1 chr22 32297775 32297775 1 + G T LUSC 32297758 + 32297738 32297778 41 CGAAACGTACTGGGATCGAATGCACCTCTTCCAGGAAGCCA CGAAACGTACTGGGATCGAATGCACCTCTTCCAGGAATCCA < 41bp 1 0.0566021536305525 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32297758 chr22:32297775 nonsynonymous SNV 1.000 0 38 hm5U_associated_SNPs_45 0 0 0 2 32297758 32297780 mRNA hsa-miR-135a DEPDC5 miRanda miRanda
2 chr22 32297775 32297775 1 + G T LUSC 32297758 + 32297738 32297778 41 CGAAACGTACTGGGATCGAATGCACCTCTTCCAGGAAGCCA CGAAACGTACTGGGATCGAATGCACCTCTTCCAGGAATCCA < 41bp 1 0.0566021536305525 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32297758 chr22:32297775 nonsynonymous SNV 1.000 0 38 hm5U_associated_SNPs_45 0 0 0 2 32297758 32297780 mRNA hsa-miR-135b DEPDC5 miRanda miRanda
3 chr22 32297747 32297747 1 + C G LUSC 32297758 + 32297738 32297778 41 CGAAACGTACTGGGATCGAATGCACCTCTTCCAGGAAGCCA CGAAACGTAGTGGGATCGAATGCACCTCTTCCAGGAAGCCA < 41bp 1 0.061203635309695 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32297758 chr22:32297747 stopgain 0.997 0 10 hm5U_associated_SNPs_47 0 0 0 1 32297731 32297756 mRNA hsa-miR-551b DEPDC5 miRanda miRanda
4 chr22 32297739 32297739 1 + G A UCEC 32297758 + 32297738 32297778 41 CGAAACGTACTGGGATCGAATGCACCTCTTCCAGGAAGCCA CAAAACGTACTGGGATCGAATGCACCTCTTCCAGGAAGCCA < 41bp 1 0.0541848593404311 NA NA experiment 1 Functional Loss 31361898;GSE109183;miCLIP;HEK293;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32297758 chr22:32297739 nonsynonymous SNV 0.978 3 2 hm5U_associated_SNPs_59 0 0 0 1 32297731 32297756 mRNA hsa-miR-551b DEPDC5 miRanda miRanda
5 chr1 28975133 28975133 1 + T A UCEC 28975133 + 28975113 28975153 41 AAAAGGGCTTCTGTCGTGAGTGGCACACGTAGGGCAACTCG AAAAGGGCTTCTGTCGTGAGAGGCACACGTAGGGCAACTCG Direct Loss 0.999210781111283 0 NA NA prediction 0.998421562222565 Functional Loss - LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975133 chr1:28975133 . . 0 21 hm5U_associated_SNPs_100 0 0 1 1 28975112 28975133 mRNA hsa-miR-342-3p RNU11 miRanda miRanda
6 chr17 62223750 62223750 1 + T G rs554830608 62223750 + 62223730 62223770 41 CGTGGCGCCGGGGGTCAATCTGCAGCGCTAGAGCATGTGCT CGTGGCGCCGGGGGTCAATCGGCAGCGCTAGAGCATGTGCT Direct Loss 0.998819507152512 0 NA NA prediction 0.997639014305024 Functional Loss - SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223750 chr17:62223750 . . 0 21 hm5U_associated_SNPs_120 0 0 1 1 62223744 62223763 lncRNA hsa-miR-1251-5p SNHG25 miRanda starBase2
7 chr1 28975208 28975208 1 + T C BRCA 28975208 + 28975188 28975228 41 TCGGAAGCATAATTTTTTGGTATTTGGGCAGCTGGTGATCG TCGGAAGCATAATTTTTTGGCATTTGGGCAGCTGGTGATCG Direct Loss 0.998165396791802 0 NA NA prediction 0.996330793583604 Functional Loss - LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975208 chr1:28975208 . . 0 21 hm5U_associated_SNPs_153 0 0 1 2 28975197 28975221 mRNA hsa-miR-22 RNU11 miRanda miRanda
8 chr1 28975208 28975208 1 + T C BRCA 28975208 + 28975188 28975228 41 TCGGAAGCATAATTTTTTGGTATTTGGGCAGCTGGTGATCG TCGGAAGCATAATTTTTTGGCATTTGGGCAGCTGGTGATCG Direct Loss 0.998165396791802 0 NA NA prediction 0.996330793583604 Functional Loss - LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975208 chr1:28975208 . . 0 21 hm5U_associated_SNPs_153 0 0 1 2 28975197 28975221 lncRNA hsa-miR-22-3p AL360012.1 miRanda starBase2
9 chr5 177378324 177378324 1 + T A rs13162196 177378324 + 177378304 177378344 41 GAGGATGCTCAGGTGTGGCCTATCCAGCCCCTCAGTGTTTT GAGGATGCTCAGGTGTGGCCAATCCAGCCCCTCAGTGTTTT Direct Loss 0.995897355413507 0 NA NA prediction 0.991794710827014 Functional Loss - LOC728554;PROP1 ENSG00000249684;ENSG00000250101 ncRNA_intronic Human other chr5:177378324 chr5:177378324 . . 0 21 hm5U_associated_SNPs_279 0 0 0 2 177378322 177378343 mRNA hsa-miR-141 LOC100128340 miRanda miRanda
10 chr5 177378324 177378324 1 + T A rs13162196 177378324 + 177378304 177378344 41 GAGGATGCTCAGGTGTGGCCTATCCAGCCCCTCAGTGTTTT GAGGATGCTCAGGTGTGGCCAATCCAGCCCCTCAGTGTTTT Direct Loss 0.995897355413507 0 NA NA prediction 0.991794710827014 Functional Loss - LOC728554;PROP1 ENSG00000249684;ENSG00000250101 ncRNA_intronic Human other chr5:177378324 chr5:177378324 . . 0 21 hm5U_associated_SNPs_279 0 0 0 2 177378322 177378343 mRNA hsa-miR-200a LOC100128340 miRanda miRanda
11 chr6 116360141 116360141 1 + T C rs4628134 116360141 + 116360121 116360161 41 GTAACTAACGGGGCCTTTACTTGGGAGATCAGCCCTGGCAT GTAACTAACGGGGCCTTTACCTGGGAGATCAGCCCTGGCAT Direct Loss 0.992999393574058 0 NA NA prediction 0.985998787148116 Functional Loss - TPI1P3 ENSG00000186743 ncRNA_exonic Human processed_pseudogene chr6:116360141 chr6:116360141 . . 0 21 hm5U_associated_SNPs_443 0 0 0 1 116360127 116360148 mRNA hsa-miR-150 TPI1P3 miRanda miRanda
12 chr1 120906208 120906208 1 + T A LIHC 120906208 + 120906188 120906228 41 TCCACCCCGACACCGGCATCTCGTCCAAGGCCATGGGCATC TCCACCCCGACACCGGCATCACGTCCAAGGCCATGGGCATC Direct Loss 0.992905094037149 0 NA NA prediction 0.985810188074297 Functional Loss - HIST2H2BA ENSG00000223345 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:120906208 chr1:120906208 . . 0 21 hm5U_associated_SNPs_449 0 0 0 1 120906207 120906227 mRNA hsa-miR-874 HIST2H2BA miRanda miRanda
13 chr5 72794334 72794334 1 + T C rs541360504 72794334 + 72794314 72794354 41 GGTGGTCCACCCGAGACCCCTTGAGCACCAACCCTAGTCCC GGTGGTCCACCCGAGACCCCCTGAGCACCAACCCTAGTCCC Direct Loss 0.992155099640136 0 NA NA prediction 0.984310199280272 Functional Loss - BTF3 ENSG00000145741 UTR5 Human protein_coding chr5:72794334 chr5:72794334 . . 0 21 hm5U_associated_SNPs_514 0 0 1 1 72794325 72794349 mRNA hsa-miR-296-3p BTF3 miRanda miRanda
14 chr11 65191469 65191469 1 + T A rs139780885 65191469 + 65191449 65191489 41 GCAGATGGAACCGGGAGACATGGAGTCCCTGGCCAGTGTGA GCAGATGGAACCGGGAGACAAGGAGTCCCTGGCCAGTGTGA Direct Loss 0.991960260791887 0 NA NA prediction 0.983920521583774 Functional Loss - NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65191469 chr11:65191469 . . 0 21 hm5U_associated_SNPs_528 0 0 1 3 65191466 65191486 lncRNA hsa-miR-193a-3p NEAT1 miRanda starBase2
15 chr11 65191469 65191469 1 + T A rs139780885 65191469 + 65191449 65191489 41 GCAGATGGAACCGGGAGACATGGAGTCCCTGGCCAGTGTGA GCAGATGGAACCGGGAGACAAGGAGTCCCTGGCCAGTGTGA Direct Loss 0.991960260791887 0 NA NA prediction 0.983920521583774 Functional Loss - NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65191469 chr11:65191469 . . 0 21 hm5U_associated_SNPs_528 0 0 1 3 65191460 65191486 lncRNA hsa-miR-193b-3p NEAT1 miRanda starBase2
16 chr11 65191469 65191469 1 + T A rs139780885 65191469 + 65191449 65191489 41 GCAGATGGAACCGGGAGACATGGAGTCCCTGGCCAGTGTGA GCAGATGGAACCGGGAGACAAGGAGTCCCTGGCCAGTGTGA Direct Loss 0.991960260791887 0 NA NA prediction 0.983920521583774 Functional Loss - NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65191469 chr11:65191469 . . 0 21 hm5U_associated_SNPs_528 0 0 1 3 65191469 65191491 lncRNA hsa-miR-342-3p NEAT1 miRanda starBase2
17 chr7 64646843 64646843 1 + T G rs545499263 64646843 + 64646823 64646863 41 AGCATTGTTCTCAGGCACTATGCCTACCTCCGAGACAGTCT AGCATTGTTCTCAGGCACTAGGCCTACCTCCGAGACAGTCT Direct Loss 0.991751435593361 0 NA NA prediction 0.983502871186722 Functional Loss - INTS4P1 ENSG00000164669 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64646843 chr7:64646843 . . 0 21 hm5U_associated_SNPs_546 0 0 0 9 64646830 64646853 mRNA hsa-let-7a INTS4L1 miRanda miRanda
18 chr7 64646843 64646843 1 + T G rs545499263 64646843 + 64646823 64646863 41 AGCATTGTTCTCAGGCACTATGCCTACCTCCGAGACAGTCT AGCATTGTTCTCAGGCACTAGGCCTACCTCCGAGACAGTCT Direct Loss 0.991751435593361 0 NA NA prediction 0.983502871186722 Functional Loss - INTS4P1 ENSG00000164669 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64646843 chr7:64646843 . . 0 21 hm5U_associated_SNPs_546 0 0 0 9 64646831 64646853 mRNA hsa-let-7b INTS4L1 miRanda miRanda
19 chr7 64646843 64646843 1 + T G rs545499263 64646843 + 64646823 64646863 41 AGCATTGTTCTCAGGCACTATGCCTACCTCCGAGACAGTCT AGCATTGTTCTCAGGCACTAGGCCTACCTCCGAGACAGTCT Direct Loss 0.991751435593361 0 NA NA prediction 0.983502871186722 Functional Loss - INTS4P1 ENSG00000164669 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64646843 chr7:64646843 . . 0 21 hm5U_associated_SNPs_546 0 0 0 9 64646831 64646853 mRNA hsa-let-7c INTS4L1 miRanda miRanda
20 chr7 64646843 64646843 1 + T G rs545499263 64646843 + 64646823 64646863 41 AGCATTGTTCTCAGGCACTATGCCTACCTCCGAGACAGTCT AGCATTGTTCTCAGGCACTAGGCCTACCTCCGAGACAGTCT Direct Loss 0.991751435593361 0 NA NA prediction 0.983502871186722 Functional Loss - INTS4P1 ENSG00000164669 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64646843 chr7:64646843 . . 0 21 hm5U_associated_SNPs_546 0 0 0 9 64646830 64646853 mRNA hsa-let-7d INTS4L1 miRanda miRanda
21 chr7 64646843 64646843 1 + T G rs545499263 64646843 + 64646823 64646863 41 AGCATTGTTCTCAGGCACTATGCCTACCTCCGAGACAGTCT AGCATTGTTCTCAGGCACTAGGCCTACCTCCGAGACAGTCT Direct Loss 0.991751435593361 0 NA NA prediction 0.983502871186722 Functional Loss - INTS4P1 ENSG00000164669 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64646843 chr7:64646843 . . 0 21 hm5U_associated_SNPs_546 0 0 0 9 64646830 64646853 mRNA hsa-let-7e INTS4L1 miRanda miRanda
22 chr7 64646843 64646843 1 + T G rs545499263 64646843 + 64646823 64646863 41 AGCATTGTTCTCAGGCACTATGCCTACCTCCGAGACAGTCT AGCATTGTTCTCAGGCACTAGGCCTACCTCCGAGACAGTCT Direct Loss 0.991751435593361 0 NA NA prediction 0.983502871186722 Functional Loss - INTS4P1 ENSG00000164669 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64646843 chr7:64646843 . . 0 21 hm5U_associated_SNPs_546 0 0 0 9 64646830 64646853 mRNA hsa-let-7f INTS4L1 miRanda miRanda
23 chr7 64646843 64646843 1 + T G rs545499263 64646843 + 64646823 64646863 41 AGCATTGTTCTCAGGCACTATGCCTACCTCCGAGACAGTCT AGCATTGTTCTCAGGCACTAGGCCTACCTCCGAGACAGTCT Direct Loss 0.991751435593361 0 NA NA prediction 0.983502871186722 Functional Loss - INTS4P1 ENSG00000164669 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64646843 chr7:64646843 . . 0 21 hm5U_associated_SNPs_546 0 0 0 9 64646831 64646853 mRNA hsa-miR-98 INTS4L1 miRanda miRanda
24 chr7 64646843 64646843 1 + T G rs545499263 64646843 + 64646823 64646863 41 AGCATTGTTCTCAGGCACTATGCCTACCTCCGAGACAGTCT AGCATTGTTCTCAGGCACTAGGCCTACCTCCGAGACAGTCT Direct Loss 0.991751435593361 0 NA NA prediction 0.983502871186722 Functional Loss - INTS4P1 ENSG00000164669 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64646843 chr7:64646843 . . 0 21 hm5U_associated_SNPs_546 0 0 0 9 64646829 64646853 mRNA hsa-let-7g INTS4L1 miRanda miRanda
25 chr7 64646843 64646843 1 + T G rs545499263 64646843 + 64646823 64646863 41 AGCATTGTTCTCAGGCACTATGCCTACCTCCGAGACAGTCT AGCATTGTTCTCAGGCACTAGGCCTACCTCCGAGACAGTCT Direct Loss 0.991751435593361 0 NA NA prediction 0.983502871186722 Functional Loss - INTS4P1 ENSG00000164669 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64646843 chr7:64646843 . . 0 21 hm5U_associated_SNPs_546 0 0 0 9 64646833 64646853 mRNA hsa-let-7i INTS4L1 miRanda miRanda
26 chr20 43538875 43538875 1 + T C UCEC 43538875 + 43538855 43538895 41 AGGCCATGCTCTATGAGAAGTTCTCTCCCGCCGGCCCCATC AGGCCATGCTCTATGAGAAGCTCTCTCCCGCCGGCCCCATC Direct Loss 0.991437288389693 0 NA NA prediction 0.982874576779385 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43538875 chr20:43538875 nonsynonymous SNV 0.991 4 21 hm5U_associated_SNPs_571 0 0 1 3 43538862 43538880 mRNA hsa-miR-146a PABPC1L miRanda miRanda
27 chr20 43538875 43538875 1 + T C UCEC 43538875 + 43538855 43538895 41 AGGCCATGCTCTATGAGAAGTTCTCTCCCGCCGGCCCCATC AGGCCATGCTCTATGAGAAGCTCTCTCCCGCCGGCCCCATC Direct Loss 0.991437288389693 0 NA NA prediction 0.982874576779385 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43538875 chr20:43538875 nonsynonymous SNV 0.991 4 21 hm5U_associated_SNPs_571 0 0 1 3 43538862 43538883 mRNA hsa-miR-185 PABPC1L miRanda miRanda
28 chr20 43538875 43538875 1 + T C UCEC 43538875 + 43538855 43538895 41 AGGCCATGCTCTATGAGAAGTTCTCTCCCGCCGGCCCCATC AGGCCATGCTCTATGAGAAGCTCTCTCCCGCCGGCCCCATC Direct Loss 0.991437288389693 0 NA NA prediction 0.982874576779385 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43538875 chr20:43538875 nonsynonymous SNV 0.991 4 21 hm5U_associated_SNPs_571 0 0 1 3 43538862 43538880 mRNA hsa-miR-146b-5p PABPC1L miRanda miRanda
29 chr5 177378326 177378326 1 + T G rs190225706 177378326 + 177378306 177378346 41 GGATGCTCAGGTGTGGCCTATCCAGCCCCTCAGTGTTTTCC GGATGCTCAGGTGTGGCCTAGCCAGCCCCTCAGTGTTTTCC Direct Loss 0.990613474301401 0 NA NA prediction 0.981226948602803 Functional Loss - LOC728554;PROP1 ENSG00000249684;ENSG00000250101 ncRNA_intronic Human other chr5:177378326 chr5:177378326 . . 0 21 hm5U_associated_SNPs_616 0 0 0 2 177378322 177378343 mRNA hsa-miR-141 LOC100128340 miRanda miRanda
30 chr5 177378326 177378326 1 + T G rs190225706 177378326 + 177378306 177378346 41 GGATGCTCAGGTGTGGCCTATCCAGCCCCTCAGTGTTTTCC GGATGCTCAGGTGTGGCCTAGCCAGCCCCTCAGTGTTTTCC Direct Loss 0.990613474301401 0 NA NA prediction 0.981226948602803 Functional Loss - LOC728554;PROP1 ENSG00000249684;ENSG00000250101 ncRNA_intronic Human other chr5:177378326 chr5:177378326 . . 0 21 hm5U_associated_SNPs_616 0 0 0 2 177378322 177378343 mRNA hsa-miR-200a LOC100128340 miRanda miRanda
31 chr12 116972383 116972383 1 + T G UCEC 116972383 + 116972363 116972403 41 GCTGGCCGGCCCGCAGGAAATTTATATGCTCAGCACAAACC GCTGGCCGGCCCGCAGGAAAGTTATATGCTCAGCACAAACC Direct Loss 0.990355998334009 0 NA NA prediction 0.980711996668018 Functional Loss - LINC00173 ENSG00000196668 ncRNA_exonic Human processed_transcript chr12:116972383 chr12:116972383 . . 0 21 hm5U_associated_SNPs_633 0 0 1 1 116972380 116972400 mRNA hsa-miR-218 NCRNA00173 miRanda miRanda
32 chr15 25427409 25427409 1 + T A HNSC 25427409 + 25427389 25427429 41 GTCAGCGTCCATCAGCCAGGTGTCCAGCCCCTGGTGCACTG GTCAGCGTCCATCAGCCAGGAGTCCAGCCCCTGGTGCACTG Direct Loss 0.990257746847165 0 NA NA prediction 0.980515493694331 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25427409 chr15:25427409 . . 0 21 hm5U_associated_SNPs_637 0 0 0 2 25427409 25427430 mRNA hsa-miR-148a SNRPN miRanda miRanda
33 chr15 25427409 25427409 1 + T A HNSC 25427409 + 25427389 25427429 41 GTCAGCGTCCATCAGCCAGGTGTCCAGCCCCTGGTGCACTG GTCAGCGTCCATCAGCCAGGAGTCCAGCCCCTGGTGCACTG Direct Loss 0.990257746847165 0 NA NA prediction 0.980515493694331 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25427409 chr15:25427409 . . 0 21 hm5U_associated_SNPs_637 0 0 0 2 25427409 25427430 mRNA hsa-miR-148b SNRPN miRanda miRanda
34 chr16 56678669 56678669 1 + T A LUSC 56678669 + 56678649 56678689 41 GTGCCAAATGTGCCCAGGGCTGCACCTGAAAAGGGGCATTG GTGCCAAATGTGCCCAGGGCAGCACCTGAAAAGGGGCATTG Direct Loss 0.988315719731733 0 NA NA prediction 0.976631439463466 Functional Loss - MT1DP ENSG00000205361 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:56678669 chr16:56678669 . . 0 21 hm5U_associated_SNPs_764 0 0 0 1 56678668 56678689 mRNA hsa-miR-365 MT1DP miRanda miRanda
35 chr12 116972384 116972384 1 + T G UCEC 116972384 + 116972364 116972404 41 CTGGCCGGCCCGCAGGAAATTTATATGCTCAGCACAAACCA CTGGCCGGCCCGCAGGAAATGTATATGCTCAGCACAAACCA Direct Loss 0.98740828061982 0 NA NA prediction 0.97481656123964 Functional Loss - LINC00173 ENSG00000196668 ncRNA_exonic Human processed_transcript chr12:116972384 chr12:116972384 . . 0 21 hm5U_associated_SNPs_823 0 0 1 1 116972380 116972400 mRNA hsa-miR-218 NCRNA00173 miRanda miRanda
36 chr1 109643058 109643058 1 + C T SKCM 109643058 + 109643038 109643078 41 CGAAATGAAAAGCTCTCCTCCTGCGAAGCCCCCTCGGGGCG CGAAATGAAAAGCTCTCCTCTTGCGAAGCCCCCTCGGGGCG Direct Gain 0 0.994527851840753 NA NA prediction 0.989055703681505 Functional Gain - SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643058 chr1:109643058 . . 0 21 hm5U_associated_SNPs_1920 0 0 1 2 109643038 109643058 lncRNA hsa-miR-3150b-3p AL356488.2 miRanda starBase2
37 chr1 109643058 109643058 1 + C T SKCM 109643058 + 109643038 109643078 41 CGAAATGAAAAGCTCTCCTCCTGCGAAGCCCCCTCGGGGCG CGAAATGAAAAGCTCTCCTCTTGCGAAGCCCCCTCGGGGCG Direct Gain 0 0.994527851840753 NA NA prediction 0.989055703681505 Functional Gain - SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643058 chr1:109643058 . . 0 21 hm5U_associated_SNPs_1920 0 0 1 2 109643040 109643058 lncRNA hsa-miR-4784 AL356488.2 miRanda starBase2
38 chr1 28975130 28975130 1 + G T BRCA 28975130 + 28975110 28975150 41 GCAAAAAGGGCTTCTGTCGTGAGTGGCACACGTAGGGCAAC GCAAAAAGGGCTTCTGTCGTTAGTGGCACACGTAGGGCAAC Direct Gain 0 0.994401253268966 NA NA prediction 0.988802506537932 Functional Gain - LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975130 chr1:28975130 . . 0 21 hm5U_associated_SNPs_2005 0 0 1 2 28975112 28975132 mRNA hsa-miR-377 RNU11 miRanda miRanda
39 chr1 28975130 28975130 1 + G T BRCA 28975130 + 28975110 28975150 41 GCAAAAAGGGCTTCTGTCGTGAGTGGCACACGTAGGGCAAC GCAAAAAGGGCTTCTGTCGTTAGTGGCACACGTAGGGCAAC Direct Gain 0 0.994401253268966 NA NA prediction 0.988802506537932 Functional Gain - LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975130 chr1:28975130 . . 0 21 hm5U_associated_SNPs_2005 0 0 1 2 28975112 28975133 mRNA hsa-miR-342-3p RNU11 miRanda miRanda
40 chr17 62223718 62223718 1 + G T SARC 62223718 + 62223698 62223738 41 CGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCC CGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGCGCC Direct Gain 0 0.994296275924642 NA NA prediction 0.988592551849284 Functional Gain - SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223718 chr17:62223718 . . 0 21 hm5U_associated_SNPs_2080 0 0 1 4 62223703 62223724 lncRNA hsa-miR-1307-3p SNHG25 miRanda starBase2
41 chr17 62223718 62223718 1 + G T SARC 62223718 + 62223698 62223738 41 CGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCC CGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGCGCC Direct Gain 0 0.994296275924642 NA NA prediction 0.988592551849284 Functional Gain - SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223718 chr17:62223718 . . 0 21 hm5U_associated_SNPs_2080 0 0 1 4 62223701 62223721 lncRNA hsa-miR-1908-5p SNHG25 miRanda starBase2
42 chr17 62223718 62223718 1 + G T SARC 62223718 + 62223698 62223738 41 CGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCC CGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGCGCC Direct Gain 0 0.994296275924642 NA NA prediction 0.988592551849284 Functional Gain - SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223718 chr17:62223718 . . 0 21 hm5U_associated_SNPs_2080 0 0 1 4 62223701 62223721 lncRNA hsa-miR-663a SNHG25 miRanda starBase2
43 chr17 62223718 62223718 1 + G T SARC 62223718 + 62223698 62223738 41 CGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCC CGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGCGCC Direct Gain 0 0.994296275924642 NA NA prediction 0.988592551849284 Functional Gain - SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223718 chr17:62223718 . . 0 21 hm5U_associated_SNPs_2080 0 0 1 4 62223698 62223721 lncRNA hsa-miR-6787-5p SNHG25 miRanda starBase2
44 chr10 21805371 21805371 1 + C T UCEC 21805371 + 21805351 21805391 41 CCTGAATCGGATGCTCTGCACTGACACTTGGCTGGAGCCGG CCTGAATCGGATGCTCTGCATTGACACTTGGCTGGAGCCGG Direct Gain 0 0.987548532512786 NA NA prediction 0.975097065025572 Functional Gain - SKIDA1 ENSG00000180592 CDS Human protein_coding chr10:21805371 chr10:21805371 nonsynonymous SNV 1.000 2 21 hm5U_associated_SNPs_9658 0 0 0 3 21805353 21805374 mRNA hsa-miR-148a LOC219688 miRanda miRanda
45 chr10 21805371 21805371 1 + C T UCEC 21805371 + 21805351 21805391 41 CCTGAATCGGATGCTCTGCACTGACACTTGGCTGGAGCCGG CCTGAATCGGATGCTCTGCATTGACACTTGGCTGGAGCCGG Direct Gain 0 0.987548532512786 NA NA prediction 0.975097065025572 Functional Gain - SKIDA1 ENSG00000180592 CDS Human protein_coding chr10:21805371 chr10:21805371 nonsynonymous SNV 1.000 2 21 hm5U_associated_SNPs_9658 0 0 0 3 21805354 21805374 mRNA hsa-miR-152 LOC219688 miRanda miRanda
46 chr10 21805371 21805371 1 + C T UCEC 21805371 + 21805351 21805391 41 CCTGAATCGGATGCTCTGCACTGACACTTGGCTGGAGCCGG CCTGAATCGGATGCTCTGCATTGACACTTGGCTGGAGCCGG Direct Gain 0 0.987548532512786 NA NA prediction 0.975097065025572 Functional Gain - SKIDA1 ENSG00000180592 CDS Human protein_coding chr10:21805371 chr10:21805371 nonsynonymous SNV 1.000 2 21 hm5U_associated_SNPs_9658 0 0 0 3 21805353 21805374 mRNA hsa-miR-148b LOC219688 miRanda miRanda