24200708 prediction 0.469353854137619 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66330655 chr11:66330659 unknown 0.985 1 25 hm5C_associated_SNPs_113242 0 0 0 1 66330653 66330676 mRNA hsa-miR-296-3p ACTN3 miRanda miRanda
8890 chr6 88210933 88210933 1 + C T GBM 88210932 + 88210912 88210952 41 TGCACTGTTTTAATGTTAAACCGGACACTCAGCAAATTACA TGCACTGTTTTAATGTTAAACTGGACACTCAGCAAATTACA < 41bp 0.51633386969251 0.750996666848152 0.036772907 0.030099541 prediction 0.469325594311284 Functional Gain - SLC35A1 ENSG00000164414 CDS Human protein_coding chr6:88210932 chr6:88210933 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_113246 0 0 1 1 88210927 88210948 mRNA hsa-miR-450a SLC35A1 miRanda miRanda
8891 chr19 36205789 36205789 1 + T C HNSC 36205787 + 36205767 36205807 41 GGGAGAGTGTAGAGCTGCAGCCTGGAGAGCTAAGGCCCCTT GGGAGAGTGTAGAGCTGCAGCCCGGAGAGCTAAGGCCCCTT < 41bp 0.556136331637275 0.79076395656529 0.3850819 0.21633825 prediction 0.469255249856029 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205787 chr19:36205789 synonymous SNV . 0 23 hm5C_associated_SNPs_113260 0 0 0 1 36205767 36205789 mRNA hsa-miR-24 ZBTB32 miRanda miRanda
8892 chr17 57270975 57270975 1 + C A HNSC 57270974 + 57270954 57270994 41 CTCCAAAGCTGTGCTTCCTCCCACACTGCCACAGCCAGCCA CTCCAAAGCTGTGCTTCCTCCAACACTGCCACAGCCAGCCA < 41bp 0.563565816182146 0.798045258964893 0.053317964 0.038869232 prediction 0.468958885565494 Functional Gain - PRR11 ENSG00000068489 CDS Human protein_coding chr17:57270974 chr17:57270975 synonymous SNV . 0 22 hm5C_associated_SNPs_113303 0 0 1 4 57270963 57270984 mRNA hsa-miR-34a PRR11 miRanda miRanda
8893 chr17 57270975 57270975 1 + C A HNSC 57270974 + 57270954 57270994 41 CTCCAAAGCTGTGCTTCCTCCCACACTGCCACAGCCAGCCA CTCCAAAGCTGTGCTTCCTCCAACACTGCCACAGCCAGCCA < 41bp 0.563565816182146 0.798045258964893 0.053317964 0.038869232 prediction 0.468958885565494 Functional Gain - PRR11 ENSG00000068489 CDS Human protein_coding chr17:57270974 chr17:57270975 synonymous SNV . 0 22 hm5C_associated_SNPs_113303 0 0 1 4 57270962 57270984 mRNA hsa-miR-34c-5p PRR11 miRanda miRanda
8894 chr17 57270975 57270975 1 + C A HNSC 57270974 + 57270954 57270994 41 CTCCAAAGCTGTGCTTCCTCCCACACTGCCACAGCCAGCCA CTCCAAAGCTGTGCTTCCTCCAACACTGCCACAGCCAGCCA < 41bp 0.563565816182146 0.798045258964893 0.053317964 0.038869232 prediction 0.468958885565494 Functional Gain - PRR11 ENSG00000068489 CDS Human protein_coding chr17:57270974 chr17:57270975 synonymous SNV . 0 22 hm5C_associated_SNPs_113303 0 0 1 4 57270963 57270984 mRNA hsa-miR-449a PRR11 miRanda miRanda
8895 chr17 57270975 57270975 1 + C A HNSC 57270974 + 57270954 57270994 41 CTCCAAAGCTGTGCTTCCTCCCACACTGCCACAGCCAGCCA CTCCAAAGCTGTGCTTCCTCCAACACTGCCACAGCCAGCCA < 41bp 0.563565816182146 0.798045258964893 0.053317964 0.038869232 prediction 0.468958885565494 Functional Gain - PRR11 ENSG00000068489 CDS Human protein_coding chr17:57270974 chr17:57270975 synonymous SNV . 0 22 hm5C_associated_SNPs_113303 0 0 1 4 57270963 57270984 mRNA hsa-miR-449b PRR11 miRanda miRanda
8896 chr2 202050677 202050677 1 + A G rs3900115 202050674 + 202050654 202050694 41 CTGGAGAAGTCCAGCTCAGCCTCAGATGTTTTTGAACATCT CTGGAGAAGTCCAGCTCAGCCTCGGATGTTTTTGAACATCT < 41bp 0.50632101993138 0.740596907985053 0.034826785 0.036415458 prediction 0.468551776107345 Functional Gain - CASP10 ENSG00000003400 CDS Human protein_coding chr2:202050674 chr2:202050677 synonymous SNV . 0 24 hm5C_associated_SNPs_113376 2 0 0 1 202050656 202050677 mRNA hsa-miR-485-5p CASP10 miRanda miRanda
8897 chr6 154412274 154412274 1 + T C UCEC 154412272 + 154412252 154412292 41 CCAAAGAAAAGGACAGGAATCTTCGAAGGATCACCAGGATG CCAAAGAAAAGGACAGGAATCTCCGAAGGATCACCAGGATG < 41bp 0.493299783847181 0.734130906643071 0.17750457 0.42469087 prediction 0.468261813286142 Functional Gain - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154412272 chr6:154412274 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_113431 0 0 0 1 154412274 154412298 mRNA hsa-miR-29b OPRM1 miRanda miRanda
8898 chr11 129321713 129321713 1 + C A rs116821632 129321712 + 129321692 129321732 41 GCGGCATGTGGGCAGCATGCCCAGGTTCCTTGCTGACTCAG GCGGCATGTGGGCAGCATGCCAAGGTTCCTTGCTGACTCAG < 41bp 0.550928136802855 0.785017556400564 0.42240012 0.5507002 prediction 0.468178839195418 Functional Gain - BARX2 ENSG00000043039 UTR3 Human protein_coding chr11:129321712 chr11:129321713 . . 0 22 hm5C_associated_SNPs_113446 0 0 1 1 129321693 129321719 mRNA hsa-miR-490-3p BARX2 miRanda miRanda
8899 chr6 44116545 44116545 1 + C T UCEC 44116544 + 44116524 44116564 41 GCCAGGGAGCACCTCTCCATCCGAGGCTTCATCTGGTGGCT GCCAGGGAGCACCTCTCCATCTGAGGCTTCATCTGGTGGCT < 41bp 0.530610698304418 0.764672063397952 0.96330583 0.92978704 prediction 0.468122730187067 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116544 chr6:44116545 stopgain 1.000 1 22 hm5C_associated_SNPs_113460 0 0 1 3 44116541 44116565 mRNA hsa-miR-29a TMEM63B miRanda miRanda
8900 chr6 44116545 44116545 1 + C T UCEC 44116544 + 44116524 44116564 41 GCCAGGGAGCACCTCTCCATCCGAGGCTTCATCTGGTGGCT GCCAGGGAGCACCTCTCCATCTGAGGCTTCATCTGGTGGCT < 41bp 0.530610698304418 0.764672063397952 0.96330583 0.92978704 prediction 0.468122730187067 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116544 chr6:44116545 stopgain 1.000 1 22 hm5C_associated_SNPs_113460 0 0 1 3 44116542 44116565 mRNA hsa-miR-29b TMEM63B miRanda miRanda
8901 chr6 44116545 44116545 1 + C T UCEC 44116544 + 44116524 44116564 41 GCCAGGGAGCACCTCTCCATCCGAGGCTTCATCTGGTGGCT GCCAGGGAGCACCTCTCCATCTGAGGCTTCATCTGGTGGCT < 41bp 0.530610698304418 0.764672063397952 0.96330583 0.92978704 prediction 0.468122730187067 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116544 chr6:44116545 stopgain 1.000 1 22 hm5C_associated_SNPs_113460 0 0 1 3 44116541 44116565 mRNA hsa-miR-29c TMEM63B miRanda miRanda
8902 chr15 85188990 85188990 1 - G A rs373323041 85188991 - 85188971 85189011 41 GCCTTCTGCTGTGCTTCAGGCCGGCTGGGGCTTGTTGACAC GCCTTCTGCTGTGCTTCAGGCTGGCTGGGGCTTGTTGACAC < 41bp 0.514608731668434 0.74861078001332 0.14444515 0.16760325 prediction 0.46800409668977 Functional Gain - WDR73 ENSG00000177082 CDS Human protein_coding chr15:85188991 chr15:85188990 nonsynonymous SNV 0.410 2 22 hm5C_associated_SNPs_113483 0 0 1 1 85188972 85188997 mRNA hsa-miR-505 WDR73 miRanda miRanda
8903 chr20 2635458 2635458 1 + A G LIHC 2635455 + 2635435 2635475 41 CGATCTGTCAGCTTGTAAAGCACAGCTGGGGCTGGGACACA CGATCTGTCAGCTTGTAAAGCACGGCTGGGGCTGGGACACA < 41bp 0.520559884667859 0.75447333081162 0.13733506 0.2964983 prediction 0.467826892287521 Functional Gain - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635455 chr20:2635458 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_113511 0 0 1 1 2635439 2635459 mRNA hsa-miR-218 NOP56 miRanda miRanda
8904 chr8 11219308 11219308 1 + A G rs2572373 11219305 + 11219285 11219325 41 TGTCCAAGGTCCACGCGGAGCTCATGGGAGAAGTAAGCATC TGTCCAAGGTCCACGCGGAGCTCGTGGGAGAAGTAAGCATC < 41bp 0.508900290774551 0.742708579785635 0.3881209 0.34787267 prediction 0.467616578022168 Functional Gain - TDH ENSG00000154316 ncRNA_exonic Human transcribed_unitary_pseudogene chr8:11219305 chr8:11219308 . . 0 24 hm5C_associated_SNPs_113562 0 0 0 2 11219306 11219316 mRNA hsa-miR-217 TDH miRanda miRanda
8905 chr8 11219308 11219308 1 + A G rs2572373 11219305 + 11219285 11219325 41 TGTCCAAGGTCCACGCGGAGCTCATGGGAGAAGTAAGCATC TGTCCAAGGTCCACGCGGAGCTCGTGGGAGAAGTAAGCATC < 41bp 0.508900290774551 0.742708579785635 0.3881209 0.34787267 prediction 0.467616578022168 Functional Gain - TDH ENSG00000154316 ncRNA_exonic Human transcribed_unitary_pseudogene chr8:11219305 chr8:11219308 . . 0 24 hm5C_associated_SNPs_113562 0 0 0 2 11219304 11219316 mRNA hsa-miR-153 TDH miRanda miRanda
8906 chrX 74520748 74520748 1 + T C UCEC 74520746 + 74520726 74520766 41 CTGTAAAGGTTCTTATAGAACATGGAGTTCAACCCAGTGTT CTGTAAAGGTTCTTATAGAACACGGAGTTCAACCCAGTGTT < 41bp 0.577487326196666 0.811194678222694 0.3082065 0.33238184 prediction 0.467414704052057 Functional Gain - UPRT ENSG00000094841 CDS Human protein_coding chrX:74520746 chrX:74520748 synonymous SNV . 0 23 hm5C_associated_SNPs_113596 0 0 1 4 74520746 74520767 mRNA hsa-miR-141 UPRT miRanda miRanda
8907 chrX 74520748 74520748 1 + T C UCEC 74520746 + 74520726 74520766 41 CTGTAAAGGTTCTTATAGAACATGGAGTTCAACCCAGTGTT CTGTAAAGGTTCTTATAGAACACGGAGTTCAACCCAGTGTT < 41bp 0.577487326196666 0.811194678222694 0.3082065 0.33238184 prediction 0.467414704052057 Functional Gain - UPRT ENSG00000094841 CDS Human protein_coding chrX:74520746 chrX:74520748 synonymous SNV . 0 23 hm5C_associated_SNPs_113596 0 0 1 4 74520730 74520752 mRNA hsa-miR-145 UPRT miRanda miRanda
8908 chrX 74520748 74520748 1 + T C UCEC 74520746 + 74520726 74520766 41 CTGTAAAGGTTCTTATAGAACATGGAGTTCAACCCAGTGTT CTGTAAAGGTTCTTATAGAACACGGAGTTCAACCCAGTGTT < 41bp 0.577487326196666 0.811194678222694 0.3082065 0.33238184 prediction 0.467414704052057 Functional Gain - UPRT ENSG00000094841 CDS Human protein_coding chrX:74520746 chrX:74520748 synonymous SNV . 0 23 hm5C_associated_SNPs_113596 0 0 1 4 74520747 74520767 mRNA hsa-miR-200a UPRT miRanda miRanda
8909 chrX 74520748 74520748 1 + T C UCEC 74520746 + 74520726 74520766 41 CTGTAAAGGTTCTTATAGAACATGGAGTTCAACCCAGTGTT CTGTAAAGGTTCTTATAGAACACGGAGTTCAACCCAGTGTT < 41bp 0.577487326196666 0.811194678222694 0.3082065 0.33238184 prediction 0.467414704052057 Functional Gain - UPRT ENSG00000094841 CDS Human protein_coding chrX:74520746 chrX:74520748 synonymous SNV . 0 23 hm5C_associated_SNPs_113596 0 0 1 4 74520743 74520767 mRNA hsa-miR-490-3p UPRT miRanda miRanda
8910 chr2 189859022 189859022 1 + C G rs41272837 189859018 + 189858998 189859038 41 AGCCCGGGGTCCTCCAGGACCAGCCGGTGCTAATGGTGCTC AGCCCGGGGTCCTCCAGGACCAGCGGGTGCTAATGGTGCTC < 41bp 0.432467182711871 0.733670052122746 0.89857566 0.89930725 prediction 0.467340104245492 Functional Gain - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189859018 chr2:189859022 synonymous SNV . 0 25 hm5C_associated_SNPs_113606 0 0 0 3 189859018 189859038 mRNA hsa-miR-29a COL3A1 miRanda miRanda
8911 chr2 189859022 189859022 1 + C G rs41272837 189859018 + 189858998 189859038 41 AGCCCGGGGTCCTCCAGGACCAGCCGGTGCTAATGGTGCTC AGCCCGGGGTCCTCCAGGACCAGCGGGTGCTAATGGTGCTC < 41bp 0.432467182711871 0.733670052122746 0.89857566 0.89930725 prediction 0.467340104245492 Functional Gain - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189859018 chr2:189859022 synonymous SNV . 0 25 hm5C_associated_SNPs_113606 0 0 0 3 189859016 189859038 mRNA hsa-miR-29b COL3A1 miRanda miRanda
8912 chr2 189859022 189859022 1 + C G rs41272837 189859018 + 189858998 189859038 41 AGCCCGGGGTCCTCCAGGACCAGCCGGTGCTAATGGTGCTC AGCCCGGGGTCCTCCAGGACCAGCGGGTGCTAATGGTGCTC < 41bp 0.432467182711871 0.733670052122746 0.89857566 0.89930725 prediction 0.467340104245492 Functional Gain - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189859018 chr2:189859022 synonymous SNV . 0 25 hm5C_associated_SNPs_113606 0 0 0 3 189859018 189859038 mRNA hsa-miR-29c COL3A1 miRanda miRanda
8913 chr18 21739821 21739821 1 + C T LUAD 21739820 + 21739800 21739840 41 TGAGAAATACCAGAAACATACCCTAAGTCCCCAGAATGCTA TGAGAAATACCAGAAACATACTCTAAGTCCCCAGAATGCTA < 41bp 0.52271680195524 0.756037064639667 0.28765595 0.93239003 prediction 0.466640525368854 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739820 chr18:21739821 synonymous SNV . 0 22 hm5C_associated_SNPs_113764 0 0 1 1 21739813 21739834 mRNA hsa-miR-491-5p CABYR miRanda miRanda
8914 chr3 52812491 52812491 1 + C T SKCM 52812490 + 52812470 52812510 41 GTGGCCTTCGACCTGGAAATCCCCAAGACAGCATTCATCAG GTGGCCTTCGACCTGGAAATCTCCAAGACAGCATTCATCAG < 41bp 0.590718374998026 0.823922598902814 0.22182775 0.97088265 prediction 0.466408447809574 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52812490 chr3:52812491 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_113809 0 0 0 1 52812468 52812492 mRNA hsa-miR-876-5p ITIH1 miRanda miRanda
8915 chr14 75359558 75359558 1 + C T SKCM 75359557 + 75359537 75359577 41 CTGCTCCTGCTAAGGCCAAGCCGGCTGAAGCTCCTGCTGCT CTGCTCCTGCTAAGGCCAAGCTGGCTGAAGCTCCTGCTGCT < 41bp 0.489838300663151 0.733085744107968 0.8801733 0.7530316 prediction 0.466171488215935 Functional Gain - DLST ENSG00000119689 CDS Human protein_coding chr14:75359557 chr14:75359558 nonsynonymous SNV 0.971 2 22 hm5C_associated_SNPs_113860 0 0 1 3 75359552 75359572 mRNA hsa-miR-28-5p DLST miRanda miRanda
8916 chr14 75359558 75359558 1 + C T SKCM 75359557 + 75359537 75359577 41 CTGCTCCTGCTAAGGCCAAGCCGGCTGAAGCTCCTGCTGCT CTGCTCCTGCTAAGGCCAAGCTGGCTGAAGCTCCTGCTGCT < 41bp 0.489838300663151 0.733085744107968 0.8801733 0.7530316 prediction 0.466171488215935 Functional Gain - DLST ENSG00000119689 CDS Human protein_coding chr14:75359557 chr14:75359558 nonsynonymous SNV 0.971 2 22 hm5C_associated_SNPs_113860 0 0 1 3 75359553 75359576 mRNA hsa-miR-214 DLST miRanda miRanda
8917 chr14 75359558 75359558 1 + C T SKCM 75359557 + 75359537 75359577 41 CTGCTCCTGCTAAGGCCAAGCCGGCTGAAGCTCCTGCTGCT CTGCTCCTGCTAAGGCCAAGCTGGCTGAAGCTCCTGCTGCT < 41bp 0.489838300663151 0.733085744107968 0.8801733 0.7530316 prediction 0.466171488215935 Functional Gain - DLST ENSG00000119689 CDS Human protein_coding chr14:75359557 chr14:75359558 nonsynonymous SNV 0.971 2 22 hm5C_associated_SNPs_113860 0 0 1 3 75359552 75359572 mRNA hsa-miR-708 DLST miRanda miRanda
8918 chr7 420458 420458 1 + T A rs144026034 420454 + 420434 420474 41 AAACTGATCCCCAGCAAAGCCTCCTGCTGAGTGACGTCTTC AAACTGATCCCCAGCAAAGCCTCCAGCTGAGTGACGTCTTC < 41bp 0.414356853634296 0.73305706659682 0.090186894 0.9307953 prediction 0.466114133193641 Functional Gain - LOC442497 ENSG00000249574 ncRNA_exonic Human lincRNA chr7:420454 chr7:420458 . . 0 25 hm5C_associated_SNPs_113874 0 0 0 1 420442 420463 mRNA hsa-miR-214 LOC442497 miRanda miRanda
8919 chr16 57088685 57088685 1 + C T LAML 57088684 + 57088664 57088704 41 CTGAGCCAGACGGGACTGTCCCCGAAAAGCCCCTTCCTGCT CTGAGCCAGACGGGACTGTCCTCGAAAAGCCCCTTCCTGCT < 41bp 0.551910244647279 0.784947233418614 0.04842958 0.8150815 prediction 0.466073977542671 Functional Gain - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57088684 chr16:57088685 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_113887 0 0 0 1 57088685 57088706 mRNA hsa-miR-214 NLRC5 miRanda miRanda
8920 chr19 49843549 49843549 1 - G T SKCM 49843550 - 49843530 49843570 41 GAGCCGGTTGTAGACGTGGTCCAGGTTTCTGCACAGGAATA GAGCCGGTTGTAGACGTGGTCAAGGTTTCTGCACAGGAATA < 41bp 0.482861976605133 0.732863103116927 0.22708875 0.41183567 prediction 0.465726206233855 Functional Gain - CD37 ENSG00000104894 CDS Human protein_coding chr19:49843550 chr19:49843549 synonymous SNV . 0 22 hm5C_associated_SNPs_113976 0 0 1 2 49843545 49843560 lncRNA hsa-miR-3690 AC011450.1 miRanda starBase2
8921 chr19 49843549 49843549 1 - G T SKCM 49843550 - 49843530 49843570 41 GAGCCGGTTGTAGACGTGGTCCAGGTTTCTGCACAGGAATA GAGCCGGTTGTAGACGTGGTCAAGGTTTCTGCACAGGAATA < 41bp 0.482861976605133 0.732863103116927 0.22708875 0.41183567 prediction 0.465726206233855 Functional Gain - CD37 ENSG00000104894 CDS Human protein_coding chr19:49843550 chr19:49843549 synonymous SNV . 0 22 hm5C_associated_SNPs_113976 0 0 1 2 49843543 49843560 lncRNA hsa-miR-490-3p AC011450.1 miRanda starBase2
8922 chr12 51453367 51453367 1 + T C rs111662542 51453365 + 51453345 51453385 41 GGGCTTCACAGCATGGCACACATGTGGGAACTGCAGACATT GGGCTTCACAGCATGGCACACACGTGGGAACTGCAGACATT < 41bp 0.497982670368651 0.732184542812231 0.24629593 0.17654958 prediction 0.464369085624462 Functional Gain - LETMD1 ENSG00000050426 UTR3 Human protein_coding chr12:51453365 chr12:51453367 . . 0 23 hm5C_associated_SNPs_114266 0 0 1 1 51453366 51453388 mRNA hsa-miR-613 LETMD1 miRanda miRanda
8923 chr6 31170514 31170514 1 + A G rs9263870 31170511 + 31170491 31170531 41 GGGCCCCTCCTTCCTCCCTCCTCAATGGAAATGCTGGAGAT GGGCCCCTCCTTCCTCCCTCCTCGATGGAAATGCTGGAGAT < 41bp 0.490942822221356 0.732119372746323 0.49563658 0.9030592 prediction 0.464238745492645 Functional Gain - HCG27 ENSG00000206344 CDS Human lincRNA chr6:31170511 chr6:31170514 unknown . 0 24 hm5C_associated_SNPs_114300 0 0 0 1 31170504 31170528 mRNA hsa-miR-338-3p HCG27 miRanda miRanda
8924 chr2 183621144 183621144 1 + C T UCEC 183621143 + 183621123 183621163 41 GGATGGTTGATTTCTATTCTCCGTGGTGTCATCCTTGCCAA GGATGGTTGATTTCTATTCTCTGTGGTGTCATCCTTGCCAA < 41bp 0.505329309366972 0.737402207166636 0.12663928 0.13771394 prediction 0.464145795599328 Functional Gain - DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183621143 chr2:183621144 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_114325 0 0 1 3 183621141 183621162 mRNA hsa-miR-31 DNAJC10 miRanda miRanda
8925 chr2 183621144 183621144 1 + C T UCEC 183621143 + 183621123 183621163 41 GGATGGTTGATTTCTATTCTCCGTGGTGTCATCCTTGCCAA GGATGGTTGATTTCTATTCTCTGTGGTGTCATCCTTGCCAA < 41bp 0.505329309366972 0.737402207166636 0.12663928 0.13771394 prediction 0.464145795599328 Functional Gain - DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183621143 chr2:183621144 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_114325 0 0 1 3 183621142 183621164 mRNA hsa-miR-182 DNAJC10 miRanda miRanda
8926 chr2 183621144 183621144 1 + C T UCEC 183621143 + 183621123 183621163 41 GGATGGTTGATTTCTATTCTCCGTGGTGTCATCCTTGCCAA GGATGGTTGATTTCTATTCTCTGTGGTGTCATCCTTGCCAA < 41bp 0.505329309366972 0.737402207166636 0.12663928 0.13771394 prediction 0.464145795599328 Functional Gain - DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183621143 chr2:183621144 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_114325 0 0 1 3 183621133 183621155 mRNA hsa-miR-425 DNAJC10 miRanda miRanda
8927 chr20 2843995 2843995 1 + C A LIHC 2843994 + 2843974 2844014 41 TATGCGAGTACTTGCGCCTTCCTGAAGTACAGGGCGTCAGC TATGCGAGTACTTGCGCCTTCATGAAGTACAGGGCGTCAGC < 41bp 0.474205897695676 0.731964578068806 0.6189493 0.58913213 prediction 0.463929156137611 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843994 chr20:2843995 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_114379 0 0 1 1 2843986 2844007 mRNA hsa-miR-486-5p VPS16 miRanda miRanda
8928 chr16 29690494 29690494 1 + C A LUAD 29690490 + 29690470 29690510 41 CCTTGGTCCTGAGCAGCCAACACACCAGCCCAGACAGCTGC CCTTGGTCCTGAGCAGCCAACACAACAGCCCAGACAGCTGC < 41bp 0.397154257255016 0.731940673725844 0.12409592 0.15530363 prediction 0.463881347451689 Functional Gain - QPRT ENSG00000103485 UTR5 Human protein_coding chr16:29690490 chr16:29690494 . . 0 25 hm5C_associated_SNPs_114389 0 0 1 1 29690474 29690499 mRNA hsa-miR-138 QPRT miRanda miRanda
8929 chr19 3209483 3209483 1 + T G rs4594 3209481 + 3209461 3209501 41 TTCCTTCCTGGACAGGTCGTCATGATGGATGCACTGACTGA TTCCTTCCTGGACAGGTCGTCAGGATGGATGCACTGACTGA < 41bp 0.469130046625925 0.731919701847092 0.40069497 0.86310387 prediction 0.463839403694184 Functional Gain - NCLN ENSG00000125912 UTR3 Human protein_coding chr19:3209481 chr19:3209483 . . 0 23 hm5C_associated_SNPs_114402 0 0 1 5 3209474 3209497 mRNA hsa-miR-148a NCLN miRanda miRanda
8930 chr19 3209483 3209483 1 + T G rs4594 3209481 + 3209461 3209501 41 TTCCTTCCTGGACAGGTCGTCATGATGGATGCACTGACTGA TTCCTTCCTGGACAGGTCGTCAGGATGGATGCACTGACTGA < 41bp 0.469130046625925 0.731919701847092 0.40069497 0.86310387 prediction 0.463839403694184 Functional Gain - NCLN ENSG00000125912 UTR3 Human protein_coding chr19:3209481 chr19:3209483 . . 0 23 hm5C_associated_SNPs_114402 0 0 1 5 3209476 3209497 mRNA hsa-miR-148a NCLN miRanda miRanda
8931 chr19 3209483 3209483 1 + T G rs4594 3209481 + 3209461 3209501 41 TTCCTTCCTGGACAGGTCGTCATGATGGATGCACTGACTGA TTCCTTCCTGGACAGGTCGTCAGGATGGATGCACTGACTGA < 41bp 0.469130046625925 0.731919701847092 0.40069497 0.86310387 prediction 0.463839403694184 Functional Gain - NCLN ENSG00000125912 UTR3 Human protein_coding chr19:3209481 chr19:3209483 . . 0 23 hm5C_associated_SNPs_114402 0 0 1 5 3209477 3209497 mRNA hsa-miR-152 NCLN miRanda miRanda
8932 chr19 3209483 3209483 1 + T G rs4594 3209481 + 3209461 3209501 41 TTCCTTCCTGGACAGGTCGTCATGATGGATGCACTGACTGA TTCCTTCCTGGACAGGTCGTCAGGATGGATGCACTGACTGA < 41bp 0.469130046625925 0.731919701847092 0.40069497 0.86310387 prediction 0.463839403694184 Functional Gain - NCLN ENSG00000125912 UTR3 Human protein_coding chr19:3209481 chr19:3209483 . . 0 23 hm5C_associated_SNPs_114402 0 0 1 5 3209474 3209497 mRNA hsa-miR-148b NCLN miRanda miRanda
8933 chr19 3209483 3209483 1 + T G rs4594 3209481 + 3209461 3209501 41 TTCCTTCCTGGACAGGTCGTCATGATGGATGCACTGACTGA TTCCTTCCTGGACAGGTCGTCAGGATGGATGCACTGACTGA < 41bp 0.469130046625925 0.731919701847092 0.40069497 0.86310387 prediction 0.463839403694184 Functional Gain - NCLN ENSG00000125912 UTR3 Human protein_coding chr19:3209481 chr19:3209483 . . 0 23 hm5C_associated_SNPs_114402 0 0 1 5 3209476 3209497 mRNA hsa-miR-148b NCLN miRanda miRanda
8934 chr2 219619165 219619165 1 + C G rs193071168 219619161 + 219619141 219619181 41 GGAGCATGGGCATCAGCTACCTCACGGGAACCAGCCTGCTG GGAGCATGGGCATCAGCTACCTCAGGGGAACCAGCCTGCTG < 41bp 0.437354192428162 0.731855234756268 0.1083343 0.16728574 prediction 0.463710469512537 Functional Gain - TTLL4 ENSG00000135912 UTR3 Human protein_coding chr2:219619161 chr2:219619165 . . 0 25 hm5C_associated_SNPs_114436 0 0 1 1 219619161 219619182 mRNA hsa-miR-214 TTLL4 miRanda miRanda
8935 chr1 16786168 16786168 1 + C A rs279023 16786164 + 16786144 16786184 41 CCAAGGCGGGTGCTGGAAGCCAGACGGAACAGTGTTGGGGC CCAAGGCGGGTGCTGGAAGCCAGAAGGAACAGTGTTGGGGC < 41bp 0.670751418848235 0.902588832428163 0.48338118 0.532425 prediction 0.463674827159855 Functional Gain - NECAP2 ENSG00000157191 UTR3 Human protein_coding chr1:16786164 chr1:16786168 . . 0 25 hm5C_associated_SNPs_114445 0 0 1 2 16786159 16786180 mRNA hsa-miR-141 NECAP2 miRanda miRanda
8936 chr1 16786168 16786168 1 + C A rs279023 16786164 + 16786144 16786184 41 CCAAGGCGGGTGCTGGAAGCCAGACGGAACAGTGTTGGGGC CCAAGGCGGGTGCTGGAAGCCAGAAGGAACAGTGTTGGGGC < 41bp 0.670751418848235 0.902588832428163 0.48338118 0.532425 prediction 0.463674827159855 Functional Gain - NECAP2 ENSG00000157191 UTR3 Human protein_coding chr1:16786164 chr1:16786168 . . 0 25 hm5C_associated_SNPs_114445 0 0 1 2 16786159 16786180 mRNA hsa-miR-200a NECAP2 miRanda miRanda
8937 chr1 205561289 205561289 1 + C A UCEC 205561288 + 205561268 205561308 41 GTTGGCGTGGTGGTGACGTTCCTGGTGCTGCTTATTTTCTC GTTGGCGTGGTGGTGACGTTCATGGTGCTGCTTATTTTCTC < 41bp 0.569323680833726 0.801113405551316 0.069316834 0.24152389 prediction 0.463579449435179 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561288 chr1:205561289 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_114458 0 0 0 10 205561279 205561300 mRNA hsa-miR-15a MFSD4 miRanda miRanda
8938 chr1 205561289 205561289 1 + C A UCEC 205561288 + 205561268 205561308 41 GTTGGCGTGGTGGTGACGTTCCTGGTGCTGCTTATTTTCTC GTTGGCGTGGTGGTGACGTTCATGGTGCTGCTTATTTTCTC < 41bp 0.569323680833726 0.801113405551316 0.069316834 0.24152389 prediction 0.463579449435179 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561288 chr1:205561289 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_114458 0 0 0 10 205561278 205561300 mRNA hsa-miR-16 MFSD4 miRanda miRanda
8939 chr1 205561289 205561289 1 + C A UCEC 205561288 + 205561268 205561308 41 GTTGGCGTGGTGGTGACGTTCCTGGTGCTGCTTATTTTCTC GTTGGCGTGGTGGTGACGTTCATGGTGCTGCTTATTTTCTC < 41bp 0.569323680833726 0.801113405551316 0.069316834 0.24152389 prediction 0.463579449435179 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561288 chr1:205561289 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_114458 0 0 0 10 205561276 205561297 mRNA hsa-miR-29a MFSD4 miRanda miRanda
8940 chr1 205561289 205561289 1 + C A UCEC 205561288 + 205561268 205561308 41 GTTGGCGTGGTGGTGACGTTCCTGGTGCTGCTTATTTTCTC GTTGGCGTGGTGGTGACGTTCATGGTGCTGCTTATTTTCTC < 41bp 0.569323680833726 0.801113405551316 0.069316834 0.24152389 prediction 0.463579449435179 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561288 chr1:205561289 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_114458 0 0 0 10 205561276 205561297 mRNA hsa-miR-29b MFSD4 miRanda miRanda
8941 chr1 205561289 205561289 1 + C A UCEC 205561288 + 205561268 205561308 41 GTTGGCGTGGTGGTGACGTTCCTGGTGCTGCTTATTTTCTC GTTGGCGTGGTGGTGACGTTCATGGTGCTGCTTATTTTCTC < 41bp 0.569323680833726 0.801113405551316 0.069316834 0.24152389 prediction 0.463579449435179 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561288 chr1:205561289 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_114458 0 0 0 10 205561279 205561300 mRNA hsa-miR-15b MFSD4 miRanda miRanda
8942 chr1 205561289 205561289 1 + C A UCEC 205561288 + 205561268 205561308 41 GTTGGCGTGGTGGTGACGTTCCTGGTGCTGCTTATTTTCTC GTTGGCGTGGTGGTGACGTTCATGGTGCTGCTTATTTTCTC < 41bp 0.569323680833726 0.801113405551316 0.069316834 0.24152389 prediction 0.463579449435179 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561288 chr1:205561289 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_114458 0 0 0 10 205561279 205561300 mRNA hsa-miR-195 MFSD4 miRanda miRanda
8943 chr1 205561289 205561289 1 + C A UCEC 205561288 + 205561268 205561308 41 GTTGGCGTGGTGGTGACGTTCCTGGTGCTGCTTATTTTCTC GTTGGCGTGGTGGTGACGTTCATGGTGCTGCTTATTTTCTC < 41bp 0.569323680833726 0.801113405551316 0.069316834 0.24152389 prediction 0.463579449435179 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561288 chr1:205561289 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_114458 0 0 0 10 205561276 205561297 mRNA hsa-miR-29c MFSD4 miRanda miRanda
8944 chr1 205561289 205561289 1 + C A UCEC 205561288 + 205561268 205561308 41 GTTGGCGTGGTGGTGACGTTCCTGGTGCTGCTTATTTTCTC GTTGGCGTGGTGGTGACGTTCATGGTGCTGCTTATTTTCTC < 41bp 0.569323680833726 0.801113405551316 0.069316834 0.24152389 prediction 0.463579449435179 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561288 chr1:205561289 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_114458 0 0 0 10 205561279 205561300 mRNA hsa-miR-424 MFSD4 miRanda miRanda
8945 chr1 205561289 205561289 1 + C A UCEC 205561288 + 205561268 205561308 41 GTTGGCGTGGTGGTGACGTTCCTGGTGCTGCTTATTTTCTC GTTGGCGTGGTGGTGACGTTCATGGTGCTGCTTATTTTCTC < 41bp 0.569323680833726 0.801113405551316 0.069316834 0.24152389 prediction 0.463579449435179 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561288 chr1:205561289 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_114458 0 0 0 10 205561280 205561300 mRNA hsa-miR-497 MFSD4 miRanda miRanda
8946 chr1 205561289 205561289 1 + C A UCEC 205561288 + 205561268 205561308 41 GTTGGCGTGGTGGTGACGTTCCTGGTGCTGCTTATTTTCTC GTTGGCGTGGTGGTGACGTTCATGGTGCTGCTTATTTTCTC < 41bp 0.569323680833726 0.801113405551316 0.069316834 0.24152389 prediction 0.463579449435179 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561288 chr1:205561289 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_114458 0 0 0 10 205561272 205561292 mRNA hsa-miR-873 MFSD4 miRanda miRanda
8947 chr10 133981983 133981983 1 + T C rs2814172 133981981 + 133981961 133982001 41 CCTGGGAGGGCTCCCCGACGCCTCAGGGGCCCCTCCGATGC CCTGGGAGGGCTCCCCGACGCCCCAGGGGCCCCTCCGATGC < 41bp 0.510091572358528 0.741851442448199 0.08769408 0.37567204 prediction 0.46351974017934 Functional Gain - JAKMIP3 ENSG00000188385 UTR3 Human protein_coding chr10:133981981 chr10:133981983 . . 0 23 hm5C_associated_SNPs_114470 0 0 0 2 133981983 133982005 mRNA hsa-miR-103 JAKMIP3 miRanda miRanda
8948 chr10 133981983 133981983 1 + T C rs2814172 133981981 + 133981961 133982001 41 CCTGGGAGGGCTCCCCGACGCCTCAGGGGCCCCTCCGATGC CCTGGGAGGGCTCCCCGACGCCCCAGGGGCCCCTCCGATGC < 41bp 0.510091572358528 0.741851442448199 0.08769408 0.37567204 prediction 0.46351974017934 Functional Gain - JAKMIP3 ENSG00000188385 UTR3 Human protein_coding chr10:133981981 chr10:133981983 . . 0 23 hm5C_associated_SNPs_114470 0 0 0 2 133981983 133982005 mRNA hsa-miR-107 JAKMIP3 miRanda miRanda
8949 chr11 71260243 71260243 1 + T A rs2664 71260239 + 71260219 71260259 41 TAGTGGGAAACCTCAGGTAGCTCCTGAAGATCTGTGCTTTC TAGTGGGAAACCTCAGGTAGCTCCAGAAGATCTGTGCTTTC < 41bp 0.425592892971695 0.731658731087634 0.3516083 0.92697144 prediction 0.463317462175269 Functional Gain - KRTAP5-9 ENSG00000254997 UTR3 Human protein_coding chr11:71260239 chr11:71260243 . . 0 25 hm5C_associated_SNPs_114505 0 0 0 2 71260223 71260244 mRNA hsa-miR-28-5p KRTAP5-9 miRanda miRanda
8950 chr11 71260243 71260243 1 + T A rs2664 71260239 + 71260219 71260259 41 TAGTGGGAAACCTCAGGTAGCTCCTGAAGATCTGTGCTTTC TAGTGGGAAACCTCAGGTAGCTCCAGAAGATCTGTGCTTTC < 41bp 0.425592892971695 0.731658731087634 0.3516083 0.92697144 prediction 0.463317462175269 Functional Gain - KRTAP5-9 ENSG00000254997 UTR3 Human protein_coding chr11:71260239 chr11:71260243 . . 0 25 hm5C_associated_SNPs_114505 0 0 0 2 71260223 71260244 mRNA hsa-miR-708 KRTAP5-9 miRanda miRanda
8951 chr21 43522302 43522302 1 - A C UCEC 43522304 - 43522284 43522324 41 GTCAGGTTGTGGTTTACAATCTTTATTGTGACTTCAAATAC GTCAGGTTGTGGTTTACAATCTGTATTGTGACTTCAAATAC < 41bp 0.549356144729295 0.780992682763988 0.047553092 0.06740847 prediction 0.463273076069385 Functional Gain - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43522304 chr21:43522302 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_114517 0 0 0 1 43522290 43522312 mRNA hsa-miR-224 C21orf128 miRanda miRanda
8952 chr12 57920532 57920532 1 + C T LUAD 57920531 + 57920511 57920551 41 CACTGAGTGGAGCTGGCTTCCCTGGGATGCTTGGGGCCTTG CACTGAGTGGAGCTGGCTTCCTTGGGATGCTTGGGGCCTTG < 41bp 0.525996230992604 0.757617231934476 0.8476467 0.729026 prediction 0.463242001883744 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57920531 chr12:57920532 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_114525 0 0 1 1 57920521 57920541 mRNA hsa-miR-324-5p MBD6 miRanda miRanda
8953 chr1 154951243 154951243 1 + C T UCEC 154951242 + 154951222 154951262 41 GGCGCCCACTACCCAAGAAACCAAAGAAATGAAGCTGGCAA GGCGCCCACTACCCAAGAAACTAAAGAAATGAAGCTGGCAA < 41bp 0.488297655277615 0.731592209031612 0.38600412 0.36467674 prediction 0.463184418063225 Functional Gain - CKS1B ENSG00000173207 CDS Human protein_coding chr1:154951242 chr1:154951243 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_114540 0 0 0 1 154951228 154951248 mRNA hsa-miR-9 CKS1B miRanda miRanda
8954 chr21 47660787 47660787 1 + A G LIHC 47660784 + 47660764 47660804 41 AAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCGCAT AAACACTGCGCCAAGAGCTCCTCGGCAGAAGCTCCTCGCAT < 41bp 0.540484176723374 0.77200241701779 0.055668473 0.0616875 prediction 0.463036480588832 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660784 chr21:47660787 synonymous SNV . 0 24 hm5C_associated_SNPs_114575 0 0 1 2 47660779 47660800 mRNA hsa-miR-28-5p MCM3APAS miRanda miRanda
8955 chr21 47660787 47660787 1 + A G LIHC 47660784 + 47660764 47660804 41 AAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCGCAT AAACACTGCGCCAAGAGCTCCTCGGCAGAAGCTCCTCGCAT < 41bp 0.540484176723374 0.77200241701779 0.055668473 0.0616875 prediction 0.463036480588832 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660784 chr21:47660787 synonymous SNV . 0 24 hm5C_associated_SNPs_114575 0 0 1 2 47660778 47660800 mRNA hsa-miR-708 MCM3APAS miRanda miRanda
8956 chr5 128448845 128448845 1 + C A rs181375321 128448841 + 128448821 128448861 41 CGCCTCCTAGTGAAACTTAACCAGCTAGACCATTTGAGTAC CGCCTCCTAGTGAAACTTAACCAGATAGACCATTTGAGTAC < 41bp 0.34721598747315 0.731450125180951 0.15274772 0.3355499 prediction 0.462900250361902 Functional Gain - ISOC1 ENSG00000066583 UTR3 Human protein_coding chr5:128448841 chr5:128448845 . . 0 25 hm5C_associated_SNPs_114608 0 0 1 1 128448845 128448866 mRNA hsa-miR-138 ISOC1 miRanda miRanda
8957 chr15 65856658 65856658 1 + C T SKCM 65856657 + 65856637 65856677 41 CAATTGGAGTCACTACGTCACCGGTGCTGCCTTCTCTGATC CAATTGGAGTCACTACGTCACTGGTGCTGCCTTCTCTGATC < 41bp 0.523653878770662 0.755083986424351 0.104685575 0.31571063 prediction 0.462860215307378 Functional Gain - HACD3 ENSG00000074696 CDS Human protein_coding chr15:65856657 chr15:65856658 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_114615 0 0 1 2 65856649 65856670 mRNA hsa-miR-124 PTPLAD1 miRanda miRanda
8958 chr15 65856658 65856658 1 + C T SKCM 65856657 + 65856637 65856677 41 CAATTGGAGTCACTACGTCACCGGTGCTGCCTTCTCTGATC CAATTGGAGTCACTACGTCACTGGTGCTGCCTTCTCTGATC < 41bp 0.523653878770662 0.755083986424351 0.104685575 0.31571063 prediction 0.462860215307378 Functional Gain - HACD3 ENSG00000074696 CDS Human protein_coding chr15:65856657 chr15:65856658 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_114615 0 0 1 2 65856655 65856678 mRNA hsa-miR-383 PTPLAD1 miRanda miRanda
8959 chr6 119229116 119229116 1 + C G rs565738786 119229112 + 119229092 119229132 41 GTAAAGATGTCTTGGCCTCCCAGACAGTCTTTGGACCACTA GTAAAGATGTCTTGGCCTCCCAGAGAGTCTTTGGACCACTA < 41bp 0.452276849927435 0.731412259256374 0.11038372 0.33067316 prediction 0.462824518512749 Functional Gain - ASF1A ENSG00000111875 UTR3 Human protein_coding chr6:119229112 chr6:119229116 . . 0 25 hm5C_associated_SNPs_114624 0 0 1 3 119229103 119229124 mRNA hsa-miR-320a ASF1A miRanda miRanda
8960 chr6 119229116 119229116 1 + C G rs565738786 119229112 + 119229092 119229132 41 GTAAAGATGTCTTGGCCTCCCAGACAGTCTTTGGACCACTA GTAAAGATGTCTTGGCCTCCCAGAGAGTCTTTGGACCACTA < 41bp 0.452276849927435 0.731412259256374 0.11038372 0.33067316 prediction 0.462824518512749 Functional Gain - ASF1A ENSG00000111875 UTR3 Human protein_coding chr6:119229112 chr6:119229116 . . 0 25 hm5C_associated_SNPs_114624 0 0 1 3 119229103 119229124 mRNA hsa-miR-320b ASF1A miRanda miRanda
8961 chr6 119229116 119229116 1 + C G rs565738786 119229112 + 119229092 119229132 41 GTAAAGATGTCTTGGCCTCCCAGACAGTCTTTGGACCACTA GTAAAGATGTCTTGGCCTCCCAGAGAGTCTTTGGACCACTA < 41bp 0.452276849927435 0.731412259256374 0.11038372 0.33067316 prediction 0.462824518512749 Functional Gain - ASF1A ENSG00000111875 UTR3 Human protein_coding chr6:119229112 chr6:119229116 . . 0 25 hm5C_associated_SNPs_114624 0 0 1 3 119229105 119229124 mRNA hsa-miR-320c ASF1A miRanda miRanda
8962 chr1 32697071 32697071 1 + C A rs1137947 32697070 + 32697050 32697090 41 TCATTGCACTCCATCCTGAGCCACAAGAGCAAAACTCCGTC TCATTGCACTCCATCCTGAGCAACAAGAGCAAAACTCCGTC < 41bp 0.521485260703572 0.752859099481976 0.2538724 0.20788941 prediction 0.462747677556809 Functional Gain - EIF3I ENSG00000084623 UTR3 Human protein_coding chr1:32697070 chr1:32697071 . . 0 22 hm5C_associated_SNPs_114639 0 0 1 1 32697051 32697072 mRNA hsa-miR-24 EIF3I miRanda miRanda
8963 chr1 182791305 182791305 1 + A G LUAD 182791302 + 182791282 182791322 41 AGATGTTGGAGGCTTTTGAACAAAAGGACTTCTCTTTAGCC AGATGTTGGAGGCTTTTGAACAAGAGGACTTCTCTTTAGCC < 41bp 0.507014503876371 0.738251036616791 0.33500803 0.8675862 prediction 0.46247306548084 Functional Gain - NPL ENSG00000135838 CDS Human protein_coding chr1:182791302 chr1:182791305 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_114691 0 0 0 1 182791284 182791305 mRNA hsa-miR-375 NPL miRanda miRanda
8964 chr15 99473511 99473511 1 + C T SKCM 99473510 + 99473490 99473530 41 TGCTGTATGCCTCTGTGAACCCGGAGTACTTCAGCGCTGCT TGCTGTATGCCTCTGTGAACCTGGAGTACTTCAGCGCTGCT < 41bp 0.55701333116509 0.788194700950887 0.89411974 0.86573213 prediction 0.462362739571594 Functional Gain - IGF1R ENSG00000140443 CDS Human protein_coding chr15:99473510 chr15:99473511 nonsynonymous SNV 0.983 5 22 hm5C_associated_SNPs_114722 0 0 1 1 99473508 99473531 mRNA hsa-miR-503 IGF1R miRanda miRanda
8965 chr10 75675024 75675024 1 + C T UCEC 75675023 + 75675003 75675043 41 ACCTAGCCGACTATCTCTATCCGGAGCAGCTGAAAATGACT ACCTAGCCGACTATCTCTATCTGGAGCAGCTGAAAATGACT < 41bp 0.479883011214919 0.731173911624846 0.92020917 0.554419 prediction 0.462347823249691 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75675023 chr10:75675024 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_114725 0 0 0 2 75675024 75675047 mRNA hsa-miR-212 PLAU miRanda miRanda
8966 chr10 75675024 75675024 1 + C T UCEC 75675023 + 75675003 75675043 41 ACCTAGCCGACTATCTCTATCCGGAGCAGCTGAAAATGACT ACCTAGCCGACTATCTCTATCTGGAGCAGCTGAAAATGACT < 41bp 0.479883011214919 0.731173911624846 0.92020917 0.554419 prediction 0.462347823249691 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75675023 chr10:75675024 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_114725 0 0 0 2 75675023 75675047 mRNA hsa-miR-132 PLAU miRanda miRanda
8967 chr1 158325684 158325684 1 + T C LUAD 158325682 + 158325662 158325702 41 GCCGTCTGCAGCTTGTGTGCCATGTCTCAGGATTCTACCCA GCCGTCTGCAGCTTGTGTGCCACGTCTCAGGATTCTACCCA < 41bp 0.504920874566582 0.735969039776036 0.031028152 0.014048427 prediction 0.462096330418909 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325682 chr1:158325684 synonymous SNV . 0 23 hm5C_associated_SNPs_114772 0 0 0 1 158325666 158325685 mRNA hsa-miR-183 CD1E miRanda miRanda
8968 chr4 128608907 128608907 1 + C A rs35354253 128608903 + 128608883 128608923 41 TGTTCTTTCAAAGAGCACTTCAGCCTGCGAAACTGCATTCC TGTTCTTTCAAAGAGCACTTCAGCATGCGAAACTGCATTCC < 41bp 0.309022650800266 0.730827129300271 0.24895746 0.23312208 prediction 0.461654258600542 Functional Gain - INTU ENSG00000164066 CDS Human protein_coding chr4:128608903 chr4:128608907 nonsynonymous SNV 0.677 4 25 hm5C_associated_SNPs_114863 0 0 0 1 128608896 128608910 mRNA hsa-miR-125a-3p INTU miRanda miRanda
8969 chrX 47088885 47088885 1 + C G rs376250984 47088881 + 47088861 47088901 41 GGCTATGGGAAAGCATGCCACAGCCACTCGCCTTCCTACCC GGCTATGGGAAAGCATGCCACAGCGACTCGCCTTCCTACCC < 41bp 0.61253955347465 0.843269204817789 0.13430804 0.21837181 prediction 0.461459302686277 Functional Gain - CDK16 ENSG00000102225 UTR3 Human protein_coding chrX:47088881 chrX:47088885 . . 0 25 hm5C_associated_SNPs_114909 0 0 1 1 47088869 47088893 mRNA hsa-miR-34a CDK16 miRanda miRanda
8970 chr11 66373037 66373037 1 + C T SKCM 66373036 + 66373016 66373056 41 CCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAACTCCG CCGGGGAGGCCATCCCTTATCTAAGATCACAGGGAACTCCG < 41bp 0.548481888268212 0.779181799407372 0.85749435 0.27265978 prediction 0.461399822278319 Functional Gain - CCS ENSG00000173992 CDS Human protein_coding chr11:66373036 chr11:66373037 synonymous SNV . 0 22 hm5C_associated_SNPs_114917 0 0 1 1 66373034 66373057 mRNA hsa-miR-127-3p CCS miRanda miRanda
8971 chr16 69200491 69200491 1 + A G rs16958676 69200488 + 69200468 69200508 41 CGAGGTGTCAGTGACATCAGCACAGGTGGTTTGTGTTGAGG CGAGGTGTCAGTGACATCAGCACGGGTGGTTTGTGTTGAGG < 41bp 0.505346973649245 0.73593064248298 0.4202174 0.6467823 prediction 0.461167337667469 Functional Gain - UTP4 ENSG00000141076 UTR3 Human protein_coding chr16:69200488 chr16:69200491 . . 0 24 hm5C_associated_SNPs_114962 0 0 1 1 69200486 69200507 mRNA hsa-miR-377 CIRH1A miRanda miRanda
8972 chr17 645219 645219 1 + C T rs142307298 645218 + 645198 645238 41 CAGTACCCGTGGCACTGGGCCCGCAGAAGCAAGGGATGACT CAGTACCCGTGGCACTGGGCCTGCAGAAGCAAGGGATGACT < 41bp 0.505305746632044 0.735854551933326 0.05386293 0.11600107 prediction 0.461097610602565 Functional Gain - FAM57A ENSG00000167695 UTR3 Human protein_coding chr17:645218 chr17:645219 . . 0 22 hm5C_associated_SNPs_114977 0 0 0 1 645219 645240 mRNA hsa-miR-224 FAM57A miRanda miRanda
8973 chr8 10555357 10555357 1 + C G OV 10555356 + 10555336 10555376 41 ATGGACAGGGACTTGTGGATCCACGAGCAGCAGGTGGCCAC ATGGACAGGGACTTGTGGATCGACGAGCAGCAGGTGGCCAC < 41bp 0.642232213196595 0.872574299347529 0.18025288 0.41622534 prediction 0.460684172301867 Functional Gain - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10555356 chr8:10555357 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_115071 0 0 0 1 10555348 10555370 mRNA hsa-miR-370 C8orf74 miRanda miRanda
8974 chr12 125550167 125550167 1 + C A UCEC 125550166 + 125550146 125550186 41 CGCCCCGGTCGGGAGGAGATCCTGGAGTGCCAGGTGATGTG CGCCCCGGTCGGGAGGAGATCATGGAGTGCCAGGTGATGTG < 41bp 0.472186222429264 0.730292050023021 0.4830699 0.5452586 prediction 0.460584100046042 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125550166 chr12:125550167 nonsynonymous SNV 0.931 0 22 hm5C_associated_SNPs_115084 0 0 1 3 125550161 125550186 mRNA hsa-miR-362-3p AACS miRanda miRanda
8975 chr12 125550167 125550167 1 + C A UCEC 125550166 + 125550146 125550186 41 CGCCCCGGTCGGGAGGAGATCCTGGAGTGCCAGGTGATGTG CGCCCCGGTCGGGAGGAGATCATGGAGTGCCAGGTGATGTG < 41bp 0.472186222429264 0.730292050023021 0.4830699 0.5452586 prediction 0.460584100046042 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125550166 chr12:125550167 nonsynonymous SNV 0.931 0 22 hm5C_associated_SNPs_115084 0 0 1 3 125550156 125550179 mRNA hsa-miR-422a AACS miRanda miRanda
8976 chr12 125550167 125550167 1 + C A UCEC 125550166 + 125550146 125550186 41 CGCCCCGGTCGGGAGGAGATCCTGGAGTGCCAGGTGATGTG CGCCCCGGTCGGGAGGAGATCATGGAGTGCCAGGTGATGTG < 41bp 0.472186222429264 0.730292050023021 0.4830699 0.5452586 prediction 0.460584100046042 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125550166 chr12:125550167 nonsynonymous SNV 0.931 0 22 hm5C_associated_SNPs_115084 0 0 1 3 125550164 125550186 mRNA hsa-miR-329 AACS miRanda miRanda
8977 chr4 37592556 37592556 1 - G A rs535638130 37592557 - 37592537 37592577 41 AGCTGCAAGGGCCTCCGCCACCGCTGCATCCTCGTCCACAA AGCTGCAAGGGCCTCCGCCACTGCTGCATCCTCGTCCACAA < 41bp 0.513844717334988 0.744104307648793 0.034619033 0.03674826 prediction 0.460519180627609 Functional Gain - C4orf19 ENSG00000154274 CDS Human protein_coding chr4:37592557 chr4:37592556 synonymous SNV . 0 22 hm5C_associated_SNPs_115099 0 0 0 1 37592556 37592579 mRNA hsa-miR-491-5p RELL1 miRanda miRanda
8978 chr9 36121578 36121578 1 + C T STAD 36121577 + 36121557 36121597 41 CTGGAAATACTTCAGAAAATCCGCATGCACGTGTCTGTCCC CTGGAAATACTTCAGAAAATCTGCATGCACGTGTCTGTCCC < 41bp 0.567407823354229 0.797559084985113 0.29622233 0.88654757 prediction 0.460302523261769 Functional Gain - RECK ENSG00000122707 CDS Human protein_coding chr9:36121577 chr9:36121578 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_115148 0 0 0 1 36121570 36121590 mRNA hsa-miR-152 RECK miRanda miRanda
8979 chr7 100321023 100321023 1 + C G rs78182250 100321022 + 100321002 100321042 41 CTTTAAACTCAGGGACAGAGCCATGCTGGGAAGACGCCTGA CTTTAAACTCAGGGACAGAGCGATGCTGGGAAGACGCCTGA < 41bp 0.443512857509043 0.730120693612391 0.20019478 0.25909182 prediction 0.460241387224783 Functional Gain - EPO ENSG00000130427 UTR3 Human protein_coding chr7:100321022 chr7:100321023 . . 0 22 hm5C_associated_SNPs_115163 0 0 0 1 100321008 100321031 mRNA hsa-miR-338-3p EPO miRanda miRanda
8980 chr7 86794313 86794313 1 + T G SKCM 86794310 + 86794290 86794330 41 AACAGTAGAAACTGTGAACTCTGTGACTTTGACTCAGGACA AACAGTAGAAACTGTGAACTCTGGGACTTTGACTCAGGACA < 41bp 0.40092813084279 0.730085553750376 0.16065148 0.322104 prediction 0.460171107500753 Functional Gain - DMTF1 ENSG00000135164 CDS Human protein_coding chr7:86794310 chr7:86794313 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_115175 0 0 1 1 86794301 86794319 mRNA hsa-miR-224 DMTF1 miRanda miRanda
8981 chr2 173420254 173420254 1 + T A rs3765065 173420250 + 173420230 173420270 41 GGGCCACACGTCCCAGTGTTCAGCTTTCGTATTTACGTACT GGGCCACACGTCCCAGTGTTCAGCATTCGTATTTACGTACT < 41bp 0.623159368213701 0.853224621114459 0.09360525 0.20688462 prediction 0.460130505801515 Functional Gain - PDK1 ENSG00000225205 ncRNA_exonic Human antisense chr2:173420250 chr2:173420254 . . 0 25 hm5C_associated_SNPs_115184 0 0 0 4 173420234 173420257 mRNA hsa-miR-320a PDK1 miRanda miRanda
8982 chr2 173420254 173420254 1 + T A rs3765065 173420250 + 173420230 173420270 41 GGGCCACACGTCCCAGTGTTCAGCTTTCGTATTTACGTACT GGGCCACACGTCCCAGTGTTCAGCATTCGTATTTACGTACT < 41bp 0.623159368213701 0.853224621114459 0.09360525 0.20688462 prediction 0.460130505801515 Functional Gain - PDK1 ENSG00000225205 ncRNA_exonic Human antisense chr2:173420250 chr2:173420254 . . 0 25 hm5C_associated_SNPs_115184 0 0 0 4 173420234 173420257 mRNA hsa-miR-320b PDK1 miRanda miRanda
8983 chr2 173420254 173420254 1 + T A rs3765065 173420250 + 173420230 173420270 41 GGGCCACACGTCCCAGTGTTCAGCTTTCGTATTTACGTACT GGGCCACACGTCCCAGTGTTCAGCATTCGTATTTACGTACT < 41bp 0.623159368213701 0.853224621114459 0.09360525 0.20688462 prediction 0.460130505801515 Functional Gain - PDK1 ENSG00000225205 ncRNA_exonic Human antisense chr2:173420250 chr2:173420254 . . 0 25 hm5C_associated_SNPs_115184 0 0 0 4 173420236 173420257 mRNA hsa-miR-320c PDK1 miRanda miRanda
8984 chr2 173420254 173420254 1 + T A rs3765065 173420250 + 173420230 173420270 41 GGGCCACACGTCCCAGTGTTCAGCTTTCGTATTTACGTACT GGGCCACACGTCCCAGTGTTCAGCATTCGTATTTACGTACT < 41bp 0.623159368213701 0.853224621114459 0.09360525 0.20688462 prediction 0.460130505801515 Functional Gain - PDK1 ENSG00000225205 ncRNA_exonic Human antisense chr2:173420250 chr2:173420254 . . 0 25 hm5C_associated_SNPs_115184 0 0 0 4 173420237 173420257 mRNA hsa-miR-320d PDK1 miRanda miRanda
8985 chr17 38327577 38327577 1 + A G rs73306851 38327574 + 38327554 38327594 41 GGGTGTGTATTCACATAGTCCTCAGGGCTCAGTCTTTTGAG GGGTGTGTATTCACATAGTCCTCGGGGCTCAGTCTTTTGAG < 41bp 0.538258036643806 0.768237596681854 0.045178413 0.12524629 prediction 0.459959120076097 Functional Gain - CASC3 ENSG00000108349 UTR3 Human protein_coding chr17:38327574 chr17:38327577 . . 0 24 hm5C_associated_SNPs_115218 0 0 1 6 38327559 38327581 mRNA hsa-miR-125b CASC3 miRanda miRanda
8986 chr17 38327577 38327577 1 + A G rs73306851 38327574 + 38327554 38327594 41 GGGTGTGTATTCACATAGTCCTCAGGGCTCAGTCTTTTGAG GGGTGTGTATTCACATAGTCCTCGGGGCTCAGTCTTTTGAG < 41bp 0.538258036643806 0.768237596681854 0.045178413 0.12524629 prediction 0.459959120076097 Functional Gain - CASC3 ENSG00000108349 UTR3 Human protein_coding chr17:38327574 chr17:38327577 . . 0 24 hm5C_associated_SNPs_115218 0 0 1 6 38327557 38327581 mRNA hsa-miR-125a-5p CASC3 miRanda miRanda
8987 chr17 38327577 38327577 1 + A G rs73306851 38327574 + 38327554 38327594 41 GGGTGTGTATTCACATAGTCCTCAGGGCTCAGTCTTTTGAG GGGTGTGTATTCACATAGTCCTCGGGGCTCAGTCTTTTGAG < 41bp 0.538258036643806 0.768237596681854 0.045178413 0.12524629 prediction 0.459959120076097 Functional Gain - CASC3 ENSG00000108349 UTR3 Human protein_coding chr17:38327574 chr17:38327577 . . 0 24 hm5C_associated_SNPs_115218 0 0 1 6 38327569 38327591 mRNA hsa-miR-320a CASC3 miRanda miRanda
8988 chr17 38327577 38327577 1 + A G rs73306851 38327574 + 38327554 38327594 41 GGGTGTGTATTCACATAGTCCTCAGGGCTCAGTCTTTTGAG GGGTGTGTATTCACATAGTCCTCGGGGCTCAGTCTTTTGAG < 41bp 0.538258036643806 0.768237596681854 0.045178413 0.12524629 prediction 0.459959120076097 Functional Gain - CASC3 ENSG00000108349 UTR3 Human protein_coding chr17:38327574 chr17:38327577 . . 0 24 hm5C_associated_SNPs_115218 0 0 1 6 38327569 38327591 mRNA hsa-miR-320b CASC3 miRanda miRanda
8989 chr17 38327577 38327577 1 + A G rs73306851 38327574 + 38327554 38327594 41 GGGTGTGTATTCACATAGTCCTCAGGGCTCAGTCTTTTGAG GGGTGTGTATTCACATAGTCCTCGGGGCTCAGTCTTTTGAG < 41bp 0.538258036643806 0.768237596681854 0.045178413 0.12524629 prediction 0.459959120076097 Functional Gain - CASC3 ENSG00000108349 UTR3 Human protein_coding chr17:38327574 chr17:38327577 . . 0 24 hm5C_associated_SNPs_115218 0 0 1 6 38327571 38327591 mRNA hsa-miR-320c CASC3 miRanda miRanda
8990 chr17 38327577 38327577 1 + A G rs73306851 38327574 + 38327554 38327594 41 GGGTGTGTATTCACATAGTCCTCAGGGCTCAGTCTTTTGAG GGGTGTGTATTCACATAGTCCTCGGGGCTCAGTCTTTTGAG < 41bp 0.538258036643806 0.768237596681854 0.045178413 0.12524629 prediction 0.459959120076097 Functional Gain - CASC3 ENSG00000108349 UTR3 Human protein_coding chr17:38327574 chr17:38327577 . . 0 24 hm5C_associated_SNPs_115218 0 0 1 6 38327572 38327591 mRNA hsa-miR-320d CASC3 miRanda miRanda
8991 chr7 148921569 148921569 1 + A G BRCA 148921566 + 148921546 148921586 41 GCAAGAGCTTCATCCGCAAGCAGAACCTGCTCAAGCACCAG GCAAGAGCTTCATCCGCAAGCAGGACCTGCTCAAGCACCAG < 41bp 0.517132247579932 0.747057443732092 0.14374736 0.33113295 prediction 0.45985039230432 Functional Gain - ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921566 chr7:148921569 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_115242 0 0 1 1 148921568 148921588 mRNA hsa-miR-138 ZNF282 miRanda miRanda
8992 chr17 27077771 27077771 1 + C G rs78297051 27077770 + 27077750 27077790 41 CTGACTTATCAGTGATTCTTCCGCGGGTTCGGACAGGGCCT CTGACTTATCAGTGATTCTTCGGCGGGTTCGGACAGGGCCT < 41bp 0.5718357336187 0.801729699387905 0.83041245 0.93144286 prediction 0.459787931538409 Functional Gain - TRAF4 ENSG00000076604 UTR3 Human protein_coding chr17:27077770 chr17:27077771 . . 0 22 hm5C_associated_SNPs_115255 0 0 0 1 27077766 27077788 mRNA hsa-miR-339-5p TRAF4 miRanda miRanda
8993 chr11 60076105 60076105 1 + C A rs10681 60076104 + 60076084 60076124 41 TTTTCTCCTACCTATGGGGACCAAAGTGCTTTTTCCTTCAG TTTTCTCCTACCTATGGGGACAAAAGTGCTTTTTCCTTCAG < 41bp 0.493886112202054 0.729886525064256 0.056110233 0.1528714 prediction 0.459773050128511 Functional Gain - MS4A4A ENSG00000110079 UTR3 Human protein_coding chr11:60076104 chr11:60076105 . . 0 22 hm5C_associated_SNPs_115263 0 0 0 3 60076087 60076108 mRNA hsa-miR-133a MS4A4A miRanda miRanda
8994 chr11 60076105 60076105 1 + C A rs10681 60076104 + 60076084 60076124 41 TTTTCTCCTACCTATGGGGACCAAAGTGCTTTTTCCTTCAG TTTTCTCCTACCTATGGGGACAAAAGTGCTTTTTCCTTCAG < 41bp 0.493886112202054 0.729886525064256 0.056110233 0.1528714 prediction 0.459773050128511 Functional Gain - MS4A4A ENSG00000110079 UTR3 Human protein_coding chr11:60076104 chr11:60076105 . . 0 22 hm5C_associated_SNPs_115263 0 0 0 3 60076087 60076110 mRNA hsa-miR-9 MS4A4A miRanda miRanda
8995 chr11 60076105 60076105 1 + C A rs10681 60076104 + 60076084 60076124 41 TTTTCTCCTACCTATGGGGACCAAAGTGCTTTTTCCTTCAG TTTTCTCCTACCTATGGGGACAAAAGTGCTTTTTCCTTCAG < 41bp 0.493886112202054 0.729886525064256 0.056110233 0.1528714 prediction 0.459773050128511 Functional Gain - MS4A4A ENSG00000110079 UTR3 Human protein_coding chr11:60076104 chr11:60076105 . . 0 22 hm5C_associated_SNPs_115263 0 0 0 3 60076087 60076108 mRNA hsa-miR-133b MS4A4A miRanda miRanda
8996 chr17 78409975 78409975 1 + A G BLCA 78409972 + 78409952 78409992 41 GTGAGAGCACACGTCCTCGTCTCATTCCTGATCGAACGCGG GTGAGAGCACACGTCCTCGTCTCGTTCCTGATCGAACGCGG < 41bp 0.52296129818984 0.752824136880217 0.12421796 0.11454889 prediction 0.459725677380754 Functional Gain - ENDOV ENSG00000173818 CDS Human protein_coding chr17:78409972 chr17:78409975 nonsynonymous SNV 0.036 0 24 hm5C_associated_SNPs_115271 0 0 1 1 78409964 78409985 mRNA hsa-miR-383 FLJ35220 miRanda miRanda
8997 chrX 129499521 129499521 1 + C A UCEC 129499517 + 129499497 129499537 41 TTAAACTTTTCCTCTTAGTTCCAGCTTTACATGTGGTTTGG TTAAACTTTTCCTCTTAGTTCCAGATTTACATGTGGTTTGG < 41bp 0.374767378034943 0.72983943005566 0.39362115 0.5996765 prediction 0.459678860111321 Functional Gain - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129499517 chrX:129499521 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_115277 0 0 1 6 129499503 129499525 mRNA hsa-miR-320a SLC25A14 miRanda miRanda
8998 chrX 129499521 129499521 1 + C A UCEC 129499517 + 129499497 129499537 41 TTAAACTTTTCCTCTTAGTTCCAGCTTTACATGTGGTTTGG TTAAACTTTTCCTCTTAGTTCCAGATTTACATGTGGTTTGG < 41bp 0.374767378034943 0.72983943005566 0.39362115 0.5996765 prediction 0.459678860111321 Functional Gain - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129499517 chrX:129499521 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_115277 0 0 1 6 129499500 129499521 mRNA hsa-miR-378 SLC25A14 miRanda miRanda
8999 chrX 129499521 129499521 1 + C A UCEC 129499517 + 129499497 129499537 41 TTAAACTTTTCCTCTTAGTTCCAGCTTTACATGTGGTTTGG TTAAACTTTTCCTCTTAGTTCCAGATTTACATGTGGTTTGG < 41bp 0.374767378034943 0.72983943005566 0.39362115 0.5996765 prediction 0.459678860111321 Functional Gain - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129499517 chrX:129499521 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_115277 0 0 1 6 129499500 129499521 mRNA hsa-miR-422a SLC25A14 miRanda miRanda
9000 chrX 129499521 129499521 1 + C A UCEC 129499517 + 129499497 129499537 41 TTAAACTTTTCCTCTTAGTTCCAGCTTTACATGTGGTTTGG TTAAACTTTTCCTCTTAGTTCCAGATTTACATGTGGTTTGG < 41bp 0.374767378034943 0.72983943005566 0.39362115 0.5996765 prediction 0.459678860111321 Functional Gain - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129499517 chrX:129499521 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_115277 0 0 1 6 129499503 129499525 mRNA hsa-miR-320b SLC25A14 miRanda miRanda
9001 chrX 129499521 129499521 1 + C A UCEC 129499517 + 129499497 129499537 41 TTAAACTTTTCCTCTTAGTTCCAGCTTTACATGTGGTTTGG TTAAACTTTTCCTCTTAGTTCCAGATTTACATGTGGTTTGG < 41bp 0.374767378034943 0.72983943005566 0.39362115 0.5996765 prediction 0.459678860111321 Functional Gain - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129499517 chrX:129499521 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_115277 0 0 1 6 129499505 129499525 mRNA hsa-miR-320c SLC25A14 miRanda miRanda
9002 chrX 129499521 129499521 1 + C A UCEC 129499517 + 129499497 129499537 41 TTAAACTTTTCCTCTTAGTTCCAGCTTTACATGTGGTTTGG TTAAACTTTTCCTCTTAGTTCCAGATTTACATGTGGTTTGG < 41bp 0.374767378034943 0.72983943005566 0.39362115 0.5996765 prediction 0.459678860111321 Functional Gain - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129499517 chrX:129499521 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_115277 0 0 1 6 129499506 129499525 mRNA hsa-miR-320d SLC25A14 miRanda miRanda
9003 chr1 4476445 4476445 1 + T G rs114068602 4476443 + 4476423 4476463 41 AAGTCTGCCTGGGCCTCCTGCATGAGGTCATGAGTCTTAAT AAGTCTGCCTGGGCCTCCTGCAGGAGGTCATGAGTCTTAAT < 41bp 0.393869672840687 0.729733310470059 0.35387558 0.8331578 prediction 0.459466620940117 Functional Gain - LINC01777 ENSG00000235054 ncRNA_exonic Human lincRNA chr1:4476443 chr1:4476445 . . 0 23 hm5C_associated_SNPs_115320 0 0 0 1 4476440 4476462 mRNA hsa-miR-499-5p LOC284661 miRanda miRanda
9004 chr19 12061414 12061414 1 + C G rs372282172 12061410 + 12061390 12061430 41 TTCAACGGCATGGAAGGGTTCACACTTGGGAGAAACTCTAT TTCAACGGCATGGAAGGGTTCACAGTTGGGAGAAACTCTAT < 41bp 0.464878130940645 0.729696808290056 0.027860105 0.056999236 prediction 0.459393616580111 Functional Gain - ZNF700 ENSG00000267274 ncRNA_intronic Human sense_overlapping chr19:12061410 chr19:12061414 . . 0 25 hm5C_associated_SNPs_115334 0 0 1 4 12061414 12061437 mRNA hsa-miR-181a ZNF700 miRanda miRanda
9005 chr19 12061414 12061414 1 + C G rs372282172 12061410 + 12061390 12061430 41 TTCAACGGCATGGAAGGGTTCACACTTGGGAGAAACTCTAT TTCAACGGCATGGAAGGGTTCACAGTTGGGAGAAACTCTAT < 41bp 0.464878130940645 0.729696808290056 0.027860105 0.056999236 prediction 0.459393616580111 Functional Gain - ZNF700 ENSG00000267274 ncRNA_intronic Human sense_overlapping chr19:12061410 chr19:12061414 . . 0 25 hm5C_associated_SNPs_115334 0 0 1 4 12061402 12061422 mRNA hsa-miR-150 ZNF700 miRanda miRanda
9006 chr19 12061414 12061414 1 + C G rs372282172 12061410 + 12061390 12061430 41 TTCAACGGCATGGAAGGGTTCACACTTGGGAGAAACTCTAT TTCAACGGCATGGAAGGGTTCACAGTTGGGAGAAACTCTAT < 41bp 0.464878130940645 0.729696808290056 0.027860105 0.056999236 prediction 0.459393616580111 Functional Gain - ZNF700 ENSG00000267274 ncRNA_intronic Human sense_overlapping chr19:12061410 chr19:12061414 . . 0 25 hm5C_associated_SNPs_115334 0 0 1 4 12061413 12061433 mRNA hsa-miR-376a ZNF700 miRanda miRanda
9007 chr19 12061414 12061414 1 + C G rs372282172 12061410 + 12061390 12061430 41 TTCAACGGCATGGAAGGGTTCACACTTGGGAGAAACTCTAT TTCAACGGCATGGAAGGGTTCACAGTTGGGAGAAACTCTAT < 41bp 0.464878130940645 0.729696808290056 0.027860105 0.056999236 prediction 0.459393616580111 Functional Gain - ZNF700 ENSG00000267274 ncRNA_intronic Human sense_overlapping chr19:12061410 chr19:12061414 . . 0 25 hm5C_associated_SNPs_115334 0 0 1 4 12061412 12061433 mRNA hsa-miR-376b ZNF700 miRanda miRanda
9008 chr6 26428150 26428150 1 + T C UCEC 26428148 + 26428128 26428168 41 GTGGTGATCCTGCCTGTTATCATGATTATTCTGATGATACC GTGGTGATCCTGCCTGTTATCACGATTATTCTGATGATACC < 41bp 0.555132256452624 0.78478425151725 0.9272324 0.91776145 prediction 0.459303990129251 Functional Gain - BTN2A3P ENSG00000124549 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:26428148 chr6:26428150 . . 0 23 hm5C_associated_SNPs_115354 0 0 0 2 26428132 26428153 mRNA hsa-miR-433 BTN2A3 miRanda miRanda
9009 chr6 26428150 26428150 1 + T C UCEC 26428148 + 26428128 26428168 41 GTGGTGATCCTGCCTGTTATCATGATTATTCTGATGATACC GTGGTGATCCTGCCTGTTATCACGATTATTCTGATGATACC < 41bp 0.555132256452624 0.78478425151725 0.9272324 0.91776145 prediction 0.459303990129251 Functional Gain - BTN2A3P ENSG00000124549 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:26428148 chr6:26428150 . . 0 23 hm5C_associated_SNPs_115354 0 0 0 2 26428127 26428151 mRNA hsa-miR-410 BTN2A3 miRanda miRanda
9010 chr19 56694509 56694509 1 + C A rs141705754 56694505 + 56694485 56694525 41 GTTGTATTTTTGTTTCTAGACGGGCTCCCCTACTCCCACCC GTTGTATTTTTGTTTCTAGACGGGATCCCCTACTCCCACCC < 41bp 0.692775874692107 0.922403283576654 0.36337298 0.43165523 prediction 0.459254817769096 Functional Gain - GALP ENSG00000197487 CDS Human protein_coding chr19:56694505 chr19:56694509 nonsynonymous SNV 0.019 3 25 hm5C_associated_SNPs_115369 0 0 0 1 56694504 56694518 mRNA hsa-miR-491-5p GALP miRanda miRanda
9011 chr19 37880681 37880681 1 + C A UCEC 37880677 + 37880657 37880697 41 TAAGACTACACCAGAGAATTCACGCTGGAGAAAAACCTTAT TAAGACTACACCAGAGAATTCACGATGGAGAAAAACCTTAT < 41bp 0.323123247456938 0.729585651915042 0.117829174 0.26647744 prediction 0.459171303830084 Functional Gain - ZNF527 ENSG00000189164 CDS Human protein_coding chr19:37880677 chr19:37880681 nonsynonymous SNV 0.165 0 25 hm5C_associated_SNPs_115382 0 0 1 1 37880663 37880684 mRNA hsa-miR-125a-3p ZNF527 miRanda miRanda
9012 chr15 25436471 25436471 1 + C A UCEC 25436467 + 25436447 25436487 41 AGCTGAAGCTCAGGCCCTTCCTGGCACCCTGGTCTGCTGCA AGCTGAAGCTCAGGCCCTTCCTGGAACCCTGGTCTGCTGCA < 41bp 0.672977202826901 0.902483106560592 0.05523017 0.16263148 prediction 0.459011807467381 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25436467 chr15:25436471 . . 0 25 hm5C_associated_SNPs_115421 0 0 0 1 25436470 25436491 mRNA hsa-miR-148b SNRPN miRanda miRanda
9013 chr15 25427354 25427354 1 + C A LUAD 25427353 + 25427333 25427373 41 TGTTTCCCCAGATGTTGAGCCCAGAGGAAGACTTGCACTGG TGTTTCCCCAGATGTTGAGCCAAGAGGAAGACTTGCACTGG < 41bp 0.490893757370712 0.729495604311169 0.27568734 0.70553654 prediction 0.458991208622337 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25427353 chr15:25427354 . . 0 22 hm5C_associated_SNPs_115428 0 0 0 3 25427344 25427357 mRNA hsa-miR-149 SNRPN miRanda miRanda
9014 chr15 25427354 25427354 1 + C A LUAD 25427353 + 25427333 25427373 41 TGTTTCCCCAGATGTTGAGCCCAGAGGAAGACTTGCACTGG TGTTTCCCCAGATGTTGAGCCAAGAGGAAGACTTGCACTGG < 41bp 0.490893757370712 0.729495604311169 0.27568734 0.70553654 prediction 0.458991208622337 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25427353 chr15:25427354 . . 0 22 hm5C_associated_SNPs_115428 0 0 0 3 25427344 25427359 mRNA hsa-miR-330-5p SNRPN miRanda miRanda
9015 chr15 25427354 25427354 1 + C A LUAD 25427353 + 25427333 25427373 41 TGTTTCCCCAGATGTTGAGCCCAGAGGAAGACTTGCACTGG TGTTTCCCCAGATGTTGAGCCAAGAGGAAGACTTGCACTGG < 41bp 0.490893757370712 0.729495604311169 0.27568734 0.70553654 prediction 0.458991208622337 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25427353 chr15:25427354 . . 0 22 hm5C_associated_SNPs_115428 0 0 0 3 25427344 25427359 mRNA hsa-miR-326 SNRPN miRanda miRanda
9016 chr4 60044 60044 1 + C T READ 60043 + 60023 60063 41 ATGAGACAGCAGCCAAACCCCCAGGTAGGTGAGACTGAATG ATGAGACAGCAGCCAAACCCCTAGGTAGGTGAGACTGAATG < 41bp 0.49473545743397 0.729428067027952 0.12150085 0.12744471 prediction 0.458856134055905 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60043 chr4:60044 nonsynonymous SNV 0.289 3 22 hm5C_associated_SNPs_115453 0 0 1 12 60039 60046 mRNA hsa-miR-302a ZNF595 miRanda miRanda
9017 chr4 60044 60044 1 + C T READ 60043 + 60023 60063 41 ATGAGACAGCAGCCAAACCCCCAGGTAGGTGAGACTGAATG ATGAGACAGCAGCCAAACCCCTAGGTAGGTGAGACTGAATG < 41bp 0.49473545743397 0.729428067027952 0.12150085 0.12744471 prediction 0.458856134055905 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60043 chr4:60044 nonsynonymous SNV 0.289 3 22 hm5C_associated_SNPs_115453 0 0 1 12 60038 60046 mRNA hsa-miR-302b ZNF595 miRanda miRanda
9018 chr4 60044 60044 1 + C T READ 60043 + 60023 60063 41 ATGAGACAGCAGCCAAACCCCCAGGTAGGTGAGACTGAATG ATGAGACAGCAGCCAAACCCCTAGGTAGGTGAGACTGAATG < 41bp 0.49473545743397 0.729428067027952 0.12150085 0.12744471 prediction 0.458856134055905 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60043 chr4:60044 nonsynonymous SNV 0.289 3 22 hm5C_associated_SNPs_115453 0 0 1 12 60038 60046 mRNA hsa-miR-302c ZNF595 miRanda miRanda
9019 chr4 60044 60044 1 + C T READ 60043 + 60023 60063 41 ATGAGACAGCAGCCAAACCCCCAGGTAGGTGAGACTGAATG ATGAGACAGCAGCCAAACCCCTAGGTAGGTGAGACTGAATG < 41bp 0.49473545743397 0.729428067027952 0.12150085 0.12744471 prediction 0.458856134055905 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60043 chr4:60044 nonsynonymous SNV 0.289 3 22 hm5C_associated_SNPs_115453 0 0 1 12 60039 60046 mRNA hsa-miR-302d ZNF595 miRanda miRanda
9020 chr4 60044 60044 1 + C T READ 60043 + 60023 60063 41 ATGAGACAGCAGCCAAACCCCCAGGTAGGTGAGACTGAATG ATGAGACAGCAGCCAAACCCCTAGGTAGGTGAGACTGAATG < 41bp 0.49473545743397 0.729428067027952 0.12150085 0.12744471 prediction 0.458856134055905 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60043 chr4:60044 nonsynonymous SNV 0.289 3 22 hm5C_associated_SNPs_115453 0 0 1 12 60039 60046 mRNA hsa-miR-372 ZNF595 miRanda miRanda
9021 chr4 60044 60044 1 + C T READ 60043 + 60023 60063 41 ATGAGACAGCAGCCAAACCCCCAGGTAGGTGAGACTGAATG ATGAGACAGCAGCCAAACCCCTAGGTAGGTGAGACTGAATG < 41bp 0.49473545743397 0.729428067027952 0.12150085 0.12744471 prediction 0.458856134055905 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60043 chr4:60044 nonsynonymous SNV 0.289 3 22 hm5C_associated_SNPs_115453 0 0 1 12 60037 60046 mRNA hsa-miR-373 ZNF595 miRanda miRanda
9022 chr4 60044 60044 1 + C T READ 60043 + 60023 60063 41 ATGAGACAGCAGCCAAACCCCCAGGTAGGTGAGACTGAATG ATGAGACAGCAGCCAAACCCCTAGGTAGGTGAGACTGAATG < 41bp 0.49473545743397 0.729428067027952 0.12150085 0.12744471 prediction 0.458856134055905 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60043 chr4:60044 nonsynonymous SNV 0.289 3 22 hm5C_associated_SNPs_115453 0 0 1 12 60040 60046 mRNA hsa-miR-520e ZNF595 miRanda miRanda
9023 chr4 60044 60044 1 + C T READ 60043 + 60023 60063 41 ATGAGACAGCAGCCAAACCCCCAGGTAGGTGAGACTGAATG ATGAGACAGCAGCCAAACCCCTAGGTAGGTGAGACTGAATG < 41bp 0.49473545743397 0.729428067027952 0.12150085 0.12744471 prediction 0.458856134055905 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60043 chr4:60044 nonsynonymous SNV 0.289 3 22 hm5C_associated_SNPs_115453 0 0 1 12 60039 60046 mRNA hsa-miR-520a-3p ZNF595 miRanda miRanda
9024 chr4 60044 60044 1 + C T READ 60043 + 60023 60063 41 ATGAGACAGCAGCCAAACCCCCAGGTAGGTGAGACTGAATG ATGAGACAGCAGCCAAACCCCTAGGTAGGTGAGACTGAATG < 41bp 0.49473545743397 0.729428067027952 0.12150085 0.12744471 prediction 0.458856134055905 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60043 chr4:60044 nonsynonymous SNV 0.289 3 22 hm5C_associated_SNPs_115453 0 0 1 12 60040 60046 mRNA hsa-miR-520b ZNF595 miRanda miRanda
9025 chr4 60044 60044 1 + C T READ 60043 + 60023 60063 41 ATGAGACAGCAGCCAAACCCCCAGGTAGGTGAGACTGAATG ATGAGACAGCAGCCAAACCCCTAGGTAGGTGAGACTGAATG < 41bp 0.49473545743397 0.729428067027952 0.12150085 0.12744471 prediction 0.458856134055905 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60043 chr4:60044 nonsynonymous SNV 0.289 3 22 hm5C_associated_SNPs_115453 0 0 1 12 60039 60046 mRNA hsa-miR-520c-3p ZNF595 miRanda miRanda
9026 chr4 60044 60044 1 + C T READ 60043 + 60023 60063 41 ATGAGACAGCAGCCAAACCCCCAGGTAGGTGAGACTGAATG ATGAGACAGCAGCCAAACCCCTAGGTAGGTGAGACTGAATG < 41bp 0.49473545743397 0.729428067027952 0.12150085 0.12744471 prediction 0.458856134055905 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60043 chr4:60044 nonsynonymous SNV 0.289 3 22 hm5C_associated_SNPs_115453 0 0 1 12 60038 60046 mRNA hsa-miR-520d-3p ZNF595 miRanda miRanda
9027 chr4 60044 60044 1 + C T READ 60043 + 60023 60063 41 ATGAGACAGCAGCCAAACCCCCAGGTAGGTGAGACTGAATG ATGAGACAGCAGCCAAACCCCTAGGTAGGTGAGACTGAATG < 41bp 0.49473545743397 0.729428067027952 0.12150085 0.12744471 prediction 0.458856134055905 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60043 chr4:60044 nonsynonymous SNV 0.289 3 22 hm5C_associated_SNPs_115453 0 0 1 12 60044 60046 mRNA hsa-miR-302e ZNF595 miRanda miRanda
9028 chr5 147653926 147653926 1 + T C UCEC 147653924 + 147653904 147653944 41 TAGCAGGAATTTTCAATAAACGTGACTTCACTAGGTGGCCT TAGCAGGAATTTTCAATAAACGCGACTTCACTAGGTGGCCT < 41bp 0.56307193467846 0.792344987410259 0.2150755 0.0993489 prediction 0.458546105463598 Functional Gain - SPINK13 ENSG00000214510 CDS Human protein_coding chr5:147653924 chr5:147653926 synonymous SNV . 0 23 hm5C_associated_SNPs_115506 0 0 1 2 147653907 147653930 mRNA hsa-miR-223 SPINK13 miRanda miRanda
9029 chr5 147653926 147653926 1 + T C UCEC 147653924 + 147653904 147653944 41 TAGCAGGAATTTTCAATAAACGTGACTTCACTAGGTGGCCT TAGCAGGAATTTTCAATAAACGCGACTTCACTAGGTGGCCT < 41bp 0.56307193467846 0.792344987410259 0.2150755 0.0993489 prediction 0.458546105463598 Functional Gain - SPINK13 ENSG00000214510 CDS Human protein_coding chr5:147653924 chr5:147653926 synonymous SNV . 0 23 hm5C_associated_SNPs_115506 0 0 1 2 147653907 147653932 mRNA hsa-miR-224 SPINK13 miRanda miRanda
9030 chr1 107600578 107600578 1 + C G SARC 107600574 + 107600554 107600594 41 CGTGCAAGTAGGGGGAATATCTCCCCCTTTTCCCTCATAGC CGTGCAAGTAGGGGGAATATCTCCGCCTTTTCCCTCATAGC < 41bp 0.62031941836513 0.849315438890805 0.14854741 0.22428039 prediction 0.457992041051351 Functional Gain - PRMT6 ENSG00000198890 UTR3 Human protein_coding chr1:107600574 chr1:107600578 . . 0 25 hm5C_associated_SNPs_115631 0 0 1 1 107600577 107600598 mRNA hsa-miR-202 PRMT6 miRanda miRanda
9031 chr1 25775335 25775335 1 + T C UCEC 25775333 + 25775313 25775353 41 TTTTGTTTGTGTAGCATTCACGTCAAATATAATATGCCTGC TTTTGTTTGTGTAGCATTCACGCCAAATATAATATGCCTGC < 41bp 0.442349863980303 0.728966062059603 0.054416627 0.2114892 prediction 0.457932124119206 Functional Gain - TMEM57 ENSG00000204178 CDS Human protein_coding chr1:25775333 chr1:25775335 nonsynonymous SNV 0.887 4 23 hm5C_associated_SNPs_115644 0 0 1 1 25775335 25775356 mRNA hsa-miR-214 TMEM57 miRanda miRanda
9032 chr1 212988989 212988989 1 + C A rs6700544 212988988 + 212988968 212989008 41 CGAGTCTCCTCCCTCAGCCTCCCAAGTAGCTGGGATTACAG CGAGTCTCCTCCCTCAGCCTCACAAGTAGCTGGGATTACAG < 41bp 0.56341652671754 0.792378806526647 0.09008941 0.08441791 prediction 0.457924559618214 Functional Gain - TATDN3 ENSG00000203705 UTR3 Human protein_coding chr1:212988988 chr1:212988989 . . 0 22 hm5C_associated_SNPs_115647 0 0 1 1 212988968 212988989 mRNA hsa-miR-485-5p TATDN3 miRanda miRanda
9033 chr5 128797410 128797410 1 + C A BRCA 128797409 + 128797389 128797429 41 CCGGAGCTGTGCTGCGGCACCCTGGCTCGCTGGCTTCTTTC CCGGAGCTGTGCTGCGGCACCATGGCTCGCTGGCTTCTTTC < 41bp 0.473351974477466 0.728700101172108 0.38395786 0.3862961 prediction 0.457400202344216 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128797409 chr5:128797410 nonsynonymous SNV 0.582 2 22 hm5C_associated_SNPs_115769 0 0 0 1 128797400 128797424 mRNA hsa-miR-503 ADAMTS19 miRanda miRanda
9034 chr7 99590893 99590893 1 + C A rs6974373 99590892 + 99590872 99590912 41 GATATGGCCAAGTCGAGGTACCGGTTAACCAAAGATGCTGA GATATGGCCAAGTCGAGGTACAGGTTAACCAAAGATGCTGA < 41bp 0.547929709915364 0.776570169028537 0.06773028 0.061351538 prediction 0.457280918226347 Functional Gain - AZGP1P1;ZKSCAN1 ENSG00000235713 downstream Human unprocessed_pseudogene chr7:99590892 chr7:99590893 . . 0 22 hm5C_associated_SNPs_115791 0 0 0 1 99590884 99590906 mRNA hsa-miR-9 AZGP1P1 miRanda miRanda
9035 chr20 2840447 2840447 1 + C T rs201176727 2840446 + 2840426 2840466 41 GCTGCTGCACCCTATGGGGGCCCCATTGGTATGTTGCCCCT GCTGCTGCACCCTATGGGGGCTCCATTGGTATGTTGCCCCT < 41bp 0.579511929769137 0.808115653518377 0.16211462 0.8376785 prediction 0.457207447498481 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840446 chr20:2840447 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_115802 0 0 1 3 2840438 2840453 mRNA hsa-miR-148a VPS16 miRanda miRanda
9036 chr20 2840447 2840447 1 + C T rs201176727 2840446 + 2840426 2840466 41 GCTGCTGCACCCTATGGGGGCCCCATTGGTATGTTGCCCCT GCTGCTGCACCCTATGGGGGCTCCATTGGTATGTTGCCCCT < 41bp 0.579511929769137 0.808115653518377 0.16211462 0.8376785 prediction 0.457207447498481 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840446 chr20:2840447 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_115802 0 0 1 3 2840438 2840453 mRNA hsa-miR-152 VPS16 miRanda miRanda
9037 chr20 2840447 2840447 1 + C T rs201176727 2840446 + 2840426 2840466 41 GCTGCTGCACCCTATGGGGGCCCCATTGGTATGTTGCCCCT GCTGCTGCACCCTATGGGGGCTCCATTGGTATGTTGCCCCT < 41bp 0.579511929769137 0.808115653518377 0.16211462 0.8376785 prediction 0.457207447498481 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840446 chr20:2840447 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_115802 0 0 1 3 2840438 2840453 mRNA hsa-miR-148b VPS16 miRanda miRanda
9038 chr10 74886544 74886544 1 + A G rs17658872 74886541 + 74886521 74886561 41 GGCCCTTCCCTAGTGGCTCACTCATGATTGCTTGCCATGCA GGCCCTTCCCTAGTGGCTCACTCGTGATTGCTTGCCATGCA < 41bp 0.492934834314362 0.728552863946078 0.26758093 0.3575561 prediction 0.457105727892155 Functional Gain - NUDT13 ENSG00000166321 CDS Human protein_coding chr10:74886541 chr10:74886544 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_115825 0 0 1 1 74886526 74886548 mRNA hsa-miR-433 NUDT13 miRanda miRanda
9039 chr8 21955034 21955034 1 + C G rs190462850 21955033 + 21955013 21955053 41 GTCCCTGGCCTCAGTACCCCCCAGGCATGCGGCAGCAGGTG GTCCCTGGCCTCAGTACCCCCGAGGCATGCGGCAGCAGGTG < 41bp 0.396682704862331 0.728283237353708 0.45754156 0.8976953 prediction 0.456566474707417 Functional Gain - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21955033 chr8:21955034 nonsynonymous SNV 0.596 4 22 hm5C_associated_SNPs_115948 0 0 1 1 21955032 21955052 mRNA hsa-miR-370 FAM160B2 miRanda miRanda
9040 chr19 47712468 47712468 1 + T C STAD 47712466 + 47712446 47712486 41 AACTTCTTCTTCTTCGATGGCATGAAGGGGAATGGGATTGT AACTTCTTCTTCTTCGATGGCACGAAGGGGAATGGGATTGT < 41bp 0.601958845381462 0.83005367305501 0.20901328 0.1477274 prediction 0.456189655347097 Functional Gain - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47712466 chr19:47712468 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_116029 0 0 1 1 47712453 47712474 mRNA hsa-miR-205 SAE1 miRanda miRanda
9041 chr2 24276784 24276784 1 + C T SKCM 24276783 + 24276763 24276803 41 TCCCTGCAGGAAGGACATTCCCCAAGAAGGGCCAAACGTGT TCCCTGCAGGAAGGACATTCCTCAAGAAGGGCCAAACGTGT < 41bp 0.580715163137839 0.808744672831049 0.021376163 0.07780278 prediction 0.456059019386419 Functional Gain - FKBP1B ENSG00000119782 CDS Human protein_coding chr2:24276783 chr2:24276784 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_116053 0 0 1 5 24276772 24276784 mRNA hsa-miR-1 FKBP1B miRanda miRanda
9042 chr2 24276784 24276784 1 + C T SKCM 24276783 + 24276763 24276803 41 TCCCTGCAGGAAGGACATTCCCCAAGAAGGGCCAAACGTGT TCCCTGCAGGAAGGACATTCCTCAAGAAGGGCCAAACGTGT < 41bp 0.580715163137839 0.808744672831049 0.021376163 0.07780278 prediction 0.456059019386419 Functional Gain - FKBP1B ENSG00000119782 CDS Human protein_coding chr2:24276783 chr2:24276784 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_116053 0 0 1 5 24276772 24276784 mRNA hsa-miR-206 FKBP1B miRanda miRanda
9043 chr2 24276784 24276784 1 + C T SKCM 24276783 + 24276763 24276803 41 TCCCTGCAGGAAGGACATTCCCCAAGAAGGGCCAAACGTGT TCCCTGCAGGAAGGACATTCCTCAAGAAGGGCCAAACGTGT < 41bp 0.580715163137839 0.808744672831049 0.021376163 0.07780278 prediction 0.456059019386419 Functional Gain - FKBP1B ENSG00000119782 CDS Human protein_coding chr2:24276783 chr2:24276784 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_116053 0 0 1 5 24276772 24276797 mRNA hsa-miR-328 FKBP1B miRanda miRanda
9044 chr2 24276784 24276784 1 + C T SKCM 24276783 + 24276763 24276803 41 TCCCTGCAGGAAGGACATTCCCCAAGAAGGGCCAAACGTGT TCCCTGCAGGAAGGACATTCCTCAAGAAGGGCCAAACGTGT < 41bp 0.580715163137839 0.808744672831049 0.021376163 0.07780278 prediction 0.456059019386419 Functional Gain - FKBP1B ENSG00000119782 CDS Human protein_coding chr2:24276783 chr2:24276784 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_116053 0 0 1 5 24276777 24276797 mRNA hsa-miR-328 FKBP1B miRanda miRanda
9045 chr2 24276784 24276784 1 + C T SKCM 24276783 + 24276763 24276803 41 TCCCTGCAGGAAGGACATTCCCCAAGAAGGGCCAAACGTGT TCCCTGCAGGAAGGACATTCCTCAAGAAGGGCCAAACGTGT < 41bp 0.580715163137839 0.808744672831049 0.021376163 0.07780278 prediction 0.456059019386419 Functional Gain - FKBP1B ENSG00000119782 CDS Human protein_coding chr2:24276783 chr2:24276784 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_116053 0 0 1 5 24276772 24276784 mRNA hsa-miR-613 FKBP1B miRanda miRanda
9046 chr22 31321989 31321989 1 + A G rs557420580 31321986 + 31321966 31322006 41 ATGGAGGTCACCAGCTCAGCCCCAGGGGTTCTTTCACACAC ATGGAGGTCACCAGCTCAGCCCCGGGGGTTCTTTCACACAC < 41bp 0.480681199890588 0.727997156801077 0.19867629 0.20449448 prediction 0.455994313602154 Functional Gain - MORC2-AS1 ENSG00000235989 ncRNA_exonic Human antisense chr22:31321986 chr22:31321989 . . 0 24 hm5C_associated_SNPs_116070 0 0 0 1 31321985 31322006 mRNA hsa-miR-653 C22orf27 miRanda miRanda
9047 chr11 49831437 49831437 1 + A G LUAD 49831434 + 49831414 49831454 41 GTTTTCTTGCATGGGGTGCTCAGACTTTCACCTCTGGCAAG GTTTTCTTGCATGGGGTGCTCAGGCTTTCACCTCTGGCAAG < 41bp 0.521761106386433 0.749723191487863 0.6752124 0.8967489 prediction 0.455924170202861 Functional Gain - LOC440040 ENSG00000205035 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:49831434 chr11:49831437 . . 0 24 hm5C_associated_SNPs_116083 0 0 0 1 49831436 49831459 mRNA hsa-miR-200c LOC440040 miRanda miRanda
9048 chr1 76259773 76259773 1 + C T LIHC 76259772 + 76259752 76259792 41 ACTTTTTTCCCTCCTAGTTACCAGATGTATGCTACTCATGG ACTTTTTTCCCTCCTAGTTACTAGATGTATGCTACTCATGG < 41bp 0.492962806778588 0.727957650295835 0.24572152 0.23383567 prediction 0.45591530059167 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76259772 chr1:76259773 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_116084 0 0 1 1 76259769 76259784 mRNA hsa-miR-222 RABGGTB miRanda miRanda
9049 chr1 27657221 27657221 1 + C T SKCM 27657220 + 27657200 27657240 41 TTTCCTCACAGGTGGTTTTTCCCCATCATCGGCCACATGGG TTTCCTCACAGGTGGTTTTTCTCCATCATCGGCCACATGGG < 41bp 0.585388375395223 0.813341638231947 0.034959495 0.9440018 prediction 0.455906525673447 Functional Gain - TMEM222 ENSG00000186501 CDS Human protein_coding chr1:27657220 chr1:27657221 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_116087 0 0 1 1 27657220 27657243 mRNA hsa-miR-874 TMEM222 miRanda miRanda
9050 chr6 154411267 154411267 1 + C A LUAD 154411263 + 154411243 154411283 41 CTGCAACTGGATCCTCTCTTCAGCCATTGGTCTTCCTGTAA CTGCAACTGGATCCTCTCTTCAGCAATTGGTCTTCCTGTAA < 41bp 0.376761798307412 0.727919812487322 0.10836941 0.17973119 prediction 0.455839624974643 Functional Gain - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154411263 chr6:154411267 synonymous SNV . 0 25 hm5C_associated_SNPs_116103 0 0 0 1 154411257 154411279 mRNA hsa-miR-7 OPRM1 miRanda miRanda
9051 chr7 44842037 44842037 1 + C A rs539726282 44842036 + 44842016 44842056 41 GAGATTACAGATGTGAGCCACCGCACCCTACCTCATTTTCT GAGATTACAGATGTGAGCCACAGCACCCTACCTCATTTTCT < 41bp 0.482563885217888 0.727839718081316 0.182484 0.1853799 prediction 0.455679436162632 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842036 chr7:44842037 . . 0 22 hm5C_associated_SNPs_116139 0 0 1 9 44842029 44842050 mRNA hsa-let-7a PPIA miRanda miRanda
9052 chr7 44842037 44842037 1 + C A rs539726282 44842036 + 44842016 44842056 41 GAGATTACAGATGTGAGCCACCGCACCCTACCTCATTTTCT GAGATTACAGATGTGAGCCACAGCACCCTACCTCATTTTCT < 41bp 0.482563885217888 0.727839718081316 0.182484 0.1853799 prediction 0.455679436162632 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842036 chr7:44842037 . . 0 22 hm5C_associated_SNPs_116139 0 0 1 9 44842031 44842050 mRNA hsa-let-7b PPIA miRanda miRanda
9053 chr7 44842037 44842037 1 + C A rs539726282 44842036 + 44842016 44842056 41 GAGATTACAGATGTGAGCCACCGCACCCTACCTCATTTTCT GAGATTACAGATGTGAGCCACAGCACCCTACCTCATTTTCT < 41bp 0.482563885217888 0.727839718081316 0.182484 0.1853799 prediction 0.455679436162632 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842036 chr7:44842037 . . 0 22 hm5C_associated_SNPs_116139 0 0 1 9 44842031 44842050 mRNA hsa-let-7c PPIA miRanda miRanda
9054 chr7 44842037 44842037 1 + C A rs539726282 44842036 + 44842016 44842056 41 GAGATTACAGATGTGAGCCACCGCACCCTACCTCATTTTCT GAGATTACAGATGTGAGCCACAGCACCCTACCTCATTTTCT < 41bp 0.482563885217888 0.727839718081316 0.182484 0.1853799 prediction 0.455679436162632 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842036 chr7:44842037 . . 0 22 hm5C_associated_SNPs_116139 0 0 1 9 44842026 44842050 mRNA hsa-let-7d PPIA miRanda miRanda
9055 chr7 44842037 44842037 1 + C A rs539726282 44842036 + 44842016 44842056 41 GAGATTACAGATGTGAGCCACCGCACCCTACCTCATTTTCT GAGATTACAGATGTGAGCCACAGCACCCTACCTCATTTTCT < 41bp 0.482563885217888 0.727839718081316 0.182484 0.1853799 prediction 0.455679436162632 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842036 chr7:44842037 . . 0 22 hm5C_associated_SNPs_116139 0 0 1 9 44842029 44842050 mRNA hsa-let-7e PPIA miRanda miRanda
9056 chr7 44842037 44842037 1 + C A rs539726282 44842036 + 44842016 44842056 41 GAGATTACAGATGTGAGCCACCGCACCCTACCTCATTTTCT GAGATTACAGATGTGAGCCACAGCACCCTACCTCATTTTCT < 41bp 0.482563885217888 0.727839718081316 0.182484 0.1853799 prediction 0.455679436162632 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842036 chr7:44842037 . . 0 22 hm5C_associated_SNPs_116139 0 0 1 9 44842029 44842050 mRNA hsa-let-7f PPIA miRanda miRanda
9057 chr7 44842037 44842037 1 + C A rs539726282 44842036 + 44842016 44842056 41 GAGATTACAGATGTGAGCCACCGCACCCTACCTCATTTTCT GAGATTACAGATGTGAGCCACAGCACCCTACCTCATTTTCT < 41bp 0.482563885217888 0.727839718081316 0.182484 0.1853799 prediction 0.455679436162632 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842036 chr7:44842037 . . 0 22 hm5C_associated_SNPs_116139 0 0 1 9 44842029 44842050 mRNA hsa-miR-98 PPIA miRanda miRanda
9058 chr7 44842037 44842037 1 + C A rs539726282 44842036 + 44842016 44842056 41 GAGATTACAGATGTGAGCCACCGCACCCTACCTCATTTTCT GAGATTACAGATGTGAGCCACAGCACCCTACCTCATTTTCT < 41bp 0.482563885217888 0.727839718081316 0.182484 0.1853799 prediction 0.455679436162632 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842036 chr7:44842037 . . 0 22 hm5C_associated_SNPs_116139 0 0 1 9 44842030 44842050 mRNA hsa-let-7g PPIA miRanda miRanda
9059 chr7 44842037 44842037 1 + C A rs539726282 44842036 + 44842016 44842056 41 GAGATTACAGATGTGAGCCACCGCACCCTACCTCATTTTCT GAGATTACAGATGTGAGCCACAGCACCCTACCTCATTTTCT < 41bp 0.482563885217888 0.727839718081316 0.182484 0.1853799 prediction 0.455679436162632 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842036 chr7:44842037 . . 0 22 hm5C_associated_SNPs_116139 0 0 1 9 44842028 44842050 mRNA hsa-let-7i PPIA miRanda miRanda
9060 chr20 44048200 44048200 1 + C T SKCM 44048199 + 44048179 44048219 41 GTTCCACACCAGCTACCACTCCCAGGCAGTGCATATCCGCC GTTCCACACCAGCTACCACTCTCAGGCAGTGCATATCCGCC < 41bp 0.517390696119734 0.745132843794644 0.06782189 0.030755848 prediction 0.455484295349821 Functional Gain - PIGT ENSG00000124155 CDS Human protein_coding chr20:44048199 chr20:44048200 synonymous SNV . 0 22 hm5C_associated_SNPs_116177 0 0 1 2 44048194 44048215 mRNA hsa-miR-25 PIGT miRanda miRanda
9061 chr20 44048200 44048200 1 + C T SKCM 44048199 + 44048179 44048219 41 GTTCCACACCAGCTACCACTCCCAGGCAGTGCATATCCGCC GTTCCACACCAGCTACCACTCTCAGGCAGTGCATATCCGCC < 41bp 0.517390696119734 0.745132843794644 0.06782189 0.030755848 prediction 0.455484295349821 Functional Gain - PIGT ENSG00000124155 CDS Human protein_coding chr20:44048199 chr20:44048200 synonymous SNV . 0 22 hm5C_associated_SNPs_116177 0 0 1 2 44048191 44048215 mRNA hsa-miR-367 PIGT miRanda miRanda
9062 chr22 40343171 40343171 1 + A G UCEC 40343168 + 40343148 40343188 41 GTGAGGATGAACTGAGCTTTCACACTGGAGATGTTTTGAAG GTGAGGATGAACTGAGCTTTCACGCTGGAGATGTTTTGAAG < 41bp 0.491388447217859 0.727645871377726 0.2552907 0.32695773 prediction 0.455291742755452 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40343168 chr22:40343171 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_116219 0 0 1 2 40343154 40343176 mRNA hsa-miR-199a-5p GRAP2 miRanda miRanda
9063 chr22 40343171 40343171 1 + A G UCEC 40343168 + 40343148 40343188 41 GTGAGGATGAACTGAGCTTTCACACTGGAGATGTTTTGAAG GTGAGGATGAACTGAGCTTTCACGCTGGAGATGTTTTGAAG < 41bp 0.491388447217859 0.727645871377726 0.2552907 0.32695773 prediction 0.455291742755452 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40343168 chr22:40343171 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_116219 0 0 1 2 40343154 40343176 mRNA hsa-miR-199b-5p GRAP2 miRanda miRanda
9064 chr4 74274465 74274465 1 + C T SKCM 74274464 + 74274444 74274484 41 ACCTCCCCCGATTGGTGAGACCAGAGGTTGATGTGATGTGC ACCTCCCCCGATTGGTGAGACTAGAGGTTGATGTGATGTGC < 41bp 0.544445250787884 0.772038232647554 0.18564308 0.051477432 prediction 0.455185963719341 Functional Gain - ALB ENSG00000163631 CDS Human protein_coding chr4:74274464 chr4:74274465 nonsynonymous SNV 0.060 3 22 hm5C_associated_SNPs_116243 0 0 1 4 74274465 74274489 mRNA hsa-miR-148a ALB miRanda miRanda
9065 chr4 74274465 74274465 1 + C T SKCM 74274464 + 74274444 74274484 41 ACCTCCCCCGATTGGTGAGACCAGAGGTTGATGTGATGTGC ACCTCCCCCGATTGGTGAGACTAGAGGTTGATGTGATGTGC < 41bp 0.544445250787884 0.772038232647554 0.18564308 0.051477432 prediction 0.455185963719341 Functional Gain - ALB ENSG00000163631 CDS Human protein_coding chr4:74274464 chr4:74274465 nonsynonymous SNV 0.060 3 22 hm5C_associated_SNPs_116243 0 0 1 4 74274465 74274488 mRNA hsa-miR-301a ALB miRanda miRanda
9066 chr4 74274465 74274465 1 + C T SKCM 74274464 + 74274444 74274484 41 ACCTCCCCCGATTGGTGAGACCAGAGGTTGATGTGATGTGC ACCTCCCCCGATTGGTGAGACTAGAGGTTGATGTGATGTGC < 41bp 0.544445250787884 0.772038232647554 0.18564308 0.051477432 prediction 0.455185963719341 Functional Gain - ALB ENSG00000163631 CDS Human protein_coding chr4:74274464 chr4:74274465 nonsynonymous SNV 0.060 3 22 hm5C_associated_SNPs_116243 0 0 1 4 74274465 74274489 mRNA hsa-miR-148b ALB miRanda miRanda
9067 chr4 74274465 74274465 1 + C T SKCM 74274464 + 74274444 74274484 41 ACCTCCCCCGATTGGTGAGACCAGAGGTTGATGTGATGTGC ACCTCCCCCGATTGGTGAGACTAGAGGTTGATGTGATGTGC < 41bp 0.544445250787884 0.772038232647554 0.18564308 0.051477432 prediction 0.455185963719341 Functional Gain - ALB ENSG00000163631 CDS Human protein_coding chr4:74274464 chr4:74274465 nonsynonymous SNV 0.060 3 22 hm5C_associated_SNPs_116243 0 0 1 4 74274465 74274488 mRNA hsa-miR-301b ALB miRanda miRanda
9068 chr7 137776536 137776536 1 + C A LUAD 137776535 + 137776515 137776555 41 TATGGGCTACAAATCATGTCCCAGAGATGGTCCGCCCAACC TATGGGCTACAAATCATGTCCAAGAGATGGTCCGCCCAACC < 41bp 0.477357786299705 0.72758331663774 0.22964996 0.22018942 prediction 0.45516663327548 Functional Gain - AKR1D1 ENSG00000122787 CDS Human protein_coding chr7:137776535 chr7:137776536 nonsynonymous SNV 0.012 4 22 hm5C_associated_SNPs_116251 0 0 1 2 137776519 137776541 mRNA hsa-miR-330-5p AKR1D1 miRanda miRanda
9069 chr7 137776536 137776536 1 + C A LUAD 137776535 + 137776515 137776555 41 TATGGGCTACAAATCATGTCCCAGAGATGGTCCGCCCAACC TATGGGCTACAAATCATGTCCAAGAGATGGTCCGCCCAACC < 41bp 0.477357786299705 0.72758331663774 0.22964996 0.22018942 prediction 0.45516663327548 Functional Gain - AKR1D1 ENSG00000122787 CDS Human protein_coding chr7:137776535 chr7:137776536 nonsynonymous SNV 0.012 4 22 hm5C_associated_SNPs_116251 0 0 1 2 137776522 137776541 mRNA hsa-miR-326 AKR1D1 miRanda miRanda
9070 chr9 115234395 115234395 1 + T G rs117134091 115234392 + 115234372 115234412 41 AAGTGAACTTAAAAATAGGACAGTTTCAACAAGTCAGGAGA AAGTGAACTTAAAAATAGGACAGGTTCAACAAGTCAGGAGA < 41bp 0.400514897289148 0.727557553136715 0.118908405 0.31223357 prediction 0.455115106273431 Functional Gain - HSDL2 ENSG00000119471 UTR3 Human protein_coding chr9:115234392 chr9:115234395 . . 0 24 hm5C_associated_SNPs_116262 0 0 1 1 115234384 115234403 mRNA hsa-miR-653 HSDL2 miRanda miRanda
9071 chr20 39721181 39721181 1 + C A COAD 39721180 + 39721160 39721200 41 ACATAAAGGTCCAGTATTTGCCCCACCATATGAGCCTCTTC ACATAAAGGTCCAGTATTTGCACCACCATATGAGCCTCTTC < 41bp 0.557036079107055 0.78459242185672 0.017587036 0.020753145 prediction 0.455112685499331 Functional Gain - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721180 chr20:39721181 synonymous SNV . 0 22 hm5C_associated_SNPs_116263 0 0 1 3 39721180 39721202 mRNA hsa-miR-7 TOP1 miRanda miRanda
9072 chr20 39721181 39721181 1 + C A COAD 39721180 + 39721160 39721200 41 ACATAAAGGTCCAGTATTTGCCCCACCATATGAGCCTCTTC ACATAAAGGTCCAGTATTTGCACCACCATATGAGCCTCTTC < 41bp 0.557036079107055 0.78459242185672 0.017587036 0.020753145 prediction 0.455112685499331 Functional Gain - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721180 chr20:39721181 synonymous SNV . 0 22 hm5C_associated_SNPs_116263 0 0 1 3 39721177 39721198 mRNA hsa-miR-485-5p TOP1 miRanda miRanda
9073 chr20 39721181 39721181 1 + C A COAD 39721180 + 39721160 39721200 41 ACATAAAGGTCCAGTATTTGCCCCACCATATGAGCCTCTTC ACATAAAGGTCCAGTATTTGCACCACCATATGAGCCTCTTC < 41bp 0.557036079107055 0.78459242185672 0.017587036 0.020753145 prediction 0.455112685499331 Functional Gain - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721180 chr20:39721181 synonymous SNV . 0 22 hm5C_associated_SNPs_116263 0 0 1 3 39721165 39721186 mRNA hsa-miR-491-5p TOP1 miRanda miRanda
9074 chr11 134188628 134188628 1 + C T SKCM 134188627 + 134188607 134188647 41 TTCCTGGAGTTTGGCTTCATCCAGAAGACAATGAGGTATGT TTCCTGGAGTTTGGCTTCATCTAGAAGACAATGAGGTATGT < 41bp 0.574807534456382 0.802331722527529 0.36723542 0.24762753 prediction 0.455048376142293 Functional Gain - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134188627 chr11:134188628 nonsynonymous SNV 0.595 2 22 hm5C_associated_SNPs_116275 0 0 0 1 134188625 134188641 mRNA hsa-miR-875-5p GLB1L3 miRanda miRanda
9075 chr17 7162177 7162177 1 + T C UCEC 7162175 + 7162155 7162195 41 CAACTCATTTGACCTTTAACCTTCACCTGTCCAAGAAAGAG CAACTCATTTGACCTTTAACCTCCACCTGTCCAAGAAAGAG < 41bp 0.444406216648805 0.727487918968408 0.020629227 0.75343585 prediction 0.454975837936815 Functional Gain - ELP5 ENSG00000170291 CDS Human protein_coding chr17:7162175 chr17:7162177 synonymous SNV . 0 23 hm5C_associated_SNPs_116293 0 0 1 1 7162162 7162184 mRNA hsa-miR-125a-3p C17orf81 miRanda miRanda
9076 chr3 97167454 97167454 1 + C T UCEC 97167453 + 97167433 97167473 41 TCTTCCACAAGGTCCAAAGCCCCCAGTGTCATCATCACAGG TCTTCCACAAGGTCCAAAGCCTCCAGTGTCATCATCACAGG < 41bp 0.556023546098113 0.783478703709905 0.13460746 0.9473982 prediction 0.454910315223586 Functional Gain - EPHA6 ENSG00000080224 CDS Human protein_coding chr3:97167453 chr3:97167454 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_116307 0 0 0 1 97167443 97167465 mRNA hsa-miR-425 EPHA6 miRanda miRanda
9077 chr8 91031161 91031161 1 + C T COAD 91031160 + 91031140 91031180 41 GATGGATGTTTTGAAAGCTACCGCAGAACAAATTTCTTCTC GATGGATGTTTTGAAAGCTACTGCAGAACAAATTTCTTCTC < 41bp 0.471630167044561 0.727421928528615 0.08280483 0.13687491 prediction 0.454843857057229 Functional Gain - DECR1 ENSG00000104325 CDS Human protein_coding chr8:91031160 chr8:91031161 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_116324 0 0 1 1 91031147 91031168 mRNA hsa-miR-544 DECR1 miRanda miRanda
9078 chr19 16613940 16613940 1 + A G UCEC 16613937 + 16613917 16613957 41 ACTCTCCAGCGCAAAGCCTTCTCAGACATCACACCTGCCAA ACTCTCCAGCGCAAAGCCTTCTCGGACATCACACCTGCCAA < 41bp 0.542754047391686 0.770076639227395 0.02976939 0.06006208 prediction 0.454645183671419 Functional Gain - C19orf44 ENSG00000105072 CDS Human protein_coding chr19:16613937 chr19:16613940 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_116373 0 0 0 3 16613934 16613956 mRNA hsa-miR-34c-5p C19orf44 miRanda miRanda
9079 chr19 16613940 16613940 1 + A G UCEC 16613937 + 16613917 16613957 41 ACTCTCCAGCGCAAAGCCTTCTCAGACATCACACCTGCCAA ACTCTCCAGCGCAAAGCCTTCTCGGACATCACACCTGCCAA < 41bp 0.542754047391686 0.770076639227395 0.02976939 0.06006208 prediction 0.454645183671419 Functional Gain - C19orf44 ENSG00000105072 CDS Human protein_coding chr19:16613937 chr19:16613940 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_116373 0 0 0 3 16613934 16613956 mRNA hsa-miR-449a C19orf44 miRanda miRanda
9080 chr19 16613940 16613940 1 + A G UCEC 16613937 + 16613917 16613957 41 ACTCTCCAGCGCAAAGCCTTCTCAGACATCACACCTGCCAA ACTCTCCAGCGCAAAGCCTTCTCGGACATCACACCTGCCAA < 41bp 0.542754047391686 0.770076639227395 0.02976939 0.06006208 prediction 0.454645183671419 Functional Gain - C19orf44 ENSG00000105072 CDS Human protein_coding chr19:16613937 chr19:16613940 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_116373 0 0 0 3 16613934 16613956 mRNA hsa-miR-449b C19orf44 miRanda miRanda
9081 chrX 49023585 49023585 1 + C G rs370026551 49023581 + 49023561 49023601 41 CCGTACATGGTGAAGAACTGCAGCCGGGCTTGTGTGCACAC CCGTACATGGTGAAGAACTGCAGCGGGGCTTGTGTGCACAC < 41bp 0.581794918035819 0.808973105539593 0.19295976 0.351003 prediction 0.454356375007548 Functional Gain - MAGIX ENSG00000017621 UTR3 Human other chrX:49023581 chrX:49023585 . . 0 25 hm5C_associated_SNPs_116430 0 0 0 1 49023564 49023586 mRNA hsa-miR-24 MAGIX miRanda miRanda
9082 chr17 7762832 7762832 1 + C T rs62059715 7762831 + 7762811 7762851 41 ACCCTGGAAGAGAATGGGATCCGGGATGAGGAGGAAGAATT ACCCTGGAAGAGAATGGGATCTGGGATGAGGAGGAAGAATT < 41bp 0.502825099506942 0.729924007427045 0.7738239 0.3927181 prediction 0.454197815840206 Functional Gain - CYB5D1 ENSG00000182224 CDS Human protein_coding chr17:7762831 chr17:7762832 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_116463 0 0 1 1 7762811 7762834 mRNA hsa-miR-127-3p CYB5D1 miRanda miRanda
9083 chr8 24207459 24207459 1 + C A SKCM 24207458 + 24207438 24207478 41 GGTAATCCGGCACCAGAGCTCCAGAGAAAAGCAGAAGAAAG GGTAATCCGGCACCAGAGCTCAAGAGAAAAGCAGAAGAAAG < 41bp 0.589226605178726 0.816214491244084 0.90005684 0.9040118 prediction 0.453975772130716 Functional Gain - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24207458 chr8:24207459 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_116516 0 0 0 2 24207440 24207462 mRNA hsa-miR-378 ADAM28 miRanda miRanda
9084 chr8 24207459 24207459 1 + C A SKCM 24207458 + 24207438 24207478 41 GGTAATCCGGCACCAGAGCTCCAGAGAAAAGCAGAAGAAAG GGTAATCCGGCACCAGAGCTCAAGAGAAAAGCAGAAGAAAG < 41bp 0.589226605178726 0.816214491244084 0.90005684 0.9040118 prediction 0.453975772130716 Functional Gain - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24207458 chr8:24207459 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_116516 0 0 0 2 24207439 24207462 mRNA hsa-miR-422a ADAM28 miRanda miRanda
9085 chr4 115597177 115597177 1 + T C STAD 115597175 + 115597155 115597195 41 ATTGGATAGATTATATTATTCGTCACAATGGAGCCCATCAC ATTGGATAGATTATATTATTCGCCACAATGGAGCCCATCAC < 41bp 0.611034832321788 0.837927518798609 0.04275918 0.07107562 prediction 0.453785372953642 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115597175 chr4:115597177 synonymous SNV . 0 23 hm5C_associated_SNPs_116560 0 0 0 2 115597166 115597188 mRNA hsa-miR-136 UGT8 miRanda miRanda
9086 chr4 115597177 115597177 1 + T C STAD 115597175 + 115597155 115597195 41 ATTGGATAGATTATATTATTCGTCACAATGGAGCCCATCAC ATTGGATAGATTATATTATTCGCCACAATGGAGCCCATCAC < 41bp 0.611034832321788 0.837927518798609 0.04275918 0.07107562 prediction 0.453785372953642 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115597175 chr4:115597177 synonymous SNV . 0 23 hm5C_associated_SNPs_116560 0 0 0 2 115597162 115597183 mRNA hsa-miR-758 UGT8 miRanda miRanda
9087 chr9 75431120 75431120 1 + T C ESCA 75431118 + 75431098 75431138 41 GCTCTGATCTTCAACCAAGGCATGATCTGGTAGGCCAGCTG GCTCTGATCTTCAACCAAGGCACGATCTGGTAGGCCAGCTG < 41bp 0.618748914965841 0.845500377084931 0.15246254 0.15614921 prediction 0.453502924238181 Functional Gain - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75431118 chr9:75431120 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_116617 0 0 0 1 75431110 75431126 mRNA hsa-miR-383 TMC1 miRanda miRanda
9088 chr11 47594369 47594369 1 + T G rs140783575 47594366 + 47594346 47594386 41 GATTCAGGGAAGGGCTGAGGCACTGCCTTTCTAGTATGTGC GATTCAGGGAAGGGCTGAGGCACGGCCTTTCTAGTATGTGC < 41bp 0.373416670428832 0.726638967291476 0.03029722 0.071334004 prediction 0.453277934582952 Functional Gain - KBTBD4;PTPMT1 ENSG00000123444 UTR3 Human protein_coding chr11:47594366 chr11:47594369 . . 0 24 hm5C_associated_SNPs_116672 0 0 1 7 47594367 47594390 mRNA hsa-miR-96 PTPMT1 miRanda miRanda
9089 chr11 47594369 47594369 1 + T G rs140783575 47594366 + 47594346 47594386 41 GATTCAGGGAAGGGCTGAGGCACTGCCTTTCTAGTATGTGC GATTCAGGGAAGGGCTGAGGCACGGCCTTTCTAGTATGTGC < 41bp 0.373416670428832 0.726638967291476 0.03029722 0.071334004 prediction 0.453277934582952 Functional Gain - KBTBD4;PTPMT1 ENSG00000123444 UTR3 Human protein_coding chr11:47594366 chr11:47594369 . . 0 24 hm5C_associated_SNPs_116672 0 0 1 7 47594352 47594373 mRNA hsa-miR-34a PTPMT1 miRanda miRanda
9090 chr11 47594369 47594369 1 + T G rs140783575 47594366 + 47594346 47594386 41 GATTCAGGGAAGGGCTGAGGCACTGCCTTTCTAGTATGTGC GATTCAGGGAAGGGCTGAGGCACGGCCTTTCTAGTATGTGC < 41bp 0.373416670428832 0.726638967291476 0.03029722 0.071334004 prediction 0.453277934582952 Functional Gain - KBTBD4;PTPMT1 ENSG00000123444 UTR3 Human protein_coding chr11:47594366 chr11:47594369 . . 0 24 hm5C_associated_SNPs_116672 0 0 1 7 47594366 47594390 mRNA hsa-miR-182 PTPMT1 miRanda miRanda
9091 chr11 47594369 47594369 1 + T G rs140783575 47594366 + 47594346 47594386 41 GATTCAGGGAAGGGCTGAGGCACTGCCTTTCTAGTATGTGC GATTCAGGGAAGGGCTGAGGCACGGCCTTTCTAGTATGTGC < 41bp 0.373416670428832 0.726638967291476 0.03029722 0.071334004 prediction 0.453277934582952 Functional Gain - KBTBD4;PTPMT1 ENSG00000123444 UTR3 Human protein_coding chr11:47594366 chr11:47594369 . . 0 24 hm5C_associated_SNPs_116672 0 0 1 7 47594352 47594373 mRNA hsa-miR-34c-5p PTPMT1 miRanda miRanda
9092 chr11 47594369 47594369 1 + T G rs140783575 47594366 + 47594346 47594386 41 GATTCAGGGAAGGGCTGAGGCACTGCCTTTCTAGTATGTGC GATTCAGGGAAGGGCTGAGGCACGGCCTTTCTAGTATGTGC < 41bp 0.373416670428832 0.726638967291476 0.03029722 0.071334004 prediction 0.453277934582952 Functional Gain - KBTBD4;PTPMT1 ENSG00000123444 UTR3 Human protein_coding chr11:47594366 chr11:47594369 . . 0 24 hm5C_associated_SNPs_116672 0 0 1 7 47594352 47594373 mRNA hsa-miR-449a PTPMT1 miRanda miRanda
9093 chr11 47594369 47594369 1 + T G rs140783575 47594366 + 47594346 47594386 41 GATTCAGGGAAGGGCTGAGGCACTGCCTTTCTAGTATGTGC GATTCAGGGAAGGGCTGAGGCACGGCCTTTCTAGTATGTGC < 41bp 0.373416670428832 0.726638967291476 0.03029722 0.071334004 prediction 0.453277934582952 Functional Gain - KBTBD4;PTPMT1 ENSG00000123444 UTR3 Human protein_coding chr11:47594366 chr11:47594369 . . 0 24 hm5C_associated_SNPs_116672 0 0 1 7 47594352 47594373 mRNA hsa-miR-449b PTPMT1 miRanda miRanda
9094 chr11 47594369 47594369 1 + T G rs140783575 47594366 + 47594346 47594386 41 GATTCAGGGAAGGGCTGAGGCACTGCCTTTCTAGTATGTGC GATTCAGGGAAGGGCTGAGGCACGGCCTTTCTAGTATGTGC < 41bp 0.373416670428832 0.726638967291476 0.03029722 0.071334004 prediction 0.453277934582952 Functional Gain - KBTBD4;PTPMT1 ENSG00000123444 UTR3 Human protein_coding chr11:47594366 chr11:47594369 . . 0 24 hm5C_associated_SNPs_116672 0 0 1 7 47594365 47594390 mRNA hsa-miR-1271 PTPMT1 miRanda miRanda
9095 chr20 34099477 34099477 1 + A G rs200151359 34099474 + 34099454 34099494 41 AGCAGCCACAGCCAGGAGCACACAGACAGAAGACTGTGTCA AGCAGCCACAGCCAGGAGCACACGGACAGAAGACTGTGTCA < 41bp 0.536654652494175 0.763106576757889 0.1407268 0.5136488 prediction 0.452903848527427 Functional Gain - CEP250 ENSG00000126001 UTR3 Human protein_coding chr20:34099474 chr20:34099477 . . 0 24 hm5C_associated_SNPs_116742 0 0 1 1 34099476 34099496 mRNA hsa-miR-425 CEP250 miRanda miRanda
9096 chr7 56008407 56008407 1 + C G rs61222085 56008403 + 56008383 56008423 41 GAGATCATGCCACTGTACTCCAGCCTGGGCAACAGAGCAAG GAGATCATGCCACTGTACTCCAGCGTGGGCAACAGAGCAAG < 41bp 0.493985920519826 0.726405366328822 0.17418993 0.2610411 prediction 0.452810732657644 Functional Gain - ZNF713 ENSG00000178665 UTR3 Human protein_coding chr7:56008403 chr7:56008407 . . 0 25 hm5C_associated_SNPs_116768 0 0 0 1 56008406 56008426 mRNA hsa-miR-431 ZNF713 miRanda miRanda
9097 chr13 50206021 50206021 1 + A G rs117282433 50206018 + 50205998 50206038 41 CAAATATCATCTGGACATGTCACAATGGATCGCGGATCCTT CAAATATCATCTGGACATGTCACGATGGATCGCGGATCCTT < 41bp 0.49423358493753 0.726373620037648 0.025513768 0.06908217 prediction 0.452747240075296 Functional Gain - ARL11 ENSG00000152213 UTR3 Human protein_coding chr13:50206018 chr13:50206021 . . 0 24 hm5C_associated_SNPs_116782 0 0 0 1 50206003 50206023 mRNA hsa-miR-758 ARL11 miRanda miRanda
9098 chr6 32612559 32612559 1 + T G rs9273100 32612556 + 32612536 32612576 41 ATTGGTAAGAGAACTCTTAGCACTAGAAGTTGTAATATTTG ATTGGTAAGAGAACTCTTAGCACGAGAAGTTGTAATATTTG < 41bp 0.38845469778824 0.726364294081789 0.052145094 0.15398839 prediction 0.452728588163577 Functional Gain - HLA-DQA1;HLA-DQB1 ENSG00000196735;ENSG00000179344 intergenic Human other chr6:32612556 chr6:32612559 . . 0 24 hm5C_associated_SNPs_116790 0 0 0 2 32612537 32612560 mRNA hsa-miR-301a HLA-DQA1 miRanda miRanda
9099 chr6 32612559 32612559 1 + T G rs9273100 32612556 + 32612536 32612576 41 ATTGGTAAGAGAACTCTTAGCACTAGAAGTTGTAATATTTG ATTGGTAAGAGAACTCTTAGCACGAGAAGTTGTAATATTTG < 41bp 0.38845469778824 0.726364294081789 0.052145094 0.15398839 prediction 0.452728588163577 Functional Gain - HLA-DQA1;HLA-DQB1 ENSG00000196735;ENSG00000179344 intergenic Human other chr6:32612556 chr6:32612559 . . 0 24 hm5C_associated_SNPs_116790 0 0 0 2 32612537 32612560 mRNA hsa-miR-454 HLA-DQA1 miRanda miRanda
9100 chr12 111057747 111057747 1 + A G rs140230455 111057744 + 111057724 111057764 41 TTCAGTGTCTTTTCTGCCTGCTCAGTTCCAGTTGTCACGTA TTCAGTGTCTTTTCTGCCTGCTCGGTTCCAGTTGTCACGTA < 41bp 0.528501120842118 0.754677414068175 0.12141526 0.21939138 prediction 0.452352586452114 Functional Gain - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111057744 chr12:111057747 synonymous SNV . 0 24 hm5C_associated_SNPs_116878 3 0 1 2 111057733 111057755 mRNA hsa-miR-378 TCTN1 miRanda miRanda
9101 chr12 111057747 111057747 1 + A G rs140230455 111057744 + 111057724 111057764 41 TTCAGTGTCTTTTCTGCCTGCTCAGTTCCAGTTGTCACGTA TTCAGTGTCTTTTCTGCCTGCTCGGTTCCAGTTGTCACGTA < 41bp 0.528501120842118 0.754677414068175 0.12141526 0.21939138 prediction 0.452352586452114 Functional Gain - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111057744 chr12:111057747 synonymous SNV . 0 24 hm5C_associated_SNPs_116878 3 0 1 2 111057732 111057755 mRNA hsa-miR-422a TCTN1 miRanda miRanda
9102 chr14 77294698 77294698 1 + C T BLCA 77294697 + 77294677 77294717 41 GCTCTACTGTGAGGCCGAATCCCCGCCGACTGTTGAAAAAG GCTCTACTGTGAGGCCGAATCTCCGCCGACTGTTGAAAAAG < 41bp 0.466837119238631 0.725930277541876 0.20891002 0.4140441 prediction 0.451860555083751 Functional Gain - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77294697 chr14:77294698 synonymous SNV . 0 22 hm5C_associated_SNPs_116986 0 0 0 3 77294689 77294711 mRNA hsa-miR-212 C14orf166B miRanda miRanda
9103 chr14 77294698 77294698 1 + C T BLCA 77294697 + 77294677 77294717 41 GCTCTACTGTGAGGCCGAATCCCCGCCGACTGTTGAAAAAG GCTCTACTGTGAGGCCGAATCTCCGCCGACTGTTGAAAAAG < 41bp 0.466837119238631 0.725930277541876 0.20891002 0.4140441 prediction 0.451860555083751 Functional Gain - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77294697 chr14:77294698 synonymous SNV . 0 22 hm5C_associated_SNPs_116986 0 0 0 3 77294690 77294711 mRNA hsa-miR-132 C14orf166B miRanda miRanda
9104 chr14 77294698 77294698 1 + C T BLCA 77294697 + 77294677 77294717 41 GCTCTACTGTGAGGCCGAATCCCCGCCGACTGTTGAAAAAG GCTCTACTGTGAGGCCGAATCTCCGCCGACTGTTGAAAAAG < 41bp 0.466837119238631 0.725930277541876 0.20891002 0.4140441 prediction 0.451860555083751 Functional Gain - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77294697 chr14:77294698 synonymous SNV . 0 22 hm5C_associated_SNPs_116986 0 0 0 3 77294688 77294713 mRNA hsa-miR-421 C14orf166B miRanda miRanda
9105 chr5 137684076 137684076 1 + A G rs182881841 137684073 + 137684053 137684093 41 AGGGCTGGCACCAGTGGAAACACATACTGAAGCTGCCACCA AGGGCTGGCACCAGTGGAAACACGTACTGAAGCTGCCACCA < 41bp 0.490636726779388 0.7259095069485 0.078430176 0.14168325 prediction 0.451819013896999 Functional Gain - FAM53C ENSG00000249971 ncRNA_intronic Human antisense chr5:137684073 chr5:137684076 . . 0 24 hm5C_associated_SNPs_116991 0 0 1 1 137684058 137684080 mRNA hsa-miR-142-3p FAM53C miRanda miRanda
9106 chr21 43136639 43136639 1 + C A rs4919933 43136635 + 43136615 43136655 41 GCAGATGTGATTCGAGTCTTCCAGCAACACCACCTCACTCT GCAGATGTGATTCGAGTCTTCCAGAAACACCACCTCACTCT < 41bp 0.367825299947023 0.725866144017153 0.18814254 0.56538963 prediction 0.451732288034306 Functional Gain - LINC00112 ENSG00000232401 ncRNA_exonic Human antisense chr21:43136635 chr21:43136639 . . 0 25 hm5C_associated_SNPs_117020 0 0 0 1 43136631 43136657 mRNA hsa-miR-125a-3p NCRNA00112 miRanda miRanda
9107 chr3 88191480 88191480 1 + T G rs185941098 88191478 + 88191458 88191498 41 CAGTGCTTTGCTAATAAGCTCTTGATAGAACCTCCCACTAA CAGTGCTTTGCTAATAAGCTCTGGATAGAACCTCCCACTAA < 41bp 0.626254746395062 0.852086594006491 0.075075775 0.19681889 prediction 0.451663695222858 Functional Gain - ZNF654 ENSG00000175105 UTR3 Human protein_coding chr3:88191478 chr3:88191480 . . 0 23 hm5C_associated_SNPs_117033 0 0 0 1 88191458 88191482 mRNA hsa-miR-335 ZNF654 miRanda miRanda
9108 chr22 47189485 47189485 1 + C A LIHC 47189481 + 47189461 47189501 41 CCAGGAGTTTGAGAGCAATACCAGCGATGCCTGGGACGCTG CCAGGAGTTTGAGAGCAATACCAGAGATGCCTGGGACGCTG < 41bp 0.337973885311204 0.725669523970694 0.8586961 0.8970148 prediction 0.451339047941387 Functional Gain - TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47189481 chr22:47189485 nonsynonymous SNV 0.912 4 25 hm5C_associated_SNPs_117113 0 0 1 1 47189473 47189495 mRNA hsa-miR-338-3p TBC1D22A miRanda miRanda
9109 chr7 44080697 44080697 1 + C G rs569523788 44080696 + 44080676 44080716 41 TCCCGGCCACCTGGGGACCACCGCAGGTCACATTGATCCTG TCCCGGCCACCTGGGGACCACGGCAGGTCACATTGATCCTG < 41bp 0.652687257781341 0.878327397760834 0.42671192 0.5256739 prediction 0.451280279958985 Functional Gain - LINC00957 ENSG00000235314 ncRNA_exonic Human lincRNA chr7:44080696 chr7:44080697 . . 0 22 hm5C_associated_SNPs_117128 0 0 0 2 44080694 44080701 mRNA hsa-miR-26a FLJ35390 miRanda miRanda
9110 chr7 44080697 44080697 1 + C G rs569523788 44080696 + 44080676 44080716 41 TCCCGGCCACCTGGGGACCACCGCAGGTCACATTGATCCTG TCCCGGCCACCTGGGGACCACGGCAGGTCACATTGATCCTG < 41bp 0.652687257781341 0.878327397760834 0.42671192 0.5256739 prediction 0.451280279958985 Functional Gain - LINC00957 ENSG00000235314 ncRNA_exonic Human lincRNA chr7:44080696 chr7:44080697 . . 0 22 hm5C_associated_SNPs_117128 0 0 0 2 44080695 44080701 mRNA hsa-miR-26b FLJ35390 miRanda miRanda
9111 chr4 20620642 20620642 1 + C G rs186108791 20620638 + 20620618 20620658 41 AGGTGTGTGTCCTAAACACACTCCCGGCAGCTCTGTCTTTG AGGTGTGTGTCCTAAACACACTCCGGGCAGCTCTGTCTTTG < 41bp 0.438435431378806 0.725609108186335 0.03341621 0.07949534 prediction 0.451218216372669 Functional Gain - SLIT2 ENSG00000145147 UTR3 Human protein_coding chr4:20620638 chr4:20620642 . . 0 25 hm5C_associated_SNPs_117142 0 0 1 2 20620633 20620650 mRNA hsa-miR-22 SLIT2 miRanda miRanda
9112 chr4 20620642 20620642 1 + C G rs186108791 20620638 + 20620618 20620658 41 AGGTGTGTGTCCTAAACACACTCCCGGCAGCTCTGTCTTTG AGGTGTGTGTCCTAAACACACTCCGGGCAGCTCTGTCTTTG < 41bp 0.438435431378806 0.725609108186335 0.03341621 0.07949534 prediction 0.451218216372669 Functional Gain - SLIT2 ENSG00000145147 UTR3 Human protein_coding chr4:20620638 chr4:20620642 . . 0 25 hm5C_associated_SNPs_117142 0 0 1 2 20620633 20620642 mRNA hsa-miR-122 SLIT2 miRanda miRanda
9113 chr3 49753345 49753345 1 + C A COAD 49753341 + 49753321 49753361 41 ACCTGCTTTGACCTCTCGGTCAGCCTGCTGCGTGTCTTGGA ACCTGCTTTGACCTCTCGGTCAGCATGCTGCGTGTCTTGGA < 41bp 0.306202229021876 0.72558505488524 0.27416492 0.29424345 prediction 0.451170109770481 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49753341 chr3:49753345 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_117152 0 0 1 1 49753327 49753351 mRNA hsa-miR-214 RNF123 miRanda miRanda
9114 chr9 35440223 35440223 1 + A G rs572726773 35440220 + 35440200 35440240 41 GCCCTCTCTTCCCAGCTTCCCAGAGATAATCAACCTCTTGG GCCCTCTCTTCCCAGCTTCCCAGGGATAATCAACCTCTTGG < 41bp 0.508105755015297 0.733674013912408 0.9224936 0.9259623 prediction 0.451136517794221 Functional Gain - ATP8B5P ENSG00000179766 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:35440220 chr9:35440223 . . 0 24 hm5C_associated_SNPs_117162 0 0 0 2 35440202 35440225 mRNA hsa-miR-330-5p LOC158381 miRanda miRanda
9115 chr9 35440223 35440223 1 + A G rs572726773 35440220 + 35440200 35440240 41 GCCCTCTCTTCCCAGCTTCCCAGAGATAATCAACCTCTTGG GCCCTCTCTTCCCAGCTTCCCAGGGATAATCAACCTCTTGG < 41bp 0.508105755015297 0.733674013912408 0.9224936 0.9259623 prediction 0.451136517794221 Functional Gain - ATP8B5P ENSG00000179766 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:35440220 chr9:35440223 . . 0 24 hm5C_associated_SNPs_117162 0 0 0 2 35440206 35440225 mRNA hsa-miR-326 LOC158381 miRanda miRanda
9116 chr19 17002804 17002804 1 + T G rs113425382 17002801 + 17002781 17002821 41 TGGACTTCTGGCCTGCAGAACTGTGAGACAATAAACTCTCA TGGACTTCTGGCCTGCAGAACTGGGAGACAATAAACTCTCA < 41bp 0.453348234185173 0.725458633769283 0.15833443 0.3616727 prediction 0.450917267538567 Functional Gain - F2RL3 ENSG00000127533 UTR3 Human protein_coding chr19:17002801 chr19:17002804 . . 0 24 hm5C_associated_SNPs_117209 0 0 0 3 17002780 17002807 mRNA hsa-miR-27a F2RL3 miRanda miRanda
9117 chr19 17002804 17002804 1 + T G rs113425382 17002801 + 17002781 17002821 41 TGGACTTCTGGCCTGCAGAACTGTGAGACAATAAACTCTCA TGGACTTCTGGCCTGCAGAACTGGGAGACAATAAACTCTCA < 41bp 0.453348234185173 0.725458633769283 0.15833443 0.3616727 prediction 0.450917267538567 Functional Gain - F2RL3 ENSG00000127533 UTR3 Human protein_coding chr19:17002801 chr19:17002804 . . 0 24 hm5C_associated_SNPs_117209 0 0 0 3 17002787 17002807 mRNA hsa-miR-27b F2RL3 miRanda miRanda
9118 chr19 17002804 17002804 1 + T G rs113425382 17002801 + 17002781 17002821 41 TGGACTTCTGGCCTGCAGAACTGTGAGACAATAAACTCTCA TGGACTTCTGGCCTGCAGAACTGGGAGACAATAAACTCTCA < 41bp 0.453348234185173 0.725458633769283 0.15833443 0.3616727 prediction 0.450917267538567 Functional Gain - F2RL3 ENSG00000127533 UTR3 Human protein_coding chr19:17002801 chr19:17002804 . . 0 24 hm5C_associated_SNPs_117209 0 0 0 3 17002780 17002807 mRNA hsa-miR-145 F2RL3 miRanda miRanda
9119 chr15 20489435 20489435 1 + C A UCEC 20489434 + 20489414 20489454 41 ACTCAAGTGTCACTGAAGGACCAGATCACCAGTGGAAAACA ACTCAAGTGTCACTGAAGGACAAGATCACCAGTGGAAAACA < 41bp 0.568112252363888 0.793309685814703 0.11162594 0.09530637 prediction 0.45039486690163 Functional Gain - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20489434 chr15:20489435 . . 0 22 hm5C_associated_SNPs_117328 0 0 0 2 20489421 20489443 mRNA hsa-miR-134 LOC646096 miRanda miRanda
9120 chr15 20489435 20489435 1 + C A UCEC 20489434 + 20489414 20489454 41 ACTCAAGTGTCACTGAAGGACCAGATCACCAGTGGAAAACA ACTCAAGTGTCACTGAAGGACAAGATCACCAGTGGAAAACA < 41bp 0.568112252363888 0.793309685814703 0.11162594 0.09530637 prediction 0.45039486690163 Functional Gain - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20489434 chr15:20489435 . . 0 22 hm5C_associated_SNPs_117328 0 0 0 2 20489434 20489461 mRNA hsa-miR-382 LOC646096 miRanda miRanda
9121 chr17 30807671 30807671 1 + C G rs148367648 30807670 + 30807650 30807690 41 GTGAGTGCTGGCTTCAGGACCCCAGGGCTGGGCAGCTCTGT GTGAGTGCTGGCTTCAGGACCGCAGGGCTGGGCAGCTCTGT < 41bp 0.415942502096972 0.725114675743418 0.07658273 0.40960264 prediction 0.450229351486837 Functional Gain - PSMD11 ENSG00000108671 UTR3 Human protein_coding chr17:30807670 chr17:30807671 . . 0 22 hm5C_associated_SNPs_117354 0 0 1 1 30807665 30807687 mRNA hsa-miR-22 PSMD11 miRanda miRanda
9122 chr19 3204576 3204576 1 + C T rs145485457 3204575 + 3204555 3204595 41 GCGCCTCCGGCTGCAGGTGGCCGCGCACCAGTTCCCTGAGG GCGCCTCCGGCTGCAGGTGGCTGCGCACCAGTTCCCTGAGG < 41bp 0.520657773264319 0.745623005318368 0.2092492 0.22851443 prediction 0.449930464108099 Functional Gain - NCLN ENSG00000125912 CDS Human protein_coding chr19:3204575 chr19:3204576 synonymous SNV . 0 22 hm5C_associated_SNPs_117423 0 0 1 1 3204572 3204593 mRNA hsa-miR-873 NCLN miRanda miRanda
9123 chr1 158325668 158325668 1 + T A LUAD 158325664 + 158325644 158325684 41 GCCCCAGTCCTGGCCCTGGCCGTCTGCAGCTTGTGTGCCAT GCCCCAGTCCTGGCCCTGGCCGTCAGCAGCTTGTGTGCCAT < 41bp 0.61872276400804 0.843687144717714 0.33605567 0.25979212 prediction 0.449928761419348 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325664 chr1:158325668 nonsynonymous SNV 0.763 3 25 hm5C_associated_SNPs_117425 0 0 0 1 158325666 158325685 mRNA hsa-miR-183 CD1E miRanda miRanda
9124 chr1 28975127 28975127 1 + C G rs192651029 28975123 + 28975103 28975143 41 AGAGAAAGCAAAAAGGGCTTCTGTCGTGAGTGGCACACGTA AGAGAAAGCAAAAAGGGCTTCTGTGGTGAGTGGCACACGTA < 41bp 0.457489059711705 0.724879558401417 0.27047446 0.6044982 prediction 0.449759116802833 Functional Gain - LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975123 chr1:28975127 . . 0 25 hm5C_associated_SNPs_117460 0 0 1 2 28975112 28975132 mRNA hsa-miR-377 RNU11 miRanda miRanda
9125 chr1 28975127 28975127 1 + C G rs192651029 28975123 + 28975103 28975143 41 AGAGAAAGCAAAAAGGGCTTCTGTCGTGAGTGGCACACGTA AGAGAAAGCAAAAAGGGCTTCTGTGGTGAGTGGCACACGTA < 41bp 0.457489059711705 0.724879558401417 0.27047446 0.6044982 prediction 0.449759116802833 Functional Gain - LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975123 chr1:28975127 . . 0 25 hm5C_associated_SNPs_117460 0 0 1 2 28975112 28975133 mRNA hsa-miR-342-3p RNU11 miRanda miRanda
9126 chr3 38104270 38104270 1 + C T SKCM 38104269 + 38104249 38104289 41 CCAGCACCGATAGGAGAATTCCAGAGTACAGAGCCAGAACA CCAGCACCGATAGGAGAATTCTAGAGTACAGAGCCAGAACA < 41bp 0.48447301450821 0.724861881652096 0.34044933 0.2265313 prediction 0.449723763304193 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38104269 chr3:38104270 stopgain 0.049 0 22 hm5C_associated_SNPs_117476 0 0 0 1 38104263 38104286 mRNA hsa-miR-149 DLEC1 miRanda miRanda
9127 chr3 52825555 52825555 1 + T G CESC 52825552 + 52825532 52825572 41 GGGCAATTTTTCCACCCCATCGGTTTTGAAGTGTCTGACAT GGGCAATTTTTCCACCCCATCGGGTTTGAAGTGTCTGACAT < 41bp 0.321213831757887 0.724510440755367 0.06520128 0.774318 prediction 0.449020881510734 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52825552 chr3:52825555 synonymous SNV . 0 24 hm5C_associated_SNPs_117637 0 0 1 1 52825543 52825566 mRNA hsa-miR-181a ITIH1 miRanda miRanda
9128 chr1 150318559 150318559 1 + T C STAD 150318557 + 150318537 150318577 41 GCCAATGCTGGGCAACTGTACCTGACAGGGGTGGTGGTACT GCCAATGCTGGGCAACTGTACCCGACAGGGGTGGTGGTACT < 41bp 0.426862619408122 0.724466510090484 0.15781826 0.0996871 prediction 0.448933020180968 Functional Gain - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150318557 chr1:150318559 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_117663 0 0 1 1 150318543 150318567 mRNA hsa-miR-339-5p PRPF3 miRanda miRanda
9129 chr11 47183130 47183130 1 + C T UCEC 47183129 + 47183109 47183149 41 TGGAGACCTCTCCATCATTCCCGAAAAGTGGATGGAGAGAG TGGAGACCTCTCCATCATTCCTGAAAAGTGGATGGAGAGAG < 41bp 0.558121830301448 0.78258053471144 0.1025275 0.038250804 prediction 0.448917408819985 Functional Gain - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47183129 chr11:47183130 stopgain 0.996 1 22 hm5C_associated_SNPs_117668 0 0 1 1 47183108 47183130 mRNA hsa-miR-1 C11orf49 miRanda miRanda
9130 chr11 43923096 43923096 1 + C T rs2271815 43923095 + 43923075 43923115 41 GTGCTGCGCACACTAAAGAACCGCATTGAAGAGAACACTGG GTGCTGCGCACACTAAAGAACTGCATTGAAGAGAACACTGG < 41bp 0.584599334133259 0.809053795854827 0.023096949 0.06382054 prediction 0.448908923443136 Functional Gain - ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43923095 chr11:43923096 nonsynonymous SNV 0.714 2 22 hm5C_associated_SNPs_117670 0 0 1 2 43923094 43923116 mRNA hsa-miR-199a-5p ALKBH3 miRanda miRanda
9131 chr11 43923096 43923096 1 + C T rs2271815 43923095 + 43923075 43923115 41 GTGCTGCGCACACTAAAGAACCGCATTGAAGAGAACACTGG GTGCTGCGCACACTAAAGAACTGCATTGAAGAGAACACTGG < 41bp 0.584599334133259 0.809053795854827 0.023096949 0.06382054 prediction 0.448908923443136 Functional Gain - ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43923095 chr11:43923096 nonsynonymous SNV 0.714 2 22 hm5C_associated_SNPs_117670 0 0 1 2 43923093 43923116 mRNA hsa-miR-199b-5p ALKBH3 miRanda miRanda
9132 chr2 86344204 86344204 1 + C T SKCM 86344203 + 86344183 86344223 41 ATTTTTACTGGCAAAGAAATCCGGGGAGAATGTGGCCAAGT ATTTTTACTGGCAAAGAAATCTGGGGAGAATGTGGCCAAGT < 41bp 0.503032643906944 0.727365141636653 0.8700568 0.40002066 prediction 0.448664995459418 Functional Gain - PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86344203 chr2:86344204 synonymous SNV . 0 22 hm5C_associated_SNPs_117731 0 0 1 2 86344203 86344224 mRNA hsa-miR-193a-3p PTCD3 miRanda miRanda
9133 chr2 86344204 86344204 1 + C T SKCM 86344203 + 86344183 86344223 41 ATTTTTACTGGCAAAGAAATCCGGGGAGAATGTGGCCAAGT ATTTTTACTGGCAAAGAAATCTGGGGAGAATGTGGCCAAGT < 41bp 0.503032643906944 0.727365141636653 0.8700568 0.40002066 prediction 0.448664995459418 Functional Gain - PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86344203 chr2:86344204 synonymous SNV . 0 22 hm5C_associated_SNPs_117731 0 0 1 2 86344184 86344205 mRNA hsa-miR-876-5p PTCD3 miRanda miRanda
9134 chrX 54951467 54951467 1 + A G CESC 54951464 + 54951444 54951484 41 AGAATATGATGAATATTTCCCAGAAATCATTGAACGAGCAA AGAATATGATGAATATTTCCCAGGAATCATTGAACGAGCAA < 41bp 0.513482592814156 0.737776449054008 0.14857355 0.25821894 prediction 0.448587712479704 Functional Gain - TRO ENSG00000067445 CDS Human protein_coding chrX:54951464 chrX:54951467 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_117746 0 0 1 2 54951447 54951469 mRNA hsa-miR-330-5p TRO miRanda miRanda
9135 chrX 54951467 54951467 1 + A G CESC 54951464 + 54951444 54951484 41 AGAATATGATGAATATTTCCCAGAAATCATTGAACGAGCAA AGAATATGATGAATATTTCCCAGGAATCATTGAACGAGCAA < 41bp 0.513482592814156 0.737776449054008 0.14857355 0.25821894 prediction 0.448587712479704 Functional Gain - TRO ENSG00000067445 CDS Human protein_coding chrX:54951464 chrX:54951467 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_117746 0 0 1 2 54951450 54951469 mRNA hsa-miR-326 TRO miRanda miRanda
9136 chr22 40351868 40351868 1 + C A LUAD 40351867 + 40351847 40351887 41 TTTAAGGCGGAGCTTGGGAGCCAGGAAGGATATGTGCCCAA TTTAAGGCGGAGCTTGGGAGCAAGGAAGGATATGTGCCCAA < 41bp 0.475558885963427 0.724197877126226 0.59663624 0.8860805 prediction 0.448395754252452 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40351867 chr22:40351868 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_117796 0 0 1 1 40351849 40351871 mRNA hsa-miR-149 GRAP2 miRanda miRanda
9137 chr6 42656027 42656027 1 + C T SKCM 42656026 + 42656006 42656046 41 TGCGGATCTCTGCTGTGCTCCCAGAGTTACTGCTGCCAGAC TGCGGATCTCTGCTGTGCTCCTAGAGTTACTGCTGCCAGAC < 41bp 0.580872185174436 0.804939115461521 0.4188715 0.21246767 prediction 0.44813386057417 Functional Gain - UBR2 ENSG00000024048 CDS Human protein_coding chr6:42656026 chr6:42656027 stopgain 1.000 1 22 hm5C_associated_SNPs_117852 0 0 1 2 42656011 42656032 mRNA hsa-miR-330-5p UBR2 miRanda miRanda
9138 chr6 42656027 42656027 1 + C T SKCM 42656026 + 42656006 42656046 41 TGCGGATCTCTGCTGTGCTCCCAGAGTTACTGCTGCCAGAC TGCGGATCTCTGCTGTGCTCCTAGAGTTACTGCTGCCAGAC < 41bp 0.580872185174436 0.804939115461521 0.4188715 0.21246767 prediction 0.44813386057417 Functional Gain - UBR2 ENSG00000024048 CDS Human protein_coding chr6:42656026 chr6:42656027 stopgain 1.000 1 22 hm5C_associated_SNPs_117852 0 0 1 2 42656013 42656032 mRNA hsa-miR-326 UBR2 miRanda miRanda
9139 chrX 8434522 8434522 1 + T A rs112774168 8434518 + 8434498 8434538 41 CCAGCGGGGTGCTTGCCATTCTGATGATAATAAAATGAATG CCAGCGGGGTGCTTGCCATTCTGAAGATAATAAAATGAATG < 41bp 0.436049240137178 0.72400837309504 0.36590433 0.2304489 prediction 0.448016746190079 Functional Gain - VCX3B ENSG00000205642 UTR3 Human protein_coding chrX:8434518 chrX:8434522 . . 0 25 hm5C_associated_SNPs_117880 0 0 0 4 8434518 8434540 mRNA hsa-miR-181a VCX3B miRanda miRanda
9140 chrX 8434522 8434522 1 + T A rs112774168 8434518 + 8434498 8434538 41 CCAGCGGGGTGCTTGCCATTCTGATGATAATAAAATGAATG CCAGCGGGGTGCTTGCCATTCTGAAGATAATAAAATGAATG < 41bp 0.436049240137178 0.72400837309504 0.36590433 0.2304489 prediction 0.448016746190079 Functional Gain - VCX3B ENSG00000205642 UTR3 Human protein_coding chrX:8434518 chrX:8434522 . . 0 25 hm5C_associated_SNPs_117880 0 0 0 4 8434516 8434540 mRNA hsa-miR-181b VCX3B miRanda miRanda
9141 chrX 8434522 8434522 1 + T A rs112774168 8434518 + 8434498 8434538 41 CCAGCGGGGTGCTTGCCATTCTGATGATAATAAAATGAATG CCAGCGGGGTGCTTGCCATTCTGAAGATAATAAAATGAATG < 41bp 0.436049240137178 0.72400837309504 0.36590433 0.2304489 prediction 0.448016746190079 Functional Gain - VCX3B ENSG00000205642 UTR3 Human protein_coding chrX:8434518 chrX:8434522 . . 0 25 hm5C_associated_SNPs_117880 0 0 0 4 8434519 8434540 mRNA hsa-miR-181c VCX3B miRanda miRanda
9142 chrX 8434522 8434522 1 + T A rs112774168 8434518 + 8434498 8434538 41 CCAGCGGGGTGCTTGCCATTCTGATGATAATAAAATGAATG CCAGCGGGGTGCTTGCCATTCTGAAGATAATAAAATGAATG < 41bp 0.436049240137178 0.72400837309504 0.36590433 0.2304489 prediction 0.448016746190079 Functional Gain - VCX3B ENSG00000205642 UTR3 Human protein_coding chrX:8434518 chrX:8434522 . . 0 25 hm5C_associated_SNPs_117880 0 0 0 4 8434516 8434540 mRNA hsa-miR-181d VCX3B miRanda miRanda
9143 chr2 37474631 37474631 1 + A G UCEC 37474628 + 37474608 37474648 41 GACCACAAGCTTCATGATGTCTTAATTGCCCCAGGAACAGC GACCACAAGCTTCATGATGTCTTGATTGCCCCAGGAACAGC < 41bp 0.500685854654546 0.724659777315091 0.04514861 0.09079096 prediction 0.447947845321091 Functional Gain - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37474628 chr2:37474631 synonymous SNV . 0 24 hm5C_associated_SNPs_117895 0 0 1 3 37474612 37474632 mRNA hsa-miR-208a C2orf56 miRanda miRanda
9144 chr2 37474631 37474631 1 + A G UCEC 37474628 + 37474608 37474648 41 GACCACAAGCTTCATGATGTCTTAATTGCCCCAGGAACAGC GACCACAAGCTTCATGATGTCTTGATTGCCCCAGGAACAGC < 41bp 0.500685854654546 0.724659777315091 0.04514861 0.09079096 prediction 0.447947845321091 Functional Gain - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37474628 chr2:37474631 synonymous SNV . 0 24 hm5C_associated_SNPs_117895 0 0 1 3 37474614 37474632 mRNA hsa-miR-499-5p C2orf56 miRanda miRanda
9145 chr2 37474631 37474631 1 + A G UCEC 37474628 + 37474608 37474648 41 GACCACAAGCTTCATGATGTCTTAATTGCCCCAGGAACAGC GACCACAAGCTTCATGATGTCTTGATTGCCCCAGGAACAGC < 41bp 0.500685854654546 0.724659777315091 0.04514861 0.09079096 prediction 0.447947845321091 Functional Gain - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37474628 chr2:37474631 synonymous SNV . 0 24 hm5C_associated_SNPs_117895 0 0 1 3 37474612 37474632 mRNA hsa-miR-208b C2orf56 miRanda miRanda
9146 chr19 11796323 11796323 1 + T G rs558347536 11796320 + 11796300 11796340 41 ACTCACACTGGTGAAAAACCCTGTGAATGTAAGCAATGTGG ACTCACACTGGTGAAAAACCCTGGGAATGTAAGCAATGTGG < 41bp 0.361429031459238 0.723922428048066 0.14250961 0.34648806 prediction 0.447844856096131 Functional Gain - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11796320 chr19:11796323 . . 0 24 hm5C_associated_SNPs_117919 0 0 0 10 11796307 11796330 mRNA hsa-miR-181a ZNF833 miRanda miRanda
9147 chr19 11796323 11796323 1 + T G rs558347536 11796320 + 11796300 11796340 41 ACTCACACTGGTGAAAAACCCTGTGAATGTAAGCAATGTGG ACTCACACTGGTGAAAAACCCTGGGAATGTAAGCAATGTGG < 41bp 0.361429031459238 0.723922428048066 0.14250961 0.34648806 prediction 0.447844856096131 Functional Gain - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11796320 chr19:11796323 . . 0 24 hm5C_associated_SNPs_117919 0 0 0 10 11796308 11796330 mRNA hsa-miR-181b ZNF833 miRanda miRanda
9148 chr19 11796323 11796323 1 + T G rs558347536 11796320 + 11796300 11796340 41 ACTCACACTGGTGAAAAACCCTGTGAATGTAAGCAATGTGG ACTCACACTGGTGAAAAACCCTGGGAATGTAAGCAATGTGG < 41bp 0.361429031459238 0.723922428048066 0.14250961 0.34648806 prediction 0.447844856096131 Functional Gain - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11796320 chr19:11796323 . . 0 24 hm5C_associated_SNPs_117919 0 0 0 10 11796309 11796330 mRNA hsa-miR-181c ZNF833 miRanda miRanda
9149 chr19 11796323 11796323 1 + T G rs558347536 11796320 + 11796300 11796340 41 ACTCACACTGGTGAAAAACCCTGTGAATGTAAGCAATGTGG ACTCACACTGGTGAAAAACCCTGGGAATGTAAGCAATGTGG < 41bp 0.361429031459238 0.723922428048066 0.14250961 0.34648806 prediction 0.447844856096131 Functional Gain - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11796320 chr19:11796323 . . 0 24 hm5C_associated_SNPs_117919 0 0 0 10 11796305 11796330 mRNA hsa-miR-181d ZNF833 miRanda miRanda
9150 chr19 11796323 11796323 1 + T G rs558347536 11796320 + 11796300 11796340 41 ACTCACACTGGTGAAAAACCCTGTGAATGTAAGCAATGTGG ACTCACACTGGTGAAAAACCCTGGGAATGTAAGCAATGTGG < 41bp 0.361429031459238 0.723922428048066 0.14250961 0.34648806 prediction 0.447844856096131 Functional Gain - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11796320 chr19:11796323 . . 0 24 hm5C_associated_SNPs_117919 0 0 0 10 11796307 11796330 lncRNA hsa-miR-181a-5p AC008543.1 miRanda starBase2
9151 chr19 11796323 11796323 1 + T G rs558347536 11796320 + 11796300 11796340 41 ACTCACACTGGTGAAAAACCCTGTGAATGTAAGCAATGTGG ACTCACACTGGTGAAAAACCCTGGGAATGTAAGCAATGTGG < 41bp 0.361429031459238 0.723922428048066 0.14250961 0.34648806 prediction 0.447844856096131 Functional Gain - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11796320 chr19:11796323 . . 0 24 hm5C_associated_SNPs_117919 0 0 0 10 11796308 11796330 lncRNA hsa-miR-181b-5p AC008543.1 miRanda starBase2
9152 chr19 11796323 11796323 1 + T G rs558347536 11796320 + 11796300 11796340 41 ACTCACACTGGTGAAAAACCCTGTGAATGTAAGCAATGTGG ACTCACACTGGTGAAAAACCCTGGGAATGTAAGCAATGTGG < 41bp 0.361429031459238 0.723922428048066 0.14250961 0.34648806 prediction 0.447844856096131 Functional Gain - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11796320 chr19:11796323 . . 0 24 hm5C_associated_SNPs_117919 0 0 0 10 11796309 11796330 lncRNA hsa-miR-181c-5p AC008543.1 miRanda starBase2
9153 chr19 11796323 11796323 1 + T G rs558347536 11796320 + 11796300 11796340 41 ACTCACACTGGTGAAAAACCCTGTGAATGTAAGCAATGTGG ACTCACACTGGTGAAAAACCCTGGGAATGTAAGCAATGTGG < 41bp 0.361429031459238 0.723922428048066 0.14250961 0.34648806 prediction 0.447844856096131 Functional Gain - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11796320 chr19:11796323 . . 0 24 hm5C_associated_SNPs_117919 0 0 0 10 11796305 11796330 lncRNA hsa-miR-181d-5p AC008543.1 miRanda starBase2
9154 chr19 11796323 11796323 1 + T G rs558347536 11796320 + 11796300 11796340 41 ACTCACACTGGTGAAAAACCCTGTGAATGTAAGCAATGTGG ACTCACACTGGTGAAAAACCCTGGGAATGTAAGCAATGTGG < 41bp 0.361429031459238 0.723922428048066 0.14250961 0.34648806 prediction 0.447844856096131 Functional Gain - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11796320 chr19:11796323 . . 0 24 hm5C_associated_SNPs_117919 0 0 0 10 11796314 11796330 lncRNA hsa-miR-4262 AC008543.1 miRanda starBase2
9155 chr19 11796323 11796323 1 + T G rs558347536 11796320 + 11796300 11796340 41 ACTCACACTGGTGAAAAACCCTGTGAATGTAAGCAATGTGG ACTCACACTGGTGAAAAACCCTGGGAATGTAAGCAATGTGG < 41bp 0.361429031459238 0.723922428048066 0.14250961 0.34648806 prediction 0.447844856096131 Functional Gain - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11796320 chr19:11796323 . . 0 24 hm5C_associated_SNPs_117919 0 0 0 10 11796309 11796326 lncRNA hsa-miR-513a-5p AC008543.1 miRanda starBase2
9156 chr5 121786272 121786272 1 + C A LUAD 121786271 + 121786251 121786291 41 GAAAGTCCCAGTGGAAATCTCCAGATGCAGATGATGATTCT GAAAGTCCCAGTGGAAATCTCAAGATGCAGATGATGATTCT < 41bp 0.542169488831551 0.766084023981162 0.91767883 0.4266937 prediction 0.447829070299224 Functional Gain - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786271 chr5:121786272 nonsynonymous SNV 0.826 1 22 hm5C_associated_SNPs_117925 0 0 0 2 121786257 121786280 mRNA hsa-miR-33a SNCAIP miRanda miRanda
9157 chr5 121786272 121786272 1 + C A LUAD 121786271 + 121786251 121786291 41 GAAAGTCCCAGTGGAAATCTCCAGATGCAGATGATGATTCT GAAAGTCCCAGTGGAAATCTCAAGATGCAGATGATGATTCT < 41bp 0.542169488831551 0.766084023981162 0.91767883 0.4266937 prediction 0.447829070299224 Functional Gain - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786271 chr5:121786272 nonsynonymous SNV 0.826 1 22 hm5C_associated_SNPs_117925 0 0 0 2 121786269 121786290 mRNA hsa-miR-216a SNCAIP miRanda miRanda
9158 chr2 231912001 231912001 1 + A G rs146241761 231911998 + 231911978 231912018 41 GTCTCTCTGTCTCGGTTTCTCTGAGCCACTGAGACAGATGG GTCTCTCTGTCTCGGTTTCTCTGGGCCACTGAGACAGATGG < 41bp 0.544624182122904 0.768389758056339 0.73453283 0.8816706 prediction 0.447531151866869 Functional Gain - C2orf72 ENSG00000204128 UTR3 Human protein_coding chr2:231911998 chr2:231912001 . . 0 24 hm5C_associated_SNPs_118003 0 0 1 1 231911984 231912005 mRNA hsa-miR-24 C2orf72 miRanda miRanda
9159 chr1 1469921 1469921 1 + C A rs187397098 1469920 + 1469900 1469940 41 CCCCCTGTGGCCGGCATGCCCCGATCTTTCACACACTGGTG CCCCCTGTGGCCGGCATGCCCAGATCTTTCACACACTGGTG < 41bp 0.483745100500091 0.723705182795116 0.029851198 0.4131913 prediction 0.447410365590231 Functional Gain - ATAD3A ENSG00000197785 UTR3 Human protein_coding chr1:1469920 chr1:1469921 . . 0 22 hm5C_associated_SNPs_118026 0 0 1 2 1469916 1469939 mRNA hsa-miR-199a-5p ATAD3A miRanda miRanda
9160 chr1 1469921 1469921 1 + C A rs187397098 1469920 + 1469900 1469940 41 CCCCCTGTGGCCGGCATGCCCCGATCTTTCACACACTGGTG CCCCCTGTGGCCGGCATGCCCAGATCTTTCACACACTGGTG < 41bp 0.483745100500091 0.723705182795116 0.029851198 0.4131913 prediction 0.447410365590231 Functional Gain - ATAD3A ENSG00000197785 UTR3 Human protein_coding chr1:1469920 chr1:1469921 . . 0 22 hm5C_associated_SNPs_118026 0 0 1 2 1469917 1469939 mRNA hsa-miR-199b-5p ATAD3A miRanda miRanda
9161 chr14 67850225 67850225 1 + T G rs148521707 67850223 + 67850203 67850243 41 TCCTGGCTGTAAATCCTAGACTTGAAAGTTTTCCAGTATTG TCCTGGCTGTAAATCCTAGACTGGAAAGTTTTCCAGTATTG < 41bp 0.446738119183906 0.723650352749729 0.08288959 0.2908477 prediction 0.447300705499459 Functional Gain - EIF2S1 ENSG00000134001 UTR3 Human protein_coding chr14:67850223 chr14:67850225 . . 0 23 hm5C_associated_SNPs_118052 0 0 1 3 67850222 67850243 mRNA hsa-miR-200b EIF2S1 miRanda miRanda
9162 chr14 67850225 67850225 1 + T G rs148521707 67850223 + 67850203 67850243 41 TCCTGGCTGTAAATCCTAGACTTGAAAGTTTTCCAGTATTG TCCTGGCTGTAAATCCTAGACTGGAAAGTTTTCCAGTATTG < 41bp 0.446738119183906 0.723650352749729 0.08288959 0.2908477 prediction 0.447300705499459 Functional Gain - EIF2S1 ENSG00000134001 UTR3 Human protein_coding chr14:67850223 chr14:67850225 . . 0 23 hm5C_associated_SNPs_118052 0 0 1 3 67850221 67850243 mRNA hsa-miR-200c EIF2S1 miRanda miRanda
9163 chr14 67850225 67850225 1 + T G rs148521707 67850223 + 67850203 67850243 41 TCCTGGCTGTAAATCCTAGACTTGAAAGTTTTCCAGTATTG TCCTGGCTGTAAATCCTAGACTGGAAAGTTTTCCAGTATTG < 41bp 0.446738119183906 0.723650352749729 0.08288959 0.2908477 prediction 0.447300705499459 Functional Gain - EIF2S1 ENSG00000134001 UTR3 Human protein_coding chr14:67850223 chr14:67850225 . . 0 23 hm5C_associated_SNPs_118052 0 0 1 3 67850222 67850243 mRNA hsa-miR-429 EIF2S1 miRanda miRanda
9164 chr7 143027907 143027907 1 + T G LUAD 143027904 + 143027884 143027924 41 GGTCACCTCCACCTACTTTGCTGTTCGGAACTACTGGAGAG GGTCACCTCCACCTACTTTGCTGGTCGGAACTACTGGAGAG < 41bp 0.31878569132937 0.72362739781785 0.09358525 0.25163156 prediction 0.447254795635701 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143027904 chr7:143027907 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_118070 0 0 0 2 143027898 143027921 mRNA hsa-miR-199a-5p CLCN1 miRanda miRanda
9165 chr7 143027907 143027907 1 + T G LUAD 143027904 + 143027884 143027924 41 GGTCACCTCCACCTACTTTGCTGTTCGGAACTACTGGAGAG GGTCACCTCCACCTACTTTGCTGGTCGGAACTACTGGAGAG < 41bp 0.31878569132937 0.72362739781785 0.09358525 0.25163156 prediction 0.447254795635701 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143027904 chr7:143027907 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_118070 0 0 0 2 143027898 143027921 mRNA hsa-miR-199b-5p CLCN1 miRanda miRanda
9166 chr3 115439752 115439752 1 + A G rs199967005 115439749 + 115439729 115439769 41 AACTCTAAGAAATGGCTTTCCACATCCCCACCCTCCCCTCT AACTCTAAGAAATGGCTTTCCACGTCCCCACCCTCCCCTCT < 41bp 0.529324460830989 0.752922338822838 0.09227714 0.12511179 prediction 0.447195755983697 Functional Gain - GAP43 ENSG00000172020 UTR3 Human protein_coding chr3:115439749 chr3:115439752 . . 0 24 hm5C_associated_SNPs_118083 0 0 0 1 115439739 115439760 mRNA hsa-miR-491-5p GAP43 miRanda miRanda
9167 chr17 32598725 32598725 1 + C A COAD 32598724 + 32598704 32598744 41 TCTGCTCCACAGCTTCAAGACCAAACTGGACAAGGAGATCT TCTGCTCCACAGCTTCAAGACAAAACTGGACAAGGAGATCT < 41bp 0.498318335903995 0.723534084774498 0.06996766 0.04677993 prediction 0.447068169548996 Functional Gain - CCL7 ENSG00000108688 CDS Human protein_coding chr17:32598724 chr17:32598725 nonsynonymous SNV 0.341 0 22 hm5C_associated_SNPs_118110 0 0 0 1 32598716 32598734 mRNA hsa-miR-145 CCL7 miRanda miRanda
9168 chr7 100466214 100466214 1 + C T HNSC 100466213 + 100466193 100466233 41 CTCCCTATGGGGGCCCCACTCCAGCCTCTTACACTACCGCC CTCCCTATGGGGGCCCCACTCTAGCCTCTTACACTACCGCC < 41bp 0.557037149614341 0.780547974006034 0.5521221 0.43488008 prediction 0.447021648783386 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100466213 chr7:100466214 nonsynonymous SNV 0.905 3 22 hm5C_associated_SNPs_118117 0 0 1 2 100466208 100466230 mRNA hsa-miR-142-3p TRIP6 miRanda miRanda
9169 chr7 100466214 100466214 1 + C T HNSC 100466213 + 100466193 100466233 41 CTCCCTATGGGGGCCCCACTCCAGCCTCTTACACTACCGCC CTCCCTATGGGGGCCCCACTCTAGCCTCTTACACTACCGCC < 41bp 0.557037149614341 0.780547974006034 0.5521221 0.43488008 prediction 0.447021648783386 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100466213 chr7:100466214 nonsynonymous SNV 0.905 3 22 hm5C_associated_SNPs_118117 0 0 1 2 100466201 100466221 mRNA hsa-miR-485-5p TRIP6 miRanda miRanda
9170 chr19 10370476 10370476 1 + C A THCA 10370475 + 10370455 10370495 41 CCCAGGGCCCAGCGGCCACCCCGTACCACTGTTGATGTGAA CCCAGGGCCCAGCGGCCACCCAGTACCACTGTTGATGTGAA < 41bp 0.5418270046803 0.765218665224633 0.08543441 0.085203975 prediction 0.446783321088665 Functional Gain - MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10370475 chr19:10370476 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_118163 0 0 1 1 10370470 10370490 mRNA hsa-miR-421 MRPL4 miRanda miRanda
9171 chr6 17292179 17292179 1 + C A STAD 17292175 + 17292155 17292195 41 CTATGACCAGTACCCCTATGCAGCCTCTCCAGCTGCTGCAG CTATGACCAGTACCCCTATGCAGCATCTCCAGCTGCTGCAG < 41bp 0.70975951512656 0.933122345794307 0.031314045 0.046821207 prediction 0.446725661335493 Functional Gain - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292175 chr6:17292179 synonymous SNV . 0 25 hm5C_associated_SNPs_118179 0 0 0 1 17292161 17292182 mRNA hsa-miR-485-5p RBM24 miRanda miRanda
9172 chr11 71707396 71707396 1 + C A rs188341542 71707392 + 71707372 71707412 41 CATCAGTGGAAAACCCACCCCACACGCCATGGACCTCAGGG CATCAGTGGAAAACCCACCCCACAAGCCATGGACCTCAGGG < 41bp 0.317027371186576 0.723353500670128 0.036416054 0.059882343 prediction 0.446707001340255 Functional Gain - RNF121 ENSG00000137522 UTR3 Human protein_coding chr11:71707392 chr11:71707396 . . 0 25 hm5C_associated_SNPs_118189 0 0 1 1 71707392 71707415 mRNA hsa-miR-874 RNF121 miRanda miRanda
9173 chr2 1497738 1497738 1 + C T SKCM 1497737 + 1497717 1497757 41 GGCTTAGCTGAAAACTTCCTCCCCAGGGCTCGGACAGGGCC GGCTTAGCTGAAAACTTCCTCTCCAGGGCTCGGACAGGGCC < 41bp 0.442286967271645 0.723334509061954 0.2626254 0.9284868 prediction 0.446669018123907 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1497737 chr2:1497738 nonsynonymous SNV 0.012 3 22 hm5C_associated_SNPs_118200 0 0 0 1 1497728 1497750 mRNA hsa-miR-615-3p TPO miRanda miRanda
9174 chr1 155150586 155150586 1 + C A LUAD 155150582 + 155150562 155150602 41 CTTCAGGCCATTGAAGAATGCCAGCAGGAGCGGCTGGCCCG CTTCAGGCCATTGAAGAATGCCAGAAGGAGCGGCTGGCCCG < 41bp 0.338432140252599 0.723260602618378 0.4832613 0.8871057 prediction 0.446521205236756 Functional Gain - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155150582 chr1:155150586 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_118234 0 0 0 1 155150569 155150590 mRNA hsa-miR-370 TRIM46 miRanda miRanda
9175 chr17 42267999 42267999 1 + C A UCEC 42267998 + 42267978 42268018 41 ATTCACTGCCACCGCTCACCCCCAGGGTCAGCTGTTCCAGG ATTCACTGCCACCGCTCACCCACAGGGTCAGCTGTTCCAGG < 41bp 0.584380234358717 0.807565079797237 0.17486691 0.18920553 prediction 0.446369690877038 Functional Gain - TMUB2 ENSG00000168591 CDS Human protein_coding chr17:42267998 chr17:42267999 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_118267 0 0 1 1 42267986 42268007 mRNA hsa-miR-504 TMUB2 miRanda miRanda
9176 chr11 113848541 113848541 1 + A G rs528818878 113848538 + 113848518 113848558 41 GCCCGCTCTGCTGAGGCTGTCGGATTACCTTTTGACCAACT GCCCGCTCTGCTGAGGCTGTCGGGTTACCTTTTGACCAACT < 41bp 0.557829449370864 0.78101132346011 0.78985286 0.9112092 prediction 0.446363748178492 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113848538 chr11:113848541 nonsynonymous SNV 0.156 0 24 hm5C_associated_SNPs_118271 0 0 0 1 113848533 113848557 mRNA hsa-miR-182 HTR3A miRanda miRanda
9177 chr14 23946746 23946746 1 + C A UCEC 23946745 + 23946725 23946765 41 TTAAGAAGCGGAAGAAGATACCTCAGAAAGGTCGGAAGAAA TTAAGAAGCGGAAGAAGATACATCAGAAAGGTCGGAAGAAA < 41bp 0.473695997891036 0.723173233997583 0.122282416 0.066333115 prediction 0.446346467995165 Functional Gain - NGDN ENSG00000129460 CDS Human protein_coding chr14:23946745 chr14:23946746 nonsynonymous SNV 0.831 0 22 hm5C_associated_SNPs_118275 0 0 1 1 23946730 23946749 mRNA hsa-miR-202 NGDN miRanda miRanda
9178 chr1 2436223 2436223 1 + C A rs372614617 2436219 + 2436199 2436239 41 CCCTAGCTTTGAGGGCGGCTCCCGCAGACTGAGCCACAGCC CCCTAGCTTTGAGGGCGGCTCCCGAAGACTGAGCCACAGCC < 41bp 0.348991829379759 0.722994380138475 0.5041072 0.6797302 prediction 0.44598876027695 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2436219 chr1:2436223 synonymous SNV . 0 25 hm5C_associated_SNPs_118357 0 0 0 1 2436214 2436234 mRNA hsa-miR-24 PLCH2 miRanda miRanda
9179 chr15 83796213 83796213 1 + C A UCEC 83796209 + 83796189 83796229 41 TGCCTGACATCACATTGATACATGCTGGAGGTCTGGCTCAG TGCCTGACATCACATTGATACATGATGGAGGTCTGGCTCAG < 41bp 0.312806393295483 0.722992998929999 0.19578609 0.22561604 prediction 0.445985997859999 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83796209 chr15:83796213 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_118359 0 0 0 1 83796196 83796217 mRNA hsa-miR-338-3p TM6SF1 miRanda miRanda
9180 chr1 212619202 212619202 1 + C A LGG 212619201 + 212619181 212619221 41 ACGGCCAAGGAACTGGAGGCCCTGGATGAGGTCTTCACCAA ACGGCCAAGGAACTGGAGGCCATGGATGAGGTCTTCACCAA < 41bp 0.468944919857207 0.722945296288812 0.46209002 0.4384293 prediction 0.445890592577624 Functional Gain - NENF ENSG00000117691 CDS Human protein_coding chr1:212619201 chr1:212619202 nonsynonymous SNV 0.736 4 22 hm5C_associated_SNPs_118379 0 0 1 1 212619202 212619224 mRNA hsa-miR-9 NENF miRanda miRanda
9181 chr2 89100645 89100645 1 + C A LUAD 89100641 + 89100621 89100661 41 GGATGATGCTCGCAACAAAGCTGACAATCAAGAAAAGGCAA GGATGATGCTCGCAACAAAGCTGAAAATCAAGAAAAGGCAA < 41bp 0.32786817290937 0.722852930846482 0.06359768 0.27312765 prediction 0.445705861692963 Functional Gain - ANKRD36BP2 ENSG00000230006 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:89100641 chr2:89100645 . . 0 25 hm5C_associated_SNPs_118406 0 0 0 1 89100630 89100650 mRNA hsa-miR-219-5p FLJ40330 miRanda miRanda
9182 chr16 89169163 89169163 1 + A G UCEC 89169160 + 89169140 89169180 41 GATGATGCCTGAGTTCAGCCCTCAGCAGGTGAGTTGGGGTC GATGATGCCTGAGTTCAGCCCTCGGCAGGTGAGTTGGGGTC < 41bp 0.565888328337975 0.788737430369731 0.17061248 0.23489562 prediction 0.445698204063513 Functional Gain - ACSF3 ENSG00000176715 CDS Human protein_coding chr16:89169160 chr16:89169163 nonsynonymous SNV 0.718 1 24 hm5C_associated_SNPs_118411 0 0 1 1 89169147 89169167 mRNA hsa-miR-370 ACSF3 miRanda miRanda
9183 chr22 31602343 31602343 1 + C G rs149072389 31602342 + 31602322 31602362 41 CCTGATAGATTTTAAACATTCCTGGGCACCCACTCAAGAGT CCTGATAGATTTTAAACATTCGTGGGCACCCACTCAAGAGT < 41bp 0.446440908185606 0.722834615127155 0.057503015 0.23479235 prediction 0.44566923025431 Functional Gain - RNF185 ENSG00000138942 UTR3 Human protein_coding chr22:31602342 chr22:31602343 . . 0 22 hm5C_associated_SNPs_118419 0 0 0 3 31602324 31602344 mRNA hsa-miR-1 RNF185 miRanda miRanda
9184 chr22 31602343 31602343 1 + C G rs149072389 31602342 + 31602322 31602362 41 CCTGATAGATTTTAAACATTCCTGGGCACCCACTCAAGAGT CCTGATAGATTTTAAACATTCGTGGGCACCCACTCAAGAGT < 41bp 0.446440908185606 0.722834615127155 0.057503015 0.23479235 prediction 0.44566923025431 Functional Gain - RNF185 ENSG00000138942 UTR3 Human protein_coding chr22:31602342 chr22:31602343 . . 0 22 hm5C_associated_SNPs_118419 0 0 0 3 31602324 31602344 mRNA hsa-miR-206 RNF185 miRanda miRanda
9185 chr22 31602343 31602343 1 + C G rs149072389 31602342 + 31602322 31602362 41 CCTGATAGATTTTAAACATTCCTGGGCACCCACTCAAGAGT CCTGATAGATTTTAAACATTCGTGGGCACCCACTCAAGAGT < 41bp 0.446440908185606 0.722834615127155 0.057503015 0.23479235 prediction 0.44566923025431 Functional Gain - RNF185 ENSG00000138942 UTR3 Human protein_coding chr22:31602342 chr22:31602343 . . 0 22 hm5C_associated_SNPs_118419 0 0 0 3 31602325 31602344 mRNA hsa-miR-613 RNF185 miRanda miRanda
9186 chr1 17571984 17571984 1 + C A rs146503709 17571983 + 17571963 17572003 41 GAAGCCAGCCTACCCTCTTCCCCCACTGCCAGTGAGGCCAT GAAGCCAGCCTACCCTCTTCCACCACTGCCAGTGAGGCCAT < 41bp 0.528526058257151 0.751329538477327 0.21257222 0.41271418 prediction 0.445606960440351 Functional Gain - PADI1 ENSG00000142623 UTR3 Human protein_coding chr1:17571983 chr1:17571984 . . 0 22 hm5C_associated_SNPs_118428 0 0 0 4 17571972 17571993 mRNA hsa-miR-34a PADI1 miRanda miRanda
9187 chr1 17571984 17571984 1 + C A rs146503709 17571983 + 17571963 17572003 41 GAAGCCAGCCTACCCTCTTCCCCCACTGCCAGTGAGGCCAT GAAGCCAGCCTACCCTCTTCCACCACTGCCAGTGAGGCCAT < 41bp 0.528526058257151 0.751329538477327 0.21257222 0.41271418 prediction 0.445606960440351 Functional Gain - PADI1 ENSG00000142623 UTR3 Human protein_coding chr1:17571983 chr1:17571984 . . 0 22 hm5C_associated_SNPs_118428 0 0 0 4 17571971 17571993 mRNA hsa-miR-34c-5p PADI1 miRanda miRanda
9188 chr1 17571984 17571984 1 + C A rs146503709 17571983 + 17571963 17572003 41 GAAGCCAGCCTACCCTCTTCCCCCACTGCCAGTGAGGCCAT GAAGCCAGCCTACCCTCTTCCACCACTGCCAGTGAGGCCAT < 41bp 0.528526058257151 0.751329538477327 0.21257222 0.41271418 prediction 0.445606960440351 Functional Gain - PADI1 ENSG00000142623 UTR3 Human protein_coding chr1:17571983 chr1:17571984 . . 0 22 hm5C_associated_SNPs_118428 0 0 0 4 17571972 17571993 mRNA hsa-miR-449a PADI1 miRanda miRanda
9189 chr1 17571984 17571984 1 + C A rs146503709 17571983 + 17571963 17572003 41 GAAGCCAGCCTACCCTCTTCCCCCACTGCCAGTGAGGCCAT GAAGCCAGCCTACCCTCTTCCACCACTGCCAGTGAGGCCAT < 41bp 0.528526058257151 0.751329538477327 0.21257222 0.41271418 prediction 0.445606960440351 Functional Gain - PADI1 ENSG00000142623 UTR3 Human protein_coding chr1:17571983 chr1:17571984 . . 0 22 hm5C_associated_SNPs_118428 0 0 0 4 17571972 17571993 mRNA hsa-miR-449b PADI1 miRanda miRanda
9190 chr2 84518446 84518446 1 + C A UCEC 84518442 + 84518422 84518462 41 TCCTGGTTTTTTCCAGTCAGCAGCCTCTACACTCCATCACA TCCTGGTTTTTTCCAGTCAGCAGCATCTACACTCCATCACA < 41bp 0.355630775963054 0.722784992460003 0.034599304 0.054050684 prediction 0.445569984920007 Functional Gain - FUNDC2P2 ENSG00000182814 ncRNA_exonic Human transcribed_processed_pseudogene chr2:84518442 chr2:84518446 . . 0 25 hm5C_associated_SNPs_118434 0 0 0 8 84518435 84518456 mRNA hsa-let-7a FUNDC2P2 miRanda miRanda
9191 chr2 84518446 84518446 1 + C A UCEC 84518442 + 84518422 84518462 41 TCCTGGTTTTTTCCAGTCAGCAGCCTCTACACTCCATCACA TCCTGGTTTTTTCCAGTCAGCAGCATCTACACTCCATCACA < 41bp 0.355630775963054 0.722784992460003 0.034599304 0.054050684 prediction 0.445569984920007 Functional Gain - FUNDC2P2 ENSG00000182814 ncRNA_exonic Human transcribed_processed_pseudogene chr2:84518442 chr2:84518446 . . 0 25 hm5C_associated_SNPs_118434 0 0 0 8 84518436 84518456 mRNA hsa-let-7b FUNDC2P2 miRanda miRanda
9192 chr2 84518446 84518446 1 + C A UCEC 84518442 + 84518422 84518462 41 TCCTGGTTTTTTCCAGTCAGCAGCCTCTACACTCCATCACA TCCTGGTTTTTTCCAGTCAGCAGCATCTACACTCCATCACA < 41bp 0.355630775963054 0.722784992460003 0.034599304 0.054050684 prediction 0.445569984920007 Functional Gain - FUNDC2P2 ENSG00000182814 ncRNA_exonic Human transcribed_processed_pseudogene chr2:84518442 chr2:84518446 . . 0 25 hm5C_associated_SNPs_118434 0 0 0 8 84518436 84518456 mRNA hsa-let-7c FUNDC2P2 miRanda miRanda
9193 chr2 84518446 84518446 1 + C A UCEC 84518442 + 84518422 84518462 41 TCCTGGTTTTTTCCAGTCAGCAGCCTCTACACTCCATCACA TCCTGGTTTTTTCCAGTCAGCAGCATCTACACTCCATCACA < 41bp 0.355630775963054 0.722784992460003 0.034599304 0.054050684 prediction 0.445569984920007 Functional Gain - FUNDC2P2 ENSG00000182814 ncRNA_exonic Human transcribed_processed_pseudogene chr2:84518442 chr2:84518446 . . 0 25 hm5C_associated_SNPs_118434 0 0 0 8 84518435 84518456 mRNA hsa-let-7d FUNDC2P2 miRanda miRanda
9194 chr2 84518446 84518446 1 + C A UCEC 84518442 + 84518422 84518462 41 TCCTGGTTTTTTCCAGTCAGCAGCCTCTACACTCCATCACA TCCTGGTTTTTTCCAGTCAGCAGCATCTACACTCCATCACA < 41bp 0.355630775963054 0.722784992460003 0.034599304 0.054050684 prediction 0.445569984920007 Functional Gain - FUNDC2P2 ENSG00000182814 ncRNA_exonic Human transcribed_processed_pseudogene chr2:84518442 chr2:84518446 . . 0 25 hm5C_associated_SNPs_118434 0 0 0 8 84518435 84518456 mRNA hsa-let-7e FUNDC2P2 miRanda miRanda
9195 chr2 84518446 84518446 1 + C A UCEC 84518442 + 84518422 84518462 41 TCCTGGTTTTTTCCAGTCAGCAGCCTCTACACTCCATCACA TCCTGGTTTTTTCCAGTCAGCAGCATCTACACTCCATCACA < 41bp 0.355630775963054 0.722784992460003 0.034599304 0.054050684 prediction 0.445569984920007 Functional Gain - FUNDC2P2 ENSG00000182814 ncRNA_exonic Human transcribed_processed_pseudogene chr2:84518442 chr2:84518446 . . 0 25 hm5C_associated_SNPs_118434 0 0 0 8 84518433 84518456 mRNA hsa-let-7i FUNDC2P2 miRanda miRanda
9196 chr2 84518446 84518446 1 + C A UCEC 84518442 + 84518422 84518462 41 TCCTGGTTTTTTCCAGTCAGCAGCCTCTACACTCCATCACA TCCTGGTTTTTTCCAGTCAGCAGCATCTACACTCCATCACA < 41bp 0.355630775963054 0.722784992460003 0.034599304 0.054050684 prediction 0.445569984920007 Functional Gain - FUNDC2P2 ENSG00000182814 ncRNA_exonic Human transcribed_processed_pseudogene chr2:84518442 chr2:84518446 . . 0 25 hm5C_associated_SNPs_118434 0 0 0 8 84518435 84518457 mRNA hsa-miR-122 FUNDC2P2 miRanda miRanda
9197 chr2 84518446 84518446 1 + C A UCEC 84518442 + 84518422 84518462 41 TCCTGGTTTTTTCCAGTCAGCAGCCTCTACACTCCATCACA TCCTGGTTTTTTCCAGTCAGCAGCATCTACACTCCATCACA < 41bp 0.355630775963054 0.722784992460003 0.034599304 0.054050684 prediction 0.445569984920007 Functional Gain - FUNDC2P2 ENSG00000182814 ncRNA_exonic Human transcribed_processed_pseudogene chr2:84518442 chr2:84518446 . . 0 25 hm5C_associated_SNPs_118434 0 0 0 8 84518426 84518449 mRNA hsa-miR-485-5p FUNDC2P2 miRanda miRanda
9198 chrX 36007499 36007499 1 + C T SARC 36007498 + 36007478 36007518 41 GGCAGCAGGGCTTCAGTTCTCCAGAAGAAGGAGAATTTATT GGCAGCAGGGCTTCAGTTCTCTAGAAGAAGGAGAATTTATT < 41bp 0.482766224427154 0.722660153834776 0.8594886 0.44891584 prediction 0.445320307669552 Functional Gain - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:36007498 chrX:36007499 nonsynonymous SNV 0.434 3 22 hm5C_associated_SNPs_118474 0 0 0 2 36007479 36007499 mRNA hsa-miR-146a CXorf22 miRanda miRanda
9199 chrX 36007499 36007499 1 + C T SARC 36007498 + 36007478 36007518 41 GGCAGCAGGGCTTCAGTTCTCCAGAAGAAGGAGAATTTATT GGCAGCAGGGCTTCAGTTCTCTAGAAGAAGGAGAATTTATT < 41bp 0.482766224427154 0.722660153834776 0.8594886 0.44891584 prediction 0.445320307669552 Functional Gain - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:36007498 chrX:36007499 nonsynonymous SNV 0.434 3 22 hm5C_associated_SNPs_118474 0 0 0 2 36007478 36007499 mRNA hsa-miR-146b-5p CXorf22 miRanda miRanda
9200 chr6 43126654 43126654 1 + C T GBM 43126653 + 43126633 43126673 41 CGTAACTGCCTGGTCAGTGCCCAGAGACAAGTGAAGGTGTC CGTAACTGCCTGGTCAGTGCCTAGAGACAAGTGAAGGTGTC < 41bp 0.459084510965132 0.722622230148148 0.38512176 0.28182915 prediction 0.445244460296296 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43126653 chr6:43126654 stopgain 1.000 1 22 hm5C_associated_SNPs_118487 0 0 1 2 43126637 43126659 mRNA hsa-miR-330-5p PTK7 miRanda miRanda
9201 chr6 43126654 43126654 1 + C T GBM 43126653 + 43126633 43126673 41 CGTAACTGCCTGGTCAGTGCCCAGAGACAAGTGAAGGTGTC CGTAACTGCCTGGTCAGTGCCTAGAGACAAGTGAAGGTGTC < 41bp 0.459084510965132 0.722622230148148 0.38512176 0.28182915 prediction 0.445244460296296 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43126653 chr6:43126654 stopgain 1.000 1 22 hm5C_associated_SNPs_118487 0 0 1 2 43126640 43126659 mRNA hsa-miR-326 PTK7 miRanda miRanda
9202 chr1 229431628 229431628 1 + C T UCEC 229431627 + 229431607 229431647 41 AAGTTATTACCGAGGCGCGGCCGGGGCTCTCCTCGTCTATG AAGTTATTACCGAGGCGCGGCTGGGGCTCTCCTCGTCTATG < 41bp 0.538275866268564 0.760882929230639 0.9177697 0.87195027 prediction 0.445214125924152 Functional Gain - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431627 chr1:229431628 synonymous SNV . 0 22 hm5C_associated_SNPs_118493 0 0 1 2 229431627 229431649 mRNA hsa-miR-376a RAB4A miRanda miRanda
9203 chr1 229431628 229431628 1 + C T UCEC 229431627 + 229431607 229431647 41 AAGTTATTACCGAGGCGCGGCCGGGGCTCTCCTCGTCTATG AAGTTATTACCGAGGCGCGGCTGGGGCTCTCCTCGTCTATG < 41bp 0.538275866268564 0.760882929230639 0.9177697 0.87195027 prediction 0.445214125924152 Functional Gain - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431627 chr1:229431628 synonymous SNV . 0 22 hm5C_associated_SNPs_118493 0 0 1 2 229431626 229431649 mRNA hsa-miR-376b RAB4A miRanda miRanda
9204 chr10 103900329 103900329 1 + C T LUSC 103900328 + 103900308 103900348 41 TGACCCAGTGCTAGTTAAGTCCAGACCAACTGATCCCAGAC TGACCCAGTGCTAGTTAAGTCTAGACCAACTGATCCCAGAC < 41bp 0.552990889037097 0.775573518964565 0.57137305 0.5119933 prediction 0.445165259854936 Functional Gain - PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103900328 chr10:103900329 synonymous SNV . 0 22 hm5C_associated_SNPs_118505 0 0 1 2 103900314 103900332 mRNA hsa-miR-378 PPRC1 miRanda miRanda
9205 chr10 103900329 103900329 1 + C T LUSC 103900328 + 103900308 103900348 41 TGACCCAGTGCTAGTTAAGTCCAGACCAACTGATCCCAGAC TGACCCAGTGCTAGTTAAGTCTAGACCAACTGATCCCAGAC < 41bp 0.552990889037097 0.775573518964565 0.57137305 0.5119933 prediction 0.445165259854936 Functional Gain - PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103900328 chr10:103900329 synonymous SNV . 0 22 hm5C_associated_SNPs_118505 0 0 1 2 103900311 103900332 mRNA hsa-miR-422a PPRC1 miRanda miRanda
9206 chr9 34252127 34252127 1 + T C rs1049567 34252125 + 34252105 34252145 41 CTTTTCTGCCAGGCAGTCACCATGCTTCCCTACCCCAGCCT CTTTTCTGCCAGGCAGTCACCACGCTTCCCTACCCCAGCCT < 41bp 0.497321725250998 0.722562938509652 0.34136304 0.55628073 prediction 0.445125877019303 Functional Gain - UBAP1 ENSG00000165006 UTR3 Human protein_coding chr9:34252125 chr9:34252127 . . 0 23 hm5C_associated_SNPs_118518 0 0 1 1 34252108 34252129 mRNA hsa-miR-125a-3p UBAP1 miRanda miRanda
9207 chr16 28885108 28885108 1 + C G rs148378470 28885107 + 28885087 28885127 41 TGGAGAGGAAGGGGGCCACCCCAGGGCCATTAACAACCAGT TGGAGAGGAAGGGGGCCACCCGAGGGCCATTAACAACCAGT < 41bp 0.646203460979765 0.86864911190662 0.89683765 0.9163841 prediction 0.444891301853709 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28885107 chr16:28885108 synonymous SNV . 0 22 hm5C_associated_SNPs_118583 0 0 1 1 28885091 28885116 mRNA hsa-miR-328 SH2B1 miRanda miRanda
9208 chr16 30094725 30094725 1 + C T SKCM 30094724 + 30094704 30094744 41 GCCACCCCCAGGTTCGCTATCCTGATCGCATCACACTGATC GCCACCCCCAGGTTCGCTATCTTGATCGCATCACACTGATC < 41bp 0.594793995885493 0.817203440257262 0.7587606 0.40155828 prediction 0.444818888743539 Functional Gain - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30094724 chr16:30094725 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_118596 0 0 1 1 30094720 30094742 mRNA hsa-miR-125a-3p PPP4C miRanda miRanda
9209 chr9 15453116 15453116 1 + T C UCEC 15453114 + 15453094 15453134 41 GCTAGAATGGAAGATTTCACCTTCAATGACTTGTGTATTAA GCTAGAATGGAAGATTTCACCTCCAATGACTTGTGTATTAA < 41bp 0.651176941057431 0.873574541434036 0.35679165 0.96429014 prediction 0.44479520075321 Functional Gain - SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15453114 chr9:15453116 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_118602 0 0 1 6 15453095 15453117 mRNA hsa-miR-18a SNAPC3 miRanda miRanda
9210 chr9 15453116 15453116 1 + T C UCEC 15453114 + 15453094 15453134 41 GCTAGAATGGAAGATTTCACCTTCAATGACTTGTGTATTAA GCTAGAATGGAAGATTTCACCTCCAATGACTTGTGTATTAA < 41bp 0.651176941057431 0.873574541434036 0.35679165 0.96429014 prediction 0.44479520075321 Functional Gain - SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15453114 chr9:15453116 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_118602 0 0 1 6 15453106 15453126 mRNA hsa-miR-224 SNAPC3 miRanda miRanda
9211 chr9 15453116 15453116 1 + T C UCEC 15453114 + 15453094 15453134 41 GCTAGAATGGAAGATTTCACCTTCAATGACTTGTGTATTAA GCTAGAATGGAAGATTTCACCTCCAATGACTTGTGTATTAA < 41bp 0.651176941057431 0.873574541434036 0.35679165 0.96429014 prediction 0.44479520075321 Functional Gain - SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15453114 chr9:15453116 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_118602 0 0 1 6 15453097 15453117 mRNA hsa-miR-125a-3p SNAPC3 miRanda miRanda
9212 chr9 15453116 15453116 1 + T C UCEC 15453114 + 15453094 15453134 41 GCTAGAATGGAAGATTTCACCTTCAATGACTTGTGTATTAA GCTAGAATGGAAGATTTCACCTCCAATGACTTGTGTATTAA < 41bp 0.651176941057431 0.873574541434036 0.35679165 0.96429014 prediction 0.44479520075321 Functional Gain - SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15453114 chr9:15453116 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_118602 0 0 1 6 15453109 15453130 mRNA hsa-miR-381 SNAPC3 miRanda miRanda
9213 chr9 15453116 15453116 1 + T C UCEC 15453114 + 15453094 15453134 41 GCTAGAATGGAAGATTTCACCTTCAATGACTTGTGTATTAA GCTAGAATGGAAGATTTCACCTCCAATGACTTGTGTATTAA < 41bp 0.651176941057431 0.873574541434036 0.35679165 0.96429014 prediction 0.44479520075321 Functional Gain - SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15453114 chr9:15453116 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_118602 0 0 1 6 15453096 15453117 mRNA hsa-miR-18b SNAPC3 miRanda miRanda
9214 chr9 15453116 15453116 1 + T C UCEC 15453114 + 15453094 15453134 41 GCTAGAATGGAAGATTTCACCTTCAATGACTTGTGTATTAA GCTAGAATGGAAGATTTCACCTCCAATGACTTGTGTATTAA < 41bp 0.651176941057431 0.873574541434036 0.35679165 0.96429014 prediction 0.44479520075321 Functional Gain - SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15453114 chr9:15453116 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_118602 0 0 1 6 15453109 15453130 mRNA hsa-miR-300 SNAPC3 miRanda miRanda
9215 chr3 122821618 122821618 1 + A G UVM 122821615 + 122821595 122821635 41 CAGGGATGGTGCATTTCATACTGAATATAACCGAGCTGTGA CAGGGATGGTGCATTTCATACTGGATATAACCGAGCTGTGA < 41bp 0.529705021968198 0.752092705550639 0.20440012 0.2737248 prediction 0.444775367164882 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122821615 chr3:122821618 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_118606 0 0 1 3 122821614 122821636 mRNA hsa-miR-27a PDIA5 miRanda miRanda
9216 chr3 122821618 122821618 1 + A G UVM 122821615 + 122821595 122821635 41 CAGGGATGGTGCATTTCATACTGAATATAACCGAGCTGTGA CAGGGATGGTGCATTTCATACTGGATATAACCGAGCTGTGA < 41bp 0.529705021968198 0.752092705550639 0.20440012 0.2737248 prediction 0.444775367164882 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122821615 chr3:122821618 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_118606 0 0 1 3 122821614 122821636 mRNA hsa-miR-27b PDIA5 miRanda miRanda
9217 chr3 122821618 122821618 1 + A G UVM 122821615 + 122821595 122821635 41 CAGGGATGGTGCATTTCATACTGAATATAACCGAGCTGTGA CAGGGATGGTGCATTTCATACTGGATATAACCGAGCTGTGA < 41bp 0.529705021968198 0.752092705550639 0.20440012 0.2737248 prediction 0.444775367164882 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122821615 chr3:122821618 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_118606 0 0 1 3 122821602 122821619 mRNA hsa-miR-144 PDIA5 miRanda miRanda
9218 chr6 149699405 149699405 1 + T C BRCA 149699402 + 149699382 149699422 41 CAACTTCAAGGTGGCCAGTCCAATAGTGAACTATTTCAGCA CAACTTCAAGGTGGCCAGTCCAACAGTGAACTATTTCAGCA < 41bp 0.501696174570969 0.724024738229805 0.13884678 0.120104134 prediction 0.444657127317671 Functional Gain - TAB2 ENSG00000055208 CDS Human protein_coding chr6:149699402 chr6:149699405 synonymous SNV . 0 24 hm5C_associated_SNPs_118629 0 0 1 1 149699403 149699425 mRNA hsa-miR-370 TAB2 miRanda miRanda
9219 chr2 219232510 219232510 1 + C T SKCM 219232509 + 219232489 219232529 41 CGAAGCCCACGCGCTCATCTCCGACTTCCTGCTCTTCCTGC CGAAGCCCACGCGCTCATCTCTGACTTCCTGCTCTTCCTGC < 41bp 0.505796358889395 0.72811357179458 0.83804303 0.21505216 prediction 0.44463442581037 Functional Gain - CATIP ENSG00000158428 CDS Human protein_coding chr2:219232509 chr2:219232510 synonymous SNV . 0 22 hm5C_associated_SNPs_118634 0 0 0 1 219232492 219232510 mRNA hsa-miR-143 C2orf62 miRanda miRanda
9220 chr2 95542327 95542327 1 + T C rs150656282 95542325 + 95542305 95542345 41 AGTGAGGTGGAGGAGCTGAACATGTCCCTCACAGCACTGCG AGTGAGGTGGAGGAGCTGAACACGTCCCTCACAGCACTGCG < 41bp 0.489165074611348 0.722303005676771 0.085998416 0.0964067 prediction 0.444606011353541 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95542325 chr2:95542327 nonsynonymous SNV 0.053 0 23 hm5C_associated_SNPs_118643 0 0 0 1 95542310 95542332 mRNA hsa-miR-613 TEKT4 miRanda miRanda
9221 chr21 37445098 37445098 1 + C A UCEC 37445097 + 37445077 37445117 41 CAGAAGAAGGTGCAGAGACCCCTGTGTACTTGGCCCTTTTG CAGAAGAAGGTGCAGAGACCCATGTGTACTTGGCCCTTTTG < 41bp 0.58182283429718 0.804124409422752 0.20957708 0.39773148 prediction 0.444603150251145 Functional Gain - CBR1 ENSG00000159228 CDS Human protein_coding chr21:37445097 chr21:37445098 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_118644 0 0 1 1 37445088 37445108 mRNA hsa-miR-224 CBR1 miRanda miRanda
9222 chr11 85975253 85975253 1 + T C SKCM 85975250 + 85975230 85975270 41 ATGGAATATCCAGACGGACACTCTGGTGGCAATATTTGGAG ATGGAATATCCAGACGGACACTCCGGTGGCAATATTTGGAG < 41bp 0.5423718847828 0.764660381861222 0.12840009 0.17171457 prediction 0.444576994156844 Functional Gain - EED ENSG00000074266 CDS Human protein_coding chr11:85975250 chr11:85975253 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_118650 0 0 1 2 85975239 85975263 mRNA hsa-miR-25 EED miRanda miRanda
9223 chr11 85975253 85975253 1 + T C SKCM 85975250 + 85975230 85975270 41 ATGGAATATCCAGACGGACACTCTGGTGGCAATATTTGGAG ATGGAATATCCAGACGGACACTCCGGTGGCAATATTTGGAG < 41bp 0.5423718847828 0.764660381861222 0.12840009 0.17171457 prediction 0.444576994156844 Functional Gain - EED ENSG00000074266 CDS Human protein_coding chr11:85975250 chr11:85975253 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_118650 0 0 1 2 85975238 85975263 mRNA hsa-miR-363 EED miRanda miRanda
9224 chr17 62518876 62518876 1 + C T COAD 62518875 + 62518855 62518895 41 AGGAAGCTAGGGGAGCCTATCCGAGCAGCTATTCCTTTACA AGGAAGCTAGGGGAGCCTATCTGAGCAGCTATTCCTTTACA < 41bp 0.554852011510805 0.777107595491791 0.93064725 0.7333015 prediction 0.444511167961973 Functional Gain - CEP95 ENSG00000258890 CDS Human protein_coding chr17:62518875 chr17:62518876 stopgain 0.927 0 22 hm5C_associated_SNPs_118660 0 0 1 2 62518866 62518888 mRNA hsa-miR-200b CCDC45 miRanda miRanda
9225 chr17 62518876 62518876 1 + C T COAD 62518875 + 62518855 62518895 41 AGGAAGCTAGGGGAGCCTATCCGAGCAGCTATTCCTTTACA AGGAAGCTAGGGGAGCCTATCTGAGCAGCTATTCCTTTACA < 41bp 0.554852011510805 0.777107595491791 0.93064725 0.7333015 prediction 0.444511167961973 Functional Gain - CEP95 ENSG00000258890 CDS Human protein_coding chr17:62518875 chr17:62518876 stopgain 0.927 0 22 hm5C_associated_SNPs_118660 0 0 1 2 62518864 62518888 mRNA hsa-miR-200c CCDC45 miRanda miRanda
9226 chr1 156884759 156884759 1 + T C rs55739780 156884757 + 156884737 156884777 41 GCCTTGTTCCTGGGTTCTACCATGGGAGACGCTGATCAGCA GCCTTGTTCCTGGGTTCTACCACGGGAGACGCTGATCAGCA < 41bp 0.551165380117661 0.773380392693082 0.9164632 0.9171664 prediction 0.444430025150842 Functional Gain - PEAR1 ENSG00000187800 UTR3 Human protein_coding chr1:156884757 chr1:156884759 . . 0 23 hm5C_associated_SNPs_118678 0 0 0 1 156884757 156884780 mRNA hsa-miR-370 PEAR1 miRanda miRanda
9227 chr19 45977254 45977254 1 + C A rs538785711 45977250 + 45977230 45977270 41 CCCGAAAGCCTTTCCTCGGTCTCCCTTCCGTCCATCCCCCT CCCGAAAGCCTTTCCTCGGTCTCCATTCCGTCCATCCCCCT < 41bp 0.307821048418288 0.722135411246589 0.06438631 0.9452974 prediction 0.444270822493178 Functional Gain - FOSB ENSG00000125740 UTR3 Human protein_coding chr19:45977250 chr19:45977254 . . 0 25 hm5C_associated_SNPs_118716 0 0 1 1 45977237 45977263 mRNA hsa-miR-184 FOSB miRanda miRanda
9228 chr17 3564218 3564218 1 + T C rs1048646 3564216 + 3564196 3564236 41 TCTGTACATAACTCAGCGTCCGTGACTGCAGTAACAGCCAG TCTGTACATAACTCAGCGTCCGCGACTGCAGTAACAGCCAG < 41bp 0.5662189609565 0.788242229574277 0.022527188 0.045432597 prediction 0.444046537235553 Functional Gain - CTNS ENSG00000040531 UTR3 Human protein_coding chr17:3564216 chr17:3564218 . . 0 23 hm5C_associated_SNPs_118749 2 0 1 2 3564203 3564228 mRNA hsa-miR-217 CTNS miRanda miRanda
9229 chr17 3564218 3564218 1 + T C rs1048646 3564216 + 3564196 3564236 41 TCTGTACATAACTCAGCGTCCGTGACTGCAGTAACAGCCAG TCTGTACATAACTCAGCGTCCGCGACTGCAGTAACAGCCAG < 41bp 0.5662189609565 0.788242229574277 0.022527188 0.045432597 prediction 0.444046537235553 Functional Gain - CTNS ENSG00000040531 UTR3 Human protein_coding chr17:3564216 chr17:3564218 . . 0 23 hm5C_associated_SNPs_118749 2 0 1 2 3564213 3564238 mRNA hsa-miR-138 CTNS miRanda miRanda
9230 chr6 30037008 30037008 1 + C G GBM 30037007 + 30036987 30037027 41 CAAAGGACGGCGTCGTGCAACCCTAGGACCGACCCCCACCA CAAAGGACGGCGTCGTGCAACGCTAGGACCGACCCCCACCA < 41bp 0.462033290894599 0.722011149191445 0.24868885 0.41968504 prediction 0.44402229838289 Functional Gain - PPP1R11 ENSG00000204619 CDS Human protein_coding chr6:30037007 chr6:30037008 synonymous SNV . 0 22 hm5C_associated_SNPs_118754 0 0 1 1 30036989 30037011 mRNA hsa-miR-296-3p PPP1R11 miRanda miRanda
9231 chr16 56686997 56686997 1 + C T SKCM 56686996 + 56686976 56687016 41 GATGTTGGGAGAGCCCTGCTCCCAGACATAAATAGAGCAAC GATGTTGGGAGAGCCCTGCTCTCAGACATAAATAGAGCAAC < 41bp 0.494294164428671 0.721999246945833 0.34882623 0.24464342 prediction 0.443998493891667 Functional Gain - MT1B ENSG00000169688 CDS Human protein_coding chr16:56686996 chr16:56686997 synonymous SNV . 0 22 hm5C_associated_SNPs_118759 0 0 0 2 56686982 56687003 mRNA hsa-miR-330-5p MT1B miRanda miRanda
9232 chr16 56686997 56686997 1 + C T SKCM 56686996 + 56686976 56687016 41 GATGTTGGGAGAGCCCTGCTCCCAGACATAAATAGAGCAAC GATGTTGGGAGAGCCCTGCTCTCAGACATAAATAGAGCAAC < 41bp 0.494294164428671 0.721999246945833 0.34882623 0.24464342 prediction 0.443998493891667 Functional Gain - MT1B ENSG00000169688 CDS Human protein_coding chr16:56686996 chr16:56686997 synonymous SNV . 0 22 hm5C_associated_SNPs_118759 0 0 0 2 56686984 56687003 mRNA hsa-miR-326 MT1B miRanda miRanda
9233 chr11 117034568 117034568 1 + T A LAML 117034564 + 117034544 117034584 41 GTGGGATCGAGGCCATTGTACAACTTATCAACACAAGGCAG GTGGGATCGAGGCCATTGTACAACATATCAACACAAGGCAG < 41bp 0.386445077831077 0.721919777150051 0.10640472 0.09538004 prediction 0.443839554300101 Functional Gain - PAFAH1B2 ENSG00000168092 CDS Human protein_coding chr11:117034564 chr11:117034568 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_118794 0 0 1 3 117034563 117034587 mRNA hsa-miR-22 PAFAH1B2 miRanda miRanda
9234 chr11 117034568 117034568 1 + T A LAML 117034564 + 117034544 117034584 41 GTGGGATCGAGGCCATTGTACAACTTATCAACACAAGGCAG GTGGGATCGAGGCCATTGTACAACATATCAACACAAGGCAG < 41bp 0.386445077831077 0.721919777150051 0.10640472 0.09538004 prediction 0.443839554300101 Functional Gain - PAFAH1B2 ENSG00000168092 CDS Human protein_coding chr11:117034564 chr11:117034568 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_118794 0 0 1 3 117034546 117034570 mRNA hsa-miR-382 PAFAH1B2 miRanda miRanda
9235 chr11 117034568 117034568 1 + T A LAML 117034564 + 117034544 117034584 41 GTGGGATCGAGGCCATTGTACAACTTATCAACACAAGGCAG GTGGGATCGAGGCCATTGTACAACATATCAACACAAGGCAG < 41bp 0.386445077831077 0.721919777150051 0.10640472 0.09538004 prediction 0.443839554300101 Functional Gain - PAFAH1B2 ENSG00000168092 CDS Human protein_coding chr11:117034564 chr11:117034568 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_118794 0 0 1 3 117034557 117034577 mRNA hsa-miR-653 PAFAH1B2 miRanda miRanda
9236 chr17 59489391 59489391 1 + C G rs144355035 59489387 + 59489367 59489407 41 CGAGCCCTGGATTTATACCCCGAGCCTGCCTTCCTCCGCTC CGAGCCCTGGATTTATACCCCGAGGCTGCCTTCCTCCGCTC < 41bp 0.63605578203001 0.857974180595583 0.8826796 0.93473554 prediction 0.443836797131145 Functional Gain - C17orf82 ENSG00000187013 CDS Human lincRNA chr17:59489387 chr17:59489391 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_118795 0 0 0 2 59489378 59489400 lncRNA hsa-miR-605-3p C17orf82 miRanda starBase2
9237 chr17 59489391 59489391 1 + C G rs144355035 59489387 + 59489367 59489407 41 CGAGCCCTGGATTTATACCCCGAGCCTGCCTTCCTCCGCTC CGAGCCCTGGATTTATACCCCGAGGCTGCCTTCCTCCGCTC < 41bp 0.63605578203001 0.857974180595583 0.8826796 0.93473554 prediction 0.443836797131145 Functional Gain - C17orf82 ENSG00000187013 CDS Human lincRNA chr17:59489387 chr17:59489391 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_118795 0 0 0 2 59489383 59489404 lncRNA hsa-miR-766-5p C17orf82 miRanda starBase2
9238 chr12 12247694 12247694 1 + C A rs61738409 12247693 + 12247673 12247713 41 CAGGTCCTAATGGGTGTGGACCCCAGGGGAGAATCAGAGGT CAGGTCCTAATGGGTGTGGACACCAGGGGAGAATCAGAGGT < 41bp 0.464229484860772 0.721824184678061 0.39224076 0.37680367 prediction 0.443648369356123 Functional Gain - BCL2L14 ENSG00000121380 CDS Human protein_coding chr12:12247693 chr12:12247694 nonsynonymous SNV 0.956 0 22 hm5C_associated_SNPs_118834 0 0 0 1 12247692 12247715 mRNA hsa-miR-504 BCL2L14 miRanda miRanda
9239 chr16 29816160 29816160 1 + C T SKCM 29816159 + 29816139 29816179 41 AGTCCCTGGATGCCCTAGAGCCTGAGGAGAAGGCTGAGGAC AGTCCCTGGATGCCCTAGAGCTTGAGGAGAAGGCTGAGGAC < 41bp 0.578474773591669 0.800271257978385 0.4162504 0.24092141 prediction 0.443592968773433 Functional Gain - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29816159 chr16:29816160 nonsynonymous SNV 0.521 0 22 hm5C_associated_SNPs_118847 0 0 1 1 29816138 29816161 mRNA hsa-miR-24 KIF22 miRanda miRanda
9240 chr22 29708456 29708456 1 + C A UCEC 29708455 + 29708435 29708475 41 GCATGCCCTGCACTCAGTCACCCCGAGGGCTGAGCCAGATT GCATGCCCTGCACTCAGTCACACCGAGGGCTGAGCCAGATT < 41bp 0.471772373740698 0.721754500152299 0.1809158 0.16706774 prediction 0.443509000304598 Functional Gain - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29708455 chr22:29708456 synonymous SNV . 0 22 hm5C_associated_SNPs_118871 0 0 1 2 29708450 29708471 mRNA hsa-miR-24 GAS2L1 miRanda miRanda
9241 chr22 29708456 29708456 1 + C A UCEC 29708455 + 29708435 29708475 41 GCATGCCCTGCACTCAGTCACCCCGAGGGCTGAGCCAGATT GCATGCCCTGCACTCAGTCACACCGAGGGCTGAGCCAGATT < 41bp 0.471772373740698 0.721754500152299 0.1809158 0.16706774 prediction 0.443509000304598 Functional Gain - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29708455 chr22:29708456 synonymous SNV . 0 22 hm5C_associated_SNPs_118871 0 0 1 2 29708452 29708473 mRNA hsa-miR-149 GAS2L1 miRanda miRanda
9242 chr3 68594691 68594691 1 + T G rs116730999 68594689 + 68594669 68594709 41 CTCTTGTGAGATAGGAAGGCCATGAAAACAATTAGATTTCA CTCTTGTGAGATAGGAAGGCCAGGAAAACAATTAGATTTCA < 41bp 0.522936151301188 0.744587984709823 0.16356593 0.8017598 prediction 0.443303666817271 Functional Gain - FAM19A1 ENSG00000183662 UTR3 Human protein_coding chr3:68594689 chr3:68594691 . . 0 23 hm5C_associated_SNPs_118909 0 0 0 1 68594689 68594710 mRNA hsa-miR-203 FAM19A1 miRanda miRanda
9243 chr19 991108 991108 1 + C A ESCA 991107 + 991087 991127 41 CAGAGGGAGAGGAGCTTCCACCCAGAGCAGGACGCCGGGAA CAGAGGGAGAGGAGCTTCCACACAGAGCAGGACGCCGGGAA < 41bp 0.45519784589806 0.721527659408267 0.38935935 0.23337191 prediction 0.443055318816534 Functional Gain - WDR18 ENSG00000065268 CDS Human protein_coding chr19:991107 chr19:991108 nonsynonymous SNV 0.948 0 22 hm5C_associated_SNPs_118969 0 0 1 2 991092 991114 mRNA hsa-miR-330-5p WDR18 miRanda miRanda
9244 chr19 991108 991108 1 + C A ESCA 991107 + 991087 991127 41 CAGAGGGAGAGGAGCTTCCACCCAGAGCAGGACGCCGGGAA CAGAGGGAGAGGAGCTTCCACACAGAGCAGGACGCCGGGAA < 41bp 0.45519784589806 0.721527659408267 0.38935935 0.23337191 prediction 0.443055318816534 Functional Gain - WDR18 ENSG00000065268 CDS Human protein_coding chr19:991107 chr19:991108 nonsynonymous SNV 0.948 0 22 hm5C_associated_SNPs_118969 0 0 1 2 991095 991114 mRNA hsa-miR-326 WDR18 miRanda miRanda
9245 chr22 42059692 42059692 1 + T C UCEC 42059690 + 42059670 42059710 41 GAAGAGGAGCTGAAGACCCACATCAGCAAGGGTACGCTGGG GAAGAGGAGCTGAAGACCCACACCAGCAAGGGTACGCTGGG < 41bp 0.61761223734346 0.83910968927235 0.06932598 0.09433204 prediction 0.442994903857779 Functional Gain - XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42059690 chr22:42059692 nonsynonymous SNV 0.149 0 23 hm5C_associated_SNPs_118979 0 0 1 1 42059683 42059693 mRNA hsa-miR-299-3p XRCC6 miRanda miRanda
9246 chr11 7674490 7674490 1 + A G rs147132206 7674487 + 7674467 7674507 41 CTCTGTGCACCCTGAGAGCTCACAGTAACACTGTGTGTGTC CTCTGTGCACCCTGAGAGCTCACGGTAACACTGTGTGTGTC < 41bp 0.541213817446422 0.762653616413554 0.15891331 0.31156355 prediction 0.442879597934265 Functional Gain - PPFIBP2 ENSG00000166387 UTR3 Human protein_coding chr11:7674487 chr11:7674490 . . 0 24 hm5C_associated_SNPs_119004 0 0 0 2 7674479 7674502 mRNA hsa-miR-128 PPFIBP2 miRanda miRanda
9247 chr11 7674490 7674490 1 + A G rs147132206 7674487 + 7674467 7674507 41 CTCTGTGCACCCTGAGAGCTCACAGTAACACTGTGTGTGTC CTCTGTGCACCCTGAGAGCTCACGGTAACACTGTGTGTGTC < 41bp 0.541213817446422 0.762653616413554 0.15891331 0.31156355 prediction 0.442879597934265 Functional Gain - PPFIBP2 ENSG00000166387 UTR3 Human protein_coding chr11:7674487 chr11:7674490 . . 0 24 hm5C_associated_SNPs_119004 0 0 0 2 7674485 7674502 mRNA hsa-miR-128 PPFIBP2 miRanda miRanda
9248 chrX 110385412 110385412 1 + C T COAD 110385411 + 110385391 110385431 41 TGTGGGGTTTGATGCAGTCACCGGGGAATTCACTGTAAGTA TGTGGGGTTTGATGCAGTCACTGGGGAATTCACTGTAAGTA < 41bp 0.549462810696151 0.770893246461735 0.8943956 0.49632534 prediction 0.442860871531168 Functional Gain - PAK3 ENSG00000077264 CDS Human protein_coding chrX:110385411 chrX:110385412 synonymous SNV . 0 22 hm5C_associated_SNPs_119008 0 0 0 1 110385390 110385412 mRNA hsa-miR-134 PAK3 miRanda miRanda
9249 chr9 140508890 140508890 1 + C T SKCM 140508889 + 140508869 140508909 41 CCTTGCCCCAGTCGGCCCTGCCGGGCTGCAGCCTCATCCAC CCTTGCCCCAGTCGGCCCTGCTGGGCTGCAGCCTCATCCAC < 41bp 0.565315488515477 0.786615076207489 0.4907755 0.3149345 prediction 0.442599175384023 Functional Gain - ARRDC1 ENSG00000197070 CDS Human protein_coding chr9:140508889 chr9:140508890 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_119060 0 0 1 1 140508881 140508904 mRNA hsa-miR-485-5p ARRDC1 miRanda miRanda
9250 chr9 95599327 95599327 1 + C G CESC 95599323 + 95599303 95599343 41 GGCCTCCAGCTGGGCCATGTCAGTCTCATCGTCCCAAGGCT GGCCTCCAGCTGGGCCATGTCAGTGTCATCGTCCCAAGGCT < 41bp 0.415248294627308 0.721016389851499 0.17367864 0.30085152 prediction 0.442032779702998 Functional Gain - ANKRD19P ENSG00000187984;ENSG00000226721 ncRNA_exonic Human other chr9:95599323 chr9:95599327 . . 0 25 hm5C_associated_SNPs_119204 0 0 1 1 95599327 95599352 mRNA hsa-miR-876-5p ANKRD19 miRanda miRanda
9251 chr10 93220277 93220277 1 + C A LUAD 93220276 + 93220256 93220296 41 AAATGAAGGCCCCAGTCCTTCCAGAACCTATTCTTCCTATC AAATGAAGGCCCCAGTCCTTCAAGAACCTATTCTTCCTATC < 41bp 0.583542374286578 0.804519009484953 0.1465919 0.28229645 prediction 0.44195327039675 Functional Gain - HECTD2 ENSG00000165338 CDS Human protein_coding chr10:93220276 chr10:93220277 nonsynonymous SNV 0.913 1 22 hm5C_associated_SNPs_119223 0 0 0 1 93220255 93220278 mRNA hsa-miR-7 HECTD2 miRanda miRanda
9252 chr9 114431690 114431690 1 + A G rs187480988 114431687 + 114431667 114431707 41 TGGTCCTATAGCCAAAATCACAGATATTCATGAGTTTCTAC TGGTCCTATAGCCAAAATCACAGGTATTCATGAGTTTCTAC < 41bp 0.492324043584737 0.72087552880275 0.80191016 0.8983234 prediction 0.441751057605499 Functional Gain - DNAJC25-GNG10;GNG10 ENSG00000059769;ENSG00000242616;ENSG00000244115 UTR3 Human other chr9:114431687 chr9:114431690 . . 0 24 hm5C_associated_SNPs_119285 0 0 0 4 114431687 114431712 mRNA hsa-miR-26a GNG10 miRanda miRanda
9253 chr9 114431690 114431690 1 + A G rs187480988 114431687 + 114431667 114431707 41 TGGTCCTATAGCCAAAATCACAGATATTCATGAGTTTCTAC TGGTCCTATAGCCAAAATCACAGGTATTCATGAGTTTCTAC < 41bp 0.492324043584737 0.72087552880275 0.80191016 0.8983234 prediction 0.441751057605499 Functional Gain - DNAJC25-GNG10;GNG10 ENSG00000059769;ENSG00000242616;ENSG00000244115 UTR3 Human other chr9:114431687 chr9:114431690 . . 0 24 hm5C_associated_SNPs_119285 0 0 0 4 114431687 114431712 mRNA hsa-miR-26a DNAJC25-GNG10 miRanda miRanda
9254 chr9 114431690 114431690 1 + A G rs187480988 114431687 + 114431667 114431707 41 TGGTCCTATAGCCAAAATCACAGATATTCATGAGTTTCTAC TGGTCCTATAGCCAAAATCACAGGTATTCATGAGTTTCTAC < 41bp 0.492324043584737 0.72087552880275 0.80191016 0.8983234 prediction 0.441751057605499 Functional Gain - DNAJC25-GNG10;GNG10 ENSG00000059769;ENSG00000242616;ENSG00000244115 UTR3 Human other chr9:114431687 chr9:114431690 . . 0 24 hm5C_associated_SNPs_119285 0 0 0 4 114431688 114431712 mRNA hsa-miR-26b GNG10 miRanda miRanda
9255 chr9 114431690 114431690 1 + A G rs187480988 114431687 + 114431667 114431707 41 TGGTCCTATAGCCAAAATCACAGATATTCATGAGTTTCTAC TGGTCCTATAGCCAAAATCACAGGTATTCATGAGTTTCTAC < 41bp 0.492324043584737 0.72087552880275 0.80191016 0.8983234 prediction 0.441751057605499 Functional Gain - DNAJC25-GNG10;GNG10 ENSG00000059769;ENSG00000242616;ENSG00000244115 UTR3 Human other chr9:114431687 chr9:114431690 . . 0 24 hm5C_associated_SNPs_119285 0 0 0 4 114431688 114431712 mRNA hsa-miR-26b DNAJC25-GNG10 miRanda miRanda
9256 chr7 99997443 99997443 1 + C T rs140582389 99997442 + 99997422 99997462 41 CTATGCTTCCCTTGCCCTCTCCAGCTCCACCTCACCCAGAG CTATGCTTCCCTTGCCCTCTCTAGCTCCACCTCACCCAGAG < 41bp 0.480100781395617 0.720872888093462 0.038081706 0.0400742 prediction 0.441745776186924 Functional Gain - PILRA ENSG00000085514 CDS Human protein_coding chr7:99997442 chr7:99997443 synonymous SNV . 0 22 hm5C_associated_SNPs_119286 0 0 0 1 99997442 99997463 mRNA hsa-miR-330-5p PILRA miRanda miRanda
9257 chr5 35876484 35876484 1 + C T COAD 35876483 + 35876463 35876503 41 TTTTCTCTCCAATCTGGAATCCTGACATTGAACCCAGTTGC TTTTCTCTCCAATCTGGAATCTTGACATTGAACCCAGTTGC < 41bp 0.482707262498458 0.720688755254148 0.4534184 0.42465165 prediction 0.441377510508295 Functional Gain - IL7R ENSG00000168685 CDS Human protein_coding chr5:35876483 chr5:35876484 synonymous SNV . 0 22 hm5C_associated_SNPs_119362 0 0 0 2 35876484 35876506 mRNA hsa-miR-146a IL7R miRanda miRanda
9258 chr5 35876484 35876484 1 + C T COAD 35876483 + 35876463 35876503 41 TTTTCTCTCCAATCTGGAATCCTGACATTGAACCCAGTTGC TTTTCTCTCCAATCTGGAATCTTGACATTGAACCCAGTTGC < 41bp 0.482707262498458 0.720688755254148 0.4534184 0.42465165 prediction 0.441377510508295 Functional Gain - IL7R ENSG00000168685 CDS Human protein_coding chr5:35876483 chr5:35876484 synonymous SNV . 0 22 hm5C_associated_SNPs_119362 0 0 0 2 35876484 35876506 mRNA hsa-miR-146b-5p IL7R miRanda miRanda
9259 chr5 72470708 72470708 1 + T A rs4302564 72470704 + 72470684 72470724 41 GTCACAGTGACCCTTGGCTGCTGCTGTTCTCTTCTGCAAGG GTCACAGTGACCCTTGGCTGCTGCAGTTCTCTTCTGCAAGG < 41bp 0.618548607325053 0.83921332864716 0.0100569725 0.019638449 prediction 0.441329442644214 Functional Gain - TMEM174 ENSG00000164325 UTR3 Human protein_coding chr5:72470704 chr5:72470708 . . 0 25 hm5C_associated_SNPs_119375 0 0 0 6 72470688 72470709 mRNA hsa-miR-15a TMEM174 miRanda miRanda
9260 chr5 72470708 72470708 1 + T A rs4302564 72470704 + 72470684 72470724 41 GTCACAGTGACCCTTGGCTGCTGCTGTTCTCTTCTGCAAGG GTCACAGTGACCCTTGGCTGCTGCAGTTCTCTTCTGCAAGG < 41bp 0.618548607325053 0.83921332864716 0.0100569725 0.019638449 prediction 0.441329442644214 Functional Gain - TMEM174 ENSG00000164325 UTR3 Human protein_coding chr5:72470704 chr5:72470708 . . 0 25 hm5C_associated_SNPs_119375 0 0 0 6 72470688 72470709 mRNA hsa-miR-16 TMEM174 miRanda miRanda
9261 chr5 72470708 72470708 1 + T A rs4302564 72470704 + 72470684 72470724 41 GTCACAGTGACCCTTGGCTGCTGCTGTTCTCTTCTGCAAGG GTCACAGTGACCCTTGGCTGCTGCAGTTCTCTTCTGCAAGG < 41bp 0.618548607325053 0.83921332864716 0.0100569725 0.019638449 prediction 0.441329442644214 Functional Gain - TMEM174 ENSG00000164325 UTR3 Human protein_coding chr5:72470704 chr5:72470708 . . 0 25 hm5C_associated_SNPs_119375 0 0 0 6 72470689 72470709 mRNA hsa-miR-15b TMEM174 miRanda miRanda
9262 chr5 72470708 72470708 1 + T A rs4302564 72470704 + 72470684 72470724 41 GTCACAGTGACCCTTGGCTGCTGCTGTTCTCTTCTGCAAGG GTCACAGTGACCCTTGGCTGCTGCAGTTCTCTTCTGCAAGG < 41bp 0.618548607325053 0.83921332864716 0.0100569725 0.019638449 prediction 0.441329442644214 Functional Gain - TMEM174 ENSG00000164325 UTR3 Human protein_coding chr5:72470704 chr5:72470708 . . 0 25 hm5C_associated_SNPs_119375 0 0 0 6 72470689 72470709 mRNA hsa-miR-195 TMEM174 miRanda miRanda
9263 chr5 72470708 72470708 1 + T A rs4302564 72470704 + 72470684 72470724 41 GTCACAGTGACCCTTGGCTGCTGCTGTTCTCTTCTGCAAGG GTCACAGTGACCCTTGGCTGCTGCAGTTCTCTTCTGCAAGG < 41bp 0.618548607325053 0.83921332864716 0.0100569725 0.019638449 prediction 0.441329442644214 Functional Gain - TMEM174 ENSG00000164325 UTR3 Human protein_coding chr5:72470704 chr5:72470708 . . 0 25 hm5C_associated_SNPs_119375 0 0 0 6 72470688 72470709 mRNA hsa-miR-424 TMEM174 miRanda miRanda
9264 chr5 72470708 72470708 1 + T A rs4302564 72470704 + 72470684 72470724 41 GTCACAGTGACCCTTGGCTGCTGCTGTTCTCTTCTGCAAGG GTCACAGTGACCCTTGGCTGCTGCAGTTCTCTTCTGCAAGG < 41bp 0.618548607325053 0.83921332864716 0.0100569725 0.019638449 prediction 0.441329442644214 Functional Gain - TMEM174 ENSG00000164325 UTR3 Human protein_coding chr5:72470704 chr5:72470708 . . 0 25 hm5C_associated_SNPs_119375 0 0 0 6 72470689 72470709 mRNA hsa-miR-497 TMEM174 miRanda miRanda
9265 chr2 157406233 157406233 1 + C A HNSC 157406232 + 157406212 157406252 41 TTGCTCAAGAAGACAGACCCCCAGACAGGGAAAGTGCGTGT TTGCTCAAGAAGACAGACCCCAAGACAGGGAAAGTGCGTGT < 41bp 0.597917297885572 0.818473581497389 0.012445778 0.03145963 prediction 0.441112567223634 Functional Gain - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157406232 chr2:157406233 nonsynonymous SNV 0.633 0 22 hm5C_associated_SNPs_119416 0 0 0 1 157406220 157406242 mRNA hsa-miR-339-5p GPD2 miRanda miRanda
9266 chr12 69986785 69986785 1 + T C rs201962311 69986782 + 69986762 69986802 41 GGTTCCCGGGTAAGAGTTGACTCTACAGCAAAGGTTGCAGA GGTTCCCGGGTAAGAGTTGACTCCACAGCAAAGGTTGCAGA < 41bp 0.554773258360807 0.775310039457105 0.89400077 0.90733594 prediction 0.441073562192596 Functional Gain - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69986782 chr12:69986785 synonymous SNV . 0 24 hm5C_associated_SNPs_119427 0 0 1 1 69986783 69986804 mRNA hsa-miR-544 CCT2 miRanda miRanda
9267 chr17 7345106 7345106 1 + C T rs114518704 7345105 + 7345085 7345125 41 CCACCTGCAGCCCACTTCAACCTGATCCCTGTGGGCCTCCG CCACCTGCAGCCCACTTCAACTTGATCCCTGTGGGCCTCCG < 41bp 0.457914134440789 0.720477752443367 0.1498181 0.14055964 prediction 0.440955504886734 Functional Gain - FGF11 ENSG00000161958 CDS Human protein_coding chr17:7345105 chr17:7345106 synonymous SNV . 0 22 hm5C_associated_SNPs_119450 0 0 0 1 7345095 7345109 mRNA hsa-miR-125a-3p FGF11 miRanda miRanda
9268 chrX 35937926 35937926 1 + C G rs141633156 35937925 + 35937905 35937945 41 GAGAGGGCAGCCATGAACACCCAAAAGGGTTCCCTCACCAT GAGAGGGCAGCCATGAACACCGAAAAGGGTTCCCTCACCAT < 41bp 0.408440097936055 0.720457095134317 0.06082675 0.1154432 prediction 0.440914190268635 Functional Gain - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35937925 chrX:35937926 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_119463 0 0 0 1 35937921 35937943 mRNA hsa-miR-491-5p CXorf22 miRanda miRanda
9269 chr5 68551764 68551764 1 + C G rs141434516 68551760 + 68551740 68551780 41 TCCTGGGTTCCAGTGATTCTCTCACTTCAGCCTCCCAAGTA TCCTGGGTTCCAGTGATTCTCTCAGTTCAGCCTCCCAAGTA < 41bp 0.43200142028928 0.720428092519406 0.20923305 0.45574537 prediction 0.440856185038812 Functional Gain - CDK7 ENSG00000134058 intronic Human protein_coding chr5:68551760 chr5:68551764 . . 0 25 hm5C_associated_SNPs_119486 0 0 1 1 68551753 68551774 mRNA hsa-miR-485-5p CDK7 miRanda miRanda
9270 chr1 158065245 158065245 1 + C A rs182057331 158065241 + 158065221 158065261 41 TTAGCATTCCCTTTCTATCCCACCCCTCTGATCTCCCATAA TTAGCATTCCCTTTCTATCCCACCACTCTGATCTCCCATAA < 41bp 0.309049527895301 0.720424609967307 0.04384342 0.09796411 prediction 0.440849219934615 Functional Gain - KIRREL ENSG00000183853 UTR3 Human protein_coding chr1:158065241 chr1:158065245 . . 0 25 hm5C_associated_SNPs_119491 0 0 1 1 158065232 158065254 mRNA hsa-miR-383 KIRREL miRanda miRanda
9271 chr1 97243177 97243177 1 + C A COAD 97243176 + 97243156 97243196 41 CTTCAAGCTGTGACAGCTGTCCAGACAGCAAATACTCCTCT CTTCAAGCTGTGACAGCTGTCAAGACAGCAAATACTCCTCT < 41bp 0.541331560228508 0.761754815107602 0.36872774 0.8857846 prediction 0.440846509758188 Functional Gain - PTBP2 ENSG00000117569 CDS Human protein_coding chr1:97243176 chr1:97243177 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_119492 0 0 1 1 97243172 97243193 mRNA hsa-miR-496 PTBP2 miRanda miRanda
9272 chr3 32745388 32745388 1 + A G BLCA 32745385 + 32745365 32745405 41 GGAGCAGAGAAACATGAAGGCACAGGTCAGTCCTCTGGGAT GGAGCAGAGAAACATGAAGGCACGGGTCAGTCCTCTGGGAT < 41bp 0.545281861451856 0.765677993784902 0.4103789 0.87893665 prediction 0.440792264666091 Functional Gain - CNOT10 ENSG00000182973 CDS Human protein_coding chr3:32745385 chr3:32745388 synonymous SNV . 0 24 hm5C_associated_SNPs_119510 0 0 1 1 32745377 32745400 mRNA hsa-miR-485-5p CNOT10 miRanda miRanda
9273 chr1 151019552 151019552 1 + A G rs114154837 151019549 + 151019529 151019569 41 GGTTCAAGCCATTCTTCTGCCTCAGCCTCAGCGAGTAGCTG GGTTCAAGCCATTCTTCTGCCTCGGCCTCAGCGAGTAGCTG < 41bp 0.490751818432671 0.720163635847661 0.07658997 0.1627562 prediction 0.440327271695322 Functional Gain - BNIPL ENSG00000163141 UTR3 Human protein_coding chr1:151019549 chr1:151019552 . . 0 24 hm5C_associated_SNPs_119602 0 0 0 1 151019537 151019558 mRNA hsa-miR-485-5p BNIPL miRanda miRanda
9274 chr3 32804301 32804301 1 + C G STAD 32804300 + 32804280 32804320 41 GATGCCATTACTCACTTGAACCCGGAGAATGTCACTGATGT GATGCCATTACTCACTTGAACGCGGAGAATGTCACTGATGT < 41bp 0.410817706527188 0.720148229912842 0.1266694 0.4370625 prediction 0.440296459825684 Functional Gain - CNOT10 ENSG00000182973 CDS Human protein_coding chr3:32804300 chr3:32804301 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_119604 0 0 1 1 32804301 32804320 mRNA hsa-miR-128 CNOT10 miRanda miRanda
9275 chr10 35500663 35500663 1 + C G BRCA 35500662 + 35500642 35500682 41 CGAGTTGCAGTGCTGGAAGTCCAGAACAAGAAGCTTATAGA CGAGTTGCAGTGCTGGAAGTCGAGAACAAGAAGCTTATAGA < 41bp 0.582770731238518 0.802813417342544 0.46321017 0.43537524 prediction 0.440085372208051 Functional Gain - CREM ENSG00000095794 CDS Human protein_coding chr10:35500662 chr10:35500663 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_119646 0 0 1 2 35500646 35500666 mRNA hsa-miR-378 CREM miRanda miRanda
9276 chr10 35500663 35500663 1 + C G BRCA 35500662 + 35500642 35500682 41 CGAGTTGCAGTGCTGGAAGTCCAGAACAAGAAGCTTATAGA CGAGTTGCAGTGCTGGAAGTCGAGAACAAGAAGCTTATAGA < 41bp 0.582770731238518 0.802813417342544 0.46321017 0.43537524 prediction 0.440085372208051 Functional Gain - CREM ENSG00000095794 CDS Human protein_coding chr10:35500662 chr10:35500663 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_119646 0 0 1 2 35500644 35500666 mRNA hsa-miR-422a CREM miRanda miRanda
9277 chr14 23239068 23239068 1 + C T COAD 23239067 + 23239047 23239087 41 CAGCGAGAGGCAGCCAGGATCCACAATCACTTGCCAGAGAT CAGCGAGAGGCAGCCAGGATCTACAATCACTTGCCAGAGAT < 41bp 0.623985639760678 0.843934335746906 0.10562745 0.90562785 prediction 0.439897391972455 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239067 chr14:23239068 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_119689 0 0 1 2 23239061 23239082 mRNA hsa-miR-449a OXA1L miRanda miRanda
9278 chr14 23239068 23239068 1 + C T COAD 23239067 + 23239047 23239087 41 CAGCGAGAGGCAGCCAGGATCCACAATCACTTGCCAGAGAT CAGCGAGAGGCAGCCAGGATCTACAATCACTTGCCAGAGAT < 41bp 0.623985639760678 0.843934335746906 0.10562745 0.90562785 prediction 0.439897391972455 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239067 chr14:23239068 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_119689 0 0 1 2 23239061 23239082 mRNA hsa-miR-449b OXA1L miRanda miRanda
9279 chr1 229433272 229433272 1 + C T OV 229433271 + 229433251 229433291 41 ACTAATTGGTTAACAGATGCCCGAATGCTAGCGAGCCAGAA ACTAATTGGTTAACAGATGCCTGAATGCTAGCGAGCCAGAA < 41bp 0.596920545816917 0.816828606037699 0.14904532 0.10829428 prediction 0.439816120441564 Functional Gain - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229433271 chr1:229433272 stopgain 0.999 1 22 hm5C_associated_SNPs_119707 0 0 1 3 229433261 229433283 mRNA hsa-miR-222 RAB4A miRanda miRanda
9280 chr1 229433272 229433272 1 + C T OV 229433271 + 229433251 229433291 41 ACTAATTGGTTAACAGATGCCCGAATGCTAGCGAGCCAGAA ACTAATTGGTTAACAGATGCCTGAATGCTAGCGAGCCAGAA < 41bp 0.596920545816917 0.816828606037699 0.14904532 0.10829428 prediction 0.439816120441564 Functional Gain - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229433271 chr1:229433272 stopgain 0.999 1 22 hm5C_associated_SNPs_119707 0 0 1 3 229433267 229433283 mRNA hsa-miR-222 RAB4A miRanda miRanda
9281 chr1 229433272 229433272 1 + C T OV 229433271 + 229433251 229433291 41 ACTAATTGGTTAACAGATGCCCGAATGCTAGCGAGCCAGAA ACTAATTGGTTAACAGATGCCTGAATGCTAGCGAGCCAGAA < 41bp 0.596920545816917 0.816828606037699 0.14904532 0.10829428 prediction 0.439816120441564 Functional Gain - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229433271 chr1:229433272 stopgain 0.999 1 22 hm5C_associated_SNPs_119707 0 0 1 3 229433267 229433290 mRNA hsa-miR-149 RAB4A miRanda miRanda
9282 chr2 208425875 208425875 1 + C A HNSC 208425874 + 208425854 208425894 41 GGACTTAAAAAGACTTTTCTCCGGAACACAGGTGAGTCCTA GGACTTAAAAAGACTTTTCTCAGGAACACAGGTGAGTCCTA < 41bp 0.471027078705096 0.719747582568205 0.5175705 0.907892 prediction 0.43949516513641 Functional Gain - CREB1 ENSG00000118260 CDS Human protein_coding chr2:208425874 chr2:208425875 synonymous SNV . 0 22 hm5C_associated_SNPs_119783 0 0 1 2 208425870 208425884 mRNA hsa-miR-203 CREB1 miRanda miRanda
9283 chr2 208425875 208425875 1 + C A HNSC 208425874 + 208425854 208425894 41 GGACTTAAAAAGACTTTTCTCCGGAACACAGGTGAGTCCTA GGACTTAAAAAGACTTTTCTCAGGAACACAGGTGAGTCCTA < 41bp 0.471027078705096 0.719747582568205 0.5175705 0.907892 prediction 0.43949516513641 Functional Gain - CREB1 ENSG00000118260 CDS Human protein_coding chr2:208425874 chr2:208425875 synonymous SNV . 0 22 hm5C_associated_SNPs_119783 0 0 1 2 208425874 208425884 mRNA hsa-miR-653 CREB1 miRanda miRanda
9284 chr11 71806473 71806473 1 + T G rs148344989 71806470 + 71806450 71806490 41 CGTATCACCACGTTCGACTTCAGTGGGGTCACCAAAGCAGA CGTATCACCACGTTCGACTTCAGGGGGGTCACCAAAGCAGA < 41bp 0.322470704091159 0.719724297412002 0.3442142 0.9226842 prediction 0.439448594824004 Functional Gain - LRTOMT ENSG00000184154 CDS Human protein_coding chr11:71806470 chr11:71806473 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_119802 0 0 0 1 71806465 71806487 mRNA hsa-miR-9 LRTOMT miRanda miRanda
9285 chr2 66798500 66798500 1 + C T UCEC 66798499 + 66798479 66798519 41 GCTCAGCTGCGTCATGGGCCCCCCATGCATACGTACATTCC GCTCAGCTGCGTCATGGGCCCTCCATGCATACGTACATTCC < 41bp 0.522710802602406 0.742274030163656 0.039937288 0.9491337 prediction 0.4391264551225 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66798499 chr2:66798500 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_119878 0 0 0 3 66798499 66798520 mRNA hsa-miR-1 MEIS1 miRanda miRanda
9286 chr2 66798500 66798500 1 + C T UCEC 66798499 + 66798479 66798519 41 GCTCAGCTGCGTCATGGGCCCCCCATGCATACGTACATTCC GCTCAGCTGCGTCATGGGCCCTCCATGCATACGTACATTCC < 41bp 0.522710802602406 0.742274030163656 0.039937288 0.9491337 prediction 0.4391264551225 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66798499 chr2:66798500 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_119878 0 0 0 3 66798499 66798520 mRNA hsa-miR-206 MEIS1 miRanda miRanda
9287 chr2 66798500 66798500 1 + C T UCEC 66798499 + 66798479 66798519 41 GCTCAGCTGCGTCATGGGCCCCCCATGCATACGTACATTCC GCTCAGCTGCGTCATGGGCCCTCCATGCATACGTACATTCC < 41bp 0.522710802602406 0.742274030163656 0.039937288 0.9491337 prediction 0.4391264551225 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66798499 chr2:66798500 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_119878 0 0 0 3 66798500 66798520 mRNA hsa-miR-613 MEIS1 miRanda miRanda
9288 chr19 50386990 50386990 1 + C T UCEC 50386989 + 50386969 50387009 41 AACTCACTTCTGCATGGATACCGCAGCCTCATCGGTCAGTG AACTCACTTCTGCATGGATACTGCAGCCTCATCGGTCAGTG < 41bp 0.608409179599807 0.82786981981487 0.26543272 0.39831686 prediction 0.438921280430127 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50386989 chr19:50386990 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_119923 0 0 1 3 50386987 50387002 mRNA hsa-miR-204 TBC1D17 miRanda miRanda
9289 chr19 50386990 50386990 1 + C T UCEC 50386989 + 50386969 50387009 41 AACTCACTTCTGCATGGATACCGCAGCCTCATCGGTCAGTG AACTCACTTCTGCATGGATACTGCAGCCTCATCGGTCAGTG < 41bp 0.608409179599807 0.82786981981487 0.26543272 0.39831686 prediction 0.438921280430127 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50386989 chr19:50386990 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_119923 0 0 1 3 50386987 50387002 mRNA hsa-miR-211 TBC1D17 miRanda miRanda
9290 chr19 50386990 50386990 1 + C T UCEC 50386989 + 50386969 50387009 41 AACTCACTTCTGCATGGATACCGCAGCCTCATCGGTCAGTG AACTCACTTCTGCATGGATACTGCAGCCTCATCGGTCAGTG < 41bp 0.608409179599807 0.82786981981487 0.26543272 0.39831686 prediction 0.438921280430127 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50386989 chr19:50386990 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_119923 0 0 1 3 50386980 50386999 mRNA hsa-miR-485-5p TBC1D17 miRanda miRanda
9291 chr14 57863536 57863536 1 + C T STAD 57863535 + 57863515 57863555 41 GATATGCACAAAAAGATGTTCCGCAGAGGTTATATAGCCAT GATATGCACAAAAAGATGTTCTGCAGAGGTTATATAGCCAT < 41bp 0.455761705595771 0.719341416152718 0.19738877 0.16759217 prediction 0.438682832305437 Functional Gain - NAA30 ENSG00000139977 CDS Human protein_coding chr14:57863535 chr14:57863536 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_119985 0 0 1 1 57863530 57863550 mRNA hsa-miR-410 NAA30 miRanda miRanda
9292 chr1 153005071 153005071 1 + C A READ 153005067 + 153005047 153005087 41 ATAGTCACTCCAGCACCAGCCCAGCAGAAGACCAAGCAGAA ATAGTCACTCCAGCACCAGCCCAGAAGAAGACCAAGCAGAA < 41bp 0.327925852079466 0.719328537833082 0.26844478 0.2735203 prediction 0.438657075666165 Functional Gain - SPRR1B ENSG00000169469 CDS Human protein_coding chr1:153005067 chr1:153005071 nonsynonymous SNV 0.966 1 25 hm5C_associated_SNPs_119992 0 0 0 1 153005052 153005074 mRNA hsa-miR-330-5p SPRR1B miRanda miRanda
9293 chr10 75557714 75557714 1 + C T LUAD 75557713 + 75557693 75557733 41 GGGGGCCACCAGGGTCCTCACCGCAACCTGCACCTTTGCGC GGGGGCCACCAGGGTCCTCACTGCAACCTGCACCTTTGCGC < 41bp 0.613871644215391 0.832969913927378 0.54047406 0.41368192 prediction 0.438196539423973 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75557713 chr10:75557714 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_120100 0 0 1 2 75557707 75557729 mRNA hsa-miR-18a KIAA0913 miRanda miRanda
9294 chr10 75557714 75557714 1 + C T LUAD 75557713 + 75557693 75557733 41 GGGGGCCACCAGGGTCCTCACCGCAACCTGCACCTTTGCGC GGGGGCCACCAGGGTCCTCACTGCAACCTGCACCTTTGCGC < 41bp 0.613871644215391 0.832969913927378 0.54047406 0.41368192 prediction 0.438196539423973 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75557713 chr10:75557714 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_120100 0 0 1 2 75557709 75557729 mRNA hsa-miR-18b KIAA0913 miRanda miRanda
9295 chr12 111078279 111078279 1 + T C UCEC 111078277 + 111078257 111078297 41 GATGTGCTGCAGCCGACTCTCGTCAACGCTGGACACTTTAG GATGTGCTGCAGCCGACTCTCGCCAACGCTGGACACTTTAG < 41bp 0.606868290847009 0.825959919828796 0.16931981 0.42052954 prediction 0.438183257963573 Functional Gain - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111078277 chr12:111078279 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_120103 0 0 0 1 111078273 111078296 mRNA hsa-miR-519d TCTN1 miRanda miRanda
9296 chr1 48705048 48705048 1 + C T OV 48705047 + 48705027 48705067 41 GTGGGGCTTCTGCGTATGATCCTGGAGTTCTCATACCCAGC GTGGGGCTTCTGCGTATGATCTTGGAGTTCTCATACCCAGC < 41bp 0.478798475207628 0.719059742946144 0.25997078 0.1833944 prediction 0.438119485892288 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48705047 chr1:48705048 synonymous SNV . 0 22 hm5C_associated_SNPs_120124 0 0 0 2 48705035 48705059 mRNA hsa-miR-146a SLC5A9 miRanda miRanda
9297 chr1 48705048 48705048 1 + C T OV 48705047 + 48705027 48705067 41 GTGGGGCTTCTGCGTATGATCCTGGAGTTCTCATACCCAGC GTGGGGCTTCTGCGTATGATCTTGGAGTTCTCATACCCAGC < 41bp 0.478798475207628 0.719059742946144 0.25997078 0.1833944 prediction 0.438119485892288 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48705047 chr1:48705048 synonymous SNV . 0 22 hm5C_associated_SNPs_120124 0 0 0 2 48705037 48705059 mRNA hsa-miR-146b-5p SLC5A9 miRanda miRanda
9298 chr20 36488339 36488339 1 + C T STAD 36488338 + 36488318 36488358 41 AGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCTCC AGAGATCATCGACAATGACACTGAGGAGGAGTTCTACCTCC < 41bp 0.552310407578842 0.771328270163755 0.30866677 0.33575696 prediction 0.438035725169825 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488338 chr20:36488339 synonymous SNV . 0 22 hm5C_associated_SNPs_120149 0 0 1 6 36488337 36488358 mRNA hsa-let-7a CTNNBL1 miRanda miRanda
9299 chr20 36488339 36488339 1 + C T STAD 36488338 + 36488318 36488358 41 AGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCTCC AGAGATCATCGACAATGACACTGAGGAGGAGTTCTACCTCC < 41bp 0.552310407578842 0.771328270163755 0.30866677 0.33575696 prediction 0.438035725169825 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488338 chr20:36488339 synonymous SNV . 0 22 hm5C_associated_SNPs_120149 0 0 1 6 36488337 36488358 mRNA hsa-let-7b CTNNBL1 miRanda miRanda
9300 chr20 36488339 36488339 1 + C T STAD 36488338 + 36488318 36488358 41 AGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCTCC AGAGATCATCGACAATGACACTGAGGAGGAGTTCTACCTCC < 41bp 0.552310407578842 0.771328270163755 0.30866677 0.33575696 prediction 0.438035725169825 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488338 chr20:36488339 synonymous SNV . 0 22 hm5C_associated_SNPs_120149 0 0 1 6 36488337 36488358 mRNA hsa-let-7c CTNNBL1 miRanda miRanda
9301 chr20 36488339 36488339 1 + C T STAD 36488338 + 36488318 36488358 41 AGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCTCC AGAGATCATCGACAATGACACTGAGGAGGAGTTCTACCTCC < 41bp 0.552310407578842 0.771328270163755 0.30866677 0.33575696 prediction 0.438035725169825 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488338 chr20:36488339 synonymous SNV . 0 22 hm5C_associated_SNPs_120149 0 0 1 6 36488337 36488358 mRNA hsa-let-7d CTNNBL1 miRanda miRanda
9302 chr20 36488339 36488339 1 + C T STAD 36488338 + 36488318 36488358 41 AGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCTCC AGAGATCATCGACAATGACACTGAGGAGGAGTTCTACCTCC < 41bp 0.552310407578842 0.771328270163755 0.30866677 0.33575696 prediction 0.438035725169825 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488338 chr20:36488339 synonymous SNV . 0 22 hm5C_associated_SNPs_120149 0 0 1 6 36488337 36488358 mRNA hsa-let-7e CTNNBL1 miRanda miRanda
9303 chr20 36488339 36488339 1 + C T STAD 36488338 + 36488318 36488358 41 AGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCTCC AGAGATCATCGACAATGACACTGAGGAGGAGTTCTACCTCC < 41bp 0.552310407578842 0.771328270163755 0.30866677 0.33575696 prediction 0.438035725169825 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488338 chr20:36488339 synonymous SNV . 0 22 hm5C_associated_SNPs_120149 0 0 1 6 36488337 36488358 mRNA hsa-let-7f CTNNBL1 miRanda miRanda
9304 chr1 4472376 4472376 1 + T A rs114060995 4472372 + 4472352 4472392 41 ACTGTTAACGGCCTGACCATCACCTGATGAATATCAGGAAT ACTGTTAACGGCCTGACCATCACCAGATGAATATCAGGAAT < 41bp 0.420060467312701 0.71884210955177 0.35400814 0.23312226 prediction 0.43768421910354 Functional Gain - LINC01777 ENSG00000235054 ncRNA_exonic Human lincRNA chr1:4472372 chr1:4472376 . . 0 25 hm5C_associated_SNPs_120227 0 0 0 1 4472357 4472378 mRNA hsa-miR-125a-3p LOC284661 miRanda miRanda
9305 chr4 41985478 41985478 1 + A G rs2660334 41985475 + 41985455 41985495 41 AGACAAGGGAGAGGTAATTTCTCAGAGTCTCTACAGAAATA AGACAAGGGAGAGGTAATTTCTCGGAGTCTCTACAGAAATA < 41bp 0.511034994601615 0.729874241928437 0.17535189 0.35698012 prediction 0.437678494653645 Functional Gain - DCAF4L1 ENSG00000182308 UTR3 Human protein_coding chr4:41985475 chr4:41985478 . . 0 24 hm5C_associated_SNPs_120230 0 0 0 1 41985457 41985478 mRNA hsa-miR-539 DCAF4L1 miRanda miRanda
9306 chr21 34636112 34636112 1 + A G rs142225927 34636109 + 34636089 34636129 41 TACCAGGGAGCAGGGTTCCCCACAGTTTCAGAGGTGGTCCA TACCAGGGAGCAGGGTTCCCCACGGTTTCAGAGGTGGTCCA < 41bp 0.557502208933832 0.776126640599373 0.09119761 0.5897919 prediction 0.437248863331083 Functional Gain - IFNAR2 ENSG00000159110 UTR3 Human protein_coding chr21:34636109 chr21:34636112 . . 0 24 hm5C_associated_SNPs_120328 0 0 1 2 34636098 34636119 mRNA hsa-miR-203 IFNAR2 miRanda miRanda
9307 chr21 34636112 34636112 1 + A G rs142225927 34636109 + 34636089 34636129 41 TACCAGGGAGCAGGGTTCCCCACAGTTTCAGAGGTGGTCCA TACCAGGGAGCAGGGTTCCCCACGGTTTCAGAGGTGGTCCA < 41bp 0.557502208933832 0.776126640599373 0.09119761 0.5897919 prediction 0.437248863331083 Functional Gain - IFNAR2 ENSG00000159110 UTR3 Human protein_coding chr21:34636109 chr21:34636112 . . 0 24 hm5C_associated_SNPs_120328 0 0 1 2 34636089 34636112 mRNA hsa-miR-491-5p IFNAR2 miRanda miRanda
9308 chr21 23470939 23470939 1 + A G rs538088943 23470936 + 23470916 23470956 41 TGGTGCAATTAAGGTATGCACAGATAAGACTCTGTCTACCC TGGTGCAATTAAGGTATGCACAGGTAAGACTCTGTCTACCC < 41bp 0.497904231345815 0.718621919306844 0.5977578 0.81904995 prediction 0.437243838613687 Functional Gain - LINC00308 ENSG00000184856 ncRNA_exonic Human lincRNA chr21:23470936 chr21:23470939 . . 0 24 hm5C_associated_SNPs_120330 0 0 0 2 23470936 23470956 mRNA hsa-miR-379 C21orf74 miRanda miRanda
9309 chr21 23470939 23470939 1 + A G rs538088943 23470936 + 23470916 23470956 41 TGGTGCAATTAAGGTATGCACAGATAAGACTCTGTCTACCC TGGTGCAATTAAGGTATGCACAGGTAAGACTCTGTCTACCC < 41bp 0.497904231345815 0.718621919306844 0.5977578 0.81904995 prediction 0.437243838613687 Functional Gain - LINC00308 ENSG00000184856 ncRNA_exonic Human lincRNA chr21:23470936 chr21:23470939 . . 0 24 hm5C_associated_SNPs_120330 0 0 0 2 23470936 23470955 mRNA hsa-miR-542-3p C21orf74 miRanda miRanda
9310 chr17 37815004 37815004 1 + C T UCEC 37815003 + 37814983 37815023 41 GCCGCCCAGGTTGCTGTTGCCCGTGGACCCCTGCTGTTCTC GCCGCCCAGGTTGCTGTTGCCTGTGGACCCCTGCTGTTCTC < 41bp 0.580988509124769 0.799458837323927 0.0326142 0.0060105026 prediction 0.436940656398316 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37815003 chr17:37815004 nonsynonymous SNV 0.901 2 22 hm5C_associated_SNPs_120401 0 0 1 1 37814998 37815019 mRNA hsa-miR-214 STARD3 miRanda miRanda
9311 chr10 135123764 135123764 1 + C T HNSC 135123763 + 135123743 135123783 41 CACCTGTACCCCGCGGACTTCCGGTTTGATAAGCCAAAGAA CACCTGTACCCCGCGGACTTCTGGTTTGATAAGCCAAAGAA < 41bp 0.456340114396163 0.718460002646166 0.6168735 0.49564153 prediction 0.436920005292332 Functional Gain - ZNF511 ENSG00000198546 CDS Human protein_coding chr10:135123763 chr10:135123764 nonsynonymous SNV 0.913 5 22 hm5C_associated_SNPs_120412 0 0 1 1 135123759 135123782 mRNA hsa-miR-9 ZNF511 miRanda miRanda
9312 chr16 15681512 15681512 1 + C G rs185880129 15681511 + 15681491 15681531 41 ACTCCACCATTCCGGGGCCACCACAGAGATGCCAGCAGGAT ACTCCACCATTCCGGGGCCACGACAGAGATGCCAGCAGGAT < 41bp 0.645610750980355 0.864065773125117 0.13925391 0.3204937 prediction 0.436910044289523 Functional Gain - C16orf45 ENSG00000166780 UTR3 Human protein_coding chr16:15681511 chr16:15681512 . . 0 22 hm5C_associated_SNPs_120415 0 0 0 1 15681509 15681530 mRNA hsa-miR-370 C16orf45 miRanda miRanda
9313 chr19 36205601 36205601 1 + C T STAD 36205600 + 36205580 36205620 41 GTACAGCTAGCAGCCAGGCTCCGGCCAGCACTCTGTGATAC GTACAGCTAGCAGCCAGGCTCTGGCCAGCACTCTGTGATAC < 41bp 0.555934623876164 0.774373692268814 0.2507746 0.30432045 prediction 0.436878136785298 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205600 chr19:36205601 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_120420 0 0 0 1 36205592 36205613 mRNA hsa-miR-485-5p ZBTB32 miRanda miRanda
9314 chr6 39033979 39033979 1 + C A LUAD 39033978 + 39033958 39033998 41 CCCCGTGTGCCACAGAGCTCCCCGGAGGAGCAGCTCCTGTT CCCCGTGTGCCACAGAGCTCCACGGAGGAGCAGCTCCTGTT < 41bp 0.453136617202883 0.718428042977705 0.5724912 0.8611485 prediction 0.43685608595541 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39033978 chr6:39033979 nonsynonymous SNV 0.140 0 22 hm5C_associated_SNPs_120427 0 0 0 2 39033975 39033996 mRNA hsa-miR-28-5p GLP1R miRanda miRanda
9315 chr6 39033979 39033979 1 + C A LUAD 39033978 + 39033958 39033998 41 CCCCGTGTGCCACAGAGCTCCCCGGAGGAGCAGCTCCTGTT CCCCGTGTGCCACAGAGCTCCACGGAGGAGCAGCTCCTGTT < 41bp 0.453136617202883 0.718428042977705 0.5724912 0.8611485 prediction 0.43685608595541 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39033978 chr6:39033979 nonsynonymous SNV 0.140 0 22 hm5C_associated_SNPs_120427 0 0 0 2 39033974 39033996 mRNA hsa-miR-708 GLP1R miRanda miRanda
9316 chr20 43566787 43566787 1 + A G rs11780 43566784 + 43566764 43566804 41 ATGCTGCTGGAGATTGACAACTCAGAGCTGTTGCTCATGCT ATGCTGCTGGAGATTGACAACTCGGAGCTGTTGCTCATGCT < 41bp 0.569912898586772 0.788265057453112 0.2643053 0.25442892 prediction 0.436704317732679 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43566784 chr20:43566787 nonsynonymous SNV 0.949 1 24 hm5C_associated_SNPs_120455 0 0 1 1 43566786 43566807 mRNA hsa-miR-338-3p PABPC1L miRanda miRanda
9317 chr18 21735737 21735737 1 + T C UCEC 21735734 + 21735714 21735754 41 AAAAGAACCAGGAAAAACATCTGTAGAATCTAAAGTACCTA AAAAGAACCAGGAAAAACATCTGCAGAATCTAAAGTACCTA < 41bp 0.518264243607217 0.736593780607555 0.21551514 0.24582618 prediction 0.436659074000676 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21735734 chr18:21735737 nonsynonymous SNV 0.025 0 24 hm5C_associated_SNPs_120469 0 0 0 1 21735719 21735740 mRNA hsa-miR-139-5p CABYR miRanda miRanda
9318 chr15 85188820 85188820 1 - G C SKCM 85188821 - 85188801 85188841 41 GCGTCTTTGTCTTCTTGACCCCCGGGATCTCTGCCATCCTG GCGTCTTTGTCTTCTTGACCCGCGGGATCTCTGCCATCCTG < 41bp 0.668918392263259 0.887140101749015 0.2801754 0.92530584 prediction 0.436443418971512 Functional Gain - WDR73 ENSG00000177082 CDS Human protein_coding chr15:85188821 chr15:85188820 synonymous SNV . 0 22 hm5C_associated_SNPs_120520 0 0 1 1 85188806 85188827 mRNA hsa-miR-31 WDR73 miRanda miRanda
9319 chr4 144481153 144481153 1 + T C UCEC 144481151 + 144481131 144481171 41 CGCCTCCGCATCACTATCACCATCGGCAACATGCTCATCTC CGCCTCCGCATCACTATCACCACCGGCAACATGCTCATCTC < 41bp 0.565938967199317 0.784131854665652 0.28798074 0.37974492 prediction 0.43638577493267 Functional Gain - GUSBP5 ENSG00000236296 ncRNA_exonic Human transcribed_processed_pseudogene chr4:144481151 chr4:144481153 . . 0 23 hm5C_associated_SNPs_120527 0 0 0 1 144481153 144481176 mRNA hsa-miR-185 LOC441046 miRanda miRanda
9320 chr16 67208993 67208993 1 + C G rs201000974 67208989 + 67208969 67209009 41 CTGACAGGCGGTGCCCCGCCCATGCTGGATAGGACCTGGGA CTGACAGGCGGTGCCCCGCCCATGGTGGATAGGACCTGGGA < 41bp 0.421532976751598 0.718174753930709 0.09226197 0.33062547 prediction 0.436349507861419 Functional Gain - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208989 chr16:67208993 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_120539 0 0 1 1 67208993 67209013 mRNA hsa-miR-324-5p NOL3 miRanda miRanda
9321 chr21 43557662 43557662 1 + A G rs150147965 43557659 + 43557639 43557679 41 CCCTTCTGATCGTGCGCTACCAGAGAATGAATGGGAGATAC CCCTTCTGATCGTGCGCTACCAGGGAATGAATGGGAGATAC < 41bp 0.554155478976846 0.772311400875011 0.8148218 0.90944874 prediction 0.436311843796329 Functional Gain - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43557659 chr21:43557662 nonsynonymous SNV 0.025 3 24 hm5C_associated_SNPs_120546 0 0 0 2 43557655 43557676 mRNA hsa-miR-150 UMODL1 miRanda miRanda
9322 chr21 43557662 43557662 1 + A G rs150147965 43557659 + 43557639 43557679 41 CCCTTCTGATCGTGCGCTACCAGAGAATGAATGGGAGATAC CCCTTCTGATCGTGCGCTACCAGGGAATGAATGGGAGATAC < 41bp 0.554155478976846 0.772311400875011 0.8148218 0.90944874 prediction 0.436311843796329 Functional Gain - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43557659 chr21:43557662 nonsynonymous SNV 0.025 3 24 hm5C_associated_SNPs_120546 0 0 0 2 43557662 43557685 mRNA hsa-miR-382 UMODL1 miRanda miRanda
9323 chr15 75190031 75190031 1 + C T UCEC 75190030 + 75190010 75190050 41 TCTCACTGAAGCTTACTGAGCCGAAGGACCTGCTGATATTC TCTCACTGAAGCTTACTGAGCTGAAGGACCTGCTGATATTC < 41bp 0.571818587066886 0.789950524953975 0.46081233 0.21189332 prediction 0.436263875774178 Functional Gain - MPI ENSG00000178802 CDS Human protein_coding chr15:75190030 chr15:75190031 nonsynonymous SNV 0.369 1 22 hm5C_associated_SNPs_120564 0 0 1 2 75190012 75190032 mRNA hsa-miR-24 MPI miRanda miRanda
9324 chr15 75190031 75190031 1 + C T UCEC 75190030 + 75190010 75190050 41 TCTCACTGAAGCTTACTGAGCCGAAGGACCTGCTGATATTC TCTCACTGAAGCTTACTGAGCTGAAGGACCTGCTGATATTC < 41bp 0.571818587066886 0.789950524953975 0.46081233 0.21189332 prediction 0.436263875774178 Functional Gain - MPI ENSG00000178802 CDS Human protein_coding chr15:75190030 chr15:75190031 nonsynonymous SNV 0.369 1 22 hm5C_associated_SNPs_120564 0 0 1 2 75190024 75190045 mRNA hsa-miR-214 MPI miRanda miRanda
9325 chr4 39482269 39482269 1 + C T SKCM 39482268 + 39482248 39482288 41 GTGTCCTCCGTGAAATTCAGCCCGAATGGAGAGTGGCTGGC GTGTCCTCCGTGAAATTCAGCTCGAATGGAGAGTGGCTGGC < 41bp 0.51237450146813 0.730444039073612 0.05471301 0.14102677 prediction 0.436139075210963 Functional Gain - LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482268 chr4:39482269 . . 0 22 hm5C_associated_SNPs_120597 0 0 1 2 39482268 39482286 mRNA hsa-miR-197 LOC401127 miRanda miRanda
9326 chr4 39482269 39482269 1 + C T SKCM 39482268 + 39482248 39482288 41 GTGTCCTCCGTGAAATTCAGCCCGAATGGAGAGTGGCTGGC GTGTCCTCCGTGAAATTCAGCTCGAATGGAGAGTGGCTGGC < 41bp 0.51237450146813 0.730444039073612 0.05471301 0.14102677 prediction 0.436139075210963 Functional Gain - LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482268 chr4:39482269 . . 0 22 hm5C_associated_SNPs_120597 0 0 1 2 39482257 39482279 mRNA hsa-miR-136 LOC401127 miRanda miRanda
9327 chr15 85188819 85188819 1 - G A BLCA 85188820 - 85188800 85188840 41 CGTCTTTGTCTTCTTGACCCCCGGGATCTCTGCCATCCTGT CGTCTTTGTCTTCTTGACCCCTGGGATCTCTGCCATCCTGT < 41bp 0.55124508844249 0.769306461023381 0.91170275 0.36133844 prediction 0.436122745161783 Functional Gain - WDR73 ENSG00000177082 CDS Human protein_coding chr15:85188820 chr15:85188819 nonsynonymous SNV 0.942 4 22 hm5C_associated_SNPs_120602 0 0 1 1 85188806 85188827 mRNA hsa-miR-31 WDR73 miRanda miRanda
9328 chr8 70517160 70517160 1 + C T UCEC 70517159 + 70517139 70517179 41 ACCAGACAGCCTGTGAACAACCGGGGCAGGTGAGTGACGCA ACCAGACAGCCTGTGAACAACTGGGGCAGGTGAGTGACGCA < 41bp 0.58757194445844 0.805628968892142 0.8516873 0.72270846 prediction 0.436114048867404 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70517159 chr8:70517160 nonsynonymous SNV 0.898 2 22 hm5C_associated_SNPs_120604 0 0 0 4 70517154 70517167 mRNA hsa-miR-25 SULF1 miRanda miRanda
9329 chr8 70517160 70517160 1 + C T UCEC 70517159 + 70517139 70517179 41 ACCAGACAGCCTGTGAACAACCGGGGCAGGTGAGTGACGCA ACCAGACAGCCTGTGAACAACTGGGGCAGGTGAGTGACGCA < 41bp 0.58757194445844 0.805628968892142 0.8516873 0.72270846 prediction 0.436114048867404 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70517159 chr8:70517160 nonsynonymous SNV 0.898 2 22 hm5C_associated_SNPs_120604 0 0 0 4 70517154 70517167 mRNA hsa-miR-92a SULF1 miRanda miRanda
9330 chr8 70517160 70517160 1 + C T UCEC 70517159 + 70517139 70517179 41 ACCAGACAGCCTGTGAACAACCGGGGCAGGTGAGTGACGCA ACCAGACAGCCTGTGAACAACTGGGGCAGGTGAGTGACGCA < 41bp 0.58757194445844 0.805628968892142 0.8516873 0.72270846 prediction 0.436114048867404 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70517159 chr8:70517160 nonsynonymous SNV 0.898 2 22 hm5C_associated_SNPs_120604 0 0 0 4 70517156 70517167 mRNA hsa-miR-367 SULF1 miRanda miRanda
9331 chr8 70517160 70517160 1 + C T UCEC 70517159 + 70517139 70517179 41 ACCAGACAGCCTGTGAACAACCGGGGCAGGTGAGTGACGCA ACCAGACAGCCTGTGAACAACTGGGGCAGGTGAGTGACGCA < 41bp 0.58757194445844 0.805628968892142 0.8516873 0.72270846 prediction 0.436114048867404 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70517159 chr8:70517160 nonsynonymous SNV 0.898 2 22 hm5C_associated_SNPs_120604 0 0 0 4 70517154 70517167 mRNA hsa-miR-92b SULF1 miRanda miRanda
9332 chr20 33513944 33513944 1 + T C LUAD 33513941 + 33513921 33513961 41 TACAGCAGAGGTGGAGTCAGCACTTGTGGAACATGAGGCTG TACAGCAGAGGTGGAGTCAGCACCTGTGGAACATGAGGCTG < 41bp 0.507481604487088 0.725479722367093 0.26602653 0.24123502 prediction 0.435996235760008 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33513941 chr20:33513944 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_120626 0 0 1 12 33513922 33513946 mRNA hsa-miR-302a ACSS2 miRanda miRanda
9333 chr20 33513944 33513944 1 + T C LUAD 33513941 + 33513921 33513961 41 TACAGCAGAGGTGGAGTCAGCACTTGTGGAACATGAGGCTG TACAGCAGAGGTGGAGTCAGCACCTGTGGAACATGAGGCTG < 41bp 0.507481604487088 0.725479722367093 0.26602653 0.24123502 prediction 0.435996235760008 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33513941 chr20:33513944 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_120626 0 0 1 12 33513921 33513946 mRNA hsa-miR-302b ACSS2 miRanda miRanda
9334 chr20 33513944 33513944 1 + T C LUAD 33513941 + 33513921 33513961 41 TACAGCAGAGGTGGAGTCAGCACTTGTGGAACATGAGGCTG TACAGCAGAGGTGGAGTCAGCACCTGTGGAACATGAGGCTG < 41bp 0.507481604487088 0.725479722367093 0.26602653 0.24123502 prediction 0.435996235760008 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33513941 chr20:33513944 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_120626 0 0 1 12 33513920 33513946 mRNA hsa-miR-302c ACSS2 miRanda miRanda
9335 chr20 33513944 33513944 1 + T C LUAD 33513941 + 33513921 33513961 41 TACAGCAGAGGTGGAGTCAGCACTTGTGGAACATGAGGCTG TACAGCAGAGGTGGAGTCAGCACCTGTGGAACATGAGGCTG < 41bp 0.507481604487088 0.725479722367093 0.26602653 0.24123502 prediction 0.435996235760008 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33513941 chr20:33513944 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_120626 0 0 1 12 33513921 33513946 mRNA hsa-miR-302d ACSS2 miRanda miRanda
9336 chr20 33513944 33513944 1 + T C LUAD 33513941 + 33513921 33513961 41 TACAGCAGAGGTGGAGTCAGCACTTGTGGAACATGAGGCTG TACAGCAGAGGTGGAGTCAGCACCTGTGGAACATGAGGCTG < 41bp 0.507481604487088 0.725479722367093 0.26602653 0.24123502 prediction 0.435996235760008 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33513941 chr20:33513944 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_120626 0 0 1 12 33513923 33513946 mRNA hsa-miR-372 ACSS2 miRanda miRanda
9337 chr20 33513944 33513944 1 + T C LUAD 33513941 + 33513921 33513961 41 TACAGCAGAGGTGGAGTCAGCACTTGTGGAACATGAGGCTG TACAGCAGAGGTGGAGTCAGCACCTGTGGAACATGAGGCTG < 41bp 0.507481604487088 0.725479722367093 0.26602653 0.24123502 prediction 0.435996235760008 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33513941 chr20:33513944 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_120626 0 0 1 12 33513920 33513946 mRNA hsa-miR-373 ACSS2 miRanda miRanda
9338 chr20 33513944 33513944 1 + T C LUAD 33513941 + 33513921 33513961 41 TACAGCAGAGGTGGAGTCAGCACTTGTGGAACATGAGGCTG TACAGCAGAGGTGGAGTCAGCACCTGTGGAACATGAGGCTG < 41bp 0.507481604487088 0.725479722367093 0.26602653 0.24123502 prediction 0.435996235760008 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33513941 chr20:33513944 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_120626 0 0 1 12 33513922 33513946 mRNA hsa-miR-520e ACSS2 miRanda miRanda
9339 chr20 33513944 33513944 1 + T C LUAD 33513941 + 33513921 33513961 41 TACAGCAGAGGTGGAGTCAGCACTTGTGGAACATGAGGCTG TACAGCAGAGGTGGAGTCAGCACCTGTGGAACATGAGGCTG < 41bp 0.507481604487088 0.725479722367093 0.26602653 0.24123502 prediction 0.435996235760008 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33513941 chr20:33513944 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_120626 0 0 1 12 33513920 33513946 mRNA hsa-miR-520a-3p ACSS2 miRanda miRanda
9340 chr20 33513944 33513944 1 + T C LUAD 33513941 + 33513921 33513961 41 TACAGCAGAGGTGGAGTCAGCACTTGTGGAACATGAGGCTG TACAGCAGAGGTGGAGTCAGCACCTGTGGAACATGAGGCTG < 41bp 0.507481604487088 0.725479722367093 0.26602653 0.24123502 prediction 0.435996235760008 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33513941 chr20:33513944 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_120626 0 0 1 12 33513926 33513946 mRNA hsa-miR-520b ACSS2 miRanda miRanda
9341 chr20 33513944 33513944 1 + T C LUAD 33513941 + 33513921 33513961 41 TACAGCAGAGGTGGAGTCAGCACTTGTGGAACATGAGGCTG TACAGCAGAGGTGGAGTCAGCACCTGTGGAACATGAGGCTG < 41bp 0.507481604487088 0.725479722367093 0.26602653 0.24123502 prediction 0.435996235760008 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33513941 chr20:33513944 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_120626 0 0 1 12 33513925 33513946 mRNA hsa-miR-520c-3p ACSS2 miRanda miRanda
9342 chr20 33513944 33513944 1 + T C LUAD 33513941 + 33513921 33513961 41 TACAGCAGAGGTGGAGTCAGCACTTGTGGAACATGAGGCTG TACAGCAGAGGTGGAGTCAGCACCTGTGGAACATGAGGCTG < 41bp 0.507481604487088 0.725479722367093 0.26602653 0.24123502 prediction 0.435996235760008 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33513941 chr20:33513944 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_120626 0 0 1 12 33513920 33513946 mRNA hsa-miR-520d-3p ACSS2 miRanda miRanda
9343 chr20 33513944 33513944 1 + T C LUAD 33513941 + 33513921 33513961 41 TACAGCAGAGGTGGAGTCAGCACTTGTGGAACATGAGGCTG TACAGCAGAGGTGGAGTCAGCACCTGTGGAACATGAGGCTG < 41bp 0.507481604487088 0.725479722367093 0.26602653 0.24123502 prediction 0.435996235760008 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33513941 chr20:33513944 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_120626 0 0 1 12 33513927 33513946 mRNA hsa-miR-302e ACSS2 miRanda miRanda
9344 chr6 26392760 26392760 1 + A G STAD 26392757 + 26392737 26392777 41 CTGGGATGGGAGAGCTTCGCCTCAGGGAAACATTACTGGGA CTGGGATGGGAGAGCTTCGCCTCGGGGAAACATTACTGGGA < 41bp 0.562732206789719 0.780484521260263 0.14412579 0.20726892 prediction 0.435504628941088 Functional Gain - BTN2A2 ENSG00000124508 CDS Human protein_coding chr6:26392757 chr6:26392760 synonymous SNV . 0 24 hm5C_associated_SNPs_120746 0 0 0 2 26392743 26392764 mRNA hsa-miR-125b BTN2A2 miRanda miRanda
9345 chr6 26392760 26392760 1 + A G STAD 26392757 + 26392737 26392777 41 CTGGGATGGGAGAGCTTCGCCTCAGGGAAACATTACTGGGA CTGGGATGGGAGAGCTTCGCCTCGGGGAAACATTACTGGGA < 41bp 0.562732206789719 0.780484521260263 0.14412579 0.20726892 prediction 0.435504628941088 Functional Gain - BTN2A2 ENSG00000124508 CDS Human protein_coding chr6:26392757 chr6:26392760 synonymous SNV . 0 24 hm5C_associated_SNPs_120746 0 0 0 2 26392741 26392764 mRNA hsa-miR-125a-5p BTN2A2 miRanda miRanda
9346 chr14 24112384 24112384 1 + C T KIRC 24112383 + 24112363 24112403 41 CCTAAGTGTGAACGTGAAGTCCCCAGCCCTGCTGCTGAGCC CCTAAGTGTGAACGTGAAGTCTCCAGCCCTGCTGCTGAGCC < 41bp 0.599018223994369 0.816761417121041 0.090589434 0.94809175 prediction 0.435486386253344 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24112383 chr14:24112384 synonymous SNV . 0 22 hm5C_associated_SNPs_120749 0 0 1 2 24112376 24112397 mRNA hsa-miR-214 DHRS2 miRanda miRanda
9347 chr14 24112384 24112384 1 + C T KIRC 24112383 + 24112363 24112403 41 CCTAAGTGTGAACGTGAAGTCCCCAGCCCTGCTGCTGAGCC CCTAAGTGTGAACGTGAAGTCTCCAGCCCTGCTGCTGAGCC < 41bp 0.599018223994369 0.816761417121041 0.090589434 0.94809175 prediction 0.435486386253344 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24112383 chr14:24112384 synonymous SNV . 0 22 hm5C_associated_SNPs_120749 0 0 1 2 24112384 24112406 mRNA hsa-miR-149 DHRS2 miRanda miRanda
9348 chr17 39847765 39847765 1 + C A rs9890480 39847761 + 39847741 39847781 41 TCATGTAGCTAGCTGTAGAGCTTGCAACTTAATAGCAGCAG TCATGTAGCTAGCTGTAGAGCTTGAAACTTAATAGCAGCAG < 41bp 0.378949597982275 0.717694275630756 0.1334011 0.11235231 prediction 0.435388551261512 Functional Gain - EIF1 ENSG00000173812 UTR3 Human protein_coding chr17:39847761 chr17:39847765 . . 0 25 hm5C_associated_SNPs_120774 0 0 1 2 39847764 39847787 mRNA hsa-miR-449a EIF1 miRanda miRanda
9349 chr17 39847765 39847765 1 + C A rs9890480 39847761 + 39847741 39847781 41 TCATGTAGCTAGCTGTAGAGCTTGCAACTTAATAGCAGCAG TCATGTAGCTAGCTGTAGAGCTTGAAACTTAATAGCAGCAG < 41bp 0.378949597982275 0.717694275630756 0.1334011 0.11235231 prediction 0.435388551261512 Functional Gain - EIF1 ENSG00000173812 UTR3 Human protein_coding chr17:39847761 chr17:39847765 . . 0 25 hm5C_associated_SNPs_120774 0 0 1 2 39847764 39847787 mRNA hsa-miR-449b EIF1 miRanda miRanda
9350 chr6 32610520 32610520 1 + C A ACC 32610519 + 32610499 32610539 41 CCTGCGTTCAGTTGGTGCTTCCAGACACCAAGGGCCATTGT CCTGCGTTCAGTTGGTGCTTCAAGACACCAAGGGCCATTGT < 41bp 0.610690248785224 0.828350308380953 0.31546244 0.31304938 prediction 0.435320119191457 Functional Gain - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32610519 chr6:32610520 synonymous SNV . 0 22 hm5C_associated_SNPs_120796 0 0 0 1 32610515 32610536 mRNA hsa-miR-328 HLA-DQA1 miRanda miRanda
9351 chr9 72521031 72521031 1 + T A ESCA 72521027 + 72521007 72521047 41 ACAGAAACTCTATCCCTTGACTAGTGGGCCTATTGTGCCAA ACAGAAACTCTATCCCTTGACTAGAGGGCCTATTGTGCCAA < 41bp 0.667555657931809 0.884983895220884 0.029241383 0.078511655 prediction 0.434856474578151 Functional Gain - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72521027 chr9:72521031 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_120907 0 0 0 5 72521023 72521048 mRNA hsa-miR-96 C9orf135 miRanda miRanda
9352 chr9 72521031 72521031 1 + T A ESCA 72521027 + 72521007 72521047 41 ACAGAAACTCTATCCCTTGACTAGTGGGCCTATTGTGCCAA ACAGAAACTCTATCCCTTGACTAGAGGGCCTATTGTGCCAA < 41bp 0.667555657931809 0.884983895220884 0.029241383 0.078511655 prediction 0.434856474578151 Functional Gain - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72521027 chr9:72521031 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_120907 0 0 0 5 72521027 72521048 mRNA hsa-miR-182 C9orf135 miRanda miRanda
9353 chr9 72521031 72521031 1 + T A ESCA 72521027 + 72521007 72521047 41 ACAGAAACTCTATCCCTTGACTAGTGGGCCTATTGTGCCAA ACAGAAACTCTATCCCTTGACTAGAGGGCCTATTGTGCCAA < 41bp 0.667555657931809 0.884983895220884 0.029241383 0.078511655 prediction 0.434856474578151 Functional Gain - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72521027 chr9:72521031 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_120907 0 0 0 5 72521028 72521048 mRNA hsa-miR-183 C9orf135 miRanda miRanda
9354 chr9 72521031 72521031 1 + T A ESCA 72521027 + 72521007 72521047 41 ACAGAAACTCTATCCCTTGACTAGTGGGCCTATTGTGCCAA ACAGAAACTCTATCCCTTGACTAGAGGGCCTATTGTGCCAA < 41bp 0.667555657931809 0.884983895220884 0.029241383 0.078511655 prediction 0.434856474578151 Functional Gain - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72521027 chr9:72521031 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_120907 0 0 0 5 72521026 72521049 mRNA hsa-miR-363 C9orf135 miRanda miRanda
9355 chr9 72521031 72521031 1 + T A ESCA 72521027 + 72521007 72521047 41 ACAGAAACTCTATCCCTTGACTAGTGGGCCTATTGTGCCAA ACAGAAACTCTATCCCTTGACTAGAGGGCCTATTGTGCCAA < 41bp 0.667555657931809 0.884983895220884 0.029241383 0.078511655 prediction 0.434856474578151 Functional Gain - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72521027 chr9:72521031 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_120907 0 0 0 5 72521027 72521048 mRNA hsa-miR-1271 C9orf135 miRanda miRanda
9356 chr17 41063082 41063082 1 + T C LUAD 41063079 + 41063059 41063099 41 GGGTGTAGACCTCCTGTGGACTCTGGAGAAAGCCCAGAGGT GGGTGTAGACCTCCTGTGGACTCCGGAGAAAGCCCAGAGGT < 41bp 0.528571003714576 0.745897875225575 0.38234213 0.3040756 prediction 0.434653743021998 Functional Gain - G6PC ENSG00000131482 CDS Human protein_coding chr17:41063079 chr17:41063082 nonsynonymous SNV 0.907 3 24 hm5C_associated_SNPs_120950 0 0 1 2 41063077 41063098 mRNA hsa-miR-330-5p G6PC miRanda miRanda
9357 chr17 41063082 41063082 1 + T C LUAD 41063079 + 41063059 41063099 41 GGGTGTAGACCTCCTGTGGACTCTGGAGAAAGCCCAGAGGT GGGTGTAGACCTCCTGTGGACTCCGGAGAAAGCCCAGAGGT < 41bp 0.528571003714576 0.745897875225575 0.38234213 0.3040756 prediction 0.434653743021998 Functional Gain - G6PC ENSG00000131482 CDS Human protein_coding chr17:41063079 chr17:41063082 nonsynonymous SNV 0.907 3 24 hm5C_associated_SNPs_120950 0 0 1 2 41063081 41063098 mRNA hsa-miR-326 G6PC miRanda miRanda
9358 chr22 19119546 19119546 1 - G A COAD 19119547 - 19119527 19119567 41 AGTCGTCATAGGGCATGGAGCCGCAGACCATGATGTACAGG AGTCGTCATAGGGCATGGAGCTGCAGACCATGATGTACAGG < 41bp 0.508072832140665 0.725390921004185 0.22765389 0.14173532 prediction 0.43463617772704 Functional Gain - TSSK2 ENSG00000206203 CDS Human protein_coding chr22:19119547 chr22:19119546 nonsynonymous SNV 0.995 5 22 hm5C_associated_SNPs_120956 0 0 0 1 19119526 19119551 mRNA hsa-miR-486-5p DGCR14 miRanda miRanda
9359 chr6 154412236 154412236 1 + C T GBM 154412235 + 154412215 154412255 41 ATCTTGCGCCTCAAGAGTGTCCGCATGCTCTCTGGCTCCAA ATCTTGCGCCTCAAGAGTGTCTGCATGCTCTCTGGCTCCAA < 41bp 0.540208357705564 0.757511202734758 0.055327922 0.8225659 prediction 0.434605690058386 Functional Gain - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154412235 chr6:154412236 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_120964 0 0 0 1 154412221 154412244 mRNA hsa-miR-503 OPRM1 miRanda miRanda
9360 chr1 900438 900438 1 + C A UCEC 900437 + 900417 900457 41 ACTCCATCGAGAAGTACAACCCGAGGACCAACAAGTGGGTG ACTCCATCGAGAAGTACAACCAGAGGACCAACAAGTGGGTG < 41bp 0.459590689407131 0.717300390484717 0.5664938 0.9151313 prediction 0.434600780969433 Functional Gain - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:900437 chr1:900438 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_120965 0 0 0 2 900427 900448 mRNA hsa-miR-133a KLHL17 miRanda miRanda
9361 chr1 900438 900438 1 + C A UCEC 900437 + 900417 900457 41 ACTCCATCGAGAAGTACAACCCGAGGACCAACAAGTGGGTG ACTCCATCGAGAAGTACAACCAGAGGACCAACAAGTGGGTG < 41bp 0.459590689407131 0.717300390484717 0.5664938 0.9151313 prediction 0.434600780969433 Functional Gain - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:900437 chr1:900438 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_120965 0 0 0 2 900427 900448 mRNA hsa-miR-133b KLHL17 miRanda miRanda
9362 chr10 4890145 4890145 1 + C T rs752534 4890144 + 4890124 4890164 41 TTCTGTGCCCTGCCAGTGACCCCCAGGTTATTCTAAAGCAG TTCTGTGCCCTGCCAGTGACCTCCAGGTTATTCTAAAGCAG < 41bp 0.48444060006341 0.717274828856105 0.048723817 0.3565254 prediction 0.434549657712209 Functional Gain - AKR1E2 ENSG00000165568 UTR3 Human protein_coding chr10:4890144 chr10:4890145 . . 0 22 hm5C_associated_SNPs_120983 0 0 0 1 4890132 4890153 mRNA hsa-miR-490-3p AKR1E2 miRanda miRanda
9363 chr3 38307523 38307523 1 + C T LUSC 38307522 + 38307502 38307542 41 GCAGTGGCTTGGGTGAAGAACCACACTTTCAACCTGAGTGC GCAGTGGCTTGGGTGAAGAACTACACTTTCAACCTGAGTGC < 41bp 0.551400017546054 0.768656283090622 0.30286413 0.45873037 prediction 0.434512531089136 Functional Gain - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38307522 chr3:38307523 nonsynonymous SNV 0.970 0 22 hm5C_associated_SNPs_120990 0 0 0 2 38307520 38307544 mRNA hsa-miR-29b SLC22A13 miRanda miRanda
9364 chr3 38307523 38307523 1 + C T LUSC 38307522 + 38307502 38307542 41 GCAGTGGCTTGGGTGAAGAACCACACTTTCAACCTGAGTGC GCAGTGGCTTGGGTGAAGAACTACACTTTCAACCTGAGTGC < 41bp 0.551400017546054 0.768656283090622 0.30286413 0.45873037 prediction 0.434512531089136 Functional Gain - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38307522 chr3:38307523 nonsynonymous SNV 0.970 0 22 hm5C_associated_SNPs_120990 0 0 0 2 38307521 38307544 mRNA hsa-miR-29c SLC22A13 miRanda miRanda
9365 chr21 47711671 47711671 1 + A G rs16979054 47711668 + 47711648 47711688 41 GTTGAGCTAACACAGACCTGCTGAATCAGCTTCTTTCTGAG GTTGAGCTAACACAGACCTGCTGGATCAGCTTCTTTCTGAG < 41bp 0.547461014337669 0.764716296679216 0.12967208 0.32821834 prediction 0.434510564683096 Functional Gain - YBEY ENSG00000182362 intronic Human protein_coding chr21:47711668 chr21:47711671 . . 0 24 hm5C_associated_SNPs_120992 0 0 0 1 47711650 47711671 mRNA hsa-miR-214 C21orf57 miRanda miRanda
9366 chr1 100758155 100758155 1 + T A rs11581889 100758151 + 100758131 100758171 41 ACAGGCATGAGCCACCACAGCTGGTCGTAAATATTTTTTGA ACAGGCATGAGCCACCACAGCTGGACGTAAATATTTTTTGA < 41bp 0.627945153863134 0.844788208933332 0.3035981 0.39936167 prediction 0.433686110140396 Functional Gain - RTCA ENSG00000137996 UTR3 Human protein_coding chr1:100758151 chr1:100758155 . . 0 25 hm5C_associated_SNPs_121213 0 0 1 1 100758146 100758166 mRNA hsa-miR-590-3p RTCD1 miRanda miRanda
9367 chr12 5604420 5604420 1 + T G rs71532854 5604417 + 5604397 5604437 41 GTACACCAGTATTTTGCATTCAGTATTGTCAAGGCCATGAC GTACACCAGTATTTTGCATTCAGGATTGTCAAGGCCATGAC < 41bp 0.660095492603407 0.876930968067276 0.06457308 0.8400278 prediction 0.433670950927738 Functional Gain - NTF3 ENSG00000185652 UTR3 Human protein_coding chr12:5604417 chr12:5604420 . . 0 24 hm5C_associated_SNPs_121220 0 0 0 2 5604402 5604424 mRNA hsa-miR-200b NTF3 miRanda miRanda
9368 chr12 5604420 5604420 1 + T G rs71532854 5604417 + 5604397 5604437 41 GTACACCAGTATTTTGCATTCAGTATTGTCAAGGCCATGAC GTACACCAGTATTTTGCATTCAGGATTGTCAAGGCCATGAC < 41bp 0.660095492603407 0.876930968067276 0.06457308 0.8400278 prediction 0.433670950927738 Functional Gain - NTF3 ENSG00000185652 UTR3 Human protein_coding chr12:5604417 chr12:5604420 . . 0 24 hm5C_associated_SNPs_121220 0 0 0 2 5604404 5604424 mRNA hsa-miR-429 NTF3 miRanda miRanda
9369 chr22 32257418 32257418 1 + A G COAD 32257415 + 32257395 32257435 41 AGCATCGTCCGCCTTCTACCCTCAGGTTAGTCCAACTCCAG AGCATCGTCCGCCTTCTACCCTCGGGTTAGTCCAACTCCAG < 41bp 0.528192460543426 0.744949549463187 0.15055886 0.5243864 prediction 0.433514177839522 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32257415 chr22:32257418 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_121250 0 0 1 4 32257397 32257418 mRNA hsa-let-7c DEPDC5 miRanda miRanda
9370 chr22 32257418 32257418 1 + A G COAD 32257415 + 32257395 32257435 41 AGCATCGTCCGCCTTCTACCCTCAGGTTAGTCCAACTCCAG AGCATCGTCCGCCTTCTACCCTCGGGTTAGTCCAACTCCAG < 41bp 0.528192460543426 0.744949549463187 0.15055886 0.5243864 prediction 0.433514177839522 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32257415 chr22:32257418 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_121250 0 0 1 4 32257396 32257418 mRNA hsa-let-7e DEPDC5 miRanda miRanda
9371 chr22 32257418 32257418 1 + A G COAD 32257415 + 32257395 32257435 41 AGCATCGTCCGCCTTCTACCCTCAGGTTAGTCCAACTCCAG AGCATCGTCCGCCTTCTACCCTCGGGTTAGTCCAACTCCAG < 41bp 0.528192460543426 0.744949549463187 0.15055886 0.5243864 prediction 0.433514177839522 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32257415 chr22:32257418 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_121250 0 0 1 4 32257414 32257419 mRNA hsa-miR-133a DEPDC5 miRanda miRanda
9372 chr22 32257418 32257418 1 + A G COAD 32257415 + 32257395 32257435 41 AGCATCGTCCGCCTTCTACCCTCAGGTTAGTCCAACTCCAG AGCATCGTCCGCCTTCTACCCTCGGGTTAGTCCAACTCCAG < 41bp 0.528192460543426 0.744949549463187 0.15055886 0.5243864 prediction 0.433514177839522 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32257415 chr22:32257418 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_121250 0 0 1 4 32257414 32257419 mRNA hsa-miR-133b DEPDC5 miRanda miRanda
9373 chr8 145584694 145584694 1 + C T rs34383175 145584693 + 145584673 145584713 41 TGAGCCTGGGCAGGTGGGGACCCCGCTCCCCAACACCTGTC TGAGCCTGGGCAGGTGGGGACTCCGCTCCCCAACACCTGTC < 41bp 0.513758515759842 0.730180208116051 0.3872046 0.6873374 prediction 0.432843384712419 Functional Gain - SLC52A2 ENSG00000185803 UTR3 Human protein_coding chr8:145584693 chr8:145584694 . . 0 22 hm5C_associated_SNPs_121396 1 1 1 1 145584689 145584711 mRNA hsa-miR-296-3p GPR172A miRanda miRanda
9374 chr12 42839842 42839842 1 + C T rs186308218 42839841 + 42839821 42839861 41 GGCTAGGACCCAACCAAGTACCAGAAATGAAGGAAACGACC GGCTAGGACCCAACCAAGTACTAGAAATGAAGGAAACGACC < 41bp 0.514349983743193 0.730625331374294 0.17937672 0.8969629 prediction 0.432550695262202 Functional Gain - PPHLN1 ENSG00000134283 CDS Human protein_coding chr12:42839841 chr12:42839842 nonsynonymous SNV 0.058 1 22 hm5C_associated_SNPs_121471 0 0 1 1 42839833 42839854 mRNA hsa-miR-205 PPHLN1 miRanda miRanda
9375 chr21 45937658 45937658 1 + C T rs146120102 45937657 + 45937637 45937677 41 AACACTGAGCCCTCCTACCTCCTGATATCCAGGGCTGCCGA AACACTGAGCCCTCCTACCTCTTGATATCCAGGGCTGCCGA < 41bp 0.517328460015126 0.733554617485098 0.08760533 0.24188608 prediction 0.432452314939944 Functional Gain - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937657 chr21:45937658 . . 0 22 hm5C_associated_SNPs_121492 0 0 1 9 45937637 45937658 mRNA hsa-let-7a C21orf90 miRanda miRanda
9376 chr21 45937658 45937658 1 + C T rs146120102 45937657 + 45937637 45937677 41 AACACTGAGCCCTCCTACCTCCTGATATCCAGGGCTGCCGA AACACTGAGCCCTCCTACCTCTTGATATCCAGGGCTGCCGA < 41bp 0.517328460015126 0.733554617485098 0.08760533 0.24188608 prediction 0.432452314939944 Functional Gain - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937657 chr21:45937658 . . 0 22 hm5C_associated_SNPs_121492 0 0 1 9 45937636 45937658 mRNA hsa-let-7b C21orf90 miRanda miRanda
9377 chr21 45937658 45937658 1 + C T rs146120102 45937657 + 45937637 45937677 41 AACACTGAGCCCTCCTACCTCCTGATATCCAGGGCTGCCGA AACACTGAGCCCTCCTACCTCTTGATATCCAGGGCTGCCGA < 41bp 0.517328460015126 0.733554617485098 0.08760533 0.24188608 prediction 0.432452314939944 Functional Gain - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937657 chr21:45937658 . . 0 22 hm5C_associated_SNPs_121492 0 0 1 9 45937636 45937658 mRNA hsa-let-7c C21orf90 miRanda miRanda
9378 chr21 45937658 45937658 1 + C T rs146120102 45937657 + 45937637 45937677 41 AACACTGAGCCCTCCTACCTCCTGATATCCAGGGCTGCCGA AACACTGAGCCCTCCTACCTCTTGATATCCAGGGCTGCCGA < 41bp 0.517328460015126 0.733554617485098 0.08760533 0.24188608 prediction 0.432452314939944 Functional Gain - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937657 chr21:45937658 . . 0 22 hm5C_associated_SNPs_121492 0 0 1 9 45937637 45937658 mRNA hsa-let-7d C21orf90 miRanda miRanda
9379 chr21 45937658 45937658 1 + C T rs146120102 45937657 + 45937637 45937677 41 AACACTGAGCCCTCCTACCTCCTGATATCCAGGGCTGCCGA AACACTGAGCCCTCCTACCTCTTGATATCCAGGGCTGCCGA < 41bp 0.517328460015126 0.733554617485098 0.08760533 0.24188608 prediction 0.432452314939944 Functional Gain - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937657 chr21:45937658 . . 0 22 hm5C_associated_SNPs_121492 0 0 1 9 45937637 45937658 mRNA hsa-let-7e C21orf90 miRanda miRanda
9380 chr21 45937658 45937658 1 + C T rs146120102 45937657 + 45937637 45937677 41 AACACTGAGCCCTCCTACCTCCTGATATCCAGGGCTGCCGA AACACTGAGCCCTCCTACCTCTTGATATCCAGGGCTGCCGA < 41bp 0.517328460015126 0.733554617485098 0.08760533 0.24188608 prediction 0.432452314939944 Functional Gain - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937657 chr21:45937658 . . 0 22 hm5C_associated_SNPs_121492 0 0 1 9 45937637 45937658 mRNA hsa-let-7f C21orf90 miRanda miRanda
9381 chr21 45937658 45937658 1 + C T rs146120102 45937657 + 45937637 45937677 41 AACACTGAGCCCTCCTACCTCCTGATATCCAGGGCTGCCGA AACACTGAGCCCTCCTACCTCTTGATATCCAGGGCTGCCGA < 41bp 0.517328460015126 0.733554617485098 0.08760533 0.24188608 prediction 0.432452314939944 Functional Gain - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937657 chr21:45937658 . . 0 22 hm5C_associated_SNPs_121492 0 0 1 9 45937637 45937658 mRNA hsa-miR-98 C21orf90 miRanda miRanda
9382 chr21 45937658 45937658 1 + C T rs146120102 45937657 + 45937637 45937677 41 AACACTGAGCCCTCCTACCTCCTGATATCCAGGGCTGCCGA AACACTGAGCCCTCCTACCTCTTGATATCCAGGGCTGCCGA < 41bp 0.517328460015126 0.733554617485098 0.08760533 0.24188608 prediction 0.432452314939944 Functional Gain - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937657 chr21:45937658 . . 0 22 hm5C_associated_SNPs_121492 0 0 1 9 45937639 45937658 mRNA hsa-let-7g C21orf90 miRanda miRanda
9383 chr21 45937658 45937658 1 + C T rs146120102 45937657 + 45937637 45937677 41 AACACTGAGCCCTCCTACCTCCTGATATCCAGGGCTGCCGA AACACTGAGCCCTCCTACCTCTTGATATCCAGGGCTGCCGA < 41bp 0.517328460015126 0.733554617485098 0.08760533 0.24188608 prediction 0.432452314939944 Functional Gain - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937657 chr21:45937658 . . 0 22 hm5C_associated_SNPs_121492 0 0 1 9 45937632 45937658 mRNA hsa-let-7i C21orf90 miRanda miRanda
9384 chr21 34635349 34635349 1 + C T rs117810077 34635348 + 34635328 34635368 41 CCAGTTGATAGACCCGGAGTCCGAGGAGGAGCCTGACCTGC CCAGTTGATAGACCCGGAGTCTGAGGAGGAGCCTGACCTGC < 41bp 0.515935839938042 0.732124647642071 0.845629 0.8749522 prediction 0.432377615408059 Functional Gain - IFNAR2 ENSG00000159110 CDS Human protein_coding chr21:34635348 chr21:34635349 synonymous SNV . 0 22 hm5C_associated_SNPs_121514 0 0 0 1 34635325 34635351 mRNA hsa-miR-127-3p IFNAR2 miRanda miRanda
9385 chr3 44400661 44400661 1 + T C rs74897395 44400659 + 44400639 44400679 41 AGGCTGAGGCAGGAGGATTACTTGAGCCCAGGAATTCAAGC AGGCTGAGGCAGGAGGATTACTCGAGCCCAGGAATTCAAGC < 41bp 0.615562799381499 0.831693301899391 0.8708322 0.8863778 prediction 0.432261005035785 Functional Gain - TCAIM ENSG00000179152 UTR3 Human protein_coding chr3:44400659 chr3:44400661 . . 0 23 hm5C_associated_SNPs_121549 0 0 0 3 44400643 44400664 mRNA hsa-miR-26a C3orf23 miRanda miRanda
9386 chr3 44400661 44400661 1 + T C rs74897395 44400659 + 44400639 44400679 41 AGGCTGAGGCAGGAGGATTACTTGAGCCCAGGAATTCAAGC AGGCTGAGGCAGGAGGATTACTCGAGCCCAGGAATTCAAGC < 41bp 0.615562799381499 0.831693301899391 0.8708322 0.8863778 prediction 0.432261005035785 Functional Gain - TCAIM ENSG00000179152 UTR3 Human protein_coding chr3:44400659 chr3:44400661 . . 0 23 hm5C_associated_SNPs_121549 0 0 0 3 44400644 44400664 mRNA hsa-miR-26b C3orf23 miRanda miRanda
9387 chr3 44400661 44400661 1 + T C rs74897395 44400659 + 44400639 44400679 41 AGGCTGAGGCAGGAGGATTACTTGAGCCCAGGAATTCAAGC AGGCTGAGGCAGGAGGATTACTCGAGCCCAGGAATTCAAGC < 41bp 0.615562799381499 0.831693301899391 0.8708322 0.8863778 prediction 0.432261005035785 Functional Gain - TCAIM ENSG00000179152 UTR3 Human protein_coding chr3:44400659 chr3:44400661 . . 0 23 hm5C_associated_SNPs_121549 0 0 0 3 44400648 44400664 mRNA hsa-miR-1297 C3orf23 miRanda miRanda
9388 chr8 10387101 10387101 1 + C T GBM 10387100 + 10387080 10387120 41 AGGCGGAGGTGGGTGAGTTTCCGTGGCAGGTGAGTATTCAG AGGCGGAGGTGGGTGAGTTTCTGTGGCAGGTGAGTATTCAG < 41bp 0.542508685927497 0.758614213438561 0.8670188 0.55982554 prediction 0.432211055022128 Functional Gain - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10387100 chr8:10387101 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_121563 0 0 0 2 10387096 10387118 mRNA hsa-miR-216a PRSS55 miRanda miRanda
9389 chr8 10387101 10387101 1 + C T GBM 10387100 + 10387080 10387120 41 AGGCGGAGGTGGGTGAGTTTCCGTGGCAGGTGAGTATTCAG AGGCGGAGGTGGGTGAGTTTCTGTGGCAGGTGAGTATTCAG < 41bp 0.542508685927497 0.758614213438561 0.8670188 0.55982554 prediction 0.432211055022128 Functional Gain - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10387100 chr8:10387101 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_121563 0 0 0 2 10387099 10387122 mRNA hsa-miR-486-5p PRSS55 miRanda miRanda
9390 chr15 99791740 99791740 1 + C A rs565921036 99791736 + 99791716 99791756 41 GCTCCGGAGCGCTGGCTCTGCTGGCGCTGAGGTGAGTAGAG GCTCCGGAGCGCTGGCTCTGCTGGAGCTGAGGTGAGTAGAG < 41bp 0.676618587177445 0.892686262646966 0.4561431 0.34385106 prediction 0.432135350939042 Functional Gain - LRRC28 ENSG00000168904 UTR5 Human protein_coding chr15:99791736 chr15:99791740 . . 0 25 hm5C_associated_SNPs_121581 0 0 1 2 99791739 99791746 mRNA hsa-miR-133a LRRC28 miRanda miRanda
9391 chr15 99791740 99791740 1 + C A rs565921036 99791736 + 99791716 99791756 41 GCTCCGGAGCGCTGGCTCTGCTGGCGCTGAGGTGAGTAGAG GCTCCGGAGCGCTGGCTCTGCTGGAGCTGAGGTGAGTAGAG < 41bp 0.676618587177445 0.892686262646966 0.4561431 0.34385106 prediction 0.432135350939042 Functional Gain - LRRC28 ENSG00000168904 UTR5 Human protein_coding chr15:99791736 chr15:99791740 . . 0 25 hm5C_associated_SNPs_121581 0 0 1 2 99791739 99791746 mRNA hsa-miR-133b LRRC28 miRanda miRanda
9392 chr15 64446601 64446601 1 + T C UCEC 64446599 + 64446579 64446619 41 CCCACAGAGTCGCTGCCCAACGTGGTGGTGAATGGTGTGCT CCCACAGAGTCGCTGCCCAACGCGGTGGTGAATGGTGTGCT < 41bp 0.592567098879873 0.808628305250974 0.30643013 0.20351675 prediction 0.432122412742201 Functional Gain - SNX22 ENSG00000157734 CDS Human protein_coding chr15:64446599 chr15:64446601 nonsynonymous SNV 0.715 0 23 hm5C_associated_SNPs_121585 0 0 0 2 64446589 64446610 mRNA hsa-miR-197 SNX22 miRanda miRanda
9393 chr15 64446601 64446601 1 + T C UCEC 64446599 + 64446579 64446619 41 CCCACAGAGTCGCTGCCCAACGTGGTGGTGAATGGTGTGCT CCCACAGAGTCGCTGCCCAACGCGGTGGTGAATGGTGTGCT < 41bp 0.592567098879873 0.808628305250974 0.30643013 0.20351675 prediction 0.432122412742201 Functional Gain - SNX22 ENSG00000157734 CDS Human protein_coding chr15:64446599 chr15:64446601 nonsynonymous SNV 0.715 0 23 hm5C_associated_SNPs_121585 0 0 0 2 64446600 64446626 mRNA hsa-miR-125a-5p SNX22 miRanda miRanda
9394 chr2 85769043 85769043 1 + A G TGCT 85769040 + 85769020 85769060 41 CAAGCTAAATGCCAAACTGGCAGAACTACGCCGTAATGGCA CAAGCTAAATGCCAAACTGGCAGGACTACGCCGTAATGGCA < 41bp 0.477093890458306 0.716054302339484 0.64916164 0.9257817 prediction 0.432108604678969 Functional Gain - MAT2A ENSG00000168906 CDS Human protein_coding chr2:85769040 chr2:85769043 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_121591 0 0 1 6 85769041 85769065 mRNA hsa-miR-17 MAT2A miRanda miRanda
9395 chr2 85769043 85769043 1 + A G TGCT 85769040 + 85769020 85769060 41 CAAGCTAAATGCCAAACTGGCAGAACTACGCCGTAATGGCA CAAGCTAAATGCCAAACTGGCAGGACTACGCCGTAATGGCA < 41bp 0.477093890458306 0.716054302339484 0.64916164 0.9257817 prediction 0.432108604678969 Functional Gain - MAT2A ENSG00000168906 CDS Human protein_coding chr2:85769040 chr2:85769043 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_121591 0 0 1 6 85769041 85769065 mRNA hsa-miR-20a MAT2A miRanda miRanda
9396 chr2 85769043 85769043 1 + A G TGCT 85769040 + 85769020 85769060 41 CAAGCTAAATGCCAAACTGGCAGAACTACGCCGTAATGGCA CAAGCTAAATGCCAAACTGGCAGGACTACGCCGTAATGGCA < 41bp 0.477093890458306 0.716054302339484 0.64916164 0.9257817 prediction 0.432108604678969 Functional Gain - MAT2A ENSG00000168906 CDS Human protein_coding chr2:85769040 chr2:85769043 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_121591 0 0 1 6 85769041 85769065 mRNA hsa-miR-93 MAT2A miRanda miRanda
9397 chr2 85769043 85769043 1 + A G TGCT 85769040 + 85769020 85769060 41 CAAGCTAAATGCCAAACTGGCAGAACTACGCCGTAATGGCA CAAGCTAAATGCCAAACTGGCAGGACTACGCCGTAATGGCA < 41bp 0.477093890458306 0.716054302339484 0.64916164 0.9257817 prediction 0.432108604678969 Functional Gain - MAT2A ENSG00000168906 CDS Human protein_coding chr2:85769040 chr2:85769043 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_121591 0 0 1 6 85769041 85769065 mRNA hsa-miR-106a MAT2A miRanda miRanda
9398 chr2 85769043 85769043 1 + A G TGCT 85769040 + 85769020 85769060 41 CAAGCTAAATGCCAAACTGGCAGAACTACGCCGTAATGGCA CAAGCTAAATGCCAAACTGGCAGGACTACGCCGTAATGGCA < 41bp 0.477093890458306 0.716054302339484 0.64916164 0.9257817 prediction 0.432108604678969 Functional Gain - MAT2A ENSG00000168906 CDS Human protein_coding chr2:85769040 chr2:85769043 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_121591 0 0 1 6 85769043 85769065 mRNA hsa-miR-106b MAT2A miRanda miRanda
9399 chr2 85769043 85769043 1 + A G TGCT 85769040 + 85769020 85769060 41 CAAGCTAAATGCCAAACTGGCAGAACTACGCCGTAATGGCA CAAGCTAAATGCCAAACTGGCAGGACTACGCCGTAATGGCA < 41bp 0.477093890458306 0.716054302339484 0.64916164 0.9257817 prediction 0.432108604678969 Functional Gain - MAT2A ENSG00000168906 CDS Human protein_coding chr2:85769040 chr2:85769043 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_121591 0 0 1 6 85769041 85769065 mRNA hsa-miR-20b MAT2A miRanda miRanda
9400 chr11 86017450 86017450 1 + C A UCEC 86017449 + 86017429 86017469 41 ATCCTGATTCAAATGGAATGCCAGTATGGCAACTCCTAGGA ATCCTGATTCAAATGGAATGCAAGTATGGCAACTCCTAGGA < 41bp 0.464382643392337 0.716046398668442 0.14548028 0.13133189 prediction 0.432092797336884 Functional Gain - HIKESHI ENSG00000149196 CDS Human protein_coding chr11:86017449 chr11:86017450 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_121594 0 0 1 2 86017433 86017454 mRNA hsa-miR-193a-3p C11orf73 miRanda miRanda
9401 chr11 86017450 86017450 1 + C A UCEC 86017449 + 86017429 86017469 41 ATCCTGATTCAAATGGAATGCCAGTATGGCAACTCCTAGGA ATCCTGATTCAAATGGAATGCAAGTATGGCAACTCCTAGGA < 41bp 0.464382643392337 0.716046398668442 0.14548028 0.13133189 prediction 0.432092797336884 Functional Gain - HIKESHI ENSG00000149196 CDS Human protein_coding chr11:86017449 chr11:86017450 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_121594 0 0 1 2 86017433 86017454 mRNA hsa-miR-193b C11orf73 miRanda miRanda
9402 chr15 66840912 66840912 1 + C T COAD 66840911 + 66840891 66840931 41 GACAGTGGGTACCACGATCTCCGTAACCATTTGCATGTGAC GACAGTGGGTACCACGATCTCTGTAACCATTTGCATGTGAC < 41bp 0.580187181653107 0.796124107652901 0.27234417 0.15804857 prediction 0.431873851999588 Functional Gain - LCTL ENSG00000188501 CDS Human protein_coding chr15:66840911 chr15:66840912 synonymous SNV . 0 22 hm5C_associated_SNPs_121658 0 0 1 2 66840903 66840926 mRNA hsa-miR-203 ZWILCH miRanda miRanda
9403 chr15 66840912 66840912 1 + C T COAD 66840911 + 66840891 66840931 41 GACAGTGGGTACCACGATCTCCGTAACCATTTGCATGTGAC GACAGTGGGTACCACGATCTCTGTAACCATTTGCATGTGAC < 41bp 0.580187181653107 0.796124107652901 0.27234417 0.15804857 prediction 0.431873851999588 Functional Gain - LCTL ENSG00000188501 CDS Human protein_coding chr15:66840911 chr15:66840912 synonymous SNV . 0 22 hm5C_associated_SNPs_121658 0 0 1 2 66840910 66840934 mRNA hsa-miR-224 ZWILCH miRanda miRanda
9404 chr8 40012684 40012684 1 + C G rs28672910 40012680 + 40012660 40012700 41 ATGTGTACATCTATTTTTCCCAAGCAATATGTTTTGGGTTT ATGTGTACATCTATTTTTCCCAAGGAATATGTTTTGGGTTT < 41bp 0.50159903639264 0.717526796756272 0.095140874 0.3327225 prediction 0.431855520727263 Functional Gain - C8orf4 ENSG00000176907 UTR3 Human protein_coding chr8:40012680 chr8:40012684 . . 0 25 hm5C_associated_SNPs_121664 0 0 0 1 40012664 40012689 mRNA hsa-miR-137 C8orf4 miRanda miRanda
9405 chr22 42180400 42180400 1 + A G rs12484839 42180397 + 42180377 42180417 41 TATTGAAGGCTCTCAGCTTTCCAAAGAAAAAGGCTGCACTA TATTGAAGGCTCTCAGCTTTCCAGAGAAAAAGGCTGCACTA < 41bp 0.534793893738919 0.750693828216228 0.4364824 0.90334034 prediction 0.431799868954617 Functional Gain - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42180397 chr22:42180400 nonsynonymous SNV 0.962 2 24 hm5C_associated_SNPs_121682 0 0 0 1 42180381 42180403 mRNA hsa-miR-9 MEI1 miRanda miRanda
9406 chr5 134229293 134229293 1 + C T GBM 134229292 + 134229272 134229312 41 CCTCACTTTAACTCTCTGCCCCGGGCATTTCCAGCTCTTCA CCTCACTTTAACTCTCTGCCCTGGGCATTTCCAGCTCTTCA < 41bp 0.579372027515381 0.79509336914434 0.02679646 0.0028237104 prediction 0.431442683257917 Functional Gain - TXNDC15 ENSG00000113621 CDS Human protein_coding chr5:134229292 chr5:134229293 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_121766 0 0 1 1 134229280 134229301 mRNA hsa-miR-365 TXNDC15 miRanda miRanda
9407 chr10 115343915 115343915 1 + A G UCEC 115343912 + 115343892 115343932 41 TCTCTCTCCACCTAGCATTGCTCAAGTTAAAGCCAGTGGAT TCTCTCTCCACCTAGCATTGCTCGAGTTAAAGCCAGTGGAT < 41bp 0.473281717446701 0.715680734416341 0.14309716 0.35086733 prediction 0.431361468832682 Functional Gain - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115343912 chr10:115343915 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_121792 0 0 0 1 115343907 115343917 mRNA hsa-miR-182 HABP2 miRanda miRanda
9408 chr7 107545882 107545882 1 + A G UCEC 107545879 + 107545859 107545899 41 TACGAAAGCTGATGGCGGCACTCAGGTTATTGATACAAAGA TACGAAAGCTGATGGCGGCACTCGGGTTATTGATACAAAGA < 41bp 0.484008209615996 0.715599206086106 0.0620113 0.14561644 prediction 0.431198412172211 Functional Gain - DLD ENSG00000091140 CDS Human protein_coding chr7:107545879 chr7:107545882 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_121840 0 0 1 1 107545874 107545894 mRNA hsa-miR-374a DLD miRanda miRanda
9409 chr17 42225860 42225860 1 + T C COAD 42225857 + 42225837 42225877 41 CATGTCCGCCCAGGATGAGTCTCTAGATCCTGTCATCCAAT CATGTCCGCCCAGGATGAGTCTCCAGATCCTGTCATCCAAT < 41bp 0.527218620783138 0.742654698584346 0.5782212 0.957421 prediction 0.430872155602415 Functional Gain - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42225857 chr17:42225860 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_121908 0 0 1 1 42225844 42225866 mRNA hsa-miR-383 C17orf53 miRanda miRanda
9410 chr1 111032136 111032136 1 + T A rs815327 111032132 + 111032112 111032152 41 CACCTCCCTGCTGGTGGGGCCTGGTGGCAACATCCTCAACA CACCTCCCTGCTGGTGGGGCCTGGAGGCAACATCCTCAACA < 41bp 0.64265791168644 0.858028813727882 0.24867946 0.21893716 prediction 0.430741804082883 Functional Gain - CYMP;CYMP-AS1 ENSG00000235407;ENSG00000240194 ncRNA_exonic Human other chr1:111032132 chr1:111032136 . . 0 25 hm5C_associated_SNPs_121933 0 0 0 1 111032136 111032159 mRNA hsa-miR-138 CYMP miRanda miRanda
9411 chr3 122864396 122864396 1 + C T LIHC 122864395 + 122864375 122864415 41 GCCACTGTAAGAAAATGAAGCCGGAGTTTGAGAAGGCAGCA GCCACTGTAAGAAAATGAAGCTGGAGTTTGAGAAGGCAGCA < 41bp 0.585099113907412 0.800460411648737 0.8192046 0.4999164 prediction 0.430722595482649 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122864395 chr3:122864396 nonsynonymous SNV 0.898 4 22 hm5C_associated_SNPs_121938 0 0 1 1 122864388 122864407 mRNA hsa-miR-371-5p PDIA5 miRanda miRanda
9412 chr12 56555179 56555179 1 + C T UCEC 56555178 + 56555158 56555198 41 TTCCTTTCCACAGAGCTCGTCCGCATGGTGCTGAATGGCTG TTCCTTTCCACAGAGCTCGTCTGCATGGTGCTGAATGGCTG < 41bp 0.474796351580124 0.715228034213584 0.06407717 0.21411976 prediction 0.430456068427169 Functional Gain - MYL6 ENSG00000092841 CDS Human protein_coding chr12:56555178 chr12:56555179 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_122004 0 0 1 6 56555169 56555190 mRNA hsa-miR-29a MYL6 miRanda miRanda
9413 chr12 56555179 56555179 1 + C T UCEC 56555178 + 56555158 56555198 41 TTCCTTTCCACAGAGCTCGTCCGCATGGTGCTGAATGGCTG TTCCTTTCCACAGAGCTCGTCTGCATGGTGCTGAATGGCTG < 41bp 0.474796351580124 0.715228034213584 0.06407717 0.21411976 prediction 0.430456068427169 Functional Gain - MYL6 ENSG00000092841 CDS Human protein_coding chr12:56555178 chr12:56555179 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_122004 0 0 1 6 56555171 56555190 mRNA hsa-miR-29a MYL6 miRanda miRanda
9414 chr12 56555179 56555179 1 + C T UCEC 56555178 + 56555158 56555198 41 TTCCTTTCCACAGAGCTCGTCCGCATGGTGCTGAATGGCTG TTCCTTTCCACAGAGCTCGTCTGCATGGTGCTGAATGGCTG < 41bp 0.474796351580124 0.715228034213584 0.06407717 0.21411976 prediction 0.430456068427169 Functional Gain - MYL6 ENSG00000092841 CDS Human protein_coding chr12:56555178 chr12:56555179 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_122004 0 0 1 6 56555164 56555190 mRNA hsa-miR-29b MYL6 miRanda miRanda
9415 chr12 56555179 56555179 1 + C T UCEC 56555178 + 56555158 56555198 41 TTCCTTTCCACAGAGCTCGTCCGCATGGTGCTGAATGGCTG TTCCTTTCCACAGAGCTCGTCTGCATGGTGCTGAATGGCTG < 41bp 0.474796351580124 0.715228034213584 0.06407717 0.21411976 prediction 0.430456068427169 Functional Gain - MYL6 ENSG00000092841 CDS Human protein_coding chr12:56555178 chr12:56555179 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_122004 0 0 1 6 56555171 56555190 mRNA hsa-miR-29b MYL6 miRanda miRanda
9416 chr12 56555179 56555179 1 + C T UCEC 56555178 + 56555158 56555198 41 TTCCTTTCCACAGAGCTCGTCCGCATGGTGCTGAATGGCTG TTCCTTTCCACAGAGCTCGTCTGCATGGTGCTGAATGGCTG < 41bp 0.474796351580124 0.715228034213584 0.06407717 0.21411976 prediction 0.430456068427169 Functional Gain - MYL6 ENSG00000092841 CDS Human protein_coding chr12:56555178 chr12:56555179 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_122004 0 0 1 6 56555169 56555190 mRNA hsa-miR-29c MYL6 miRanda miRanda
9417 chr12 56555179 56555179 1 + C T UCEC 56555178 + 56555158 56555198 41 TTCCTTTCCACAGAGCTCGTCCGCATGGTGCTGAATGGCTG TTCCTTTCCACAGAGCTCGTCTGCATGGTGCTGAATGGCTG < 41bp 0.474796351580124 0.715228034213584 0.06407717 0.21411976 prediction 0.430456068427169 Functional Gain - MYL6 ENSG00000092841 CDS Human protein_coding chr12:56555178 chr12:56555179 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_122004 0 0 1 6 56555171 56555190 mRNA hsa-miR-29c MYL6 miRanda miRanda
9418 chr17 42225541 42225541 1 + A G LIHC 42225538 + 42225518 42225558 41 GAGTGACAGTGACAGAAGTGCTCAGAGAGACAGCAAGACCT GAGTGACAGTGACAGAAGTGCTCGGAGAGACAGCAAGACCT < 41bp 0.466539436820834 0.715177852985985 0.20459688 0.18419811 prediction 0.430355705971971 Functional Gain - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42225538 chr17:42225541 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_122030 0 0 0 1 42225538 42225557 mRNA hsa-miR-431 C17orf53 miRanda miRanda
9419 chr7 156469227 156469227 1 + T A LUAD 156469223 + 156469203 156469243 41 AGAGAGATGGCCCTCCTGTCCTGCTCACATGTGTTCCACCA AGAGAGATGGCCCTCCTGTCCTGCACACATGTGTTCCACCA < 41bp 0.675654166005436 0.890824817805957 0.08608326 0.15700385 prediction 0.430341303601042 Functional Gain - RNF32 ENSG00000105982 CDS Human protein_coding chr7:156469223 chr7:156469227 nonsynonymous SNV 0.968 1 25 hm5C_associated_SNPs_122035 0 0 0 1 156469215 156469236 mRNA hsa-miR-128 RNF32 miRanda miRanda
9420 chr7 154735774 154735774 1 - T C rs144323105 154735777 - 154735757 154735797 41 AGGAGCTGCTGCGCTTCCTTCACATGCTCTTGTTTTCCAGC AGGAGCTGCTGCGCTTCCTTCACGTGCTCTTGTTTTCCAGC < 41bp 0.597914438868736 0.81296598334511 0.18291906 0.39833504 prediction 0.430103088952749 Functional Gain - PAXIP1-AS2 ENSG00000214106 CDS Human antisense chr7:154735777 chr7:154735774 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_122088 0 0 1 1 154735765 154735789 mRNA hsa-miR-335 PAXIP1 miRanda miRanda
9421 chr2 224832180 224832180 1 + C A rs150253706 224832176 + 224832156 224832196 41 GCTAGGCTAGTCTTGAACTCCTGACCTCAGGTGATCCACCC GCTAGGCTAGTCTTGAACTCCTGAACTCAGGTGATCCACCC < 41bp 0.706846809978703 0.921876838207745 0.26691413 0.4934013 prediction 0.430060056458085 Functional Gain - MRPL44 ENSG00000228802 ncRNA_intronic Human antisense chr2:224832176 chr2:224832180 . . 0 25 hm5C_associated_SNPs_122101 0 0 0 3 224832162 224832184 mRNA hsa-let-7e MRPL44 miRanda miRanda
9422 chr2 224832180 224832180 1 + C A rs150253706 224832176 + 224832156 224832196 41 GCTAGGCTAGTCTTGAACTCCTGACCTCAGGTGATCCACCC GCTAGGCTAGTCTTGAACTCCTGAACTCAGGTGATCCACCC < 41bp 0.706846809978703 0.921876838207745 0.26691413 0.4934013 prediction 0.430060056458085 Functional Gain - MRPL44 ENSG00000228802 ncRNA_intronic Human antisense chr2:224832176 chr2:224832180 . . 0 25 hm5C_associated_SNPs_122101 0 0 0 3 224832162 224832184 mRNA hsa-let-7g MRPL44 miRanda miRanda
9423 chr2 224832180 224832180 1 + C A rs150253706 224832176 + 224832156 224832196 41 GCTAGGCTAGTCTTGAACTCCTGACCTCAGGTGATCCACCC GCTAGGCTAGTCTTGAACTCCTGAACTCAGGTGATCCACCC < 41bp 0.706846809978703 0.921876838207745 0.26691413 0.4934013 prediction 0.430060056458085 Functional Gain - MRPL44 ENSG00000228802 ncRNA_intronic Human antisense chr2:224832176 chr2:224832180 . . 0 25 hm5C_associated_SNPs_122101 0 0 0 3 224832161 224832184 mRNA hsa-let-7i MRPL44 miRanda miRanda
9424 chr1 161138831 161138831 1 + A G LIHC 161138828 + 161138808 161138848 41 ACTCATTCGCCAGGCCTTGGCTGAGCGCTGGAGCCAGTGGT ACTCATTCGCCAGGCCTTGGCTGGGCGCTGGAGCCAGTGGT < 41bp 0.599196163856948 0.81419280433696 0.2566942 0.38164115 prediction 0.429993280960022 Functional Gain - PPOX ENSG00000143224 CDS Human protein_coding chr1:161138828 chr1:161138831 nonsynonymous SNV 0.994 5 24 hm5C_associated_SNPs_122120 0 0 1 1 161138826 161138850 mRNA hsa-miR-504 PPOX miRanda miRanda
9425 chr1 156556394 156556394 1 + A G rs41267387 156556391 + 156556371 156556411 41 CCTGAAGCACCTGTCCAACACGCACACACTAGGGGGTCCTG CCTGAAGCACCTGTCCAACACGCGCACACTAGGGGGTCCTG < 41bp 0.484380362748938 0.714987865364628 0.0644947 0.18604693 prediction 0.429975730729256 Functional Gain - TTC24 ENSG00000187862 UTR3 Human protein_coding chr1:156556391 chr1:156556394 . . 0 24 hm5C_associated_SNPs_122130 0 0 0 1 156556374 156556397 mRNA hsa-miR-210 TTC24 miRanda miRanda
9426 chr16 71674369 71674369 1 + C T UCEC 71674368 + 71674348 71674388 41 GGCCTCCTACTTTGTCCTTGCCGGATTCAGTGCCAGCTTTT GGCCTCCTACTTTGTCCTTGCTGGATTCAGTGCCAGCTTTT < 41bp 0.554030594608344 0.768901379879968 0.89002216 0.6555207 prediction 0.429741570543248 Functional Gain - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71674368 chr16:71674369 synonymous SNV . 0 22 hm5C_associated_SNPs_122176 0 0 0 4 71674366 71674388 mRNA hsa-miR-320a MARVELD3 miRanda miRanda
9427 chr16 71674369 71674369 1 + C T UCEC 71674368 + 71674348 71674388 41 GGCCTCCTACTTTGTCCTTGCCGGATTCAGTGCCAGCTTTT GGCCTCCTACTTTGTCCTTGCTGGATTCAGTGCCAGCTTTT < 41bp 0.554030594608344 0.768901379879968 0.89002216 0.6555207 prediction 0.429741570543248 Functional Gain - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71674368 chr16:71674369 synonymous SNV . 0 22 hm5C_associated_SNPs_122176 0 0 0 4 71674366 71674388 mRNA hsa-miR-320b MARVELD3 miRanda miRanda
9428 chr16 71674369 71674369 1 + C T UCEC 71674368 + 71674348 71674388 41 GGCCTCCTACTTTGTCCTTGCCGGATTCAGTGCCAGCTTTT GGCCTCCTACTTTGTCCTTGCTGGATTCAGTGCCAGCTTTT < 41bp 0.554030594608344 0.768901379879968 0.89002216 0.6555207 prediction 0.429741570543248 Functional Gain - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71674368 chr16:71674369 synonymous SNV . 0 22 hm5C_associated_SNPs_122176 0 0 0 4 71674368 71674388 mRNA hsa-miR-320c MARVELD3 miRanda miRanda
9429 chr16 71674369 71674369 1 + C T UCEC 71674368 + 71674348 71674388 41 GGCCTCCTACTTTGTCCTTGCCGGATTCAGTGCCAGCTTTT GGCCTCCTACTTTGTCCTTGCTGGATTCAGTGCCAGCTTTT < 41bp 0.554030594608344 0.768901379879968 0.89002216 0.6555207 prediction 0.429741570543248 Functional Gain - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71674368 chr16:71674369 synonymous SNV . 0 22 hm5C_associated_SNPs_122176 0 0 0 4 71674369 71674388 mRNA hsa-miR-320d MARVELD3 miRanda miRanda
9430 chr13 73330022 73330022 1 + A G rs188753421 73330019 + 73329999 73330039 41 GTGCCCAGAATAAAATATACCTCATGCCTAGGGTAGGGACA GTGCCCAGAATAAAATATACCTCGTGCCTAGGGTAGGGACA < 41bp 0.495609723170503 0.714850211651262 0.010231197 0.019950867 prediction 0.429700423302524 Functional Gain - BORA;DIS3 ENSG00000083520;ENSG00000136122 UTR3 Human other chr13:73330019 chr13:73330022 . . 0 24 hm5C_associated_SNPs_122184 0 0 1 1 73330003 73330022 mRNA hsa-miR-202 C13orf34 miRanda miRanda
9431 chr1 211462677 211462677 1 + C A COAD 211462676 + 211462656 211462696 41 TGGTAGCAGTTTCCTGTAGTCCCAATGCAGCCAACACCATC TGGTAGCAGTTTCCTGTAGTCACAATGCAGCCAACACCATC < 41bp 0.60449436862149 0.819283480134783 0.1361244 0.2515934 prediction 0.429578223026585 Functional Gain - RCOR3 ENSG00000117625 CDS Human protein_coding chr1:211462676 chr1:211462677 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_122210 0 0 1 2 211462665 211462685 mRNA hsa-miR-33a RCOR3 miRanda miRanda
9432 chr1 211462677 211462677 1 + C A COAD 211462676 + 211462656 211462696 41 TGGTAGCAGTTTCCTGTAGTCCCAATGCAGCCAACACCATC TGGTAGCAGTTTCCTGTAGTCACAATGCAGCCAACACCATC < 41bp 0.60449436862149 0.819283480134783 0.1361244 0.2515934 prediction 0.429578223026585 Functional Gain - RCOR3 ENSG00000117625 CDS Human protein_coding chr1:211462676 chr1:211462677 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_122210 0 0 1 2 211462666 211462685 mRNA hsa-miR-33b RCOR3 miRanda miRanda
9433 chr7 33573603 33573603 1 + T A rs142434516 33573599 + 33573579 33573619 41 CGGTGGATGCCGCCATTTCCCACCTGTTGAAGACTTGCCTG CGGTGGATGCCGCCATTTCCCACCAGTTGAAGACTTGCCTG < 41bp 0.663222638599427 0.877940292259493 0.08833149 0.2996443 prediction 0.429435307320132 Functional Gain - BBS9 ENSG00000122507 CDS Human protein_coding chr7:33573599 chr7:33573603 nonsynonymous SNV 0.987 4 25 hm5C_associated_SNPs_122250 1 0 0 1 33573587 33573609 mRNA hsa-miR-421 BBS9 miRanda miRanda
9434 chr17 78074207 78074207 1 + C G rs117359231 78074203 + 78074183 78074223 41 GGTGAGCACTGAAATAAGAGCACGCTGGGGCGTCCACACCA GGTGAGCACTGAAATAAGAGCACGGTGGGGCGTCCACACCA < 41bp 0.626205964105349 0.840917075044942 0.23604998 0.5235191 prediction 0.429422221879186 Functional Gain - CCDC40 ENSG00000141519 UTR3 Human protein_coding chr17:78074203 chr17:78074207 . . 0 25 hm5C_associated_SNPs_122256 1 0 0 1 78074185 78074207 mRNA hsa-miR-187 CCDC40 miRanda miRanda
9435 chr14 72205969 72205969 1 + A G rs186726855 72205966 + 72205946 72205986 41 CCCTCCATAGAAAGCATCCTCAGAGCACCTTCCCTGGCTTC CCCTCCATAGAAAGCATCCTCAGGGCACCTTCCCTGGCTTC < 41bp 0.577534381646412 0.792226406335549 0.96501166 0.9747211 prediction 0.429384049378273 Functional Gain - SIPA1L1 ENSG00000197555 UTR3 Human protein_coding chr14:72205966 chr14:72205969 . . 0 24 hm5C_associated_SNPs_122263 0 0 0 2 72205953 72205977 mRNA hsa-miR-18a SIPA1L1 miRanda miRanda
9436 chr14 72205969 72205969 1 + A G rs186726855 72205966 + 72205946 72205986 41 CCCTCCATAGAAAGCATCCTCAGAGCACCTTCCCTGGCTTC CCCTCCATAGAAAGCATCCTCAGGGCACCTTCCCTGGCTTC < 41bp 0.577534381646412 0.792226406335549 0.96501166 0.9747211 prediction 0.429384049378273 Functional Gain - SIPA1L1 ENSG00000197555 UTR3 Human protein_coding chr14:72205966 chr14:72205969 . . 0 24 hm5C_associated_SNPs_122263 0 0 0 2 72205956 72205977 mRNA hsa-miR-18b SIPA1L1 miRanda miRanda
9437 chr15 25425532 25425532 1 + T A LUSC 25425528 + 25425508 25425548 41 TCTCTCAGCCATGTGCTCAACACCTGGTGAGCTGAAGCTCA TCTCTCAGCCATGTGCTCAACACCAGGTGAGCTGAAGCTCA < 41bp 0.430052519495848 0.714567556254198 0.22871155 0.29470468 prediction 0.429135112508395 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25425528 chr15:25425532 . . 0 25 hm5C_associated_SNPs_122318 0 0 0 3 25425510 25425535 mRNA hsa-miR-199a-5p SNRPN miRanda miRanda
9438 chr15 25425532 25425532 1 + T A LUSC 25425528 + 25425508 25425548 41 TCTCTCAGCCATGTGCTCAACACCTGGTGAGCTGAAGCTCA TCTCTCAGCCATGTGCTCAACACCAGGTGAGCTGAAGCTCA < 41bp 0.430052519495848 0.714567556254198 0.22871155 0.29470468 prediction 0.429135112508395 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25425528 chr15:25425532 . . 0 25 hm5C_associated_SNPs_122318 0 0 0 3 25425510 25425535 mRNA hsa-miR-199b-5p SNRPN miRanda miRanda
9439 chr15 25425532 25425532 1 + T A LUSC 25425528 + 25425508 25425548 41 TCTCTCAGCCATGTGCTCAACACCTGGTGAGCTGAAGCTCA TCTCTCAGCCATGTGCTCAACACCAGGTGAGCTGAAGCTCA < 41bp 0.430052519495848 0.714567556254198 0.22871155 0.29470468 prediction 0.429135112508395 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25425528 chr15:25425532 . . 0 25 hm5C_associated_SNPs_122318 0 0 0 3 25425510 25425533 mRNA hsa-miR-296-3p SNRPN miRanda miRanda
9440 chr6 50683060 50683060 1 + T A UCEC 50683056 + 50683036 50683076 41 CCGGCCGTCACCCCCGACGCCTACTCTCTGAACTCTCTCCA CCGGCCGTCACCCCCGACGCCTACACTCTGAACTCTCTCCA < 41bp 0.353268280985018 0.714525418683361 0.13581213 0.2012173 prediction 0.429050837366722 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683056 chr6:50683060 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_122339 0 0 0 2 50683042 50683064 mRNA hsa-let-7i TFAP2D miRanda miRanda
9441 chr6 50683060 50683060 1 + T A UCEC 50683056 + 50683036 50683076 41 CCGGCCGTCACCCCCGACGCCTACTCTCTGAACTCTCTCCA CCGGCCGTCACCCCCGACGCCTACACTCTGAACTCTCTCCA < 41bp 0.353268280985018 0.714525418683361 0.13581213 0.2012173 prediction 0.429050837366722 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683056 chr6:50683060 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_122339 0 0 0 2 50683052 50683076 mRNA hsa-miR-185 TFAP2D miRanda miRanda
9442 chr1 26524852 26524852 1 + T C COAD 26524849 + 26524829 26524869 41 TCCAGAACATACAGGTTGCGCTGTACACCCTCTTCATCTGC TCCAGAACATACAGGTTGCGCTGCACACCCTCTTCATCTGC < 41bp 0.529161236530568 0.743611878085333 0.02337414 0.018436879 prediction 0.428901283109529 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524849 chr1:26524852 nonsynonymous SNV 0.826 5 24 hm5C_associated_SNPs_122375 0 0 0 1 26524851 26524873 mRNA hsa-miR-383 CATSPER4 miRanda miRanda
9443 chr6 117890830 117890830 1 + C T HNSC 117890829 + 117890809 117890849 41 CATCCCCAACGTGCAGCCCTCCGCATCTATCAGCAGGTTGC CATCCCCAACGTGCAGCCCTCTGCATCTATCAGCAGGTTGC < 41bp 0.461826135529885 0.714436857745158 0.03861764 0.12319544 prediction 0.428873715490316 Functional Gain - GOPC ENSG00000047932 CDS Human protein_coding chr6:117890829 chr6:117890830 nonsynonymous SNV 0.504 2 22 hm5C_associated_SNPs_122386 0 0 0 1 117890827 117890846 mRNA hsa-miR-370 DCBLD1 miRanda miRanda
9444 chr11 32999464 32999464 1 + C A rs560067042 32999460 + 32999440 32999480 41 TGCTCAATGCCCAAATAAGACACGCGGATATTGCTATTGTC TGCTCAATGCCCAAATAAGACACGAGGATATTGCTATTGTC < 41bp 0.326909907951021 0.714433979828862 0.19391015 0.21632299 prediction 0.428867959657725 Functional Gain - QSER1 ENSG00000060749 UTR3 Human protein_coding chr11:32999460 chr11:32999464 . . 0 25 hm5C_associated_SNPs_122390 0 0 1 1 32999444 32999464 mRNA hsa-miR-187 QSER1 miRanda miRanda
9445 chr6 160218358 160218358 1 + T C LUSC 160218356 + 160218336 160218376 41 CTCAGCATCATGTAGAAGCACTTGTGGAGCATCAGAATGGC CTCAGCATCATGTAGAAGCACTCGTGGAGCATCAGAATGGC < 41bp 0.433165753590632 0.71436580039856 0.06352419 0.049390227 prediction 0.428731600797121 Functional Gain - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160218356 chr6:160218358 synonymous SNV . 0 23 hm5C_associated_SNPs_122425 0 0 1 12 160218337 160218359 mRNA hsa-miR-302a MRPL18 miRanda miRanda
9446 chr6 160218358 160218358 1 + T C LUSC 160218356 + 160218336 160218376 41 CTCAGCATCATGTAGAAGCACTTGTGGAGCATCAGAATGGC CTCAGCATCATGTAGAAGCACTCGTGGAGCATCAGAATGGC < 41bp 0.433165753590632 0.71436580039856 0.06352419 0.049390227 prediction 0.428731600797121 Functional Gain - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160218356 chr6:160218358 synonymous SNV . 0 23 hm5C_associated_SNPs_122425 0 0 1 12 160218333 160218359 mRNA hsa-miR-302b MRPL18 miRanda miRanda
9447 chr6 160218358 160218358 1 + T C LUSC 160218356 + 160218336 160218376 41 CTCAGCATCATGTAGAAGCACTTGTGGAGCATCAGAATGGC CTCAGCATCATGTAGAAGCACTCGTGGAGCATCAGAATGGC < 41bp 0.433165753590632 0.71436580039856 0.06352419 0.049390227 prediction 0.428731600797121 Functional Gain - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160218356 chr6:160218358 synonymous SNV . 0 23 hm5C_associated_SNPs_122425 0 0 1 12 160218335 160218359 mRNA hsa-miR-302c MRPL18 miRanda miRanda
9448 chr6 160218358 160218358 1 + T C LUSC 160218356 + 160218336 160218376 41 CTCAGCATCATGTAGAAGCACTTGTGGAGCATCAGAATGGC CTCAGCATCATGTAGAAGCACTCGTGGAGCATCAGAATGGC < 41bp 0.433165753590632 0.71436580039856 0.06352419 0.049390227 prediction 0.428731600797121 Functional Gain - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160218356 chr6:160218358 synonymous SNV . 0 23 hm5C_associated_SNPs_122425 0 0 1 12 160218333 160218359 mRNA hsa-miR-302d MRPL18 miRanda miRanda
9449 chr6 160218358 160218358 1 + T C LUSC 160218356 + 160218336 160218376 41 CTCAGCATCATGTAGAAGCACTTGTGGAGCATCAGAATGGC CTCAGCATCATGTAGAAGCACTCGTGGAGCATCAGAATGGC < 41bp 0.433165753590632 0.71436580039856 0.06352419 0.049390227 prediction 0.428731600797121 Functional Gain - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160218356 chr6:160218358 synonymous SNV . 0 23 hm5C_associated_SNPs_122425 0 0 1 12 160218337 160218359 mRNA hsa-miR-372 MRPL18 miRanda miRanda
9450 chr6 160218358 160218358 1 + T C LUSC 160218356 + 160218336 160218376 41 CTCAGCATCATGTAGAAGCACTTGTGGAGCATCAGAATGGC CTCAGCATCATGTAGAAGCACTCGTGGAGCATCAGAATGGC < 41bp 0.433165753590632 0.71436580039856 0.06352419 0.049390227 prediction 0.428731600797121 Functional Gain - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160218356 chr6:160218358 synonymous SNV . 0 23 hm5C_associated_SNPs_122425 0 0 1 12 160218337 160218359 mRNA hsa-miR-373 MRPL18 miRanda miRanda
9451 chr6 160218358 160218358 1 + T C LUSC 160218356 + 160218336 160218376 41 CTCAGCATCATGTAGAAGCACTTGTGGAGCATCAGAATGGC CTCAGCATCATGTAGAAGCACTCGTGGAGCATCAGAATGGC < 41bp 0.433165753590632 0.71436580039856 0.06352419 0.049390227 prediction 0.428731600797121 Functional Gain - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160218356 chr6:160218358 synonymous SNV . 0 23 hm5C_associated_SNPs_122425 0 0 1 12 160218340 160218359 mRNA hsa-miR-520e MRPL18 miRanda miRanda
9452 chr6 160218358 160218358 1 + T C LUSC 160218356 + 160218336 160218376 41 CTCAGCATCATGTAGAAGCACTTGTGGAGCATCAGAATGGC CTCAGCATCATGTAGAAGCACTCGTGGAGCATCAGAATGGC < 41bp 0.433165753590632 0.71436580039856 0.06352419 0.049390227 prediction 0.428731600797121 Functional Gain - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160218356 chr6:160218358 synonymous SNV . 0 23 hm5C_associated_SNPs_122425 0 0 1 12 160218338 160218359 mRNA hsa-miR-520a-3p MRPL18 miRanda miRanda
9453 chr6 160218358 160218358 1 + T C LUSC 160218356 + 160218336 160218376 41 CTCAGCATCATGTAGAAGCACTTGTGGAGCATCAGAATGGC CTCAGCATCATGTAGAAGCACTCGTGGAGCATCAGAATGGC < 41bp 0.433165753590632 0.71436580039856 0.06352419 0.049390227 prediction 0.428731600797121 Functional Gain - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160218356 chr6:160218358 synonymous SNV . 0 23 hm5C_associated_SNPs_122425 0 0 1 12 160218339 160218359 mRNA hsa-miR-520b MRPL18 miRanda miRanda
9454 chr6 160218358 160218358 1 + T C LUSC 160218356 + 160218336 160218376 41 CTCAGCATCATGTAGAAGCACTTGTGGAGCATCAGAATGGC CTCAGCATCATGTAGAAGCACTCGTGGAGCATCAGAATGGC < 41bp 0.433165753590632 0.71436580039856 0.06352419 0.049390227 prediction 0.428731600797121 Functional Gain - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160218356 chr6:160218358 synonymous SNV . 0 23 hm5C_associated_SNPs_122425 0 0 1 12 160218338 160218359 mRNA hsa-miR-520c-3p MRPL18 miRanda miRanda
9455 chr6 160218358 160218358 1 + T C LUSC 160218356 + 160218336 160218376 41 CTCAGCATCATGTAGAAGCACTTGTGGAGCATCAGAATGGC CTCAGCATCATGTAGAAGCACTCGTGGAGCATCAGAATGGC < 41bp 0.433165753590632 0.71436580039856 0.06352419 0.049390227 prediction 0.428731600797121 Functional Gain - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160218356 chr6:160218358 synonymous SNV . 0 23 hm5C_associated_SNPs_122425 0 0 1 12 160218338 160218359 mRNA hsa-miR-520d-3p MRPL18 miRanda miRanda
9456 chr6 160218358 160218358 1 + T C LUSC 160218356 + 160218336 160218376 41 CTCAGCATCATGTAGAAGCACTTGTGGAGCATCAGAATGGC CTCAGCATCATGTAGAAGCACTCGTGGAGCATCAGAATGGC < 41bp 0.433165753590632 0.71436580039856 0.06352419 0.049390227 prediction 0.428731600797121 Functional Gain - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160218356 chr6:160218358 synonymous SNV . 0 23 hm5C_associated_SNPs_122425 0 0 1 12 160218341 160218359 mRNA hsa-miR-302e MRPL18 miRanda miRanda
9457 chr3 49051540 49051540 1 + C G ESCA 49051539 + 49051519 49051559 41 ATCGGATGGTTAAGGTAGACCCAGAGACCAGGTAATATATG ATCGGATGGTTAAGGTAGACCGAGAGACCAGGTAATATATG < 41bp 0.401675458334308 0.714300429408222 0.87962896 0.9079399 prediction 0.428600858816443 Functional Gain - WDR6 ENSG00000178252 CDS Human protein_coding chr3:49051539 chr3:49051540 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_122460 0 0 1 3 49051528 49051549 mRNA hsa-miR-149 WDR6 miRanda miRanda
9458 chr3 49051540 49051540 1 + C G ESCA 49051539 + 49051519 49051559 41 ATCGGATGGTTAAGGTAGACCCAGAGACCAGGTAATATATG ATCGGATGGTTAAGGTAGACCGAGAGACCAGGTAATATATG < 41bp 0.401675458334308 0.714300429408222 0.87962896 0.9079399 prediction 0.428600858816443 Functional Gain - WDR6 ENSG00000178252 CDS Human protein_coding chr3:49051539 chr3:49051540 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_122460 0 0 1 3 49051526 49051545 mRNA hsa-miR-330-5p WDR6 miRanda miRanda
9459 chr3 49051540 49051540 1 + C G ESCA 49051539 + 49051519 49051559 41 ATCGGATGGTTAAGGTAGACCCAGAGACCAGGTAATATATG ATCGGATGGTTAAGGTAGACCGAGAGACCAGGTAATATATG < 41bp 0.401675458334308 0.714300429408222 0.87962896 0.9079399 prediction 0.428600858816443 Functional Gain - WDR6 ENSG00000178252 CDS Human protein_coding chr3:49051539 chr3:49051540 nonsynonymous SNV 0.991 4 22 hm5C_associated_SNPs_122460 0 0 1 3 49051527 49051545 mRNA hsa-miR-326 WDR6 miRanda miRanda
9460 chr17 41362721 41362721 1 + C T rs13119 41362720 + 41362700 41362740 41 ATCCAACTTCAAGGGAATCTCCGCATTTCAATGAAAGGAGG ATCCAACTTCAAGGGAATCTCTGCATTTCAATGAAAGGAGG < 41bp 0.542169897684593 0.756283515502611 0.07421908 0.23365691 prediction 0.428227235636035 Functional Gain - NBR1 ENSG00000188554 UTR3 Human protein_coding chr17:41362720 chr17:41362721 . . 0 22 hm5C_associated_SNPs_122562 0 0 0 1 41362709 41362730 mRNA hsa-miR-203 NBR1 miRanda miRanda
9461 chrX 149887149 149887149 1 + C T SKCM 149887148 + 149887128 149887168 41 TGGAAGAGGCTCCACTTTTCCCAGGAGAATCAATTAAAGCC TGGAAGAGGCTCCACTTTTCCTAGGAGAATCAATTAAAGCC < 41bp 0.469140480232272 0.714112292025476 0.45925236 0.22235319 prediction 0.428224584050952 Functional Gain - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149887148 chrX:149887149 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_122564 0 0 1 2 149887146 149887171 mRNA hsa-miR-135a MTMR1 miRanda miRanda
9462 chrX 149887149 149887149 1 + C T SKCM 149887148 + 149887128 149887168 41 TGGAAGAGGCTCCACTTTTCCCAGGAGAATCAATTAAAGCC TGGAAGAGGCTCCACTTTTCCTAGGAGAATCAATTAAAGCC < 41bp 0.469140480232272 0.714112292025476 0.45925236 0.22235319 prediction 0.428224584050952 Functional Gain - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149887148 chrX:149887149 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_122564 0 0 1 2 149887146 149887171 mRNA hsa-miR-135b MTMR1 miRanda miRanda
9463 chrX 135290715 135290715 1 + C T OV 135290714 + 135290694 135290734 41 GCTGGCTGGGCAGCGTTTCACCGCTGTGGAGGACCAGTATT GCTGGCTGGGCAGCGTTTCACTGCTGTGGAGGACCAGTATT < 41bp 0.581954917388828 0.796059627106065 0.25906637 0.353818 prediction 0.428209419434474 Functional Gain - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135290714 chrX:135290715 synonymous SNV . 0 22 hm5C_associated_SNPs_122571 1 0 1 4 135290712 135290735 mRNA hsa-miR-200b FHL1 miRanda miRanda
9464 chrX 135290715 135290715 1 + C T OV 135290714 + 135290694 135290734 41 GCTGGCTGGGCAGCGTTTCACCGCTGTGGAGGACCAGTATT GCTGGCTGGGCAGCGTTTCACTGCTGTGGAGGACCAGTATT < 41bp 0.581954917388828 0.796059627106065 0.25906637 0.353818 prediction 0.428209419434474 Functional Gain - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135290714 chrX:135290715 synonymous SNV . 0 22 hm5C_associated_SNPs_122571 1 0 1 4 135290710 135290732 mRNA hsa-miR-193a-3p FHL1 miRanda miRanda
9465 chrX 135290715 135290715 1 + C T OV 135290714 + 135290694 135290734 41 GCTGGCTGGGCAGCGTTTCACCGCTGTGGAGGACCAGTATT GCTGGCTGGGCAGCGTTTCACTGCTGTGGAGGACCAGTATT < 41bp 0.581954917388828 0.796059627106065 0.25906637 0.353818 prediction 0.428209419434474 Functional Gain - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135290714 chrX:135290715 synonymous SNV . 0 22 hm5C_associated_SNPs_122571 1 0 1 4 135290713 135290735 mRNA hsa-miR-200c FHL1 miRanda miRanda
9466 chrX 135290715 135290715 1 + C T OV 135290714 + 135290694 135290734 41 GCTGGCTGGGCAGCGTTTCACCGCTGTGGAGGACCAGTATT GCTGGCTGGGCAGCGTTTCACTGCTGTGGAGGACCAGTATT < 41bp 0.581954917388828 0.796059627106065 0.25906637 0.353818 prediction 0.428209419434474 Functional Gain - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135290714 chrX:135290715 synonymous SNV . 0 22 hm5C_associated_SNPs_122571 1 0 1 4 135290713 135290735 mRNA hsa-miR-429 FHL1 miRanda miRanda
9467 chr9 138478921 138478921 1 + C A rs2770825 138478920 + 138478900 138478940 41 GGACCAGCACCCAACACAGCCCAGGGCTCCCCTGACCCACA GGACCAGCACCCAACACAGCCAAGGGCTCCCCTGACCCACA < 41bp 0.463574069358559 0.714104705932156 0.052175313 0.83508563 prediction 0.428209411864312 Functional Gain - LINC01502 ENSG00000237339 ncRNA_exonic Human lincRNA chr9:138478920 chr9:138478921 . . 0 22 hm5C_associated_SNPs_122572 0 0 0 1 138478920 138478942 mRNA hsa-miR-299-3p LOC100130954 miRanda miRanda
9468 chr10 112839756 112839756 1 + C G rs41286894 112839755 + 112839735 112839775 41 GCTGTCTGGTTCAGGCCAAGCCCCTTTGCAATGCAAGCCCT GCTGTCTGGTTCAGGCCAAGCGCCTTTGCAATGCAAGCCCT < 41bp 0.411200079846674 0.714048026262077 0.09537125 0.087920845 prediction 0.428096052524154 Functional Gain - ADRA2A ENSG00000150594 UTR3 Human protein_coding chr10:112839755 chr10:112839756 . . 0 22 hm5C_associated_SNPs_122587 0 0 0 2 112839749 112839770 mRNA hsa-miR-33a ADRA2A miRanda miRanda
9469 chr10 112839756 112839756 1 + C G rs41286894 112839755 + 112839735 112839775 41 GCTGTCTGGTTCAGGCCAAGCCCCTTTGCAATGCAAGCCCT GCTGTCTGGTTCAGGCCAAGCGCCTTTGCAATGCAAGCCCT < 41bp 0.411200079846674 0.714048026262077 0.09537125 0.087920845 prediction 0.428096052524154 Functional Gain - ADRA2A ENSG00000150594 UTR3 Human protein_coding chr10:112839755 chr10:112839756 . . 0 22 hm5C_associated_SNPs_122587 0 0 0 2 112839751 112839770 mRNA hsa-miR-33b ADRA2A miRanda miRanda
9470 chr11 22759270 22759270 1 + A G COAD 22759267 + 22759247 22759287 41 TCAGTCCTCCACAAGCAACCCAGAGAAGTGTGTCTCTGTCT TCAGTCCTCCACAAGCAACCCAGGGAAGTGTGTCTCTGTCT < 41bp 0.581446879175448 0.795494527864956 0.38781708 0.80297005 prediction 0.428095297379016 Functional Gain - GAS2 ENSG00000148935 CDS Human protein_coding chr11:22759267 chr11:22759270 synonymous SNV . 0 24 hm5C_associated_SNPs_122589 0 0 1 3 22759270 22759291 mRNA hsa-miR-195 GAS2 miRanda miRanda
9471 chr11 22759270 22759270 1 + A G COAD 22759267 + 22759247 22759287 41 TCAGTCCTCCACAAGCAACCCAGAGAAGTGTGTCTCTGTCT TCAGTCCTCCACAAGCAACCCAGGGAAGTGTGTCTCTGTCT < 41bp 0.581446879175448 0.795494527864956 0.38781708 0.80297005 prediction 0.428095297379016 Functional Gain - GAS2 ENSG00000148935 CDS Human protein_coding chr11:22759267 chr11:22759270 synonymous SNV . 0 24 hm5C_associated_SNPs_122589 0 0 1 3 22759251 22759272 mRNA hsa-miR-330-5p GAS2 miRanda miRanda
9472 chr11 22759270 22759270 1 + A G COAD 22759267 + 22759247 22759287 41 TCAGTCCTCCACAAGCAACCCAGAGAAGTGTGTCTCTGTCT TCAGTCCTCCACAAGCAACCCAGGGAAGTGTGTCTCTGTCT < 41bp 0.581446879175448 0.795494527864956 0.38781708 0.80297005 prediction 0.428095297379016 Functional Gain - GAS2 ENSG00000148935 CDS Human protein_coding chr11:22759267 chr11:22759270 synonymous SNV . 0 24 hm5C_associated_SNPs_122589 0 0 1 3 22759253 22759272 mRNA hsa-miR-326 GAS2 miRanda miRanda
9473 chr2 122522723 122522723 1 + T C PAAD 122522720 + 122522700 122522740 41 CCTGGTACAGTCGAGGCTGTCTGTCAACAGCGTGACTGCTG CCTGGTACAGTCGAGGCTGTCTGCCAACAGCGTGACTGCTG < 41bp 0.492625683068811 0.714045359222726 0.13925305 0.15265757 prediction 0.428090718445452 Functional Gain - TSN ENSG00000211460 CDS Human protein_coding chr2:122522720 chr2:122522723 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_122592 0 0 1 2 122522721 122522742 mRNA hsa-miR-338-3p TSN miRanda miRanda
9474 chr2 122522723 122522723 1 + T C PAAD 122522720 + 122522700 122522740 41 CCTGGTACAGTCGAGGCTGTCTGTCAACAGCGTGACTGCTG CCTGGTACAGTCGAGGCTGTCTGCCAACAGCGTGACTGCTG < 41bp 0.492625683068811 0.714045359222726 0.13925305 0.15265757 prediction 0.428090718445452 Functional Gain - TSN ENSG00000211460 CDS Human protein_coding chr2:122522720 chr2:122522723 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_122592 0 0 1 2 122522719 122522740 mRNA hsa-miR-497 TSN miRanda miRanda
9475 chr4 186066058 186066058 1 + C T rs145413043 186066057 + 186066037 186066077 41 CGTGATCCGTTACTTCCCCACCCAAGCTCTCAACTTCGCCT CGTGATCCGTTACTTCCCCACTCAAGCTCTCAACTTCGCCT < 41bp 0.43902158863169 0.714031374174343 0.17306632 0.28128198 prediction 0.428062748348687 Functional Gain - SLC25A4 ENSG00000151729 CDS Human protein_coding chr4:186066057 chr4:186066058 synonymous SNV . 0 22 hm5C_associated_SNPs_122598 0 0 1 1 186066037 186066058 mRNA hsa-miR-491-5p SLC25A4 miRanda miRanda
9476 chr12 66717889 66717889 1 + T C UCEC 66717886 + 66717866 66717906 41 CAAAATAATGATCTAGATGCCAGTAGTGAAGACTTTTCTGG CAAAATAATGATCTAGATGCCAGCAGTGAAGACTTTTCTGG < 41bp 0.510356310372491 0.724343871550158 0.16755155 0.16670817 prediction 0.427975122355335 Functional Gain - HELB ENSG00000127311 CDS Human protein_coding chr12:66717886 chr12:66717889 synonymous SNV . 0 24 hm5C_associated_SNPs_122614 0 0 0 1 66717866 66717890 mRNA hsa-miR-217 HELB miRanda miRanda
9477 chr1 76254929 76254929 1 + T C LUAD 76254927 + 76254907 76254947 41 CTCATGGGACAACTTCATCGCATGAATAGAGAAGAGATTCT CTCATGGGACAACTTCATCGCACGAATAGAGAAGAGATTCT < 41bp 0.624978190359418 0.838922249486606 0.064582944 0.02443266 prediction 0.427888118254376 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76254927 chr1:76254929 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_122637 0 0 1 1 76254925 76254946 mRNA hsa-miR-216b RABGGTB miRanda miRanda
9478 chr3 41275668 41275668 1 + C A THCA 41275667 + 41275647 41275687 41 TCGAAATCTTGCCCTTTGTCCCGCAAATCATGCACCTTTGC TCGAAATCTTGCCCTTTGTCCAGCAAATCATGCACCTTTGC < 41bp 0.459257005307881 0.713941903305094 0.0518336 0.1824167 prediction 0.427883806610188 Functional Gain - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275667 chr3:41275668 synonymous SNV . 0 22 hm5C_associated_SNPs_122643 0 0 1 2 41275663 41275685 mRNA hsa-miR-18a CTNNB1 miRanda miRanda
9479 chr3 41275668 41275668 1 + C A THCA 41275667 + 41275647 41275687 41 TCGAAATCTTGCCCTTTGTCCCGCAAATCATGCACCTTTGC TCGAAATCTTGCCCTTTGTCCAGCAAATCATGCACCTTTGC < 41bp 0.459257005307881 0.713941903305094 0.0518336 0.1824167 prediction 0.427883806610188 Functional Gain - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275667 chr3:41275668 synonymous SNV . 0 22 hm5C_associated_SNPs_122643 0 0 1 2 41275663 41275685 mRNA hsa-miR-18b CTNNB1 miRanda miRanda
9480 chr7 129395781 129395781 1 + A G rs537613397 129395778 + 129395758 129395798 41 TGTCTTGAAAGCTCCCGGGCCTCAGCCTCCCATCTCCTCTC TGTCTTGAAAGCTCCCGGGCCTCGGCCTCCCATCTCCTCTC < 41bp 0.460692222466466 0.713839860596786 0.17695704 0.3549707 prediction 0.427679721193571 Functional Gain - NRF1 ENSG00000106459 UTR3 Human protein_coding chr7:129395778 chr7:129395781 . . 0 24 hm5C_associated_SNPs_122703 0 0 1 1 129395763 129395787 mRNA hsa-miR-485-5p NRF1 miRanda miRanda
9481 chr19 17388174 17388174 1 + T A rs139467293 17388170 + 17388150 17388190 41 ACAGGTACCTGCCATCATACCAGGTTAATTTTTGTATTTTT ACAGGTACCTGCCATCATACCAGGATAATTTTTGTATTTTT < 41bp 0.612230787193065 0.826050615274083 0.89708304 0.89623845 prediction 0.427639656162037 Functional Gain - BABAM1 ENSG00000105393;ENSG00000130307;ENSG00000269307 intronic Human other chr19:17388170 chr19:17388174 . . 0 25 hm5C_associated_SNPs_122713 0 0 0 1 17388154 17388176 mRNA hsa-miR-490-3p C19orf62 miRanda miRanda
9482 chr2 97783836 97783836 1 + C A UCEC 97783835 + 97783815 97783855 41 TGGCCTGTGCCACTGGCCAACCGGAAATGGTACATCTCCTG TGGCCTGTGCCACTGGCCAACAGGAAATGGTACATCTCCTG < 41bp 0.55351797676547 0.767304359258326 0.8396388 0.9057837 prediction 0.427572764985711 Functional Gain - ANKRD36 ENSG00000135976 CDS Human protein_coding chr2:97783835 chr2:97783836 nonsynonymous SNV 0.000 3 22 hm5C_associated_SNPs_122727 0 0 0 1 97783834 97783854 mRNA hsa-miR-613 ANKRD36 miRanda miRanda
9483 chr4 115544645 115544645 1 + C G SKCM 115544644 + 115544624 115544664 41 TACCGGTGTTTACCTCATTTCCAGATTAGGGGTCAGCTTTC TACCGGTGTTTACCTCATTTCGAGATTAGGGGTCAGCTTTC < 41bp 0.674866239734675 0.888595408447206 0.8720385 0.9197934 prediction 0.427458337425062 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115544644 chr4:115544645 synonymous SNV . 0 22 hm5C_associated_SNPs_122756 0 0 0 3 115544643 115544664 mRNA hsa-miR-320a UGT8 miRanda miRanda
9484 chr4 115544645 115544645 1 + C G SKCM 115544644 + 115544624 115544664 41 TACCGGTGTTTACCTCATTTCCAGATTAGGGGTCAGCTTTC TACCGGTGTTTACCTCATTTCGAGATTAGGGGTCAGCTTTC < 41bp 0.674866239734675 0.888595408447206 0.8720385 0.9197934 prediction 0.427458337425062 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115544644 chr4:115544645 synonymous SNV . 0 22 hm5C_associated_SNPs_122756 0 0 0 3 115544643 115544664 mRNA hsa-miR-320b UGT8 miRanda miRanda
9485 chr4 115544645 115544645 1 + C G SKCM 115544644 + 115544624 115544664 41 TACCGGTGTTTACCTCATTTCCAGATTAGGGGTCAGCTTTC TACCGGTGTTTACCTCATTTCGAGATTAGGGGTCAGCTTTC < 41bp 0.674866239734675 0.888595408447206 0.8720385 0.9197934 prediction 0.427458337425062 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115544644 chr4:115544645 synonymous SNV . 0 22 hm5C_associated_SNPs_122756 0 0 0 3 115544645 115544664 mRNA hsa-miR-320c UGT8 miRanda miRanda
9486 chr3 52523677 52523677 1 + C T SKCM 52523676 + 52523656 52523696 41 AGCGCCATCATCGAGCTCTTCCACAGCAGCATTGCTGAGGT AGCGCCATCATCGAGCTCTTCTACAGCAGCATTGCTGAGGT < 41bp 0.451234191339317 0.713660625534561 0.30421543 0.90323967 prediction 0.427321251069121 Functional Gain - NISCH ENSG00000010322 CDS Human protein_coding chr3:52523676 chr3:52523677 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_122784 0 0 1 1 52523654 52523678 mRNA hsa-miR-7 NISCH miRanda miRanda
9487 chr1 179460836 179460836 1 + C A HNSC 179460832 + 179460812 179460852 41 TGGAGCTAGATGCGATTGAACTGACAAGGAAGTTGTACCAA TGGAGCTAGATGCGATTGAACTGAAAAGGAAGTTGTACCAA < 41bp 0.295686533457462 0.713629249713348 0.07655397 0.12057418 prediction 0.427258499426697 Functional Gain - AXDND1 ENSG00000162779 CDS Human protein_coding chr1:179460832 chr1:179460836 nonsynonymous SNV 0.174 0 25 hm5C_associated_SNPs_122799 0 0 0 1 179460815 179460837 mRNA hsa-miR-223 C1orf125 miRanda miRanda
9488 chr19 55019139 55019139 1 + C T rs543011776 55019138 + 55019118 55019158 41 GACCCTCCATCTCGGCTGAGCCAGGCACTGTGATCTCCCCG GACCCTCCATCTCGGCTGAGCTAGGCACTGTGATCTCCCCG < 41bp 0.497726596315482 0.71351877493182 0.47022143 0.19275162 prediction 0.427037549863641 Functional Gain - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019138 chr19:55019139 nonsynonymous SNV 0.011 3 22 hm5C_associated_SNPs_122851 0 0 0 3 55019119 55019140 mRNA hsa-miR-24 LAIR2 miRanda miRanda
9489 chr19 55019139 55019139 1 + C T rs543011776 55019138 + 55019118 55019158 41 GACCCTCCATCTCGGCTGAGCCAGGCACTGTGATCTCCCCG GACCCTCCATCTCGGCTGAGCTAGGCACTGTGATCTCCCCG < 41bp 0.497726596315482 0.71351877493182 0.47022143 0.19275162 prediction 0.427037549863641 Functional Gain - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019138 chr19:55019139 nonsynonymous SNV 0.011 3 22 hm5C_associated_SNPs_122851 0 0 0 3 55019132 55019150 mRNA hsa-miR-128 LAIR2 miRanda miRanda
9490 chr19 55019139 55019139 1 + C T rs543011776 55019138 + 55019118 55019158 41 GACCCTCCATCTCGGCTGAGCCAGGCACTGTGATCTCCCCG GACCCTCCATCTCGGCTGAGCTAGGCACTGTGATCTCCCCG < 41bp 0.497726596315482 0.71351877493182 0.47022143 0.19275162 prediction 0.427037549863641 Functional Gain - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019138 chr19:55019139 nonsynonymous SNV 0.011 3 22 hm5C_associated_SNPs_122851 0 0 0 3 55019120 55019142 mRNA hsa-miR-149 LAIR2 miRanda miRanda
9491 chr15 89020250 89020250 1 + C T UCEC 89020249 + 89020229 89020269 41 CAAAAGGGCGTGATCCACATCCGAGTTGTGGTGAAAGGCCT CAAAAGGGCGTGATCCACATCTGAGTTGTGGTGAAAGGCCT < 41bp 0.46681412673519 0.71339735905349 0.35410285 0.3287965 prediction 0.42679471810698 Functional Gain - MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89020249 chr15:89020250 stopgain 0.948 1 22 hm5C_associated_SNPs_122912 0 0 1 1 89020242 89020263 mRNA hsa-miR-197 MRPS11 miRanda miRanda
9492 chr1 205561373 205561373 1 + C T LIHC 205561372 + 205561352 205561392 41 CTGTTTCTCAGCAGCACCTTCCCCAGCATGCTGGCCTACAC CTGTTTCTCAGCAGCACCTTCTCCAGCATGCTGGCCTACAC < 41bp 0.650834351517632 0.864220001400023 0.16282254 0.9505105 prediction 0.426771299764781 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561372 chr1:205561373 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_122920 0 0 0 1 205561365 205561386 mRNA hsa-miR-338-3p MFSD4 miRanda miRanda
9493 chr15 25438464 25438464 1 + A G rs532001189 25438461 + 25438441 25438481 41 TGCGCCGGGAAGGACGTGCCCTGAGTTGGGTCGATGATGAG TGCGCCGGGAAGGACGTGCCCTGGGTTGGGTCGATGATGAG < 41bp 0.547198870097221 0.760564504544024 0.06761202 0.12040928 prediction 0.426731268893605 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25438461 chr15:25438464 . . 0 24 hm5C_associated_SNPs_122936 0 0 0 2 25438453 25438474 mRNA hsa-miR-551a SNRPN miRanda miRanda
9494 chr15 25438464 25438464 1 + A G rs532001189 25438461 + 25438441 25438481 41 TGCGCCGGGAAGGACGTGCCCTGAGTTGGGTCGATGATGAG TGCGCCGGGAAGGACGTGCCCTGGGTTGGGTCGATGATGAG < 41bp 0.547198870097221 0.760564504544024 0.06761202 0.12040928 prediction 0.426731268893605 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25438461 chr15:25438464 . . 0 24 hm5C_associated_SNPs_122936 0 0 0 2 25438455 25438474 mRNA hsa-miR-551b SNRPN miRanda miRanda
9495 chr14 20942941 20942941 1 + C T MESO 20942940 + 20942920 20942960 41 TTTGCTTCGAAGGTGACATTCCCAGTGAGGGTTTTCCACCT TTTGCTTCGAAGGTGACATTCTCAGTGAGGGTTTTCCACCT < 41bp 0.449652255773759 0.713236715830251 0.2881239 0.26503634 prediction 0.426473431660501 Functional Gain - PNP ENSG00000198805 CDS Human protein_coding chr14:20942940 chr14:20942941 nonsynonymous SNV 0.940 5 22 hm5C_associated_SNPs_123017 0 0 1 3 20942917 20942942 mRNA hsa-miR-1 PNP miRanda miRanda
9496 chr14 20942941 20942941 1 + C T MESO 20942940 + 20942920 20942960 41 TTTGCTTCGAAGGTGACATTCCCAGTGAGGGTTTTCCACCT TTTGCTTCGAAGGTGACATTCTCAGTGAGGGTTTTCCACCT < 41bp 0.449652255773759 0.713236715830251 0.2881239 0.26503634 prediction 0.426473431660501 Functional Gain - PNP ENSG00000198805 CDS Human protein_coding chr14:20942940 chr14:20942941 nonsynonymous SNV 0.940 5 22 hm5C_associated_SNPs_123017 0 0 1 3 20942921 20942942 mRNA hsa-miR-206 PNP miRanda miRanda
9497 chr14 20942941 20942941 1 + C T MESO 20942940 + 20942920 20942960 41 TTTGCTTCGAAGGTGACATTCCCAGTGAGGGTTTTCCACCT TTTGCTTCGAAGGTGACATTCTCAGTGAGGGTTTTCCACCT < 41bp 0.449652255773759 0.713236715830251 0.2881239 0.26503634 prediction 0.426473431660501 Functional Gain - PNP ENSG00000198805 CDS Human protein_coding chr14:20942940 chr14:20942941 nonsynonymous SNV 0.940 5 22 hm5C_associated_SNPs_123017 0 0 1 3 20942922 20942942 mRNA hsa-miR-613 PNP miRanda miRanda
9498 chr20 54978941 54978941 1 + T C rs565582750 54978939 + 54978919 54978959 41 ATAAAAGAATCTTTTTTTACCTTGATGTAGAATCATGGTGG ATAAAAGAATCTTTTTTTACCTCGATGTAGAATCATGGTGG < 41bp 0.609759234966122 0.822935089517818 0.11601028 0.34301135 prediction 0.426351709103392 Functional Gain - CSTF1 ENSG00000101138 UTR3 Human protein_coding chr20:54978939 chr20:54978941 . . 0 23 hm5C_associated_SNPs_123044 0 0 1 2 54978922 54978944 mRNA hsa-miR-26a CSTF1 miRanda miRanda
9499 chr20 54978941 54978941 1 + T C rs565582750 54978939 + 54978919 54978959 41 ATAAAAGAATCTTTTTTTACCTTGATGTAGAATCATGGTGG ATAAAAGAATCTTTTTTTACCTCGATGTAGAATCATGGTGG < 41bp 0.609759234966122 0.822935089517818 0.11601028 0.34301135 prediction 0.426351709103392 Functional Gain - CSTF1 ENSG00000101138 UTR3 Human protein_coding chr20:54978939 chr20:54978941 . . 0 23 hm5C_associated_SNPs_123044 0 0 1 2 54978923 54978944 mRNA hsa-miR-26b CSTF1 miRanda miRanda
9500 chr11 47351416 47351416 1 + C A rs75814210 47351415 + 47351395 47351435 41 CAGGGAGGGGGCAGGAAAGACCAAGCTGGGTTTGCACATCT CAGGGAGGGGGCAGGAAAGACAAAGCTGGGTTTGCACATCT < 41bp 0.545685940618466 0.758768507022173 0.63121116 0.6349396 prediction 0.426165132807413 Functional Gain - MADD ENSG00000110514 UTR3 Human protein_coding chr11:47351415 chr11:47351416 . . 0 22 hm5C_associated_SNPs_123086 0 0 0 2 47351411 47351432 mRNA hsa-miR-19a MADD miRanda miRanda
9501 chr11 47351416 47351416 1 + C A rs75814210 47351415 + 47351395 47351435 41 CAGGGAGGGGGCAGGAAAGACCAAGCTGGGTTTGCACATCT CAGGGAGGGGGCAGGAAAGACAAAGCTGGGTTTGCACATCT < 41bp 0.545685940618466 0.758768507022173 0.63121116 0.6349396 prediction 0.426165132807413 Functional Gain - MADD ENSG00000110514 UTR3 Human protein_coding chr11:47351415 chr11:47351416 . . 0 22 hm5C_associated_SNPs_123086 0 0 0 2 47351411 47351432 mRNA hsa-miR-19b MADD miRanda miRanda
9502 chr5 42801028 42801028 1 + A G rs28919925 42801025 + 42801005 42801045 41 TTTACACTGTCAGGTGATTGCAGACCCTGTTTTTTCAAATA TTTACACTGTCAGGTGATTGCAGGCCCTGTTTTTTCAAATA < 41bp 0.48279347345872 0.713080417906376 0.41224676 0.8882125 prediction 0.426160835812752 Functional Gain - SELENOP ENSG00000250722 CDS Human protein_coding chr5:42801025 chr5:42801028 unknown 0.999 1 24 hm5C_associated_SNPs_123089 0 0 0 1 42801014 42801036 mRNA hsa-miR-212 CCDC152 miRanda miRanda
9503 chr2 27322645 27322645 1 - A G rs189674797 27322647 - 27322627 27322667 41 GCAGCCGCAATGGTAGTCTCCATGGTGTGTGAGGAGCCGGC GCAGCCGCAATGGTAGTCTCCACGGTGTGTGAGGAGCCGGC < 41bp 0.545177547151145 0.758159191245163 0.26843446 0.4536148 prediction 0.425963288188036 Functional Gain - CGREF1;KHK ENSG00000138028;ENSG00000138030 UTR3 Human other chr2:27322647 chr2:27322645 . . 0 23 hm5C_associated_SNPs_123132 1 0 0 4 27322637 27322651 mRNA hsa-miR-362-3p CGREF1 miRanda miRanda
9504 chr2 27322645 27322645 1 - A G rs189674797 27322647 - 27322627 27322667 41 GCAGCCGCAATGGTAGTCTCCATGGTGTGTGAGGAGCCGGC GCAGCCGCAATGGTAGTCTCCACGGTGTGTGAGGAGCCGGC < 41bp 0.545177547151145 0.758159191245163 0.26843446 0.4536148 prediction 0.425963288188036 Functional Gain - CGREF1;KHK ENSG00000138028;ENSG00000138030 UTR3 Human other chr2:27322647 chr2:27322645 . . 0 23 hm5C_associated_SNPs_123132 1 0 0 4 27322635 27322651 mRNA hsa-miR-377 CGREF1 miRanda miRanda
9505 chr2 27322645 27322645 1 - A G rs189674797 27322647 - 27322627 27322667 41 GCAGCCGCAATGGTAGTCTCCATGGTGTGTGAGGAGCCGGC GCAGCCGCAATGGTAGTCTCCACGGTGTGTGAGGAGCCGGC < 41bp 0.545177547151145 0.758159191245163 0.26843446 0.4536148 prediction 0.425963288188036 Functional Gain - CGREF1;KHK ENSG00000138028;ENSG00000138030 UTR3 Human other chr2:27322647 chr2:27322645 . . 0 23 hm5C_associated_SNPs_123132 1 0 0 4 27322634 27322651 mRNA hsa-miR-342-3p CGREF1 miRanda miRanda
9506 chr2 27322645 27322645 1 - A G rs189674797 27322647 - 27322627 27322667 41 GCAGCCGCAATGGTAGTCTCCATGGTGTGTGAGGAGCCGGC GCAGCCGCAATGGTAGTCTCCACGGTGTGTGAGGAGCCGGC < 41bp 0.545177547151145 0.758159191245163 0.26843446 0.4536148 prediction 0.425963288188036 Functional Gain - CGREF1;KHK ENSG00000138028;ENSG00000138030 UTR3 Human other chr2:27322647 chr2:27322645 . . 0 23 hm5C_associated_SNPs_123132 1 0 0 4 27322637 27322651 mRNA hsa-miR-329 CGREF1 miRanda miRanda
9507 chr14 57075932 57075932 1 + T C CESC 57075930 + 57075910 57075950 41 CCTTAATCACGCCCGGTGGACCTGGGGAGACCAGACAACAC CCTTAATCACGCCCGGTGGACCCGGGGAGACCAGACAACAC < 41bp 0.433418901007835 0.712794945446689 0.24178803 0.22630477 prediction 0.425589890893378 Functional Gain - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57075930 chr14:57075932 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_123223 0 0 0 1 57075921 57075944 mRNA hsa-miR-149 C14orf101 miRanda miRanda
9508 chr16 698400 698400 1 + T G rs45598439 698397 + 698377 698417 41 CGTCTGACCTCAGCCCTGCTCACTGTGCCCAGGGACCAGCG CGTCTGACCTCAGCCCTGCTCACGGTGCCCAGGGACCAGCG < 41bp 0.697727050773349 0.910424940043715 0.20842782 0.9059861 prediction 0.425395778540733 Functional Gain - MCRIP2 ENSG00000172366 UTR3 Human protein_coding chr16:698397 chr16:698400 . . 0 24 hm5C_associated_SNPs_123282 0 0 1 1 698384 698404 mRNA hsa-miR-128 FAM195A miRanda miRanda
9509 chr20 44048183 44048183 1 + C T rs574183358 44048182 + 44048162 44048202 41 CTGAAGGCAGATCGCTTGTTCCACACCAGCTACCACTCCCA CTGAAGGCAGATCGCTTGTTCTACACCAGCTACCACTCCCA < 41bp 0.576558409368757 0.789217628649211 0.057375968 0.32561362 prediction 0.425318438560907 Functional Gain - PIGT ENSG00000124155 CDS Human protein_coding chr20:44048182 chr20:44048183 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_123299 2 0 1 1 44048173 44048192 mRNA hsa-miR-138 PIGT miRanda miRanda
9510 chr19 42300634 42300634 1 + C T SKCM 42300633 + 42300613 42300653 41 GGGCCCCCCTCAGCCTCTCCCCACAGAGAATGCATCCCCTG GGGCCCCCCTCAGCCTCTCCCTACAGAGAATGCATCCCCTG < 41bp 0.572431415284928 0.785006009461086 0.13528359 0.30997038 prediction 0.425149188352314 Functional Gain - CEACAM3 ENSG00000170956 CDS Human protein_coding chr19:42300633 chr19:42300634 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_123341 0 0 0 1 42300616 42300637 mRNA hsa-miR-491-5p CEACAM3 miRanda miRanda
9511 chr19 49459501 49459501 1 + C T COAD 49459500 + 49459480 49459520 41 TCCCCCCGAGAGGTCTTTTTCCGAGTGGCAGCTGACATGTT TCCCCCCGAGAGGTCTTTTTCTGAGTGGCAGCTGACATGTT < 41bp 0.593962748710085 0.806473483574249 0.90903807 0.83895844 prediction 0.42502146972833 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49459500 chr19:49459501 stopgain 1.000 1 22 hm5C_associated_SNPs_123370 0 0 1 7 49459492 49459513 mRNA hsa-miR-22 BAX miRanda miRanda
9512 chr19 49459501 49459501 1 + C T COAD 49459500 + 49459480 49459520 41 TCCCCCCGAGAGGTCTTTTTCCGAGTGGCAGCTGACATGTT TCCCCCCGAGAGGTCTTTTTCTGAGTGGCAGCTGACATGTT < 41bp 0.593962748710085 0.806473483574249 0.90903807 0.83895844 prediction 0.42502146972833 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49459500 chr19:49459501 stopgain 1.000 1 22 hm5C_associated_SNPs_123370 0 0 1 7 49459495 49459520 mRNA hsa-miR-181a BAX miRanda miRanda
9513 chr19 49459501 49459501 1 + C T COAD 49459500 + 49459480 49459520 41 TCCCCCCGAGAGGTCTTTTTCCGAGTGGCAGCTGACATGTT TCCCCCCGAGAGGTCTTTTTCTGAGTGGCAGCTGACATGTT < 41bp 0.593962748710085 0.806473483574249 0.90903807 0.83895844 prediction 0.42502146972833 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49459500 chr19:49459501 stopgain 1.000 1 22 hm5C_associated_SNPs_123370 0 0 1 7 49459495 49459520 mRNA hsa-miR-181b BAX miRanda miRanda
9514 chr19 49459501 49459501 1 + C T COAD 49459500 + 49459480 49459520 41 TCCCCCCGAGAGGTCTTTTTCCGAGTGGCAGCTGACATGTT TCCCCCCGAGAGGTCTTTTTCTGAGTGGCAGCTGACATGTT < 41bp 0.593962748710085 0.806473483574249 0.90903807 0.83895844 prediction 0.42502146972833 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49459500 chr19:49459501 stopgain 1.000 1 22 hm5C_associated_SNPs_123370 0 0 1 7 49459500 49459521 mRNA hsa-miR-212 BAX miRanda miRanda
9515 chr19 49459501 49459501 1 + C T COAD 49459500 + 49459480 49459520 41 TCCCCCCGAGAGGTCTTTTTCCGAGTGGCAGCTGACATGTT TCCCCCCGAGAGGTCTTTTTCTGAGTGGCAGCTGACATGTT < 41bp 0.593962748710085 0.806473483574249 0.90903807 0.83895844 prediction 0.42502146972833 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49459500 chr19:49459501 stopgain 1.000 1 22 hm5C_associated_SNPs_123370 0 0 1 7 49459499 49459521 mRNA hsa-miR-132 BAX miRanda miRanda
9516 chr19 49459501 49459501 1 + C T COAD 49459500 + 49459480 49459520 41 TCCCCCCGAGAGGTCTTTTTCCGAGTGGCAGCTGACATGTT TCCCCCCGAGAGGTCTTTTTCTGAGTGGCAGCTGACATGTT < 41bp 0.593962748710085 0.806473483574249 0.90903807 0.83895844 prediction 0.42502146972833 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49459500 chr19:49459501 stopgain 1.000 1 22 hm5C_associated_SNPs_123370 0 0 1 7 49459495 49459520 mRNA hsa-miR-181d BAX miRanda miRanda
9517 chr19 49459501 49459501 1 + C T COAD 49459500 + 49459480 49459520 41 TCCCCCCGAGAGGTCTTTTTCCGAGTGGCAGCTGACATGTT TCCCCCCGAGAGGTCTTTTTCTGAGTGGCAGCTGACATGTT < 41bp 0.593962748710085 0.806473483574249 0.90903807 0.83895844 prediction 0.42502146972833 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49459500 chr19:49459501 stopgain 1.000 1 22 hm5C_associated_SNPs_123370 0 0 1 7 49459499 49459521 mRNA hsa-miR-543 BAX miRanda miRanda
9518 chrX 23957552 23957552 1 + C A rs753135175 23957551 + 23957531 23957571 41 AACAGTTAATTGACAGAAAACCAAAGTTGTTTAACAATCTG AACAGTTAATTGACAGAAAACAAAAGTTGTTTAACAATCTG < 41bp 0.591309581520411 0.80362163888729 0.13446823 0.19117892 prediction 0.424624114733757 Functional Gain - CXorf58 ENSG00000165182 UTR3 Human protein_coding chrX:23957551 chrX:23957552 . . 0 22 hm5C_associated_SNPs_123476 0 0 0 6 23957544 23957565 mRNA hsa-miR-30a CXorf58 miRanda miRanda
9519 chrX 23957552 23957552 1 + C A rs753135175 23957551 + 23957531 23957571 41 AACAGTTAATTGACAGAAAACCAAAGTTGTTTAACAATCTG AACAGTTAATTGACAGAAAACAAAAGTTGTTTAACAATCTG < 41bp 0.591309581520411 0.80362163888729 0.13446823 0.19117892 prediction 0.424624114733757 Functional Gain - CXorf58 ENSG00000165182 UTR3 Human protein_coding chrX:23957551 chrX:23957552 . . 0 22 hm5C_associated_SNPs_123476 0 0 0 6 23957543 23957565 mRNA hsa-miR-30c CXorf58 miRanda miRanda
9520 chrX 23957552 23957552 1 + C A rs753135175 23957551 + 23957531 23957571 41 AACAGTTAATTGACAGAAAACCAAAGTTGTTTAACAATCTG AACAGTTAATTGACAGAAAACAAAAGTTGTTTAACAATCTG < 41bp 0.591309581520411 0.80362163888729 0.13446823 0.19117892 prediction 0.424624114733757 Functional Gain - CXorf58 ENSG00000165182 UTR3 Human protein_coding chrX:23957551 chrX:23957552 . . 0 22 hm5C_associated_SNPs_123476 0 0 0 6 23957544 23957565 mRNA hsa-miR-30d CXorf58 miRanda miRanda
9521 chrX 23957552 23957552 1 + C A rs753135175 23957551 + 23957531 23957571 41 AACAGTTAATTGACAGAAAACCAAAGTTGTTTAACAATCTG AACAGTTAATTGACAGAAAACAAAAGTTGTTTAACAATCTG < 41bp 0.591309581520411 0.80362163888729 0.13446823 0.19117892 prediction 0.424624114733757 Functional Gain - CXorf58 ENSG00000165182 UTR3 Human protein_coding chrX:23957551 chrX:23957552 . . 0 22 hm5C_associated_SNPs_123476 0 0 0 6 23957544 23957565 mRNA hsa-miR-30b CXorf58 miRanda miRanda
9522 chrX 23957552 23957552 1 + C A rs753135175 23957551 + 23957531 23957571 41 AACAGTTAATTGACAGAAAACCAAAGTTGTTTAACAATCTG AACAGTTAATTGACAGAAAACAAAAGTTGTTTAACAATCTG < 41bp 0.591309581520411 0.80362163888729 0.13446823 0.19117892 prediction 0.424624114733757 Functional Gain - CXorf58 ENSG00000165182 UTR3 Human protein_coding chrX:23957551 chrX:23957552 . . 0 22 hm5C_associated_SNPs_123476 0 0 0 6 23957535 23957557 mRNA hsa-miR-9 CXorf58 miRanda miRanda
9523 chrX 23957552 23957552 1 + C A rs753135175 23957551 + 23957531 23957571 41 AACAGTTAATTGACAGAAAACCAAAGTTGTTTAACAATCTG AACAGTTAATTGACAGAAAACAAAAGTTGTTTAACAATCTG < 41bp 0.591309581520411 0.80362163888729 0.13446823 0.19117892 prediction 0.424624114733757 Functional Gain - CXorf58 ENSG00000165182 UTR3 Human protein_coding chrX:23957551 chrX:23957552 . . 0 22 hm5C_associated_SNPs_123476 0 0 0 6 23957544 23957565 mRNA hsa-miR-30e CXorf58 miRanda miRanda
9524 chr16 50745233 50745233 1 + C T rs1078327 50745232 + 50745212 50745252 41 GGGGTGGCGGACCGCCTCATCCGCCTGCTCCAAGAGACCTC GGGGTGGCGGACCGCCTCATCTGCCTGCTCCAAGAGACCTC < 41bp 0.471337593559676 0.712269492792285 0.09481442 0.123004675 prediction 0.42453898558457 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50745232 chr16:50745233 nonsynonymous SNV 0.733 0 22 hm5C_associated_SNPs_123495 2 0 0 1 50745216 50745241 mRNA hsa-miR-503 NOD2 miRanda miRanda
9525 chr12 110355431 110355431 1 + C G rs117176903 110355430 + 110355410 110355450 41 ATGAGTCTCAGAACCACAGACCGGCCAGAAATCTCTCCCAC ATGAGTCTCAGAACCACAGACGGGCCAGAAATCTCTCCCAC < 41bp 0.423563447917866 0.71226533532139 0.100040376 0.38158482 prediction 0.424530670642781 Functional Gain - TCHP ENSG00000139437 UTR3 Human protein_coding chr12:110355430 chr12:110355431 . . 0 22 hm5C_associated_SNPs_123499 0 0 1 1 110355424 110355448 mRNA hsa-miR-185 TCHP miRanda miRanda
9526 chr8 110566962 110566962 1 + A G LIHC 110566959 + 110566939 110566979 41 GTTGATCAATTAAATTTAGACAGATGTTGAAGAGTGGACTT GTTGATCAATTAAATTTAGACAGGTGTTGAAGAGTGGACTT < 41bp 0.556298245423516 0.768431192401147 0.26094738 0.38791603 prediction 0.424265893955262 Functional Gain - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110566959 chr8:110566962 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_123556 0 0 1 2 110566958 110566967 mRNA hsa-miR-141 EBAG9 miRanda miRanda
9527 chr8 110566962 110566962 1 + A G LIHC 110566959 + 110566939 110566979 41 GTTGATCAATTAAATTTAGACAGATGTTGAAGAGTGGACTT GTTGATCAATTAAATTTAGACAGGTGTTGAAGAGTGGACTT < 41bp 0.556298245423516 0.768431192401147 0.26094738 0.38791603 prediction 0.424265893955262 Functional Gain - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110566959 chr8:110566962 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_123556 0 0 1 2 110566958 110566967 mRNA hsa-miR-200a EBAG9 miRanda miRanda
9528 chr5 68715520 68715520 1 + T C UCEC 68715517 + 68715497 68715537 41 GGACCCCGAATGGGATAAGCCGGTGTCTGATATCAGGTACA GGACCCCGAATGGGATAAGCCGGCGTCTGATATCAGGTACA < 41bp 0.521617101998459 0.73372956638167 0.50484914 0.7559147 prediction 0.424224928766423 Functional Gain - MARVELD2 ENSG00000152939 CDS Human protein_coding chr5:68715517 chr5:68715520 nonsynonymous SNV 0.114 0 24 hm5C_associated_SNPs_123566 0 0 0 1 68715507 68715529 mRNA hsa-miR-361-5p MARVELD2 miRanda miRanda
9529 chr19 10753986 10753986 1 + C G rs151043533 10753982 + 10753962 10754002 41 CCTGGAGAGGAATGACGGCTCGGCCGAGAGGCCTTACTTCA CCTGGAGAGGAATGACGGCTCGGCGGAGAGGCCTTACTTCA < 41bp 0.65475284563969 0.866800991101461 0.27807856 0.81618726 prediction 0.424096290923542 Functional Gain - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10753982 chr19:10753986 synonymous SNV . 0 25 hm5C_associated_SNPs_123605 0 0 0 1 10753986 10754011 mRNA hsa-miR-7 SLC44A2 miRanda miRanda
9530 chr14 24113663 24113663 1 + A G BRCA 24113660 + 24113640 24113680 41 GCAAGACAGCGCTGCTGGGTCTCACTAGAACACTGGCATTG GCAAGACAGCGCTGCTGGGTCTCGCTAGAACACTGGCATTG < 41bp 0.462177251741736 0.712003940571484 0.021115422 0.052726835 prediction 0.424007881142968 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113660 chr14:24113663 nonsynonymous SNV 0.053 1 24 hm5C_associated_SNPs_123628 0 0 1 3 24113653 24113676 mRNA hsa-miR-199a-5p DHRS2 miRanda miRanda
9531 chr14 24113663 24113663 1 + A G BRCA 24113660 + 24113640 24113680 41 GCAAGACAGCGCTGCTGGGTCTCACTAGAACACTGGCATTG GCAAGACAGCGCTGCTGGGTCTCGCTAGAACACTGGCATTG < 41bp 0.462177251741736 0.712003940571484 0.021115422 0.052726835 prediction 0.424007881142968 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113660 chr14:24113663 nonsynonymous SNV 0.053 1 24 hm5C_associated_SNPs_123628 0 0 1 3 24113653 24113676 mRNA hsa-miR-199b-5p DHRS2 miRanda miRanda
9532 chr14 24113663 24113663 1 + A G BRCA 24113660 + 24113640 24113680 41 GCAAGACAGCGCTGCTGGGTCTCACTAGAACACTGGCATTG GCAAGACAGCGCTGCTGGGTCTCGCTAGAACACTGGCATTG < 41bp 0.462177251741736 0.712003940571484 0.021115422 0.052726835 prediction 0.424007881142968 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113660 chr14:24113663 nonsynonymous SNV 0.053 1 24 hm5C_associated_SNPs_123628 0 0 1 3 24113645 24113666 mRNA hsa-miR-411 DHRS2 miRanda miRanda
9533 chr18 61654685 61654685 1 + C T rs147258588 61654684 + 61654664 61654704 41 GCCATTGAGAATAACTGAGGCCGCAGATGCATGAAATTTGG GCCATTGAGAATAACTGAGGCTGCAGATGCATGAAATTTGG < 41bp 0.521012584475197 0.733002914335244 0.12144059 0.10970977 prediction 0.423980659720094 Functional Gain - SERPINB8 ENSG00000166401 UTR3 Human protein_coding chr18:61654684 chr18:61654685 . . 0 22 hm5C_associated_SNPs_123641 0 0 0 2 61654675 61654698 mRNA hsa-miR-433 SERPINB8 miRanda miRanda
9534 chr18 61654685 61654685 1 + C T rs147258588 61654684 + 61654664 61654704 41 GCCATTGAGAATAACTGAGGCCGCAGATGCATGAAATTTGG GCCATTGAGAATAACTGAGGCTGCAGATGCATGAAATTTGG < 41bp 0.521012584475197 0.733002914335244 0.12144059 0.10970977 prediction 0.423980659720094 Functional Gain - SERPINB8 ENSG00000166401 UTR3 Human protein_coding chr18:61654684 chr18:61654685 . . 0 22 hm5C_associated_SNPs_123641 0 0 0 2 61654677 61654699 mRNA hsa-miR-544 SERPINB8 miRanda miRanda
9535 chr22 20378905 20378905 1 + C T rs2930761 20378904 + 20378884 20378924 41 AGCTCTTCTACGGAGGGGAACCGCAGAGCCAGAAGAGCACG AGCTCTTCTACGGAGGGGAACTGCAGAGCCAGAAGAGCACG < 41bp 0.598407983399114 0.810380036379128 0.38442263 0.65187 prediction 0.423944105960029 Functional Gain - TMEM191B ENSG00000206176 ncRNA_exonic Human other chr22:20378904 chr22:20378905 . 0.016 0 22 hm5C_associated_SNPs_123650 0 0 1 1 20378894 20378916 mRNA hsa-miR-149 TMEM191C miRanda miRanda
9536 chr10 99509340 99509340 1 + C A GBM 99509339 + 99509319 99509359 41 CTGGGGAATGTGGAGTTCTTCCGAGGTAAGCCCTGAAGGGC CTGGGGAATGTGGAGTTCTTCAGAGGTAAGCCCTGAAGGGC < 41bp 0.621857805690139 0.833718062444453 0.9298134 0.9434972 prediction 0.423720513508629 Functional Gain - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99509339 chr10:99509340 synonymous SNV . 0 22 hm5C_associated_SNPs_123705 0 0 1 1 99509340 99509343 mRNA hsa-miR-486-5p ZFYVE27 miRanda miRanda
9537 chr19 36205630 36205630 1 + C A LUAD 36205629 + 36205609 36205649 41 ACTCTGTGATACTCTGATCACCGTAGGGAGCCAGGAGTTCC ACTCTGTGATACTCTGATCACAGTAGGGAGCCAGGAGTTCC < 41bp 0.627992441638117 0.839824052837241 0.33781144 0.3490461 prediction 0.423663222398247 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205629 chr19:36205630 synonymous SNV . 0 22 hm5C_associated_SNPs_123719 0 0 0 2 36205622 36205643 mRNA hsa-miR-149 ZBTB32 miRanda miRanda
9538 chr19 36205630 36205630 1 + C A LUAD 36205629 + 36205609 36205649 41 ACTCTGTGATACTCTGATCACCGTAGGGAGCCAGGAGTTCC ACTCTGTGATACTCTGATCACAGTAGGGAGCCAGGAGTTCC < 41bp 0.627992441638117 0.839824052837241 0.33781144 0.3490461 prediction 0.423663222398247 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205629 chr19:36205630 synonymous SNV . 0 22 hm5C_associated_SNPs_123719 0 0 0 2 36205609 36205630 mRNA hsa-miR-542-3p ZBTB32 miRanda miRanda
9539 chr5 110098249 110098249 1 + C A rs147559723 110098248 + 110098228 110098268 41 ATCCTTGTCCATATCCAAACCCAGTGTTTCAGTGCTAGCAA ATCCTTGTCCATATCCAAACCAAGTGTTTCAGTGCTAGCAA < 41bp 0.474343518612972 0.71176135497763 0.016854197 0.054659754 prediction 0.423522709955259 Functional Gain - SLC25A46 ENSG00000164209 UTR3 Human protein_coding chr5:110098248 chr5:110098249 . . 0 22 hm5C_associated_SNPs_123758 0 0 1 2 110098232 110098256 mRNA hsa-miR-141 SLC25A46 miRanda miRanda
9540 chr5 110098249 110098249 1 + C A rs147559723 110098248 + 110098228 110098268 41 ATCCTTGTCCATATCCAAACCCAGTGTTTCAGTGCTAGCAA ATCCTTGTCCATATCCAAACCAAGTGTTTCAGTGCTAGCAA < 41bp 0.474343518612972 0.71176135497763 0.016854197 0.054659754 prediction 0.423522709955259 Functional Gain - SLC25A46 ENSG00000164209 UTR3 Human protein_coding chr5:110098248 chr5:110098249 . . 0 22 hm5C_associated_SNPs_123758 0 0 1 2 110098232 110098256 mRNA hsa-miR-200a SLC25A46 miRanda miRanda
9541 chr1 31837089 31837089 1 + T C rs12139997 31837087 + 31837067 31837107 41 GAGAGTAAGAAACCAGGAGCCTTGTGCCTTGAGACTCCTGG GAGAGTAAGAAACCAGGAGCCTCGTGCCTTGAGACTCCTGG < 41bp 0.457591311854936 0.711567361835021 0.22891766 0.20754516 prediction 0.423134723670042 Functional Gain - ZCCHC17 ENSG00000121766 UTR3 Human protein_coding chr1:31837087 chr1:31837089 . . 0 23 hm5C_associated_SNPs_123844 0 0 1 2 31837078 31837097 mRNA hsa-miR-124 ZCCHC17 miRanda miRanda
9542 chr1 31837089 31837089 1 + T C rs12139997 31837087 + 31837067 31837107 41 GAGAGTAAGAAACCAGGAGCCTTGTGCCTTGAGACTCCTGG GAGAGTAAGAAACCAGGAGCCTCGTGCCTTGAGACTCCTGG < 41bp 0.457591311854936 0.711567361835021 0.22891766 0.20754516 prediction 0.423134723670042 Functional Gain - ZCCHC17 ENSG00000121766 UTR3 Human protein_coding chr1:31837087 chr1:31837089 . . 0 23 hm5C_associated_SNPs_123844 0 0 1 2 31837075 31837097 mRNA hsa-miR-506 ZCCHC17 miRanda miRanda
9543 chr15 83788350 83788350 1 + C T rs529704524 83788349 + 83788329 83788369 41 GGGTGAACCGTATCTGAACACCGCATATGGGCACATGATCT GGGTGAACCGTATCTGAACACTGCATATGGGCACATGATCT < 41bp 0.612412805899928 0.82395523554432 0.18101618 0.23851287 prediction 0.423084859288784 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83788349 chr15:83788350 synonymous SNV . 0 22 hm5C_associated_SNPs_123858 0 0 1 1 83788344 83788365 mRNA hsa-miR-455-5p TM6SF1 miRanda miRanda
9544 chr13 70681538 70681538 1 + T A LUAD 70681534 + 70681514 70681554 41 CCCTTGCTGCAGCCTCGTGGCAACTGGAAGCAGGGTGCCAT CCCTTGCTGCAGCCTCGTGGCAACAGGAAGCAGGGTGCCAT < 41bp 0.675653918134125 0.887131428200609 0.28383535 0.35675338 prediction 0.422955020132967 Functional Gain - KLHL1 ENSG00000150361 CDS Human protein_coding chr13:70681534 chr13:70681538 synonymous SNV . 0 25 hm5C_associated_SNPs_123886 0 0 0 1 70681534 70681555 mRNA hsa-miR-183 ATXN8OS miRanda miRanda
9545 chr19 10396651 10396651 1 + T C rs142396903 10396649 + 10396629 10396669 41 CAAATGGGGCTGGGACTTCTCATTGGCCAACCTGCCTTTCC CAAATGGGGCTGGGACTTCTCACTGGCCAACCTGCCTTTCC < 41bp 0.48879772922014 0.711467929371084 0.31321082 0.31418562 prediction 0.422935858742169 Functional Gain - ICAM1 ENSG00000267607 ncRNA_exonic Human antisense chr19:10396649 chr19:10396651 . . 0 23 hm5C_associated_SNPs_123889 0 0 1 1 10396637 10396659 mRNA hsa-miR-182 ICAM1 miRanda miRanda
9546 chr1 171766554 171766554 1 + T C rs140637743 171766552 + 171766532 171766572 41 GACCTGGCCCCATGGCTTTGCATGTTAGAGACCTGGCAGAC GACCTGGCCCCATGGCTTTGCACGTTAGAGACCTGGCAGAC < 41bp 0.528435214237357 0.739890045491451 0.13396335 0.2365615 prediction 0.422909662508187 Functional Gain - METTL13 ENSG00000010165 UTR3 Human protein_coding chr1:171766552 chr1:171766554 . . 0 23 hm5C_associated_SNPs_123896 0 0 1 1 171766551 171766573 mRNA hsa-miR-346 METTL13 miRanda miRanda
9547 chr17 8193136 8193136 1 + A G LUAD 8193133 + 8193113 8193153 41 CTGTTCCCCCACCCCAAGCCCTGACAACAGGTCATCTCTTG CTGTTCCCCCACCCCAAGCCCTGGCAACAGGTCATCTCTTG < 41bp 0.541768296061899 0.753185965287092 0.1272361 0.2749294 prediction 0.422835338450387 Functional Gain - RANGRF ENSG00000108961 CDS Human protein_coding chr17:8193133 chr17:8193136 stoploss 0.402 0 24 hm5C_associated_SNPs_123908 0 0 1 1 8193134 8193151 mRNA hsa-miR-143 RANGRF miRanda miRanda
9548 chr2 155711608 155711608 1 + T C UCEC 155711606 + 155711586 155711626 41 ACTTCAGAAAAAGCCTACAGCTTGGGAGACTTGCCCATGAA ACTTCAGAAAAAGCCTACAGCTCGGGAGACTTGCCCATGAA < 41bp 0.433571321433664 0.711102888325843 0.13322368 0.1558356 prediction 0.422205776651685 Functional Gain - KCNJ3 ENSG00000162989 CDS Human protein_coding chr2:155711606 chr2:155711608 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_124070 0 0 0 1 155711595 155711614 mRNA hsa-miR-150 KCNJ3 miRanda miRanda
9549 chr19 22785505 22785505 1 + T C UCEC 22785503 + 22785483 22785523 41 CTCTCTGGAGAGACAGACACCATCGGTGAGGCGGAGGCCAG CTCTCTGGAGAGACAGACACCACCGGTGAGGCGGAGGCCAG < 41bp 0.574140015415404 0.785211653328624 0.25731733 0.3115046 prediction 0.422143275826441 Functional Gain - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785503 chr19:22785505 . . 0 23 hm5C_associated_SNPs_124085 0 0 0 4 22785498 22785507 mRNA hsa-miR-34a LOC440518 miRanda miRanda
9550 chr19 22785505 22785505 1 + T C UCEC 22785503 + 22785483 22785523 41 CTCTCTGGAGAGACAGACACCATCGGTGAGGCGGAGGCCAG CTCTCTGGAGAGACAGACACCACCGGTGAGGCGGAGGCCAG < 41bp 0.574140015415404 0.785211653328624 0.25731733 0.3115046 prediction 0.422143275826441 Functional Gain - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785503 chr19:22785505 . . 0 23 hm5C_associated_SNPs_124085 0 0 0 4 22785501 22785507 mRNA hsa-miR-34c-5p LOC440518 miRanda miRanda
9551 chr19 22785505 22785505 1 + T C UCEC 22785503 + 22785483 22785523 41 CTCTCTGGAGAGACAGACACCATCGGTGAGGCGGAGGCCAG CTCTCTGGAGAGACAGACACCACCGGTGAGGCGGAGGCCAG < 41bp 0.574140015415404 0.785211653328624 0.25731733 0.3115046 prediction 0.422143275826441 Functional Gain - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785503 chr19:22785505 . . 0 23 hm5C_associated_SNPs_124085 0 0 0 4 22785501 22785507 mRNA hsa-miR-449a LOC440518 miRanda miRanda
9552 chr19 22785505 22785505 1 + T C UCEC 22785503 + 22785483 22785523 41 CTCTCTGGAGAGACAGACACCATCGGTGAGGCGGAGGCCAG CTCTCTGGAGAGACAGACACCACCGGTGAGGCGGAGGCCAG < 41bp 0.574140015415404 0.785211653328624 0.25731733 0.3115046 prediction 0.422143275826441 Functional Gain - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785503 chr19:22785505 . . 0 23 hm5C_associated_SNPs_124085 0 0 0 4 22785501 22785507 mRNA hsa-miR-449b LOC440518 miRanda miRanda
9553 chr3 38357085 38357085 1 + C T STAD 38357084 + 38357064 38357104 41 GACTCAAGTGGCCACGTTGTCCGGCCACAGAGCTGAAATCC GACTCAAGTGGCCACGTTGTCTGGCCACAGAGCTGAAATCC < 41bp 0.567552786958393 0.778598579398254 0.40513694 0.31385678 prediction 0.422091584879722 Functional Gain - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38357084 chr3:38357085 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_124094 0 0 0 1 38357081 38357105 mRNA hsa-miR-876-5p SLC22A14 miRanda miRanda
9554 chrX 151908922 151908922 1 + C A rs112731911 151908921 + 151908901 151908941 41 CCAACAACCACCCATCAACACCAAAGAGGCGAGGAAGGGGA CCAACAACCACCCATCAACACAAAAGAGGCGAGGAAGGGGA < 41bp 0.633244493126431 0.844272731177978 0.038795054 0.13164532 prediction 0.422056476103093 Functional Gain - CSAG1 ENSG00000198930 CDS Human protein_coding chrX:151908921 chrX:151908922 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_124102 0 0 1 1 151908904 151908927 mRNA hsa-miR-9 CSAG1 miRanda miRanda
9555 chr11 7437333 7437333 1 + C A HNSC 7437329 + 7437309 7437349 41 TGCTATCTTCCAACGGCTGGCAGGCTGACCATTACCATTAT TGCTATCTTCCAACGGCTGGCAGGATGACCATTACCATTAT < 41bp 0.295891598376557 0.71100255522478 0.3084402 0.4675255 prediction 0.42200511044956 Functional Gain - SYT9 ENSG00000170743 CDS Human protein_coding chr11:7437329 chr11:7437333 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_124116 0 0 1 1 7437309 7437335 mRNA hsa-miR-22 SYT9 miRanda miRanda
9556 chr10 12871454 12871454 1 + C A rs534213669 12871453 + 12871433 12871473 41 AATTCTAATAAGAGGATCAGCCGGGTGCAATGACTCATGCC AATTCTAATAAGAGGATCAGCAGGGTGCAATGACTCATGCC < 41bp 0.484036737976082 0.710992224003221 0.77344096 0.8565985 prediction 0.421984448006442 Functional Gain - CAMK1D ENSG00000183049 UTR3 Human protein_coding chr10:12871453 chr10:12871454 . . 0 22 hm5C_associated_SNPs_124124 0 0 0 1 12871445 12871469 mRNA hsa-miR-496 CAMK1D miRanda miRanda
9557 chr3 38565753 38565753 1 + A G rs146039478 38565750 + 38565730 38565770 41 CATGGAAAACTTGAAGAATGCAGAGATTGAACCAGATGATT CATGGAAAACTTGAAGAATGCAGGGATTGAACCAGATGATT < 41bp 0.553616634277525 0.764563639531267 0.34596664 0.55946004 prediction 0.421894010507484 Functional Gain - EXOG ENSG00000157036 CDS Human protein_coding chr3:38565750 chr3:38565753 nonsynonymous SNV 0.295 0 24 hm5C_associated_SNPs_124138 0 0 1 3 38565732 38565754 mRNA hsa-miR-217 EXOG miRanda miRanda
9558 chr3 38565753 38565753 1 + A G rs146039478 38565750 + 38565730 38565770 41 CATGGAAAACTTGAAGAATGCAGAGATTGAACCAGATGATT CATGGAAAACTTGAAGAATGCAGGGATTGAACCAGATGATT < 41bp 0.553616634277525 0.764563639531267 0.34596664 0.55946004 prediction 0.421894010507484 Functional Gain - EXOG ENSG00000157036 CDS Human protein_coding chr3:38565750 chr3:38565753 nonsynonymous SNV 0.295 0 24 hm5C_associated_SNPs_124138 0 0 1 3 38565736 38565755 mRNA hsa-miR-544 EXOG miRanda miRanda
9559 chr3 38565753 38565753 1 + A G rs146039478 38565750 + 38565730 38565770 41 CATGGAAAACTTGAAGAATGCAGAGATTGAACCAGATGATT CATGGAAAACTTGAAGAATGCAGGGATTGAACCAGATGATT < 41bp 0.553616634277525 0.764563639531267 0.34596664 0.55946004 prediction 0.421894010507484 Functional Gain - EXOG ENSG00000157036 CDS Human protein_coding chr3:38565750 chr3:38565753 nonsynonymous SNV 0.295 0 24 hm5C_associated_SNPs_124138 0 0 1 3 38565737 38565758 mRNA hsa-miR-216b EXOG miRanda miRanda
9560 chr12 4662210 4662210 1 + T C rs17850028 4662207 + 4662187 4662227 41 GAGGATAATGACGAAGACTTCTCTATGAGAAAAAGTAAAGT GAGGATAATGACGAAGACTTCTCCATGAGAAAAAGTAAAGT < 41bp 0.474864401869864 0.71092162804025 0.89450324 0.9392897 prediction 0.421843256080499 Functional Gain - RAD51AP1 ENSG00000111247 CDS Human protein_coding chr12:4662207 chr12:4662210 synonymous SNV . 0 24 hm5C_associated_SNPs_124152 0 0 1 2 4662195 4662215 mRNA hsa-miR-376a RAD51AP1 miRanda miRanda
9561 chr12 4662210 4662210 1 + T C rs17850028 4662207 + 4662187 4662227 41 GAGGATAATGACGAAGACTTCTCTATGAGAAAAAGTAAAGT GAGGATAATGACGAAGACTTCTCCATGAGAAAAAGTAAAGT < 41bp 0.474864401869864 0.71092162804025 0.89450324 0.9392897 prediction 0.421843256080499 Functional Gain - RAD51AP1 ENSG00000111247 CDS Human protein_coding chr12:4662207 chr12:4662210 synonymous SNV . 0 24 hm5C_associated_SNPs_124152 0 0 1 2 4662194 4662215 mRNA hsa-miR-376b RAD51AP1 miRanda miRanda
9562 chr10 12292479 12292479 1 + C A rs138917849 12292478 + 12292458 12292498 41 TTTATATTCATGTACATTCACCTGGGGAAAAAAACGGAGGG TTTATATTCATGTACATTCACATGGGGAAAAAAACGGAGGG < 41bp 0.61009707134904 0.821014098106698 0.33081824 0.4877069 prediction 0.421834053515317 Functional Gain - CDC123 ENSG00000151465 UTR3 Human protein_coding chr10:12292478 chr10:12292479 . . 0 22 hm5C_associated_SNPs_124154 0 0 1 1 12292460 12292482 mRNA hsa-miR-125a-3p CDC123 miRanda miRanda
9563 chr11 125770338 125770338 1 + A G rs554176314 125770335 + 125770315 125770355 41 ATTGGTATCAGATGATACTTCCAAATTGCCACTCAAATCCA ATTGGTATCAGATGATACTTCCAGATTGCCACTCAAATCCA < 41bp 0.56218600105803 0.77308650609555 0.24121562 0.36999315 prediction 0.421801010075041 Functional Gain - HYLS1 ENSG00000198331 UTR3 Human protein_coding chr11:125770335 chr11:125770338 . . 0 24 hm5C_associated_SNPs_124163 0 0 0 1 125770320 125770348 mRNA hsa-miR-301a HYLS1 miRanda miRanda
9564 chr10 114925435 114925435 1 + C T UCEC 114925434 + 114925414 114925454 41 AACCTGCTAGGCTCCCCTCCCCGAGACGCCAAGTCACAGAC AACCTGCTAGGCTCCCCTCCCTGAGACGCCAAGTCACAGAC < 41bp 0.550806026967324 0.761655855723474 0.3257962 0.18656856 prediction 0.421699657512301 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114925434 chr10:114925435 stopgain 0.998 0 22 hm5C_associated_SNPs_124187 0 0 1 2 114925432 114925453 mRNA hsa-miR-378 TCF7L2 miRanda miRanda
9565 chr10 114925435 114925435 1 + C T UCEC 114925434 + 114925414 114925454 41 AACCTGCTAGGCTCCCCTCCCCGAGACGCCAAGTCACAGAC AACCTGCTAGGCTCCCCTCCCTGAGACGCCAAGTCACAGAC < 41bp 0.550806026967324 0.761655855723474 0.3257962 0.18656856 prediction 0.421699657512301 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114925434 chr10:114925435 stopgain 0.998 0 22 hm5C_associated_SNPs_124187 0 0 1 2 114925431 114925453 mRNA hsa-miR-422a TCF7L2 miRanda miRanda
9566 chr7 128355458 128355458 1 + A G rs3807127 128355455 + 128355435 128355475 41 CCAGGAGGGGAGACAGAGATCCCAGGACAAATGTGCAGCAG CCAGGAGGGGAGACAGAGATCCCGGGACAAATGTGCAGCAG < 41bp 0.524230967142179 0.735005497052341 0.88512576 0.8868013 prediction 0.421549059820325 Functional Gain - FAM71F1 ENSG00000135248 UTR5 Human protein_coding chr7:128355455 chr7:128355458 . . 0 24 hm5C_associated_SNPs_124229 0 0 0 1 128355455 128355477 mRNA hsa-miR-370 FAM71F1 miRanda miRanda
9567 chr3 130992326 130992326 1 + A G rs566314355 130992323 + 130992303 130992343 41 GCTGTGCATTGATTTTCAGACACAAAGACCATCACCACCAT GCTGTGCATTGATTTTCAGACACGAAGACCATCACCACCAT < 41bp 0.491047957974607 0.710620574472759 0.032295614 0.048967093 prediction 0.421241148945519 Functional Gain - NEK11 ENSG00000114670 CDS Human protein_coding chr3:130992323 chr3:130992326 synonymous SNV . 0 24 hm5C_associated_SNPs_124297 0 0 0 1 130992322 130992328 mRNA hsa-miR-599 NEK11 miRanda miRanda
9568 chr11 71507205 71507205 1 + C T rs57679800 71507204 + 71507184 71507224 41 GATGTGCCAGCTGTTCACCACCGAGCTATGTGAGCCCCCAC GATGTGCCAGCTGTTCACCACTGAGCTATGTGAGCCCCCAC < 41bp 0.47430286320625 0.710600970169794 0.13469169 0.07137796 prediction 0.421201940339588 Functional Gain - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71507204 chr11:71507205 nonsynonymous SNV 0.016 0 22 hm5C_associated_SNPs_124311 0 0 0 1 71507198 71507212 mRNA hsa-miR-338-3p FAM86C miRanda miRanda
9569 chrX 37641386 37641386 1 + C T HNSC 37641385 + 37641365 37641405 41 TTCCTCTTTGTCTGGTATTACCGGGTTTATGATATTCCACC TTCCTCTTTGTCTGGTATTACTGGGTTTATGATATTCCACC < 41bp 0.476459261096102 0.710366228441598 0.9042816 0.7893231 prediction 0.420732456883195 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37641385 chrX:37641386 nonsynonymous SNV 0.043 1 22 hm5C_associated_SNPs_124433 0 0 0 1 37641368 37641391 mRNA hsa-miR-99b CYBB miRanda miRanda
9570 chr3 160152299 160152299 1 + C A rs13403 160152298 + 160152278 160152318 41 CAACTTTATGATAGGTTTATCCGGGTACTAAATGCATTTCA CAACTTTATGATAGGTTTATCAGGGTACTAAATGCATTTCA < 41bp 0.476423967757126 0.71035503542969 0.8958057 0.9141172 prediction 0.420710070859381 Functional Gain - SMC4 ENSG00000113810;ENSG00000213186 UTR3 Human other chr3:160152298 chr3:160152299 . . 0 22 hm5C_associated_SNPs_124440 0 0 1 1 160152296 160152319 mRNA hsa-miR-203 SMC4 miRanda miRanda
9571 chr8 62289226 62289226 1 + C A LUSC 62289225 + 62289205 62289245 41 TGGAAGTCCTAATCGAAGATCCGGAGCTTCAGATAAATGGC TGGAAGTCCTAATCGAAGATCAGGAGCTTCAGATAAATGGC < 41bp 0.449408627737101 0.710295118021729 0.08921775 0.6369587 prediction 0.420590236043459 Functional Gain - CLVS1 ENSG00000177182 CDS Human protein_coding chr8:62289225 chr8:62289226 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_124467 0 0 0 1 62289213 62289237 mRNA hsa-miR-149 CLVS1 miRanda miRanda
9572 chr2 62363131 62363131 1 + C T rs183271251 62363130 + 62363110 62363150 41 CCAAGGTGTCCATGATCCCTCCCCACTGACCTTTTCTAAGA CCAAGGTGTCCATGATCCCTCTCCACTGACCTTTTCTAAGA < 41bp 0.556657389171098 0.766921161864431 0.0032020211 0.9201305 prediction 0.420527545386666 Functional Gain - COMMD1 ENSG00000229839 ncRNA_intronic Human antisense chr2:62363130 chr2:62363131 . . 0 22 hm5C_associated_SNPs_124480 0 0 1 1 62363115 62363136 mRNA hsa-miR-491-5p COMMD1 miRanda miRanda
9573 chr8 25230091 25230091 1 + C T DLBC 25230090 + 25230070 25230110 41 TCCAGGCTCCTAGAACATTGCCGGAAACACAAATACCTCTC TCCAGGCTCCTAGAACATTGCTGGAAACACAAATACCTCTC < 41bp 0.570480431897004 0.780719027854292 0.83984184 0.30167675 prediction 0.420477191914576 Functional Gain - DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25230090 chr8:25230091 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_124493 0 0 1 1 25230090 25230109 mRNA hsa-miR-202 DOCK5 miRanda miRanda
9574 chr16 30096328 30096328 1 + C T SKCM 30096327 + 30096307 30096347 41 TCATCATCTTTGAGGCTGCTCCCCAAGAGACACGGGGCATC TCATCATCTTTGAGGCTGCTCTCCAAGAGACACGGGGCATC < 41bp 0.631093675724508 0.841229145924288 0.19797248 0.95645523 prediction 0.420270940399561 Functional Gain - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096327 chr16:30096328 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_124539 0 0 1 1 30096318 30096341 mRNA hsa-miR-187 PPP4C miRanda miRanda
9575 chr11 66299445 66299445 1 + A G rs150553044 66299442 + 66299422 66299462 41 GTGCTGGTGCTTCGAGAAGGCCAAAGTGCACCCCTGCTGAG GTGCTGGTGCTTCGAGAAGGCCAGAGTGCACCCCTGCTGAG < 41bp 0.589480772422446 0.799615967359866 0.57232374 0.93046296 prediction 0.420270389874839 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66299442 chr11:66299445 synonymous SNV . 0 24 hm5C_associated_SNPs_124540 1 0 0 1 66299440 66299461 mRNA hsa-miR-214 BBS1 miRanda miRanda
9576 chr20 61299185 61299185 1 + T G LGG 61299181 + 61299161 61299201 41 GAACACTACAGCCCTGTGTGCGGCTCGGACGGCCTCATGTA GAACACTACAGCCCTGTGTGCGGCGCGGACGGCCTCATGTA < 41bp 0.52559408023507 0.73567527600659 0.31025684 0.7215914 prediction 0.420162391543041 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61299181 chr20:61299185 nonsynonymous SNV 0.036 0 25 hm5C_associated_SNPs_124563 0 0 1 1 61299168 61299189 mRNA hsa-miR-615-3p SLCO4A1 miRanda miRanda
9577 chr20 44354312 44354312 1 + C A rs80206193 44354311 + 44354291 44354331 41 GAAGTTGTCTGCTGCACCATCCGAAATAAAGACACAAGAAA GAAGTTGTCTGCTGCACCATCAGAAATAAAGACACAAGAAA < 41bp 0.57685580478819 0.786852301909571 0.13980815 0.374835 prediction 0.419992994242762 Functional Gain - SPINT4 ENSG00000149651 UTR3 Human protein_coding chr20:44354311 chr20:44354312 . . 0 22 hm5C_associated_SNPs_124607 0 0 0 1 44354311 44354328 mRNA hsa-miR-599 SPINT4 miRanda miRanda
9578 chr4 42403561 42403561 1 + T C rs55934419 42403559 + 42403539 42403579 41 GCAATTCTGAGAAAATTTCCCTTGTAACTGATCAGTGTCAT GCAATTCTGAGAAAATTTCCCTCGTAACTGATCAGTGTCAT < 41bp 0.446722408701104 0.709981788388573 0.074393064 0.09990394 prediction 0.419963576777147 Functional Gain - SHISA3 ENSG00000178343 UTR3 Human protein_coding chr4:42403559 chr4:42403561 . . 0 23 hm5C_associated_SNPs_124618 0 0 0 1 42403557 42403580 mRNA hsa-miR-425 SHISA3 miRanda miRanda
9579 chr10 114925669 114925669 1 + C T COAD 114925668 + 114925648 114925688 41 TCGACTTCTTCCTTACATTCCCACAGCTCCCTGGCCGGGAC TCGACTTCTTCCTTACATTCCTACAGCTCCCTGGCCGGGAC < 41bp 0.573280223229677 0.783201680191211 0.16130546 0.12123451 prediction 0.419842913923068 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114925668 chr10:114925669 nonsynonymous SNV 0.957 5 22 hm5C_associated_SNPs_124652 0 0 1 3 114925649 114925669 mRNA hsa-miR-1 TCF7L2 miRanda miRanda
9580 chr10 114925669 114925669 1 + C T COAD 114925668 + 114925648 114925688 41 TCGACTTCTTCCTTACATTCCCACAGCTCCCTGGCCGGGAC TCGACTTCTTCCTTACATTCCTACAGCTCCCTGGCCGGGAC < 41bp 0.573280223229677 0.783201680191211 0.16130546 0.12123451 prediction 0.419842913923068 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114925668 chr10:114925669 nonsynonymous SNV 0.957 5 22 hm5C_associated_SNPs_124652 0 0 1 3 114925648 114925669 mRNA hsa-miR-206 TCF7L2 miRanda miRanda
9581 chr10 114925669 114925669 1 + C T COAD 114925668 + 114925648 114925688 41 TCGACTTCTTCCTTACATTCCCACAGCTCCCTGGCCGGGAC TCGACTTCTTCCTTACATTCCTACAGCTCCCTGGCCGGGAC < 41bp 0.573280223229677 0.783201680191211 0.16130546 0.12123451 prediction 0.419842913923068 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114925668 chr10:114925669 nonsynonymous SNV 0.957 5 22 hm5C_associated_SNPs_124652 0 0 1 3 114925650 114925669 mRNA hsa-miR-613 TCF7L2 miRanda miRanda
9582 chr4 158281155 158281155 1 + C A UCEC 158281154 + 158281134 158281174 41 GGTGGCTAGAGTGCGGAAGTCCAAAGGGAAATATGCCTACT GGTGGCTAGAGTGCGGAAGTCAAAAGGGAAATATGCCTACT < 41bp 0.60097066182492 0.810833233746106 0.38998246 0.5340106 prediction 0.419725143842373 Functional Gain - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158281154 chr4:158281155 synonymous SNV . 0 22 hm5C_associated_SNPs_124682 0 0 0 2 158281141 158281163 mRNA hsa-miR-204 GRIA2 miRanda miRanda
9583 chr4 158281155 158281155 1 + C A UCEC 158281154 + 158281134 158281174 41 GGTGGCTAGAGTGCGGAAGTCCAAAGGGAAATATGCCTACT GGTGGCTAGAGTGCGGAAGTCAAAAGGGAAATATGCCTACT < 41bp 0.60097066182492 0.810833233746106 0.38998246 0.5340106 prediction 0.419725143842373 Functional Gain - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158281154 chr4:158281155 synonymous SNV . 0 22 hm5C_associated_SNPs_124682 0 0 0 2 158281142 158281163 mRNA hsa-miR-211 GRIA2 miRanda miRanda
9584 chr14 105945933 105945933 1 + C T UCEC 105945932 + 105945912 105945952 41 TCCCTCCACAGGAGTGAACACCGGTGCGGTGGGCAGCTACA TCCCTCCACAGGAGTGAACACTGGTGCGGTGGGCAGCTACA < 41bp 0.496166749960277 0.709779569619555 0.82038724 0.549882 prediction 0.41955913923911 Functional Gain - CRIP2 ENSG00000182809 CDS Human protein_coding chr14:105945932 chr14:105945933 synonymous SNV . 0 22 hm5C_associated_SNPs_124724 0 0 0 1 105945929 105945950 mRNA hsa-miR-22 CRIP2 miRanda miRanda
9585 chr16 31500573 31500573 1 + C A COAD 31500569 + 31500549 31500589 41 GCTTTCCTCTGCGGCGTGCACTACCTCTACTTCGCCATTGT GCTTTCCTCTGCGGCGTGCACTACATCTACTTCGCCATTGT < 41bp 0.282696217381625 0.709749592462361 0.32349342 0.7703731 prediction 0.419499184924721 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500569 chr16:31500573 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_124751 0 0 0 11 31500553 31500576 mRNA hsa-let-7a SLC5A2 miRanda miRanda
9586 chr16 31500573 31500573 1 + C A COAD 31500569 + 31500549 31500589 41 GCTTTCCTCTGCGGCGTGCACTACCTCTACTTCGCCATTGT GCTTTCCTCTGCGGCGTGCACTACATCTACTTCGCCATTGT < 41bp 0.282696217381625 0.709749592462361 0.32349342 0.7703731 prediction 0.419499184924721 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500569 chr16:31500573 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_124751 0 0 0 11 31500553 31500576 mRNA hsa-let-7b SLC5A2 miRanda miRanda
9587 chr16 31500573 31500573 1 + C A COAD 31500569 + 31500549 31500589 41 GCTTTCCTCTGCGGCGTGCACTACCTCTACTTCGCCATTGT GCTTTCCTCTGCGGCGTGCACTACATCTACTTCGCCATTGT < 41bp 0.282696217381625 0.709749592462361 0.32349342 0.7703731 prediction 0.419499184924721 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500569 chr16:31500573 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_124751 0 0 0 11 31500553 31500576 mRNA hsa-let-7c SLC5A2 miRanda miRanda
9588 chr16 31500573 31500573 1 + C A COAD 31500569 + 31500549 31500589 41 GCTTTCCTCTGCGGCGTGCACTACCTCTACTTCGCCATTGT GCTTTCCTCTGCGGCGTGCACTACATCTACTTCGCCATTGT < 41bp 0.282696217381625 0.709749592462361 0.32349342 0.7703731 prediction 0.419499184924721 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500569 chr16:31500573 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_124751 0 0 0 11 31500553 31500576 mRNA hsa-let-7d SLC5A2 miRanda miRanda
9589 chr16 31500573 31500573 1 + C A COAD 31500569 + 31500549 31500589 41 GCTTTCCTCTGCGGCGTGCACTACCTCTACTTCGCCATTGT GCTTTCCTCTGCGGCGTGCACTACATCTACTTCGCCATTGT < 41bp 0.282696217381625 0.709749592462361 0.32349342 0.7703731 prediction 0.419499184924721 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500569 chr16:31500573 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_124751 0 0 0 11 31500553 31500576 mRNA hsa-let-7e SLC5A2 miRanda miRanda
9590 chr16 31500573 31500573 1 + C A COAD 31500569 + 31500549 31500589 41 GCTTTCCTCTGCGGCGTGCACTACCTCTACTTCGCCATTGT GCTTTCCTCTGCGGCGTGCACTACATCTACTTCGCCATTGT < 41bp 0.282696217381625 0.709749592462361 0.32349342 0.7703731 prediction 0.419499184924721 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500569 chr16:31500573 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_124751 0 0 0 11 31500553 31500576 mRNA hsa-let-7f SLC5A2 miRanda miRanda
9591 chr16 31500573 31500573 1 + C A COAD 31500569 + 31500549 31500589 41 GCTTTCCTCTGCGGCGTGCACTACCTCTACTTCGCCATTGT GCTTTCCTCTGCGGCGTGCACTACATCTACTTCGCCATTGT < 41bp 0.282696217381625 0.709749592462361 0.32349342 0.7703731 prediction 0.419499184924721 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500569 chr16:31500573 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_124751 0 0 0 11 31500553 31500576 mRNA hsa-miR-98 SLC5A2 miRanda miRanda
9592 chr16 31500573 31500573 1 + C A COAD 31500569 + 31500549 31500589 41 GCTTTCCTCTGCGGCGTGCACTACCTCTACTTCGCCATTGT GCTTTCCTCTGCGGCGTGCACTACATCTACTTCGCCATTGT < 41bp 0.282696217381625 0.709749592462361 0.32349342 0.7703731 prediction 0.419499184924721 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500569 chr16:31500573 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_124751 0 0 0 11 31500555 31500575 mRNA hsa-miR-196a SLC5A2 miRanda miRanda
9593 chr16 31500573 31500573 1 + C A COAD 31500569 + 31500549 31500589 41 GCTTTCCTCTGCGGCGTGCACTACCTCTACTTCGCCATTGT GCTTTCCTCTGCGGCGTGCACTACATCTACTTCGCCATTGT < 41bp 0.282696217381625 0.709749592462361 0.32349342 0.7703731 prediction 0.419499184924721 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500569 chr16:31500573 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_124751 0 0 0 11 31500553 31500576 mRNA hsa-let-7g SLC5A2 miRanda miRanda
9594 chr16 31500573 31500573 1 + C A COAD 31500569 + 31500549 31500589 41 GCTTTCCTCTGCGGCGTGCACTACCTCTACTTCGCCATTGT GCTTTCCTCTGCGGCGTGCACTACATCTACTTCGCCATTGT < 41bp 0.282696217381625 0.709749592462361 0.32349342 0.7703731 prediction 0.419499184924721 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500569 chr16:31500573 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_124751 0 0 0 11 31500555 31500576 mRNA hsa-let-7i SLC5A2 miRanda miRanda
9595 chr16 31500573 31500573 1 + C A COAD 31500569 + 31500549 31500589 41 GCTTTCCTCTGCGGCGTGCACTACCTCTACTTCGCCATTGT GCTTTCCTCTGCGGCGTGCACTACATCTACTTCGCCATTGT < 41bp 0.282696217381625 0.709749592462361 0.32349342 0.7703731 prediction 0.419499184924721 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500569 chr16:31500573 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_124751 0 0 0 11 31500555 31500575 mRNA hsa-miR-196b SLC5A2 miRanda miRanda
9596 chr17 19459147 19459147 1 + C A READ 19459143 + 19459123 19459163 41 TGCCTGCAGGACTGGGCCTCCTTCCTCCGCCTGGCCATCCC TGCCTGCAGGACTGGGCCTCCTTCATCCGCCTGGCCATCCC < 41bp 0.281097719990668 0.709737946596777 0.06703928 0.28292263 prediction 0.419475893193555 Functional Gain - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19459143 chr17:19459147 nonsynonymous SNV 0.660 0 25 hm5C_associated_SNPs_124757 0 0 1 1 19459147 19459170 mRNA hsa-miR-299-3p SLC47A1 miRanda miRanda
9597 chr1 179520422 179520422 1 + T C rs3818587 179520419 + 179520399 179520439 41 CTGGGAGAAGACAGGCAATTCAGTAGGTCAAATGGCAAAGG CTGGGAGAAGACAGGCAATTCAGCAGGTCAAATGGCAAAGG < 41bp 0.519013355695842 0.728722959840962 0.48126635 0.565308 prediction 0.41941920829024 Functional Gain - NPHS2 ENSG00000116218 CDS Human protein_coding chr1:179520419 chr1:179520422 synonymous SNV . 0 24 hm5C_associated_SNPs_124770 2 0 0 2 179520408 179520429 mRNA hsa-miR-192 C1orf125 miRanda miRanda
9598 chr1 179520422 179520422 1 + T C rs3818587 179520419 + 179520399 179520439 41 CTGGGAGAAGACAGGCAATTCAGTAGGTCAAATGGCAAAGG CTGGGAGAAGACAGGCAATTCAGCAGGTCAAATGGCAAAGG < 41bp 0.519013355695842 0.728722959840962 0.48126635 0.565308 prediction 0.41941920829024 Functional Gain - NPHS2 ENSG00000116218 CDS Human protein_coding chr1:179520419 chr1:179520422 synonymous SNV . 0 24 hm5C_associated_SNPs_124770 2 0 0 2 179520408 179520429 mRNA hsa-miR-215 C1orf125 miRanda miRanda
9599 chr15 69327818 69327818 1 + T A LUAD 69327814 + 69327794 69327834 41 ACGTGGTAGTGGGGCTGTCCCTCGTGCACACCGTGGCTCAC ACGTGGTAGTGGGGCTGTCCCTCGAGCACACCGTGGCTCAC < 41bp 0.696713293042499 0.906362500440168 0.14096841 0.3324626 prediction 0.419298414795338 Functional Gain - NOX5 ENSG00000255346 CDS Human protein_coding chr15:69327814 chr15:69327818 nonsynonymous SNV 0.015 3 25 hm5C_associated_SNPs_124800 0 0 0 1 69327817 69327841 mRNA hsa-miR-128 NOX5 miRanda miRanda
9600 chr1 109740138 109740138 1 + C T rs143231441 109740137 + 109740117 109740157 41 ACCGACAATGTCACTGACCTCCGGATTCCTGAGGGTGAGTC ACCGACAATGTCACTGACCTCTGGATTCCTGAGGGTGAGTC < 41bp 0.615369696856045 0.825013795531306 0.5728827 0.20891175 prediction 0.419288197350522 Functional Gain - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109740137 chr1:109740138 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_124802 0 0 0 7 109740115 109740138 mRNA hsa-let-7a KIAA1324 miRanda miRanda
9601 chr1 109740138 109740138 1 + C T rs143231441 109740137 + 109740117 109740157 41 ACCGACAATGTCACTGACCTCCGGATTCCTGAGGGTGAGTC ACCGACAATGTCACTGACCTCTGGATTCCTGAGGGTGAGTC < 41bp 0.615369696856045 0.825013795531306 0.5728827 0.20891175 prediction 0.419288197350522 Functional Gain - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109740137 chr1:109740138 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_124802 0 0 0 7 109740113 109740138 mRNA hsa-let-7b KIAA1324 miRanda miRanda
9602 chr1 109740138 109740138 1 + C T rs143231441 109740137 + 109740117 109740157 41 ACCGACAATGTCACTGACCTCCGGATTCCTGAGGGTGAGTC ACCGACAATGTCACTGACCTCTGGATTCCTGAGGGTGAGTC < 41bp 0.615369696856045 0.825013795531306 0.5728827 0.20891175 prediction 0.419288197350522 Functional Gain - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109740137 chr1:109740138 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_124802 0 0 0 7 109740116 109740138 mRNA hsa-let-7c KIAA1324 miRanda miRanda
9603 chr1 109740138 109740138 1 + C T rs143231441 109740137 + 109740117 109740157 41 ACCGACAATGTCACTGACCTCCGGATTCCTGAGGGTGAGTC ACCGACAATGTCACTGACCTCTGGATTCCTGAGGGTGAGTC < 41bp 0.615369696856045 0.825013795531306 0.5728827 0.20891175 prediction 0.419288197350522 Functional Gain - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109740137 chr1:109740138 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_124802 0 0 0 7 109740115 109740138 mRNA hsa-let-7e KIAA1324 miRanda miRanda
9604 chr1 109740138 109740138 1 + C T rs143231441 109740137 + 109740117 109740157 41 ACCGACAATGTCACTGACCTCCGGATTCCTGAGGGTGAGTC ACCGACAATGTCACTGACCTCTGGATTCCTGAGGGTGAGTC < 41bp 0.615369696856045 0.825013795531306 0.5728827 0.20891175 prediction 0.419288197350522 Functional Gain - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109740137 chr1:109740138 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_124802 0 0 0 7 109740115 109740138 mRNA hsa-let-7f KIAA1324 miRanda miRanda
9605 chr1 109740138 109740138 1 + C T rs143231441 109740137 + 109740117 109740157 41 ACCGACAATGTCACTGACCTCCGGATTCCTGAGGGTGAGTC ACCGACAATGTCACTGACCTCTGGATTCCTGAGGGTGAGTC < 41bp 0.615369696856045 0.825013795531306 0.5728827 0.20891175 prediction 0.419288197350522 Functional Gain - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109740137 chr1:109740138 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_124802 0 0 0 7 109740115 109740138 mRNA hsa-miR-98 KIAA1324 miRanda miRanda
9606 chr1 109740138 109740138 1 + C T rs143231441 109740137 + 109740117 109740157 41 ACCGACAATGTCACTGACCTCCGGATTCCTGAGGGTGAGTC ACCGACAATGTCACTGACCTCTGGATTCCTGAGGGTGAGTC < 41bp 0.615369696856045 0.825013795531306 0.5728827 0.20891175 prediction 0.419288197350522 Functional Gain - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109740137 chr1:109740138 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_124802 0 0 0 7 109740114 109740138 mRNA hsa-let-7i KIAA1324 miRanda miRanda
9607 chr21 37443587 37443587 1 + C G rs118126898 37443583 + 37443563 37443603 41 TCGCACTGGTCTTTGCACACCTGGCTGACTCTCATCCTTCA TCGCACTGGTCTTTGCACACCTGGGTGACTCTCATCCTTCA < 41bp 0.40611566201615 0.709587098646279 0.32124323 0.5643577 prediction 0.419174197292558 Functional Gain - LOC100133286 ENSG00000230212 ncRNA_intronic Human sense_intronic chr21:37443583 chr21:37443587 . . 0 25 hm5C_associated_SNPs_124834 0 0 0 1 37443565 37443587 mRNA hsa-miR-199a-5p CBR1 miRanda miRanda
9608 chr10 118385511 118385511 1 + C T STAD 118385510 + 118385490 118385530 41 GCTTCAAACTTCCAACTGGACCGCAAGACACGCTTCATCAT GCTTCAAACTTCCAACTGGACTGCAAGACACGCTTCATCAT < 41bp 0.534355812874287 0.743940583934892 0.022452831 0.011769056 prediction 0.419169542121212 Functional Gain - PNLIPRP2 ENSG00000165862 CDS Human other chr10:118385510 chr10:118385511 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_124837 0 0 0 2 118385501 118385522 mRNA hsa-miR-187 PNLIPRP2 miRanda miRanda
9609 chr10 118385511 118385511 1 + C T STAD 118385510 + 118385490 118385530 41 GCTTCAAACTTCCAACTGGACCGCAAGACACGCTTCATCAT GCTTCAAACTTCCAACTGGACTGCAAGACACGCTTCATCAT < 41bp 0.534355812874287 0.743940583934892 0.022452831 0.011769056 prediction 0.419169542121212 Functional Gain - PNLIPRP2 ENSG00000165862 CDS Human other chr10:118385510 chr10:118385511 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_124837 0 0 0 2 118385499 118385519 mRNA hsa-miR-431 PNLIPRP2 miRanda miRanda
9610 chr12 121592689 121592689 1 + T C rs17525809 121592687 + 121592667 121592707 41 GCAGAGGTGAAAGAGGAGATCGTGGAGAATGGAGTGAAGAA GCAGAGGTGAAAGAGGAGATCGCGGAGAATGGAGTGAAGAA < 41bp 0.533662180772794 0.74312137116861 0.81322575 0.86071885 prediction 0.418918380791632 Functional Gain - P2RX7 ENSG00000089041 CDS Human protein_coding chr12:121592687 chr12:121592689 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_124900 0 0 0 1 121592679 121592701 mRNA hsa-miR-136 P2RX7 miRanda miRanda
9611 chr1 153752369 153752369 1 + C G OV 153752368 + 153752348 153752388 41 TGGCAAATGAGGGCTTCGACCCCAGCACCCTGTCTGACCCA TGGCAAATGAGGGCTTCGACCGCAGCACCCTGTCTGACCCA < 41bp 0.383913290504976 0.709371691412555 0.27766758 0.8727279 prediction 0.41874338282511 Functional Gain - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153752368 chr1:153752369 nonsynonymous SNV 0.252 4 22 hm5C_associated_SNPs_124951 0 0 1 1 153752355 153752379 mRNA hsa-miR-296-3p SLC27A3 miRanda miRanda
9612 chr4 39482627 39482627 1 + T C rs2276893 39482625 + 39482605 39482645 41 TCTCGGCCATTCATTTTAATCGTGATGGATTCTTGATAGTT TCTCGGCCATTCATTTTAATCGCGATGGATTCTTGATAGTT < 41bp 0.618827353463682 0.828161376739116 0.3700533 0.35873094 prediction 0.418668046550869 Functional Gain - LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482625 chr4:39482627 . . 0 23 hm5C_associated_SNPs_124964 0 0 0 1 39482620 39482643 mRNA hsa-miR-361-5p LOC401127 miRanda miRanda
9613 chr18 22056937 22056937 1 + T C LUAD 22056935 + 22056915 22056955 41 ATCTTAGTCGCTTATTTCAACATGAATATTTATTGGAGCCT ATCTTAGTCGCTTATTTCAACACGAATATTTATTGGAGCCT < 41bp 0.433207795472937 0.709325858714735 0.10219762 0.12644443 prediction 0.418651717429469 Functional Gain - HRH4 ENSG00000134489 CDS Human protein_coding chr18:22056935 chr18:22056937 nonsynonymous SNV 0.108 0 23 hm5C_associated_SNPs_124969 0 0 0 1 22056916 22056937 mRNA hsa-miR-653 HRH4 miRanda miRanda
9614 chr12 4881766 4881766 1 + C T rs2286581 4881765 + 4881745 4881785 41 TCAGACCAACAGCCAGTGATCCTCAGATGGTGCTGGATCTG TCAGACCAACAGCCAGTGATCTTCAGATGGTGCTGGATCTG < 41bp 0.473627724566538 0.709318694824173 0.58611137 0.8441429 prediction 0.418637389648346 Functional Gain - GALNT8 ENSG00000130035 UTR3 Human protein_coding chr12:4881765 chr12:4881766 . . 0 22 hm5C_associated_SNPs_124975 0 0 0 3 4881764 4881779 mRNA hsa-miR-29a GALNT8 miRanda miRanda
9615 chr12 4881766 4881766 1 + C T rs2286581 4881765 + 4881745 4881785 41 TCAGACCAACAGCCAGTGATCCTCAGATGGTGCTGGATCTG TCAGACCAACAGCCAGTGATCTTCAGATGGTGCTGGATCTG < 41bp 0.473627724566538 0.709318694824173 0.58611137 0.8441429 prediction 0.418637389648346 Functional Gain - GALNT8 ENSG00000130035 UTR3 Human protein_coding chr12:4881765 chr12:4881766 . . 0 22 hm5C_associated_SNPs_124975 0 0 0 3 4881764 4881779 mRNA hsa-miR-29b GALNT8 miRanda miRanda
9616 chr12 4881766 4881766 1 + C T rs2286581 4881765 + 4881745 4881785 41 TCAGACCAACAGCCAGTGATCCTCAGATGGTGCTGGATCTG TCAGACCAACAGCCAGTGATCTTCAGATGGTGCTGGATCTG < 41bp 0.473627724566538 0.709318694824173 0.58611137 0.8441429 prediction 0.418637389648346 Functional Gain - GALNT8 ENSG00000130035 UTR3 Human protein_coding chr12:4881765 chr12:4881766 . . 0 22 hm5C_associated_SNPs_124975 0 0 0 3 4881764 4881779 mRNA hsa-miR-29c GALNT8 miRanda miRanda
9617 chr7 5108406 5108406 1 + T G rs568699333 5108404 + 5108384 5108424 41 ACTGCACAAAACAGAACTATCTTAAGGCACATGTGCAATGG ACTGCACAAAACAGAACTATCTGAAGGCACATGTGCAATGG < 41bp 0.464134571075957 0.709283790853382 0.023648798 0.12983 prediction 0.418567581706765 Functional Gain - RBAK ENSG00000146587 UTR3 Human protein_coding chr7:5108404 chr7:5108406 . . 0 23 hm5C_associated_SNPs_124997 0 0 1 7 5108402 5108423 mRNA hsa-miR-25 RBAK miRanda miRanda
9618 chr7 5108406 5108406 1 + T G rs568699333 5108404 + 5108384 5108424 41 ACTGCACAAAACAGAACTATCTTAAGGCACATGTGCAATGG ACTGCACAAAACAGAACTATCTGAAGGCACATGTGCAATGG < 41bp 0.464134571075957 0.709283790853382 0.023648798 0.12983 prediction 0.418567581706765 Functional Gain - RBAK ENSG00000146587 UTR3 Human protein_coding chr7:5108404 chr7:5108406 . . 0 23 hm5C_associated_SNPs_124997 0 0 1 7 5108399 5108423 mRNA hsa-miR-32 RBAK miRanda miRanda
9619 chr7 5108406 5108406 1 + T G rs568699333 5108404 + 5108384 5108424 41 ACTGCACAAAACAGAACTATCTTAAGGCACATGTGCAATGG ACTGCACAAAACAGAACTATCTGAAGGCACATGTGCAATGG < 41bp 0.464134571075957 0.709283790853382 0.023648798 0.12983 prediction 0.418567581706765 Functional Gain - RBAK ENSG00000146587 UTR3 Human protein_coding chr7:5108404 chr7:5108406 . . 0 23 hm5C_associated_SNPs_124997 0 0 1 7 5108402 5108423 mRNA hsa-miR-92a RBAK miRanda miRanda
9620 chr7 5108406 5108406 1 + T G rs568699333 5108404 + 5108384 5108424 41 ACTGCACAAAACAGAACTATCTTAAGGCACATGTGCAATGG ACTGCACAAAACAGAACTATCTGAAGGCACATGTGCAATGG < 41bp 0.464134571075957 0.709283790853382 0.023648798 0.12983 prediction 0.418567581706765 Functional Gain - RBAK ENSG00000146587 UTR3 Human protein_coding chr7:5108404 chr7:5108406 . . 0 23 hm5C_associated_SNPs_124997 0 0 1 7 5108401 5108423 mRNA hsa-miR-363 RBAK miRanda miRanda
9621 chr7 5108406 5108406 1 + T G rs568699333 5108404 + 5108384 5108424 41 ACTGCACAAAACAGAACTATCTTAAGGCACATGTGCAATGG ACTGCACAAAACAGAACTATCTGAAGGCACATGTGCAATGG < 41bp 0.464134571075957 0.709283790853382 0.023648798 0.12983 prediction 0.418567581706765 Functional Gain - RBAK ENSG00000146587 UTR3 Human protein_coding chr7:5108404 chr7:5108406 . . 0 23 hm5C_associated_SNPs_124997 0 0 1 7 5108402 5108423 mRNA hsa-miR-367 RBAK miRanda miRanda
9622 chr7 5108406 5108406 1 + T G rs568699333 5108404 + 5108384 5108424 41 ACTGCACAAAACAGAACTATCTTAAGGCACATGTGCAATGG ACTGCACAAAACAGAACTATCTGAAGGCACATGTGCAATGG < 41bp 0.464134571075957 0.709283790853382 0.023648798 0.12983 prediction 0.418567581706765 Functional Gain - RBAK ENSG00000146587 UTR3 Human protein_coding chr7:5108404 chr7:5108406 . . 0 23 hm5C_associated_SNPs_124997 0 0 1 7 5108396 5108416 mRNA hsa-miR-455-5p RBAK miRanda miRanda
9623 chr7 5108406 5108406 1 + T G rs568699333 5108404 + 5108384 5108424 41 ACTGCACAAAACAGAACTATCTTAAGGCACATGTGCAATGG ACTGCACAAAACAGAACTATCTGAAGGCACATGTGCAATGG < 41bp 0.464134571075957 0.709283790853382 0.023648798 0.12983 prediction 0.418567581706765 Functional Gain - RBAK ENSG00000146587 UTR3 Human protein_coding chr7:5108404 chr7:5108406 . . 0 23 hm5C_associated_SNPs_124997 0 0 1 7 5108402 5108423 mRNA hsa-miR-92b RBAK miRanda miRanda
9624 chr19 17836824 17836824 1 + C A UCEC 17836823 + 17836803 17836843 41 TCTGAGGGCCTGTGCGAATTCCTGGAGTACGTGGCTGAGTC TCTGAGGGCCTGTGCGAATTCATGGAGTACGTGGCTGAGTC < 41bp 0.615148440681956 0.824343137004939 0.8874874 0.9030632 prediction 0.418389392645966 Functional Gain - MAP1S ENSG00000130479 CDS Human protein_coding chr19:17836823 chr19:17836824 nonsynonymous SNV 0.111 1 22 hm5C_associated_SNPs_125044 0 0 1 1 17836819 17836841 mRNA hsa-miR-197 MAP1S miRanda miRanda
9625 chr16 31122537 31122537 1 + T C UCEC 31122535 + 31122515 31122555 41 CCGGAGCTGCTCAAGAATGCCATGAGGTGGGGTGGCTTGAT CCGGAGCTGCTCAAGAATGCCACGAGGTGGGGTGGCTTGAT < 41bp 0.655304106142988 0.864490577743955 0.4394868 0.41658476 prediction 0.418372943201934 Functional Gain - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31122535 chr16:31122537 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_125049 0 0 1 1 31122530 31122540 mRNA hsa-miR-136 BCKDK miRanda miRanda
9626 chr14 24617197 24617197 1 + C A UCEC 24617193 + 24617173 24617213 41 CCTTGCTCCCAGCCCCGAAACTACCTCAACACCCTGTCCAC CCTTGCTCCCAGCCCCGAAACTACATCAACACCCTGTCCAC < 41bp 0.279157477210976 0.709162584934798 0.018321991 0.62658685 prediction 0.418325169869596 Functional Gain - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617193 chr14:24617197 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_125060 0 0 0 11 24617185 24617200 mRNA hsa-let-7a RNF31 miRanda miRanda
9627 chr14 24617197 24617197 1 + C A UCEC 24617193 + 24617173 24617213 41 CCTTGCTCCCAGCCCCGAAACTACCTCAACACCCTGTCCAC CCTTGCTCCCAGCCCCGAAACTACATCAACACCCTGTCCAC < 41bp 0.279157477210976 0.709162584934798 0.018321991 0.62658685 prediction 0.418325169869596 Functional Gain - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617193 chr14:24617197 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_125060 0 0 0 11 24617185 24617200 mRNA hsa-let-7b RNF31 miRanda miRanda
9628 chr14 24617197 24617197 1 + C A UCEC 24617193 + 24617173 24617213 41 CCTTGCTCCCAGCCCCGAAACTACCTCAACACCCTGTCCAC CCTTGCTCCCAGCCCCGAAACTACATCAACACCCTGTCCAC < 41bp 0.279157477210976 0.709162584934798 0.018321991 0.62658685 prediction 0.418325169869596 Functional Gain - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617193 chr14:24617197 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_125060 0 0 0 11 24617185 24617200 mRNA hsa-let-7c RNF31 miRanda miRanda
9629 chr14 24617197 24617197 1 + C A UCEC 24617193 + 24617173 24617213 41 CCTTGCTCCCAGCCCCGAAACTACCTCAACACCCTGTCCAC CCTTGCTCCCAGCCCCGAAACTACATCAACACCCTGTCCAC < 41bp 0.279157477210976 0.709162584934798 0.018321991 0.62658685 prediction 0.418325169869596 Functional Gain - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617193 chr14:24617197 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_125060 0 0 0 11 24617185 24617200 mRNA hsa-let-7d RNF31 miRanda miRanda
9630 chr14 24617197 24617197 1 + C A UCEC 24617193 + 24617173 24617213 41 CCTTGCTCCCAGCCCCGAAACTACCTCAACACCCTGTCCAC CCTTGCTCCCAGCCCCGAAACTACATCAACACCCTGTCCAC < 41bp 0.279157477210976 0.709162584934798 0.018321991 0.62658685 prediction 0.418325169869596 Functional Gain - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617193 chr14:24617197 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_125060 0 0 0 11 24617185 24617200 mRNA hsa-let-7e RNF31 miRanda miRanda
9631 chr14 24617197 24617197 1 + C A UCEC 24617193 + 24617173 24617213 41 CCTTGCTCCCAGCCCCGAAACTACCTCAACACCCTGTCCAC CCTTGCTCCCAGCCCCGAAACTACATCAACACCCTGTCCAC < 41bp 0.279157477210976 0.709162584934798 0.018321991 0.62658685 prediction 0.418325169869596 Functional Gain - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617193 chr14:24617197 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_125060 0 0 0 11 24617185 24617200 mRNA hsa-let-7f RNF31 miRanda miRanda
9632 chr14 24617197 24617197 1 + C A UCEC 24617193 + 24617173 24617213 41 CCTTGCTCCCAGCCCCGAAACTACCTCAACACCCTGTCCAC CCTTGCTCCCAGCCCCGAAACTACATCAACACCCTGTCCAC < 41bp 0.279157477210976 0.709162584934798 0.018321991 0.62658685 prediction 0.418325169869596 Functional Gain - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617193 chr14:24617197 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_125060 0 0 0 11 24617185 24617200 mRNA hsa-miR-98 RNF31 miRanda miRanda
9633 chr14 24617197 24617197 1 + C A UCEC 24617193 + 24617173 24617213 41 CCTTGCTCCCAGCCCCGAAACTACCTCAACACCCTGTCCAC CCTTGCTCCCAGCCCCGAAACTACATCAACACCCTGTCCAC < 41bp 0.279157477210976 0.709162584934798 0.018321991 0.62658685 prediction 0.418325169869596 Functional Gain - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617193 chr14:24617197 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_125060 0 0 0 11 24617185 24617199 mRNA hsa-miR-196a RNF31 miRanda miRanda
9634 chr14 24617197 24617197 1 + C A UCEC 24617193 + 24617173 24617213 41 CCTTGCTCCCAGCCCCGAAACTACCTCAACACCCTGTCCAC CCTTGCTCCCAGCCCCGAAACTACATCAACACCCTGTCCAC < 41bp 0.279157477210976 0.709162584934798 0.018321991 0.62658685 prediction 0.418325169869596 Functional Gain - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617193 chr14:24617197 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_125060 0 0 0 11 24617185 24617200 mRNA hsa-let-7g RNF31 miRanda miRanda
9635 chr14 24617197 24617197 1 + C A UCEC 24617193 + 24617173 24617213 41 CCTTGCTCCCAGCCCCGAAACTACCTCAACACCCTGTCCAC CCTTGCTCCCAGCCCCGAAACTACATCAACACCCTGTCCAC < 41bp 0.279157477210976 0.709162584934798 0.018321991 0.62658685 prediction 0.418325169869596 Functional Gain - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617193 chr14:24617197 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_125060 0 0 0 11 24617185 24617200 mRNA hsa-let-7i RNF31 miRanda miRanda
9636 chr14 24617197 24617197 1 + C A UCEC 24617193 + 24617173 24617213 41 CCTTGCTCCCAGCCCCGAAACTACCTCAACACCCTGTCCAC CCTTGCTCCCAGCCCCGAAACTACATCAACACCCTGTCCAC < 41bp 0.279157477210976 0.709162584934798 0.018321991 0.62658685 prediction 0.418325169869596 Functional Gain - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617193 chr14:24617197 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_125060 0 0 0 11 24617185 24617199 mRNA hsa-miR-196b RNF31 miRanda miRanda
9637 chr1 6279483 6279483 1 + C T rs370592083 6279482 + 6279462 6279502 41 ACTTAGCAAATGGGACCGGTCCCCAGGGTCAGGCTCTTAGA ACTTAGCAAATGGGACCGGTCTCCAGGGTCAGGCTCTTAGA < 41bp 0.466588185228612 0.709104634537774 0.052042484 0.9325621 prediction 0.418209269075548 Functional Gain - RNF207 ENSG00000158286 UTR3 Human protein_coding chr1:6279482 chr1:6279483 . . 0 22 hm5C_associated_SNPs_125097 0 0 1 1 6279471 6279492 mRNA hsa-miR-504 RNF207 miRanda miRanda
9638 chr10 21805147 21805147 1 + C T LUSC 21805146 + 21805126 21805166 41 GAAACAACTCCCCAGGCTGGCCGGGCAGTACACCGGAGATG GAAACAACTCCCCAGGCTGGCTGGGCAGTACACCGGAGATG < 41bp 0.501483214678079 0.710530560839212 0.44903517 0.32381696 prediction 0.418094692322266 Functional Gain - SKIDA1 ENSG00000180592 CDS Human protein_coding chr10:21805146 chr10:21805147 synonymous SNV . 0 22 hm5C_associated_SNPs_125133 0 0 0 1 21805133 21805157 mRNA hsa-miR-346 LOC219688 miRanda miRanda
9639 chr6 24418414 24418414 1 + T C LUAD 24418412 + 24418392 24418432 41 TCTCCAATGCAGCTCGTGAGCTTAGGGTGCTGATTGATGAT TCTCCAATGCAGCTCGTGAGCTCAGGGTGCTGATTGATGAT < 41bp 0.415839427228886 0.708989814274662 0.055397272 0.0680739 prediction 0.417979628549323 Functional Gain - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24418412 chr6:24418414 synonymous SNV . 0 23 hm5C_associated_SNPs_125163 0 0 1 1 24418412 24418434 mRNA hsa-miR-216a MRS2 miRanda miRanda
9640 chr7 48966328 48966328 1 + T A rs10226696 48966324 + 48966304 48966344 41 GGCATTAGGGCCATTATGAACATGTTACAGTGCTGCAGAGA GGCATTAGGGCCATTATGAACATGATACAGTGCTGCAGAGA < 41bp 0.436143557733662 0.708889350640133 0.23108703 0.22712639 prediction 0.417778701280265 Functional Gain - CDC14C ENSG00000218305 downstream Human processed_pseudogene chr7:48966324 chr7:48966328 . . 0 25 hm5C_associated_SNPs_125219 0 0 0 1 48966328 48966347 mRNA hsa-miR-216b CDC14C miRanda miRanda
9641 chr16 67397549 67397549 1 + A G LIHC 67397546 + 67397526 67397566 41 ACCGGGAAATAAAGGATTCCCTAAGTACTTCTGCAACTCAG ACCGGGAAATAAAGGATTCCCTAGGTACTTCTGCAACTCAG < 41bp 0.586013215331366 0.794842413409046 0.117419034 0.2458922 prediction 0.41765839615536 Functional Gain - LRRC36 ENSG00000159708 CDS Human protein_coding chr16:67397546 chr16:67397549 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_125253 0 0 0 2 67397548 67397569 mRNA hsa-miR-125b LRRC36 miRanda miRanda
9642 chr16 67397549 67397549 1 + A G LIHC 67397546 + 67397526 67397566 41 ACCGGGAAATAAAGGATTCCCTAAGTACTTCTGCAACTCAG ACCGGGAAATAAAGGATTCCCTAGGTACTTCTGCAACTCAG < 41bp 0.586013215331366 0.794842413409046 0.117419034 0.2458922 prediction 0.41765839615536 Functional Gain - LRRC36 ENSG00000159708 CDS Human protein_coding chr16:67397546 chr16:67397549 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_125253 0 0 0 2 67397546 67397569 mRNA hsa-miR-125a-5p LRRC36 miRanda miRanda
9643 chr9 116132540 116132540 1 + C T rs186113785 116132539 + 116132519 116132559 41 AAGAGAAACAGGGCCCATAACCAGTGGGCAGCTTTAGGAGG AAGAGAAACAGGGCCCATAACTAGTGGGCAGCTTTAGGAGG < 41bp 0.535410758330692 0.74419641581289 0.22237441 0.19032046 prediction 0.417571314964395 Functional Gain - BSPRY ENSG00000119411 UTR3 Human protein_coding chr9:116132539 chr9:116132540 . . 0 22 hm5C_associated_SNPs_125280 0 0 1 5 116132531 116132552 mRNA hsa-miR-22 BSPRY miRanda miRanda
9644 chr9 116132540 116132540 1 + C T rs186113785 116132539 + 116132519 116132559 41 AAGAGAAACAGGGCCCATAACCAGTGGGCAGCTTTAGGAGG AAGAGAAACAGGGCCCATAACTAGTGGGCAGCTTTAGGAGG < 41bp 0.535410758330692 0.74419641581289 0.22237441 0.19032046 prediction 0.417571314964395 Functional Gain - BSPRY ENSG00000119411 UTR3 Human protein_coding chr9:116132539 chr9:116132540 . . 0 22 hm5C_associated_SNPs_125280 0 0 1 5 116132533 116132554 mRNA hsa-miR-320a BSPRY miRanda miRanda
9645 chr9 116132540 116132540 1 + C T rs186113785 116132539 + 116132519 116132559 41 AAGAGAAACAGGGCCCATAACCAGTGGGCAGCTTTAGGAGG AAGAGAAACAGGGCCCATAACTAGTGGGCAGCTTTAGGAGG < 41bp 0.535410758330692 0.74419641581289 0.22237441 0.19032046 prediction 0.417571314964395 Functional Gain - BSPRY ENSG00000119411 UTR3 Human protein_coding chr9:116132539 chr9:116132540 . . 0 22 hm5C_associated_SNPs_125280 0 0 1 5 116132533 116132554 mRNA hsa-miR-320b BSPRY miRanda miRanda
9646 chr9 116132540 116132540 1 + C T rs186113785 116132539 + 116132519 116132559 41 AAGAGAAACAGGGCCCATAACCAGTGGGCAGCTTTAGGAGG AAGAGAAACAGGGCCCATAACTAGTGGGCAGCTTTAGGAGG < 41bp 0.535410758330692 0.74419641581289 0.22237441 0.19032046 prediction 0.417571314964395 Functional Gain - BSPRY ENSG00000119411 UTR3 Human protein_coding chr9:116132539 chr9:116132540 . . 0 22 hm5C_associated_SNPs_125280 0 0 1 5 116132535 116132554 mRNA hsa-miR-320c BSPRY miRanda miRanda
9647 chr9 116132540 116132540 1 + C T rs186113785 116132539 + 116132519 116132559 41 AAGAGAAACAGGGCCCATAACCAGTGGGCAGCTTTAGGAGG AAGAGAAACAGGGCCCATAACTAGTGGGCAGCTTTAGGAGG < 41bp 0.535410758330692 0.74419641581289 0.22237441 0.19032046 prediction 0.417571314964395 Functional Gain - BSPRY ENSG00000119411 UTR3 Human protein_coding chr9:116132539 chr9:116132540 . . 0 22 hm5C_associated_SNPs_125280 0 0 1 5 116132536 116132554 mRNA hsa-miR-320d BSPRY miRanda miRanda
9648 chr13 70681819 70681819 1 + C A LUSC 70681818 + 70681798 70681838 41 TCACATCGAAGTCTTTTCGCCCAGAGCCTGACATGCTTTAC TCACATCGAAGTCTTTTCGCCAAGAGCCTGACATGCTTTAC < 41bp 0.619824378774644 0.828582249815348 0.034129053 0.5403718 prediction 0.417515742081407 Functional Gain - KLHL1 ENSG00000150361 CDS Human protein_coding chr13:70681818 chr13:70681819 nonsynonymous SNV 0.992 3 22 hm5C_associated_SNPs_125298 0 0 0 2 70681816 70681839 mRNA hsa-miR-30c ATXN8OS miRanda miRanda
9649 chr13 70681819 70681819 1 + C A LUSC 70681818 + 70681798 70681838 41 TCACATCGAAGTCTTTTCGCCCAGAGCCTGACATGCTTTAC TCACATCGAAGTCTTTTCGCCAAGAGCCTGACATGCTTTAC < 41bp 0.619824378774644 0.828582249815348 0.034129053 0.5403718 prediction 0.417515742081407 Functional Gain - KLHL1 ENSG00000150361 CDS Human protein_coding chr13:70681818 chr13:70681819 nonsynonymous SNV 0.992 3 22 hm5C_associated_SNPs_125298 0 0 0 2 70681817 70681839 mRNA hsa-miR-30b ATXN8OS miRanda miRanda
9650 chr14 75201605 75201605 1 + C T UCEC 75201604 + 75201584 75201624 41 GATACAACATTGAACGGATGCCAGATGATTATGGAGCCCCT GATACAACATTGAACGGATGCTAGATGATTATGGAGCCCCT < 41bp 0.588268277808291 0.796770109955882 0.4276606 0.53204346 prediction 0.417003664295183 Functional Gain - FCF1 ENSG00000119616 CDS Human protein_coding chr14:75201604 chr14:75201605 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_125412 0 0 1 2 75201586 75201608 mRNA hsa-miR-149 FCF1 miRanda miRanda
9651 chr14 75201605 75201605 1 + C T UCEC 75201604 + 75201584 75201624 41 GATACAACATTGAACGGATGCCAGATGATTATGGAGCCCCT GATACAACATTGAACGGATGCTAGATGATTATGGAGCCCCT < 41bp 0.588268277808291 0.796770109955882 0.4276606 0.53204346 prediction 0.417003664295183 Functional Gain - FCF1 ENSG00000119616 CDS Human protein_coding chr14:75201604 chr14:75201605 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_125412 0 0 1 2 75201585 75201605 mRNA hsa-miR-324-5p FCF1 miRanda miRanda
9652 chr22 39414439 39414439 1 + A G rs181625970 39414436 + 39414416 39414456 41 CTGTCTCCTCTAGCCTCCTGCTCATGCTGCACGGGCCTCCC CTGTCTCCTCTAGCCTCCTGCTCGTGCTGCACGGGCCTCCC < 41bp 0.462306369727134 0.708475367900142 0.19522232 0.2990979 prediction 0.416950735800285 Functional Gain - APOBEC3C ENSG00000244509 UTR3 Human protein_coding chr22:39414436 chr22:39414439 . . 0 24 hm5C_associated_SNPs_125425 0 0 1 2 39414423 39414446 mRNA hsa-miR-103 APOBEC3C miRanda miRanda
9653 chr22 39414439 39414439 1 + A G rs181625970 39414436 + 39414416 39414456 41 CTGTCTCCTCTAGCCTCCTGCTCATGCTGCACGGGCCTCCC CTGTCTCCTCTAGCCTCCTGCTCGTGCTGCACGGGCCTCCC < 41bp 0.462306369727134 0.708475367900142 0.19522232 0.2990979 prediction 0.416950735800285 Functional Gain - APOBEC3C ENSG00000244509 UTR3 Human protein_coding chr22:39414436 chr22:39414439 . . 0 24 hm5C_associated_SNPs_125425 0 0 1 2 39414423 39414446 mRNA hsa-miR-107 APOBEC3C miRanda miRanda
9654 chr4 110932544 110932544 1 + T A CESC 110932540 + 110932520 110932560 41 GTGTCGAGAAGCCCCATTCTCTCCTATCAGCTAACCCATTA GTGTCGAGAAGCCCCATTCTCTCCAATCAGCTAACCCATTA < 41bp 0.698627132377913 0.907052789629726 0.12656376 0.96184623 prediction 0.416851314503626 Functional Gain - EGF ENSG00000138798 CDS Human protein_coding chr4:110932540 chr4:110932544 nonsynonymous SNV 0.034 1 25 hm5C_associated_SNPs_125455 0 0 0 1 110932523 110932544 mRNA hsa-miR-185 EGF miRanda miRanda
9655 chr3 160786763 160786763 1 + T G UCEC 160786761 + 160786741 160786781 41 GCCTGAGTTCATGATCTTGGCATCAGATGGTCTCTGGGATG GCCTGAGTTCATGATCTTGGCAGCAGATGGTCTCTGGGATG < 41bp 0.402713468557694 0.70837666132346 0.06480309 0.19622245 prediction 0.416753322646921 Functional Gain - PPM1L ENSG00000163590 CDS Human protein_coding chr3:160786761 chr3:160786763 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_125478 0 0 0 1 160786760 160786783 mRNA hsa-miR-324-5p PPM1L miRanda miRanda
9656 chr12 14613832 14613832 1 + T A SKCM 14613828 + 14613808 14613848 41 CGTTCCTTCTGTGCCCAGTCCTAGTATTCAAAGGAACCCTA CGTTCCTTCTGTGCCCAGTCCTAGAATTCAAAGGAACCCTA < 41bp 0.357613337669526 0.708306343690132 0.07024953 0.05914566 prediction 0.416612687380264 Functional Gain - ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14613828 chr12:14613832 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_125514 0 0 1 3 14613827 14613848 mRNA hsa-miR-296-3p ATF7IP miRanda miRanda
9657 chr12 14613832 14613832 1 + T A SKCM 14613828 + 14613808 14613848 41 CGTTCCTTCTGTGCCCAGTCCTAGTATTCAAAGGAACCCTA CGTTCCTTCTGTGCCCAGTCCTAGAATTCAAAGGAACCCTA < 41bp 0.357613337669526 0.708306343690132 0.07024953 0.05914566 prediction 0.416612687380264 Functional Gain - ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14613828 chr12:14613832 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_125514 0 0 1 3 14613812 14613832 mRNA hsa-miR-378 ATF7IP miRanda miRanda
9658 chr12 14613832 14613832 1 + T A SKCM 14613828 + 14613808 14613848 41 CGTTCCTTCTGTGCCCAGTCCTAGTATTCAAAGGAACCCTA CGTTCCTTCTGTGCCCAGTCCTAGAATTCAAAGGAACCCTA < 41bp 0.357613337669526 0.708306343690132 0.07024953 0.05914566 prediction 0.416612687380264 Functional Gain - ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14613828 chr12:14613832 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_125514 0 0 1 3 14613811 14613832 mRNA hsa-miR-422a ATF7IP miRanda miRanda
9659 chr11 36484208 36484208 1 + T C rs514352 36484205 + 36484185 36484225 41 TGCTCCAGTGAGCCCAACATCACTGACAACCCTGACGGACT TGCTCCAGTGAGCCCAACATCACCGACAACCCTGACGGACT < 41bp 0.51367969618267 0.721966972299125 0.2768413 0.32739437 prediction 0.416574552232909 Functional Gain - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36484205 chr11:36484208 synonymous SNV . 0 24 hm5C_associated_SNPs_125521 0 0 1 1 36484186 36484211 mRNA hsa-miR-433 PRR5L miRanda miRanda
9660 chr16 88706636 88706636 1 + C T rs374913351 88706635 + 88706615 88706655 41 GGACAGCCCCCCACTGTTCTCCTCATCTCCAGCCTCAGTAG GGACAGCCCCCCACTGTTCTCTTCATCTCCAGCCTCAGTAG < 41bp 0.560526556723395 0.768753411694331 0.018510193 0.030922413 prediction 0.416453709941872 Functional Gain - IL17C ENSG00000124391 UTR3 Human protein_coding chr16:88706635 chr16:88706636 . . 0 22 hm5C_associated_SNPs_125552 0 0 0 1 88706630 88706651 mRNA hsa-miR-485-5p IL17C miRanda miRanda
9661 chr8 19824237 19824237 1 + T C rs58998793 19824235 + 19824215 19824255 41 ATGTCGGAGTAGAAATTGTTCCTGATGTGCCAGAACTTCGA ATGTCGGAGTAGAAATTGTTCCCGATGTGCCAGAACTTCGA < 41bp 0.538640294167372 0.746854099730552 0.12163988 0.106479585 prediction 0.416427611126359 Functional Gain - LPL ENSG00000175445 UTR3 Human protein_coding chr8:19824235 chr8:19824237 . . 0 23 hm5C_associated_SNPs_125560 1 0 1 1 19824217 19824239 mRNA hsa-miR-873 LPL miRanda miRanda
9662 chr11 73964914 73964914 1 + C T rs181636068 73964913 + 73964893 73964933 41 ATCTGAGTTCAAATGTCTTCCCAGGCTCAGGGACCTCCATT ATCTGAGTTCAAATGTCTTCCTAGGCTCAGGGACCTCCATT < 41bp 0.529362946508157 0.737529287142979 0.36717662 0.26581812 prediction 0.416332681269645 Functional Gain - PPME1 ENSG00000214517 UTR3 Human protein_coding chr11:73964913 chr11:73964914 . . 0 22 hm5C_associated_SNPs_125580 0 0 1 3 73964892 73964914 mRNA hsa-miR-7 PPME1 miRanda miRanda
9663 chr11 73964914 73964914 1 + C T rs181636068 73964913 + 73964893 73964933 41 ATCTGAGTTCAAATGTCTTCCCAGGCTCAGGGACCTCCATT ATCTGAGTTCAAATGTCTTCCTAGGCTCAGGGACCTCCATT < 41bp 0.529362946508157 0.737529287142979 0.36717662 0.26581812 prediction 0.416332681269645 Functional Gain - PPME1 ENSG00000214517 UTR3 Human protein_coding chr11:73964913 chr11:73964914 . . 0 22 hm5C_associated_SNPs_125580 0 0 1 3 73964904 73964925 mRNA hsa-miR-125b PPME1 miRanda miRanda
9664 chr11 73964914 73964914 1 + C T rs181636068 73964913 + 73964893 73964933 41 ATCTGAGTTCAAATGTCTTCCCAGGCTCAGGGACCTCCATT ATCTGAGTTCAAATGTCTTCCTAGGCTCAGGGACCTCCATT < 41bp 0.529362946508157 0.737529287142979 0.36717662 0.26581812 prediction 0.416332681269645 Functional Gain - PPME1 ENSG00000214517 UTR3 Human protein_coding chr11:73964913 chr11:73964914 . . 0 22 hm5C_associated_SNPs_125580 0 0 1 3 73964902 73964925 mRNA hsa-miR-125a-5p PPME1 miRanda miRanda
9665 chr6 146755848 146755848 1 + C T ESCA 146755847 + 146755827 146755867 41 GGTGCCCAGCTCCCCCGTGTCCGAGTCGGTGCTCTGCACCC GGTGCCCAGCTCCCCCGTGTCTGAGTCGGTGCTCTGCACCC < 41bp 0.534848987919885 0.742961049675177 0.6093404 0.39598078 prediction 0.416224123510583 Functional Gain - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146755847 chr6:146755848 synonymous SNV . 0 22 hm5C_associated_SNPs_125611 0 0 0 2 146755837 146755860 mRNA hsa-miR-29b GRM1 miRanda miRanda
9666 chr6 146755848 146755848 1 + C T ESCA 146755847 + 146755827 146755867 41 GGTGCCCAGCTCCCCCGTGTCCGAGTCGGTGCTCTGCACCC GGTGCCCAGCTCCCCCGTGTCTGAGTCGGTGCTCTGCACCC < 41bp 0.534848987919885 0.742961049675177 0.6093404 0.39598078 prediction 0.416224123510583 Functional Gain - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146755847 chr6:146755848 synonymous SNV . 0 22 hm5C_associated_SNPs_125611 0 0 0 2 146755838 146755860 mRNA hsa-miR-29c GRM1 miRanda miRanda
9667 chr15 76225720 76225720 1 + T C rs17428029 76225718 + 76225698 76225738 41 ATCATGTAGCTGCTGTGTAACATGACCTTAAATAGTCTTCC ATCATGTAGCTGCTGTGTAACACGACCTTAAATAGTCTTCC < 41bp 0.613325132467773 0.821425872785781 0.050475657 0.02848047 prediction 0.416201480636016 Functional Gain - FBXO22 ENSG00000167196 UTR3 Human protein_coding chr15:76225718 chr15:76225720 . . 0 23 hm5C_associated_SNPs_125615 0 0 1 1 76225714 76225739 mRNA hsa-miR-7 FBXO22 miRanda miRanda
9668 chr22 42172208 42172208 1 + C G BLCA 42172207 + 42172187 42172227 41 ATCCAAGTGGGCGGTCTTATCCGAGGCCACTTCCTGCTGAT ATCCAAGTGGGCGGTCTTATCGGAGGCCACTTCCTGCTGAT < 41bp 0.67722641977969 0.885238786185649 0.93961203 0.9540669 prediction 0.416024732811919 Functional Gain - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42172207 chr22:42172208 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_125658 0 0 0 1 42172205 42172226 mRNA hsa-miR-214 MEI1 miRanda miRanda
9669 chr16 22019639 22019639 1 + T C UCEC 22019637 + 22019617 22019657 41 GGGGAGATGGATAAACTGACCATCATCTCAGGATGTCTCTT GGGGAGATGGATAAACTGACCACCATCTCAGGATGTCTCTT < 41bp 0.637968451976597 0.845955777241055 0.19546804 0.11494109 prediction 0.415974650528916 Functional Gain - C16orf52 ENSG00000185716 CDS Human protein_coding chr16:22019637 chr16:22019639 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_125675 0 0 1 1 22019624 22019646 mRNA hsa-miR-143 C16orf52 miRanda miRanda
9670 chr3 50233202 50233202 1 + C T rs561000136 50233201 + 50233181 50233221 41 CAAGTTTGACACCTGTCTACCCAGAGCCAGTGACTGTCCCT CAAGTTTGACACCTGTCTACCTAGAGCCAGTGACTGTCCCT < 41bp 0.518013706065368 0.725992734343908 0.45309088 0.3239221 prediction 0.41595805655708 Functional Gain - GNAT1 ENSG00000114349 UTR3 Human protein_coding chr3:50233201 chr3:50233202 . . 0 22 hm5C_associated_SNPs_125679 0 0 0 4 50233189 50233211 mRNA hsa-miR-149 GNAT1 miRanda miRanda
9671 chr3 50233202 50233202 1 + C T rs561000136 50233201 + 50233181 50233221 41 CAAGTTTGACACCTGTCTACCCAGAGCCAGTGACTGTCCCT CAAGTTTGACACCTGTCTACCTAGAGCCAGTGACTGTCCCT < 41bp 0.518013706065368 0.725992734343908 0.45309088 0.3239221 prediction 0.41595805655708 Functional Gain - GNAT1 ENSG00000114349 UTR3 Human protein_coding chr3:50233201 chr3:50233202 . . 0 22 hm5C_associated_SNPs_125679 0 0 0 4 50233179 50233202 mRNA hsa-miR-379 GNAT1 miRanda miRanda
9672 chr3 50233202 50233202 1 + C T rs561000136 50233201 + 50233181 50233221 41 CAAGTTTGACACCTGTCTACCCAGAGCCAGTGACTGTCCCT CAAGTTTGACACCTGTCTACCTAGAGCCAGTGACTGTCCCT < 41bp 0.518013706065368 0.725992734343908 0.45309088 0.3239221 prediction 0.41595805655708 Functional Gain - GNAT1 ENSG00000114349 UTR3 Human protein_coding chr3:50233201 chr3:50233202 . . 0 22 hm5C_associated_SNPs_125679 0 0 0 4 50233182 50233207 mRNA hsa-miR-330-5p GNAT1 miRanda miRanda
9673 chr3 50233202 50233202 1 + C T rs561000136 50233201 + 50233181 50233221 41 CAAGTTTGACACCTGTCTACCCAGAGCCAGTGACTGTCCCT CAAGTTTGACACCTGTCTACCTAGAGCCAGTGACTGTCCCT < 41bp 0.518013706065368 0.725992734343908 0.45309088 0.3239221 prediction 0.41595805655708 Functional Gain - GNAT1 ENSG00000114349 UTR3 Human protein_coding chr3:50233201 chr3:50233202 . . 0 22 hm5C_associated_SNPs_125679 0 0 0 4 50233188 50233207 mRNA hsa-miR-326 GNAT1 miRanda miRanda
9674 chr11 17336988 17336988 1 + A G BLCA 17336985 + 17336965 17337005 41 GGAGGAGTTTTTGAAAGCCACAGAAAAAAAAGAATTCTTGG GGAGGAGTTTTTGAAAGCCACAGGAAAAAAAGAATTCTTGG < 41bp 0.538090855183476 0.745844195075583 0.82953084 0.78344846 prediction 0.415506679784215 Functional Gain - NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17336985 chr11:17336988 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_125800 0 0 1 1 17336984 17337005 mRNA hsa-miR-186 NUCB2 miRanda miRanda
9675 chr2 220073151 220073151 1 + C T SKCM 220073150 + 220073130 220073170 41 CTTCAATGTCTGTCGTAGAGCCACAACCCGATCTCCGTCCT CTTCAATGTCTGTCGTAGAGCTACAACCCGATCTCCGTCCT < 41bp 0.603380580884429 0.811115631004733 0.045059472 0.0589211 prediction 0.415470100240609 Functional Gain - ZFAND2B ENSG00000158552 CDS Human protein_coding chr2:220073150 chr2:220073151 synonymous SNV . 0 22 hm5C_associated_SNPs_125810 0 0 1 1 220073149 220073170 mRNA hsa-miR-184 ZFAND2B miRanda miRanda
9676 chr14 100992272 100992272 1 + C T UCEC 100992271 + 100992251 100992291 41 CCTGTTCCTCCGGGAAGGCTCCGAGTTCCTGAGCAGCACAG CCTGTTCCTCCGGGAAGGCTCTGAGTTCCTGAGCAGCACAG < 41bp 0.6049533089149 0.812688286178085 0.642812 0.462563 prediction 0.415469954526369 Functional Gain - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100992271 chr14:100992272 synonymous SNV . 0 22 hm5C_associated_SNPs_125811 0 0 0 1 100992263 100992282 mRNA hsa-miR-873 WDR25 miRanda miRanda
9677 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794748 52794770 mRNA hsa-miR-17 ZNF766 miRanda miRanda
9678 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794748 52794770 mRNA hsa-miR-20a ZNF766 miRanda miRanda
9679 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794748 52794770 mRNA hsa-miR-93 ZNF766 miRanda miRanda
9680 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794748 52794770 mRNA hsa-miR-106a ZNF766 miRanda miRanda
9681 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794750 52794770 mRNA hsa-miR-106b ZNF766 miRanda miRanda
9682 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794748 52794769 mRNA hsa-miR-302a ZNF766 miRanda miRanda
9683 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794742 52794769 mRNA hsa-miR-302b ZNF766 miRanda miRanda
9684 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794749 52794769 mRNA hsa-miR-302c ZNF766 miRanda miRanda
9685 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794742 52794769 mRNA hsa-miR-302d ZNF766 miRanda miRanda
9686 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794742 52794769 mRNA hsa-miR-372 ZNF766 miRanda miRanda
9687 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794746 52794769 mRNA hsa-miR-373 ZNF766 miRanda miRanda
9688 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794748 52794770 mRNA hsa-miR-20b ZNF766 miRanda miRanda
9689 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794749 52794769 mRNA hsa-miR-520e ZNF766 miRanda miRanda
9690 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794748 52794769 mRNA hsa-miR-520a-3p ZNF766 miRanda miRanda
9691 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794750 52794769 mRNA hsa-miR-520b ZNF766 miRanda miRanda
9692 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794749 52794769 mRNA hsa-miR-520c-3p ZNF766 miRanda miRanda
9693 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794750 52794770 mRNA hsa-miR-519d ZNF766 miRanda miRanda
9694 chr19 52794750 52794750 1 + A G rs10426029 52794747 + 52794727 52794767 41 ATTGGCTGGGCGCAGTGGCTCACACCTGTAATCCTAGCACT ATTGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACT < 41bp 0.467433816016058 0.707592215598523 0.02344194 0.054701537 prediction 0.415184431197046 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794747 chr19:52794750 . . 0 24 hm5C_associated_SNPs_125878 0 0 0 18 52794746 52794769 mRNA hsa-miR-520d-3p ZNF766 miRanda miRanda
9695 chr20 36396432 36396432 1 + T G rs529268673 36396429 + 36396409 36396449 41 AGCAGGGTCTTCTACAGTGGCTGTTGAAGAGGCTGAAGGTG AGCAGGGTCTTCTACAGTGGCTGGTGAAGAGGCTGAAGGTG < 41bp 0.309571364367664 0.707550053475591 0.26792854 0.53442216 prediction 0.415100106951182 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36396429 chr20:36396432 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_125895 0 0 1 1 36396414 36396436 mRNA hsa-miR-421 CTNNBL1 miRanda miRanda
9696 chr7 150746440 150746440 1 + C T SKCM 150746439 + 150746419 150746459 41 CTATGCCCGTGCTGGGCACTCCCTGGATGACATGCTGCTGG CTATGCCCGTGCTGGGCACTCTCTGGATGACATGCTGCTGG < 41bp 0.463571598351275 0.70748364701723 0.23707658 0.19552463 prediction 0.414967294034459 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150746439 chr7:150746440 synonymous SNV . 0 22 hm5C_associated_SNPs_125925 0 0 1 7 150746437 150746458 mRNA hsa-miR-15a ACCN3 miRanda miRanda
9697 chr7 150746440 150746440 1 + C T SKCM 150746439 + 150746419 150746459 41 CTATGCCCGTGCTGGGCACTCCCTGGATGACATGCTGCTGG CTATGCCCGTGCTGGGCACTCTCTGGATGACATGCTGCTGG < 41bp 0.463571598351275 0.70748364701723 0.23707658 0.19552463 prediction 0.414967294034459 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150746439 chr7:150746440 synonymous SNV . 0 22 hm5C_associated_SNPs_125925 0 0 1 7 150746438 150746458 mRNA hsa-miR-16 ACCN3 miRanda miRanda
9698 chr7 150746440 150746440 1 + C T SKCM 150746439 + 150746419 150746459 41 CTATGCCCGTGCTGGGCACTCCCTGGATGACATGCTGCTGG CTATGCCCGTGCTGGGCACTCTCTGGATGACATGCTGCTGG < 41bp 0.463571598351275 0.70748364701723 0.23707658 0.19552463 prediction 0.414967294034459 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150746439 chr7:150746440 synonymous SNV . 0 22 hm5C_associated_SNPs_125925 0 0 1 7 150746433 150746457 mRNA hsa-miR-103 ACCN3 miRanda miRanda
9699 chr7 150746440 150746440 1 + C T SKCM 150746439 + 150746419 150746459 41 CTATGCCCGTGCTGGGCACTCCCTGGATGACATGCTGCTGG CTATGCCCGTGCTGGGCACTCTCTGGATGACATGCTGCTGG < 41bp 0.463571598351275 0.70748364701723 0.23707658 0.19552463 prediction 0.414967294034459 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150746439 chr7:150746440 synonymous SNV . 0 22 hm5C_associated_SNPs_125925 0 0 1 7 150746433 150746457 mRNA hsa-miR-107 ACCN3 miRanda miRanda
9700 chr7 150746440 150746440 1 + C T SKCM 150746439 + 150746419 150746459 41 CTATGCCCGTGCTGGGCACTCCCTGGATGACATGCTGCTGG CTATGCCCGTGCTGGGCACTCTCTGGATGACATGCTGCTGG < 41bp 0.463571598351275 0.70748364701723 0.23707658 0.19552463 prediction 0.414967294034459 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150746439 chr7:150746440 synonymous SNV . 0 22 hm5C_associated_SNPs_125925 0 0 1 7 150746437 150746458 mRNA hsa-miR-15b ACCN3 miRanda miRanda
9701 chr7 150746440 150746440 1 + C T SKCM 150746439 + 150746419 150746459 41 CTATGCCCGTGCTGGGCACTCCCTGGATGACATGCTGCTGG CTATGCCCGTGCTGGGCACTCTCTGGATGACATGCTGCTGG < 41bp 0.463571598351275 0.70748364701723 0.23707658 0.19552463 prediction 0.414967294034459 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150746439 chr7:150746440 synonymous SNV . 0 22 hm5C_associated_SNPs_125925 0 0 1 7 150746438 150746458 mRNA hsa-miR-195 ACCN3 miRanda miRanda
9702 chr7 150746440 150746440 1 + C T SKCM 150746439 + 150746419 150746459 41 CTATGCCCGTGCTGGGCACTCCCTGGATGACATGCTGCTGG CTATGCCCGTGCTGGGCACTCTCTGGATGACATGCTGCTGG < 41bp 0.463571598351275 0.70748364701723 0.23707658 0.19552463 prediction 0.414967294034459 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150746439 chr7:150746440 synonymous SNV . 0 22 hm5C_associated_SNPs_125925 0 0 1 7 150746437 150746458 mRNA hsa-miR-424 ACCN3 miRanda miRanda
9703 chr3 57545845 57545845 1 + C G rs148742642 57545841 + 57545821 57545861 41 AGGAGGAATGGTAAAATGTTCAGCCCTCCTAGTTATGTTCC AGGAGGAATGGTAAAATGTTCAGCGCTCCTAGTTATGTTCC < 41bp 0.407627109870768 0.707415707555197 0.16078147 0.19458804 prediction 0.414831415110393 Functional Gain - PDE12 ENSG00000174840 UTR3 Human protein_coding chr3:57545841 chr3:57545845 . . 0 25 hm5C_associated_SNPs_125965 0 0 1 1 57545844 57545864 mRNA hsa-miR-873 PDE12 miRanda miRanda
9704 chr22 40802474 40802474 1 + C G THCA 40802470 + 40802450 40802490 41 GCTGATCCAGTCAGAGAACTCGGCCTCCATCTTCAACACGC GCTGATCCAGTCAGAGAACTCGGCGTCCATCTTCAACACGC < 41bp 0.675226554782498 0.882610421849335 0.7244177 0.8807856 prediction 0.414767734133674 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40802470 chr22:40802474 synonymous SNV . 0 25 hm5C_associated_SNPs_125981 0 0 0 1 40802468 40802488 mRNA hsa-miR-653 SGSM3 miRanda miRanda
9705 chr1 113003343 113003343 1 + C A rs143986849 113003342 + 113003322 113003362 41 GCAATGTTAGCAAATGCAAGCCAGAGAGAAGCACTTGAAAA GCAATGTTAGCAAATGCAAGCAAGAGAGAAGCACTTGAAAA < 41bp 0.571264356189667 0.778635958638445 0.36214772 0.82492363 prediction 0.414743204897557 Functional Gain - CTTNBP2NL ENSG00000143079 UTR3 Human protein_coding chr1:113003342 chr1:113003343 . . 0 22 hm5C_associated_SNPs_125987 0 0 0 12 113003334 113003358 mRNA hsa-miR-302a CTTNBP2NL miRanda miRanda
9706 chr1 113003343 113003343 1 + C A rs143986849 113003342 + 113003322 113003362 41 GCAATGTTAGCAAATGCAAGCCAGAGAGAAGCACTTGAAAA GCAATGTTAGCAAATGCAAGCAAGAGAGAAGCACTTGAAAA < 41bp 0.571264356189667 0.778635958638445 0.36214772 0.82492363 prediction 0.414743204897557 Functional Gain - CTTNBP2NL ENSG00000143079 UTR3 Human protein_coding chr1:113003342 chr1:113003343 . . 0 22 hm5C_associated_SNPs_125987 0 0 0 12 113003334 113003358 mRNA hsa-miR-302b CTTNBP2NL miRanda miRanda
9707 chr1 113003343 113003343 1 + C A rs143986849 113003342 + 113003322 113003362 41 GCAATGTTAGCAAATGCAAGCCAGAGAGAAGCACTTGAAAA GCAATGTTAGCAAATGCAAGCAAGAGAGAAGCACTTGAAAA < 41bp 0.571264356189667 0.778635958638445 0.36214772 0.82492363 prediction 0.414743204897557 Functional Gain - CTTNBP2NL ENSG00000143079 UTR3 Human protein_coding chr1:113003342 chr1:113003343 . . 0 22 hm5C_associated_SNPs_125987 0 0 0 12 113003336 113003358 mRNA hsa-miR-302c CTTNBP2NL miRanda miRanda
9708 chr1 113003343 113003343 1 + C A rs143986849 113003342 + 113003322 113003362 41 GCAATGTTAGCAAATGCAAGCCAGAGAGAAGCACTTGAAAA GCAATGTTAGCAAATGCAAGCAAGAGAGAAGCACTTGAAAA < 41bp 0.571264356189667 0.778635958638445 0.36214772 0.82492363 prediction 0.414743204897557 Functional Gain - CTTNBP2NL ENSG00000143079 UTR3 Human protein_coding chr1:113003342 chr1:113003343 . . 0 22 hm5C_associated_SNPs_125987 0 0 0 12 113003333 113003358 mRNA hsa-miR-302d CTTNBP2NL miRanda miRanda
9709 chr1 113003343 113003343 1 + C A rs143986849 113003342 + 113003322 113003362 41 GCAATGTTAGCAAATGCAAGCCAGAGAGAAGCACTTGAAAA GCAATGTTAGCAAATGCAAGCAAGAGAGAAGCACTTGAAAA < 41bp 0.571264356189667 0.778635958638445 0.36214772 0.82492363 prediction 0.414743204897557 Functional Gain - CTTNBP2NL ENSG00000143079 UTR3 Human protein_coding chr1:113003342 chr1:113003343 . . 0 22 hm5C_associated_SNPs_125987 0 0 0 12 113003339 113003358 mRNA hsa-miR-372 CTTNBP2NL miRanda miRanda
9710 chr1 113003343 113003343 1 + C A rs143986849 113003342 + 113003322 113003362 41 GCAATGTTAGCAAATGCAAGCCAGAGAGAAGCACTTGAAAA GCAATGTTAGCAAATGCAAGCAAGAGAGAAGCACTTGAAAA < 41bp 0.571264356189667 0.778635958638445 0.36214772 0.82492363 prediction 0.414743204897557 Functional Gain - CTTNBP2NL ENSG00000143079 UTR3 Human protein_coding chr1:113003342 chr1:113003343 . . 0 22 hm5C_associated_SNPs_125987 0 0 0 12 113003337 113003358 mRNA hsa-miR-373 CTTNBP2NL miRanda miRanda
9711 chr1 113003343 113003343 1 + C A rs143986849 113003342 + 113003322 113003362 41 GCAATGTTAGCAAATGCAAGCCAGAGAGAAGCACTTGAAAA GCAATGTTAGCAAATGCAAGCAAGAGAGAAGCACTTGAAAA < 41bp 0.571264356189667 0.778635958638445 0.36214772 0.82492363 prediction 0.414743204897557 Functional Gain - CTTNBP2NL ENSG00000143079 UTR3 Human protein_coding chr1:113003342 chr1:113003343 . . 0 22 hm5C_associated_SNPs_125987 0 0 0 12 113003339 113003358 mRNA hsa-miR-520e CTTNBP2NL miRanda miRanda
9712 chr1 113003343 113003343 1 + C A rs143986849 113003342 + 113003322 113003362 41 GCAATGTTAGCAAATGCAAGCCAGAGAGAAGCACTTGAAAA GCAATGTTAGCAAATGCAAGCAAGAGAGAAGCACTTGAAAA < 41bp 0.571264356189667 0.778635958638445 0.36214772 0.82492363 prediction 0.414743204897557 Functional Gain - CTTNBP2NL ENSG00000143079 UTR3 Human protein_coding chr1:113003342 chr1:113003343 . . 0 22 hm5C_associated_SNPs_125987 0 0 0 12 113003338 113003358 mRNA hsa-miR-520a-3p CTTNBP2NL miRanda miRanda
9713 chr1 113003343 113003343 1 + C A rs143986849 113003342 + 113003322 113003362 41 GCAATGTTAGCAAATGCAAGCCAGAGAGAAGCACTTGAAAA GCAATGTTAGCAAATGCAAGCAAGAGAGAAGCACTTGAAAA < 41bp 0.571264356189667 0.778635958638445 0.36214772 0.82492363 prediction 0.414743204897557 Functional Gain - CTTNBP2NL ENSG00000143079 UTR3 Human protein_coding chr1:113003342 chr1:113003343 . . 0 22 hm5C_associated_SNPs_125987 0 0 0 12 113003338 113003358 mRNA hsa-miR-520b CTTNBP2NL miRanda miRanda
9714 chr1 113003343 113003343 1 + C A rs143986849 113003342 + 113003322 113003362 41 GCAATGTTAGCAAATGCAAGCCAGAGAGAAGCACTTGAAAA GCAATGTTAGCAAATGCAAGCAAGAGAGAAGCACTTGAAAA < 41bp 0.571264356189667 0.778635958638445 0.36214772 0.82492363 prediction 0.414743204897557 Functional Gain - CTTNBP2NL ENSG00000143079 UTR3 Human protein_coding chr1:113003342 chr1:113003343 . . 0 22 hm5C_associated_SNPs_125987 0 0 0 12 113003337 113003358 mRNA hsa-miR-520c-3p CTTNBP2NL miRanda miRanda
9715 chr1 113003343 113003343 1 + C A rs143986849 113003342 + 113003322 113003362 41 GCAATGTTAGCAAATGCAAGCCAGAGAGAAGCACTTGAAAA GCAATGTTAGCAAATGCAAGCAAGAGAGAAGCACTTGAAAA < 41bp 0.571264356189667 0.778635958638445 0.36214772 0.82492363 prediction 0.414743204897557 Functional Gain - CTTNBP2NL ENSG00000143079 UTR3 Human protein_coding chr1:113003342 chr1:113003343 . . 0 22 hm5C_associated_SNPs_125987 0 0 0 12 113003337 113003358 mRNA hsa-miR-520d-3p CTTNBP2NL miRanda miRanda
9716 chr1 113003343 113003343 1 + C A rs143986849 113003342 + 113003322 113003362 41 GCAATGTTAGCAAATGCAAGCCAGAGAGAAGCACTTGAAAA GCAATGTTAGCAAATGCAAGCAAGAGAGAAGCACTTGAAAA < 41bp 0.571264356189667 0.778635958638445 0.36214772 0.82492363 prediction 0.414743204897557 Functional Gain - CTTNBP2NL ENSG00000143079 UTR3 Human protein_coding chr1:113003342 chr1:113003343 . . 0 22 hm5C_associated_SNPs_125987 0 0 0 12 113003342 113003358 mRNA hsa-miR-302e CTTNBP2NL miRanda miRanda
9717 chr16 23583996 23583996 1 + C G rs569443369 23583995 + 23583975 23584015 41 TTCCATCATCTCCCCGCTCCCCAAGGGCCAACTGCTTCTCA TTCCATCATCTCCCCGCTCCCGAAGGGCCAACTGCTTCTCA < 41bp 0.398786558326344 0.707342338662525 0.86296934 0.9216323 prediction 0.41468467732505 Functional Gain - UBFD1 ENSG00000103353 UTR3 Human protein_coding chr16:23583995 chr16:23583996 . . 0 22 hm5C_associated_SNPs_125998 0 0 1 1 23583984 23584005 mRNA hsa-miR-328 UBFD1 miRanda miRanda
9718 chr1 109321980 109321980 1 + A G UCEC 109321977 + 109321957 109321997 41 TGTCCACTGTCCTGCATGAACTGACCTTTCAGGCAATGGCA TGTCCACTGTCCTGCATGAACTGGCCTTTCAGGCAATGGCA < 41bp 0.469676473979732 0.707308380341264 0.09614664 0.35693824 prediction 0.414616760682528 Functional Gain - STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109321977 chr1:109321980 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_126014 0 0 0 3 109321963 109321984 mRNA hsa-miR-196a STXBP3 miRanda miRanda
9719 chr1 109321980 109321980 1 + A G UCEC 109321977 + 109321957 109321997 41 TGTCCACTGTCCTGCATGAACTGACCTTTCAGGCAATGGCA TGTCCACTGTCCTGCATGAACTGGCCTTTCAGGCAATGGCA < 41bp 0.469676473979732 0.707308380341264 0.09614664 0.35693824 prediction 0.414616760682528 Functional Gain - STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109321977 chr1:109321980 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_126014 0 0 0 3 109321961 109321982 mRNA hsa-miR-223 STXBP3 miRanda miRanda
9720 chr1 109321980 109321980 1 + A G UCEC 109321977 + 109321957 109321997 41 TGTCCACTGTCCTGCATGAACTGACCTTTCAGGCAATGGCA TGTCCACTGTCCTGCATGAACTGGCCTTTCAGGCAATGGCA < 41bp 0.469676473979732 0.707308380341264 0.09614664 0.35693824 prediction 0.414616760682528 Functional Gain - STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109321977 chr1:109321980 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_126014 0 0 0 3 109321968 109321988 mRNA hsa-miR-488 STXBP3 miRanda miRanda
9721 chr2 68622990 68622990 1 + T C rs6725743 68622988 + 68622968 68623008 41 CTCCCCTCCTGAGGGAAGCCCATGGACAAGCTCAGTCCAGG CTCCCCTCCTGAGGGAAGCCCACGGACAAGCTCAGTCCAGG < 41bp 0.602893190763776 0.810016438536774 0.27938116 0.27161038 prediction 0.414246495545996 Functional Gain - PLEK ENSG00000115956 UTR3 Human protein_coding chr2:68622988 chr2:68622990 . . 0 23 hm5C_associated_SNPs_126104 0 0 0 2 68622988 68623008 mRNA hsa-miR-378 PLEK miRanda miRanda
9722 chr2 68622990 68622990 1 + T C rs6725743 68622988 + 68622968 68623008 41 CTCCCCTCCTGAGGGAAGCCCATGGACAAGCTCAGTCCAGG CTCCCCTCCTGAGGGAAGCCCACGGACAAGCTCAGTCCAGG < 41bp 0.602893190763776 0.810016438536774 0.27938116 0.27161038 prediction 0.414246495545996 Functional Gain - PLEK ENSG00000115956 UTR3 Human protein_coding chr2:68622988 chr2:68622990 . . 0 23 hm5C_associated_SNPs_126104 0 0 0 2 68622987 68623008 mRNA hsa-miR-422a PLEK miRanda miRanda
9723 chr6 31107469 31107469 1 + C A LUSC 31107465 + 31107445 31107485 41 ATCCAAGGAATTCCATCTGGCAGCCACCCAGGATGACTGCA ATCCAAGGAATTCCATCTGGCAGCAACCCAGGATGACTGCA < 41bp 0.34015533200626 0.707064318492019 0.1577371 0.34978 prediction 0.414128636984038 Functional Gain - PSORS1C1 ENSG00000204540 CDS Human protein_coding chr6:31107465 chr6:31107469 synonymous SNV . 0 25 hm5C_associated_SNPs_126136 0 0 0 1 31107468 31107489 mRNA hsa-miR-544 PSORS1C1 miRanda miRanda
9724 chr6 17507928 17507928 1 + T C KIRP 17507925 + 17507905 17507945 41 AATGACGCTGCCACCTTTTACACTAACAGGGTCTTAAAGGA AATGACGCTGCCACCTTTTACACCAACAGGGTCTTAAAGGA < 41bp 0.47036996973721 0.707020377412657 0.20180795 0.19384989 prediction 0.414040754825314 Functional Gain - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17507925 chr6:17507928 synonymous SNV . 0 24 hm5C_associated_SNPs_126177 0 0 1 3 17507915 17507937 mRNA hsa-miR-10a CAP2 miRanda miRanda
9725 chr6 17507928 17507928 1 + T C KIRP 17507925 + 17507905 17507945 41 AATGACGCTGCCACCTTTTACACTAACAGGGTCTTAAAGGA AATGACGCTGCCACCTTTTACACCAACAGGGTCTTAAAGGA < 41bp 0.47036996973721 0.707020377412657 0.20180795 0.19384989 prediction 0.414040754825314 Functional Gain - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17507925 chr6:17507928 synonymous SNV . 0 24 hm5C_associated_SNPs_126177 0 0 1 3 17507914 17507937 mRNA hsa-miR-10b CAP2 miRanda miRanda
9726 chr6 17507928 17507928 1 + T C KIRP 17507925 + 17507905 17507945 41 AATGACGCTGCCACCTTTTACACTAACAGGGTCTTAAAGGA AATGACGCTGCCACCTTTTACACCAACAGGGTCTTAAAGGA < 41bp 0.47036996973721 0.707020377412657 0.20180795 0.19384989 prediction 0.414040754825314 Functional Gain - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17507925 chr6:17507928 synonymous SNV . 0 24 hm5C_associated_SNPs_126177 0 0 1 3 17507917 17507938 mRNA hsa-miR-504 CAP2 miRanda miRanda
9727 chr20 6017775 6017775 1 + C T UCEC 6017774 + 6017754 6017794 41 TATAGTTACTATCATTATGGCCGGAAGACTGTTCAGGTGAT TATAGTTACTATCATTATGGCTGGAAGACTGTTCAGGTGAT < 41bp 0.466153053677605 0.707010234226627 0.24097964 0.22049263 prediction 0.414020468453253 Functional Gain - CRLS1 ENSG00000088766 CDS Human protein_coding chr20:6017774 chr20:6017775 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_126185 0 0 1 2 6017766 6017787 mRNA hsa-miR-212 CRLS1 miRanda miRanda
9728 chr20 6017775 6017775 1 + C T UCEC 6017774 + 6017754 6017794 41 TATAGTTACTATCATTATGGCCGGAAGACTGTTCAGGTGAT TATAGTTACTATCATTATGGCTGGAAGACTGTTCAGGTGAT < 41bp 0.466153053677605 0.707010234226627 0.24097964 0.22049263 prediction 0.414020468453253 Functional Gain - CRLS1 ENSG00000088766 CDS Human protein_coding chr20:6017774 chr20:6017775 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_126185 0 0 1 2 6017765 6017787 mRNA hsa-miR-132 CRLS1 miRanda miRanda
9729 chr2 69015013 69015013 1 + C A UCEC 69015012 + 69014992 69015032 41 ATGGGACAGGACTCCTATGTCCTCATGGCCAGCTCTCAGGC ATGGGACAGGACTCCTATGTCATCATGGCCAGCTCTCAGGC < 41bp 0.445019251077502 0.706900010997036 0.056945622 0.20013738 prediction 0.413800021994071 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69015012 chr2:69015013 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_126237 0 0 0 1 69015006 69015029 mRNA hsa-miR-485-5p ARHGAP25 miRanda miRanda
9730 chr5 179264132 179264132 1 + T G rs1060271 179264128 + 179264108 179264148 41 GTTTCACTGAGAGCTGCCTCCTGGTCTCTTCACCACTGTAG GTTTCACTGAGAGCTGCCTCCTGGGCTCTTCACCACTGTAG < 41bp 0.532661401655299 0.739432376150221 0.09488419 0.20477933 prediction 0.413541948989844 Functional Gain - SQSTM1 ENSG00000161010;ENSG00000161011 UTR3 Human other chr5:179264128 chr5:179264132 . . 0 25 hm5C_associated_SNPs_126320 1 0 1 1 179264128 179264149 mRNA hsa-miR-139-5p SQSTM1 miRanda miRanda
9731 chr4 39483194 39483194 1 + C G rs28480393 39483193 + 39483173 39483213 41 TCTGTGCCTGGGGGTCAGGACCGGGCCTGATTTGAGCCTCC TCTGTGCCTGGGGGTCAGGACGGGGCCTGATTTGAGCCTCC < 41bp 0.667209041730759 0.873882317579686 0.9029814 0.9126396 prediction 0.413346551697853 Functional Gain - LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39483193 chr4:39483194 . . 0 22 hm5C_associated_SNPs_126368 0 0 0 2 39483194 39483215 mRNA hsa-miR-28-5p LOC401127 miRanda miRanda
9732 chr4 39483194 39483194 1 + C G rs28480393 39483193 + 39483173 39483213 41 TCTGTGCCTGGGGGTCAGGACCGGGCCTGATTTGAGCCTCC TCTGTGCCTGGGGGTCAGGACGGGGCCTGATTTGAGCCTCC < 41bp 0.667209041730759 0.873882317579686 0.9029814 0.9126396 prediction 0.413346551697853 Functional Gain - LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39483193 chr4:39483194 . . 0 22 hm5C_associated_SNPs_126368 0 0 0 2 39483193 39483215 mRNA hsa-miR-708 LOC401127 miRanda miRanda
9733 chr16 31770723 31770723 1 + T A rs12921028 31770719 + 31770699 31770739 41 AAAAATCAACAAGATAATCTCTGCTTGAGAAAAAGGACCAA AAAAATCAACAAGATAATCTCTGCATGAGAAAAAGGACCAA < 41bp 0.431261430971814 0.706613327482752 0.040992916 0.22170374 prediction 0.413226654965504 Functional Gain - ZNF720 ENSG00000197302 UTR3 Human protein_coding chr16:31770719 chr16:31770723 . . 0 25 hm5C_associated_SNPs_126400 0 0 0 4 31770716 31770740 mRNA hsa-miR-133a ZNF720 miRanda miRanda
9734 chr16 31770723 31770723 1 + T A rs12921028 31770719 + 31770699 31770739 41 AAAAATCAACAAGATAATCTCTGCTTGAGAAAAAGGACCAA AAAAATCAACAAGATAATCTCTGCATGAGAAAAAGGACCAA < 41bp 0.431261430971814 0.706613327482752 0.040992916 0.22170374 prediction 0.413226654965504 Functional Gain - ZNF720 ENSG00000197302 UTR3 Human protein_coding chr16:31770719 chr16:31770723 . . 0 25 hm5C_associated_SNPs_126400 0 0 0 4 31770720 31770742 mRNA hsa-miR-9 ZNF720 miRanda miRanda
9735 chr16 31770723 31770723 1 + T A rs12921028 31770719 + 31770699 31770739 41 AAAAATCAACAAGATAATCTCTGCTTGAGAAAAAGGACCAA AAAAATCAACAAGATAATCTCTGCATGAGAAAAAGGACCAA < 41bp 0.431261430971814 0.706613327482752 0.040992916 0.22170374 prediction 0.413226654965504 Functional Gain - ZNF720 ENSG00000197302 UTR3 Human protein_coding chr16:31770719 chr16:31770723 . . 0 25 hm5C_associated_SNPs_126400 0 0 0 4 31770716 31770740 mRNA hsa-miR-133b ZNF720 miRanda miRanda
9736 chr16 31770723 31770723 1 + T A rs12921028 31770719 + 31770699 31770739 41 AAAAATCAACAAGATAATCTCTGCTTGAGAAAAAGGACCAA AAAAATCAACAAGATAATCTCTGCATGAGAAAAAGGACCAA < 41bp 0.431261430971814 0.706613327482752 0.040992916 0.22170374 prediction 0.413226654965504 Functional Gain - ZNF720 ENSG00000197302 UTR3 Human protein_coding chr16:31770719 chr16:31770723 . . 0 25 hm5C_associated_SNPs_126400 0 0 0 4 31770704 31770727 mRNA hsa-miR-421 ZNF720 miRanda miRanda
9737 chr12 32481055 32481055 1 + A G STAD 32481052 + 32481032 32481072 41 GCCTGAAAGGGCCCGATGATCCCAGAGGACTTTTGTCCCCA GCCTGAAAGGGCCCGATGATCCCGGAGGACTTTTGTCCCCA < 41bp 0.608683671117587 0.815223508068051 0.41234353 0.8556216 prediction 0.413079673900927 Functional Gain - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32481052 chr12:32481055 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_126446 0 0 0 2 32481035 32481059 mRNA hsa-miR-330-5p BICD1 miRanda miRanda
9738 chr12 32481055 32481055 1 + A G STAD 32481052 + 32481032 32481072 41 GCCTGAAAGGGCCCGATGATCCCAGAGGACTTTTGTCCCCA GCCTGAAAGGGCCCGATGATCCCGGAGGACTTTTGTCCCCA < 41bp 0.608683671117587 0.815223508068051 0.41234353 0.8556216 prediction 0.413079673900927 Functional Gain - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32481052 chr12:32481055 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_126446 0 0 0 2 32481040 32481059 mRNA hsa-miR-326 BICD1 miRanda miRanda
9739 chr5 147695435 147695435 1 + C A rs547552265 147695431 + 147695411 147695451 41 ACAAACCCATGCCTCACTGACAGACCAGCATTTTTTTTTTA ACAAACCCATGCCTCACTGACAGAACAGCATTTTTTTTTTA < 41bp 0.369816724363767 0.70648557093341 0.68381727 0.49803954 prediction 0.41297114186682 Functional Gain - LOC102546294 ENSG00000247199 ncRNA_intronic Human antisense chr5:147695431 chr5:147695435 . . 0 25 hm5C_associated_SNPs_126474 0 0 0 1 147695419 147695440 mRNA hsa-miR-138 SPINK7 miRanda miRanda
9740 chr6 43272822 43272822 1 + T C rs529760254 43272820 + 43272800 43272840 41 CCATTAACTTGCTGTGTGACCTTGGGCATGTGGCTTTCCCT CCATTAACTTGCTGTGTGACCTCGGGCATGTGGCTTTCCCT < 41bp 0.567671856366122 0.774014663027953 0.35941067 0.55389464 prediction 0.412685613323662 Functional Gain - SLC22A7 ENSG00000137204 UTR3 Human protein_coding chr6:43272820 chr6:43272822 . . 0 23 hm5C_associated_SNPs_126548 0 0 0 1 43272803 43272823 mRNA hsa-miR-124 SLC22A7 miRanda miRanda
9741 chr21 47660785 47660785 1 + T A HNSC 47660783 + 47660763 47660803 41 CAAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCGCA CAAACACTGCGCCAAGAGCTCCACAGCAGAAGCTCCTCGCA < 41bp 0.495769624696701 0.706281964955803 0.118138015 0.0797762 prediction 0.412563929911606 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660783 chr21:47660785 nonsynonymous SNV 0.119 0 23 hm5C_associated_SNPs_126573 0 0 1 4 47660779 47660800 mRNA hsa-miR-28-5p MCM3APAS miRanda miRanda
9742 chr21 47660785 47660785 1 + T A HNSC 47660783 + 47660763 47660803 41 CAAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCGCA CAAACACTGCGCCAAGAGCTCCACAGCAGAAGCTCCTCGCA < 41bp 0.495769624696701 0.706281964955803 0.118138015 0.0797762 prediction 0.412563929911606 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660783 chr21:47660785 nonsynonymous SNV 0.119 0 23 hm5C_associated_SNPs_126573 0 0 1 4 47660765 47660786 mRNA hsa-miR-28-5p MCM3APAS miRanda miRanda
9743 chr21 47660785 47660785 1 + T A HNSC 47660783 + 47660763 47660803 41 CAAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCGCA CAAACACTGCGCCAAGAGCTCCACAGCAGAAGCTCCTCGCA < 41bp 0.495769624696701 0.706281964955803 0.118138015 0.0797762 prediction 0.412563929911606 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660783 chr21:47660785 nonsynonymous SNV 0.119 0 23 hm5C_associated_SNPs_126573 0 0 1 4 47660778 47660800 mRNA hsa-miR-708 MCM3APAS miRanda miRanda
9744 chr21 47660785 47660785 1 + T A HNSC 47660783 + 47660763 47660803 41 CAAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCGCA CAAACACTGCGCCAAGAGCTCCACAGCAGAAGCTCCTCGCA < 41bp 0.495769624696701 0.706281964955803 0.118138015 0.0797762 prediction 0.412563929911606 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660783 chr21:47660785 nonsynonymous SNV 0.119 0 23 hm5C_associated_SNPs_126573 0 0 1 4 47660764 47660786 mRNA hsa-miR-708 MCM3APAS miRanda miRanda
9745 chr11 64084019 64084019 1 + C G rs544054283 64084015 + 64083995 64084035 41 CCTCAGGGGGTAGGAGAGCACTGCCTCTATGCCCTGCAGAG CCTCAGGGGGTAGGAGAGCACTGCGTCTATGCCCTGCAGAG < 41bp 0.629108132645266 0.835387800526172 0.017900854 0.098520845 prediction 0.412559335761811 Functional Gain - ESRRA;TRMT112 ENSG00000173113;ENSG00000173153 UTR3 Human other chr11:64084015 chr11:64084019 . . 0 25 hm5C_associated_SNPs_126574 0 0 0 5 64083998 64084020 mRNA hsa-miR-34a ESRRA miRanda miRanda
9746 chr11 64084019 64084019 1 + C G rs544054283 64084015 + 64083995 64084035 41 CCTCAGGGGGTAGGAGAGCACTGCCTCTATGCCCTGCAGAG CCTCAGGGGGTAGGAGAGCACTGCGTCTATGCCCTGCAGAG < 41bp 0.629108132645266 0.835387800526172 0.017900854 0.098520845 prediction 0.412559335761811 Functional Gain - ESRRA;TRMT112 ENSG00000173113;ENSG00000173153 UTR3 Human other chr11:64084015 chr11:64084019 . . 0 25 hm5C_associated_SNPs_126574 0 0 0 5 64084019 64084041 mRNA hsa-miR-137 ESRRA miRanda miRanda
9747 chr11 64084019 64084019 1 + C G rs544054283 64084015 + 64083995 64084035 41 CCTCAGGGGGTAGGAGAGCACTGCCTCTATGCCCTGCAGAG CCTCAGGGGGTAGGAGAGCACTGCGTCTATGCCCTGCAGAG < 41bp 0.629108132645266 0.835387800526172 0.017900854 0.098520845 prediction 0.412559335761811 Functional Gain - ESRRA;TRMT112 ENSG00000173113;ENSG00000173153 UTR3 Human other chr11:64084015 chr11:64084019 . . 0 25 hm5C_associated_SNPs_126574 0 0 0 5 64083998 64084020 mRNA hsa-miR-34c-5p ESRRA miRanda miRanda
9748 chr11 64084019 64084019 1 + C G rs544054283 64084015 + 64083995 64084035 41 CCTCAGGGGGTAGGAGAGCACTGCCTCTATGCCCTGCAGAG CCTCAGGGGGTAGGAGAGCACTGCGTCTATGCCCTGCAGAG < 41bp 0.629108132645266 0.835387800526172 0.017900854 0.098520845 prediction 0.412559335761811 Functional Gain - ESRRA;TRMT112 ENSG00000173113;ENSG00000173153 UTR3 Human other chr11:64084015 chr11:64084019 . . 0 25 hm5C_associated_SNPs_126574 0 0 0 5 64083999 64084020 mRNA hsa-miR-449a ESRRA miRanda miRanda
9749 chr11 64084019 64084019 1 + C G rs544054283 64084015 + 64083995 64084035 41 CCTCAGGGGGTAGGAGAGCACTGCCTCTATGCCCTGCAGAG CCTCAGGGGGTAGGAGAGCACTGCGTCTATGCCCTGCAGAG < 41bp 0.629108132645266 0.835387800526172 0.017900854 0.098520845 prediction 0.412559335761811 Functional Gain - ESRRA;TRMT112 ENSG00000173113;ENSG00000173153 UTR3 Human other chr11:64084015 chr11:64084019 . . 0 25 hm5C_associated_SNPs_126574 0 0 0 5 64083999 64084020 mRNA hsa-miR-449b ESRRA miRanda miRanda
9750 chr1 111785979 111785979 1 + T C rs76388937 111785977 + 111785957 111785997 41 TTCCTGACTTCCTCTTAGATCATAGATTGGACCTGGTTTTG TTCCTGACTTCCTCTTAGATCACAGATTGGACCTGGTTTTG < 41bp 0.488083118079596 0.706059190715637 0.16086689 0.14353174 prediction 0.412118381431275 Functional Gain - CHI3L2 ENSG00000064886 UTR3 Human protein_coding chr1:111785977 chr1:111785979 . . 0 23 hm5C_associated_SNPs_126699 0 0 0 1 111785978 111786000 mRNA hsa-miR-495 CHI3L2 miRanda miRanda
9751 chr21 27066109 27066109 1 + C T THYM 27066108 + 27066088 27066128 41 GAGATGATAGATTTCAATATCCGGATCAAAAATGTGACAAG GAGATGATAGATTTCAATATCTGGATCAAAAATGTGACAAG < 41bp 0.61796646512078 0.823927997607961 0.67084664 0.2263985 prediction 0.411923064974362 Functional Gain - JAM2 ENSG00000154721 CDS Human protein_coding chr21:27066108 chr21:27066109 nonsynonymous SNV 0.979 2 22 hm5C_associated_SNPs_126742 0 0 1 2 27066105 27066125 mRNA hsa-miR-23a JAM2 miRanda miRanda
9752 chr21 27066109 27066109 1 + C T THYM 27066108 + 27066088 27066128 41 GAGATGATAGATTTCAATATCCGGATCAAAAATGTGACAAG GAGATGATAGATTTCAATATCTGGATCAAAAATGTGACAAG < 41bp 0.61796646512078 0.823927997607961 0.67084664 0.2263985 prediction 0.411923064974362 Functional Gain - JAM2 ENSG00000154721 CDS Human protein_coding chr21:27066108 chr21:27066109 nonsynonymous SNV 0.979 2 22 hm5C_associated_SNPs_126742 0 0 1 2 27066105 27066125 mRNA hsa-miR-23b JAM2 miRanda miRanda
9753 chr1 212792438 212792438 1 + A G COAD 212792435 + 212792415 212792455 41 ACCTGCATATGGGCTGTTGACTCATGCAAATGAGGTATCTG ACCTGCATATGGGCTGTTGACTCGTGCAAATGAGGTATCTG < 41bp 0.474141947408731 0.70590117987957 0.32853866 0.25230682 prediction 0.411802359759139 Functional Gain - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212792435 chr1:212792438 synonymous SNV . 0 24 hm5C_associated_SNPs_126769 0 0 1 2 212792420 212792443 mRNA hsa-miR-153 ATF3 miRanda miRanda
9754 chr1 212792438 212792438 1 + A G COAD 212792435 + 212792415 212792455 41 ACCTGCATATGGGCTGTTGACTCATGCAAATGAGGTATCTG ACCTGCATATGGGCTGTTGACTCGTGCAAATGAGGTATCTG < 41bp 0.474141947408731 0.70590117987957 0.32853866 0.25230682 prediction 0.411802359759139 Functional Gain - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212792435 chr1:212792438 synonymous SNV . 0 24 hm5C_associated_SNPs_126769 0 0 1 2 212792432 212792453 mRNA hsa-miR-875-5p ATF3 miRanda miRanda
9755 chr8 92330587 92330587 1 + C A LUAD 92330586 + 92330566 92330606 41 AATGAAAATGCCATATATATCCGGACCACTTGGATTCTTTT AATGAAAATGCCATATATATCAGGACCACTTGGATTCTTTT < 41bp 0.445782129183649 0.705892993938959 0.6363467 0.9055543 prediction 0.411785987877918 Functional Gain - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92330586 chr8:92330587 synonymous SNV . 0 22 hm5C_associated_SNPs_126773 0 0 0 1 92330583 92330606 mRNA hsa-miR-186 SLC26A7 miRanda miRanda
9756 chr1 156347926 156347926 1 + C T SKCM 156347925 + 156347905 156347945 41 GAGTTTGTGCTCCTTCATCTCCTGGGGGTGAGAGTCTGGGG GAGTTTGTGCTCCTTCATCTCTTGGGGGTGAGAGTCTGGGG < 41bp 0.597820060535823 0.803694233652991 0.39922878 0.19675708 prediction 0.411748346234334 Functional Gain - RHBG ENSG00000132677 CDS Human protein_coding chr1:156347925 chr1:156347926 synonymous SNV . 0 22 hm5C_associated_SNPs_126784 0 0 1 1 156347906 156347926 mRNA hsa-miR-143 RHBG miRanda miRanda
9757 chr13 80107501 80107501 1 + T C UCEC 80107498 + 80107478 80107518 41 TTTTATCCCGTGCCACCTCCCTATAGCGTTGCTACCTCTCT TTTTATCCCGTGCCACCTCCCTACAGCGTTGCTACCTCTCT < 41bp 0.563370346475818 0.769083563926692 0.106989205 0.39535654 prediction 0.411426434901748 Functional Gain - NDFIP2 ENSG00000102471 CDS Human protein_coding chr13:80107498 chr13:80107501 synonymous SNV . 0 24 hm5C_associated_SNPs_126847 0 0 1 9 80107494 80107516 mRNA hsa-let-7a NDFIP2 miRanda miRanda
9758 chr13 80107501 80107501 1 + T C UCEC 80107498 + 80107478 80107518 41 TTTTATCCCGTGCCACCTCCCTATAGCGTTGCTACCTCTCT TTTTATCCCGTGCCACCTCCCTACAGCGTTGCTACCTCTCT < 41bp 0.563370346475818 0.769083563926692 0.106989205 0.39535654 prediction 0.411426434901748 Functional Gain - NDFIP2 ENSG00000102471 CDS Human protein_coding chr13:80107498 chr13:80107501 synonymous SNV . 0 24 hm5C_associated_SNPs_126847 0 0 1 9 80107494 80107516 mRNA hsa-let-7b NDFIP2 miRanda miRanda
9759 chr13 80107501 80107501 1 + T C UCEC 80107498 + 80107478 80107518 41 TTTTATCCCGTGCCACCTCCCTATAGCGTTGCTACCTCTCT TTTTATCCCGTGCCACCTCCCTACAGCGTTGCTACCTCTCT < 41bp 0.563370346475818 0.769083563926692 0.106989205 0.39535654 prediction 0.411426434901748 Functional Gain - NDFIP2 ENSG00000102471 CDS Human protein_coding chr13:80107498 chr13:80107501 synonymous SNV . 0 24 hm5C_associated_SNPs_126847 0 0 1 9 80107494 80107516 mRNA hsa-let-7c NDFIP2 miRanda miRanda
9760 chr13 80107501 80107501 1 + T C UCEC 80107498 + 80107478 80107518 41 TTTTATCCCGTGCCACCTCCCTATAGCGTTGCTACCTCTCT TTTTATCCCGTGCCACCTCCCTACAGCGTTGCTACCTCTCT < 41bp 0.563370346475818 0.769083563926692 0.106989205 0.39535654 prediction 0.411426434901748 Functional Gain - NDFIP2 ENSG00000102471 CDS Human protein_coding chr13:80107498 chr13:80107501 synonymous SNV . 0 24 hm5C_associated_SNPs_126847 0 0 1 9 80107496 80107516 mRNA hsa-let-7d NDFIP2 miRanda miRanda
9761 chr13 80107501 80107501 1 + T C UCEC 80107498 + 80107478 80107518 41 TTTTATCCCGTGCCACCTCCCTATAGCGTTGCTACCTCTCT TTTTATCCCGTGCCACCTCCCTACAGCGTTGCTACCTCTCT < 41bp 0.563370346475818 0.769083563926692 0.106989205 0.39535654 prediction 0.411426434901748 Functional Gain - NDFIP2 ENSG00000102471 CDS Human protein_coding chr13:80107498 chr13:80107501 synonymous SNV . 0 24 hm5C_associated_SNPs_126847 0 0 1 9 80107494 80107516 mRNA hsa-let-7e NDFIP2 miRanda miRanda
9762 chr13 80107501 80107501 1 + T C UCEC 80107498 + 80107478 80107518 41 TTTTATCCCGTGCCACCTCCCTATAGCGTTGCTACCTCTCT TTTTATCCCGTGCCACCTCCCTACAGCGTTGCTACCTCTCT < 41bp 0.563370346475818 0.769083563926692 0.106989205 0.39535654 prediction 0.411426434901748 Functional Gain - NDFIP2 ENSG00000102471 CDS Human protein_coding chr13:80107498 chr13:80107501 synonymous SNV . 0 24 hm5C_associated_SNPs_126847 0 0 1 9 80107496 80107516 mRNA hsa-let-7f NDFIP2 miRanda miRanda
9763 chr13 80107501 80107501 1 + T C UCEC 80107498 + 80107478 80107518 41 TTTTATCCCGTGCCACCTCCCTATAGCGTTGCTACCTCTCT TTTTATCCCGTGCCACCTCCCTACAGCGTTGCTACCTCTCT < 41bp 0.563370346475818 0.769083563926692 0.106989205 0.39535654 prediction 0.411426434901748 Functional Gain - NDFIP2 ENSG00000102471 CDS Human protein_coding chr13:80107498 chr13:80107501 synonymous SNV . 0 24 hm5C_associated_SNPs_126847 0 0 1 9 80107494 80107516 mRNA hsa-miR-98 NDFIP2 miRanda miRanda
9764 chr13 80107501 80107501 1 + T C UCEC 80107498 + 80107478 80107518 41 TTTTATCCCGTGCCACCTCCCTATAGCGTTGCTACCTCTCT TTTTATCCCGTGCCACCTCCCTACAGCGTTGCTACCTCTCT < 41bp 0.563370346475818 0.769083563926692 0.106989205 0.39535654 prediction 0.411426434901748 Functional Gain - NDFIP2 ENSG00000102471 CDS Human protein_coding chr13:80107498 chr13:80107501 synonymous SNV . 0 24 hm5C_associated_SNPs_126847 0 0 1 9 80107494 80107516 mRNA hsa-let-7g NDFIP2 miRanda miRanda
9765 chr13 80107501 80107501 1 + T C UCEC 80107498 + 80107478 80107518 41 TTTTATCCCGTGCCACCTCCCTATAGCGTTGCTACCTCTCT TTTTATCCCGTGCCACCTCCCTACAGCGTTGCTACCTCTCT < 41bp 0.563370346475818 0.769083563926692 0.106989205 0.39535654 prediction 0.411426434901748 Functional Gain - NDFIP2 ENSG00000102471 CDS Human protein_coding chr13:80107498 chr13:80107501 synonymous SNV . 0 24 hm5C_associated_SNPs_126847 0 0 1 9 80107494 80107516 mRNA hsa-let-7i NDFIP2 miRanda miRanda
9766 chr11 77778857 77778857 1 + T C rs567384541 77778855 + 77778835 77778875 41 CTACCTCCTGAGCACCAATTCCTGGATTCCAGTCACTGGCT CTACCTCCTGAGCACCAATTCCCGGATTCCAGTCACTGGCT < 41bp 0.555808858638635 0.761454096385597 0.15052462 0.1999344 prediction 0.411290475493924 Functional Gain - THRSP ENSG00000151365 UTR3 Human protein_coding chr11:77778855 chr11:77778857 . . 0 23 hm5C_associated_SNPs_126885 0 0 0 1 77778851 77778871 mRNA hsa-miR-134 THRSP miRanda miRanda
9767 chr6 44198152 44198152 1 + C T KIRC 44198151 + 44198131 44198171 41 CTGCCTGCCAGCTACACGGCCCCCATCATGAGTGGCCAGGG CTGCCTGCCAGCTACACGGCCTCCATCATGAGTGGCCAGGG < 41bp 0.423601735954213 0.705584680204157 0.012355775 0.9157652 prediction 0.411169360408315 Functional Gain - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44198151 chr6:44198152 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_126914 0 0 1 1 44198141 44198162 mRNA hsa-miR-433 SLC29A1 miRanda miRanda
9768 chr11 118849710 118849710 1 + C A LUAD 118849706 + 118849686 118849726 41 CCTCTGGATGTGGGTAAATCCCAACATTGTGTATCCCCCTG CCTCTGGATGTGGGTAAATCCCAAAATTGTGTATCCCCCTG < 41bp 0.290618806319611 0.705576973874683 0.11139202 0.22443074 prediction 0.411153947749367 Functional Gain - FOXR1 ENSG00000176302 CDS Human protein_coding chr11:118849706 chr11:118849710 nonsynonymous SNV 0.896 3 25 hm5C_associated_SNPs_126921 0 0 0 1 118849693 118849713 mRNA hsa-miR-299-3p FOXR1 miRanda miRanda
9769 chrX 118717179 118717179 1 + T A LUAD 118717177 + 118717157 118717197 41 ACAAACGGGAATATGAAAAGCGTGTTTCTGCAATAGTAGAA ACAAACGGGAATATGAAAAGCGAGTTTCTGCAATAGTAGAA < 41bp 0.495907418544326 0.705567629352452 0.3671981 0.35406435 prediction 0.411135258704905 Functional Gain - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118717177 chrX:118717179 synonymous SNV . 0 23 hm5C_associated_SNPs_126929 0 0 1 6 118717170 118717191 mRNA hsa-miR-25 UBE2A miRanda miRanda
9770 chrX 118717179 118717179 1 + T A LUAD 118717177 + 118717157 118717197 41 ACAAACGGGAATATGAAAAGCGTGTTTCTGCAATAGTAGAA ACAAACGGGAATATGAAAAGCGAGTTTCTGCAATAGTAGAA < 41bp 0.495907418544326 0.705567629352452 0.3671981 0.35406435 prediction 0.411135258704905 Functional Gain - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118717177 chrX:118717179 synonymous SNV . 0 23 hm5C_associated_SNPs_126929 0 0 1 6 118717170 118717191 mRNA hsa-miR-32 UBE2A miRanda miRanda
9771 chrX 118717179 118717179 1 + T A LUAD 118717177 + 118717157 118717197 41 ACAAACGGGAATATGAAAAGCGTGTTTCTGCAATAGTAGAA ACAAACGGGAATATGAAAAGCGAGTTTCTGCAATAGTAGAA < 41bp 0.495907418544326 0.705567629352452 0.3671981 0.35406435 prediction 0.411135258704905 Functional Gain - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118717177 chrX:118717179 synonymous SNV . 0 23 hm5C_associated_SNPs_126929 0 0 1 6 118717170 118717191 mRNA hsa-miR-92a UBE2A miRanda miRanda
9772 chrX 118717179 118717179 1 + T A LUAD 118717177 + 118717157 118717197 41 ACAAACGGGAATATGAAAAGCGTGTTTCTGCAATAGTAGAA ACAAACGGGAATATGAAAAGCGAGTTTCTGCAATAGTAGAA < 41bp 0.495907418544326 0.705567629352452 0.3671981 0.35406435 prediction 0.411135258704905 Functional Gain - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118717177 chrX:118717179 synonymous SNV . 0 23 hm5C_associated_SNPs_126929 0 0 1 6 118717170 118717191 mRNA hsa-miR-363 UBE2A miRanda miRanda
9773 chrX 118717179 118717179 1 + T A LUAD 118717177 + 118717157 118717197 41 ACAAACGGGAATATGAAAAGCGTGTTTCTGCAATAGTAGAA ACAAACGGGAATATGAAAAGCGAGTTTCTGCAATAGTAGAA < 41bp 0.495907418544326 0.705567629352452 0.3671981 0.35406435 prediction 0.411135258704905 Functional Gain - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118717177 chrX:118717179 synonymous SNV . 0 23 hm5C_associated_SNPs_126929 0 0 1 6 118717170 118717191 mRNA hsa-miR-367 UBE2A miRanda miRanda
9774 chrX 118717179 118717179 1 + T A LUAD 118717177 + 118717157 118717197 41 ACAAACGGGAATATGAAAAGCGTGTTTCTGCAATAGTAGAA ACAAACGGGAATATGAAAAGCGAGTTTCTGCAATAGTAGAA < 41bp 0.495907418544326 0.705567629352452 0.3671981 0.35406435 prediction 0.411135258704905 Functional Gain - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118717177 chrX:118717179 synonymous SNV . 0 23 hm5C_associated_SNPs_126929 0 0 1 6 118717170 118717191 mRNA hsa-miR-92b UBE2A miRanda miRanda
9775 chr8 30608942 30608942 1 + C T rs199647078 30608941 + 30608921 30608961 41 GATTTTCTTTTGCTTTGTGGCCGGATTTTGCTACTGCTTGC GATTTTCTTTTGCTTTGTGGCTGGATTTTGCTACTGCTTGC < 41bp 0.538754180695106 0.744264500225286 0.55425465 0.3568377 prediction 0.41102063906036 Functional Gain - UBXN8 ENSG00000104691 ncRNA_exonic Human protein_coding chr8:30608941 chr8:30608942 . 0.981 0 22 hm5C_associated_SNPs_126962 0 0 1 1 30608932 30608956 mRNA hsa-miR-454 UBXN8 miRanda miRanda
9776 chr6 131602968 131602968 1 + T C rs17574609 131602965 + 131602945 131602985 41 GTGCTGTTTAAGTTAAGTTTCTCTGGTGCAATCTGTGAAGA GTGCTGTTTAAGTTAAGTTTCTCCGGTGCAATCTGTGAAGA < 41bp 0.49212431559159 0.705347428729104 0.050300717 0.05408916 prediction 0.410694857458207 Functional Gain - AKAP7 ENSG00000118507 UTR3 Human protein_coding chr6:131602965 chr6:131602968 . . 0 24 hm5C_associated_SNPs_127047 0 0 0 7 131602956 131602977 mRNA hsa-miR-25 AKAP7 miRanda miRanda
9777 chr6 131602968 131602968 1 + T C rs17574609 131602965 + 131602945 131602985 41 GTGCTGTTTAAGTTAAGTTTCTCTGGTGCAATCTGTGAAGA GTGCTGTTTAAGTTAAGTTTCTCCGGTGCAATCTGTGAAGA < 41bp 0.49212431559159 0.705347428729104 0.050300717 0.05408916 prediction 0.410694857458207 Functional Gain - AKAP7 ENSG00000118507 UTR3 Human protein_coding chr6:131602965 chr6:131602968 . . 0 24 hm5C_associated_SNPs_127047 0 0 0 7 131602956 131602977 mRNA hsa-miR-32 AKAP7 miRanda miRanda
9778 chr6 131602968 131602968 1 + T C rs17574609 131602965 + 131602945 131602985 41 GTGCTGTTTAAGTTAAGTTTCTCTGGTGCAATCTGTGAAGA GTGCTGTTTAAGTTAAGTTTCTCCGGTGCAATCTGTGAAGA < 41bp 0.49212431559159 0.705347428729104 0.050300717 0.05408916 prediction 0.410694857458207 Functional Gain - AKAP7 ENSG00000118507 UTR3 Human protein_coding chr6:131602965 chr6:131602968 . . 0 24 hm5C_associated_SNPs_127047 0 0 0 7 131602956 131602977 mRNA hsa-miR-92a AKAP7 miRanda miRanda
9779 chr6 131602968 131602968 1 + T C rs17574609 131602965 + 131602945 131602985 41 GTGCTGTTTAAGTTAAGTTTCTCTGGTGCAATCTGTGAAGA GTGCTGTTTAAGTTAAGTTTCTCCGGTGCAATCTGTGAAGA < 41bp 0.49212431559159 0.705347428729104 0.050300717 0.05408916 prediction 0.410694857458207 Functional Gain - AKAP7 ENSG00000118507 UTR3 Human protein_coding chr6:131602965 chr6:131602968 . . 0 24 hm5C_associated_SNPs_127047 0 0 0 7 131602956 131602977 mRNA hsa-miR-363 AKAP7 miRanda miRanda
9780 chr6 131602968 131602968 1 + T C rs17574609 131602965 + 131602945 131602985 41 GTGCTGTTTAAGTTAAGTTTCTCTGGTGCAATCTGTGAAGA GTGCTGTTTAAGTTAAGTTTCTCCGGTGCAATCTGTGAAGA < 41bp 0.49212431559159 0.705347428729104 0.050300717 0.05408916 prediction 0.410694857458207 Functional Gain - AKAP7 ENSG00000118507 UTR3 Human protein_coding chr6:131602965 chr6:131602968 . . 0 24 hm5C_associated_SNPs_127047 0 0 0 7 131602956 131602977 mRNA hsa-miR-367 AKAP7 miRanda miRanda
9781 chr6 131602968 131602968 1 + T C rs17574609 131602965 + 131602945 131602985 41 GTGCTGTTTAAGTTAAGTTTCTCTGGTGCAATCTGTGAAGA GTGCTGTTTAAGTTAAGTTTCTCCGGTGCAATCTGTGAAGA < 41bp 0.49212431559159 0.705347428729104 0.050300717 0.05408916 prediction 0.410694857458207 Functional Gain - AKAP7 ENSG00000118507 UTR3 Human protein_coding chr6:131602965 chr6:131602968 . . 0 24 hm5C_associated_SNPs_127047 0 0 0 7 131602945 131602968 mRNA hsa-miR-146b-5p AKAP7 miRanda miRanda
9782 chr6 131602968 131602968 1 + T C rs17574609 131602965 + 131602945 131602985 41 GTGCTGTTTAAGTTAAGTTTCTCTGGTGCAATCTGTGAAGA GTGCTGTTTAAGTTAAGTTTCTCCGGTGCAATCTGTGAAGA < 41bp 0.49212431559159 0.705347428729104 0.050300717 0.05408916 prediction 0.410694857458207 Functional Gain - AKAP7 ENSG00000118507 UTR3 Human protein_coding chr6:131602965 chr6:131602968 . . 0 24 hm5C_associated_SNPs_127047 0 0 0 7 131602956 131602977 mRNA hsa-miR-92b AKAP7 miRanda miRanda
9783 chr5 37064848 37064848 1 + C T LUAD 37064847 + 37064827 37064867 41 GAGGCTAAGCGCCGTGATGGCCGCAAACTGGTGCCTTGGGT GAGGCTAAGCGCCGTGATGGCTGCAAACTGGTGCCTTGGGT < 41bp 0.575141943079812 0.780460096228699 0.37447983 0.33777255 prediction 0.410636306297775 Functional Gain - NIPBL ENSG00000164190 CDS Human protein_coding chr5:37064847 chr5:37064848 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_127064 0 0 1 2 37064846 37064864 mRNA hsa-miR-124 NIPBL miRanda miRanda
9784 chr5 37064848 37064848 1 + C T LUAD 37064847 + 37064827 37064867 41 GAGGCTAAGCGCCGTGATGGCCGCAAACTGGTGCCTTGGGT GAGGCTAAGCGCCGTGATGGCTGCAAACTGGTGCCTTGGGT < 41bp 0.575141943079812 0.780460096228699 0.37447983 0.33777255 prediction 0.410636306297775 Functional Gain - NIPBL ENSG00000164190 CDS Human protein_coding chr5:37064847 chr5:37064848 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_127064 0 0 1 2 37064844 37064864 mRNA hsa-miR-506 NIPBL miRanda miRanda
9785 chr4 115544637 115544637 1 + C A COAD 115544636 + 115544616 115544656 41 ATGAAAAATACCGGTGTTTACCTCATTTCCAGATTAGGGGT ATGAAAAATACCGGTGTTTACATCATTTCCAGATTAGGGGT < 41bp 0.444717337400093 0.70505935632616 0.023500979 0.031958193 prediction 0.41011871265232 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115544636 chr4:115544637 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_127182 0 0 0 5 115544616 115544637 mRNA hsa-miR-30a UGT8 miRanda miRanda
9786 chr4 115544637 115544637 1 + C A COAD 115544636 + 115544616 115544656 41 ATGAAAAATACCGGTGTTTACCTCATTTCCAGATTAGGGGT ATGAAAAATACCGGTGTTTACATCATTTCCAGATTAGGGGT < 41bp 0.444717337400093 0.70505935632616 0.023500979 0.031958193 prediction 0.41011871265232 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115544636 chr4:115544637 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_127182 0 0 0 5 115544615 115544637 mRNA hsa-miR-30c UGT8 miRanda miRanda
9787 chr4 115544637 115544637 1 + C A COAD 115544636 + 115544616 115544656 41 ATGAAAAATACCGGTGTTTACCTCATTTCCAGATTAGGGGT ATGAAAAATACCGGTGTTTACATCATTTCCAGATTAGGGGT < 41bp 0.444717337400093 0.70505935632616 0.023500979 0.031958193 prediction 0.41011871265232 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115544636 chr4:115544637 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_127182 0 0 0 5 115544616 115544637 mRNA hsa-miR-30d UGT8 miRanda miRanda
9788 chr4 115544637 115544637 1 + C A COAD 115544636 + 115544616 115544656 41 ATGAAAAATACCGGTGTTTACCTCATTTCCAGATTAGGGGT ATGAAAAATACCGGTGTTTACATCATTTCCAGATTAGGGGT < 41bp 0.444717337400093 0.70505935632616 0.023500979 0.031958193 prediction 0.41011871265232 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115544636 chr4:115544637 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_127182 0 0 0 5 115544616 115544637 mRNA hsa-miR-30b UGT8 miRanda miRanda
9789 chr4 115544637 115544637 1 + C A COAD 115544636 + 115544616 115544656 41 ATGAAAAATACCGGTGTTTACCTCATTTCCAGATTAGGGGT ATGAAAAATACCGGTGTTTACATCATTTCCAGATTAGGGGT < 41bp 0.444717337400093 0.70505935632616 0.023500979 0.031958193 prediction 0.41011871265232 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115544636 chr4:115544637 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_127182 0 0 0 5 115544616 115544637 mRNA hsa-miR-30e UGT8 miRanda miRanda
9790 chr15 78574027 78574027 1 + A G rs566469652 78574024 + 78574004 78574044 41 TATTTCTTTTCCCCAAGTCACAAAAAACTTGTAAGCTGCTG TATTTCTTTTCCCCAAGTCACAAGAAACTTGTAAGCTGCTG < 41bp 0.543915181374998 0.748896168179321 0.27960324 0.38148248 prediction 0.409961973608647 Functional Gain - DNAJA4 ENSG00000272418 ncRNA_intronic Human sense_intronic chr15:78574024 chr15:78574027 . . 0 24 hm5C_associated_SNPs_127231 0 0 0 1 78574006 78574027 mRNA hsa-miR-758 DNAJA4 miRanda miRanda
9791 chr11 69951883 69951883 1 + C T KIRP 69951882 + 69951862 69951902 41 TCCTTTTTCGACAGCAAAACCCGGAGCACGATTGTAAGTAT TCCTTTTTCGACAGCAAAACCTGGAGCACGATTGTAAGTAT < 41bp 0.630515183799365 0.835489833995597 0.7997052 0.34782895 prediction 0.409949300392464 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69951882 chr11:69951883 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_127234 0 0 0 2 69951883 69951894 mRNA hsa-miR-376a ANO1 miRanda miRanda
9792 chr11 69951883 69951883 1 + C T KIRP 69951882 + 69951862 69951902 41 TCCTTTTTCGACAGCAAAACCCGGAGCACGATTGTAAGTAT TCCTTTTTCGACAGCAAAACCTGGAGCACGATTGTAAGTAT < 41bp 0.630515183799365 0.835489833995597 0.7997052 0.34782895 prediction 0.409949300392464 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69951882 chr11:69951883 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_127234 0 0 0 2 69951882 69951894 mRNA hsa-miR-376b ANO1 miRanda miRanda
9793 chr17 45018321 45018321 1 + C A rs565638240 45018317 + 45018297 45018337 41 CTTGGCCTAACAGTGTGACTCTCTCCACCGCCTCAGTGTAG CTTGGCCTAACAGTGTGACTCTCTACACCGCCTCAGTGTAG < 41bp 0.335080404210346 0.704941428143764 0.86305875 0.8607922 prediction 0.409882856287528 Functional Gain - GOSR2 ENSG00000108433;ENSG00000262633 intronic Human other chr17:45018317 chr17:45018321 . . 0 25 hm5C_associated_SNPs_127248 1 0 1 1 45018302 45018323 mRNA hsa-miR-185 GOSR2 miRanda miRanda
9794 chr3 197908863 197908863 1 + C T rs556913781 197908862 + 197908842 197908882 41 CCCTCTGGGCACGCCTCATGCCAGGTGCATCTGTGGACAGG CCCTCTGGGCACGCCTCATGCTAGGTGCATCTGTGGACAGG < 41bp 0.567764177623327 0.772701856701434 0.9137352 0.83751905 prediction 0.409875358156215 Functional Gain - FAM157A;FAM157B ENSG00000236438 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:197908862 chr3:197908863 . . 0 22 hm5C_associated_SNPs_127253 0 0 0 3 197908856 197908877 mRNA hsa-miR-128 LOC100134822 miRanda miRanda
9795 chr3 197908863 197908863 1 + C T rs556913781 197908862 + 197908842 197908882 41 CCCTCTGGGCACGCCTCATGCCAGGTGCATCTGTGGACAGG CCCTCTGGGCACGCCTCATGCTAGGTGCATCTGTGGACAGG < 41bp 0.567764177623327 0.772701856701434 0.9137352 0.83751905 prediction 0.409875358156215 Functional Gain - FAM157A;FAM157B ENSG00000236438 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:197908862 chr3:197908863 . . 0 22 hm5C_associated_SNPs_127253 0 0 0 3 197908863 197908884 mRNA hsa-miR-339-5p LOC100134822 miRanda miRanda
9796 chr3 197908863 197908863 1 + C T rs556913781 197908862 + 197908842 197908882 41 CCCTCTGGGCACGCCTCATGCCAGGTGCATCTGTGGACAGG CCCTCTGGGCACGCCTCATGCTAGGTGCATCTGTGGACAGG < 41bp 0.567764177623327 0.772701856701434 0.9137352 0.83751905 prediction 0.409875358156215 Functional Gain - FAM157A;FAM157B ENSG00000236438 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:197908862 chr3:197908863 . . 0 22 hm5C_associated_SNPs_127253 0 0 0 3 197908849 197908871 mRNA hsa-miR-874 LOC100134822 miRanda miRanda
9797 chr4 122728757 122728757 1 + T C UCS 122728754 + 122728734 122728774 41 CACCACATGCCCATTTGTGTCAGTTTTGCCTTTTTCCAGCA CACCACATGCCCATTTGTGTCAGCTTTGCCTTTTTCCAGCA < 41bp 0.527910766048178 0.732838126026687 0.12751758 0.33307308 prediction 0.409854719957016 Functional Gain - EXOSC9 ENSG00000123737 CDS Human protein_coding chr4:122728754 chr4:122728757 synonymous SNV . 0 24 hm5C_associated_SNPs_127261 0 0 1 1 122728735 122728757 mRNA hsa-miR-425 EXOSC9 miRanda miRanda
9798 chr2 173368882 173368882 1 + C T DLBC 173368881 + 173368861 173368901 41 CGATACCATGCTGTAAGGATCCGGAAAGAAGAGCGAGAGAT CGATACCATGCTGTAAGGATCTGGAAAGAAGAGCGAGAGAT < 41bp 0.60624672230715 0.811165498306236 0.24481347 0.22371435 prediction 0.409837551998172 Functional Gain - ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173368881 chr2:173368882 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_127266 0 0 1 1 173368864 173368884 mRNA hsa-miR-127-3p ITGA6 miRanda miRanda
9799 chr12 102590434 102590434 1 + A G UCEC 102590431 + 102590411 102590451 41 TGATGTGGACCAACAGGTATCAGACTTGCCAACAAGGTCGG TGATGTGGACCAACAGGTATCAGGCTTGCCAACAAGGTCGG < 41bp 0.482086422550061 0.704910717890314 0.46186987 0.8475293 prediction 0.409821435780629 Functional Gain - PMCH ENSG00000183395 CDS Human protein_coding chr12:102590431 chr12:102590434 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_127268 0 0 1 1 102590417 102590443 mRNA hsa-miR-182 C12orf48 miRanda miRanda
9800 chr13 25435443 25435443 1 + C T UCEC 25435442 + 25435422 25435462 41 ATGGATTCACTGAAAAGATTCCGCAGTGCCATCTTTACCCT ATGGATTCACTGAAAAGATTCTGCAGTGCCATCTTTACCCT < 41bp 0.447787780312487 0.704813807848225 0.05861023 0.1015203 prediction 0.409627615696451 Functional Gain - RNF17 ENSG00000132972 CDS Human protein_coding chr13:25435442 chr13:25435443 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_127324 0 0 0 1 25435434 25435454 mRNA hsa-miR-183 RNF17 miRanda miRanda
9801 chr1 150445040 150445040 1 + C T SKCM 150445039 + 150445019 150445059 41 TTGGAACATGGGACACCCTTCCAGAGAGAGCCAGTGGGGCC TTGGAACATGGGACACCCTTCTAGAGAGAGCCAGTGGGGCC < 41bp 0.623795559362513 0.828544018095847 0.5958425 0.34013557 prediction 0.40949691746667 Functional Gain - RPRD2 ENSG00000163125 CDS Human protein_coding chr1:150445039 chr1:150445040 stopgain 1.000 1 22 hm5C_associated_SNPs_127365 0 0 1 1 150445033 150445053 mRNA hsa-miR-149 RPRD2 miRanda miRanda
9802 chr20 333907 333907 1 + C T HNSC 333906 + 333886 333926 41 GCTGGGTGTGGCGGCTCTGACCACTGGCTATGCAGTGCCCC GCTGGGTGTGGCGGCTCTGACTACTGGCTATGCAGTGCCCC < 41bp 0.455366571293473 0.704727453318024 0.072996646 0.09598005 prediction 0.409454906636048 Functional Gain - NRSN2 ENSG00000125841 CDS Human protein_coding chr20:333906 chr20:333907 synonymous SNV . 0 22 hm5C_associated_SNPs_127384 0 0 1 1 333899 333920 mRNA hsa-miR-153 NRSN2 miRanda miRanda
9803 chr6 7989228 7989228 1 + T C rs138280035 7989226 + 7989206 7989246 41 TTGTTAAAACATGAGGCAGCCATGGGTTGGGAGATCATAGC TTGTTAAAACATGAGGCAGCCACGGGTTGGGAGATCATAGC < 41bp 0.52871984472096 0.73341826984527 0.45697486 0.3923552 prediction 0.40939685024862 Functional Gain - PIP5K1P1 ENSG00000239264;ENSG00000259040 intronic Human other chr6:7989226 chr6:7989228 . . 0 23 hm5C_associated_SNPs_127400 0 0 0 1 7989218 7989239 mRNA hsa-miR-150 PIP5K1P1 miRanda miRanda
9804 chr1 167742573 167742573 1 + T C LUSC 167742570 + 167742550 167742590 41 AGCATGATTCTGGCTGTCCTCTATAGAAGGAAAAACTCTAA AGCATGATTCTGGCTGTCCTCTACAGAAGGAAAAACTCTAA < 41bp 0.577105912172836 0.781759744872352 0.123360306 0.31730884 prediction 0.409307665399032 Functional Gain - MPZL1 ENSG00000197965 CDS Human protein_coding chr1:167742570 chr1:167742573 synonymous SNV . 0 24 hm5C_associated_SNPs_127428 0 0 1 2 167742556 167742577 mRNA hsa-miR-376a MPZL1 miRanda miRanda
9805 chr1 167742573 167742573 1 + T C LUSC 167742570 + 167742550 167742590 41 AGCATGATTCTGGCTGTCCTCTATAGAAGGAAAAACTCTAA AGCATGATTCTGGCTGTCCTCTACAGAAGGAAAAACTCTAA < 41bp 0.577105912172836 0.781759744872352 0.123360306 0.31730884 prediction 0.409307665399032 Functional Gain - MPZL1 ENSG00000197965 CDS Human protein_coding chr1:167742570 chr1:167742573 synonymous SNV . 0 24 hm5C_associated_SNPs_127428 0 0 1 2 167742555 167742577 mRNA hsa-miR-376b MPZL1 miRanda miRanda
9806 chr19 7711208 7711208 1 + C T SARC 7711207 + 7711187 7711227 41 ATCAGCTGTCCCGCTGGACCCCGGTCATCAAGGATGTAATG ATCAGCTGTCCCGCTGGACCCTGGTCATCAAGGATGTAATG < 41bp 0.47003943891281 0.704541909107371 0.072814316 0.020715863 prediction 0.409083818214741 Functional Gain - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7711207 chr19:7711208 nonsynonymous SNV 0.337 5 22 hm5C_associated_SNPs_127482 1 0 1 2 7711207 7711230 mRNA hsa-miR-136 STXBP2 miRanda miRanda
9807 chr19 7711208 7711208 1 + C T SARC 7711207 + 7711187 7711227 41 ATCAGCTGTCCCGCTGGACCCCGGTCATCAAGGATGTAATG ATCAGCTGTCCCGCTGGACCCTGGTCATCAAGGATGTAATG < 41bp 0.47003943891281 0.704541909107371 0.072814316 0.020715863 prediction 0.409083818214741 Functional Gain - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7711207 chr19:7711208 nonsynonymous SNV 0.337 5 22 hm5C_associated_SNPs_127482 1 0 1 2 7711195 7711218 mRNA hsa-miR-758 STXBP2 miRanda miRanda
9808 chr1 246830293 246830293 1 + A G rs3795471 246830290 + 246830270 246830310 41 ATCCTATTGCGGGGTCATTACGCAAAAATTCAATCATACCT ATCCTATTGCGGGGTCATTACGCGAAAATTCAATCATACCT < 41bp 0.584314457711512 0.788799544936471 0.11900592 0.18214741 prediction 0.408970174449916 Functional Gain - CNST ENSG00000162852 UTR3 Human protein_coding chr1:246830290 chr1:246830293 . . 0 24 hm5C_associated_SNPs_127508 0 0 1 1 246830278 246830298 mRNA hsa-miR-129-5p CNST miRanda miRanda
9809 chr16 66920911 66920911 1 + A G rs559943999 66920908 + 66920888 66920928 41 TCTATCTGGAGAGGTGAAAACACAAAGGCTTAAGGACAACA TCTATCTGGAGAGGTGAAAACACGAAGGCTTAAGGACAACA < 41bp 0.567133145157642 0.771597390115007 0.307055 0.48029527 prediction 0.40892848991473 Functional Gain - PDP2 ENSG00000172840 UTR3 Human protein_coding chr16:66920908 chr16:66920911 . . 0 24 hm5C_associated_SNPs_127514 0 0 0 1 66920893 66920915 mRNA hsa-miR-9 PDP2 miRanda miRanda
9810 chr7 27285737 27285737 1 + C T PRAD 27285736 + 27285716 27285756 41 CCTTCAGCGGCTCGCTGCGCCCGCTCGACACGTTCCGCGTG CCTTCAGCGGCTCGCTGCGCCTGCTCGACACGTTCCGCGTG < 41bp 0.469471354977914 0.704349634476622 0.066948235 0.13985804 prediction 0.408699268953244 Functional Gain - EVX1 ENSG00000106038 CDS Human protein_coding chr7:27285736 chr7:27285737 nonsynonymous SNV 0.972 4 22 hm5C_associated_SNPs_127570 0 0 0 1 27285736 27285759 mRNA hsa-miR-503 EVX1 miRanda miRanda
9811 chr7 89884766 89884766 1 + T C SKCM 89884764 + 89884744 89884784 41 TCAAGCCTATGGACCTTAATCGTGTCATCAAACTCCTCGAA TCAAGCCTATGGACCTTAATCGCGTCATCAAACTCCTCGAA < 41bp 0.427389685003552 0.704293812595351 0.40179613 0.42621952 prediction 0.408587625190702 Functional Gain - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89884764 chr7:89884766 synonymous SNV . 0 23 hm5C_associated_SNPs_127609 0 0 0 1 89884750 89884772 mRNA hsa-miR-425 C7orf63 miRanda miRanda
9812 chr10 105885648 105885648 1 + C T rs559170563 105885647 + 105885627 105885667 41 AATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGG AATTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGG < 41bp 0.491892860052834 0.704247731178704 0.37515375 0.28517765 prediction 0.408495462357408 Functional Gain - SFR1 ENSG00000156384 UTR3 Human protein_coding chr10:105885647 chr10:105885648 . . 0 22 hm5C_associated_SNPs_127634 0 0 0 1 105885642 105885663 mRNA hsa-miR-216a C10orf78 miRanda miRanda
9813 chr15 49574197 49574197 1 + A G UCEC 49574194 + 49574174 49574214 41 ACCTTTCCAGGTGGAACTTGCAGAAATCTGTGCCAAGAGTG ACCTTTCCAGGTGGAACTTGCAGGAATCTGTGCCAAGAGTG < 41bp 0.605134110775956 0.8093420012321 0.36196846 0.8683808 prediction 0.408415780912287 Functional Gain - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49574194 chr15:49574197 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_127647 0 0 1 3 49574192 49574210 mRNA hsa-miR-96 GALK2 miRanda miRanda
9814 chr15 49574197 49574197 1 + A G UCEC 49574194 + 49574174 49574214 41 ACCTTTCCAGGTGGAACTTGCAGAAATCTGTGCCAAGAGTG ACCTTTCCAGGTGGAACTTGCAGGAATCTGTGCCAAGAGTG < 41bp 0.605134110775956 0.8093420012321 0.36196846 0.8683808 prediction 0.408415780912287 Functional Gain - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49574194 chr15:49574197 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_127647 0 0 1 3 49574184 49574199 mRNA hsa-miR-544 GALK2 miRanda miRanda
9815 chr15 49574197 49574197 1 + A G UCEC 49574194 + 49574174 49574214 41 ACCTTTCCAGGTGGAACTTGCAGAAATCTGTGCCAAGAGTG ACCTTTCCAGGTGGAACTTGCAGGAATCTGTGCCAAGAGTG < 41bp 0.605134110775956 0.8093420012321 0.36196846 0.8683808 prediction 0.408415780912287 Functional Gain - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49574194 chr15:49574197 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_127647 0 0 1 3 49574189 49574210 mRNA hsa-miR-1271 GALK2 miRanda miRanda
9816 chr22 51237176 51237176 1 + C T ESCA 51237175 + 51237155 51237195 41 AAGGCAGTGTTGAAAGGTGTCCGCAGCCACACGCAAAAAAG AAGGCAGTGTTGAAAGGTGTCTGCAGCCACACGCAAAAAAG < 41bp 0.596872360350745 0.800959701440617 0.12288654 0.34202597 prediction 0.408174682179746 Functional Gain - RPL23AP82 ENSG00000184319 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:51237175 chr22:51237176 . . 0 22 hm5C_associated_SNPs_127715 0 0 0 1 51237176 51237194 mRNA hsa-miR-129-5p RPL23AP82 miRanda miRanda
9817 chr9 138441743 138441743 1 + C T SARC 138441742 + 138441722 138441762 41 CAGACACAGAGCCCGGACCACCTGGACCTACCCTCCAGCCA CAGACACAGAGCCCGGACCACTTGGACCTACCCTCCAGCCA < 41bp 0.574774971144862 0.77881623631958 0.15586272 0.06066549 prediction 0.408082530349436 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138441742 chr9:138441743 synonymous SNV 0.013 0 22 hm5C_associated_SNPs_127739 0 0 0 2 138441732 138441757 mRNA hsa-let-7b OBP2A miRanda miRanda
9818 chr9 138441743 138441743 1 + C T SARC 138441742 + 138441722 138441762 41 CAGACACAGAGCCCGGACCACCTGGACCTACCCTCCAGCCA CAGACACAGAGCCCGGACCACTTGGACCTACCCTCCAGCCA < 41bp 0.574774971144862 0.77881623631958 0.15586272 0.06066549 prediction 0.408082530349436 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138441742 chr9:138441743 synonymous SNV 0.013 0 22 hm5C_associated_SNPs_127739 0 0 0 2 138441732 138441757 mRNA hsa-let-7c OBP2A miRanda miRanda
9819 chr1 203046038 203046038 1 + T G rs141906918 203046036 + 203046016 203046056 41 GCATCACCACTCTCCCAACCCATCACCGTGACTGCAGTTCC GCATCACCACTCTCCCAACCCAGCACCGTGACTGCAGTTCC < 41bp 0.359902022245558 0.703982656896062 0.028288752 0.16487479 prediction 0.407965313792124 Functional Gain - PPFIA4 ENSG00000143847 UTR3 Human protein_coding chr1:203046036 chr1:203046038 . . 0 23 hm5C_associated_SNPs_127770 0 0 0 1 203046025 203046046 mRNA hsa-miR-125a-3p PPFIA4 miRanda miRanda
9820 chr14 39584053 39584053 1 + C T BRCA 39584052 + 39584032 39584072 41 GGATCGAAGCAGCTCAATGTCCAGATGTTGTGGTAGCTCAA GGATCGAAGCAGCTCAATGTCTAGATGTTGTGGTAGCTCAA < 41bp 0.601157232728213 0.805092373513636 0.86078334 0.14781421 prediction 0.407870281570846 Functional Gain - GEMIN2 ENSG00000092208 CDS Human protein_coding chr14:39584052 chr14:39584053 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_127791 0 0 1 2 39584036 39584056 mRNA hsa-miR-378 SIP1 miRanda miRanda
9821 chr14 39584053 39584053 1 + C T BRCA 39584052 + 39584032 39584072 41 GGATCGAAGCAGCTCAATGTCCAGATGTTGTGGTAGCTCAA GGATCGAAGCAGCTCAATGTCTAGATGTTGTGGTAGCTCAA < 41bp 0.601157232728213 0.805092373513636 0.86078334 0.14781421 prediction 0.407870281570846 Functional Gain - GEMIN2 ENSG00000092208 CDS Human protein_coding chr14:39584052 chr14:39584053 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_127791 0 0 1 2 39584035 39584056 mRNA hsa-miR-422a SIP1 miRanda miRanda
9822 chr10 81113705 81113705 1 + C T rs2230225 81113704 + 81113684 81113724 41 AAACGATACGTGTGCCCACTCCACTGTCACAGTGTGCCTGA AAACGATACGTGTGCCCACTCTACTGTCACAGTGTGCCTGA < 41bp 0.483105957612705 0.703799938305697 0.084890306 0.13496405 prediction 0.407599876611394 Functional Gain - PPIF ENSG00000108179 UTR3 Human protein_coding chr10:81113704 chr10:81113705 . . 0 22 hm5C_associated_SNPs_127856 0 0 1 1 81113694 81113714 mRNA hsa-miR-542-3p PPIF miRanda miRanda
9823 chr16 88926377 88926377 1 + C G BLCA 88926373 + 88926353 88926393 41 ACAACCCGGGGGACCGCATCCAGTCCAGGTGGGCCCTACTT ACAACCCGGGGGACCGCATCCAGTGCAGGTGGGCCCTACTT < 41bp 0.399389327623551 0.703778625630885 0.4009235 0.32350487 prediction 0.40755725126177 Functional Gain - TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88926373 chr16:88926377 nonsynonymous SNV 0.941 5 25 hm5C_associated_SNPs_127865 0 0 1 3 88926364 88926380 mRNA hsa-miR-370 TRAPPC2L miRanda miRanda
9824 chr16 88926377 88926377 1 + C G BLCA 88926373 + 88926353 88926393 41 ACAACCCGGGGGACCGCATCCAGTCCAGGTGGGCCCTACTT ACAACCCGGGGGACCGCATCCAGTGCAGGTGGGCCCTACTT < 41bp 0.399389327623551 0.703778625630885 0.4009235 0.32350487 prediction 0.40755725126177 Functional Gain - TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88926373 chr16:88926377 nonsynonymous SNV 0.941 5 25 hm5C_associated_SNPs_127865 0 0 1 3 88926362 88926380 mRNA hsa-miR-378 TRAPPC2L miRanda miRanda
9825 chr16 88926377 88926377 1 + C G BLCA 88926373 + 88926353 88926393 41 ACAACCCGGGGGACCGCATCCAGTCCAGGTGGGCCCTACTT ACAACCCGGGGGACCGCATCCAGTGCAGGTGGGCCCTACTT < 41bp 0.399389327623551 0.703778625630885 0.4009235 0.32350487 prediction 0.40755725126177 Functional Gain - TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88926373 chr16:88926377 nonsynonymous SNV 0.941 5 25 hm5C_associated_SNPs_127865 0 0 1 3 88926362 88926380 mRNA hsa-miR-422a TRAPPC2L miRanda miRanda
9826 chr8 22973103 22973103 1 + C T UCEC 22973102 + 22973082 22973122 41 CACCTTCCGGAATGAAAACTCCCCAGAGATGTGCCGGAAGT CACCTTCCGGAATGAAAACTCTCCAGAGATGTGCCGGAAGT < 41bp 0.651181978608626 0.85493932611169 0.24359503 0.96020234 prediction 0.407514695006127 Functional Gain - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22973102 chr8:22973103 synonymous SNV . 0 22 hm5C_associated_SNPs_127873 0 0 0 2 22973089 22973110 mRNA hsa-miR-330-5p TNFRSF10C miRanda miRanda
9827 chr8 22973103 22973103 1 + C T UCEC 22973102 + 22973082 22973122 41 CACCTTCCGGAATGAAAACTCCCCAGAGATGTGCCGGAAGT CACCTTCCGGAATGAAAACTCTCCAGAGATGTGCCGGAAGT < 41bp 0.651181978608626 0.85493932611169 0.24359503 0.96020234 prediction 0.407514695006127 Functional Gain - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22973102 chr8:22973103 synonymous SNV . 0 22 hm5C_associated_SNPs_127873 0 0 0 2 22973091 22973110 mRNA hsa-miR-326 TNFRSF10C miRanda miRanda
9828 chr3 131068523 131068523 1 + A G STAD 131068520 + 131068500 131068540 41 GTGTTTGGAAAAAGTGGTGCCTCAAGCCAGCGACTGTTTTG GTGTTTGGAAAAAGTGGTGCCTCGAGCCAGCGACTGTTTTG < 41bp 0.482574666139906 0.703742642175977 0.27761465 0.30658418 prediction 0.407485284351953 Functional Gain - NEK11 ENSG00000114670 CDS Human protein_coding chr3:131068520 chr3:131068523 nonsynonymous SNV 0.930 0 24 hm5C_associated_SNPs_127881 0 0 0 2 131068518 131068538 mRNA hsa-miR-212 NEK11 miRanda miRanda
9829 chr3 131068523 131068523 1 + A G STAD 131068520 + 131068500 131068540 41 GTGTTTGGAAAAAGTGGTGCCTCAAGCCAGCGACTGTTTTG GTGTTTGGAAAAAGTGGTGCCTCGAGCCAGCGACTGTTTTG < 41bp 0.482574666139906 0.703742642175977 0.27761465 0.30658418 prediction 0.407485284351953 Functional Gain - NEK11 ENSG00000114670 CDS Human protein_coding chr3:131068520 chr3:131068523 nonsynonymous SNV 0.930 0 24 hm5C_associated_SNPs_127881 0 0 0 2 131068518 131068538 mRNA hsa-miR-132 NEK11 miRanda miRanda
9830 chr18 43418924 43418924 1 + C T GBM 43418923 + 43418903 43418943 41 CGCCAACAGCCTGGGCCGCTCCGAGGCCAGCGTCTACCTGT CGCCAACAGCCTGGGCCGCTCTGAGGCCAGCGTCTACCTGT < 41bp 0.610701704544229 0.814371926636061 0.74592686 0.42848283 prediction 0.407340444183665 Functional Gain - SIGLEC15 ENSG00000197046 CDS Human protein_coding chr18:43418923 chr18:43418924 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_127922 0 0 0 1 43418921 43418941 mRNA hsa-miR-379 SIGLEC15 miRanda miRanda
9831 chr6 150293079 150293079 1 + T C rs148079032 150293076 + 150293056 150293096 41 AGTGATCCTCTAGACTCAGCCTCTAGAATAGCTGGGACTAC AGTGATCCTCTAGACTCAGCCTCCAGAATAGCTGGGACTAC < 41bp 0.498268490962366 0.703663098166476 0.658788 0.9588633 prediction 0.407326196332952 Functional Gain - ULBP1 ENSG00000111981 UTR3 Human protein_coding chr6:150293076 chr6:150293079 . . 0 24 hm5C_associated_SNPs_127928 0 0 0 1 150293057 150293079 mRNA hsa-miR-485-5p ULBP1 miRanda miRanda
9832 chr16 2015002 2015002 1 + C G rs61749488 2015001 + 2014981 2015021 41 CCGTCCGGCCCCAGCCGCGGCCCGGGAATCTACGTCACCCG CCGTCCGGCCCCAGCCGCGGCGCGGGAATCTACGTCACCCG < 41bp 0.675542219770042 0.879203141168834 0.17326874 0.33658123 prediction 0.407321842797584 Functional Gain - SNHG9 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015001 chr16:2015002 . . 0 22 hm5C_associated_SNPs_127930 0 0 1 1 2014995 2015016 lncRNA hsa-miR-1277-3p SNHG9 miRanda starBase2
9833 chr19 11762815 11762815 1 + C T LUSC 11762814 + 11762794 11762834 41 GGGAAAAAACCTTCGATTCTCCCCAAACCGTTCGAAGATAC GGGAAAAAACCTTCGATTCTCTCCAAACCGTTCGAAGATAC < 41bp 0.468534356751197 0.703598100681504 0.06019935 0.9512906 prediction 0.407196201363009 Functional Gain - ZNF627;ZNF833P ENSG00000197332;ENSG00000267500 ncRNA_exonic Human other chr19:11762814 chr19:11762815 . . 0 22 hm5C_associated_SNPs_127957 0 0 0 6 11762815 11762840 mRNA hsa-miR-10a ZNF833 miRanda miRanda
9834 chr19 11762815 11762815 1 + C T LUSC 11762814 + 11762794 11762834 41 GGGAAAAAACCTTCGATTCTCCCCAAACCGTTCGAAGATAC GGGAAAAAACCTTCGATTCTCTCCAAACCGTTCGAAGATAC < 41bp 0.468534356751197 0.703598100681504 0.06019935 0.9512906 prediction 0.407196201363009 Functional Gain - ZNF627;ZNF833P ENSG00000197332;ENSG00000267500 ncRNA_exonic Human other chr19:11762814 chr19:11762815 . . 0 22 hm5C_associated_SNPs_127957 0 0 0 6 11762815 11762840 mRNA hsa-miR-10b ZNF833 miRanda miRanda
9835 chr19 11762815 11762815 1 + C T LUSC 11762814 + 11762794 11762834 41 GGGAAAAAACCTTCGATTCTCCCCAAACCGTTCGAAGATAC GGGAAAAAACCTTCGATTCTCTCCAAACCGTTCGAAGATAC < 41bp 0.468534356751197 0.703598100681504 0.06019935 0.9512906 prediction 0.407196201363009 Functional Gain - ZNF627;ZNF833P ENSG00000197332;ENSG00000267500 ncRNA_exonic Human other chr19:11762814 chr19:11762815 . . 0 22 hm5C_associated_SNPs_127957 0 0 0 6 11762815 11762840 lncRNA hsa-miR-10a-5p AC008543.1 miRanda starBase2
9836 chr19 11762815 11762815 1 + C T LUSC 11762814 + 11762794 11762834 41 GGGAAAAAACCTTCGATTCTCCCCAAACCGTTCGAAGATAC GGGAAAAAACCTTCGATTCTCTCCAAACCGTTCGAAGATAC < 41bp 0.468534356751197 0.703598100681504 0.06019935 0.9512906 prediction 0.407196201363009 Functional Gain - ZNF627;ZNF833P ENSG00000197332;ENSG00000267500 ncRNA_exonic Human other chr19:11762814 chr19:11762815 . . 0 22 hm5C_associated_SNPs_127957 0 0 0 6 11762815 11762840 lncRNA hsa-miR-10b-5p AC008543.1 miRanda starBase2
9837 chr19 11762815 11762815 1 + C T LUSC 11762814 + 11762794 11762834 41 GGGAAAAAACCTTCGATTCTCCCCAAACCGTTCGAAGATAC GGGAAAAAACCTTCGATTCTCTCCAAACCGTTCGAAGATAC < 41bp 0.468534356751197 0.703598100681504 0.06019935 0.9512906 prediction 0.407196201363009 Functional Gain - ZNF627;ZNF833P ENSG00000197332;ENSG00000267500 ncRNA_exonic Human other chr19:11762814 chr19:11762815 . . 0 22 hm5C_associated_SNPs_127957 0 0 0 6 11762799 11762819 lncRNA hsa-miR-3150a-3p AC008543.1 miRanda starBase2
9838 chr19 11762815 11762815 1 + C T LUSC 11762814 + 11762794 11762834 41 GGGAAAAAACCTTCGATTCTCCCCAAACCGTTCGAAGATAC GGGAAAAAACCTTCGATTCTCTCCAAACCGTTCGAAGATAC < 41bp 0.468534356751197 0.703598100681504 0.06019935 0.9512906 prediction 0.407196201363009 Functional Gain - ZNF627;ZNF833P ENSG00000197332;ENSG00000267500 ncRNA_exonic Human other chr19:11762814 chr19:11762815 . . 0 22 hm5C_associated_SNPs_127957 0 0 0 6 11762801 11762819 lncRNA hsa-miR-6763-5p AC008543.1 miRanda starBase2
9839 chr11 2417935 2417935 1 + T C rs2229751 2417932 + 2417912 2417952 41 GGCATTGCTGCCATCGTGGTCGCTGTGATCATGGTGAGCGG GGCATTGCTGCCATCGTGGTCGCCGTGATCATGGTGAGCGG < 41bp 0.561737914039539 0.76532862621951 0.086567014 0.1660943 prediction 0.407181424359942 Functional Gain - CD81 ENSG00000110651 CDS Human protein_coding chr11:2417932 chr11:2417935 synonymous SNV . 0 24 hm5C_associated_SNPs_127964 0 0 1 2 2417912 2417936 mRNA hsa-miR-29b CD81 miRanda miRanda
9840 chr11 2417935 2417935 1 + T C rs2229751 2417932 + 2417912 2417952 41 GGCATTGCTGCCATCGTGGTCGCTGTGATCATGGTGAGCGG GGCATTGCTGCCATCGTGGTCGCCGTGATCATGGTGAGCGG < 41bp 0.561737914039539 0.76532862621951 0.086567014 0.1660943 prediction 0.407181424359942 Functional Gain - CD81 ENSG00000110651 CDS Human protein_coding chr11:2417932 chr11:2417935 synonymous SNV . 0 24 hm5C_associated_SNPs_127964 0 0 1 2 2417922 2417944 mRNA hsa-miR-433 CD81 miRanda miRanda
9841 chr13 107029772 107029772 1 + C A rs190266855 107029771 + 107029751 107029791 41 CCTCAAAACCAGATAAGTGCCCGAATAAAAGGGGCCCCAGA CCTCAAAACCAGATAAGTGCCAGAATAAAAGGGGCCCCAGA < 41bp 0.633144615041131 0.836648651707839 0.06341943 0.15214005 prediction 0.407008073333416 Functional Gain - LINC00460 ENSG00000233532 ncRNA_exonic Human lincRNA chr13:107029771 chr13:107029772 . . 0 22 hm5C_associated_SNPs_128003 0 0 0 1 107029770 107029793 mRNA hsa-miR-330-5p LOC728192 miRanda miRanda
9842 chr2 27258870 27258870 1 + C T SKCM 27258869 + 27258849 27258889 41 CATGGTTACCGCATCTGTATCCAGGCCATCCTGCAAGACAA CATGGTTACCGCATCTGTATCTAGGCCATCCTGCAAGACAA < 41bp 0.440316469321776 0.703502960656712 0.42133635 0.21599624 prediction 0.407005921313425 Functional Gain - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27258869 chr2:27258870 stopgain 0.999 1 22 hm5C_associated_SNPs_128004 0 0 1 2 27258846 27258870 mRNA hsa-miR-383 TMEM214 miRanda miRanda
9843 chr2 27258870 27258870 1 + C T SKCM 27258869 + 27258849 27258889 41 CATGGTTACCGCATCTGTATCCAGGCCATCCTGCAAGACAA CATGGTTACCGCATCTGTATCTAGGCCATCCTGCAAGACAA < 41bp 0.440316469321776 0.703502960656712 0.42133635 0.21599624 prediction 0.407005921313425 Functional Gain - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27258869 chr2:27258870 stopgain 0.999 1 22 hm5C_associated_SNPs_128004 0 0 1 2 27258868 27258888 mRNA hsa-miR-431 TMEM214 miRanda miRanda
9844 chr2 1520681 1520681 1 + T C SKCM 1520679 + 1520659 1520699 41 CGGGAGGCTCCCTCGGGTGACTTGGATCTCCATGTCGCTGG CGGGAGGCTCCCTCGGGTGACTCGGATCTCCATGTCGCTGG < 41bp 0.649933749521239 0.853266682548118 0.77378833 0.8476634 prediction 0.406665866053759 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1520679 chr2:1520681 nonsynonymous SNV 0.021 0 23 hm5C_associated_SNPs_128086 0 0 0 1 1520662 1520682 mRNA hsa-miR-224 TPO miRanda miRanda
9845 chr2 27261056 27261056 1 + A G UCEC 27261053 + 27261033 27261073 41 AGTGCCTGACGGTGGACCCCCTCAGTGCCAGCGTCTGGAGG AGTGCCTGACGGTGGACCCCCTCGGTGCCAGCGTCTGGAGG < 41bp 0.638650976846451 0.841922198613258 0.09677768 0.07160461 prediction 0.406542443533615 Functional Gain - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27261053 chr2:27261056 nonsynonymous SNV 0.649 4 24 hm5C_associated_SNPs_128123 0 0 1 1 27261042 27261064 mRNA hsa-miR-422a TMEM214 miRanda miRanda
9846 chr19 14720890 14720890 1 + A G LUSC 14720887 + 14720867 14720907 41 TCCATCCAGCTTCTGGGAGCCAGAGGAACCCAATAACATCC TCCATCCAGCTTCTGGGAGCCAGGGGAACCCAATAACATCC < 41bp 0.599280497776137 0.80254884406272 0.94533014 0.9456307 prediction 0.406536692573166 Functional Gain - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14720887 chr19:14720890 nonsynonymous SNV 0.626 0 24 hm5C_associated_SNPs_128127 0 0 0 1 14720876 14720890 mRNA hsa-miR-149 CLEC17A miRanda miRanda
9847 chr12 53807773 53807773 1 + A G rs140808297 53807770 + 53807750 53807790 41 GATCCAGTATCTTGTTTGGCCTCAAAACAGAAGCAGCTTCT GATCCAGTATCTTGTTTGGCCTCGAAACAGAAGCAGCTTCT < 41bp 0.47087432383917 0.703244989196031 0.12161729 0.85176724 prediction 0.406489978392063 Functional Gain - SP1 ENSG00000185591 UTR3 Human protein_coding chr12:53807770 chr12:53807773 . . 0 24 hm5C_associated_SNPs_128141 0 0 1 10 53807768 53807789 mRNA hsa-miR-302a SP1 miRanda miRanda
9848 chr12 53807773 53807773 1 + A G rs140808297 53807770 + 53807750 53807790 41 GATCCAGTATCTTGTTTGGCCTCAAAACAGAAGCAGCTTCT GATCCAGTATCTTGTTTGGCCTCGAAACAGAAGCAGCTTCT < 41bp 0.47087432383917 0.703244989196031 0.12161729 0.85176724 prediction 0.406489978392063 Functional Gain - SP1 ENSG00000185591 UTR3 Human protein_coding chr12:53807770 chr12:53807773 . . 0 24 hm5C_associated_SNPs_128141 0 0 1 10 53807767 53807789 mRNA hsa-miR-302b SP1 miRanda miRanda
9849 chr12 53807773 53807773 1 + A G rs140808297 53807770 + 53807750 53807790 41 GATCCAGTATCTTGTTTGGCCTCAAAACAGAAGCAGCTTCT GATCCAGTATCTTGTTTGGCCTCGAAACAGAAGCAGCTTCT < 41bp 0.47087432383917 0.703244989196031 0.12161729 0.85176724 prediction 0.406489978392063 Functional Gain - SP1 ENSG00000185591 UTR3 Human protein_coding chr12:53807770 chr12:53807773 . . 0 24 hm5C_associated_SNPs_128141 0 0 1 10 53807767 53807789 mRNA hsa-miR-302c SP1 miRanda miRanda
9850 chr12 53807773 53807773 1 + A G rs140808297 53807770 + 53807750 53807790 41 GATCCAGTATCTTGTTTGGCCTCAAAACAGAAGCAGCTTCT GATCCAGTATCTTGTTTGGCCTCGAAACAGAAGCAGCTTCT < 41bp 0.47087432383917 0.703244989196031 0.12161729 0.85176724 prediction 0.406489978392063 Functional Gain - SP1 ENSG00000185591 UTR3 Human protein_coding chr12:53807770 chr12:53807773 . . 0 24 hm5C_associated_SNPs_128141 0 0 1 10 53807767 53807789 mRNA hsa-miR-302d SP1 miRanda miRanda
9851 chr12 53807773 53807773 1 + A G rs140808297 53807770 + 53807750 53807790 41 GATCCAGTATCTTGTTTGGCCTCAAAACAGAAGCAGCTTCT GATCCAGTATCTTGTTTGGCCTCGAAACAGAAGCAGCTTCT < 41bp 0.47087432383917 0.703244989196031 0.12161729 0.85176724 prediction 0.406489978392063 Functional Gain - SP1 ENSG00000185591 UTR3 Human protein_coding chr12:53807770 chr12:53807773 . . 0 24 hm5C_associated_SNPs_128141 0 0 1 10 53807766 53807789 mRNA hsa-miR-373 SP1 miRanda miRanda
9852 chr12 53807773 53807773 1 + A G rs140808297 53807770 + 53807750 53807790 41 GATCCAGTATCTTGTTTGGCCTCAAAACAGAAGCAGCTTCT GATCCAGTATCTTGTTTGGCCTCGAAACAGAAGCAGCTTCT < 41bp 0.47087432383917 0.703244989196031 0.12161729 0.85176724 prediction 0.406489978392063 Functional Gain - SP1 ENSG00000185591 UTR3 Human protein_coding chr12:53807770 chr12:53807773 . . 0 24 hm5C_associated_SNPs_128141 0 0 1 10 53807768 53807789 mRNA hsa-miR-520e SP1 miRanda miRanda
9853 chr12 53807773 53807773 1 + A G rs140808297 53807770 + 53807750 53807790 41 GATCCAGTATCTTGTTTGGCCTCAAAACAGAAGCAGCTTCT GATCCAGTATCTTGTTTGGCCTCGAAACAGAAGCAGCTTCT < 41bp 0.47087432383917 0.703244989196031 0.12161729 0.85176724 prediction 0.406489978392063 Functional Gain - SP1 ENSG00000185591 UTR3 Human protein_coding chr12:53807770 chr12:53807773 . . 0 24 hm5C_associated_SNPs_128141 0 0 1 10 53807767 53807789 mRNA hsa-miR-520a-3p SP1 miRanda miRanda
9854 chr12 53807773 53807773 1 + A G rs140808297 53807770 + 53807750 53807790 41 GATCCAGTATCTTGTTTGGCCTCAAAACAGAAGCAGCTTCT GATCCAGTATCTTGTTTGGCCTCGAAACAGAAGCAGCTTCT < 41bp 0.47087432383917 0.703244989196031 0.12161729 0.85176724 prediction 0.406489978392063 Functional Gain - SP1 ENSG00000185591 UTR3 Human protein_coding chr12:53807770 chr12:53807773 . . 0 24 hm5C_associated_SNPs_128141 0 0 1 10 53807768 53807789 mRNA hsa-miR-520b SP1 miRanda miRanda
9855 chr12 53807773 53807773 1 + A G rs140808297 53807770 + 53807750 53807790 41 GATCCAGTATCTTGTTTGGCCTCAAAACAGAAGCAGCTTCT GATCCAGTATCTTGTTTGGCCTCGAAACAGAAGCAGCTTCT < 41bp 0.47087432383917 0.703244989196031 0.12161729 0.85176724 prediction 0.406489978392063 Functional Gain - SP1 ENSG00000185591 UTR3 Human protein_coding chr12:53807770 chr12:53807773 . . 0 24 hm5C_associated_SNPs_128141 0 0 1 10 53807767 53807789 mRNA hsa-miR-520c-3p SP1 miRanda miRanda
9856 chr12 53807773 53807773 1 + A G rs140808297 53807770 + 53807750 53807790 41 GATCCAGTATCTTGTTTGGCCTCAAAACAGAAGCAGCTTCT GATCCAGTATCTTGTTTGGCCTCGAAACAGAAGCAGCTTCT < 41bp 0.47087432383917 0.703244989196031 0.12161729 0.85176724 prediction 0.406489978392063 Functional Gain - SP1 ENSG00000185591 UTR3 Human protein_coding chr12:53807770 chr12:53807773 . . 0 24 hm5C_associated_SNPs_128141 0 0 1 10 53807767 53807789 mRNA hsa-miR-520d-3p SP1 miRanda miRanda
9857 chr9 131011001 131011001 1 + C A LIHC 131011000 + 131010980 131011020 41 AGACCGTGAGGGACCTCATGCCCAAGACCATCATGCACCTC AGACCGTGAGGGACCTCATGCACAAGACCATCATGCACCTC < 41bp 0.434266657266208 0.703212585581715 0.011974722 0.033373386 prediction 0.40642517116343 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:131011000 chr9:131011001 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_128156 0 0 1 2 131010999 131011021 mRNA hsa-miR-18a DNM1 miRanda miRanda
9858 chr9 131011001 131011001 1 + C A LIHC 131011000 + 131010980 131011020 41 AGACCGTGAGGGACCTCATGCCCAAGACCATCATGCACCTC AGACCGTGAGGGACCTCATGCACAAGACCATCATGCACCTC < 41bp 0.434266657266208 0.703212585581715 0.011974722 0.033373386 prediction 0.40642517116343 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:131011000 chr9:131011001 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_128156 0 0 1 2 131010999 131011021 mRNA hsa-miR-18b DNM1 miRanda miRanda
9859 chr20 42908269 42908269 1 + C T rs538690355 42908268 + 42908248 42908288 41 GGTTAGGATCTGAGGTGAGTCCCAGGATGTTTCGTCCACCA GGTTAGGATCTGAGGTGAGTCTCAGGATGTTTCGTCCACCA < 41bp 0.566429669174528 0.769545547206741 0.10607493 0.077653795 prediction 0.406231756064427 Functional Gain - GDAP1L1 ENSG00000124194 UTR3 Human protein_coding chr20:42908268 chr20:42908269 . . 0 22 hm5C_associated_SNPs_128210 0 0 0 1 42908252 42908273 mRNA hsa-miR-422a GDAP1L1 miRanda miRanda
9860 chr15 44630445 44630445 1 + A G rs202050874 44630442 + 44630422 44630462 41 GTTACTTGGGCAGAACAAATCAAAAGAGGTGGTGATGCAGG GTTACTTGGGCAGAACAAATCAAGAGAGGTGGTGATGCAGG < 41bp 0.550784929377204 0.753888805651543 0.7740054 0.8746524 prediction 0.406207752548678 Functional Gain - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44630442 chr15:44630445 synonymous SNV . 0 24 hm5C_associated_SNPs_128215 0 0 1 1 44630436 44630457 mRNA hsa-miR-197 CASC4 miRanda miRanda
9861 chr11 65650988 65650988 1 + C T UCEC 65650987 + 65650967 65651007 41 CTAACCTCCTAGGGCTATTTCCGGCTGCACCGAGGGAGCAA CTAACCTCCTAGGGCTATTTCTGGCTGCACCGAGGGAGCAA < 41bp 0.59229796807009 0.795398600232911 0.92729187 0.36424467 prediction 0.406201264325642 Functional Gain - CTSW ENSG00000172543 CDS Human protein_coding chr11:65650987 chr11:65650988 nonsynonymous SNV 0.772 4 22 hm5C_associated_SNPs_128217 0 0 0 1 65650988 65651010 mRNA hsa-miR-137 CTSW miRanda miRanda
9862 chr18 32398187 32398187 1 + C G LUAD 32398183 + 32398163 32398203 41 GAGAGTATGATGGGATTTCGCTACCGATGCCAACAGTGTCA GAGAGTATGATGGGATTTCGCTACGGATGCCAACAGTGTCA < 41bp 0.448096819354985 0.70295834311265 0.13910446 0.3340044 prediction 0.4059166862253 Functional Gain - DTNA ENSG00000134769 CDS Human protein_coding chr18:32398183 chr18:32398187 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_128301 0 0 1 3 32398182 32398205 mRNA hsa-miR-425 DTNA miRanda miRanda
9863 chr18 32398187 32398187 1 + C G LUAD 32398183 + 32398163 32398203 41 GAGAGTATGATGGGATTTCGCTACCGATGCCAACAGTGTCA GAGAGTATGATGGGATTTCGCTACGGATGCCAACAGTGTCA < 41bp 0.448096819354985 0.70295834311265 0.13910446 0.3340044 prediction 0.4059166862253 Functional Gain - DTNA ENSG00000134769 CDS Human protein_coding chr18:32398183 chr18:32398187 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_128301 0 0 1 3 32398184 32398205 mRNA hsa-miR-542-3p DTNA miRanda miRanda
9864 chr18 32398187 32398187 1 + C G LUAD 32398183 + 32398163 32398203 41 GAGAGTATGATGGGATTTCGCTACCGATGCCAACAGTGTCA GAGAGTATGATGGGATTTCGCTACGGATGCCAACAGTGTCA < 41bp 0.448096819354985 0.70295834311265 0.13910446 0.3340044 prediction 0.4059166862253 Functional Gain - DTNA ENSG00000134769 CDS Human protein_coding chr18:32398183 chr18:32398187 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_128301 0 0 1 3 32398185 32398207 mRNA hsa-miR-758 DTNA miRanda miRanda
9865 chr3 183911548 183911548 1 + T C rs10937164 183911546 + 183911526 183911566 41 CTCTCAGACCCCTGGGCCACCATGTAGGCCACCACTCCAGG CTCTCAGACCCCTGGGCCACCACGTAGGCCACCACTCCAGG < 41bp 0.593142420133822 0.796081993637969 0.16925654 0.27017206 prediction 0.405879147008294 Functional Gain - ABCF3 ENSG00000161204 UTR3 Human protein_coding chr3:183911546 chr3:183911548 . . 0 23 hm5C_associated_SNPs_128309 0 0 0 1 183911539 183911564 mRNA hsa-miR-122 ABCF3 miRanda miRanda
9866 chr10 1043236 1043236 1 + C A LUSC 1043232 + 1043212 1043252 41 GTACCCAAATGTTGGGAAGTCCAGCTTCATCAACAAGGTTG GTACCCAAATGTTGGGAAGTCCAGATTCATCAACAAGGTTG < 41bp 0.289768171490926 0.702913451101423 0.22294837 0.25853664 prediction 0.405826902202845 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1043232 chr10:1043236 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_128318 0 0 1 2 1043216 1043236 mRNA hsa-miR-378 GTPBP4 miRanda miRanda
9867 chr10 1043236 1043236 1 + C A LUSC 1043232 + 1043212 1043252 41 GTACCCAAATGTTGGGAAGTCCAGCTTCATCAACAAGGTTG GTACCCAAATGTTGGGAAGTCCAGATTCATCAACAAGGTTG < 41bp 0.289768171490926 0.702913451101423 0.22294837 0.25853664 prediction 0.405826902202845 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1043232 chr10:1043236 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_128318 0 0 1 2 1043215 1043236 mRNA hsa-miR-422a GTPBP4 miRanda miRanda
9868 chr19 7704679 7704679 1 + A G THYM 7704676 + 7704656 7704696 41 GTCTGGAGGCCATTTATTTGCTGAGCCCCACGGAGAAGGTG GTCTGGAGGCCATTTATTTGCTGGGCCCCACGGAGAAGGTG < 41bp 0.617909693585826 0.820804805631461 0.07239708 0.10686427 prediction 0.405790224091271 Functional Gain - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7704676 chr19:7704679 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_128328 0 0 1 1 7704665 7704683 mRNA hsa-miR-24 STXBP2 miRanda miRanda
9869 chr12 113535746 113535746 1 + C G rs188013302 113535745 + 113535725 113535765 41 GCTGCCACGGTGGGAGTCAGCCAAGATTTAAAGGGATGCCA GCTGCCACGGTGGGAGTCAGCGAAGATTTAAAGGGATGCCA < 41bp 0.439810280311242 0.702889826483541 0.21864825 0.43906024 prediction 0.405779652967082 Functional Gain - DTX1 ENSG00000135144 UTR3 Human protein_coding chr12:113535745 chr12:113535746 . . 0 22 hm5C_associated_SNPs_128332 0 0 0 3 113535741 113535761 mRNA hsa-miR-204 DTX1 miRanda miRanda
9870 chr12 113535746 113535746 1 + C G rs188013302 113535745 + 113535725 113535765 41 GCTGCCACGGTGGGAGTCAGCCAAGATTTAAAGGGATGCCA GCTGCCACGGTGGGAGTCAGCGAAGATTTAAAGGGATGCCA < 41bp 0.439810280311242 0.702889826483541 0.21864825 0.43906024 prediction 0.405779652967082 Functional Gain - DTX1 ENSG00000135144 UTR3 Human protein_coding chr12:113535745 chr12:113535746 . . 0 22 hm5C_associated_SNPs_128332 0 0 0 3 113535742 113535761 mRNA hsa-miR-211 DTX1 miRanda miRanda
9871 chr12 113535746 113535746 1 + C G rs188013302 113535745 + 113535725 113535765 41 GCTGCCACGGTGGGAGTCAGCCAAGATTTAAAGGGATGCCA GCTGCCACGGTGGGAGTCAGCGAAGATTTAAAGGGATGCCA < 41bp 0.439810280311242 0.702889826483541 0.21864825 0.43906024 prediction 0.405779652967082 Functional Gain - DTX1 ENSG00000135144 UTR3 Human protein_coding chr12:113535745 chr12:113535746 . . 0 22 hm5C_associated_SNPs_128332 0 0 0 3 113535742 113535764 mRNA hsa-miR-324-5p DTX1 miRanda miRanda
9872 chr18 3896631 3896631 1 + A G rs147452457 3896628 + 3896608 3896648 41 AGACTCAGAACATGGTACCCCAAAGTATGGCACCTTGGTGT AGACTCAGAACATGGTACCCCAAGGTATGGCACCTTGGTGT < 41bp 0.590821933291921 0.793708961406487 0.29131415 0.31635016 prediction 0.405774056229131 Functional Gain - DLGAP1-AS3 ENSG00000263724 ncRNA_exonic Human antisense chr18:3896628 chr18:3896631 . . 0 24 hm5C_associated_SNPs_128335 0 0 0 1 3896626 3896654 mRNA hsa-miR-377 LOC201477 miRanda miRanda
9873 chrX 35937926 35937926 1 + C G rs141633156 35937922 + 35937902 35937942 41 ACCGAGAGGGCAGCCATGAACACCCAAAAGGGTTCCCTCAC ACCGAGAGGGCAGCCATGAACACCGAAAAGGGTTCCCTCAC < 41bp 0.677139929545123 0.879981750523647 0.09432781 0.1299175 prediction 0.405683641957049 Functional Gain - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35937922 chrX:35937926 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_128363 0 0 0 1 35937921 35937943 mRNA hsa-miR-491-5p CXorf22 miRanda miRanda
9874 chr18 13752398 13752398 1 + T C UCEC 13752396 + 13752376 13752416 41 TATGAACATGCAGCAAAGTACATGAAGAACAGTCAAGTAAG TATGAACATGCAGCAAAGTACACGAAGAACAGTCAAGTAAG < 41bp 0.484113736778981 0.702799706218672 0.017598659 0.04216683 prediction 0.405599412437345 Functional Gain - RNMT ENSG00000101654 CDS Human protein_coding chr18:13752396 chr18:13752398 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_128398 0 0 1 1 13752391 13752412 mRNA hsa-miR-134 RNMT miRanda miRanda
9875 chr11 65715203 65715203 1 + C T rs117506262 65715202 + 65715182 65715222 41 AGCCCCAGCTTCAACAACCTCCGAAGGCGACAATGGAGGAA AGCCCCAGCTTCAACAACCTCTGAAGGCGACAATGGAGGAA < 41bp 0.592063191694575 0.794842456409127 0.8790275 0.60406977 prediction 0.405558529429104 Functional Gain - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65715202 chr11:65715203 unknown 0.000 0 22 hm5C_associated_SNPs_128410 0 0 0 1 65715194 65715220 mRNA hsa-miR-136 TSGA10IP miRanda miRanda
9876 chr1 40422876 40422876 1 + C A LGG 40422872 + 40422852 40422892 41 CTGGGTTTCTTCCTTCAGATCTACCTATTGGATGTGGCTCA CTGGGTTTCTTCCTTCAGATCTACATATTGGATGTGGCTCA < 41bp 0.278502054267664 0.702778841979663 0.07763156 0.75260186 prediction 0.405557683959325 Functional Gain - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40422872 chr1:40422876 nonsynonymous SNV 0.991 5 25 hm5C_associated_SNPs_128411 0 0 0 1 40422855 40422877 mRNA hsa-miR-379 MFSD2A miRanda miRanda
9877 chrX 77378799 77378799 1 + T C COAD 77378796 + 77378776 77378816 41 ACCTTGCCTGTTGACTTTGTCACTGCTGACAAGTTTGATGA ACCTTGCCTGTTGACTTTGTCACCGCTGACAAGTTTGATGA < 41bp 0.478727490502122 0.702686356415055 0.34515518 0.3950351 prediction 0.40537271283011 Functional Gain - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378796 chrX:77378799 synonymous SNV . 0 24 hm5C_associated_SNPs_128468 0 0 1 4 77378784 77378805 mRNA hsa-miR-27a PGK1 miRanda miRanda
9878 chrX 77378799 77378799 1 + T C COAD 77378796 + 77378776 77378816 41 ACCTTGCCTGTTGACTTTGTCACTGCTGACAAGTTTGATGA ACCTTGCCTGTTGACTTTGTCACCGCTGACAAGTTTGATGA < 41bp 0.478727490502122 0.702686356415055 0.34515518 0.3950351 prediction 0.40537271283011 Functional Gain - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378796 chrX:77378799 synonymous SNV . 0 24 hm5C_associated_SNPs_128468 0 0 1 4 77378784 77378805 mRNA hsa-miR-27b PGK1 miRanda miRanda
9879 chrX 77378799 77378799 1 + T C COAD 77378796 + 77378776 77378816 41 ACCTTGCCTGTTGACTTTGTCACTGCTGACAAGTTTGATGA ACCTTGCCTGTTGACTTTGTCACCGCTGACAAGTTTGATGA < 41bp 0.478727490502122 0.702686356415055 0.34515518 0.3950351 prediction 0.40537271283011 Functional Gain - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378796 chrX:77378799 synonymous SNV . 0 24 hm5C_associated_SNPs_128468 0 0 1 4 77378778 77378800 mRNA hsa-miR-130a PGK1 miRanda miRanda
9880 chrX 77378799 77378799 1 + T C COAD 77378796 + 77378776 77378816 41 ACCTTGCCTGTTGACTTTGTCACTGCTGACAAGTTTGATGA ACCTTGCCTGTTGACTTTGTCACCGCTGACAAGTTTGATGA < 41bp 0.478727490502122 0.702686356415055 0.34515518 0.3950351 prediction 0.40537271283011 Functional Gain - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378796 chrX:77378799 synonymous SNV . 0 24 hm5C_associated_SNPs_128468 0 0 1 4 77378778 77378800 mRNA hsa-miR-130b PGK1 miRanda miRanda
9881 chr11 119032880 119032880 1 + C T rs183357592 119032879 + 119032859 119032899 41 CAGGAACTGCAGGTGTCTACCCCCAAGTCTTCCCTCCTCCC CAGGAACTGCAGGTGTCTACCTCCAAGTCTTCCCTCCTCCC < 41bp 0.545460851656734 0.748143485848792 0.54354316 0.96241224 prediction 0.405365268384115 Functional Gain - ABCG4 ENSG00000172350 UTR3 Human protein_coding chr11:119032879 chr11:119032880 . . 0 22 hm5C_associated_SNPs_128473 0 0 0 2 119032870 119032892 mRNA hsa-miR-7 ABCG4 miRanda miRanda
9882 chr11 119032880 119032880 1 + C T rs183357592 119032879 + 119032859 119032899 41 CAGGAACTGCAGGTGTCTACCCCCAAGTCTTCCCTCCTCCC CAGGAACTGCAGGTGTCTACCTCCAAGTCTTCCCTCCTCCC < 41bp 0.545460851656734 0.748143485848792 0.54354316 0.96241224 prediction 0.405365268384115 Functional Gain - ABCG4 ENSG00000172350 UTR3 Human protein_coding chr11:119032879 chr11:119032880 . . 0 22 hm5C_associated_SNPs_128473 0 0 0 2 119032859 119032880 mRNA hsa-miR-379 ABCG4 miRanda miRanda
9883 chr2 27258152 27258152 1 + T C GBM 27258150 + 27258130 27258170 41 CCACGCTGAGCCAGCATACTCATGGTAAGTCCTTCCAGCTT CCACGCTGAGCCAGCATACTCACGGTAAGTCCTTCCAGCTT < 41bp 0.651031505630218 0.853700011258225 0.9167681 0.82741743 prediction 0.405337011256014 Functional Gain - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27258150 chr2:27258152 synonymous SNV . 0 23 hm5C_associated_SNPs_128481 0 0 1 1 27258132 27258153 mRNA hsa-miR-433 TMEM214 miRanda miRanda
9884 chr8 39873057 39873057 1 + T G COAD 39873054 + 39873034 39873074 41 CAGGGGCACAGGTGGAACCGCAGTTATGAGCTTTCTTAAGA CAGGGGCACAGGTGGAACCGCAGGTATGAGCTTTCTTAAGA < 41bp 0.297587123648955 0.702663339811802 0.37574878 0.9001415 prediction 0.405326679623604 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39873054 chr8:39873057 nonsynonymous SNV 0.016 2 24 hm5C_associated_SNPs_128486 0 0 0 1 39873044 39873064 mRNA hsa-miR-371-5p IDO2 miRanda miRanda
9885 chr15 78841353 78841353 1 + T C rs1052035 78841350 + 78841330 78841370 41 AAAGCAGTCCTACTCTTCCACACTAGGAAGGCTTTACTTTT AAAGCAGTCCTACTCTTCCACACCAGGAAGGCTTTACTTTT < 41bp 0.502241297093748 0.704818560597686 0.105823606 0.113399684 prediction 0.405154527007877 Functional Gain - PSMA4 ENSG00000041357 UTR3 Human protein_coding chr15:78841350 chr15:78841353 . . 0 24 hm5C_associated_SNPs_128517 0 0 1 1 78841340 78841359 mRNA hsa-miR-384 PSMA4 miRanda miRanda
9886 chr7 92085780 92085780 1 + C T SKCM 92085779 + 92085759 92085799 41 GTCACGGTCATCACCATTTCCCACAGTTCCCACCAGACCAG GTCACGGTCATCACCATTTCCTACAGTTCCCACCAGACCAG < 41bp 0.643314018559139 0.845871780724251 0.04318446 0.07347229 prediction 0.405115524330224 Functional Gain - GATAD1 ENSG00000157259 CDS Human protein_coding chr7:92085779 chr7:92085780 synonymous SNV . 0 22 hm5C_associated_SNPs_128532 0 0 1 1 92085767 92085789 mRNA hsa-miR-206 GATAD1 miRanda miRanda
9887 chr17 80443439 80443439 1 + C A STAD 80443435 + 80443415 80443455 41 GGTGGTGTTACGCTTTGCTGCAGCCTATGGCTTTCGAAACA GGTGGTGTTACGCTTTGCTGCAGCATATGGCTTTCGAAACA < 41bp 0.297718362047749 0.702532215841334 0.13809645 0.14378083 prediction 0.405064431682669 Functional Gain - NARF ENSG00000141562 CDS Human protein_coding chr17:80443435 chr17:80443439 synonymous SNV . 0 25 hm5C_associated_SNPs_128545 0 0 1 1 80443419 80443440 mRNA hsa-miR-24 NARF miRanda miRanda
9888 chrX 54841194 54841194 1 + A G READ 54841191 + 54841171 54841211 41 AGACCAGCAAGATGAAAGTCCTCAAGTTTGCCTGCAAGGTA AGACCAGCAAGATGAAAGTCCTCGAGTTTGCCTGCAAGGTA < 41bp 0.620388740954026 0.822800715575913 0.17961636 0.2052004 prediction 0.404823949243774 Functional Gain - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54841191 chrX:54841194 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_128607 0 0 1 1 54841191 54841208 mRNA hsa-miR-431 MAGED2 miRanda miRanda
9889 chr1 246953992 246953992 1 + C G rs115230764 246953991 + 246953971 246954011 41 ACCAAATGCTGCAGCTTTGTCCTGGTGGTGATGGGCACCCC ACCAAATGCTGCAGCTTTGTCGTGGTGGTGATGGGCACCCC < 41bp 0.383109007524298 0.70240393479128 0.80238456 0.9206598 prediction 0.404807869582561 Functional Gain - LINC01341 ENSG00000223519;ENSG00000227953 ncRNA_exonic Human other chr1:246953991 chr1:246953992 . . 0 22 hm5C_associated_SNPs_128613 0 0 0 1 246953981 246954002 mRNA hsa-miR-197 LOC149134 miRanda miRanda
9890 chr7 101200790 101200790 1 + C A UCEC 101200789 + 101200769 101200809 41 CCTGGACAGAAGAGCGTGGACCAGGCCAGCAGCAGGAAGTG CCTGGACAGAAGAGCGTGGACAAGGCCAGCAGCAGGAAGTG < 41bp 0.635520396315377 0.83784717743061 0.46697965 0.40630037 prediction 0.404653562230467 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101200789 chr7:101200790 nonsynonymous SNV 0.016 0 22 hm5C_associated_SNPs_128646 0 0 0 1 101200788 101200805 mRNA hsa-miR-370 EMID2 miRanda miRanda
9891 chrX 52658021 52658021 1 + C T rs782577044 52658020 + 52658000 52658040 41 AGCTGGCCTCTCTTCTGTTACCGGGGCCACTCCCATGGCTT AGCTGGCCTCTCTTCTGTTACTGGGGCCACTCCCATGGCTT < 41bp 0.557291127967522 0.759255979483318 0.9491529 0.9066988 prediction 0.403929703031591 Functional Gain - SSX8 ENSG00000157965 ncRNA_exonic Human unprocessed_pseudogene chrX:52658020 chrX:52658021 . . 0 22 hm5C_associated_SNPs_128821 0 0 0 1 52657997 52658021 mRNA hsa-miR-194 SSX8 miRanda miRanda
9892 chr6 137191098 137191098 1 + T C UCEC 137191095 + 137191075 137191115 41 CTTAAGGAATGTACGACAACCAGTGTTTGAACTTCTTGGTC CTTAAGGAATGTACGACAACCAGCGTTTGAACTTCTTGGTC < 41bp 0.539455254419811 0.741377088346192 0.15180966 0.30984318 prediction 0.403843667852763 Functional Gain - PEX7 ENSG00000112357 CDS Human protein_coding chr6:137191095 chr6:137191098 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_128852 0 0 1 2 137191081 137191102 mRNA hsa-miR-141 PEX7 miRanda miRanda
9893 chr6 137191098 137191098 1 + T C UCEC 137191095 + 137191075 137191115 41 CTTAAGGAATGTACGACAACCAGTGTTTGAACTTCTTGGTC CTTAAGGAATGTACGACAACCAGCGTTTGAACTTCTTGGTC < 41bp 0.539455254419811 0.741377088346192 0.15180966 0.30984318 prediction 0.403843667852763 Functional Gain - PEX7 ENSG00000112357 CDS Human protein_coding chr6:137191095 chr6:137191098 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_128852 0 0 1 2 137191079 137191102 mRNA hsa-miR-200a PEX7 miRanda miRanda
9894 chr1 233765504 233765504 1 + A G rs16859323 233765501 + 233765481 233765521 41 AGGGTGTGATGCTCCGTAGTCGCAGGGATGAAGGAAAACCA AGGGTGTGATGCTCCGTAGTCGCGGGGATGAAGGAAAACCA < 41bp 0.570580510343799 0.772447376131244 0.8907572 0.9056415 prediction 0.403733731574889 Functional Gain - KCNK1 ENSG00000135750 UTR5 Human protein_coding chr1:233765501 chr1:233765504 . . 0 24 hm5C_associated_SNPs_128876 0 0 1 1 233765482 233765506 mRNA hsa-miR-378 KCNK1 miRanda miRanda
9895 chr20 31830941 31830941 1 + C A rs77085264 31830937 + 31830917 31830957 41 TTCCCCCAACAGAACTATTTCTTGCTGCTCAATCCATTTCC TTCCCCCAACAGAACTATTTCTTGATGCTCAATCCATTTCC < 41bp 0.319001000362384 0.701733350072959 0.023026407 0.10164958 prediction 0.403466700145917 Functional Gain - BPIFA1 ENSG00000198183 UTR3 Human protein_coding chr20:31830937 chr20:31830941 . . 0 25 hm5C_associated_SNPs_128946 0 0 0 12 31830929 31830946 mRNA hsa-miR-15a PLUNC miRanda miRanda
9896 chr20 31830941 31830941 1 + C A rs77085264 31830937 + 31830917 31830957 41 TTCCCCCAACAGAACTATTTCTTGCTGCTCAATCCATTTCC TTCCCCCAACAGAACTATTTCTTGATGCTCAATCCATTTCC < 41bp 0.319001000362384 0.701733350072959 0.023026407 0.10164958 prediction 0.403466700145917 Functional Gain - BPIFA1 ENSG00000198183 UTR3 Human protein_coding chr20:31830937 chr20:31830941 . . 0 25 hm5C_associated_SNPs_128946 0 0 0 12 31830925 31830946 mRNA hsa-miR-15a PLUNC miRanda miRanda
9897 chr20 31830941 31830941 1 + C A rs77085264 31830937 + 31830917 31830957 41 TTCCCCCAACAGAACTATTTCTTGCTGCTCAATCCATTTCC TTCCCCCAACAGAACTATTTCTTGATGCTCAATCCATTTCC < 41bp 0.319001000362384 0.701733350072959 0.023026407 0.10164958 prediction 0.403466700145917 Functional Gain - BPIFA1 ENSG00000198183 UTR3 Human protein_coding chr20:31830937 chr20:31830941 . . 0 25 hm5C_associated_SNPs_128946 0 0 0 12 31830929 31830946 mRNA hsa-miR-16 PLUNC miRanda miRanda
9898 chr20 31830941 31830941 1 + C A rs77085264 31830937 + 31830917 31830957 41 TTCCCCCAACAGAACTATTTCTTGCTGCTCAATCCATTTCC TTCCCCCAACAGAACTATTTCTTGATGCTCAATCCATTTCC < 41bp 0.319001000362384 0.701733350072959 0.023026407 0.10164958 prediction 0.403466700145917 Functional Gain - BPIFA1 ENSG00000198183 UTR3 Human protein_coding chr20:31830937 chr20:31830941 . . 0 25 hm5C_associated_SNPs_128946 0 0 0 12 31830926 31830946 mRNA hsa-miR-16 PLUNC miRanda miRanda
9899 chr20 31830941 31830941 1 + C A rs77085264 31830937 + 31830917 31830957 41 TTCCCCCAACAGAACTATTTCTTGCTGCTCAATCCATTTCC TTCCCCCAACAGAACTATTTCTTGATGCTCAATCCATTTCC < 41bp 0.319001000362384 0.701733350072959 0.023026407 0.10164958 prediction 0.403466700145917 Functional Gain - BPIFA1 ENSG00000198183 UTR3 Human protein_coding chr20:31830937 chr20:31830941 . . 0 25 hm5C_associated_SNPs_128946 0 0 0 12 31830929 31830946 mRNA hsa-miR-15b PLUNC miRanda miRanda
9900 chr20 31830941 31830941 1 + C A rs77085264 31830937 + 31830917 31830957 41 TTCCCCCAACAGAACTATTTCTTGCTGCTCAATCCATTTCC TTCCCCCAACAGAACTATTTCTTGATGCTCAATCCATTTCC < 41bp 0.319001000362384 0.701733350072959 0.023026407 0.10164958 prediction 0.403466700145917 Functional Gain - BPIFA1 ENSG00000198183 UTR3 Human protein_coding chr20:31830937 chr20:31830941 . . 0 25 hm5C_associated_SNPs_128946 0 0 0 12 31830925 31830946 mRNA hsa-miR-15b PLUNC miRanda miRanda
9901 chr20 31830941 31830941 1 + C A rs77085264 31830937 + 31830917 31830957 41 TTCCCCCAACAGAACTATTTCTTGCTGCTCAATCCATTTCC TTCCCCCAACAGAACTATTTCTTGATGCTCAATCCATTTCC < 41bp 0.319001000362384 0.701733350072959 0.023026407 0.10164958 prediction 0.403466700145917 Functional Gain - BPIFA1 ENSG00000198183 UTR3 Human protein_coding chr20:31830937 chr20:31830941 . . 0 25 hm5C_associated_SNPs_128946 0 0 0 12 31830929 31830946 mRNA hsa-miR-195 PLUNC miRanda miRanda
9902 chr20 31830941 31830941 1 + C A rs77085264 31830937 + 31830917 31830957 41 TTCCCCCAACAGAACTATTTCTTGCTGCTCAATCCATTTCC TTCCCCCAACAGAACTATTTCTTGATGCTCAATCCATTTCC < 41bp 0.319001000362384 0.701733350072959 0.023026407 0.10164958 prediction 0.403466700145917 Functional Gain - BPIFA1 ENSG00000198183 UTR3 Human protein_coding chr20:31830937 chr20:31830941 . . 0 25 hm5C_associated_SNPs_128946 0 0 0 12 31830927 31830946 mRNA hsa-miR-195 PLUNC miRanda miRanda
9903 chr20 31830941 31830941 1 + C A rs77085264 31830937 + 31830917 31830957 41 TTCCCCCAACAGAACTATTTCTTGCTGCTCAATCCATTTCC TTCCCCCAACAGAACTATTTCTTGATGCTCAATCCATTTCC < 41bp 0.319001000362384 0.701733350072959 0.023026407 0.10164958 prediction 0.403466700145917 Functional Gain - BPIFA1 ENSG00000198183 UTR3 Human protein_coding chr20:31830937 chr20:31830941 . . 0 25 hm5C_associated_SNPs_128946 0 0 0 12 31830929 31830946 mRNA hsa-miR-424 PLUNC miRanda miRanda
9904 chr20 31830941 31830941 1 + C A rs77085264 31830937 + 31830917 31830957 41 TTCCCCCAACAGAACTATTTCTTGCTGCTCAATCCATTTCC TTCCCCCAACAGAACTATTTCTTGATGCTCAATCCATTTCC < 41bp 0.319001000362384 0.701733350072959 0.023026407 0.10164958 prediction 0.403466700145917 Functional Gain - BPIFA1 ENSG00000198183 UTR3 Human protein_coding chr20:31830937 chr20:31830941 . . 0 25 hm5C_associated_SNPs_128946 0 0 0 12 31830924 31830946 mRNA hsa-miR-424 PLUNC miRanda miRanda
9905 chr20 31830941 31830941 1 + C A rs77085264 31830937 + 31830917 31830957 41 TTCCCCCAACAGAACTATTTCTTGCTGCTCAATCCATTTCC TTCCCCCAACAGAACTATTTCTTGATGCTCAATCCATTTCC < 41bp 0.319001000362384 0.701733350072959 0.023026407 0.10164958 prediction 0.403466700145917 Functional Gain - BPIFA1 ENSG00000198183 UTR3 Human protein_coding chr20:31830937 chr20:31830941 . . 0 25 hm5C_associated_SNPs_128946 0 0 0 12 31830929 31830946 mRNA hsa-miR-497 PLUNC miRanda miRanda
9906 chr20 31830941 31830941 1 + C A rs77085264 31830937 + 31830917 31830957 41 TTCCCCCAACAGAACTATTTCTTGCTGCTCAATCCATTTCC TTCCCCCAACAGAACTATTTCTTGATGCTCAATCCATTTCC < 41bp 0.319001000362384 0.701733350072959 0.023026407 0.10164958 prediction 0.403466700145917 Functional Gain - BPIFA1 ENSG00000198183 UTR3 Human protein_coding chr20:31830937 chr20:31830941 . . 0 25 hm5C_associated_SNPs_128946 0 0 0 12 31830926 31830946 mRNA hsa-miR-497 PLUNC miRanda miRanda
9907 chr15 77241568 77241568 1 + T C rs1711018 77241565 + 77241545 77241585 41 CTATCATGATGAGCTTTAATCTCTGAGCCTGTCTCAGTAGA CTATCATGATGAGCTTTAATCTCCGAGCCTGTCTCAGTAGA < 41bp 0.48740061590044 0.701721550364754 0.27889997 0.84566617 prediction 0.403443100729509 Functional Gain - RCN2 ENSG00000117906 UTR3 Human protein_coding chr15:77241565 chr15:77241568 . . 0 24 hm5C_associated_SNPs_128952 0 0 1 1 77241564 77241574 mRNA hsa-miR-24 RCN2 miRanda miRanda
9908 chr16 67418957 67418957 1 + A G rs16957415 67418954 + 67418934 67418974 41 AGACTGGTCAGTATCTAATACAGAGCGTCTTGGATGCTGCC AGACTGGTCAGTATCTAATACAGGGCGTCTTGGATGCTGCC < 41bp 0.451423248179283 0.701659133806524 0.23401108 0.76622784 prediction 0.403318267613048 Functional Gain - LRRC36 ENSG00000159708 CDS Human protein_coding chr16:67418954 chr16:67418957 nonsynonymous SNV 0.830 0 24 hm5C_associated_SNPs_128981 0 0 0 2 67418953 67418974 mRNA hsa-miR-103 LRRC36 miRanda miRanda
9909 chr16 67418957 67418957 1 + A G rs16957415 67418954 + 67418934 67418974 41 AGACTGGTCAGTATCTAATACAGAGCGTCTTGGATGCTGCC AGACTGGTCAGTATCTAATACAGGGCGTCTTGGATGCTGCC < 41bp 0.451423248179283 0.701659133806524 0.23401108 0.76622784 prediction 0.403318267613048 Functional Gain - LRRC36 ENSG00000159708 CDS Human protein_coding chr16:67418954 chr16:67418957 nonsynonymous SNV 0.830 0 24 hm5C_associated_SNPs_128981 0 0 0 2 67418953 67418974 mRNA hsa-miR-107 LRRC36 miRanda miRanda
9910 chr5 180377239 180377239 1 + C T SKCM 180377238 + 180377218 180377258 41 CCCCGTTTTATCAGCGTCTTCCCCAGGACCCCACCTACAAA CCCCGTTTTATCAGCGTCTTCTCCAGGACCCCACCTACAAA < 41bp 0.63769151282951 0.839274902623994 0.08370194 0.94381106 prediction 0.403166779588968 Functional Gain - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180377238 chr5:180377239 nonsynonymous SNV 0.003 2 22 hm5C_associated_SNPs_129023 0 0 0 1 180377219 180377240 mRNA hsa-miR-7 BTNL8 miRanda miRanda
9911 chr18 12277286 12277286 1 + C A rs75315911 12277285 + 12277265 12277305 41 GATAGGGATGCAGGCTGTCGCCGGCTCTTGAGCCAAACACT GATAGGGATGCAGGCTGTCGCAGGCTCTTGAGCCAAACACT < 41bp 0.43586509390777 0.701461896907568 0.62724894 0.90103996 prediction 0.402923793815136 Functional Gain - CIDEA ENSG00000176194 UTR3 Human protein_coding chr18:12277285 chr18:12277286 . . 0 22 hm5C_associated_SNPs_129081 0 0 0 1 12277273 12277295 mRNA hsa-miR-335 CIDEA miRanda miRanda
9912 chr7 6063241 6063241 1 - A G STAD 6063244 - 6063224 6063264 41 CACCTCTGCACATTGGCTGGCACTGTCACACTGCAGCCTCC CACCTCTGCACATTGGCTGGCACCGTCACACTGCAGCCTCC < 41bp 0.509795978620741 0.711229699961196 0.10232374 0.13184136 prediction 0.40286744268091 Functional Gain - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6063244 chr7:6063241 synonymous SNV . 0 24 hm5C_associated_SNPs_129092 0 0 1 2 6063224 6063243 mRNA hsa-miR-485-5p EIF2AK1 miRanda miRanda
9913 chr7 6063241 6063241 1 - A G STAD 6063244 - 6063224 6063264 41 CACCTCTGCACATTGGCTGGCACTGTCACACTGCAGCCTCC CACCTCTGCACATTGGCTGGCACCGTCACACTGCAGCCTCC < 41bp 0.509795978620741 0.711229699961196 0.10232374 0.13184136 prediction 0.40286744268091 Functional Gain - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6063244 chr7:6063241 synonymous SNV . 0 24 hm5C_associated_SNPs_129092 0 0 1 2 6063235 6063254 mRNA hsa-miR-542-3p EIF2AK1 miRanda miRanda
9914 chr13 22275929 22275929 1 + C G rs147999718 22275925 + 22275905 22275945 41 GAGCGAGAGCAAAAGGACTGCGGCCTGATGCATGCTGGAAA GAGCGAGAGCAAAAGGACTGCGGCGTGATGCATGCTGGAAA < 41bp 0.411346120195759 0.701321995366698 0.6717846 0.83990383 prediction 0.402643990733396 Functional Gain - FGF9 ENSG00000102678 UTR3 Human protein_coding chr13:22275925 chr13:22275929 . . 0 25 hm5C_associated_SNPs_129158 1 0 1 1 22275922 22275943 mRNA hsa-miR-338-3p FGF9 miRanda miRanda
9915 chr19 42083694 42083694 1 + A G LGG 42083691 + 42083671 42083711 41 CTTTACAGCTATGGCTGGTACAAAGGGAAAACGGTGGAGCC CTTTACAGCTATGGCTGGTACAAGGGGAAAACGGTGGAGCC < 41bp 0.629900096872141 0.831208791875554 0.14709592 0.8814262 prediction 0.402617390006826 Functional Gain - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42083691 chr19:42083694 synonymous SNV . 0 24 hm5C_associated_SNPs_129167 0 0 0 2 42083676 42083699 mRNA hsa-miR-204 CEACAM21 miRanda miRanda
9916 chr19 42083694 42083694 1 + A G LGG 42083691 + 42083671 42083711 41 CTTTACAGCTATGGCTGGTACAAAGGGAAAACGGTGGAGCC CTTTACAGCTATGGCTGGTACAAGGGGAAAACGGTGGAGCC < 41bp 0.629900096872141 0.831208791875554 0.14709592 0.8814262 prediction 0.402617390006826 Functional Gain - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42083691 chr19:42083694 synonymous SNV . 0 24 hm5C_associated_SNPs_129167 0 0 0 2 42083676 42083699 mRNA hsa-miR-211 CEACAM21 miRanda miRanda
9917 chr6 17292010 17292010 1 + C T BRCA 17292009 + 17291989 17292029 41 TACCTGCCCACTATGTCTATCCGCAGGCTTTTGTGCAGCCG TACCTGCCCACTATGTCTATCTGCAGGCTTTTGTGCAGCCG < 41bp 0.634303819615287 0.835534605745844 0.27365136 0.24901524 prediction 0.402461572261115 Functional Gain - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292009 chr6:17292010 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_129207 0 0 0 1 17291987 17292011 mRNA hsa-miR-7 RBM24 miRanda miRanda
9918 chr6 39033979 39033979 1 + C A LUAD 39033975 + 39033955 39033995 41 GTCCCCCGTGTGCCACAGAGCTCCCCGGAGGAGCAGCTCCT GTCCCCCGTGTGCCACAGAGCTCCACGGAGGAGCAGCTCCT < 41bp 0.267965719425863 0.701210800261319 0.1023235 0.26235536 prediction 0.402421600522637 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39033975 chr6:39033979 nonsynonymous SNV 0.140 0 25 hm5C_associated_SNPs_129217 0 0 0 2 39033975 39033996 mRNA hsa-miR-28-5p GLP1R miRanda miRanda
9919 chr6 39033979 39033979 1 + C A LUAD 39033975 + 39033955 39033995 41 GTCCCCCGTGTGCCACAGAGCTCCCCGGAGGAGCAGCTCCT GTCCCCCGTGTGCCACAGAGCTCCACGGAGGAGCAGCTCCT < 41bp 0.267965719425863 0.701210800261319 0.1023235 0.26235536 prediction 0.402421600522637 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39033975 chr6:39033979 nonsynonymous SNV 0.140 0 25 hm5C_associated_SNPs_129217 0 0 0 2 39033974 39033996 mRNA hsa-miR-708 GLP1R miRanda miRanda
9920 chr15 51295402 51295402 1 + T A rs529440596 51295400 + 51295380 51295420 41 ACTAACAGTTGTAGGAGATCCATGAGCATGCTGGATATTGA ACTAACAGTTGTAGGAGATCCAAGAGCATGCTGGATATTGA < 41bp 0.52642065677092 0.727548969683389 0.22847307 0.36684772 prediction 0.402256625824939 Functional Gain - AP4E1 ENSG00000081014 UTR3 Human protein_coding chr15:51295400 chr15:51295402 . . 0 23 hm5C_associated_SNPs_129264 0 0 1 1 51295390 51295414 mRNA hsa-miR-338-3p AP4E1 miRanda miRanda
9921 chr15 45567871 45567871 1 + T C rs2458225 45567869 + 45567849 45567889 41 TTGGGCCGGGCTCAGTGGCTCATGCCTGTAATCCCAGCACT TTGGGCCGGGCTCAGTGGCTCACGCCTGTAATCCCAGCACT < 41bp 0.486833513627867 0.70101825821146 0.05205795 0.042957753 prediction 0.402036516422919 Functional Gain - LOC101928414 ENSG00000259520 ncRNA_intronic Human antisense chr15:45567869 chr15:45567871 . . 0 23 hm5C_associated_SNPs_129328 0 0 0 5 45567870 45567892 mRNA hsa-miR-17 SLC28A2 miRanda miRanda
9922 chr15 45567871 45567871 1 + T C rs2458225 45567869 + 45567849 45567889 41 TTGGGCCGGGCTCAGTGGCTCATGCCTGTAATCCCAGCACT TTGGGCCGGGCTCAGTGGCTCACGCCTGTAATCCCAGCACT < 41bp 0.486833513627867 0.70101825821146 0.05205795 0.042957753 prediction 0.402036516422919 Functional Gain - LOC101928414 ENSG00000259520 ncRNA_intronic Human antisense chr15:45567869 chr15:45567871 . . 0 23 hm5C_associated_SNPs_129328 0 0 0 5 45567870 45567892 mRNA hsa-miR-20a SLC28A2 miRanda miRanda
9923 chr15 45567871 45567871 1 + T C rs2458225 45567869 + 45567849 45567889 41 TTGGGCCGGGCTCAGTGGCTCATGCCTGTAATCCCAGCACT TTGGGCCGGGCTCAGTGGCTCACGCCTGTAATCCCAGCACT < 41bp 0.486833513627867 0.70101825821146 0.05205795 0.042957753 prediction 0.402036516422919 Functional Gain - LOC101928414 ENSG00000259520 ncRNA_intronic Human antisense chr15:45567869 chr15:45567871 . . 0 23 hm5C_associated_SNPs_129328 0 0 0 5 45567870 45567892 mRNA hsa-miR-93 SLC28A2 miRanda miRanda
9924 chr15 45567871 45567871 1 + T C rs2458225 45567869 + 45567849 45567889 41 TTGGGCCGGGCTCAGTGGCTCATGCCTGTAATCCCAGCACT TTGGGCCGGGCTCAGTGGCTCACGCCTGTAATCCCAGCACT < 41bp 0.486833513627867 0.70101825821146 0.05205795 0.042957753 prediction 0.402036516422919 Functional Gain - LOC101928414 ENSG00000259520 ncRNA_intronic Human antisense chr15:45567869 chr15:45567871 . . 0 23 hm5C_associated_SNPs_129328 0 0 0 5 45567870 45567892 mRNA hsa-miR-106a SLC28A2 miRanda miRanda
9925 chr15 45567871 45567871 1 + T C rs2458225 45567869 + 45567849 45567889 41 TTGGGCCGGGCTCAGTGGCTCATGCCTGTAATCCCAGCACT TTGGGCCGGGCTCAGTGGCTCACGCCTGTAATCCCAGCACT < 41bp 0.486833513627867 0.70101825821146 0.05205795 0.042957753 prediction 0.402036516422919 Functional Gain - LOC101928414 ENSG00000259520 ncRNA_intronic Human antisense chr15:45567869 chr15:45567871 . . 0 23 hm5C_associated_SNPs_129328 0 0 0 5 45567870 45567892 mRNA hsa-miR-20b SLC28A2 miRanda miRanda
9926 chr10 46918224 46918224 1 + A G UCEC 46918221 + 46918201 46918241 41 GACTTACTGGCATATGTGTCCTCAAAACATTCCTACCTCAG GACTTACTGGCATATGTGTCCTCGAAACATTCCTACCTCAG < 41bp 0.547738295904664 0.748677150016554 0.21695635 0.37557423 prediction 0.401877708223779 Functional Gain - FAM35BP ENSG00000165874 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:46918221 chr10:46918224 . . 0 24 hm5C_associated_SNPs_129370 0 0 0 12 46918218 46918240 mRNA hsa-let-7a FAM35B miRanda miRanda
9927 chr10 46918224 46918224 1 + A G UCEC 46918221 + 46918201 46918241 41 GACTTACTGGCATATGTGTCCTCAAAACATTCCTACCTCAG GACTTACTGGCATATGTGTCCTCGAAACATTCCTACCTCAG < 41bp 0.547738295904664 0.748677150016554 0.21695635 0.37557423 prediction 0.401877708223779 Functional Gain - FAM35BP ENSG00000165874 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:46918221 chr10:46918224 . . 0 24 hm5C_associated_SNPs_129370 0 0 0 12 46918218 46918240 mRNA hsa-let-7b FAM35B miRanda miRanda
9928 chr10 46918224 46918224 1 + A G UCEC 46918221 + 46918201 46918241 41 GACTTACTGGCATATGTGTCCTCAAAACATTCCTACCTCAG GACTTACTGGCATATGTGTCCTCGAAACATTCCTACCTCAG < 41bp 0.547738295904664 0.748677150016554 0.21695635 0.37557423 prediction 0.401877708223779 Functional Gain - FAM35BP ENSG00000165874 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:46918221 chr10:46918224 . . 0 24 hm5C_associated_SNPs_129370 0 0 0 12 46918218 46918240 mRNA hsa-let-7c FAM35B miRanda miRanda
9929 chr10 46918224 46918224 1 + A G UCEC 46918221 + 46918201 46918241 41 GACTTACTGGCATATGTGTCCTCAAAACATTCCTACCTCAG GACTTACTGGCATATGTGTCCTCGAAACATTCCTACCTCAG < 41bp 0.547738295904664 0.748677150016554 0.21695635 0.37557423 prediction 0.401877708223779 Functional Gain - FAM35BP ENSG00000165874 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:46918221 chr10:46918224 . . 0 24 hm5C_associated_SNPs_129370 0 0 0 12 46918218 46918240 mRNA hsa-let-7d FAM35B miRanda miRanda
9930 chr10 46918224 46918224 1 + A G UCEC 46918221 + 46918201 46918241 41 GACTTACTGGCATATGTGTCCTCAAAACATTCCTACCTCAG GACTTACTGGCATATGTGTCCTCGAAACATTCCTACCTCAG < 41bp 0.547738295904664 0.748677150016554 0.21695635 0.37557423 prediction 0.401877708223779 Functional Gain - FAM35BP ENSG00000165874 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:46918221 chr10:46918224 . . 0 24 hm5C_associated_SNPs_129370 0 0 0 12 46918218 46918240 mRNA hsa-let-7e FAM35B miRanda miRanda
9931 chr10 46918224 46918224 1 + A G UCEC 46918221 + 46918201 46918241 41 GACTTACTGGCATATGTGTCCTCAAAACATTCCTACCTCAG GACTTACTGGCATATGTGTCCTCGAAACATTCCTACCTCAG < 41bp 0.547738295904664 0.748677150016554 0.21695635 0.37557423 prediction 0.401877708223779 Functional Gain - FAM35BP ENSG00000165874 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:46918221 chr10:46918224 . . 0 24 hm5C_associated_SNPs_129370 0 0 0 12 46918221 46918240 mRNA hsa-let-7f FAM35B miRanda miRanda
9932 chr10 46918224 46918224 1 + A G UCEC 46918221 + 46918201 46918241 41 GACTTACTGGCATATGTGTCCTCAAAACATTCCTACCTCAG GACTTACTGGCATATGTGTCCTCGAAACATTCCTACCTCAG < 41bp 0.547738295904664 0.748677150016554 0.21695635 0.37557423 prediction 0.401877708223779 Functional Gain - FAM35BP ENSG00000165874 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:46918221 chr10:46918224 . . 0 24 hm5C_associated_SNPs_129370 0 0 0 12 46918221 46918240 mRNA hsa-miR-98 FAM35B miRanda miRanda
9933 chr10 46918224 46918224 1 + A G UCEC 46918221 + 46918201 46918241 41 GACTTACTGGCATATGTGTCCTCAAAACATTCCTACCTCAG GACTTACTGGCATATGTGTCCTCGAAACATTCCTACCTCAG < 41bp 0.547738295904664 0.748677150016554 0.21695635 0.37557423 prediction 0.401877708223779 Functional Gain - FAM35BP ENSG00000165874 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:46918221 chr10:46918224 . . 0 24 hm5C_associated_SNPs_129370 0 0 0 12 46918219 46918240 mRNA hsa-let-7g FAM35B miRanda miRanda
9934 chr10 46918224 46918224 1 + A G UCEC 46918221 + 46918201 46918241 41 GACTTACTGGCATATGTGTCCTCAAAACATTCCTACCTCAG GACTTACTGGCATATGTGTCCTCGAAACATTCCTACCTCAG < 41bp 0.547738295904664 0.748677150016554 0.21695635 0.37557423 prediction 0.401877708223779 Functional Gain - FAM35BP ENSG00000165874 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:46918221 chr10:46918224 . . 0 24 hm5C_associated_SNPs_129370 0 0 0 12 46918218 46918240 mRNA hsa-let-7i FAM35B miRanda miRanda
9935 chr10 46918224 46918224 1 + A G UCEC 46918221 + 46918201 46918241 41 GACTTACTGGCATATGTGTCCTCAAAACATTCCTACCTCAG GACTTACTGGCATATGTGTCCTCGAAACATTCCTACCTCAG < 41bp 0.547738295904664 0.748677150016554 0.21695635 0.37557423 prediction 0.401877708223779 Functional Gain - FAM35BP ENSG00000165874 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:46918221 chr10:46918224 . . 0 24 hm5C_associated_SNPs_129370 0 0 0 12 46918212 46918234 mRNA hsa-miR-1 FAM35B miRanda miRanda
9936 chr10 46918224 46918224 1 + A G UCEC 46918221 + 46918201 46918241 41 GACTTACTGGCATATGTGTCCTCAAAACATTCCTACCTCAG GACTTACTGGCATATGTGTCCTCGAAACATTCCTACCTCAG < 41bp 0.547738295904664 0.748677150016554 0.21695635 0.37557423 prediction 0.401877708223779 Functional Gain - FAM35BP ENSG00000165874 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:46918221 chr10:46918224 . . 0 24 hm5C_associated_SNPs_129370 0 0 0 12 46918210 46918234 mRNA hsa-miR-206 FAM35B miRanda miRanda
9937 chr10 46918224 46918224 1 + A G UCEC 46918221 + 46918201 46918241 41 GACTTACTGGCATATGTGTCCTCAAAACATTCCTACCTCAG GACTTACTGGCATATGTGTCCTCGAAACATTCCTACCTCAG < 41bp 0.547738295904664 0.748677150016554 0.21695635 0.37557423 prediction 0.401877708223779 Functional Gain - FAM35BP ENSG00000165874 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:46918221 chr10:46918224 . . 0 24 hm5C_associated_SNPs_129370 0 0 0 12 46918215 46918234 mRNA hsa-miR-613 FAM35B miRanda miRanda
9938 chr5 176732936 176732936 1 - G A LIHC 176732937 - 176732917 176732957 41 CTAGAGGAGACCCAGGCTTCCCGGCGGATTTCAGTCCAGCC CTAGAGGAGACCCAGGCTTCCTGGCGGATTTCAGTCCAGCC < 41bp 0.490666541690594 0.700872742156225 0.8832749 0.3910579 prediction 0.40174548431245 Functional Gain - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176732937 chr5:176732936 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_129403 0 0 0 2 176732918 176732937 mRNA hsa-miR-378 MXD3 miRanda miRanda
9939 chr5 176732936 176732936 1 - G A LIHC 176732937 - 176732917 176732957 41 CTAGAGGAGACCCAGGCTTCCCGGCGGATTTCAGTCCAGCC CTAGAGGAGACCCAGGCTTCCTGGCGGATTTCAGTCCAGCC < 41bp 0.490666541690594 0.700872742156225 0.8832749 0.3910579 prediction 0.40174548431245 Functional Gain - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176732937 chr5:176732936 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_129403 0 0 0 2 176732918 176732939 mRNA hsa-miR-422a MXD3 miRanda miRanda
9940 chr19 7832183 7832183 1 + A G rs558705 7832180 + 7832160 7832200 41 ACATGCAGCATTCACAGGAGCACATGAGGAGAGGCCAGCTG ACATGCAGCATTCACAGGAGCACGTGAGGAGAGGCCAGCTG < 41bp 0.467120652966552 0.700811679017462 0.3642154 0.2655247 prediction 0.401623358034923 Functional Gain - CLEC4M ENSG00000104938 intronic Human protein_coding chr19:7832180 chr19:7832183 . . 0 24 hm5C_associated_SNPs_129435 0 0 0 1 7832173 7832197 mRNA hsa-miR-328 CLEC4M miRanda miRanda
9941 chr10 6262697 6262697 1 + C T UCEC 6262696 + 6262676 6262716 41 GTGCAGGACCACATCCAGAGCCGCATCGTGTACTACCTGAT GTGCAGGACCACATCCAGAGCTGCATCGTGTACTACCTGAT < 41bp 0.429275633873863 0.700795037121518 0.17099383 0.17465806 prediction 0.401590074243037 Functional Gain - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6262696 chr10:6262697 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_129449 0 0 1 2 6262694 6262714 mRNA hsa-miR-196a PFKFB3 miRanda miRanda
9942 chr10 6262697 6262697 1 + C T UCEC 6262696 + 6262676 6262716 41 GTGCAGGACCACATCCAGAGCCGCATCGTGTACTACCTGAT GTGCAGGACCACATCCAGAGCTGCATCGTGTACTACCTGAT < 41bp 0.429275633873863 0.700795037121518 0.17099383 0.17465806 prediction 0.401590074243037 Functional Gain - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6262696 chr10:6262697 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_129449 0 0 1 2 6262691 6262714 mRNA hsa-miR-196b PFKFB3 miRanda miRanda
9943 chr6 132047328 132047328 1 + A G COAD 132047325 + 132047305 132047345 41 ATGCCCATGTGGAGTTCATACACAGTCCCCCAGTTGGTAAG ATGCCCATGTGGAGTTCATACACGGTCCCCCAGTTGGTAAG < 41bp 0.62126293279395 0.822005500432825 0.053397983 0.2517013 prediction 0.401485135277751 Functional Gain - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:132047325 chr6:132047328 synonymous SNV . 0 24 hm5C_associated_SNPs_129480 0 0 1 1 132047328 132047340 mRNA hsa-miR-137 ENPP3 miRanda miRanda
9944 chr14 24113673 24113673 1 + T C COAD 24113670 + 24113650 24113690 41 GCTGCTGGGTCTCACTAGAACACTGGCATTGGAGCTGGCCC GCTGCTGGGTCTCACTAGAACACCGGCATTGGAGCTGGCCC < 41bp 0.577154892899184 0.777876871274558 0.0466139 0.039683104 prediction 0.401443956750747 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113670 chr14:24113673 nonsynonymous SNV 0.003 4 24 hm5C_associated_SNPs_129487 0 0 1 2 24113653 24113676 mRNA hsa-miR-199a-5p DHRS2 miRanda miRanda
9945 chr14 24113673 24113673 1 + T C COAD 24113670 + 24113650 24113690 41 GCTGCTGGGTCTCACTAGAACACTGGCATTGGAGCTGGCCC GCTGCTGGGTCTCACTAGAACACCGGCATTGGAGCTGGCCC < 41bp 0.577154892899184 0.777876871274558 0.0466139 0.039683104 prediction 0.401443956750747 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113670 chr14:24113673 nonsynonymous SNV 0.003 4 24 hm5C_associated_SNPs_129487 0 0 1 2 24113653 24113676 mRNA hsa-miR-199b-5p DHRS2 miRanda miRanda
9946 chr22 42666026 42666026 1 + C T rs187166731 42666025 + 42666005 42666045 41 GCACCCAAGGCCTCGCGCGACCAGCAGGTAGACCTTCCCTC GCACCCAAGGCCTCGCGCGACTAGCAGGTAGACCTTCCCTC < 41bp 0.519086392648224 0.719782704881536 0.34788173 0.09727156 prediction 0.401392624466625 Functional Gain - OGFRP1 ENSG00000182057 ncRNA_exonic Human lincRNA chr22:42666025 chr22:42666026 . . 0 22 hm5C_associated_SNPs_129504 0 1 0 1 42666009 42666031 mRNA hsa-miR-370 LOC388906 miRanda miRanda
9947 chr4 159136418 159136418 1 + C G STAD 159136417 + 159136397 159136437 41 TCAATCTGATATTACATTGTCCAAAGTTTTGGCCTTTTGCA TCAATCTGATATTACATTGTCGAAAGTTTTGGCCTTTTGCA < 41bp 0.386363670492667 0.700630565875619 0.02646625 0.24998894 prediction 0.401261131751239 Functional Gain - TMEM144 ENSG00000164124 CDS Human protein_coding chr4:159136417 chr4:159136418 nonsynonymous SNV 0.358 2 22 hm5C_associated_SNPs_129533 0 0 0 1 159136399 159136421 mRNA hsa-miR-182 TMEM144 miRanda miRanda
9948 chr8 36763287 36763287 1 + T C COAD 36763284 + 36763264 36763304 41 TTGATAGCAGTGGGATGTTTCACTGGTGCAAACCAACCTCT TTGATAGCAGTGGGATGTTTCACCGGTGCAAACCAACCTCT < 41bp 0.483037903993467 0.700601477792419 0.7615634 0.8962472 prediction 0.401202955584837 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36763284 chr8:36763287 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_129545 0 0 0 1 36763272 36763292 mRNA hsa-miR-128 KCNU1 miRanda miRanda
9949 chr7 123516864 123516864 1 + C A LUAD 123516863 + 123516843 123516883 41 TGATTTAGGGAGCTACATAGCCAATGTGACCAGAGCTGCTG TGATTTAGGGAGCTACATAGCAAATGTGACCAGAGCTGCTG < 41bp 0.433370142893845 0.700570476488651 0.13070789 0.41169724 prediction 0.401140952977303 Functional Gain - HYAL4 ENSG00000106302 CDS Human protein_coding chr7:123516863 chr7:123516864 synonymous SNV . 0 22 hm5C_associated_SNPs_129560 0 0 0 2 123516851 123516872 mRNA hsa-miR-23a HYAL4 miRanda miRanda
9950 chr7 123516864 123516864 1 + C A LUAD 123516863 + 123516843 123516883 41 TGATTTAGGGAGCTACATAGCCAATGTGACCAGAGCTGCTG TGATTTAGGGAGCTACATAGCAAATGTGACCAGAGCTGCTG < 41bp 0.433370142893845 0.700570476488651 0.13070789 0.41169724 prediction 0.401140952977303 Functional Gain - HYAL4 ENSG00000106302 CDS Human protein_coding chr7:123516863 chr7:123516864 synonymous SNV . 0 22 hm5C_associated_SNPs_129560 0 0 0 2 123516852 123516872 mRNA hsa-miR-23b HYAL4 miRanda miRanda
9951 chr17 78410050 78410050 1 + A G rs7207961 78410047 + 78410027 78410067 41 CGAACGCGGTGGTGAGAGCACACATCCTCGTCTCGTTCCTG CGAACGCGGTGGTGAGAGCACACGTCCTCGTCTCGTTCCTG < 41bp 0.454935298325366 0.700531018507557 0.16722602 0.2647477 prediction 0.401062037015114 Functional Gain - ENDOV ENSG00000173818 UTR3 Human protein_coding chr17:78410047 chr17:78410050 . . 0 24 hm5C_associated_SNPs_129581 0 0 0 2 78410050 78410071 mRNA hsa-miR-383 FLJ35220 miRanda miRanda
9952 chr17 78410050 78410050 1 + A G rs7207961 78410047 + 78410027 78410067 41 CGAACGCGGTGGTGAGAGCACACATCCTCGTCTCGTTCCTG CGAACGCGGTGGTGAGAGCACACGTCCTCGTCTCGTTCCTG < 41bp 0.454935298325366 0.700531018507557 0.16722602 0.2647477 prediction 0.401062037015114 Functional Gain - ENDOV ENSG00000173818 UTR3 Human protein_coding chr17:78410047 chr17:78410050 . . 0 24 hm5C_associated_SNPs_129581 0 0 0 2 78410047 78410068 mRNA hsa-miR-873 FLJ35220 miRanda miRanda
9953 chr17 65688810 65688810 1 + C T COAD 65688809 + 65688789 65688829 41 CCCCTGCTGCCTTCTTCCGTCCGCAGTGCGCCTTCTAGTGC CCCCTGCTGCCTTCTTCCGTCTGCAGTGCGCCTTCTAGTGC < 41bp 0.629533501525752 0.830044981415725 0.11525962 0.05444166 prediction 0.401022959779946 Functional Gain - PITPNC1 ENSG00000154217 CDS Human protein_coding chr17:65688809 chr17:65688810 nonsynonymous SNV 0.391 2 22 hm5C_associated_SNPs_129597 0 0 1 1 65688789 65688811 mRNA hsa-miR-184 PITPNC1 miRanda miRanda
9954 chr8 10555329 10555329 1 + C A LUSC 10555328 + 10555308 10555348 41 ACCCCATCCCCTCCCGCTGGCCGAGGGCATGGACAGGGACT ACCCCATCCCCTCCCGCTGGCAGAGGGCATGGACAGGGACT < 41bp 0.421162838277218 0.700451946017166 0.6907487 0.8802085 prediction 0.400903892034332 Functional Gain - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10555328 chr8:10555329 synonymous SNV . 0 22 hm5C_associated_SNPs_129633 0 0 0 1 10555324 10555346 mRNA hsa-miR-339-5p C8orf74 miRanda miRanda
9955 chr16 67197847 67197847 1 + C T rs189620418 67197846 + 67197826 67197866 41 TGTTGCCCCCCGGGTCTTTACCGAGTTGGGAACTGTGATGG TGTTGCCCCCCGGGTCTTTACTGAGTTGGGAACTGTGATGG < 41bp 0.516989286065663 0.717278798469222 0.93526644 0.91554826 prediction 0.400579024807117 Functional Gain - FBXL8 ENSG00000135722 UTR3 Human protein_coding chr16:67197846 chr16:67197847 . . 0 22 hm5C_associated_SNPs_129724 0 0 1 2 67197844 67197864 mRNA hsa-miR-27a FBXL8 miRanda miRanda
9956 chr16 67197847 67197847 1 + C T rs189620418 67197846 + 67197826 67197866 41 TGTTGCCCCCCGGGTCTTTACCGAGTTGGGAACTGTGATGG TGTTGCCCCCCGGGTCTTTACTGAGTTGGGAACTGTGATGG < 41bp 0.516989286065663 0.717278798469222 0.93526644 0.91554826 prediction 0.400579024807117 Functional Gain - FBXL8 ENSG00000135722 UTR3 Human protein_coding chr16:67197846 chr16:67197847 . . 0 22 hm5C_associated_SNPs_129724 0 0 1 2 67197844 67197864 mRNA hsa-miR-27b FBXL8 miRanda miRanda
9957 chr1 77509973 77509973 1 + C A HNSC 77509972 + 77509952 77509992 41 CGGCAAGGCTCCCAGATTGACCAGACAGAGTGTGTCATCCG CGGCAAGGCTCCCAGATTGACAAGACAGAGTGTGTCATCCG < 41bp 0.647720122431661 0.84797919898386 0.02532199 0.04463038 prediction 0.400518153104398 Functional Gain - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77509972 chr1:77509973 nonsynonymous SNV 0.990 1 22 hm5C_associated_SNPs_129743 0 0 0 1 77509968 77509990 mRNA hsa-miR-425 ST6GALNAC5 miRanda miRanda
9958 chr5 148639107 148639107 1 + A G rs534581717 148639104 + 148639084 148639124 41 CTGCAAAGTTGGCCATGTTTCACAGGGAAACTTTTGGAAGA CTGCAAAGTTGGCCATGTTTCACGGGGAAACTTTTGGAAGA < 41bp 0.606916393970995 0.807148995487615 0.5018859 0.9132248 prediction 0.400465203033241 Functional Gain - ABLIM3 ENSG00000173210 splicing Human protein_coding chr5:148639104 chr5:148639107 . 0.000 0 24 hm5C_associated_SNPs_129762 0 0 0 3 148639085 148639107 mRNA hsa-miR-30a ABLIM3 miRanda miRanda
9959 chr5 148639107 148639107 1 + A G rs534581717 148639104 + 148639084 148639124 41 CTGCAAAGTTGGCCATGTTTCACAGGGAAACTTTTGGAAGA CTGCAAAGTTGGCCATGTTTCACGGGGAAACTTTTGGAAGA < 41bp 0.606916393970995 0.807148995487615 0.5018859 0.9132248 prediction 0.400465203033241 Functional Gain - ABLIM3 ENSG00000173210 splicing Human protein_coding chr5:148639104 chr5:148639107 . 0.000 0 24 hm5C_associated_SNPs_129762 0 0 0 3 148639085 148639107 mRNA hsa-miR-30d ABLIM3 miRanda miRanda
9960 chr5 148639107 148639107 1 + A G rs534581717 148639104 + 148639084 148639124 41 CTGCAAAGTTGGCCATGTTTCACAGGGAAACTTTTGGAAGA CTGCAAAGTTGGCCATGTTTCACGGGGAAACTTTTGGAAGA < 41bp 0.606916393970995 0.807148995487615 0.5018859 0.9132248 prediction 0.400465203033241 Functional Gain - ABLIM3 ENSG00000173210 splicing Human protein_coding chr5:148639104 chr5:148639107 . 0.000 0 24 hm5C_associated_SNPs_129762 0 0 0 3 148639085 148639107 mRNA hsa-miR-30e ABLIM3 miRanda miRanda
9961 chr11 73575504 73575504 1 + A G rs12262 73575501 + 73575481 73575521 41 AGTTAGAGTTCATCAGGAGACCCAACCCTTAGATTTCATAA AGTTAGAGTTCATCAGGAGACCCGACCCTTAGATTTCATAA < 41bp 0.586630591109522 0.786853915737244 0.021562517 0.02054888 prediction 0.400446649255444 Functional Gain - MRPL48 ENSG00000175581 UTR3 Human protein_coding chr11:73575501 chr11:73575504 . . 0 24 hm5C_associated_SNPs_129766 0 0 1 1 73575489 73575510 mRNA hsa-miR-296-3p MRPL48 miRanda miRanda
9962 chr19 40172671 40172671 1 + C T UCEC 40172670 + 40172650 40172690 41 GCTGCAGGTGGATTTCCATACCGAGATGAAGGAAGACTCAG GCTGCAGGTGGATTTCCATACTGAGATGAAGGAAGACTCAG < 41bp 0.514655045668144 0.714855420947119 0.18286893 0.18287349 prediction 0.400400750557951 Functional Gain - LGALS17A ENSG00000226025 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:40172670 chr19:40172671 . . 0 22 hm5C_associated_SNPs_129778 0 0 0 1 40172658 40172682 mRNA hsa-miR-205 LOC400696 miRanda miRanda
9963 chr16 71424151 71424151 1 + A G rs549076710 71424148 + 71424128 71424168 41 CCCCCATGCCACCACCCACCCCAAACTTCCAGGTTCCATCC CCCCCATGCCACCACCCACCCCAGACTTCCAGGTTCCATCC < 41bp 0.601407377269675 0.801544177709804 0.021878928 0.10700387 prediction 0.400273600880259 Functional Gain - CALB2 ENSG00000172137 UTR3 Human protein_coding chr16:71424148 chr16:71424151 . . 0 24 hm5C_associated_SNPs_129805 0 0 0 1 71424142 71424163 mRNA hsa-miR-490-3p CALB2 miRanda miRanda
9964 chr13 45594491 45594491 1 + C T SKCM 45594490 + 45594470 45594510 41 ACAAGAAGCAAGGAAGTCATCCAGTAAGAAAGATGAAGAAC ACAAGAAGCAAGGAAGTCATCTAGTAAGAAAGATGAAGAAC < 41bp 0.458409525525884 0.700024883258502 0.07232949 0.1291658 prediction 0.400049766517004 Functional Gain - GPALPP1 ENSG00000133114 CDS Human protein_coding chr13:45594490 chr13:45594491 synonymous SNV . 0 22 hm5C_associated_SNPs_129867 0 0 1 1 45594484 45594509 mRNA hsa-miR-205 KIAA1704 miRanda miRanda
9965 chr16 69376287 69376287 1 + T C rs148249150 69376287 + 69376267 69376307 41 GCGGACGGATCACTTGAGGTTAGGAGTTTGAGACCAGCCTG GCGGACGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTG Direct Gain 0 0.984748600832119 0 0.875625491142273 prediction 0.969497201664239 Functional Gain - NIP7 ENSG00000132603 UTR3 Human protein_coding chr16:69376287 chr16:69376287 . . 0 21 hm5C_associated_SNPs_129898 0 0 0 1 69376280 69376299 mRNA hsa-miR-371-5p NIP7 miRanda miRanda
9966 chr17 56167100 56167100 1 + T C rs562221344 56167100 + 56167080 56167120 41 AGGCTGCAGGGGGACAGTGTTGGGATTGTCAAGGAAAAAGG AGGCTGCAGGGGGACAGTGTCGGGATTGTCAAGGAAAAAGG Direct Gain 0 0.976133642886087 0 0.907693982124329 prediction 0.952267285772174 Functional Gain - DYNLL2 ENSG00000264364 UTR3 Human protein_coding chr17:56167100 chr17:56167100 . . 0 21 hm5C_associated_SNPs_130017 0 0 1 2 56167080 56167101 mRNA hsa-miR-141 DYNLL2 miRanda miRanda
9967 chr17 56167100 56167100 1 + T C rs562221344 56167100 + 56167080 56167120 41 AGGCTGCAGGGGGACAGTGTTGGGATTGTCAAGGAAAAAGG AGGCTGCAGGGGGACAGTGTCGGGATTGTCAAGGAAAAAGG Direct Gain 0 0.976133642886087 0 0.907693982124329 prediction 0.952267285772174 Functional Gain - DYNLL2 ENSG00000264364 UTR3 Human protein_coding chr17:56167100 chr17:56167100 . . 0 21 hm5C_associated_SNPs_130017 0 0 1 2 56167080 56167101 mRNA hsa-miR-200a DYNLL2 miRanda miRanda
9968 chr1 236341802 236341802 1 + T C BRCA 236341802 + 236341782 236341822 41 TGCTGGTAAAGACGGGAAATTGGGAGAGGAAGGTTATCGTC TGCTGGTAAAGACGGGAAATCGGGAGAGGAAGGTTATCGTC Direct Gain 0 0.975575655599094 0 0.868076324462891 prediction 0.951151311198188 Functional Gain - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236341802 chr1:236341802 nonsynonymous SNV 0.115 0 21 hm5C_associated_SNPs_130026 0 0 1 1 236341782 236341808 mRNA hsa-miR-150 GPR137B miRanda miRanda
9969 chr12 32897437 32897437 1 + T C rs1971910 32897437 + 32897417 32897457 41 GCAGGTGGATCACCTGAGGTTGGGAGTTGGAGACCAGCTTG GCAGGTGGATCACCTGAGGTCGGGAGTTGGAGACCAGCTTG Direct Gain 0 0.975549858251861 0 0.896290183067322 prediction 0.951099716503723 Functional Gain - DNM1L ENSG00000087470 UTR3 Human protein_coding chr12:32897437 chr12:32897437 . . 0 21 hm5C_associated_SNPs_130028 3 0 0 1 32897435 32897463 mRNA hsa-miR-182 DNM1L miRanda miRanda
9970 chr11 18231434 18231434 1 + G C rs7128174 18231434 + 18231414 18231454 41 AGCTGTATGGCATCAAAACGGGGGATGCAATACTTCAGTTG AGCTGTATGGCATCAAAACGCGGGATGCAATACTTCAGTTG Direct Gain 0 0.973876733404141 0 0.815649151802063 prediction 0.947753466808281 Functional Gain - LOC494141 ENSG00000189332 CDS Human transcribed_unprocessed_pseudogene chr11:18231434 chr11:18231434 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_130094 0 0 0 1 18231423 18231442 mRNA hsa-miR-324-5p LOC494141 miRanda miRanda
9971 chr12 77158068 77158068 1 + T C UCEC 77158068 + 77158048 77158088 41 TGGCGGACGGCCCGGATGAGTACGATACCGAAGCGGGCTGT TGGCGGACGGCCCGGATGAGCACGATACCGAAGCGGGCTGT Direct Gain 0 0.972826566877397 0 0.498633146286011 prediction 0.945653133754794 Functional Gain - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77158068 chr12:77158068 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130121 0 0 1 1 77158048 77158074 mRNA hsa-miR-487b ZDHHC17 miRanda miRanda
9972 chr18 12725500 12725500 1 + T C BLCA 12725500 + 12725480 12725520 41 AGTTCTTGGAGATTACTCTTTGGCAGTGGTCTTCCCCCTGC AGTTCTTGGAGATTACTCTTCGGCAGTGGTCTTCCCCCTGC Direct Gain 0 0.967811213373706 0 0.672155022621155 prediction 0.935622426747413 Functional Gain - PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12725500 chr18:12725500 synonymous SNV . 0 21 hm5C_associated_SNPs_130283 0 0 1 1 12725493 12725515 mRNA hsa-miR-7 PSMG2 miRanda miRanda
9973 chr1 178517311 178517311 1 + A C rs144670566 178517311 + 178517291 178517331 41 TGGGCTATAGACTGGGCACCAGGGACTATCACCTCGTGCCA TGGGCTATAGACTGGGCACCCGGGACTATCACCTCGTGCCA Direct Gain 0 0.967403122420336 0 0.889864921569824 prediction 0.934806244840671 Functional Gain - C1orf220 ENSG00000184909;ENSG00000213057 UTR3 Human other chr1:178517311 chr1:178517311 . . 0 21 hm5C_associated_SNPs_130301 0 0 0 1 178517306 178517326 mRNA hsa-miR-202 C1orf220 miRanda miRanda
9974 chrX 47273023 47273023 1 + T C rs376401678 47273023 + 47273003 47273043 41 TCACCATTGGATCAAGCTCCTTGGGGGCATATGATCACCAG TCACCATTGGATCAAGCTCCCTGGGGGCATATGATCACCAG Direct Gain 0 0.966751737436492 0 0.839223980903625 prediction 0.933503474872984 Functional Gain - ZNF157 ENSG00000147117 UTR3 Human protein_coding chrX:47273023 chrX:47273023 . . 0 21 hm5C_associated_SNPs_130322 0 0 0 2 47273005 47273024 mRNA hsa-miR-28-5p ZNF157 miRanda miRanda
9975 chrX 47273023 47273023 1 + T C rs376401678 47273023 + 47273003 47273043 41 TCACCATTGGATCAAGCTCCTTGGGGGCATATGATCACCAG TCACCATTGGATCAAGCTCCCTGGGGGCATATGATCACCAG Direct Gain 0 0.966751737436492 0 0.839223980903625 prediction 0.933503474872984 Functional Gain - ZNF157 ENSG00000147117 UTR3 Human protein_coding chrX:47273023 chrX:47273023 . . 0 21 hm5C_associated_SNPs_130322 0 0 0 2 47273005 47273024 mRNA hsa-miR-708 ZNF157 miRanda miRanda
9976 chr18 21739766 21739766 1 + T C COAD 21739766 + 21739746 21739786 41 GTCAGATGTCTTGAGATATGTTGCAATGCAAGTGCCCATTG GTCAGATGTCTTGAGATATGCTGCAATGCAAGTGCCCATTG Direct Gain 0 0.966355381206513 0 0.30334261059761 prediction 0.932710762413026 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739766 chr18:21739766 nonsynonymous SNV 0.931 0 21 hm5C_associated_SNPs_130341 0 0 1 5 21739751 21739773 mRNA hsa-miR-25 CABYR miRanda miRanda
9977 chr18 21739766 21739766 1 + T C COAD 21739766 + 21739746 21739786 41 GTCAGATGTCTTGAGATATGTTGCAATGCAAGTGCCCATTG GTCAGATGTCTTGAGATATGCTGCAATGCAAGTGCCCATTG Direct Gain 0 0.966355381206513 0 0.30334261059761 prediction 0.932710762413026 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739766 chr18:21739766 nonsynonymous SNV 0.931 0 21 hm5C_associated_SNPs_130341 0 0 1 5 21739750 21739773 mRNA hsa-miR-32 CABYR miRanda miRanda
9978 chr18 21739766 21739766 1 + T C COAD 21739766 + 21739746 21739786 41 GTCAGATGTCTTGAGATATGTTGCAATGCAAGTGCCCATTG GTCAGATGTCTTGAGATATGCTGCAATGCAAGTGCCCATTG Direct Gain 0 0.966355381206513 0 0.30334261059761 prediction 0.932710762413026 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739766 chr18:21739766 nonsynonymous SNV 0.931 0 21 hm5C_associated_SNPs_130341 0 0 1 5 21739756 21739776 mRNA hsa-miR-33a CABYR miRanda miRanda
9979 chr18 21739766 21739766 1 + T C COAD 21739766 + 21739746 21739786 41 GTCAGATGTCTTGAGATATGTTGCAATGCAAGTGCCCATTG GTCAGATGTCTTGAGATATGCTGCAATGCAAGTGCCCATTG Direct Gain 0 0.966355381206513 0 0.30334261059761 prediction 0.932710762413026 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739766 chr18:21739766 nonsynonymous SNV 0.931 0 21 hm5C_associated_SNPs_130341 0 0 1 5 21739751 21739773 mRNA hsa-miR-92a CABYR miRanda miRanda
9980 chr18 21739766 21739766 1 + T C COAD 21739766 + 21739746 21739786 41 GTCAGATGTCTTGAGATATGTTGCAATGCAAGTGCCCATTG GTCAGATGTCTTGAGATATGCTGCAATGCAAGTGCCCATTG Direct Gain 0 0.966355381206513 0 0.30334261059761 prediction 0.932710762413026 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739766 chr18:21739766 nonsynonymous SNV 0.931 0 21 hm5C_associated_SNPs_130341 0 0 1 5 21739757 21739776 mRNA hsa-miR-33b CABYR miRanda miRanda
9981 chr7 98951628 98951628 1 + T C HNSC 98951628 + 98951608 98951648 41 CAGCTGATGTCAGAGTTTGGTGGCAGTGGCACTGGTGGCTG CAGCTGATGTCAGAGTTTGGCGGCAGTGGCACTGGTGGCTG Direct Gain 0 0.965766859239683 0 0.928581237792969 prediction 0.931533718479365 Functional Gain - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98951628 chr7:98951628 synonymous SNV . 0 21 hm5C_associated_SNPs_130362 0 0 1 1 98951617 98951642 mRNA hsa-miR-148a ARPC1A miRanda miRanda
9982 chr11 43702530 43702530 1 + A C rs56168061 43702530 + 43702510 43702550 41 GTCGGCCCGGGGCTCGGAGAATGGGCAGGTGAGTCGGATGC GTCGGCCCGGGGCTCGGAGACTGGGCAGGTGAGTCGGATGC Direct Gain 0 0.965628950038006 0 0.516914486885071 prediction 0.931257900076012 Functional Gain - HSD17B12 ENSG00000149084 CDS Human protein_coding chr11:43702530 chr11:43702530 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_130365 0 0 1 1 43702528 43702537 mRNA hsa-miR-486-5p HSD17B12 miRanda miRanda
9983 chr19 51363500 51363500 1 + T C rs116064912 51363500 + 51363480 51363520 41 GGTGTGAGGTCCAGGGTTGCTAGGAAAAGAAATCAGCAGAC GGTGTGAGGTCCAGGGTTGCCAGGAAAAGAAATCAGCAGAC Direct Gain 0 0.965509480512423 0 0.924447774887085 prediction 0.931018961024847 Functional Gain - KLK3 ENSG00000142515 UTR3 Human protein_coding chr19:51363500 chr19:51363500 . . 0 21 hm5C_associated_SNPs_130370 0 0 0 1 51363487 51363506 mRNA hsa-miR-384 KLK3 miRanda miRanda
9984 chr3 171576953 171576953 1 + T C rs187500490 171576953 + 171576933 171576973 41 CCTTTCAGTGGGTGGGAGGCTGGGGGAGGGATAGCATTAGG CCTTTCAGTGGGTGGGAGGCCGGGGGAGGGATAGCATTAGG Direct Gain 0 0.96469889489876 0 0.847764253616333 prediction 0.929397789797519 Functional Gain - TMEM212 ENSG00000186329 UTR3 Human protein_coding chr3:171576953 chr3:171576953 . . 0 21 hm5C_associated_SNPs_130408 0 0 0 1 171576950 171576972 mRNA hsa-miR-155 TMEM212 miRanda miRanda
9985 chr6 88362934 88362934 1 + G C BLCA 88362934 + 88362914 88362954 41 GCAGCACAGCTAAGAGAATAGAGGAGTTCCTGGCCCAGTTT GCAGCACAGCTAAGAGAATACAGGAGTTCCTGGCCCAGTTT Direct Gain 0 0.963129956045428 0 0.684310913085938 prediction 0.926259912090856 Functional Gain - ORC3 ENSG00000135336 CDS Human protein_coding chr6:88362934 chr6:88362934 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130486 0 0 1 1 88362925 88362946 mRNA hsa-miR-873 ORC3L miRanda miRanda
9986 chr10 100004536 100004536 1 + G C rs112832441 100004536 + 100004516 100004556 41 TCCAGCTGCACTGCAGCCAGGGGGGATACCAGCTTCATTCC TCCAGCTGCACTGCAGCCAGCGGGGATACCAGCTTCATTCC Direct Gain 0 0.960693833547297 0 0.916919469833374 prediction 0.921387667094594 Functional Gain - R3HCC1L ENSG00000166024 UTR3 Human protein_coding chr10:100004536 chr10:100004536 . . 0 21 hm5C_associated_SNPs_130614 0 0 1 1 100004516 100004537 mRNA hsa-miR-370 C10orf28 miRanda miRanda
9987 chr15 56689383 56689383 1 + T C rs150466462 56689383 + 56689363 56689403 41 GATGGAGATGAGGAACTTGTTAGGAACTAGAGCAAATGTGA GATGGAGATGAGGAACTTGTCAGGAACTAGAGCAAATGTGA Direct Gain 0 0.960075253477982 0 0.831416964530945 prediction 0.920150506955964 Functional Gain - TEX9 ENSG00000151575 UTR3 Human protein_coding chr15:56689383 chr15:56689383 . . 0 21 hm5C_associated_SNPs_130648 0 0 1 2 56689383 56689404 mRNA hsa-miR-23a TEX9 miRanda miRanda
9988 chr15 56689383 56689383 1 + T C rs150466462 56689383 + 56689363 56689403 41 GATGGAGATGAGGAACTTGTTAGGAACTAGAGCAAATGTGA GATGGAGATGAGGAACTTGTCAGGAACTAGAGCAAATGTGA Direct Gain 0 0.960075253477982 0 0.831416964530945 prediction 0.920150506955964 Functional Gain - TEX9 ENSG00000151575 UTR3 Human protein_coding chr15:56689383 chr15:56689383 . . 0 21 hm5C_associated_SNPs_130648 0 0 1 2 56689383 56689404 mRNA hsa-miR-23b TEX9 miRanda miRanda
9989 chr19 52729309 52729309 1 + T C rs369880957 52729309 + 52729289 52729329 41 GTCCCTCTTTGGGGAGACACTGGGGGGCCTTTGGCTGTCAC GTCCCTCTTTGGGGAGACACCGGGGGGCCTTTGGCTGTCAC Direct Gain 0 0.960041729956501 0 0.972474455833435 prediction 0.920083459913001 Functional Gain - PPP2R1A ENSG00000268015 ncRNA_intronic Human antisense chr19:52729309 chr19:52729309 . . 0 21 hm5C_associated_SNPs_130652 0 0 1 1 52729309 52729330 mRNA hsa-miR-542-3p PPP2R1A miRanda miRanda
9990 chr3 138348836 138348836 1 + T C rs141904805 138348836 + 138348816 138348856 41 GGAAACAGAAAGTGTGGGACTAGGAGCCGAAATCACTGGGT GGAAACAGAAAGTGTGGGACCAGGAGCCGAAATCACTGGGT Direct Gain 0 0.958469262735289 0 0.89223837852478 prediction 0.916938525470578 Functional Gain - FAIM ENSG00000158234 intronic Human protein_coding chr3:138348836 chr3:138348836 . . 0 21 hm5C_associated_SNPs_130739 0 0 0 2 138348833 138348855 mRNA hsa-miR-199a-5p FAIM miRanda miRanda
9991 chr3 138348836 138348836 1 + T C rs141904805 138348836 + 138348816 138348856 41 GGAAACAGAAAGTGTGGGACTAGGAGCCGAAATCACTGGGT GGAAACAGAAAGTGTGGGACCAGGAGCCGAAATCACTGGGT Direct Gain 0 0.958469262735289 0 0.89223837852478 prediction 0.916938525470578 Functional Gain - FAIM ENSG00000158234 intronic Human protein_coding chr3:138348836 chr3:138348836 . . 0 21 hm5C_associated_SNPs_130739 0 0 0 2 138348833 138348855 mRNA hsa-miR-199b-5p FAIM miRanda miRanda
9992 chr10 13629129 13629129 1 + G C UCEC 13629129 + 13629109 13629149 41 TCCTTCGGAAGCGGCAGCTGGTGGAGGACAGGAACCTGCTG TCCTTCGGAAGCGGCAGCTGCTGGAGGACAGGAACCTGCTG Direct Gain 0 0.95631381002392 0 0.825000643730164 prediction 0.912627620047839 Functional Gain - PRPF18 ENSG00000165630 CDS Human protein_coding chr10:13629129 chr10:13629129 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130871 0 0 1 1 13629129 13629149 mRNA hsa-miR-214 PRPF18 miRanda miRanda
9993 chr3 195391115 195391115 1 + T C rs28401477 195391115 + 195391095 195391135 41 TCAATATTGCACACCTTATATGGGAGGGTAAGGCTGCCCCC TCAATATTGCACACCTTATACGGGAGGGTAAGGCTGCCCCC Direct Gain 0 0.956069147713798 0 0.921756267547607 prediction 0.912138295427595 Functional Gain - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195391115 chr3:195391115 . . 0 21 hm5C_associated_SNPs_130892 0 0 1 1 195391102 195391121 lncRNA hsa-miR-2116-3p MUC20-OT1 miRanda starBase2
9994 chr15 90170920 90170920 1 + A C rs76530445 90170920 + 90170900 90170940 41 TCTGGAGCAGCCACATTTTCAAGGACTGTCCAAGAGCCAGC TCTGGAGCAGCCACATTTTCCAGGACTGTCCAAGAGCCAGC Direct Gain 0 0.955302831773875 0 0.790501117706299 prediction 0.91060566354775 Functional Gain - TICRR ENSG00000140534 UTR3 Human protein_coding chr15:90170920 chr15:90170920 . . 0 21 hm5C_associated_SNPs_130944 0 0 1 1 90170918 90170940 mRNA hsa-miR-149 C15orf42 miRanda miRanda
9995 chr21 43867218 43867218 1 + T C BLCA 43867218 + 43867198 43867238 41 AAAATAAAGAGGAAGGAAAATGGGAGTTGGTGAACCCACCG AAAATAAAGAGGAAGGAAAACGGGAGTTGGTGAACCCACCG Direct Gain 0 0.954899971349417 0 0.791056632995605 prediction 0.909799942698835 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43867218 chr21:43867218 nonsynonymous SNV 0.963 4 21 hm5C_associated_SNPs_130972 0 0 0 1 43867201 43867223 mRNA hsa-miR-204 UBASH3A miRanda miRanda
9996 chr5 7889311 7889311 1 + T C COAD 7889311 + 7889291 7889331 41 AGCCGATTATAGCCGCTTTGTACGAGATGCCTGTGCCTGCT AGCCGATTATAGCCGCTTTGCACGAGATGCCTGTGCCTGCT Direct Gain 0 0.954805384588971 0 0.667982280254364 prediction 0.909610769177942 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7889311 chr5:7889311 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_130984 0 0 1 1 7889311 7889332 mRNA hsa-miR-195 MTRR miRanda miRanda
9997 chr14 57075932 57075932 1 + T C CESC 57075932 + 57075912 57075952 41 TTAATCACGCCCGGTGGACCTGGGGAGACCAGACAACACTG TTAATCACGCCCGGTGGACCCGGGGAGACCAGACAACACTG Direct Gain 0 0.952870409818492 0 0.91214919090271 prediction 0.905740819636983 Functional Gain - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57075932 chr14:57075932 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131098 0 0 0 1 57075921 57075944 mRNA hsa-miR-149 C14orf101 miRanda miRanda
9998 chr14 21167872 21167872 1 + T C UCEC 21167872 + 21167852 21167892 41 GATTGCAGGGACACAGGAAGTTCCAGGGCACCCAACTGCAG GATTGCAGGGACACAGGAAGCTCCAGGGCACCCAACTGCAG Direct Gain 0 0.952553508685254 0 0.798499941825867 prediction 0.905107017370508 Functional Gain - RNASE4 ENSG00000258818 CDS Human protein_coding chr14:21167872 chr14:21167872 synonymous SNV . 0 21 hm5C_associated_SNPs_131123 0 0 1 1 21167861 21167882 mRNA hsa-miR-874 RNASE4 miRanda miRanda
9999 chr17 7287876 7287876 1 + T C CESC 7287876 + 7287856 7287896 41 GGATGTTTGGGGTGACGCTGTGGGAGATGTTCTCCGGGGGC GGATGTTTGGGGTGACGCTGCGGGAGATGTTCTCCGGGGGC Direct Gain 0 0.951784148221323 0 0.935893833637238 prediction 0.903568296442646 Functional Gain - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7287876 chr17:7287876 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_131172 0 0 0 1 7287860 7287882 mRNA hsa-miR-150 TNK1 miRanda miRanda
10000 chr5 180377133 180377133 1 + G C BLCA 180377133 + 180377113 180377153 41 TGCCGGGATGATGTGGACAGGAGGAAGGAGTACGTGACTTT TGCCGGGATGATGTGGACAGCAGGAAGGAGTACGTGACTTT Direct Gain 0 0.950800609866412 0 0.457002758979797 prediction 0.901601219732824 Functional Gain - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180377133 chr5:180377133 nonsynonymous SNV 0.010 2 21 hm5C_associated_SNPs_131247 0 0 0 1 180377132 180377153 mRNA hsa-miR-224 BTNL8 miRanda miRanda
10001 chrX 30261826 30261826 1 + T C rs73205834 30261826 + 30261806 30261846 41 TAAGAGAAGACTTTAAGAGATGAGGGAGAGAGAGCCAGAGA TAAGAGAAGACTTTAAGAGACGAGGGAGAGAGAGCCAGAGA Direct Gain 0 0.949274155133363 0 0.470073968172073 prediction 0.898548310266726 Functional Gain - MAGEB4 ENSG00000120289 UTR3 Human protein_coding chrX:30261826 chrX:30261826 . . 0 21 hm5C_associated_SNPs_131367 0 0 0 1 30261820 30261844 mRNA hsa-miR-149 MAGEB4 miRanda miRanda
10002 chr1 28087289 28087289 1 + T C rs531655660 28087289 + 28087269 28087309 41 AGACTGCATGCTTGAGTGTTTGGGATTTCAAGCTCGCTCTC AGACTGCATGCTTGAGTGTTCGGGATTTCAAGCTCGCTCTC Direct Gain 0 0.948052517901952 0 0.846511721611023 prediction 0.896105035803904 Functional Gain - FAM76A ENSG00000009780 UTR3 Human protein_coding chr1:28087289 chr1:28087289 . . 0 21 hm5C_associated_SNPs_131458 0 0 1 1 28087284 28087307 mRNA hsa-miR-708 FAM76A miRanda miRanda
10003 chr1 36553836 36553836 1 + A C rs12131875 36553836 + 36553816 36553856 41 GTTGGGTGGGCAATGGAAGGAGGGAGGAGAGAAATGAATGG GTTGGGTGGGCAATGGAAGGCGGGAGGAGAGAAATGAATGG Direct Gain 0 0.947530570792873 0 0.836372852325439 prediction 0.895061141585747 Functional Gain - TEKT2 ENSG00000092850 UTR3 Human protein_coding chr1:36553836 chr1:36553836 . . 0 21 hm5C_associated_SNPs_131498 0 0 0 5 36553835 36553857 mRNA hsa-miR-181a TEKT2 miRanda miRanda
10004 chr1 36553836 36553836 1 + A C rs12131875 36553836 + 36553816 36553856 41 GTTGGGTGGGCAATGGAAGGAGGGAGGAGAGAAATGAATGG GTTGGGTGGGCAATGGAAGGCGGGAGGAGAGAAATGAATGG Direct Gain 0 0.947530570792873 0 0.836372852325439 prediction 0.895061141585747 Functional Gain - TEKT2 ENSG00000092850 UTR3 Human protein_coding chr1:36553836 chr1:36553836 . . 0 21 hm5C_associated_SNPs_131498 0 0 0 5 36553835 36553857 mRNA hsa-miR-181b TEKT2 miRanda miRanda
10005 chr1 36553836 36553836 1 + A C rs12131875 36553836 + 36553816 36553856 41 GTTGGGTGGGCAATGGAAGGAGGGAGGAGAGAAATGAATGG GTTGGGTGGGCAATGGAAGGCGGGAGGAGAGAAATGAATGG Direct Gain 0 0.947530570792873 0 0.836372852325439 prediction 0.895061141585747 Functional Gain - TEKT2 ENSG00000092850 UTR3 Human protein_coding chr1:36553836 chr1:36553836 . . 0 21 hm5C_associated_SNPs_131498 0 0 0 5 36553835 36553857 mRNA hsa-miR-181c TEKT2 miRanda miRanda
10006 chr1 36553836 36553836 1 + A C rs12131875 36553836 + 36553816 36553856 41 GTTGGGTGGGCAATGGAAGGAGGGAGGAGAGAAATGAATGG GTTGGGTGGGCAATGGAAGGCGGGAGGAGAGAAATGAATGG Direct Gain 0 0.947530570792873 0 0.836372852325439 prediction 0.895061141585747 Functional Gain - TEKT2 ENSG00000092850 UTR3 Human protein_coding chr1:36553836 chr1:36553836 . . 0 21 hm5C_associated_SNPs_131498 0 0 0 5 36553812 36553836 mRNA hsa-miR-205 TEKT2 miRanda miRanda
10007 chr1 36553836 36553836 1 + A C rs12131875 36553836 + 36553816 36553856 41 GTTGGGTGGGCAATGGAAGGAGGGAGGAGAGAAATGAATGG GTTGGGTGGGCAATGGAAGGCGGGAGGAGAGAAATGAATGG Direct Gain 0 0.947530570792873 0 0.836372852325439 prediction 0.895061141585747 Functional Gain - TEKT2 ENSG00000092850 UTR3 Human protein_coding chr1:36553836 chr1:36553836 . . 0 21 hm5C_associated_SNPs_131498 0 0 0 5 36553835 36553857 mRNA hsa-miR-181d TEKT2 miRanda miRanda
10008 chr8 75615877 75615877 1 + T C rs77156590 75615877 + 75615857 75615897 41 TACTGGGAAAACAGGAAAATTAGGAGGAATGTTCTGGAGTG TACTGGGAAAACAGGAAAATCAGGAGGAATGTTCTGGAGTG Direct Gain 0 0.94715877532657 0 0.844851493835449 prediction 0.894317550653141 Functional Gain - MIR2052HG ENSG00000254349 CDS Human lincRNA chr8:75615877 chr8:75615877 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_131541 0 0 0 1 75615869 75615890 mRNA hsa-miR-543 FLJ39080 miRanda miRanda
10009 chr2 182786990 182786990 1 + G C BLCA 182786990 + 182786970 182787010 41 CTCCAGATTTGGAAAGTTCTGAGGAAGTTGATGCAGCTGAA CTCCAGATTTGGAAAGTTCTCAGGAAGTTGATGCAGCTGAA Direct Gain 0 0.946344001204852 0 0.909540891647339 prediction 0.892688002409705 Functional Gain - SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182786990 chr2:182786990 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_131611 0 0 1 2 182786980 182787009 mRNA hsa-miR-148b SSFA2 miRanda miRanda
10010 chr2 182786990 182786990 1 + G C BLCA 182786990 + 182786970 182787010 41 CTCCAGATTTGGAAAGTTCTGAGGAAGTTGATGCAGCTGAA CTCCAGATTTGGAAAGTTCTCAGGAAGTTGATGCAGCTGAA Direct Gain 0 0.946344001204852 0 0.909540891647339 prediction 0.892688002409705 Functional Gain - SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182786990 chr2:182786990 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_131611 0 0 1 2 182786977 182786996 mRNA hsa-miR-384 SSFA2 miRanda miRanda
10011 chr10 1061734 1061734 1 + T C HNSC 1061734 + 1061714 1061754 41 AGAAGATCCCGGAGCATCACTAGGAAAAGAAAGCGGGAAGA AGAAGATCCCGGAGCATCACCAGGAAAAGAAAGCGGGAAGA Direct Gain 0 0.946109509321359 0 0.899217903614044 prediction 0.892219018642719 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1061734 chr10:1061734 synonymous SNV . 0 21 hm5C_associated_SNPs_131627 0 0 1 1 1061722 1061740 mRNA hsa-miR-384 GTPBP4 miRanda miRanda
10012 chr6 137187785 137187785 1 + T C UCEC 137187785 + 137187765 137187805 41 GTGATCAGACTCTGAGAATATGGGATGTGAAGGCAGCAGGA GTGATCAGACTCTGAGAATACGGGATGTGAAGGCAGCAGGA Direct Gain 0 0.94453994543238 0 0.787153363227844 prediction 0.88907989086476 Functional Gain - PEX7 ENSG00000112357 CDS Human protein_coding chr6:137187785 chr6:137187785 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_131786 0 0 1 1 137187784 137187805 mRNA hsa-miR-370 PEX7 miRanda miRanda
10013 chr17 4624378 4624378 1 + G C rs35270783 4624378 + 4624358 4624398 41 GGGATGGGGTTGGGAGAGGTGAGGGCAGGATTAAGATCCCC GGGATGGGGTTGGGAGAGGTCAGGGCAGGATTAAGATCCCC Direct Gain 0 0.944133091930336 0 0.798259973526001 prediction 0.888266183860672 Functional Gain - ARRB2 ENSG00000141480 UTR3 Human protein_coding chr17:4624378 chr17:4624378 . . 0 21 hm5C_associated_SNPs_131822 0 0 1 1 4624375 4624401 mRNA hsa-miR-491-5p ARRB2 miRanda miRanda
10014 chr12 111319093 111319093 1 + G C LUAD 111319093 + 111319073 111319113 41 TTCGAGGAGCAGGCCAAAAGGGAGGAAGGTACACCCTCCAG TTCGAGGAGCAGGCCAAAAGCGAGGAAGGTACACCCTCCAG Direct Gain 0 0.944048107760503 0 0.86844539642334 prediction 0.888096215521007 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111319093 chr12:111319093 nonsynonymous SNV 0.605 0 21 hm5C_associated_SNPs_131829 0 0 0 2 111319074 111319096 mRNA hsa-miR-204 CCDC63 miRanda miRanda
10015 chr12 111319093 111319093 1 + G C LUAD 111319093 + 111319073 111319113 41 TTCGAGGAGCAGGCCAAAAGGGAGGAAGGTACACCCTCCAG TTCGAGGAGCAGGCCAAAAGCGAGGAAGGTACACCCTCCAG Direct Gain 0 0.944048107760503 0 0.86844539642334 prediction 0.888096215521007 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111319093 chr12:111319093 nonsynonymous SNV 0.605 0 21 hm5C_associated_SNPs_131829 0 0 0 2 111319074 111319096 mRNA hsa-miR-211 CCDC63 miRanda miRanda
10016 chr5 104435355 104435355 1 + T C UCEC 104435355 + 104435335 104435375 41 ATTTTGGTACCAAGTAGAATTGGGACACAGCAGGTCAGGAG ATTTTGGTACCAAGTAGAATCGGGACACAGCAGGTCAGGAG Direct Gain 0 0.943933308149017 0 0.811663866043091 prediction 0.887866616298034 Functional Gain - RAB9BP1 ENSG00000232159 ncRNA_exonic Human processed_pseudogene chr5:104435355 chr5:104435355 . . 0 21 hm5C_associated_SNPs_131837 0 0 0 1 104435348 104435369 mRNA hsa-miR-370 RAB9BP1 miRanda miRanda
10017 chr15 43677998 43677998 1 + G C BLCA 43677998 + 43677978 43678018 41 TCCTTGACTAGCGCCTGATTGAGGAAGAGAACATGCTGGCA TCCTTGACTAGCGCCTGATTCAGGAAGAGAACATGCTGGCA Direct Gain 0 0.943640543836724 0 0.924526572227478 prediction 0.887281087673449 Functional Gain - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43677998 chr15:43677998 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_131861 0 0 1 1 43677998 43678017 mRNA hsa-miR-338-3p TUBGCP4 miRanda miRanda
10018 chr18 9887800 9887800 1 + A C UCEC 9887800 + 9887780 9887820 41 TAAAGCCTGAAGAAGAAACAATGGAGTTCCCGGAGGGGGAC TAAAGCCTGAAGAAGAAACACTGGAGTTCCCGGAGGGGGAC Direct Gain 0 0.943599451950749 0 0.4879370033741 prediction 0.887198903901498 Functional Gain - TXNDC2 ENSG00000168454 CDS Human protein_coding chr18:9887800 chr18:9887800 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_131867 0 0 0 1 9887783 9887806 mRNA hsa-miR-136 TXNDC2 miRanda miRanda
10019 chr1 70877186 70877186 1 + G C rs529824425 70877186 + 70877166 70877206 41 TCCATGTGGGCCAGGATCCAGAGCAATGGACCTCCAGGGCT TCCATGTGGGCCAGGATCCACAGCAATGGACCTCCAGGGCT Direct Gain 0 0.943413359097377 0 0.553562641143799 prediction 0.886826718194754 Functional Gain - CTH ENSG00000116761 CDS Human protein_coding chr1:70877186 chr1:70877186 nonsynonymous SNV 0.174 2 21 hm5C_associated_SNPs_131883 0 0 1 1 70877181 70877205 mRNA hsa-miR-125a-5p CTH miRanda miRanda
10020 chr3 51897303 51897303 1 + T C KIRP 51897303 + 51897283 51897323 41 GCCACTGGCAATGCCACAACTGCCAGACCTGCGCTCTCCTC GCCACTGGCAATGCCACAACCGCCAGACCTGCGCTCTCCTC Direct Gain 0 0.943137958738201 0 0.90535843372345 prediction 0.886275917476403 Functional Gain - IQCF2 ENSG00000184345 CDS Human protein_coding chr3:51897303 chr3:51897303 nonsynonymous SNV 0.989 3 21 hm5C_associated_SNPs_131903 0 0 0 2 51897283 51897307 mRNA hsa-miR-449a IQCF2 miRanda miRanda
10021 chr3 51897303 51897303 1 + T C KIRP 51897303 + 51897283 51897323 41 GCCACTGGCAATGCCACAACTGCCAGACCTGCGCTCTCCTC GCCACTGGCAATGCCACAACCGCCAGACCTGCGCTCTCCTC Direct Gain 0 0.943137958738201 0 0.90535843372345 prediction 0.886275917476403 Functional Gain - IQCF2 ENSG00000184345 CDS Human protein_coding chr3:51897303 chr3:51897303 nonsynonymous SNV 0.989 3 21 hm5C_associated_SNPs_131903 0 0 0 2 51897283 51897307 mRNA hsa-miR-449b IQCF2 miRanda miRanda
10022 chr3 195869737 195869737 1 + A C rs539530000 195869737 + 195869717 195869757 41 CATGATCATGCCTGGAGAACAGGGATGGACAGTCCCGCTTC CATGATCATGCCTGGAGAACCGGGATGGACAGTCCCGCTTC Direct Gain 0 0.942444170632467 0 0.929962992668152 prediction 0.884888341264934 Functional Gain - LINC00885 ENSG00000224652 ncRNA_exonic Human lincRNA chr3:195869737 chr3:195869737 . . 0 21 hm5C_associated_SNPs_131969 0 0 0 1 195869718 195869740 lncRNA hsa-miR-1266-3p LINC00885 miRanda starBase2
10023 chr9 130454111 130454111 1 + T C rs376329361 130454111 + 130454091 130454131 41 TGGAGAAGGTTCTTGGCCCGTTGGACTCACACAGACCCTGT TGGAGAAGGTTCTTGGCCCGCTGGACTCACACAGACCCTGT Direct Gain 0 0.941172963337544 0 0.465183734893799 prediction 0.882345926675089 Functional Gain - STXBP1 ENSG00000136854 UTR3 Human protein_coding chr9:130454111 chr9:130454111 . . 0 21 hm5C_associated_SNPs_132104 0 0 1 1 130454109 130454130 mRNA hsa-miR-296-3p STXBP1 miRanda miRanda
10024 chr3 100148663 100148663 1 + G C LUAD 100148663 + 100148643 100148683 41 AGCTGGAGAGAGGAGGATCAGAGAGGACTCCGGGAACGCCA AGCTGGAGAGAGGAGGATCACAGAGGACTCCGGGAACGCCA Direct Gain 0 0.940943633979466 0 0.762510657310486 prediction 0.881887267958932 Functional Gain - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100148663 chr3:100148663 nonsynonymous SNV 0.964 1 21 hm5C_associated_SNPs_132135 0 0 1 1 100148652 100148675 mRNA hsa-miR-127-3p LNP1 miRanda miRanda
10025 chr9 100362599 100362599 1 + T C rs9539 100362599 + 100362579 100362619 41 TGCTGGATATGCAGAAATGATAGGAAAAAAACCAATGGTGA TGCTGGATATGCAGAAATGACAGGAAAAAAACCAATGGTGA Direct Gain 0 0.940617485339717 0 0.738921940326691 prediction 0.881234970679433 Functional Gain - TMOD1;TSTD2 ENSG00000136842;ENSG00000136925 UTR3 Human other chr9:100362599 chr9:100362599 . . 0 21 hm5C_associated_SNPs_132171 0 0 0 1 100362599 100362620 mRNA hsa-miR-197 TMOD1 miRanda miRanda
10026 chr11 64087313 64087313 1 + T C COAD 64087313 + 64087293 64087333 41 GGTGTGCTGTTTGGAGTTCCTGGGGCCTTCACCCCTGGATG GGTGTGCTGTTTGGAGTTCCCGGGGCCTTCACCCCTGGATG Direct Gain 0 0.940600773638281 0 0.924065232276917 prediction 0.881201547276563 Functional Gain - PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64087313 chr11:64087313 synonymous SNV . 0 21 hm5C_associated_SNPs_132173 0 0 1 1 64087295 64087315 mRNA hsa-miR-873 PRDX5 miRanda miRanda
10027 chr1 7840599 7840599 1 + T C rs114023518 7840599 + 7840579 7840619 41 TGCATGGGGGTTAGAGAAGGTTTGAGGTAGACTCTGACCGT TGCATGGGGGTTAGAGAAGGCTTGAGGTAGACTCTGACCGT Direct Gain 0 0.940513543324162 0 0.232115536928177 prediction 0.881027086648323 Functional Gain - VAMP3 ENSG00000049245 UTR3 Human protein_coding chr1:7840599 chr1:7840599 . . 0 21 hm5C_associated_SNPs_132180 0 0 1 1 7840586 7840605 mRNA hsa-miR-371-5p VAMP3 miRanda miRanda
10028 chr3 16343302 16343302 1 + A C UCEC 16343302 + 16343282 16343322 41 CCTCAGAGAGCAGGCAAACAAAAGAAATGGATATGAGATAG CCTCAGAGAGCAGGCAAACACAAGAAATGGATATGAGATAG Direct Gain 0 0.939840886531924 0 0.519748985767365 prediction 0.879681773063848 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16343302 chr3:16343302 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_132234 0 0 1 2 16343301 16343322 mRNA hsa-miR-216a OXNAD1 miRanda miRanda
10029 chr3 16343302 16343302 1 + A C UCEC 16343302 + 16343282 16343322 41 CCTCAGAGAGCAGGCAAACAAAAGAAATGGATATGAGATAG CCTCAGAGAGCAGGCAAACACAAGAAATGGATATGAGATAG Direct Gain 0 0.939840886531924 0 0.519748985767365 prediction 0.879681773063848 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16343302 chr3:16343302 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_132234 0 0 1 2 16343292 16343314 mRNA hsa-miR-136 OXNAD1 miRanda miRanda
10030 chr17 37819124 37819124 1 + T C UCEC 37819124 + 37819104 37819144 41 GTTTGAATTTGCCTTTCACCTGCGACAGCGCATCAGCGAGC GTTTGAATTTGCCTTTCACCCGCGACAGCGCATCAGCGAGC Direct Gain 0 0.939586339711337 0 0.768528938293457 prediction 0.879172679422673 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37819124 chr17:37819124 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_132255 0 0 1 1 37819105 37819126 mRNA hsa-miR-125a-3p STARD3 miRanda miRanda