1 chr6 134308470 134308470 1 + T C rs113474757 134308450 + 134308430 134308470 41 TCCCCATAAGCAGAGCTGTCACAGTGTGCACTACCTTAGAT TCCCCATAAGCAGAGCTGTCACAGTGTGCACTACCTTAGAC < 41bp 1 0.405153752733763 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control TBPL1 ENSG00000028839 UTR3 Human protein_coding chr6:134308450 chr6:134308470 . . 0 41 hm6Am_associated_SNPs_26 0 0 1 1 134308469 134308492 mRNA hsa-miR-141 TBPL1 miRanda miRanda
2 chr11 18429071 18429071 1 + C G rs76818137 18429086 + 18429066 18429106 41 TCTGCCACCTCTGACGCACCACTGCCAATGCTGTACGTACT TCTGCGACCTCTGACGCACCACTGCCAATGCTGTACGTACT < 41bp 1 0.247355024472637 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control LDHA ENSG00000134333 UTR3 Human protein_coding chr11:18429086 chr11:18429071 . . 0 6 hm6Am_associated_SNPs_27 1 0 1 4 18429069 18429092 mRNA hsa-miR-34a LDHA miRanda miRanda
3 chr11 18429071 18429071 1 + C G rs76818137 18429086 + 18429066 18429106 41 TCTGCCACCTCTGACGCACCACTGCCAATGCTGTACGTACT TCTGCGACCTCTGACGCACCACTGCCAATGCTGTACGTACT < 41bp 1 0.247355024472637 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control LDHA ENSG00000134333 UTR3 Human protein_coding chr11:18429086 chr11:18429071 . . 0 6 hm6Am_associated_SNPs_27 1 0 1 4 18429068 18429092 mRNA hsa-miR-34c-5p LDHA miRanda miRanda
4 chr11 18429071 18429071 1 + C G rs76818137 18429086 + 18429066 18429106 41 TCTGCCACCTCTGACGCACCACTGCCAATGCTGTACGTACT TCTGCGACCTCTGACGCACCACTGCCAATGCTGTACGTACT < 41bp 1 0.247355024472637 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control LDHA ENSG00000134333 UTR3 Human protein_coding chr11:18429086 chr11:18429071 . . 0 6 hm6Am_associated_SNPs_27 1 0 1 4 18429071 18429092 mRNA hsa-miR-449a LDHA miRanda miRanda
5 chr11 18429071 18429071 1 + C G rs76818137 18429086 + 18429066 18429106 41 TCTGCCACCTCTGACGCACCACTGCCAATGCTGTACGTACT TCTGCGACCTCTGACGCACCACTGCCAATGCTGTACGTACT < 41bp 1 0.247355024472637 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control LDHA ENSG00000134333 UTR3 Human protein_coding chr11:18429086 chr11:18429071 . . 0 6 hm6Am_associated_SNPs_27 1 0 1 4 18429071 18429092 mRNA hsa-miR-449b LDHA miRanda miRanda
6 chr12 131360740 131360740 1 + A G rs149187550 131360737 + 131360717 131360757 41 AAGACTGCTGCAGTCACATCACAATATTCAGTGGTGAAATC AAGACTGCTGCAGTCACATCACAGTATTCAGTGGTGAAATC < 41bp 1 0.248489042478196 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control RAN ENSG00000132341 UTR3 Human protein_coding chr12:131360737 chr12:131360740 . . 0 24 hm6Am_associated_SNPs_30 0 0 1 2 131360733 131360754 mRNA hsa-miR-197 RAN miRanda miRanda
7 chr12 131360740 131360740 1 + A G rs149187550 131360737 + 131360717 131360757 41 AAGACTGCTGCAGTCACATCACAATATTCAGTGGTGAAATC AAGACTGCTGCAGTCACATCACAGTATTCAGTGGTGAAATC < 41bp 1 0.248489042478196 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control RAN ENSG00000132341 UTR3 Human protein_coding chr12:131360737 chr12:131360740 . . 0 24 hm6Am_associated_SNPs_30 0 0 1 2 131360737 131360759 mRNA hsa-miR-876-5p RAN miRanda miRanda
8 chr13 26978356 26978356 1 + C T rs548621768 26978357 + 26978337 26978377 41 TCCAGTAGCCAAGTTCCACCACTTTTCACAGATTGGGGTAG TCCAGTAGCCAAGTTCCACTACTTTTCACAGATTGGGGTAG < 41bp 1 0.443512024716319 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control CDK8 ENSG00000132964 UTR3 Human protein_coding chr13:26978357 chr13:26978356 . . 0 20 hm6Am_associated_SNPs_31 0 0 1 1 26978339 26978360 mRNA hsa-miR-140-5p CDK8 miRanda miRanda
9 chr20 57485765 57485765 1 + C T COAD 57485769 + 57485749 57485789 41 TGCCAGTGGAGATGGGCGTCACTACTGCTACCCTCATTTCA TGCCAGTGGAGATGGGTGTCACTACTGCTACCCTCATTTCA < 41bp 1 0.510947767168673 NA NA experiment 0.978104465662653 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485769 chr20:57485765 nonsynonymous SNV 0.999 5 17 hm6Am_associated_SNPs_63 0 0 1 4 57485763 57485784 mRNA hsa-let-7b GNAS miRanda miRanda
10 chr20 57485765 57485765 1 + C T COAD 57485769 + 57485749 57485789 41 TGCCAGTGGAGATGGGCGTCACTACTGCTACCCTCATTTCA TGCCAGTGGAGATGGGTGTCACTACTGCTACCCTCATTTCA < 41bp 1 0.510947767168673 NA NA experiment 0.978104465662653 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485769 chr20:57485765 nonsynonymous SNV 0.999 5 17 hm6Am_associated_SNPs_63 0 0 1 4 57485762 57485784 mRNA hsa-let-7c GNAS miRanda miRanda
11 chr20 57485765 57485765 1 + C T COAD 57485769 + 57485749 57485789 41 TGCCAGTGGAGATGGGCGTCACTACTGCTACCCTCATTTCA TGCCAGTGGAGATGGGTGTCACTACTGCTACCCTCATTTCA < 41bp 1 0.510947767168673 NA NA experiment 0.978104465662653 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485769 chr20:57485765 nonsynonymous SNV 0.999 5 17 hm6Am_associated_SNPs_63 0 0 1 4 57485762 57485784 mRNA hsa-let-7g GNAS miRanda miRanda
12 chr20 57485765 57485765 1 + C T COAD 57485769 + 57485749 57485789 41 TGCCAGTGGAGATGGGCGTCACTACTGCTACCCTCATTTCA TGCCAGTGGAGATGGGTGTCACTACTGCTACCCTCATTTCA < 41bp 1 0.510947767168673 NA NA experiment 0.978104465662653 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485769 chr20:57485765 nonsynonymous SNV 0.999 5 17 hm6Am_associated_SNPs_63 0 0 1 4 57485763 57485784 mRNA hsa-let-7i GNAS miRanda miRanda
13 chr12 120984320 120984320 1 + G C KIRC 120984308 + 120984288 120984328 41 CAGTCCCGTCGCTCCAGTTCACAGAAAAGCAAGACTTTTAA CAGTCCCGTCGCTCCAGTTCACAGAAAAGCAACACTTTTAA < 41bp 1 0.363360252488671 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control RNF10 ENSG00000022840 CDS Human protein_coding chr12:120984308 chr12:120984320 nonsynonymous SNV 0.997 5 33 hm6Am_associated_SNPs_88 0 0 1 1 120984303 120984323 mRNA hsa-miR-431 RNF10 miRanda miRanda
14 chr16 29819900 29819900 1 + G A LUSC 29819912 + 29819892 29819932 41 AATGTGAGGCAGCTTTCGCCACGAAGGATCGGCTGCGGGCG AATGTGAGACAGCTTTCGCCACGAAGGATCGGCTGCGGGCG < 41bp 1 0.595425999829594 NA NA experiment 0.809148000340811 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control MAZ ENSG00000103495 CDS Human protein_coding chr16:29819912 chr16:29819900 nonsynonymous SNV 1.000 4 9 hm6Am_associated_SNPs_110 0 0 1 1 29819885 29819906 mRNA hsa-miR-22 MAZ miRanda miRanda
15 chrX 73040564 73040564 1 - G T SARC 73040583 - 73040563 73040603 41 ATTGTTCAGCATGGGTGACCACCAGAAAGTAATCTTAAGCC ATTGTTCAGCATGGGTGACCACCAGAAAGTAATCTTAAGAC < 41bp 1 0.125391156550656 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040583 chrX:73040564 . . 0 40 hm6Am_associated_SNPs_126 0 0 1 4 73040560 73040582 lncRNA hsa-miR-135a-5p XIST miRanda starBase2
16 chrX 73040564 73040564 1 - G T SARC 73040583 - 73040563 73040603 41 ATTGTTCAGCATGGGTGACCACCAGAAAGTAATCTTAAGCC ATTGTTCAGCATGGGTGACCACCAGAAAGTAATCTTAAGAC < 41bp 1 0.125391156550656 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040583 chrX:73040564 . . 0 40 hm6Am_associated_SNPs_126 0 0 1 4 73040560 73040582 lncRNA hsa-miR-135b-5p XIST miRanda starBase2
17 chrX 73040564 73040564 1 - G T SARC 73040583 - 73040563 73040603 41 ATTGTTCAGCATGGGTGACCACCAGAAAGTAATCTTAAGCC ATTGTTCAGCATGGGTGACCACCAGAAAGTAATCTTAAGAC < 41bp 1 0.125391156550656 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040583 chrX:73040564 . . 0 40 hm6Am_associated_SNPs_126 0 0 1 4 73040550 73040568 lncRNA hsa-miR-489-3p XIST miRanda starBase2
18 chrX 73040564 73040564 1 - G T SARC 73040583 - 73040563 73040603 41 ATTGTTCAGCATGGGTGACCACCAGAAAGTAATCTTAAGCC ATTGTTCAGCATGGGTGACCACCAGAAAGTAATCTTAAGAC < 41bp 1 0.125391156550656 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040583 chrX:73040564 . . 0 40 hm6Am_associated_SNPs_126 0 0 1 4 73040547 73040570 lncRNA hsa-miR-758-3p XIST miRanda starBase2
19 chrX 73040873 73040873 1 - G A SKCM 73040868 - 73040848 73040888 41 TAACTAAAAGCCTTCCTTTCACAGTTTCTGGCATCACTACC TAACTAAAAGCCTTCTTTTCACAGTTTCTGGCATCACTACC < 41bp 1 0.197213503715599 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040868 chrX:73040873 . . 0 16 hm6Am_associated_SNPs_146 0 0 1 1 73040867 73040887 lncRNA hsa-miR-488-3p XIST miRanda starBase2
20 chr12 120984304 120984304 1 + G C STAD 120984308 + 120984288 120984328 41 CAGTCCCGTCGCTCCAGTTCACAGAAAAGCAAGACTTTTAA CAGTCCCGTCGCTCCACTTCACAGAAAAGCAAGACTTTTAA < 41bp 1 0.352056484516058 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control RNF10 ENSG00000022840 CDS Human protein_coding chr12:120984308 chr12:120984304 nonsynonymous SNV 0.999 2 17 hm6Am_associated_SNPs_153 0 0 1 1 120984303 120984323 mRNA hsa-miR-431 RNF10 miRanda miRanda
21 chr19 49517829 49517829 1 + G A UCEC 49517814 + 49517794 49517834 41 ACCGGCTGCTTATCGTCTCCACCACCCCCTACAGCGAGAAA ACCGGCTGCTTATCGTCTCCACCACCCCCTACAGCAAGAAA < 41bp 1 0.266045840049875 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49517814 chr19:49517829 nonsynonymous SNV 0.995 1 36 hm6Am_associated_SNPs_158 0 0 1 1 49517821 49517841 mRNA hsa-miR-187 RUVBL2 miRanda miRanda
22 chr20 57485766 57485766 1 + G A UCEC 57485769 + 57485749 57485789 41 TGCCAGTGGAGATGGGCGTCACTACTGCTACCCTCATTTCA TGCCAGTGGAGATGGGCATCACTACTGCTACCCTCATTTCA < 41bp 1 0.519575205954548 NA NA experiment 0.960849588090903 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485769 chr20:57485766 nonsynonymous SNV 1.000 4 18 hm6Am_associated_SNPs_165 0 0 1 4 57485763 57485784 mRNA hsa-let-7b GNAS miRanda miRanda
23 chr20 57485766 57485766 1 + G A UCEC 57485769 + 57485749 57485789 41 TGCCAGTGGAGATGGGCGTCACTACTGCTACCCTCATTTCA TGCCAGTGGAGATGGGCATCACTACTGCTACCCTCATTTCA < 41bp 1 0.519575205954548 NA NA experiment 0.960849588090903 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485769 chr20:57485766 nonsynonymous SNV 1.000 4 18 hm6Am_associated_SNPs_165 0 0 1 4 57485762 57485784 mRNA hsa-let-7c GNAS miRanda miRanda
24 chr20 57485766 57485766 1 + G A UCEC 57485769 + 57485749 57485789 41 TGCCAGTGGAGATGGGCGTCACTACTGCTACCCTCATTTCA TGCCAGTGGAGATGGGCATCACTACTGCTACCCTCATTTCA < 41bp 1 0.519575205954548 NA NA experiment 0.960849588090903 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485769 chr20:57485766 nonsynonymous SNV 1.000 4 18 hm6Am_associated_SNPs_165 0 0 1 4 57485762 57485784 mRNA hsa-let-7g GNAS miRanda miRanda
25 chr20 57485766 57485766 1 + G A UCEC 57485769 + 57485749 57485789 41 TGCCAGTGGAGATGGGCGTCACTACTGCTACCCTCATTTCA TGCCAGTGGAGATGGGCATCACTACTGCTACCCTCATTTCA < 41bp 1 0.519575205954548 NA NA experiment 0.960849588090903 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57485769 chr20:57485766 nonsynonymous SNV 1.000 4 18 hm6Am_associated_SNPs_165 0 0 1 4 57485763 57485784 mRNA hsa-let-7i GNAS miRanda miRanda
26 chrX 73040861 73040861 1 - G T UCEC 73040868 - 73040848 73040888 41 TAACTAAAAGCCTTCCTTTCACAGTTTCTGGCATCACTACC TAACTAAAAGCCTTCCTTTCACAGTTTATGGCATCACTACC < 41bp 1 0.164154623732705 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040868 chrX:73040861 . . 0 28 hm6Am_associated_SNPs_172 0 0 1 3 73040840 73040861 lncRNA hsa-miR-199a-3p XIST miRanda starBase2
27 chrX 73040861 73040861 1 - G T UCEC 73040868 - 73040848 73040888 41 TAACTAAAAGCCTTCCTTTCACAGTTTCTGGCATCACTACC TAACTAAAAGCCTTCCTTTCACAGTTTATGGCATCACTACC < 41bp 1 0.164154623732705 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040868 chrX:73040861 . . 0 28 hm6Am_associated_SNPs_172 0 0 1 3 73040840 73040861 lncRNA hsa-miR-199b-3p XIST miRanda starBase2
28 chrX 73040861 73040861 1 - G T UCEC 73040868 - 73040848 73040888 41 TAACTAAAAGCCTTCCTTTCACAGTTTCTGGCATCACTACC TAACTAAAAGCCTTCCTTTCACAGTTTATGGCATCACTACC < 41bp 1 0.164154623732705 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040868 chrX:73040861 . . 0 28 hm6Am_associated_SNPs_172 0 0 1 3 73040840 73040862 lncRNA hsa-miR-3129-5p XIST miRanda starBase2
29 chrX 73040574 73040574 1 - A G UCEC 73040583 - 73040563 73040603 41 ATTGTTCAGCATGGGTGACCACCAGAAAGTAATCTTAAGCC ATTGTTCAGCATGGGTGACCACCAGAAAGCAATCTTAAGCC < 41bp 1 0.133242514876426 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040583 chrX:73040574 . . 0 30 hm6Am_associated_SNPs_174 0 0 1 2 73040560 73040582 lncRNA hsa-miR-135a-5p XIST miRanda starBase2
30 chrX 73040574 73040574 1 - A G UCEC 73040583 - 73040563 73040603 41 ATTGTTCAGCATGGGTGACCACCAGAAAGTAATCTTAAGCC ATTGTTCAGCATGGGTGACCACCAGAAAGCAATCTTAAGCC < 41bp 1 0.133242514876426 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040583 chrX:73040574 . . 0 30 hm6Am_associated_SNPs_174 0 0 1 2 73040560 73040582 lncRNA hsa-miR-135b-5p XIST miRanda starBase2
31 chr19 49517808 49517808 1 + G A UCEC 49517814 + 49517794 49517834 41 ACCGGCTGCTTATCGTCTCCACCACCCCCTACAGCGAGAAA ACCGGCTGCTTATCATCTCCACCACCCCCTACAGCGAGAAA < 41bp 1 0.25817291768538 NA NA experiment 1 Functional Loss 26121403;GSE63753;miCLIP;HEK293;Control RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49517814 chr19:49517808 nonsynonymous SNV 0.871 0 15 hm6Am_associated_SNPs_176 0 0 1 1 49517792 49517814 mRNA hsa-miR-185 RUVBL2 miRanda miRanda
32 chr5 147443547 147443547 1 + A C rs74572734 147443547 + 147443527 147443567 41 GCATCGCCCCGAGTTCAGTCATACTGCACCAGCTGAGCAAT GCATCGCCCCGAGTTCAGTCCTACTGCACCAGCTGAGCAAT Direct Loss 0.996741046886259 0 NA NA prediction 0.993482093772519 Functional Loss - SPINK5 ENSG00000133710 UTR5 Human protein_coding chr5:147443547 chr5:147443547 . . 0 21 hm6Am_associated_SNPs_235 1 0 0 1 147443536 147443560 mRNA hsa-miR-138 SPINK5 miRanda miRanda
33 chr17 58677622 58677622 1 + A C rs577443569 58677622 + 58677602 58677642 41 CAGCTCTCGCGGACAAGTCCAGACATCGCGCGCCCCCCCTT CAGCTCTCGCGGACAAGTCCCGACATCGCGCGCCCCCCCTT Direct Loss 0.995913020912898 0 NA NA prediction 0.991826041825796 Functional Loss - PPM1D ENSG00000170836 UTR5 Human protein_coding chr17:58677622 chr17:58677622 . . 0 21 hm6Am_associated_SNPs_252 0 0 0 2 58677603 58677624 mRNA hsa-miR-378 PPM1D miRanda miRanda
34 chr17 58677622 58677622 1 + A C rs577443569 58677622 + 58677602 58677642 41 CAGCTCTCGCGGACAAGTCCAGACATCGCGCGCCCCCCCTT CAGCTCTCGCGGACAAGTCCCGACATCGCGCGCCCCCCCTT Direct Loss 0.995913020912898 0 NA NA prediction 0.991826041825796 Functional Loss - PPM1D ENSG00000170836 UTR5 Human protein_coding chr17:58677622 chr17:58677622 . . 0 21 hm6Am_associated_SNPs_252 0 0 0 2 58677603 58677624 mRNA hsa-miR-422a PPM1D miRanda miRanda
35 chr5 115298172 115298172 1 + A G rs150861277 115298172 + 115298152 115298192 41 ACCGCTGTCTGCTGAGCTCCAGTCCGTCCAGGCTCTTCCAG ACCGCTGTCTGCTGAGCTCCGGTCCGTCCAGGCTCTTCCAG Direct Loss 0.992271159947575 0 NA NA prediction 0.98454231989515 Functional Loss - LVRN ENSG00000172901 UTR5 Human protein_coding chr5:115298172 chr5:115298172 . . 0 21 hm6Am_associated_SNPs_358 0 0 0 1 115298157 115298181 mRNA hsa-miR-184 AQPEP miRanda miRanda
36 chr1 48688376 48688376 1 + A G rs41287916 48688376 + 48688356 48688396 41 AATGAAGCCAGGAGCGCCTCAAAGTCCAGCCTGCTGTTGAC AATGAAGCCAGGAGCGCCTCGAAGTCCAGCCTGCTGTTGAC Direct Loss 0.990846055127727 0 NA NA prediction 0.981692110255453 Functional Loss - SLC5A9 ENSG00000117834 UTR5 Human protein_coding chr1:48688376 chr1:48688376 . . 0 21 hm6Am_associated_SNPs_401 0 0 0 3 48688376 48688400 mRNA hsa-miR-182 SLC5A9 miRanda miRanda
37 chr1 48688376 48688376 1 + A G rs41287916 48688376 + 48688356 48688396 41 AATGAAGCCAGGAGCGCCTCAAAGTCCAGCCTGCTGTTGAC AATGAAGCCAGGAGCGCCTCGAAGTCCAGCCTGCTGTTGAC Direct Loss 0.990846055127727 0 NA NA prediction 0.981692110255453 Functional Loss - SLC5A9 ENSG00000117834 UTR5 Human protein_coding chr1:48688376 chr1:48688376 . . 0 21 hm6Am_associated_SNPs_401 0 0 0 3 48688368 48688392 mRNA hsa-miR-214 SLC5A9 miRanda miRanda
38 chr1 48688376 48688376 1 + A G rs41287916 48688376 + 48688356 48688396 41 AATGAAGCCAGGAGCGCCTCAAAGTCCAGCCTGCTGTTGAC AATGAAGCCAGGAGCGCCTCGAAGTCCAGCCTGCTGTTGAC Direct Loss 0.990846055127727 0 NA NA prediction 0.981692110255453 Functional Loss - SLC5A9 ENSG00000117834 UTR5 Human protein_coding chr1:48688376 chr1:48688376 . . 0 21 hm6Am_associated_SNPs_401 0 0 0 3 48688375 48688397 mRNA hsa-miR-505 SLC5A9 miRanda miRanda
39 chr17 16699409 16699409 1 + C G rs143888506 16699411 + 16699391 16699431 41 GGCGAGCGCAAGTCGAGCCCATCAACCTGGACAGCTGTCTC GGCGAGCGCAAGTCGAGCGCATCAACCTGGACAGCTGTCTC < 41bp 0.827006181759035 0.510590382990065 NA NA prediction 0.63283159753794 Functional Loss - USP32P1 ENSG00000188933;ENSG00000272815 ncRNA_exonic Human other chr17:16699411 chr17:16699409 . . 0 19 hm6Am_associated_SNPs_457 0 0 0 1 16699404 16699427 mRNA hsa-miR-22 LOC162632 miRanda miRanda
40 chr11 17282551 17282551 1 + T G rs188049288 17282553 + 17282533 17282573 41 TTCACCTGCCTCAGCCTCTCAAAGTGCTGGGATTATAGGCG TTCACCTGCCTCAGCCTCGCAAAGTGCTGGGATTATAGGCG < 41bp 0.812335873200534 0.456482323412931 NA NA prediction 0.624671746401067 Functional Loss - PIK3C2A;NUCB2 ENSG00000070081 UTR5 Human protein_coding chr11:17282553 chr11:17282551 . . 0 19 hm6Am_associated_SNPs_480 0 0 0 1 17282530 17282551 mRNA hsa-miR-485-5p NUCB2 miRanda miRanda
41 chr15 25430680 25430680 1 + T G ESCA 25430682 + 25430662 25430702 41 CCTCCCGTGCGCTAAAGCTCAGGTCCTTCCTGTCATCCTGG CCTCCCGTGCGCTAAAGCGCAGGTCCTTCCTGTCATCCTGG < 41bp 0.812014270025993 0.449402183299627 NA NA prediction 0.624028540051985 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25430682 chr15:25430680 . . 0 19 hm6Am_associated_SNPs_482 0 0 0 1 25430669 25430692 mRNA hsa-miR-7 SNRPN miRanda miRanda
42 chr2 27346840 27346840 1 + C G KIRC 27346842 + 27346822 27346862 41 GAGCTCCTTCCTGAGCCCCCAGAATGGCACCTGGGCAGACA GAGCTCCTTCCTGAGCCCGCAGAATGGCACCTGGGCAGACA < 41bp 0.846471414451095 0.534708864114046 NA NA prediction 0.6235251006741 Functional Loss - ABHD1 ENSG00000143994 CDS Human protein_coding chr2:27346842 chr2:27346840 synonymous SNV . 0 19 hm6Am_associated_SNPs_484 0 0 0 1 27346840 27346862 mRNA hsa-miR-346 ABHD1 miRanda miRanda
43 chr7 121943848 121943848 1 + C G HNSC 121943850 + 121943830 121943870 41 AGGTCTTTGAAAGCTACTCCAGAAGGGTATTTCTCCACCGC AGGTCTTTGAAAGCTACTGCAGAAGGGTATTTCTCCACCGC < 41bp 0.822430730710598 0.510813833219515 NA NA prediction 0.623233794982166 Functional Loss - FEZF1 ENSG00000128610 CDS Human protein_coding chr7:121943850 chr7:121943848 nonsynonymous SNV 0.974 1 19 hm6Am_associated_SNPs_485 0 0 0 1 121943843 121943865 mRNA hsa-miR-539 LOC154860 miRanda miRanda
44 chr15 25219558 25219558 1 + T G LUSC 25219560 + 25219540 25219580 41 CCTAGGTCTTCAGAAGCATCAAGTTTTAACTGTGGACATTG CCTAGGTCTTCAGAAGCAGCAAGTTTTAACTGTGGACATTG < 41bp 0.811215233990307 0.49329087791714 NA NA prediction 0.622430467980613 Functional Loss - SNHG14 ENSG00000128739;ENSG00000273173 UTR5;UTR3 Human other chr15:25219560 chr15:25219558 . . 0 19 hm6Am_associated_SNPs_487 0 0 1 2 25219556 25219575 mRNA hsa-miR-27a SNURF miRanda miRanda
45 chr15 25219558 25219558 1 + T G LUSC 25219560 + 25219540 25219580 41 CCTAGGTCTTCAGAAGCATCAAGTTTTAACTGTGGACATTG CCTAGGTCTTCAGAAGCAGCAAGTTTTAACTGTGGACATTG < 41bp 0.811215233990307 0.49329087791714 NA NA prediction 0.622430467980613 Functional Loss - SNHG14 ENSG00000128739;ENSG00000273173 UTR5;UTR3 Human other chr15:25219560 chr15:25219558 . . 0 19 hm6Am_associated_SNPs_487 0 0 1 2 25219556 25219575 mRNA hsa-miR-27b SNURF miRanda miRanda
46 chr1 166974517 166974517 1 + T G ESCA 166974519 + 166974499 166974539 41 GGCAAGATCTACAACTTCTCACTGTAGAGGACCTTGTAGTG GGCAAGATCTACAACTTCGCACTGTAGAGGACCTTGTAGTG < 41bp 0.80957410141689 0.419164188150822 NA NA prediction 0.61914820283378 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166974519 chr1:166974517 nonsynonymous SNV 0.997 0 19 hm6Am_associated_SNPs_498 0 0 0 3 166974507 166974527 mRNA hsa-miR-27a MAEL miRanda miRanda
47 chr1 166974517 166974517 1 + T G ESCA 166974519 + 166974499 166974539 41 GGCAAGATCTACAACTTCTCACTGTAGAGGACCTTGTAGTG GGCAAGATCTACAACTTCGCACTGTAGAGGACCTTGTAGTG < 41bp 0.80957410141689 0.419164188150822 NA NA prediction 0.61914820283378 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166974519 chr1:166974517 nonsynonymous SNV 0.997 0 19 hm6Am_associated_SNPs_498 0 0 0 3 166974503 166974526 mRNA hsa-miR-139-5p MAEL miRanda miRanda
48 chr1 166974517 166974517 1 + T G ESCA 166974519 + 166974499 166974539 41 GGCAAGATCTACAACTTCTCACTGTAGAGGACCTTGTAGTG GGCAAGATCTACAACTTCGCACTGTAGAGGACCTTGTAGTG < 41bp 0.80957410141689 0.419164188150822 NA NA prediction 0.61914820283378 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166974519 chr1:166974517 nonsynonymous SNV 0.997 0 19 hm6Am_associated_SNPs_498 0 0 0 3 166974507 166974527 mRNA hsa-miR-27b MAEL miRanda miRanda
49 chr11 12265624 12265624 1 + C G LUAD 12265626 + 12265606 12265646 41 CCAGCTGCTTCTTCCTCTCCATCAACTGTTGACTCTGCTTC CCAGCTGCTTCTTCCTCTGCATCAACTGTTGACTCTGCTTC < 41bp 0.834002789501943 0.527452953554868 NA NA prediction 0.613099671894149 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12265626 chr11:12265624 nonsynonymous SNV 0.020 0 19 hm6Am_associated_SNPs_517 0 0 0 3 12265603 12265626 mRNA hsa-miR-185 MICAL2 miRanda miRanda
50 chr11 12265624 12265624 1 + C G LUAD 12265626 + 12265606 12265646 41 CCAGCTGCTTCTTCCTCTCCATCAACTGTTGACTCTGCTTC CCAGCTGCTTCTTCCTCTGCATCAACTGTTGACTCTGCTTC < 41bp 0.834002789501943 0.527452953554868 NA NA prediction 0.613099671894149 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12265626 chr11:12265624 nonsynonymous SNV 0.020 0 19 hm6Am_associated_SNPs_517 0 0 0 3 12265618 12265639 mRNA hsa-miR-505 MICAL2 miRanda miRanda
51 chr11 12265624 12265624 1 + C G LUAD 12265626 + 12265606 12265646 41 CCAGCTGCTTCTTCCTCTCCATCAACTGTTGACTCTGCTTC CCAGCTGCTTCTTCCTCTGCATCAACTGTTGACTCTGCTTC < 41bp 0.834002789501943 0.527452953554868 NA NA prediction 0.613099671894149 Functional Loss - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12265626 chr11:12265624 nonsynonymous SNV 0.020 0 19 hm6Am_associated_SNPs_517 0 0 0 3 12265619 12265638 mRNA hsa-miR-421 MICAL2 miRanda miRanda
52 chr6 33080360 33080360 1 + T G rs9348906 33080362 + 33080342 33080382 41 CATTACTGATGGTGCTGCTCATATCTGTGGTCCAGAGCAGG CATTACTGATGGTGCTGCGCATATCTGTGGTCCAGAGCAGG < 41bp 0.850452380824554 0.547988942962542 NA NA prediction 0.604926875724025 Functional Loss - HLA-DPB2 ENSG00000224557 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:33080362 chr6:33080360 . . 0 19 hm6Am_associated_SNPs_542 0 0 0 6 33080337 33080361 mRNA hsa-miR-15a HLA-DPB2 miRanda miRanda
53 chr6 33080360 33080360 1 + T G rs9348906 33080362 + 33080342 33080382 41 CATTACTGATGGTGCTGCTCATATCTGTGGTCCAGAGCAGG CATTACTGATGGTGCTGCGCATATCTGTGGTCCAGAGCAGG < 41bp 0.850452380824554 0.547988942962542 NA NA prediction 0.604926875724025 Functional Loss - HLA-DPB2 ENSG00000224557 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:33080362 chr6:33080360 . . 0 19 hm6Am_associated_SNPs_542 0 0 0 6 33080339 33080361 mRNA hsa-miR-16 HLA-DPB2 miRanda miRanda
54 chr6 33080360 33080360 1 + T G rs9348906 33080362 + 33080342 33080382 41 CATTACTGATGGTGCTGCTCATATCTGTGGTCCAGAGCAGG CATTACTGATGGTGCTGCGCATATCTGTGGTCCAGAGCAGG < 41bp 0.850452380824554 0.547988942962542 NA NA prediction 0.604926875724025 Functional Loss - HLA-DPB2 ENSG00000224557 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:33080362 chr6:33080360 . . 0 19 hm6Am_associated_SNPs_542 0 0 0 6 33080338 33080361 mRNA hsa-miR-15b HLA-DPB2 miRanda miRanda
55 chr6 33080360 33080360 1 + T G rs9348906 33080362 + 33080342 33080382 41 CATTACTGATGGTGCTGCTCATATCTGTGGTCCAGAGCAGG CATTACTGATGGTGCTGCGCATATCTGTGGTCCAGAGCAGG < 41bp 0.850452380824554 0.547988942962542 NA NA prediction 0.604926875724025 Functional Loss - HLA-DPB2 ENSG00000224557 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:33080362 chr6:33080360 . . 0 19 hm6Am_associated_SNPs_542 0 0 0 6 33080340 33080361 mRNA hsa-miR-195 HLA-DPB2 miRanda miRanda
56 chr6 33080360 33080360 1 + T G rs9348906 33080362 + 33080342 33080382 41 CATTACTGATGGTGCTGCTCATATCTGTGGTCCAGAGCAGG CATTACTGATGGTGCTGCGCATATCTGTGGTCCAGAGCAGG < 41bp 0.850452380824554 0.547988942962542 NA NA prediction 0.604926875724025 Functional Loss - HLA-DPB2 ENSG00000224557 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:33080362 chr6:33080360 . . 0 19 hm6Am_associated_SNPs_542 0 0 0 6 33080340 33080361 mRNA hsa-miR-424 HLA-DPB2 miRanda miRanda
57 chr6 33080360 33080360 1 + T G rs9348906 33080362 + 33080342 33080382 41 CATTACTGATGGTGCTGCTCATATCTGTGGTCCAGAGCAGG CATTACTGATGGTGCTGCGCATATCTGTGGTCCAGAGCAGG < 41bp 0.850452380824554 0.547988942962542 NA NA prediction 0.604926875724025 Functional Loss - HLA-DPB2 ENSG00000224557 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:33080362 chr6:33080360 . . 0 19 hm6Am_associated_SNPs_542 0 0 0 6 33080339 33080361 mRNA hsa-miR-497 HLA-DPB2 miRanda miRanda
58 chr7 12610592 12610592 1 + C G UCEC 12610594 + 12610574 12610614 41 GAGCCGAGGCTTCACCTACCACCTGCACTTCTGGCTCGGTA GAGCCGAGGCTTCACCTAGCACCTGCACTTCTGGCTCGGTA < 41bp 0.857073390911 0.562534438151704 NA NA prediction 0.589077905518592 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12610594 chr7:12610592 stopgain 0.892 1 19 hm6Am_associated_SNPs_599 0 0 0 1 12610592 12610611 mRNA hsa-miR-615-3p SCIN miRanda miRanda
59 chr11 9450377 9450377 1 + T G rs2290423 9450379 + 9450359 9450399 41 AGTGTCTGTCTGTGTTTTTCATTCAGATCTTGCTATCCACA AGTGTCTGTCTGTGTTTTGCATTCAGATCTTGCTATCCACA < 41bp 0.791498732039171 0.411125160965124 NA NA prediction 0.582997464078341 Functional Loss - SNORA23 ENSG00000201998 ncRNA_exonic Human snoRNA chr11:9450379 chr11:9450377 . . 0 19 hm6Am_associated_SNPs_617 0 0 1 1 9450375 9450393 mRNA hsa-miR-31 SNORA23 miRanda miRanda
60 chr15 74328212 74328212 1 + C G HNSC 74328214 + 74328194 74328234 41 GTGCCTCTGGAAGCCTCTCCAATTACATTCCCACCACCCTG GTGCCTCTGGAAGCCTCTGCAATTACATTCCCACCACCCTG < 41bp 0.787893725076878 0.491094973978012 NA NA prediction 0.575787450153757 Functional Loss - PML ENSG00000140464 CDS Human protein_coding chr15:74328214 chr15:74328212 nonsynonymous SNV 0.006 1 19 hm6Am_associated_SNPs_636 0 0 1 3 74328204 74328225 mRNA hsa-miR-1 PML miRanda miRanda
61 chr15 74328212 74328212 1 + C G HNSC 74328214 + 74328194 74328234 41 GTGCCTCTGGAAGCCTCTCCAATTACATTCCCACCACCCTG GTGCCTCTGGAAGCCTCTGCAATTACATTCCCACCACCCTG < 41bp 0.787893725076878 0.491094973978012 NA NA prediction 0.575787450153757 Functional Loss - PML ENSG00000140464 CDS Human protein_coding chr15:74328214 chr15:74328212 nonsynonymous SNV 0.006 1 19 hm6Am_associated_SNPs_636 0 0 1 3 74328202 74328225 mRNA hsa-miR-206 PML miRanda miRanda
62 chr15 74328212 74328212 1 + C G HNSC 74328214 + 74328194 74328234 41 GTGCCTCTGGAAGCCTCTCCAATTACATTCCCACCACCCTG GTGCCTCTGGAAGCCTCTGCAATTACATTCCCACCACCCTG < 41bp 0.787893725076878 0.491094973978012 NA NA prediction 0.575787450153757 Functional Loss - PML ENSG00000140464 CDS Human protein_coding chr15:74328214 chr15:74328212 nonsynonymous SNV 0.006 1 19 hm6Am_associated_SNPs_636 0 0 1 3 74328206 74328225 mRNA hsa-miR-613 PML miRanda miRanda
63 chr11 61631454 61631454 1 + T G rs518511 61631456 + 61631436 61631476 41 ATTCCATCTCCCTGAGGGTCATCCTGTGCCCCTCATGCTGT ATTCCATCTCCCTGAGGGGCATCCTGTGCCCCTCATGCTGT < 41bp 0.787462253568071 0.409735812023677 NA NA prediction 0.574924507136143 Functional Loss - FADS2 ENSG00000134824 UTR3 Human protein_coding chr11:61631456 chr11:61631454 . . 0 19 hm6Am_associated_SNPs_639 0 0 1 1 61631441 61631462 mRNA hsa-miR-125a-3p FADS2 miRanda miRanda
64 chr7 47801083 47801083 1 + C G rs34368666 47801085 + 47801065 47801105 41 GATGATCAGTGACGATGACCACCTTTTCATATGCCTGTTTG GATGATCAGTGACGATGAGCACCTTTTCATATGCCTGTTTG < 41bp 0.831047616694965 0.545734224370696 NA NA prediction 0.570626784648538 Functional Loss - LINC00525 ENSG00000146666 ncRNA_exonic Human antisense chr7:47801085 chr7:47801083 . . 0 19 hm6Am_associated_SNPs_648 0 0 0 2 47801074 47801090 mRNA hsa-miR-18a MGC16075 miRanda miRanda
65 chr7 47801083 47801083 1 + C G rs34368666 47801085 + 47801065 47801105 41 GATGATCAGTGACGATGACCACCTTTTCATATGCCTGTTTG GATGATCAGTGACGATGAGCACCTTTTCATATGCCTGTTTG < 41bp 0.831047616694965 0.545734224370696 NA NA prediction 0.570626784648538 Functional Loss - LINC00525 ENSG00000146666 ncRNA_exonic Human antisense chr7:47801085 chr7:47801083 . . 0 19 hm6Am_associated_SNPs_648 0 0 0 2 47801074 47801090 mRNA hsa-miR-18b MGC16075 miRanda miRanda
66 chr14 77797568 77797568 1 + C G rs545108364 77797570 + 77797550 77797590 41 TGCCCCGTTGGCACAGGGCCACAGGAGCAGAAGCTGGGTGG TGCCCCGTTGGCACAGGGGCACAGGAGCAGAAGCTGGGTGG < 41bp 0.772640773446626 0.43830364093991 NA NA prediction 0.545281546893252 Functional Loss - GSTZ1 ENSG00000100577 UTR3 Human protein_coding chr14:77797570 chr14:77797568 . . 0 19 hm6Am_associated_SNPs_712 0 0 1 1 77797552 77797571 mRNA hsa-miR-328 GSTZ1 miRanda miRanda
67 chr21 45937325 45937325 1 + C G rs117958236 45937327 + 45937307 45937347 41 TCATGTGACTGGCACTAGCCAATGAGCTGTGAGGACGTGAG TCATGTGACTGGCACTAGGCAATGAGCTGTGAGGACGTGAG < 41bp 0.850937851303018 0.579256187314387 NA NA prediction 0.543363327977261 Functional Loss - TSPEAR-AS2 ENSG00000182912 UTR5 Human antisense chr21:45937327 chr21:45937325 . . 0 19 hm6Am_associated_SNPs_721 0 0 0 1 45937303 45937327 mRNA hsa-miR-34c-5p C21orf90 miRanda miRanda
68 chr16 706411 706411 1 + C G HNSC 706413 + 706393 706433 41 CACGCTGTCCCGGGTGTACCACATGCTGGCTCGCTCCCACA CACGCTGTCCCGGGTGTAGCACATGCTGGCTCGCTCCCACA < 41bp 0.765012609645053 0.424762429202386 NA NA prediction 0.530025219290106 Functional Loss - WDR90 ENSG00000161996 CDS Human protein_coding chr16:706413 chr16:706411 stopgain 0.013 0 19 hm6Am_associated_SNPs_760 0 0 1 1 706403 706422 mRNA hsa-miR-338-3p WDR90 miRanda miRanda
69 chr2 14775633 14775633 1 + C G COAD 14775635 + 14775615 14775655 41 TCCAGGCTGCGGGCTAAGCCAGACAGTGTTTGCCTCCGGTT TCCAGGCTGCGGGCTAAGGCAGACAGTGTTTGCCTCCGGTT < 41bp 0.760240548239345 0.41250301248259 NA NA prediction 0.520481096478691 Functional Loss - FAM84A ENSG00000265629 CDS Human other chr2:14775635 chr2:14775633 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_785 0 0 0 2 14775624 14775645 mRNA hsa-miR-141 FAM84A miRanda miRanda
70 chr2 14775633 14775633 1 + C G COAD 14775635 + 14775615 14775655 41 TCCAGGCTGCGGGCTAAGCCAGACAGTGTTTGCCTCCGGTT TCCAGGCTGCGGGCTAAGGCAGACAGTGTTTGCCTCCGGTT < 41bp 0.760240548239345 0.41250301248259 NA NA prediction 0.520481096478691 Functional Loss - FAM84A ENSG00000265629 CDS Human other chr2:14775635 chr2:14775633 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_785 0 0 0 2 14775624 14775645 mRNA hsa-miR-200a FAM84A miRanda miRanda
71 chr19 58698326 58698326 1 + C G LUSC 58698328 + 58698308 58698348 41 GAGCAGAACATCAGCTTTCCAAACCAGATGTGGTATCTCAG GAGCAGAACATCAGCTTTGCAAACCAGATGTGGTATCTCAG < 41bp 0.759399022041054 0.470847292345689 NA NA prediction 0.518798044082109 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58698328 chr19:58698326 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_789 0 0 1 4 58698314 58698326 mRNA hsa-miR-320a ZNF274 miRanda miRanda
72 chr19 58698326 58698326 1 + C G LUSC 58698328 + 58698308 58698348 41 GAGCAGAACATCAGCTTTCCAAACCAGATGTGGTATCTCAG GAGCAGAACATCAGCTTTGCAAACCAGATGTGGTATCTCAG < 41bp 0.759399022041054 0.470847292345689 NA NA prediction 0.518798044082109 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58698328 chr19:58698326 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_789 0 0 1 4 58698314 58698326 mRNA hsa-miR-320b ZNF274 miRanda miRanda
73 chr19 58698326 58698326 1 + C G LUSC 58698328 + 58698308 58698348 41 GAGCAGAACATCAGCTTTCCAAACCAGATGTGGTATCTCAG GAGCAGAACATCAGCTTTGCAAACCAGATGTGGTATCTCAG < 41bp 0.759399022041054 0.470847292345689 NA NA prediction 0.518798044082109 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58698328 chr19:58698326 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_789 0 0 1 4 58698314 58698326 mRNA hsa-miR-320c ZNF274 miRanda miRanda
74 chr19 58698326 58698326 1 + C G LUSC 58698328 + 58698308 58698348 41 GAGCAGAACATCAGCTTTCCAAACCAGATGTGGTATCTCAG GAGCAGAACATCAGCTTTGCAAACCAGATGTGGTATCTCAG < 41bp 0.759399022041054 0.470847292345689 NA NA prediction 0.518798044082109 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58698328 chr19:58698326 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_789 0 0 1 4 58698314 58698326 mRNA hsa-miR-320d ZNF274 miRanda miRanda
75 chr6 66498455 66498455 1 + C G rs114131239 66498457 + 66498437 66498477 41 ACATCGCAATCACATATCCCATTCAGACGGTCCTCTTTCGA ACATCGCAATCACATATCGCATTCAGACGGTCCTCTTTCGA < 41bp 0.757700717276826 0.422602938053047 NA NA prediction 0.515401434553651 Functional Loss - SLC25A51P1 ENSG00000220483 ncRNA_exonic Human processed_pseudogene chr6:66498457 chr6:66498455 . . 0 19 hm6Am_associated_SNPs_802 0 0 0 2 66498432 66498455 mRNA hsa-miR-190 MCART3P miRanda miRanda
76 chr6 66498455 66498455 1 + C G rs114131239 66498457 + 66498437 66498477 41 ACATCGCAATCACATATCCCATTCAGACGGTCCTCTTTCGA ACATCGCAATCACATATCGCATTCAGACGGTCCTCTTTCGA < 41bp 0.757700717276826 0.422602938053047 NA NA prediction 0.515401434553651 Functional Loss - SLC25A51P1 ENSG00000220483 ncRNA_exonic Human processed_pseudogene chr6:66498457 chr6:66498455 . . 0 19 hm6Am_associated_SNPs_802 0 0 0 2 66498431 66498455 mRNA hsa-miR-190b MCART3P miRanda miRanda
77 chr7 86802916 86802916 1 + C G BLCA 86802918 + 86802898 86802938 41 GGAAGTTTCAGCAGTTAGCCAAGCATGGTTTACAACTAAAG GGAAGTTTCAGCAGTTAGGCAAGCATGGTTTACAACTAAAG < 41bp 0.770633437389654 0.513514379726344 NA NA prediction 0.51423811532662 Functional Loss - DMTF1 ENSG00000135164 CDS Human protein_coding chr7:86802918 chr7:86802916 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_809 0 0 1 2 86802909 86802931 mRNA hsa-miR-30a DMTF1 miRanda miRanda
78 chr7 86802916 86802916 1 + C G BLCA 86802918 + 86802898 86802938 41 GGAAGTTTCAGCAGTTAGCCAAGCATGGTTTACAACTAAAG GGAAGTTTCAGCAGTTAGGCAAGCATGGTTTACAACTAAAG < 41bp 0.770633437389654 0.513514379726344 NA NA prediction 0.51423811532662 Functional Loss - DMTF1 ENSG00000135164 CDS Human protein_coding chr7:86802918 chr7:86802916 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_809 0 0 1 2 86802909 86802931 mRNA hsa-miR-30e DMTF1 miRanda miRanda
79 chr16 69358392 69358392 1 + C G rs562193676 69358394 + 69358374 69358414 41 TGCAGCCACAGAGACACTCCACTGCCCTGGGGCACACAGTG TGCAGCCACAGAGACACTGCACTGCCCTGGGGCACACAGTG < 41bp 0.74952412523401 0.404481847583359 NA NA prediction 0.499048250468021 Functional Loss - VPS4A ENSG00000132612 UTR3 Human protein_coding chr16:69358394 chr16:69358392 . . 0 19 hm6Am_associated_SNPs_851 0 0 1 1 69358372 69358394 mRNA hsa-miR-122 VPS4A miRanda miRanda
80 chr4 174506472 174506472 1 + T G rs575608663 174506474 + 174506454 174506494 41 CCCAGGTTCAAGTGATTCTCATGCCTCAGCCTCCTGAGTAG CCCAGGTTCAAGTGATTCGCATGCCTCAGCCTCCTGAGTAG < 41bp 0.893341614111974 0.644836810173625 NA NA prediction 0.497009607876698 Functional Loss - HAND2-AS1 ENSG00000237125 ncRNA_exonic Human antisense chr4:174506474 chr4:174506472 . . 0 19 hm6Am_associated_SNPs_855 0 0 0 1 174506466 174506487 mRNA hsa-miR-485-5p NBLA00301 miRanda miRanda
81 chr7 128355554 128355554 1 + T G UCEC 128355556 + 128355536 128355576 41 CAAAGAAGACAGTAAAAGTCACAAGATCCTATCCAACCTTC CAAAGAAGACAGTAAAAGGCACAAGATCCTATCCAACCTTC < 41bp 0.746102978097618 0.335251606639812 NA NA prediction 0.492205956195235 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128355556 chr7:128355554 nonsynonymous SNV 0.999 3 19 hm6Am_associated_SNPs_871 0 0 0 2 128355537 128355558 mRNA hsa-miR-134 FAM71F1 miRanda miRanda
82 chr7 128355554 128355554 1 + T G UCEC 128355556 + 128355536 128355576 41 CAAAGAAGACAGTAAAAGTCACAAGATCCTATCCAACCTTC CAAAGAAGACAGTAAAAGGCACAAGATCCTATCCAACCTTC < 41bp 0.746102978097618 0.335251606639812 NA NA prediction 0.492205956195235 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128355556 chr7:128355554 nonsynonymous SNV 0.999 3 19 hm6Am_associated_SNPs_871 0 0 0 2 128355539 128355560 mRNA hsa-miR-758 FAM71F1 miRanda miRanda
83 chr21 30968801 30968801 1 + C G rs201283754 30968803 + 30968783 30968823 41 CCTTTCCAATGACATTCCCCATCCCACCCCCAGGTTTCCTG CCTTTCCAATGACATTCCGCATCCCACCCCCAGGTTTCCTG < 41bp 0.743188239293662 0.397523357002676 NA NA prediction 0.486376478587323 Functional Loss - GRIK1-AS2 ENSG00000183653 UTR3 Human other chr21:30968803 chr21:30968801 . . 0 19 hm6Am_associated_SNPs_889 0 0 0 4 30968776 30968801 mRNA hsa-miR-1 C21orf41 miRanda miRanda
84 chr21 30968801 30968801 1 + C G rs201283754 30968803 + 30968783 30968823 41 CCTTTCCAATGACATTCCCCATCCCACCCCCAGGTTTCCTG CCTTTCCAATGACATTCCGCATCCCACCCCCAGGTTTCCTG < 41bp 0.743188239293662 0.397523357002676 NA NA prediction 0.486376478587323 Functional Loss - GRIK1-AS2 ENSG00000183653 UTR3 Human other chr21:30968803 chr21:30968801 . . 0 19 hm6Am_associated_SNPs_889 0 0 0 4 30968778 30968801 mRNA hsa-miR-206 C21orf41 miRanda miRanda
85 chr21 30968801 30968801 1 + C G rs201283754 30968803 + 30968783 30968823 41 CCTTTCCAATGACATTCCCCATCCCACCCCCAGGTTTCCTG CCTTTCCAATGACATTCCGCATCCCACCCCCAGGTTTCCTG < 41bp 0.743188239293662 0.397523357002676 NA NA prediction 0.486376478587323 Functional Loss - GRIK1-AS2 ENSG00000183653 UTR3 Human other chr21:30968803 chr21:30968801 . . 0 19 hm6Am_associated_SNPs_889 0 0 0 4 30968798 30968819 mRNA hsa-miR-490-3p C21orf41 miRanda miRanda
86 chr21 30968801 30968801 1 + C G rs201283754 30968803 + 30968783 30968823 41 CCTTTCCAATGACATTCCCCATCCCACCCCCAGGTTTCCTG CCTTTCCAATGACATTCCGCATCCCACCCCCAGGTTTCCTG < 41bp 0.743188239293662 0.397523357002676 NA NA prediction 0.486376478587323 Functional Loss - GRIK1-AS2 ENSG00000183653 UTR3 Human other chr21:30968803 chr21:30968801 . . 0 19 hm6Am_associated_SNPs_889 0 0 0 4 30968783 30968801 mRNA hsa-miR-613 C21orf41 miRanda miRanda
87 chr5 111496834 111496834 1 + C G rs146721641 111496836 + 111496816 111496856 41 ACTATGCCAGGGAGTTCTCCAGATAAGCCTGGTTTTATTTT ACTATGCCAGGGAGTTCTGCAGATAAGCCTGGTTTTATTTT < 41bp 0.740137963442253 0.416237356907353 NA NA prediction 0.480275926884506 Functional Loss - EPB41L4A-AS1 ENSG00000224032 ncRNA_exonic Human lincRNA chr5:111496836 chr5:111496834 . . 0 19 hm6Am_associated_SNPs_910 0 0 1 4 111496814 111496835 lncRNA hsa-miR-146a-5p EPB41L4A-AS1 miRanda starBase2
88 chr5 111496834 111496834 1 + C G rs146721641 111496836 + 111496816 111496856 41 ACTATGCCAGGGAGTTCTCCAGATAAGCCTGGTTTTATTTT ACTATGCCAGGGAGTTCTGCAGATAAGCCTGGTTTTATTTT < 41bp 0.740137963442253 0.416237356907353 NA NA prediction 0.480275926884506 Functional Loss - EPB41L4A-AS1 ENSG00000224032 ncRNA_exonic Human lincRNA chr5:111496836 chr5:111496834 . . 0 19 hm6Am_associated_SNPs_910 0 0 1 4 111496814 111496835 lncRNA hsa-miR-146b-5p EPB41L4A-AS1 miRanda starBase2
89 chr5 111496834 111496834 1 + C G rs146721641 111496836 + 111496816 111496856 41 ACTATGCCAGGGAGTTCTCCAGATAAGCCTGGTTTTATTTT ACTATGCCAGGGAGTTCTGCAGATAAGCCTGGTTTTATTTT < 41bp 0.740137963442253 0.416237356907353 NA NA prediction 0.480275926884506 Functional Loss - EPB41L4A-AS1 ENSG00000224032 ncRNA_exonic Human lincRNA chr5:111496836 chr5:111496834 . . 0 19 hm6Am_associated_SNPs_910 0 0 1 4 111496813 111496835 lncRNA hsa-miR-7153-5p EPB41L4A-AS1 miRanda starBase2
90 chr5 111496834 111496834 1 + C G rs146721641 111496836 + 111496816 111496856 41 ACTATGCCAGGGAGTTCTCCAGATAAGCCTGGTTTTATTTT ACTATGCCAGGGAGTTCTGCAGATAAGCCTGGTTTTATTTT < 41bp 0.740137963442253 0.416237356907353 NA NA prediction 0.480275926884506 Functional Loss - EPB41L4A-AS1 ENSG00000224032 ncRNA_exonic Human lincRNA chr5:111496836 chr5:111496834 . . 0 19 hm6Am_associated_SNPs_910 0 0 1 4 111496818 111496839 lncRNA hsa-miR-516b-5p EPB41L4A-AS1 miRanda starBase2
91 chr2 220366735 220366735 1 + C G OV 220366734 + 220366714 220366754 41 AGCCCACCGACGCCAGCGTCACCCTTTCTTACTCCTTGGCA AGCCCACCGACGCCAGCGTCAGCCTTTCTTACTCCTTGGCA < 41bp 0.778076579382058 0.538006433386888 NA NA prediction 0.48014029199034 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220366734 chr2:220366735 nonsynonymous SNV 0.969 0 22 hm6Am_associated_SNPs_911 0 0 0 1 220366732 220366757 mRNA hsa-miR-130b GMPPA miRanda miRanda
92 chr8 99441667 99441667 1 + C G rs115056651 99441669 + 99441649 99441689 41 GACTTGTCACCCTCCACCCCACATTGCTGAGCTGCCTCTTG GACTTGTCACCCTCCACCGCACATTGCTGAGCTGCCTCTTG < 41bp 0.739999134223961 0.386686740416203 NA NA prediction 0.479998268447923 Functional Loss - KCNS2 ENSG00000156486 UTR3 Human protein_coding chr8:99441669 chr8:99441667 . . 0 19 hm6Am_associated_SNPs_913 0 0 0 3 99441663 99441686 mRNA hsa-miR-28-5p KCNS2 miRanda miRanda
93 chr8 99441667 99441667 1 + C G rs115056651 99441669 + 99441649 99441689 41 GACTTGTCACCCTCCACCCCACATTGCTGAGCTGCCTCTTG GACTTGTCACCCTCCACCGCACATTGCTGAGCTGCCTCTTG < 41bp 0.739999134223961 0.386686740416203 NA NA prediction 0.479998268447923 Functional Loss - KCNS2 ENSG00000156486 UTR3 Human protein_coding chr8:99441669 chr8:99441667 . . 0 19 hm6Am_associated_SNPs_913 0 0 0 3 99441652 99441673 mRNA hsa-miR-299-3p KCNS2 miRanda miRanda
94 chr8 99441667 99441667 1 + C G rs115056651 99441669 + 99441649 99441689 41 GACTTGTCACCCTCCACCCCACATTGCTGAGCTGCCTCTTG GACTTGTCACCCTCCACCGCACATTGCTGAGCTGCCTCTTG < 41bp 0.739999134223961 0.386686740416203 NA NA prediction 0.479998268447923 Functional Loss - KCNS2 ENSG00000156486 UTR3 Human protein_coding chr8:99441669 chr8:99441667 . . 0 19 hm6Am_associated_SNPs_913 0 0 0 3 99441662 99441686 mRNA hsa-miR-708 KCNS2 miRanda miRanda
95 chr2 232672932 232672932 1 + C G rs1246014 232672931 + 232672911 232672951 41 GGGCTGTGTTTACTAAACCCACGGGTTTTCAGCCTCTTAAG GGGCTGTGTTTACTAAACCCAGGGGTTTTCAGCCTCTTAAG < 41bp 0.738343175287399 0.504169526469151 NA NA prediction 0.468347297636496 Functional Loss - COPS7B ENSG00000144524 UTR3 Human protein_coding chr2:232672931 chr2:232672932 . . 0 22 hm6Am_associated_SNPs_967 0 0 1 1 232672922 232672947 mRNA hsa-miR-485-5p COPS7B miRanda miRanda
96 chr19 22786190 22786190 1 + C G rs59866454 22786192 + 22786172 22786212 41 CCCCTGCATTCTGTTTTCCCACCAGGCTGACAAAAACCACC CCCCTGCATTCTGTTTTCGCACCAGGCTGACAAAAACCACC < 41bp 0.733561046525978 0.393992390134524 NA NA prediction 0.467122093051956 Functional Loss - GOLGA2P9 ENSG00000268823;ENSG00000269332 ncRNA_exonic Human other chr19:22786192 chr19:22786190 . . 0 19 hm6Am_associated_SNPs_975 0 0 0 1 22786187 22786208 mRNA hsa-miR-129-5p LOC440518 miRanda miRanda
97 chr17 28992285 28992285 1 + T G rs55716522 28992287 + 28992267 28992307 41 GATTACAGGCACAAGCCATCATGACTGGCTTCCTCTTTTTT GATTACAGGCACAAGCCAGCATGACTGGCTTCCTCTTTTTT < 41bp 0.72927048112619 0.343024537883046 NA NA prediction 0.45854096225238 Functional Loss - LOC107133515;SUZ12P1 ENSG00000214719 ncRNA_intronic Human processed_transcript chr17:28992287 chr17:28992285 . . 0 19 hm6Am_associated_SNPs_1003 0 0 0 1 28992273 28992295 mRNA hsa-miR-338-3p LRRC37B2 miRanda miRanda
98 chr20 34136726 34136726 1 + C G rs185938562 34136728 + 34136708 34136748 41 TCTTGGGCAACCATTTGGCCAGAGCAGGCCTTCATCTCAGG TCTTGGGCAACCATTTGGGCAGAGCAGGCCTTCATCTCAGG < 41bp 0.728846886735831 0.37911718069984 NA NA prediction 0.457693773471662 Functional Loss - ERGIC3 ENSG00000125991 intronic Human protein_coding chr20:34136728 chr20:34136726 . . 0 19 hm6Am_associated_SNPs_1009 0 0 1 1 34136726 34136746 mRNA hsa-miR-143 ERGIC3 miRanda miRanda
99 chrX 152960687 152960687 1 + C G rs782159926 152960686 + 152960666 152960706 41 GTGACAACTCAGCTCACATCACCAGCTCACCTCTGGTAGCC GTGACAACTCAGCTCACATCAGCAGCTCACCTCTGGTAGCC < 41bp 0.791317011757554 0.564660190136152 NA NA prediction 0.453313643242804 Functional Loss - SLC6A8 ENSG00000130821 UTR3 Human protein_coding chrX:152960686 chrX:152960687 . . 0 22 hm6Am_associated_SNPs_1024 0 0 1 3 152960676 152960699 mRNA hsa-let-7a SLC6A8 miRanda miRanda
100 chrX 152960687 152960687 1 + C G rs782159926 152960686 + 152960666 152960706 41 GTGACAACTCAGCTCACATCACCAGCTCACCTCTGGTAGCC GTGACAACTCAGCTCACATCAGCAGCTCACCTCTGGTAGCC < 41bp 0.791317011757554 0.564660190136152 NA NA prediction 0.453313643242804 Functional Loss - SLC6A8 ENSG00000130821 UTR3 Human protein_coding chrX:152960686 chrX:152960687 . . 0 22 hm6Am_associated_SNPs_1024 0 0 1 3 152960677 152960699 mRNA hsa-let-7b SLC6A8 miRanda miRanda
101 chrX 152960687 152960687 1 + C G rs782159926 152960686 + 152960666 152960706 41 GTGACAACTCAGCTCACATCACCAGCTCACCTCTGGTAGCC GTGACAACTCAGCTCACATCAGCAGCTCACCTCTGGTAGCC < 41bp 0.791317011757554 0.564660190136152 NA NA prediction 0.453313643242804 Functional Loss - SLC6A8 ENSG00000130821 UTR3 Human protein_coding chrX:152960686 chrX:152960687 . . 0 22 hm6Am_associated_SNPs_1024 0 0 1 3 152960677 152960699 mRNA hsa-let-7c SLC6A8 miRanda miRanda
102 chr6 54214623 54214623 1 + C G rs149997439 54214625 + 54214605 54214645 41 AAACGGCATGCCACGAAGCCATGTCCCAACAACGTAGAAAA AAACGGCATGCCACGAAGGCATGTCCCAACAACGTAGAAAA < 41bp 0.723056359509085 0.365176291032891 NA NA prediction 0.44611271901817 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54214625 chr6:54214623 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1059 0 0 0 2 54214602 54214627 mRNA hsa-miR-135a TINAG miRanda miRanda
103 chr6 54214623 54214623 1 + C G rs149997439 54214625 + 54214605 54214645 41 AAACGGCATGCCACGAAGCCATGTCCCAACAACGTAGAAAA AAACGGCATGCCACGAAGGCATGTCCCAACAACGTAGAAAA < 41bp 0.723056359509085 0.365176291032891 NA NA prediction 0.44611271901817 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54214625 chr6:54214623 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_1059 0 0 0 2 54214602 54214627 mRNA hsa-miR-135b TINAG miRanda miRanda
104 chr5 135287201 135287201 1 + T G rs2073615 135287203 + 135287183 135287223 41 GGGATGTCCCAGGATGCCTCACTCTGTTTAGCCCAATTTTA GGGATGTCCCAGGATGCCGCACTCTGTTTAGCCCAATTTTA < 41bp 0.717682204690225 0.340794676801947 NA NA prediction 0.43536440938045 Functional Loss - LECT2 ENSG00000145826 intronic Human protein_coding chr5:135287203 chr5:135287201 . . 0 19 hm6Am_associated_SNPs_1110 0 0 0 1 135287186 135287209 mRNA hsa-miR-125a-3p FBXL21 miRanda miRanda
105 chr21 48084820 48084820 1 + C G rs7116 48084822 + 48084802 48084842 41 AATAAATTATGTGTTGGTCCATCGCACATGCTCAATAAATA AATAAATTATGTGTTGGTGCATCGCACATGCTCAATAAATA < 41bp 0.715542730652409 0.381812897394382 NA NA prediction 0.431085461304818 Functional Loss - PRMT2 ENSG00000160310 UTR3 Human protein_coding chr21:48084822 chr21:48084820 . . 0 19 hm6Am_associated_SNPs_1126 0 0 1 2 48084808 48084830 mRNA hsa-miR-210 PRMT2 miRanda miRanda
106 chr21 48084820 48084820 1 + C G rs7116 48084822 + 48084802 48084842 41 AATAAATTATGTGTTGGTCCATCGCACATGCTCAATAAATA AATAAATTATGTGTTGGTGCATCGCACATGCTCAATAAATA < 41bp 0.715542730652409 0.381812897394382 NA NA prediction 0.431085461304818 Functional Loss - PRMT2 ENSG00000160310 UTR3 Human protein_coding chr21:48084822 chr21:48084820 . . 0 19 hm6Am_associated_SNPs_1126 0 0 1 2 48084810 48084831 mRNA hsa-miR-455-5p PRMT2 miRanda miRanda
107 chr3 9959033 9959033 1 + C G rs7643547 9959032 + 9959012 9959052 41 TGGTTCTTGCTGTCCTTGGCACTGGGCCGAAGCCCAGTGGT TGGTTCTTGCTGTCCTTGGCAGTGGGCCGAAGCCCAGTGGT < 41bp 0.725976368647608 0.51245827208598 NA NA prediction 0.427036193123254 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9959032 chr3:9959033 nonsynonymous SNV 0.996 4 22 hm6Am_associated_SNPs_1134 0 0 1 1 9959032 9959054 mRNA hsa-miR-504 IL17RC miRanda miRanda
108 chr19 10663997 10663997 1 + C G rs77956256 10663996 + 10663976 10664016 41 CCCCCCTCAGGGCCTGACTCACGTACTGTAGTTTGCACTGG CCCCCCTCAGGGCCTGACTCAGGTACTGTAGTTTGCACTGG < 41bp 0.726506588157766 0.517349105644164 NA NA prediction 0.418314965027204 Functional Loss - ATG4D;KRI1 ENSG00000129347;ENSG00000130734 UTR3 Human other chr19:10663996 chr19:10663997 . . 0 22 hm6Am_associated_SNPs_1180 0 0 1 12 10663993 10664014 mRNA hsa-miR-19a ATG4D miRanda miRanda
109 chr19 10663997 10663997 1 + C G rs77956256 10663996 + 10663976 10664016 41 CCCCCCTCAGGGCCTGACTCACGTACTGTAGTTTGCACTGG CCCCCCTCAGGGCCTGACTCAGGTACTGTAGTTTGCACTGG < 41bp 0.726506588157766 0.517349105644164 NA NA prediction 0.418314965027204 Functional Loss - ATG4D;KRI1 ENSG00000129347;ENSG00000130734 UTR3 Human other chr19:10663996 chr19:10663997 . . 0 22 hm6Am_associated_SNPs_1180 0 0 1 12 10663990 10664014 mRNA hsa-miR-19b ATG4D miRanda miRanda
110 chr19 10663997 10663997 1 + C G rs77956256 10663996 + 10663976 10664016 41 CCCCCCTCAGGGCCTGACTCACGTACTGTAGTTTGCACTGG CCCCCCTCAGGGCCTGACTCAGGTACTGTAGTTTGCACTGG < 41bp 0.726506588157766 0.517349105644164 NA NA prediction 0.418314965027204 Functional Loss - ATG4D;KRI1 ENSG00000129347;ENSG00000130734 UTR3 Human other chr19:10663996 chr19:10663997 . . 0 22 hm6Am_associated_SNPs_1180 0 0 1 12 10663986 10664005 mRNA hsa-miR-101 ATG4D miRanda miRanda
111 chr19 10663997 10663997 1 + C G rs77956256 10663996 + 10663976 10664016 41 CCCCCCTCAGGGCCTGACTCACGTACTGTAGTTTGCACTGG CCCCCCTCAGGGCCTGACTCAGGTACTGTAGTTTGCACTGG < 41bp 0.726506588157766 0.517349105644164 NA NA prediction 0.418314965027204 Functional Loss - ATG4D;KRI1 ENSG00000129347;ENSG00000130734 UTR3 Human other chr19:10663996 chr19:10663997 . . 0 22 hm6Am_associated_SNPs_1180 0 0 1 12 10663993 10664016 mRNA hsa-miR-148a ATG4D miRanda miRanda
112 chr19 10663997 10663997 1 + C G rs77956256 10663996 + 10663976 10664016 41 CCCCCCTCAGGGCCTGACTCACGTACTGTAGTTTGCACTGG CCCCCCTCAGGGCCTGACTCAGGTACTGTAGTTTGCACTGG < 41bp 0.726506588157766 0.517349105644164 NA NA prediction 0.418314965027204 Functional Loss - ATG4D;KRI1 ENSG00000129347;ENSG00000130734 UTR3 Human other chr19:10663996 chr19:10663997 . . 0 22 hm6Am_associated_SNPs_1180 0 0 1 12 10663986 10664007 mRNA hsa-miR-139-5p ATG4D miRanda miRanda
113 chr19 10663997 10663997 1 + C G rs77956256 10663996 + 10663976 10664016 41 CCCCCCTCAGGGCCTGACTCACGTACTGTAGTTTGCACTGG CCCCCCTCAGGGCCTGACTCAGGTACTGTAGTTTGCACTGG < 41bp 0.726506588157766 0.517349105644164 NA NA prediction 0.418314965027204 Functional Loss - ATG4D;KRI1 ENSG00000129347;ENSG00000130734 UTR3 Human other chr19:10663996 chr19:10663997 . . 0 22 hm6Am_associated_SNPs_1180 0 0 1 12 10663995 10664015 mRNA hsa-miR-130a ATG4D miRanda miRanda
114 chr19 10663997 10663997 1 + C G rs77956256 10663996 + 10663976 10664016 41 CCCCCCTCAGGGCCTGACTCACGTACTGTAGTTTGCACTGG CCCCCCTCAGGGCCTGACTCAGGTACTGTAGTTTGCACTGG < 41bp 0.726506588157766 0.517349105644164 NA NA prediction 0.418314965027204 Functional Loss - ATG4D;KRI1 ENSG00000129347;ENSG00000130734 UTR3 Human other chr19:10663996 chr19:10663997 . . 0 22 hm6Am_associated_SNPs_1180 0 0 1 12 10663994 10664016 mRNA hsa-miR-152 ATG4D miRanda miRanda
115 chr19 10663997 10663997 1 + C G rs77956256 10663996 + 10663976 10664016 41 CCCCCCTCAGGGCCTGACTCACGTACTGTAGTTTGCACTGG CCCCCCTCAGGGCCTGACTCAGGTACTGTAGTTTGCACTGG < 41bp 0.726506588157766 0.517349105644164 NA NA prediction 0.418314965027204 Functional Loss - ATG4D;KRI1 ENSG00000129347;ENSG00000130734 UTR3 Human other chr19:10663996 chr19:10663997 . . 0 22 hm6Am_associated_SNPs_1180 0 0 1 12 10663994 10664015 mRNA hsa-miR-301a ATG4D miRanda miRanda
116 chr19 10663997 10663997 1 + C G rs77956256 10663996 + 10663976 10664016 41 CCCCCCTCAGGGCCTGACTCACGTACTGTAGTTTGCACTGG CCCCCCTCAGGGCCTGACTCAGGTACTGTAGTTTGCACTGG < 41bp 0.726506588157766 0.517349105644164 NA NA prediction 0.418314965027204 Functional Loss - ATG4D;KRI1 ENSG00000129347;ENSG00000130734 UTR3 Human other chr19:10663996 chr19:10663997 . . 0 22 hm6Am_associated_SNPs_1180 0 0 1 12 10663996 10664015 mRNA hsa-miR-130b ATG4D miRanda miRanda
117 chr19 10663997 10663997 1 + C G rs77956256 10663996 + 10663976 10664016 41 CCCCCCTCAGGGCCTGACTCACGTACTGTAGTTTGCACTGG CCCCCCTCAGGGCCTGACTCAGGTACTGTAGTTTGCACTGG < 41bp 0.726506588157766 0.517349105644164 NA NA prediction 0.418314965027204 Functional Loss - ATG4D;KRI1 ENSG00000129347;ENSG00000130734 UTR3 Human other chr19:10663996 chr19:10663997 . . 0 22 hm6Am_associated_SNPs_1180 0 0 1 12 10663993 10664016 mRNA hsa-miR-148b ATG4D miRanda miRanda
118 chr19 10663997 10663997 1 + C G rs77956256 10663996 + 10663976 10664016 41 CCCCCCTCAGGGCCTGACTCACGTACTGTAGTTTGCACTGG CCCCCCTCAGGGCCTGACTCAGGTACTGTAGTTTGCACTGG < 41bp 0.726506588157766 0.517349105644164 NA NA prediction 0.418314965027204 Functional Loss - ATG4D;KRI1 ENSG00000129347;ENSG00000130734 UTR3 Human other chr19:10663996 chr19:10663997 . . 0 22 hm6Am_associated_SNPs_1180 0 0 1 12 10663994 10664015 mRNA hsa-miR-454 ATG4D miRanda miRanda
119 chr19 10663997 10663997 1 + C G rs77956256 10663996 + 10663976 10664016 41 CCCCCCTCAGGGCCTGACTCACGTACTGTAGTTTGCACTGG CCCCCCTCAGGGCCTGACTCAGGTACTGTAGTTTGCACTGG < 41bp 0.726506588157766 0.517349105644164 NA NA prediction 0.418314965027204 Functional Loss - ATG4D;KRI1 ENSG00000129347;ENSG00000130734 UTR3 Human other chr19:10663996 chr19:10663997 . . 0 22 hm6Am_associated_SNPs_1180 0 0 1 12 10663994 10664015 mRNA hsa-miR-301b ATG4D miRanda miRanda
120 chr1 3833450 3833450 1 + T G rs371067316 3833448 + 3833428 3833468 41 AGGGGCTCACGGACATTGGCACTCTAAGTCAGAGATGCTCA AGGGGCTCACGGACATTGGCACGCTAAGTCAGAGATGCTCA < 41bp 0.716777441864432 0.510281462468527 NA NA prediction 0.412991958791809 Functional Loss - LINC01134;LINC01346 ENSG00000236423 ncRNA_exonic Human lincRNA chr1:3833448 chr1:3833450 . . 0 23 hm6Am_associated_SNPs_1215 0 0 0 1 3833429 3833451 mRNA hsa-miR-130a LOC100133612 miRanda miRanda
121 chr17 15621350 15621350 1 + C G rs546355593 15621352 + 15621332 15621372 41 CCACCTCCCAGGTTCATGCCATTCTCTTGTCTCAGCCTCCC CCACCTCCCAGGTTCATGGCATTCTCTTGTCTCAGCCTCCC < 41bp 0.706367728043153 0.356619949589553 NA NA prediction 0.412735456086306 Functional Loss - ZNF286A ENSG00000187607 UTR3 Human protein_coding chr17:15621352 chr17:15621350 . . 0 19 hm6Am_associated_SNPs_1218 0 0 0 1 15621350 15621371 mRNA hsa-miR-485-5p ZNF286A miRanda miRanda
122 chrX 155255156 155255156 1 + C G ACC 155255155 + 155255135 155255175 41 GAGGGGGTGACGGAACCAGCACTGTGTGGAGACCAGCTTCA GAGGGGGTGACGGAACCAGCAGTGTGTGGAGACCAGCTTCA < 41bp 0.766980090977725 0.562999150261054 NA NA prediction 0.407961881433341 Functional Loss - DDX11L16 ENSG00000182484;ENSG00000270726 ncRNA_exonic Human other chrX:155255155 chrX:155255156 . . 0 22 hm6Am_associated_SNPs_1249 0 0 0 1 155255143 155255161 mRNA hsa-miR-128 WASH6P miRanda miRanda
123 chr1 197887048 197887048 1 + G T OV 197887050 + 197887030 197887070 41 CCGGAGGCCACATCCAAGGCATCATGGAGGAGATGGAGCGC CCGGAGGCCACATCCAAGTCATCATGGAGGAGATGGAGCGC < 41bp 0.493210215676936 0.855095619438532 NA NA prediction 0.710191238877063 Functional Gain - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197887050 chr1:197887048 nonsynonymous SNV 0.999 4 19 hm6Am_associated_SNPs_1316 0 0 0 1 197887034 197887055 mRNA hsa-miR-455-5p LHX9 miRanda miRanda
124 chr10 21845734 21845734 1 + G T UCEC 21845736 + 21845716 21845756 41 TGGGCTTGTCTTACTACAGCAGCTTTCTTCGGTCCTCAGTC TGGGCTTGTCTTACTACATCAGCTTTCTTCGGTCCTCAGTC < 41bp 0.464142359583784 0.819027819657717 NA NA prediction 0.638055639315434 Functional Gain - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:21845736 chr10:21845734 nonsynonymous SNV 0.008 1 19 hm6Am_associated_SNPs_1494 0 0 1 7 21845717 21845742 mRNA hsa-miR-20a MLLT10 miRanda miRanda
125 chr10 21845734 21845734 1 + G T UCEC 21845736 + 21845716 21845756 41 TGGGCTTGTCTTACTACAGCAGCTTTCTTCGGTCCTCAGTC TGGGCTTGTCTTACTACATCAGCTTTCTTCGGTCCTCAGTC < 41bp 0.464142359583784 0.819027819657717 NA NA prediction 0.638055639315434 Functional Gain - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:21845736 chr10:21845734 nonsynonymous SNV 0.008 1 19 hm6Am_associated_SNPs_1494 0 0 1 7 21845717 21845742 mRNA hsa-miR-93 MLLT10 miRanda miRanda
126 chr10 21845734 21845734 1 + G T UCEC 21845736 + 21845716 21845756 41 TGGGCTTGTCTTACTACAGCAGCTTTCTTCGGTCCTCAGTC TGGGCTTGTCTTACTACATCAGCTTTCTTCGGTCCTCAGTC < 41bp 0.464142359583784 0.819027819657717 NA NA prediction 0.638055639315434 Functional Gain - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:21845736 chr10:21845734 nonsynonymous SNV 0.008 1 19 hm6Am_associated_SNPs_1494 0 0 1 7 21845720 21845742 mRNA hsa-miR-320a MLLT10 miRanda miRanda
127 chr10 21845734 21845734 1 + G T UCEC 21845736 + 21845716 21845756 41 TGGGCTTGTCTTACTACAGCAGCTTTCTTCGGTCCTCAGTC TGGGCTTGTCTTACTACATCAGCTTTCTTCGGTCCTCAGTC < 41bp 0.464142359583784 0.819027819657717 NA NA prediction 0.638055639315434 Functional Gain - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:21845736 chr10:21845734 nonsynonymous SNV 0.008 1 19 hm6Am_associated_SNPs_1494 0 0 1 7 21845721 21845742 mRNA hsa-miR-20b MLLT10 miRanda miRanda
128 chr10 21845734 21845734 1 + G T UCEC 21845736 + 21845716 21845756 41 TGGGCTTGTCTTACTACAGCAGCTTTCTTCGGTCCTCAGTC TGGGCTTGTCTTACTACATCAGCTTTCTTCGGTCCTCAGTC < 41bp 0.464142359583784 0.819027819657717 NA NA prediction 0.638055639315434 Functional Gain - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:21845736 chr10:21845734 nonsynonymous SNV 0.008 1 19 hm6Am_associated_SNPs_1494 0 0 1 7 21845720 21845742 mRNA hsa-miR-320b MLLT10 miRanda miRanda
129 chr10 21845734 21845734 1 + G T UCEC 21845736 + 21845716 21845756 41 TGGGCTTGTCTTACTACAGCAGCTTTCTTCGGTCCTCAGTC TGGGCTTGTCTTACTACATCAGCTTTCTTCGGTCCTCAGTC < 41bp 0.464142359583784 0.819027819657717 NA NA prediction 0.638055639315434 Functional Gain - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:21845736 chr10:21845734 nonsynonymous SNV 0.008 1 19 hm6Am_associated_SNPs_1494 0 0 1 7 21845722 21845742 mRNA hsa-miR-320c MLLT10 miRanda miRanda
130 chr10 21845734 21845734 1 + G T UCEC 21845736 + 21845716 21845756 41 TGGGCTTGTCTTACTACAGCAGCTTTCTTCGGTCCTCAGTC TGGGCTTGTCTTACTACATCAGCTTTCTTCGGTCCTCAGTC < 41bp 0.464142359583784 0.819027819657717 NA NA prediction 0.638055639315434 Functional Gain - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:21845736 chr10:21845734 nonsynonymous SNV 0.008 1 19 hm6Am_associated_SNPs_1494 0 0 1 7 21845723 21845742 mRNA hsa-miR-320d MLLT10 miRanda miRanda
131 chr11 64889822 64889822 1 + G C LIHC 64889824 + 64889804 64889844 41 GCGTAGCAGGTAAAGATGGCAGCTACCATGTTCCGGGCTAC GCGTAGCAGGTAAAGATGCCAGCTACCATGTTCCGGGCTAC < 41bp 0.51371904952301 0.832594379573514 NA NA prediction 0.637750660101009 Functional Gain - MRPL49 ENSG00000149792 CDS Human protein_coding chr11:64889824 chr11:64889822 nonsynonymous SNV 0.541 3 19 hm6Am_associated_SNPs_1498 0 0 1 1 64889807 64889828 mRNA hsa-miR-22 MRPL49 miRanda miRanda
132 chrX 619922 619922 1 + G C rs28645282 619924 + 619904 619944 41 TCAAACTCCTGGGCTCAAGCAATCCTCCCACCTCAGCCTCC TCAAACTCCTGGGCTCAACCAATCCTCCCACCTCAGCCTCC < 41bp 0.509476774137955 0.827310194875043 NA NA prediction 0.635666841474175 Functional Gain - SHOX ENSG00000185960 UTR3 Human protein_coding chrX:619924 chrX:619922 . . 0 19 hm6Am_associated_SNPs_1508 0 0 0 1 619922 619944 mRNA hsa-miR-485-5p SHOX miRanda miRanda
133 chr21 33765972 33765972 1 + G T rs543968865 33765974 + 33765954 33765994 41 CCTCCACCCCAGACTTCCGCAAACTGATGGGCTCTTTGCGC CCTCCACCCCAGACTTCCTCAAACTGATGGGCTCTTTGCGC < 41bp 0.555811928705432 0.864088580419439 NA NA prediction 0.616553303428013 Functional Gain - URB1-AS1 ENSG00000256073 UTR3 Human lincRNA chr21:33765974 chr21:33765972 . . 0 19 hm6Am_associated_SNPs_1582 0 0 1 1 33765972 33765991 lncRNA hsa-miR-1276 URB1-AS1 miRanda starBase2
134 chr20 43545460 43545460 1 + G T LUSC 43545462 + 43545442 43545482 41 TTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACACCAT TTTGAGACCCATGAGGCCTCACAGCAGGCCATCAACACCAT < 41bp 0.581088697440562 0.888358890052226 NA NA prediction 0.614540385223328 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545462 chr20:43545460 nonsynonymous SNV 0.062 4 19 hm6Am_associated_SNPs_1590 0 0 1 1 43545452 43545470 mRNA hsa-miR-370 PABPC1L miRanda miRanda
135 chr14 76668066 76668066 1 + G T OV 76668068 + 76668048 76668088 41 GTGGAGCCAACCACACCAGCATCACAAGCCCCCAAATCACC GTGGAGCCAACCACACCATCATCACAAGCCCCCAAATCACC < 41bp 0.406915024219043 0.805042481249409 NA NA prediction 0.610084962498817 Functional Gain - GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76668068 chr14:76668066 nonsynonymous SNV 0.284 0 19 hm6Am_associated_SNPs_1610 0 0 1 1 76668046 76668068 mRNA hsa-miR-138 C14orf118 miRanda miRanda
136 chr8 23429253 23429253 1 + G T GBM 23429255 + 23429235 23429275 41 TGGCCGGCTACTTCAAAGGCATCCAGGCGCGTGTCATCTAC TGGCCGGCTACTTCAAAGTCATCCAGGCGCGTGTCATCTAC < 41bp 0.598510123913521 0.898612054030791 NA NA prediction 0.60020386023454 Functional Gain - SLC25A37 ENSG00000147454 CDS Human protein_coding chr8:23429255 chr8:23429253 nonsynonymous SNV 0.982 4 19 hm6Am_associated_SNPs_1649 0 0 0 1 23429250 23429272 mRNA hsa-miR-425 SLC25A37 miRanda miRanda
137 chr2 232659000 232659000 1 + G T SARC 232659002 + 232658982 232659022 41 AGAGCCTGCCAGAACTGAGCACAGCTCAGCAGAACAAGCTG AGAGCCTGCCAGAACTGATCACAGCTCAGCAGAACAAGCTG < 41bp 0.396294776201269 0.798376205442448 NA NA prediction 0.596752410884895 Functional Gain - COPS7B ENSG00000144524 CDS Human protein_coding chr2:232659002 chr2:232659000 nonsynonymous SNV 0.988 1 19 hm6Am_associated_SNPs_1662 0 0 1 1 232658997 232659019 mRNA hsa-miR-375 COPS7B miRanda miRanda
138 chr6 50683257 50683257 1 + G T LUAD 50683259 + 50683239 50683279 41 TGGCTCTCAGTATGGAATGCACCCAGATCAAAGACTCCTGC TGGCTCTCAGTATGGAATTCACCCAGATCAAAGACTCCTGC < 41bp 0.395373798115418 0.798244355237278 NA NA prediction 0.596488710474555 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683259 chr6:50683257 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_1663 0 0 0 1 50683256 50683278 mRNA hsa-miR-708 TFAP2D miRanda miRanda
139 chr1 201489289 201489289 1 + G C LAML 201489291 + 201489271 201489311 41 CCTAAGCACCCGGAGCTGGCAGACAAGAATGCGCCCAACCT CCTAAGCACCCGGAGCTGCCAGACAAGAATGCGCCCAACCT < 41bp 0.538310904583973 0.832260367320016 NA NA prediction 0.587898925472085 Functional Gain - RPS10P7 ENSG00000223396;ENSG00000242150 ncRNA_exonic Human other chr1:201489291 chr1:201489289 . . 0 19 hm6Am_associated_SNPs_1693 0 0 1 1 201489272 201489295 mRNA hsa-miR-346 RPS10P7 miRanda miRanda
140 chr11 36614556 36614556 1 + G C LUSC 36614558 + 36614538 36614578 41 TCAAAACTATTTGCTTCTGCACTGAAACAAAATTCTTCAGA TCAAAACTATTTGCTTCTCCACTGAAACAAAATTCTTCAGA < 41bp 0.553467116699235 0.846869736768466 NA NA prediction 0.586805240138464 Functional Gain - RAG2 ENSG00000175097 CDS Human protein_coding chr11:36614558 chr11:36614556 nonsynonymous SNV 0.990 3 19 hm6Am_associated_SNPs_1699 0 0 0 3 36614539 36614562 mRNA hsa-miR-148a RAG1 miRanda miRanda
141 chr11 36614556 36614556 1 + G C LUSC 36614558 + 36614538 36614578 41 TCAAAACTATTTGCTTCTGCACTGAAACAAAATTCTTCAGA TCAAAACTATTTGCTTCTCCACTGAAACAAAATTCTTCAGA < 41bp 0.553467116699235 0.846869736768466 NA NA prediction 0.586805240138464 Functional Gain - RAG2 ENSG00000175097 CDS Human protein_coding chr11:36614558 chr11:36614556 nonsynonymous SNV 0.990 3 19 hm6Am_associated_SNPs_1699 0 0 0 3 36614540 36614562 mRNA hsa-miR-152 RAG1 miRanda miRanda
142 chr11 36614556 36614556 1 + G C LUSC 36614558 + 36614538 36614578 41 TCAAAACTATTTGCTTCTGCACTGAAACAAAATTCTTCAGA TCAAAACTATTTGCTTCTCCACTGAAACAAAATTCTTCAGA < 41bp 0.553467116699235 0.846869736768466 NA NA prediction 0.586805240138464 Functional Gain - RAG2 ENSG00000175097 CDS Human protein_coding chr11:36614558 chr11:36614556 nonsynonymous SNV 0.990 3 19 hm6Am_associated_SNPs_1699 0 0 0 3 36614539 36614562 mRNA hsa-miR-148b RAG1 miRanda miRanda
143 chr12 95228734 95228734 1 + G T LIHC 95228736 + 95228716 95228756 41 ACACTGGCAGAAACAGAGGCATGCTTTGGAGCCCAGCTGGT ACACTGGCAGAAACAGAGTCATGCTTTGGAGCCCAGCTGGT < 41bp 0.417444787423263 0.792966183052681 NA NA prediction 0.585932366105363 Functional Gain - KRT19P2 ENSG00000216306 ncRNA_exonic Human transcribed_processed_pseudogene chr12:95228736 chr12:95228734 . . 0 19 hm6Am_associated_SNPs_1705 0 0 0 1 95228729 95228752 mRNA hsa-miR-149 KRT19P2 miRanda miRanda
144 chr8 146221028 146221028 1 + G C rs190018532 146221030 + 146221010 146221050 41 ACCAGCAGCACCATCAAGGCATGTAGGAGCTTTCTTGCCAG ACCAGCAGCACCATCAAGCCATGTAGGAGCTTTCTTGCCAG < 41bp 0.453298224012141 0.785922490497521 NA NA prediction 0.571844980995041 Functional Gain - TMED10P1 ENSG00000196922 ncRNA_exonic Human transcribed_unitary_pseudogene chr8:146221030 chr8:146221028 . . 0 19 hm6Am_associated_SNPs_1748 0 0 0 1 146221028 146221049 mRNA hsa-miR-31 TMED10P1 miRanda miRanda
145 chr2 33661454 33661454 1 + G T rs141122092 33661456 + 33661436 33661476 41 CTTCAATGTTGTTGTTAGGCATAAACAGCTTGCAAATTTCA CTTCAATGTTGTTGTTAGTCATAAACAGCTTGCAAATTTCA < 41bp 0.609897407105659 0.892608923454111 NA NA prediction 0.565423032696905 Functional Gain - RASGRP3 ENSG00000152689 UTR5 Human protein_coding chr2:33661456 chr2:33661454 . . 0 19 hm6Am_associated_SNPs_1770 0 0 0 4 33661448 33661468 mRNA hsa-miR-320a RASGRP3 miRanda miRanda
146 chr2 33661454 33661454 1 + G T rs141122092 33661456 + 33661436 33661476 41 CTTCAATGTTGTTGTTAGGCATAAACAGCTTGCAAATTTCA CTTCAATGTTGTTGTTAGTCATAAACAGCTTGCAAATTTCA < 41bp 0.609897407105659 0.892608923454111 NA NA prediction 0.565423032696905 Functional Gain - RASGRP3 ENSG00000152689 UTR5 Human protein_coding chr2:33661456 chr2:33661454 . . 0 19 hm6Am_associated_SNPs_1770 0 0 0 4 33661448 33661468 mRNA hsa-miR-320b RASGRP3 miRanda miRanda
147 chr2 33661454 33661454 1 + G T rs141122092 33661456 + 33661436 33661476 41 CTTCAATGTTGTTGTTAGGCATAAACAGCTTGCAAATTTCA CTTCAATGTTGTTGTTAGTCATAAACAGCTTGCAAATTTCA < 41bp 0.609897407105659 0.892608923454111 NA NA prediction 0.565423032696905 Functional Gain - RASGRP3 ENSG00000152689 UTR5 Human protein_coding chr2:33661456 chr2:33661454 . . 0 19 hm6Am_associated_SNPs_1770 0 0 0 4 33661450 33661468 mRNA hsa-miR-320c RASGRP3 miRanda miRanda
148 chr2 33661454 33661454 1 + G T rs141122092 33661456 + 33661436 33661476 41 CTTCAATGTTGTTGTTAGGCATAAACAGCTTGCAAATTTCA CTTCAATGTTGTTGTTAGTCATAAACAGCTTGCAAATTTCA < 41bp 0.609897407105659 0.892608923454111 NA NA prediction 0.565423032696905 Functional Gain - RASGRP3 ENSG00000152689 UTR5 Human protein_coding chr2:33661456 chr2:33661454 . . 0 19 hm6Am_associated_SNPs_1770 0 0 0 4 33661451 33661468 mRNA hsa-miR-320d RASGRP3 miRanda miRanda
149 chrX 47583142 47583142 1 + G T LUSC 47583144 + 47583124 47583164 41 GGATTACTAGGCGAGAGGGCATTGGCGAGGTAGAGCTTAAA GGATTACTAGGCGAGAGGTCATTGGCGAGGTAGAGCTTAAA < 41bp 0.359843375219045 0.780536535186115 NA NA prediction 0.561073070372229 Functional Gain - CXXC1P1 ENSG00000187893 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:47583144 chrX:47583142 . . 0 19 hm6Am_associated_SNPs_1779 0 0 0 1 47583120 47583147 mRNA hsa-miR-365 NCRNA00236 miRanda miRanda
150 chr13 77502887 77502887 1 + G T SARC 77502889 + 77502869 77502909 41 CAATCTGTGGGTGGAAAAGCACCACTTGCTACTGGAGAGGA CAATCTGTGGGTGGAAAATCACCACTTGCTACTGGAGAGGA < 41bp 0.40849483823553 0.779460274835375 NA NA prediction 0.55892054967075 Functional Gain - BTF3P11 ENSG00000118903 ncRNA_exonic Human processed_pseudogene chr13:77502889 chr13:77502887 . . 0 19 hm6Am_associated_SNPs_1791 0 0 0 1 77502878 77502902 mRNA hsa-miR-454 BTF3L1 miRanda miRanda
151 chr7 151664412 151664412 1 + G T COAD 151664414 + 151664394 151664434 41 TCTGTTATTCATATATTTGCACCATAATCATGTGAGCAGCT TCTGTTATTCATATATTTTCACCATAATCATGTGAGCAGCT < 41bp 0.373438351302771 0.777371069183096 NA NA prediction 0.554742138366191 Functional Gain - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151664414 chr7:151664412 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_1810 0 0 0 7 151664394 151664416 mRNA hsa-miR-19a GALNTL5 miRanda miRanda
152 chr7 151664412 151664412 1 + G T COAD 151664414 + 151664394 151664434 41 TCTGTTATTCATATATTTGCACCATAATCATGTGAGCAGCT TCTGTTATTCATATATTTTCACCATAATCATGTGAGCAGCT < 41bp 0.373438351302771 0.777371069183096 NA NA prediction 0.554742138366191 Functional Gain - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151664414 chr7:151664412 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_1810 0 0 0 7 151664394 151664416 mRNA hsa-miR-19b GALNTL5 miRanda miRanda
153 chr7 151664412 151664412 1 + G T COAD 151664414 + 151664394 151664434 41 TCTGTTATTCATATATTTGCACCATAATCATGTGAGCAGCT TCTGTTATTCATATATTTTCACCATAATCATGTGAGCAGCT < 41bp 0.373438351302771 0.777371069183096 NA NA prediction 0.554742138366191 Functional Gain - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151664414 chr7:151664412 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_1810 0 0 0 7 151664390 151664417 mRNA hsa-miR-130a GALNTL5 miRanda miRanda
154 chr7 151664412 151664412 1 + G T COAD 151664414 + 151664394 151664434 41 TCTGTTATTCATATATTTGCACCATAATCATGTGAGCAGCT TCTGTTATTCATATATTTTCACCATAATCATGTGAGCAGCT < 41bp 0.373438351302771 0.777371069183096 NA NA prediction 0.554742138366191 Functional Gain - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151664414 chr7:151664412 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_1810 0 0 0 7 151664395 151664417 mRNA hsa-miR-301a GALNTL5 miRanda miRanda
155 chr7 151664412 151664412 1 + G T COAD 151664414 + 151664394 151664434 41 TCTGTTATTCATATATTTGCACCATAATCATGTGAGCAGCT TCTGTTATTCATATATTTTCACCATAATCATGTGAGCAGCT < 41bp 0.373438351302771 0.777371069183096 NA NA prediction 0.554742138366191 Functional Gain - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151664414 chr7:151664412 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_1810 0 0 0 7 151664394 151664417 mRNA hsa-miR-130b GALNTL5 miRanda miRanda
156 chr7 151664412 151664412 1 + G T COAD 151664414 + 151664394 151664434 41 TCTGTTATTCATATATTTGCACCATAATCATGTGAGCAGCT TCTGTTATTCATATATTTTCACCATAATCATGTGAGCAGCT < 41bp 0.373438351302771 0.777371069183096 NA NA prediction 0.554742138366191 Functional Gain - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151664414 chr7:151664412 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_1810 0 0 0 7 151664392 151664417 mRNA hsa-miR-454 GALNTL5 miRanda miRanda
157 chr7 151664412 151664412 1 + G T COAD 151664414 + 151664394 151664434 41 TCTGTTATTCATATATTTGCACCATAATCATGTGAGCAGCT TCTGTTATTCATATATTTTCACCATAATCATGTGAGCAGCT < 41bp 0.373438351302771 0.777371069183096 NA NA prediction 0.554742138366191 Functional Gain - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151664414 chr7:151664412 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_1810 0 0 0 7 151664395 151664417 mRNA hsa-miR-301b GALNTL5 miRanda miRanda
158 chr17 6350861 6350861 1 + G T COAD 6350863 + 6350843 6350883 41 AGGAGGCGGAAGAGAGGAGCACAGAAGGGCAGTGGATCCCC AGGAGGCGGAAGAGAGGATCACAGAAGGGCAGTGGATCCCC < 41bp 0.358402923837495 0.774125996402165 NA NA prediction 0.548251992804329 Functional Gain - PIMREG ENSG00000129195 CDS Human protein_coding chr17:6350863 chr17:6350861 nonsynonymous SNV 0.004 0 19 hm6Am_associated_SNPs_1836 0 0 0 1 6350845 6350867 mRNA hsa-miR-149 FAM64A miRanda miRanda
159 chr1 3390503 3390503 1 + G C rs567896181 3390505 + 3390485 3390525 41 GCTCAGAGAGGCTCACCAGCATGGGCTGTGTGTGTGGGATG GCTCAGAGAGGCTCACCACCATGGGCTGTGTGTGTGGGATG < 41bp 0.444909358790811 0.773267217751479 NA NA prediction 0.546534435502959 Functional Gain - ARHGEF16 ENSG00000130762 intronic Human protein_coding chr1:3390505 chr1:3390503 . . 0 19 hm6Am_associated_SNPs_1841 0 0 0 1 3390483 3390505 mRNA hsa-miR-138 ARHGEF16 miRanda miRanda
160 chr22 35804507 35804507 1 + G T HNSC 35804509 + 35804489 35804529 41 CTGCAGGAGCTGCCTGATGCAGTCCCCCACGGGGAGATGCC CTGCAGGAGCTGCCTGATTCAGTCCCCCACGGGGAGATGCC < 41bp 0.646374272618206 0.919084372569957 NA NA prediction 0.545420199903501 Functional Gain - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35804509 chr22:35804507 nonsynonymous SNV 0.980 1 19 hm6Am_associated_SNPs_1847 0 0 1 1 35804490 35804512 mRNA hsa-miR-217 MCM5 miRanda miRanda
161 chr1 205831470 205831470 1 + G T rs72752905 205831472 + 205831452 205831492 41 AGGCATTCCCCTTTCTATGCACTCATATGAGAGCACATACT AGGCATTCCCCTTTCTATTCACTCATATGAGAGCACATACT < 41bp 0.394325145922566 0.771044258674133 NA NA prediction 0.542088517348265 Functional Gain - LOC284581 ENSG00000162877;ENSG00000174502 intergenic Human other chr1:205831472 chr1:205831470 . . 0 19 hm6Am_associated_SNPs_1857 0 0 1 1 205831452 205831473 mRNA hsa-miR-153 LOC284581 miRanda miRanda
162 chr20 56993350 56993350 1 + G T CESC 56993352 + 56993332 56993372 41 TTTAAGGTGAAGACTACAGCACCACGTAGGTACTGTGTGAG TTTAAGGTGAAGACTACATCACCACGTAGGTACTGTGTGAG < 41bp 0.355734535903955 0.768499481982231 NA NA prediction 0.536998963964462 Functional Gain - VAPB ENSG00000124164 CDS Human protein_coding chr20:56993352 chr20:56993350 nonsynonymous SNV 0.987 3 19 hm6Am_associated_SNPs_1884 0 0 1 1 56993346 56993368 mRNA hsa-miR-101 VAPB miRanda miRanda
163 chr20 30497691 30497691 1 + G C OV 30497693 + 30497673 30497713 41 TGTTTGTAGAGGAGTTTCGCAAAAACCCAGGAATCACCTGG TGTTTGTAGAGGAGTTTCCCAAAAACCCAGGAATCACCTGG < 41bp 0.425036066361428 0.767347533569987 NA NA prediction 0.534695067139974 Functional Gain - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30497693 chr20:30497691 nonsynonymous SNV 0.998 3 19 hm6Am_associated_SNPs_1900 0 0 0 2 30497678 30497698 mRNA hsa-miR-129-5p TTLL9 miRanda miRanda
164 chr20 30497691 30497691 1 + G C OV 30497693 + 30497673 30497713 41 TGTTTGTAGAGGAGTTTCGCAAAAACCCAGGAATCACCTGG TGTTTGTAGAGGAGTTTCCCAAAAACCCAGGAATCACCTGG < 41bp 0.425036066361428 0.767347533569987 NA NA prediction 0.534695067139974 Functional Gain - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30497693 chr20:30497691 nonsynonymous SNV 0.998 3 19 hm6Am_associated_SNPs_1900 0 0 0 2 30497675 30497696 mRNA hsa-miR-450a TTLL9 miRanda miRanda
165 chr2 239141157 239141157 1 + G T rs115643647 239141159 + 239141139 239141179 41 CCAATGCCGAACCCAAGCGCAATAGCAATAGACAGCAAGAA CCAATGCCGAACCCAAGCTCAATAGCAATAGACAGCAAGAA < 41bp 0.380259681771265 0.76477048829702 NA NA prediction 0.52954097659404 Functional Gain - LOC643387 ENSG00000225057 ncRNA_exonic Human processed_transcript chr2:239141159 chr2:239141157 . . 0 19 hm6Am_associated_SNPs_1925 0 0 0 2 239141147 239141169 mRNA hsa-miR-137 LOC643387 miRanda miRanda
166 chr2 239141157 239141157 1 + G T rs115643647 239141159 + 239141139 239141179 41 CCAATGCCGAACCCAAGCGCAATAGCAATAGACAGCAAGAA CCAATGCCGAACCCAAGCTCAATAGCAATAGACAGCAAGAA < 41bp 0.380259681771265 0.76477048829702 NA NA prediction 0.52954097659404 Functional Gain - LOC643387 ENSG00000225057 ncRNA_exonic Human processed_transcript chr2:239141159 chr2:239141157 . . 0 19 hm6Am_associated_SNPs_1925 0 0 0 2 239141146 239141166 mRNA hsa-miR-33b LOC643387 miRanda miRanda
167 chr2 132276080 132276080 1 + G T COAD 132276082 + 132276062 132276102 41 CTCCTGCCTTCTAGGTGAGCAGCTATTCCTGGAGCCAGAGC CTCCTGCCTTCTAGGTGATCAGCTATTCCTGGAGCCAGAGC < 41bp 0.352302770397659 0.761869699375853 NA NA prediction 0.523739398751707 Functional Gain - LOC150776 ENSG00000152117 ncRNA_exonic Human transcribed_processed_pseudogene chr2:132276082 chr2:132276080 . . 0 19 hm6Am_associated_SNPs_1951 0 0 1 1 132276078 132276100 mRNA hsa-miR-149 LOC150776 miRanda miRanda
168 chr6 49518784 49518784 1 + G T rs372275351 49518786 + 49518766 49518806 41 GAAAGTGCTCTTTCTCCTGCACCCAGAGAGGTGGTTAGGGA GAAAGTGCTCTTTCTCCTTCACCCAGAGAGGTGGTTAGGGA < 41bp 0.338992354664042 0.754522269467147 NA NA prediction 0.509044538934295 Functional Gain - C6orf141 ENSG00000197261 CDS Human protein_coding chr6:49518786 chr6:49518784 synonymous SNV . 0 19 hm6Am_associated_SNPs_2008 0 0 0 2 49518773 49518794 mRNA hsa-miR-330-5p C6orf141 miRanda miRanda
169 chr6 49518784 49518784 1 + G T rs372275351 49518786 + 49518766 49518806 41 GAAAGTGCTCTTTCTCCTGCACCCAGAGAGGTGGTTAGGGA GAAAGTGCTCTTTCTCCTTCACCCAGAGAGGTGGTTAGGGA < 41bp 0.338992354664042 0.754522269467147 NA NA prediction 0.509044538934295 Functional Gain - C6orf141 ENSG00000197261 CDS Human protein_coding chr6:49518786 chr6:49518784 synonymous SNV . 0 19 hm6Am_associated_SNPs_2008 0 0 0 2 49518775 49518794 mRNA hsa-miR-326 C6orf141 miRanda miRanda
170 chr5 74848405 74848405 1 + G T UCEC 74848407 + 74848387 74848427 41 AGCCAACAGCTAAGAAAAGCACAATTACAGGTATTAATTAA AGCCAACAGCTAAGAAAATCACAATTACAGGTATTAATTAA < 41bp 0.459720609968228 0.7537129806249 NA NA prediction 0.5074259612498 Functional Gain - POLK ENSG00000122008 CDS Human protein_coding chr5:74848407 chr5:74848405 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2018 0 0 1 1 74848391 74848410 mRNA hsa-miR-218 POLK miRanda miRanda
171 chr17 1946027 1946027 1 + G T UCEC 1946029 + 1946009 1946049 41 CTGGGGATGGTGGCACAGGCACTGAACAGGCTGGGGCCTTT CTGGGGATGGTGGCACAGTCACTGAACAGGCTGGGGCCTTT < 41bp 0.345323243691864 0.753213085908467 NA NA prediction 0.506426171816934 Functional Gain - OVCA2 ENSG00000262664 CDS Human protein_coding chr17:1946029 chr17:1946027 nonsynonymous SNV 0.496 2 19 hm6Am_associated_SNPs_2023 0 0 1 1 1946021 1946043 mRNA hsa-miR-199a-5p DPH1 miRanda miRanda
172 chr11 1619306 1619306 1 + G A STAD 1619308 + 1619288 1619328 41 GCTTGCAGCAGCAGACAGGCACATAACATCTGGAGCCACAT GCTTGCAGCAGCAGACAGACACATAACATCTGGAGCCACAT < 41bp 0.501133670182096 0.753242172731074 NA NA prediction 0.504217005097957 Functional Gain - KRTAP5-2 ENSG00000205867 CDS Human protein_coding chr11:1619308 chr11:1619306 nonsynonymous SNV 0.028 0 19 hm6Am_associated_SNPs_2039 0 0 0 1 1619291 1619312 mRNA hsa-miR-455-5p LOC338651 miRanda miRanda
173 chrX 74494346 74494346 1 + G T UCEC 74494348 + 74494328 74494368 41 GTGGTAGTGGTGACAGTAGCAGCTATGACGCACCAGCTGGC GTGGTAGTGGTGACAGTATCAGCTATGACGCACCAGCTGGC < 41bp 0.328092279554968 0.749147892288619 NA NA prediction 0.498295784577237 Functional Gain - UPRT ENSG00000094841 CDS Human protein_coding chrX:74494348 chrX:74494346 nonsynonymous SNV 0.265 1 19 hm6Am_associated_SNPs_2095 0 0 1 1 74494344 74494365 mRNA hsa-miR-138 UPRT miRanda miRanda
174 chr4 515003 515003 1 + G T COAD 515005 + 514985 515025 41 CTGAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACAT CTGAGCTTGTCCCTGAGTTCACAAGTGGCCCAGTACGACAT < 41bp 0.338656996481371 0.747637554498123 NA NA prediction 0.495275108996247 Functional Gain - PIGG ENSG00000174227 CDS Human protein_coding chr4:515005 chr4:515003 nonsynonymous SNV 0.972 0 19 hm6Am_associated_SNPs_2150 0 0 1 3 515002 515016 mRNA hsa-miR-146a PIGG miRanda miRanda
175 chr4 515003 515003 1 + G T COAD 515005 + 514985 515025 41 CTGAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACAT CTGAGCTTGTCCCTGAGTTCACAAGTGGCCCAGTACGACAT < 41bp 0.338656996481371 0.747637554498123 NA NA prediction 0.495275108996247 Functional Gain - PIGG ENSG00000174227 CDS Human protein_coding chr4:515005 chr4:515003 nonsynonymous SNV 0.972 0 19 hm6Am_associated_SNPs_2150 0 0 1 3 515002 515016 mRNA hsa-miR-146b-5p PIGG miRanda miRanda
176 chr4 515003 515003 1 + G T COAD 515005 + 514985 515025 41 CTGAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACAT CTGAGCTTGTCCCTGAGTTCACAAGTGGCCCAGTACGACAT < 41bp 0.338656996481371 0.747637554498123 NA NA prediction 0.495275108996247 Functional Gain - PIGG ENSG00000174227 CDS Human protein_coding chr4:515005 chr4:515003 nonsynonymous SNV 0.972 0 19 hm6Am_associated_SNPs_2150 0 0 1 3 514984 515009 mRNA hsa-miR-1271 PIGG miRanda miRanda
177 chr19 3204579 3204579 1 + G A UCEC 3204581 + 3204561 3204601 41 CCGGCTGCAGGTGGCCGCGCACCAGTTCCCTGAGGTACGGT CCGGCTGCAGGTGGCCGCACACCAGTTCCCTGAGGTACGGT < 41bp 0.521287560476597 0.764955221342575 NA NA prediction 0.487335321731958 Functional Gain - NCLN ENSG00000125912 CDS Human protein_coding chr19:3204581 chr19:3204579 synonymous SNV . 0 19 hm6Am_associated_SNPs_2296 0 0 1 1 3204572 3204593 mRNA hsa-miR-873 NCLN miRanda miRanda
178 chr3 157296161 157296161 1 + G A rs187905437 157296163 + 157296143 157296183 41 CTTGGTGTGGTTTTAAAGGCACCAGCTGCTACGTGTCACAA CTTGGTGTGGTTTTAAAGACACCAGCTGCTACGTGTCACAA < 41bp 0.496879990174685 0.743621719727004 NA NA prediction 0.487243439454007 Functional Gain - PQLC2L ENSG00000174899 UTR3 Human protein_coding chr3:157296163 chr3:157296161 . . 0 19 hm6Am_associated_SNPs_2297 0 0 0 1 157296145 157296169 mRNA hsa-miR-138 C3orf55 miRanda miRanda
179 chr22 42177763 42177763 1 + G A LIHC 42177765 + 42177745 42177785 41 GCCCTCACCTTGGCAAAGGCAGATTCTCCCAGGACTGCACT GCCCTCACCTTGGCAAAGACAGATTCTCCCAGGACTGCACT < 41bp 0.497619640244436 0.742649902277816 NA NA prediction 0.485299804555632 Functional Gain - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42177765 chr22:42177763 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_2335 0 0 0 2 42177749 42177773 mRNA hsa-miR-146a MEI1 miRanda miRanda
180 chr22 42177763 42177763 1 + G A LIHC 42177765 + 42177745 42177785 41 GCCCTCACCTTGGCAAAGGCAGATTCTCCCAGGACTGCACT GCCCTCACCTTGGCAAAGACAGATTCTCCCAGGACTGCACT < 41bp 0.497619640244436 0.742649902277816 NA NA prediction 0.485299804555632 Functional Gain - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42177765 chr22:42177763 nonsynonymous SNV 0.001 0 19 hm6Am_associated_SNPs_2335 0 0 0 2 42177750 42177773 mRNA hsa-miR-146b-5p MEI1 miRanda miRanda
181 chr14 31494743 31494743 1 + G A rs59721419 31494745 + 31494725 31494765 41 CAAGAGGAACAAACAAGAGCAAACTCAGTGTTGAGAGGCCC CAAGAGGAACAAACAAGAACAAACTCAGTGTTGAGAGGCCC < 41bp 0.505801584261973 0.748257637970469 NA NA prediction 0.484912107416991 Functional Gain - AP4S1 ENSG00000100478 UTR5 Human protein_coding chr14:31494745 chr14:31494743 . . 0 19 hm6Am_associated_SNPs_2344 0 0 0 2 31494734 31494757 mRNA hsa-miR-141 AP4S1 miRanda miRanda
182 chr14 31494743 31494743 1 + G A rs59721419 31494745 + 31494725 31494765 41 CAAGAGGAACAAACAAGAGCAAACTCAGTGTTGAGAGGCCC CAAGAGGAACAAACAAGAACAAACTCAGTGTTGAGAGGCCC < 41bp 0.505801584261973 0.748257637970469 NA NA prediction 0.484912107416991 Functional Gain - AP4S1 ENSG00000100478 UTR5 Human protein_coding chr14:31494745 chr14:31494743 . . 0 19 hm6Am_associated_SNPs_2344 0 0 0 2 31494734 31494757 mRNA hsa-miR-200a AP4S1 miRanda miRanda
183 chr16 67202771 67202771 1 + G C HNSC 67202770 + 67202750 67202790 41 GAAAGCGGGGACAGGAGCCCAGAGAGTCTGCTGCCTCCGAT GAAAGCGGGGACAGGAGCCCACAGAGTCTGCTGCCTCCGAT < 41bp 0.528066801428534 0.770303395981794 NA NA prediction 0.48447318910652 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67202770 chr16:67202771 nonsynonymous SNV 0.929 0 22 hm6Am_associated_SNPs_2352 0 0 0 2 67202753 67202774 mRNA hsa-miR-330-5p HSF4 miRanda miRanda
184 chr16 67202771 67202771 1 + G C HNSC 67202770 + 67202750 67202790 41 GAAAGCGGGGACAGGAGCCCAGAGAGTCTGCTGCCTCCGAT GAAAGCGGGGACAGGAGCCCACAGAGTCTGCTGCCTCCGAT < 41bp 0.528066801428534 0.770303395981794 NA NA prediction 0.48447318910652 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67202770 chr16:67202771 nonsynonymous SNV 0.929 0 22 hm6Am_associated_SNPs_2352 0 0 0 2 67202753 67202774 mRNA hsa-miR-326 HSF4 miRanda miRanda
185 chr6 45296486 45296486 1 + G A UCEC 45296488 + 45296468 45296508 41 CATCAAACAGCCTCTTCAGCACAGTGACACCATGTCAGCAA CATCAAACAGCCTCTTCAACACAGTGACACCATGTCAGCAA < 41bp 0.494038389742343 0.742042943592741 NA NA prediction 0.484085887185482 Functional Gain - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45296488 chr6:45296486 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2368 0 0 0 4 45296471 45296491 mRNA hsa-miR-218 RUNX2 miRanda miRanda
186 chr6 45296486 45296486 1 + G A UCEC 45296488 + 45296468 45296508 41 CATCAAACAGCCTCTTCAGCACAGTGACACCATGTCAGCAA CATCAAACAGCCTCTTCAACACAGTGACACCATGTCAGCAA < 41bp 0.494038389742343 0.742042943592741 NA NA prediction 0.484085887185482 Functional Gain - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45296488 chr6:45296486 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2368 0 0 0 4 45296483 45296507 mRNA hsa-miR-221 RUNX2 miRanda miRanda
187 chr6 45296486 45296486 1 + G A UCEC 45296488 + 45296468 45296508 41 CATCAAACAGCCTCTTCAGCACAGTGACACCATGTCAGCAA CATCAAACAGCCTCTTCAACACAGTGACACCATGTCAGCAA < 41bp 0.494038389742343 0.742042943592741 NA NA prediction 0.484085887185482 Functional Gain - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45296488 chr6:45296486 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2368 0 0 0 4 45296465 45296486 mRNA hsa-miR-488 RUNX2 miRanda miRanda
188 chr6 45296486 45296486 1 + G A UCEC 45296488 + 45296468 45296508 41 CATCAAACAGCCTCTTCAGCACAGTGACACCATGTCAGCAA CATCAAACAGCCTCTTCAACACAGTGACACCATGTCAGCAA < 41bp 0.494038389742343 0.742042943592741 NA NA prediction 0.484085887185482 Functional Gain - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45296488 chr6:45296486 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2368 0 0 0 4 45296486 45296509 mRNA hsa-miR-758 RUNX2 miRanda miRanda
189 chr2 14775439 14775439 1 + G A UCEC 14775441 + 14775421 14775461 41 AGAACTGGTCTCTACAGGGCACAGTTCAGCTCCTCTGTGGA AGAACTGGTCTCTACAGGACACAGTTCAGCTCCTCTGTGGA < 41bp 0.49449344434254 0.741382689188054 NA NA prediction 0.482765378376108 Functional Gain - FAM84A ENSG00000265629 CDS Human other chr2:14775441 chr2:14775439 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_2395 0 0 0 1 14775425 14775442 mRNA hsa-miR-874 FAM84A miRanda miRanda
190 chr1 70820689 70820689 1 + G A HNSC 70820691 + 70820671 70820711 41 TCCGGATCTGAGCCTCCCGCAGAGGAATGCAGAATGACGCC TCCGGATCTGAGCCTCCCACAGAGGAATGCAGAATGACGCC < 41bp 0.481894341994226 0.740030595263877 NA NA prediction 0.480061190527753 Functional Gain - HHLA3 ENSG00000197568 CDS Human protein_coding chr1:70820691 chr1:70820689 nonsynonymous SNV 0.032 2 19 hm6Am_associated_SNPs_2446 0 0 0 1 70820684 70820705 mRNA hsa-miR-544 HHLA3 miRanda miRanda
191 chr4 4304434 4304434 1 + G C OV 4304433 + 4304413 4304453 41 TCTGCCCCACACCCTGAGTCAGACGCCACATGCCAACAACC TCTGCCCCACACCCTGAGTCACACGCCACATGCCAACAACC < 41bp 0.519836207168581 0.758792611486585 NA NA prediction 0.477912808636007 Functional Gain - ZBTB49 ENSG00000168826 CDS Human protein_coding chr4:4304433 chr4:4304434 nonsynonymous SNV 0.013 2 22 hm6Am_associated_SNPs_2505 0 0 0 1 4304421 4304443 mRNA hsa-miR-210 ZBTB49 miRanda miRanda
192 chr10 104591639 104591639 1 + G A rs45609333 104591641 + 104591621 104591661 41 TGCGTTTGGAGCTGCAGCGCATGTTATGTGCGTGCTGCAGC TGCGTTTGGAGCTGCAGCACATGTTATGTGCGTGCTGCAGC < 41bp 0.505438625869703 0.744199966734931 NA NA prediction 0.477522681730456 Functional Gain - CYP17A1 ENSG00000148795 intronic Human protein_coding chr10:104591641 chr10:104591639 . . 0 19 hm6Am_associated_SNPs_2516 0 0 0 3 104591634 104591657 mRNA hsa-miR-29a C10orf26 miRanda miRanda
193 chr10 104591639 104591639 1 + G A rs45609333 104591641 + 104591621 104591661 41 TGCGTTTGGAGCTGCAGCGCATGTTATGTGCGTGCTGCAGC TGCGTTTGGAGCTGCAGCACATGTTATGTGCGTGCTGCAGC < 41bp 0.505438625869703 0.744199966734931 NA NA prediction 0.477522681730456 Functional Gain - CYP17A1 ENSG00000148795 intronic Human protein_coding chr10:104591641 chr10:104591639 . . 0 19 hm6Am_associated_SNPs_2516 0 0 0 3 104591634 104591657 mRNA hsa-miR-29b C10orf26 miRanda miRanda
194 chr10 104591639 104591639 1 + G A rs45609333 104591641 + 104591621 104591661 41 TGCGTTTGGAGCTGCAGCGCATGTTATGTGCGTGCTGCAGC TGCGTTTGGAGCTGCAGCACATGTTATGTGCGTGCTGCAGC < 41bp 0.505438625869703 0.744199966734931 NA NA prediction 0.477522681730456 Functional Gain - CYP17A1 ENSG00000148795 intronic Human protein_coding chr10:104591641 chr10:104591639 . . 0 19 hm6Am_associated_SNPs_2516 0 0 0 3 104591634 104591657 mRNA hsa-miR-29c C10orf26 miRanda miRanda
195 chr16 57060749 57060749 1 + G A LUAD 57060751 + 57060731 57060771 41 GAGCTGGCCAGTCTCACCGCACAAAGCCTCCCCTATCAACT GAGCTGGCCAGTCTCACCACACAAAGCCTCCCCTATCAACT < 41bp 0.511106865627315 0.749784732732384 NA NA prediction 0.477355734210138 Functional Gain - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57060751 chr16:57060749 nonsynonymous SNV 0.100 3 19 hm6Am_associated_SNPs_2517 0 0 0 1 57060730 57060754 mRNA hsa-miR-210 NLRC5 miRanda miRanda
196 chr6 54254685 54254685 1 + G A LUAD 54254687 + 54254667 54254707 41 ATTGAAAAGTTGATTATCGCAGCTTGGGGCCAACTGACGAG ATTGAAAAGTTGATTATCACAGCTTGGGGCCAACTGACGAG < 41bp 0.529105942140456 0.767422132532159 NA NA prediction 0.476632380783405 Functional Gain - TINAG ENSG00000137251 CDS Human protein_coding chr6:54254687 chr6:54254685 nonsynonymous SNV 1.000 3 19 hm6Am_associated_SNPs_2535 0 0 0 1 54254684 54254705 mRNA hsa-miR-223 TINAG miRanda miRanda
197 chr19 14817145 14817145 1 + G A rs4809215 14817147 + 14817127 14817167 41 TCACTGACTGCCTGCTCCGCATTCACGCAGGTCCACCTCCA TCACTGACTGCCTGCTCCACATTCACGCAGGTCCACCTCCA < 41bp 0.489842903458442 0.738186986320909 NA NA prediction 0.476373972641818 Functional Gain - ZNF333 ENSG00000160961 intronic Human protein_coding chr19:14817147 chr19:14817145 . . 0 19 hm6Am_associated_SNPs_2539 0 0 0 1 14817135 14817158 mRNA hsa-miR-370 ZNF333 miRanda miRanda
198 chr5 1037993 1037993 1 + G C HNSC 1037992 + 1037972 1038012 41 CCAGGCCCGGTCCCGCTCCCAGGAGCCAGATACACATGCCG CCAGGCCCGGTCCCGCTCCCACGAGCCAGATACACATGCCG < 41bp 0.503449238244948 0.741218677223343 NA NA prediction 0.475538877956791 Functional Gain - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1037992 chr5:1037993 nonsynonymous SNV 0.033 1 22 hm6Am_associated_SNPs_2559 0 0 0 5 1037993 1038012 mRNA hsa-miR-34a NKD2 miRanda miRanda
199 chr5 1037993 1037993 1 + G C HNSC 1037992 + 1037972 1038012 41 CCAGGCCCGGTCCCGCTCCCAGGAGCCAGATACACATGCCG CCAGGCCCGGTCCCGCTCCCACGAGCCAGATACACATGCCG < 41bp 0.503449238244948 0.741218677223343 NA NA prediction 0.475538877956791 Functional Gain - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1037992 chr5:1037993 nonsynonymous SNV 0.033 1 22 hm6Am_associated_SNPs_2559 0 0 0 5 1037980 1038001 mRNA hsa-miR-149 NKD2 miRanda miRanda
200 chr5 1037993 1037993 1 + G C HNSC 1037992 + 1037972 1038012 41 CCAGGCCCGGTCCCGCTCCCAGGAGCCAGATACACATGCCG CCAGGCCCGGTCCCGCTCCCACGAGCCAGATACACATGCCG < 41bp 0.503449238244948 0.741218677223343 NA NA prediction 0.475538877956791 Functional Gain - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1037992 chr5:1037993 nonsynonymous SNV 0.033 1 22 hm6Am_associated_SNPs_2559 0 0 0 5 1037989 1038012 mRNA hsa-miR-34c-5p NKD2 miRanda miRanda
201 chr5 1037993 1037993 1 + G C HNSC 1037992 + 1037972 1038012 41 CCAGGCCCGGTCCCGCTCCCAGGAGCCAGATACACATGCCG CCAGGCCCGGTCCCGCTCCCACGAGCCAGATACACATGCCG < 41bp 0.503449238244948 0.741218677223343 NA NA prediction 0.475538877956791 Functional Gain - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1037992 chr5:1037993 nonsynonymous SNV 0.033 1 22 hm6Am_associated_SNPs_2559 0 0 0 5 1037989 1038012 mRNA hsa-miR-449a NKD2 miRanda miRanda
202 chr5 1037993 1037993 1 + G C HNSC 1037992 + 1037972 1038012 41 CCAGGCCCGGTCCCGCTCCCAGGAGCCAGATACACATGCCG CCAGGCCCGGTCCCGCTCCCACGAGCCAGATACACATGCCG < 41bp 0.503449238244948 0.741218677223343 NA NA prediction 0.475538877956791 Functional Gain - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1037992 chr5:1037993 nonsynonymous SNV 0.033 1 22 hm6Am_associated_SNPs_2559 0 0 0 5 1037989 1038012 mRNA hsa-miR-449b NKD2 miRanda miRanda
203 chrX 22010739 22010739 1 + G T LUAD 22010741 + 22010721 22010761 41 TGTGTCAATCTGACAGAAGCACTGTCGCTCTATGAAGAACA TGTGTCAATCTGACAGAATCACTGTCGCTCTATGAAGAACA < 41bp 0.32175209818491 0.736649755752719 NA NA prediction 0.473299511505438 Functional Gain - SMS ENSG00000102172 CDS Human protein_coding chrX:22010741 chrX:22010739 nonsynonymous SNV 0.946 1 19 hm6Am_associated_SNPs_2603 0 0 1 2 22010735 22010756 mRNA hsa-miR-376a SMS miRanda miRanda
204 chrX 22010739 22010739 1 + G T LUAD 22010741 + 22010721 22010761 41 TGTGTCAATCTGACAGAAGCACTGTCGCTCTATGAAGAACA TGTGTCAATCTGACAGAATCACTGTCGCTCTATGAAGAACA < 41bp 0.32175209818491 0.736649755752719 NA NA prediction 0.473299511505438 Functional Gain - SMS ENSG00000102172 CDS Human protein_coding chrX:22010741 chrX:22010739 nonsynonymous SNV 0.946 1 19 hm6Am_associated_SNPs_2603 0 0 1 2 22010734 22010756 mRNA hsa-miR-376b SMS miRanda miRanda
205 chr14 77294654 77294654 1 + G C rs114437600 77294653 + 77294633 77294673 41 GATGAGATTGAAATTGAGCCAGTACGACAGAGCAGCGATAA GATGAGATTGAAATTGAGCCACTACGACAGAGCAGCGATAA < 41bp 0.500935451786711 0.737551049952224 NA NA prediction 0.473231196331028 Functional Gain - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77294653 chr14:77294654 nonsynonymous SNV 0.000 0 22 hm6Am_associated_SNPs_2605 0 0 0 1 77294636 77294655 mRNA hsa-miR-149 C14orf166B miRanda miRanda
206 chr10 99509251 99509251 1 + G T rs35077384 99509253 + 99509233 99509273 41 TCTATGGGGCTCTTCTGGGCACAGTCTGCATGCTGTATTTG TCTATGGGGCTCTTCTGGTCACAGTCTGCATGCTGTATTTG < 41bp 0.694325732323228 0.930729183354881 NA NA prediction 0.472806902063305 Functional Gain - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99509253 chr10:99509251 nonsynonymous SNV 0.896 2 19 hm6Am_associated_SNPs_2614 5 0 1 3 99509235 99509258 mRNA hsa-miR-193a-3p ZFYVE27 miRanda miRanda
207 chr10 99509251 99509251 1 + G T rs35077384 99509253 + 99509233 99509273 41 TCTATGGGGCTCTTCTGGGCACAGTCTGCATGCTGTATTTG TCTATGGGGCTCTTCTGGTCACAGTCTGCATGCTGTATTTG < 41bp 0.694325732323228 0.930729183354881 NA NA prediction 0.472806902063305 Functional Gain - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99509253 chr10:99509251 nonsynonymous SNV 0.896 2 19 hm6Am_associated_SNPs_2614 5 0 1 3 99509235 99509258 mRNA hsa-miR-193b ZFYVE27 miRanda miRanda
208 chr10 99509251 99509251 1 + G T rs35077384 99509253 + 99509233 99509273 41 TCTATGGGGCTCTTCTGGGCACAGTCTGCATGCTGTATTTG TCTATGGGGCTCTTCTGGTCACAGTCTGCATGCTGTATTTG < 41bp 0.694325732323228 0.930729183354881 NA NA prediction 0.472806902063305 Functional Gain - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99509253 chr10:99509251 nonsynonymous SNV 0.896 2 19 hm6Am_associated_SNPs_2614 5 0 1 3 99509246 99509267 mRNA hsa-miR-497 ZFYVE27 miRanda miRanda
209 chr6 28497326 28497326 1 + G T UCEC 28497328 + 28497308 28497348 41 CAAGCAGTATGTGGGCAAGCACATCCTCTTCGTCAACGTGG CAAGCAGTATGTGGGCAATCACATCCTCTTCGTCAACGTGG < 41bp 0.319118731181317 0.73639714107371 NA NA prediction 0.472794282147419 Functional Gain - GPX5 ENSG00000224586 CDS Human protein_coding chr6:28497328 chr6:28497326 nonsynonymous SNV 0.828 4 19 hm6Am_associated_SNPs_2615 0 0 0 1 28497314 28497331 mRNA hsa-miR-218 GPX5 miRanda miRanda
210 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632524 141632548 mRNA hsa-miR-17 ATP1B3 miRanda miRanda
211 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632524 141632548 mRNA hsa-miR-20a ATP1B3 miRanda miRanda
212 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632524 141632548 mRNA hsa-miR-93 ATP1B3 miRanda miRanda
213 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632524 141632548 mRNA hsa-miR-106a ATP1B3 miRanda miRanda
214 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632526 141632548 mRNA hsa-miR-106b ATP1B3 miRanda miRanda
215 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632526 141632547 mRNA hsa-miR-302a ATP1B3 miRanda miRanda
216 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632526 141632547 mRNA hsa-miR-302b ATP1B3 miRanda miRanda
217 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632526 141632547 mRNA hsa-miR-302c ATP1B3 miRanda miRanda
218 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632523 141632547 mRNA hsa-miR-302d ATP1B3 miRanda miRanda
219 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632525 141632547 mRNA hsa-miR-372 ATP1B3 miRanda miRanda
220 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632528 141632547 mRNA hsa-miR-373 ATP1B3 miRanda miRanda
221 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632524 141632548 mRNA hsa-miR-20b ATP1B3 miRanda miRanda
222 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632527 141632547 mRNA hsa-miR-520e ATP1B3 miRanda miRanda
223 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632527 141632547 mRNA hsa-miR-520a-3p ATP1B3 miRanda miRanda
224 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632527 141632547 mRNA hsa-miR-520b ATP1B3 miRanda miRanda
225 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632526 141632547 mRNA hsa-miR-520c-3p ATP1B3 miRanda miRanda
226 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632528 141632548 mRNA hsa-miR-519d ATP1B3 miRanda miRanda
227 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632526 141632547 mRNA hsa-miR-520d-3p ATP1B3 miRanda miRanda
228 chr3 141632541 141632541 1 + G T UCEC 141632543 + 141632523 141632563 41 ACAGTCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCC ACAGTCTGTCCTGATGGATCACTTTTTGAACAGAAGGGTCC < 41bp 0.325867866001274 0.736225310663432 NA NA prediction 0.472450621326864 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141632543 chr3:141632541 nonsynonymous SNV 0.046 0 19 hm6Am_associated_SNPs_2625 0 0 1 19 141632532 141632547 mRNA hsa-miR-302e ATP1B3 miRanda miRanda
229 chr16 89761404 89761404 1 + G A SARC 89761406 + 89761386 89761426 41 GCCCTACAACAACCTGAAGCACAAGTTCCCATGGCTGTCGG GCCCTACAACAACCTGAAACACAAGTTCCCATGGCTGTCGG < 41bp 0.526479952737943 0.762501245182959 NA NA prediction 0.472042584890033 Functional Gain - CDK10 ENSG00000185324 CDS Human protein_coding chr16:89761406 chr16:89761404 synonymous SNV . 0 19 hm6Am_associated_SNPs_2640 0 0 1 1 89761389 89761409 mRNA hsa-miR-218 CDK10 miRanda miRanda
230 chr1 71513050 71513050 1 + G A UCEC 71513052 + 71513032 71513072 41 AGCTGCGCGACACGAGCAGCATGGCCAGTGCGTTGCCCACG AGCTGCGCGACACGAGCAACATGGCCAGTGCGTTGCCCACG < 41bp 0.474907125582593 0.735644406216077 NA NA prediction 0.471288812432154 Functional Gain - PTGER3 ENSG00000050628 CDS Human protein_coding chr1:71513052 chr1:71513050 synonymous SNV . 0 19 hm6Am_associated_SNPs_2656 0 0 0 2 71513040 71513061 mRNA hsa-miR-193a-3p LOC100132618 miRanda miRanda
231 chr1 71513050 71513050 1 + G A UCEC 71513052 + 71513032 71513072 41 AGCTGCGCGACACGAGCAGCATGGCCAGTGCGTTGCCCACG AGCTGCGCGACACGAGCAACATGGCCAGTGCGTTGCCCACG < 41bp 0.474907125582593 0.735644406216077 NA NA prediction 0.471288812432154 Functional Gain - PTGER3 ENSG00000050628 CDS Human protein_coding chr1:71513052 chr1:71513050 synonymous SNV . 0 19 hm6Am_associated_SNPs_2656 0 0 0 2 71513040 71513061 mRNA hsa-miR-193b LOC100132618 miRanda miRanda
232 chr11 117282579 117282579 1 + G A PRAD 117282581 + 117282561 117282601 41 GCAGCACCACCTTTCAGGGCATAATTGAGGCCAACCGGAGG GCAGCACCACCTTTCAGGACATAATTGAGGCCAACCGGAGG < 41bp 0.552645316548768 0.785504349063544 NA NA prediction 0.465718065029551 Functional Gain - CEP164 ENSG00000110274 CDS Human protein_coding chr11:117282581 chr11:117282579 nonsynonymous SNV 0.067 0 19 hm6Am_associated_SNPs_2763 0 0 1 1 117282561 117282582 mRNA hsa-miR-874 CEP164 miRanda miRanda
233 chr13 41932483 41932483 1 + G C KIRC 41932482 + 41932462 41932502 41 GACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACT GACAACACTACTCTGGGTTCACTATTTCCTGGCACAGCACT < 41bp 0.572125012259486 0.80464193072038 NA NA prediction 0.465033836921789 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932482 chr13:41932483 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2775 0 0 1 16 41932483 41932505 mRNA hsa-miR-93 NAA16 miRanda miRanda
234 chr13 41932483 41932483 1 + G C KIRC 41932482 + 41932462 41932502 41 GACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACT GACAACACTACTCTGGGTTCACTATTTCCTGGCACAGCACT < 41bp 0.572125012259486 0.80464193072038 NA NA prediction 0.465033836921789 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932482 chr13:41932483 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2775 0 0 1 16 41932463 41932488 mRNA hsa-miR-200b NAA16 miRanda miRanda
235 chr13 41932483 41932483 1 + G C KIRC 41932482 + 41932462 41932502 41 GACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACT GACAACACTACTCTGGGTTCACTATTTCCTGGCACAGCACT < 41bp 0.572125012259486 0.80464193072038 NA NA prediction 0.465033836921789 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932482 chr13:41932483 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2775 0 0 1 16 41932462 41932488 mRNA hsa-miR-200c NAA16 miRanda miRanda
236 chr13 41932483 41932483 1 + G C KIRC 41932482 + 41932462 41932502 41 GACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACT GACAACACTACTCTGGGTTCACTATTTCCTGGCACAGCACT < 41bp 0.572125012259486 0.80464193072038 NA NA prediction 0.465033836921789 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932482 chr13:41932483 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2775 0 0 1 16 41932480 41932504 mRNA hsa-miR-302a NAA16 miRanda miRanda
237 chr13 41932483 41932483 1 + G C KIRC 41932482 + 41932462 41932502 41 GACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACT GACAACACTACTCTGGGTTCACTATTTCCTGGCACAGCACT < 41bp 0.572125012259486 0.80464193072038 NA NA prediction 0.465033836921789 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932482 chr13:41932483 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2775 0 0 1 16 41932480 41932504 mRNA hsa-miR-302b NAA16 miRanda miRanda
238 chr13 41932483 41932483 1 + G C KIRC 41932482 + 41932462 41932502 41 GACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACT GACAACACTACTCTGGGTTCACTATTTCCTGGCACAGCACT < 41bp 0.572125012259486 0.80464193072038 NA NA prediction 0.465033836921789 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932482 chr13:41932483 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2775 0 0 1 16 41932480 41932504 mRNA hsa-miR-302c NAA16 miRanda miRanda
239 chr13 41932483 41932483 1 + G C KIRC 41932482 + 41932462 41932502 41 GACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACT GACAACACTACTCTGGGTTCACTATTTCCTGGCACAGCACT < 41bp 0.572125012259486 0.80464193072038 NA NA prediction 0.465033836921789 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932482 chr13:41932483 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2775 0 0 1 16 41932480 41932504 mRNA hsa-miR-302d NAA16 miRanda miRanda
240 chr13 41932483 41932483 1 + G C KIRC 41932482 + 41932462 41932502 41 GACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACT GACAACACTACTCTGGGTTCACTATTTCCTGGCACAGCACT < 41bp 0.572125012259486 0.80464193072038 NA NA prediction 0.465033836921789 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932482 chr13:41932483 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2775 0 0 1 16 41932482 41932504 mRNA hsa-miR-372 NAA16 miRanda miRanda
241 chr13 41932483 41932483 1 + G C KIRC 41932482 + 41932462 41932502 41 GACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACT GACAACACTACTCTGGGTTCACTATTTCCTGGCACAGCACT < 41bp 0.572125012259486 0.80464193072038 NA NA prediction 0.465033836921789 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932482 chr13:41932483 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2775 0 0 1 16 41932482 41932504 mRNA hsa-miR-373 NAA16 miRanda miRanda
242 chr13 41932483 41932483 1 + G C KIRC 41932482 + 41932462 41932502 41 GACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACT GACAACACTACTCTGGGTTCACTATTTCCTGGCACAGCACT < 41bp 0.572125012259486 0.80464193072038 NA NA prediction 0.465033836921789 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932482 chr13:41932483 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2775 0 0 1 16 41932467 41932488 mRNA hsa-miR-429 NAA16 miRanda miRanda
243 chr13 41932483 41932483 1 + G C KIRC 41932482 + 41932462 41932502 41 GACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACT GACAACACTACTCTGGGTTCACTATTTCCTGGCACAGCACT < 41bp 0.572125012259486 0.80464193072038 NA NA prediction 0.465033836921789 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932482 chr13:41932483 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2775 0 0 1 16 41932483 41932504 mRNA hsa-miR-520a-3p NAA16 miRanda miRanda
244 chr13 41932483 41932483 1 + G C KIRC 41932482 + 41932462 41932502 41 GACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACT GACAACACTACTCTGGGTTCACTATTTCCTGGCACAGCACT < 41bp 0.572125012259486 0.80464193072038 NA NA prediction 0.465033836921789 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932482 chr13:41932483 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2775 0 0 1 16 41932483 41932504 mRNA hsa-miR-520b NAA16 miRanda miRanda
245 chr13 41932483 41932483 1 + G C KIRC 41932482 + 41932462 41932502 41 GACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACT GACAACACTACTCTGGGTTCACTATTTCCTGGCACAGCACT < 41bp 0.572125012259486 0.80464193072038 NA NA prediction 0.465033836921789 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932482 chr13:41932483 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2775 0 0 1 16 41932482 41932504 mRNA hsa-miR-520c-3p NAA16 miRanda miRanda
246 chr13 41932483 41932483 1 + G C KIRC 41932482 + 41932462 41932502 41 GACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACT GACAACACTACTCTGGGTTCACTATTTCCTGGCACAGCACT < 41bp 0.572125012259486 0.80464193072038 NA NA prediction 0.465033836921789 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932482 chr13:41932483 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2775 0 0 1 16 41932483 41932505 mRNA hsa-miR-519d NAA16 miRanda miRanda
247 chr13 41932483 41932483 1 + G C KIRC 41932482 + 41932462 41932502 41 GACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACT GACAACACTACTCTGGGTTCACTATTTCCTGGCACAGCACT < 41bp 0.572125012259486 0.80464193072038 NA NA prediction 0.465033836921789 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932482 chr13:41932483 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2775 0 0 1 16 41932483 41932504 mRNA hsa-miR-520d-3p NAA16 miRanda miRanda
248 chr13 41932483 41932483 1 + G C KIRC 41932482 + 41932462 41932502 41 GACAACACTACTCTGGGTTCAGTATTTCCTGGCACAGCACT GACAACACTACTCTGGGTTCACTATTTCCTGGCACAGCACT < 41bp 0.572125012259486 0.80464193072038 NA NA prediction 0.465033836921789 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932482 chr13:41932483 nonsynonymous SNV 1.000 0 22 hm6Am_associated_SNPs_2775 0 0 1 16 41932479 41932499 mRNA hsa-miR-455-5p NAA16 miRanda miRanda
249 chr14 38293137 38293137 1 + G C BLCA 38293136 + 38293116 38293156 41 ATCCAGCATACATAAAAGCCAGAATTAGTTTTGGCTATAAT ATCCAGCATACATAAAAGCCACAATTAGTTTTGGCTATAAT < 41bp 0.509624082920554 0.741006651037087 NA NA prediction 0.462765136233065 Functional Gain - TTC6 ENSG00000139865 CDS Human protein_coding chr14:38293136 chr14:38293137 nonsynonymous SNV 0.999 4 22 hm6Am_associated_SNPs_2828 0 0 0 3 38293119 38293138 mRNA hsa-miR-135a TTC6 miRanda miRanda
250 chr14 38293137 38293137 1 + G C BLCA 38293136 + 38293116 38293156 41 ATCCAGCATACATAAAAGCCAGAATTAGTTTTGGCTATAAT ATCCAGCATACATAAAAGCCACAATTAGTTTTGGCTATAAT < 41bp 0.509624082920554 0.741006651037087 NA NA prediction 0.462765136233065 Functional Gain - TTC6 ENSG00000139865 CDS Human protein_coding chr14:38293136 chr14:38293137 nonsynonymous SNV 0.999 4 22 hm6Am_associated_SNPs_2828 0 0 0 3 38293116 38293138 mRNA hsa-miR-149 TTC6 miRanda miRanda
251 chr14 38293137 38293137 1 + G C BLCA 38293136 + 38293116 38293156 41 ATCCAGCATACATAAAAGCCAGAATTAGTTTTGGCTATAAT ATCCAGCATACATAAAAGCCACAATTAGTTTTGGCTATAAT < 41bp 0.509624082920554 0.741006651037087 NA NA prediction 0.462765136233065 Functional Gain - TTC6 ENSG00000139865 CDS Human protein_coding chr14:38293136 chr14:38293137 nonsynonymous SNV 0.999 4 22 hm6Am_associated_SNPs_2828 0 0 0 3 38293119 38293138 mRNA hsa-miR-135b TTC6 miRanda miRanda
252 chr19 40130291 40130291 1 + G A rs146282852 40130293 + 40130273 40130313 41 AGGTATGGATCTAAGATGGCACTGTCAGTAAGAGGCAGAAT AGGTATGGATCTAAGATGACACTGTCAGTAAGAGGCAGAAT < 41bp 0.515931106869964 0.74691294948031 NA NA prediction 0.461963685220691 Functional Gain - LOC100129935 ENSG00000268153 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:40130293 chr19:40130291 . . 0 19 hm6Am_associated_SNPs_2842 0 0 0 1 40130275 40130297 mRNA hsa-miR-148b LOC100129935 miRanda miRanda
253 chr1 117311437 117311437 1 + G C rs144225075 117311439 + 117311419 117311459 41 TGTCTTTTTCAATAAAAAGCACTGTGGATTTCTGCCCTCCT TGTCTTTTTCAATAAAAACCACTGTGGATTTCTGCCCTCCT < 41bp 0.403756013294849 0.730981006601361 NA NA prediction 0.461962013202722 Functional Gain - CD2 ENSG00000116824 UTR3 Human protein_coding chr1:117311439 chr1:117311437 . . 0 19 hm6Am_associated_SNPs_2843 0 0 0 1 117311425 117311445 mRNA hsa-miR-128 CD2 miRanda miRanda
254 chr1 107973466 107973466 1 + G A GBM 107973468 + 107973448 107973488 41 ACACAACACTAGAGGGCAGCACTGTGAGTTATGCAGGCTGG ACACAACACTAGAGGGCAACACTGTGAGTTATGCAGGCTGG < 41bp 0.532169395806685 0.762555687848433 NA NA prediction 0.460772584083496 Functional Gain - NTNG1 ENSG00000162631 CDS Human protein_coding chr1:107973468 chr1:107973466 synonymous SNV . 0 19 hm6Am_associated_SNPs_2874 0 0 0 3 107973456 107973475 mRNA hsa-miR-27a NTNG1 miRanda miRanda
255 chr1 107973466 107973466 1 + G A GBM 107973468 + 107973448 107973488 41 ACACAACACTAGAGGGCAGCACTGTGAGTTATGCAGGCTGG ACACAACACTAGAGGGCAACACTGTGAGTTATGCAGGCTGG < 41bp 0.532169395806685 0.762555687848433 NA NA prediction 0.460772584083496 Functional Gain - NTNG1 ENSG00000162631 CDS Human protein_coding chr1:107973468 chr1:107973466 synonymous SNV . 0 19 hm6Am_associated_SNPs_2874 0 0 0 3 107973456 107973475 mRNA hsa-miR-27b NTNG1 miRanda miRanda
256 chr1 107973466 107973466 1 + G A GBM 107973468 + 107973448 107973488 41 ACACAACACTAGAGGGCAGCACTGTGAGTTATGCAGGCTGG ACACAACACTAGAGGGCAACACTGTGAGTTATGCAGGCTGG < 41bp 0.532169395806685 0.762555687848433 NA NA prediction 0.460772584083496 Functional Gain - NTNG1 ENSG00000162631 CDS Human protein_coding chr1:107973468 chr1:107973466 synonymous SNV . 0 19 hm6Am_associated_SNPs_2874 0 0 0 3 107973456 107973474 mRNA hsa-miR-128 NTNG1 miRanda miRanda
257 chr1 170705232 170705232 1 + G T SARC 170705234 + 170705214 170705254 41 TGTGCCAACAATAGCCCTGCACAGGGCATCAACATGGCCAA TGTGCCAACAATAGCCCTTCACAGGGCATCAACATGGCCAA < 41bp 0.323864440378357 0.730206283698715 NA NA prediction 0.46041256739743 Functional Gain - PRRX1 ENSG00000116132 CDS Human protein_coding chr1:170705234 chr1:170705232 nonsynonymous SNV 1.000 2 19 hm6Am_associated_SNPs_2888 0 0 0 1 170705223 170705242 mRNA hsa-miR-874 PRRX1 miRanda miRanda
258 chr19 58740863 58740863 1 + G A rs148549424 58740865 + 58740845 58740885 41 GAGCCTCCTGGCACAGCGGCACCAGGCAGGTGACGCCTATT GAGCCTCCTGGCACAGCGACACCAGGCAGGTGACGCCTATT < 41bp 0.52664751867557 0.756485202351913 NA NA prediction 0.459675367352685 Functional Gain - ZNF544 ENSG00000198131;ENSG00000269545 UTR5 Human other chr19:58740865 chr19:58740863 . . 0 19 hm6Am_associated_SNPs_2903 0 0 1 1 58740843 58740866 mRNA hsa-miR-874 ZNF544 miRanda miRanda
259 chr11 1480494 1480494 1 + G A rs534638646 1480496 + 1480476 1480516 41 ATCCCCCACGCTCACCTGGCACCTCCACCTGCCACTTCACC ATCCCCCACGCTCACCTGACACCTCCACCTGCCACTTCACC < 41bp 0.549974075928167 0.779493973346184 NA NA prediction 0.459039794836035 Functional Gain - BRSK2 ENSG00000174672 intronic Human protein_coding chr11:1480496 chr11:1480494 . . 0 19 hm6Am_associated_SNPs_2918 0 0 0 2 1480486 1480509 mRNA hsa-miR-449a BRSK2 miRanda miRanda
260 chr11 1480494 1480494 1 + G A rs534638646 1480496 + 1480476 1480516 41 ATCCCCCACGCTCACCTGGCACCTCCACCTGCCACTTCACC ATCCCCCACGCTCACCTGACACCTCCACCTGCCACTTCACC < 41bp 0.549974075928167 0.779493973346184 NA NA prediction 0.459039794836035 Functional Gain - BRSK2 ENSG00000174672 intronic Human protein_coding chr11:1480496 chr11:1480494 . . 0 19 hm6Am_associated_SNPs_2918 0 0 0 2 1480486 1480509 mRNA hsa-miR-449b BRSK2 miRanda miRanda
261 chr6 36570707 36570707 1 + G C rs75915494 36570706 + 36570686 36570726 41 TAGCATAATTGTGTATAGTCAGTTGAACCCACTGTTACCAT TAGCATAATTGTGTATAGTCACTTGAACCCACTGTTACCAT < 41bp 0.539015363089536 0.768355840442854 NA NA prediction 0.458680954706636 Functional Gain - SRSF3 ENSG00000112081 UTR3 Human protein_coding chr6:36570706 chr6:36570707 . . 0 22 hm6Am_associated_SNPs_2926 0 0 1 1 36570703 36570724 mRNA hsa-miR-194 SFRS3 miRanda miRanda
262 chr2 158140835 158140835 1 + G C LUAD 158140834 + 158140814 158140854 41 ACAATAACCTCCCAACCACCAGTGTCATCATGTGCTTTGTG ACAATAACCTCCCAACCACCACTGTCATCATGTGCTTTGTG < 41bp 0.478112514519761 0.729260676772771 NA NA prediction 0.458521353545542 Functional Gain - GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158140834 chr2:158140835 nonsynonymous SNV 0.997 1 22 hm6Am_associated_SNPs_2931 0 0 1 1 158140820 158140842 mRNA hsa-miR-425 GALNT5 miRanda miRanda
263 chr3 126916537 126916537 1 + G T rs6770672 126916539 + 126916519 126916559 41 CTGTGAGTCCTCAAACATGCATGCATGCAACCTTGTAAAAT CTGTGAGTCCTCAAACATTCATGCATGCAACCTTGTAAAAT < 41bp 0.34664634620517 0.728764776589588 NA NA prediction 0.457529553179176 Functional Gain - C3orf56 ENSG00000214324 UTR3 Human lincRNA chr3:126916539 chr3:126916537 . . 0 19 hm6Am_associated_SNPs_2946 0 0 0 4 126916531 126916553 mRNA hsa-miR-18a C3orf56 miRanda miRanda
264 chr3 126916537 126916537 1 + G T rs6770672 126916539 + 126916519 126916559 41 CTGTGAGTCCTCAAACATGCATGCATGCAACCTTGTAAAAT CTGTGAGTCCTCAAACATTCATGCATGCAACCTTGTAAAAT < 41bp 0.34664634620517 0.728764776589588 NA NA prediction 0.457529553179176 Functional Gain - C3orf56 ENSG00000214324 UTR3 Human lincRNA chr3:126916539 chr3:126916537 . . 0 19 hm6Am_associated_SNPs_2946 0 0 0 4 126916520 126916543 mRNA hsa-miR-103 C3orf56 miRanda miRanda
265 chr3 126916537 126916537 1 + G T rs6770672 126916539 + 126916519 126916559 41 CTGTGAGTCCTCAAACATGCATGCATGCAACCTTGTAAAAT CTGTGAGTCCTCAAACATTCATGCATGCAACCTTGTAAAAT < 41bp 0.34664634620517 0.728764776589588 NA NA prediction 0.457529553179176 Functional Gain - C3orf56 ENSG00000214324 UTR3 Human lincRNA chr3:126916539 chr3:126916537 . . 0 19 hm6Am_associated_SNPs_2946 0 0 0 4 126916520 126916543 mRNA hsa-miR-107 C3orf56 miRanda miRanda
266 chr3 126916537 126916537 1 + G T rs6770672 126916539 + 126916519 126916559 41 CTGTGAGTCCTCAAACATGCATGCATGCAACCTTGTAAAAT CTGTGAGTCCTCAAACATTCATGCATGCAACCTTGTAAAAT < 41bp 0.34664634620517 0.728764776589588 NA NA prediction 0.457529553179176 Functional Gain - C3orf56 ENSG00000214324 UTR3 Human lincRNA chr3:126916539 chr3:126916537 . . 0 19 hm6Am_associated_SNPs_2946 0 0 0 4 126916530 126916553 mRNA hsa-miR-18b C3orf56 miRanda miRanda
267 chr10 22015206 22015206 1 + G T rs145605101 22015208 + 22015188 22015228 41 GGATCTTCTCTCAGTCAGGCACCATCTCATATGTATGGCAA GGATCTTCTCTCAGTCAGTCACCATCTCATATGTATGGCAA < 41bp 0.337222322408802 0.728307623271251 NA NA prediction 0.456615246542502 Functional Gain - MLLT10 ENSG00000078403 CDS Human protein_coding chr10:22015208 chr10:22015206 nonsynonymous SNV 0.989 1 19 hm6Am_associated_SNPs_2964 0 0 1 1 22015184 22015207 mRNA hsa-miR-370 MLLT10 miRanda miRanda
268 chr15 25453123 25453123 1 + G T LUAD 25453125 + 25453105 25453145 41 AGGTCCCCAGCTCCTGATGCACTGAAGCTCAGGCCCTTCCT AGGTCCCCAGCTCCTGATTCACTGAAGCTCAGGCCCTTCCT < 41bp 0.695956700616623 0.923916609992986 NA NA prediction 0.455919818752727 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25453125 chr15:25453123 . . 0 19 hm6Am_associated_SNPs_2976 0 0 0 3 25453109 25453129 mRNA hsa-miR-148a SNRPN miRanda miRanda
269 chr15 25453123 25453123 1 + G T LUAD 25453125 + 25453105 25453145 41 AGGTCCCCAGCTCCTGATGCACTGAAGCTCAGGCCCTTCCT AGGTCCCCAGCTCCTGATTCACTGAAGCTCAGGCCCTTCCT < 41bp 0.695956700616623 0.923916609992986 NA NA prediction 0.455919818752727 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25453125 chr15:25453123 . . 0 19 hm6Am_associated_SNPs_2976 0 0 0 3 25453110 25453129 mRNA hsa-miR-152 SNRPN miRanda miRanda
270 chr15 25453123 25453123 1 + G T LUAD 25453125 + 25453105 25453145 41 AGGTCCCCAGCTCCTGATGCACTGAAGCTCAGGCCCTTCCT AGGTCCCCAGCTCCTGATTCACTGAAGCTCAGGCCCTTCCT < 41bp 0.695956700616623 0.923916609992986 NA NA prediction 0.455919818752727 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25453125 chr15:25453123 . . 0 19 hm6Am_associated_SNPs_2976 0 0 0 3 25453109 25453129 mRNA hsa-miR-148b SNRPN miRanda miRanda
271 chr15 52497193 52497193 1 + G A COAD 52497195 + 52497175 52497215 41 GGGGTCCAGGCCGTTCTGGCACATGGTGGTGTAAAAGTAGC GGGGTCCAGGCCGTTCTGACACATGGTGGTGTAAAAGTAGC < 41bp 0.560990009671289 0.788845493192003 NA NA prediction 0.455710967041427 Functional Gain - MYO5C ENSG00000128833 CDS Human protein_coding chr15:52497195 chr15:52497193 synonymous SNV . 0 19 hm6Am_associated_SNPs_2985 0 0 0 1 52497180 52497199 mRNA hsa-miR-455-5p LOC100129973 miRanda miRanda
272 chr3 52326543 52326543 1 + G T LUSC 52326545 + 52326525 52326565 41 GCCCAGCGGCAGGCCGAGGCACTGGGCTACCAGGCTGTGGT GCCCAGCGGCAGGCCGAGTCACTGGGCTACCAGGCTGTGGT < 41bp 0.703491842784771 0.931100063204703 NA NA prediction 0.455216440839862 Functional Gain - GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52326545 chr3:52326543 nonsynonymous SNV 0.217 0 19 hm6Am_associated_SNPs_2998 0 0 1 2 52326543 52326569 mRNA hsa-miR-29a GLYCTK miRanda miRanda
273 chr3 52326543 52326543 1 + G T LUSC 52326545 + 52326525 52326565 41 GCCCAGCGGCAGGCCGAGGCACTGGGCTACCAGGCTGTGGT GCCCAGCGGCAGGCCGAGTCACTGGGCTACCAGGCTGTGGT < 41bp 0.703491842784771 0.931100063204703 NA NA prediction 0.455216440839862 Functional Gain - GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52326545 chr3:52326543 nonsynonymous SNV 0.217 0 19 hm6Am_associated_SNPs_2998 0 0 1 2 52326542 52326569 mRNA hsa-miR-29b GLYCTK miRanda miRanda
274 chr15 25417713 25417713 1 + G T LUSC 25417715 + 25417695 25417735 41 CTGGCACTCTGGTCTCCTGCACTGAGCTGTGGTGAGCACAT CTGGCACTCTGGTCTCCTTCACTGAGCTGTGGTGAGCACAT < 41bp 0.69756396684188 0.924540304398548 NA NA prediction 0.453952675113334 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25417715 chr15:25417713 . . 0 19 hm6Am_associated_SNPs_3029 0 0 0 4 25417695 25417719 mRNA hsa-miR-148a SNRPN miRanda miRanda
275 chr15 25417713 25417713 1 + G T LUSC 25417715 + 25417695 25417735 41 CTGGCACTCTGGTCTCCTGCACTGAGCTGTGGTGAGCACAT CTGGCACTCTGGTCTCCTTCACTGAGCTGTGGTGAGCACAT < 41bp 0.69756396684188 0.924540304398548 NA NA prediction 0.453952675113334 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25417715 chr15:25417713 . . 0 19 hm6Am_associated_SNPs_3029 0 0 0 4 25417696 25417719 mRNA hsa-miR-152 SNRPN miRanda miRanda
276 chr15 25417713 25417713 1 + G T LUSC 25417715 + 25417695 25417735 41 CTGGCACTCTGGTCTCCTGCACTGAGCTGTGGTGAGCACAT CTGGCACTCTGGTCTCCTTCACTGAGCTGTGGTGAGCACAT < 41bp 0.69756396684188 0.924540304398548 NA NA prediction 0.453952675113334 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25417715 chr15:25417713 . . 0 19 hm6Am_associated_SNPs_3029 0 0 0 4 25417708 25417725 mRNA hsa-miR-342-3p SNRPN miRanda miRanda
277 chr15 25417713 25417713 1 + G T LUSC 25417715 + 25417695 25417735 41 CTGGCACTCTGGTCTCCTGCACTGAGCTGTGGTGAGCACAT CTGGCACTCTGGTCTCCTTCACTGAGCTGTGGTGAGCACAT < 41bp 0.69756396684188 0.924540304398548 NA NA prediction 0.453952675113334 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25417715 chr15:25417713 . . 0 19 hm6Am_associated_SNPs_3029 0 0 0 4 25417695 25417719 mRNA hsa-miR-148b SNRPN miRanda miRanda
278 chr19 18677976 18677976 1 + G C BLCA 18677975 + 18677955 18677995 41 AAACTGGCCAGGCAGCACCCAGAGGCCTTCAGCCGTAAGTG AAACTGGCCAGGCAGCACCCACAGGCCTTCAGCCGTAAGTG < 41bp 0.562303297767876 0.788483862961717 NA NA prediction 0.452361130387682 Functional Gain - KXD1 ENSG00000105700 CDS Human protein_coding chr19:18677975 chr19:18677976 nonsynonymous SNV 0.985 1 22 hm6Am_associated_SNPs_3069 0 0 1 1 18677960 18677979 mRNA hsa-miR-326 C19orf50 miRanda miRanda
279 chr10 104590500 104590500 1 + G A COAD 104590502 + 104590482 104590522 41 CTTCCCTCCAGGCCTGGCGCACCTTGATCTTCACTTTGAAA CTTCCCTCCAGGCCTGGCACACCTTGATCTTCACTTTGAAA < 41bp 0.463486394147778 0.725618931456911 NA NA prediction 0.451237862913821 Functional Gain - CYP17A1 ENSG00000148795 CDS Human protein_coding chr10:104590502 chr10:104590500 nonsynonymous SNV 0.998 5 19 hm6Am_associated_SNPs_3093 0 0 0 2 104590493 104590507 mRNA hsa-miR-18a C10orf26 miRanda miRanda
280 chr10 104590500 104590500 1 + G A COAD 104590502 + 104590482 104590522 41 CTTCCCTCCAGGCCTGGCGCACCTTGATCTTCACTTTGAAA CTTCCCTCCAGGCCTGGCACACCTTGATCTTCACTTTGAAA < 41bp 0.463486394147778 0.725618931456911 NA NA prediction 0.451237862913821 Functional Gain - CYP17A1 ENSG00000148795 CDS Human protein_coding chr10:104590502 chr10:104590500 nonsynonymous SNV 0.998 5 19 hm6Am_associated_SNPs_3093 0 0 0 2 104590493 104590507 mRNA hsa-miR-18b C10orf26 miRanda miRanda
281 chr9 35661243 35661243 1 - C T rs35234337 35661241 - 35661221 35661261 41 AGGCCCAGTTGTCCTTAGGCACCTAGTATGGGTGTGTACAA AGGCCCAGTTGTCCTTAGACACCTAGTATGGGTGTGTACAA < 41bp 0.559289419134287 0.784821461252958 NA NA prediction 0.451064084237342 Functional Gain - ARHGEF39;CCDC107 ENSG00000137135;ENSG00000159884 UTR3 Human other chr9:35661241 chr9:35661243 . . 0 19 hm6Am_associated_SNPs_3096 0 0 1 2 35661224 35661245 mRNA hsa-miR-362-3p C9orf100 miRanda miRanda
282 chr9 35661243 35661243 1 - C T rs35234337 35661241 - 35661221 35661261 41 AGGCCCAGTTGTCCTTAGGCACCTAGTATGGGTGTGTACAA AGGCCCAGTTGTCCTTAGACACCTAGTATGGGTGTGTACAA < 41bp 0.559289419134287 0.784821461252958 NA NA prediction 0.451064084237342 Functional Gain - ARHGEF39;CCDC107 ENSG00000137135;ENSG00000159884 UTR3 Human other chr9:35661241 chr9:35661243 . . 0 19 hm6Am_associated_SNPs_3096 0 0 1 2 35661224 35661246 mRNA hsa-miR-329 C9orf100 miRanda miRanda
283 chr12 9459878 9459878 1 + G A rs147430667 9459880 + 9459860 9459900 41 GTGGTGAAGGAATGCCGGGCAGTGGTCATTGCGGGGGGGAC GTGGTGAAGGAATGCCGGACAGTGGTCATTGCGGGGGGGAC < 41bp 0.464963922739671 0.724980447253299 NA NA prediction 0.449960894506598 Functional Gain - LOC642846 ENSG00000111788 ncRNA_exonic Human unprocessed_pseudogene chr12:9459880 chr12:9459878 . . 0 19 hm6Am_associated_SNPs_3114 0 0 1 1 9459865 9459887 mRNA hsa-miR-504 DDX12 miRanda miRanda
284 chr11 44995875 44995875 1 + G A rs11826918 44995877 + 44995857 44995897 41 GGCCTGGTTTTTCACAGGGCACCATTGAGACCACAGGAAGT GGCCTGGTTTTTCACAGGACACCATTGAGACCACAGGAAGT < 41bp 0.479756810146936 0.724087771055972 NA NA prediction 0.448175542111945 Functional Gain - LOC221122 ENSG00000254654 ncRNA_exonic Human lincRNA chr11:44995877 chr11:44995875 . . 0 19 hm6Am_associated_SNPs_3159 0 0 0 1 44995860 44995878 mRNA hsa-miR-874 LOC221122 miRanda miRanda
285 chr2 160604655 160604655 1 + G T BLCA 160604657 + 160604637 160604677 41 CGAGGAGATTGCTGTCACGCATAGCTTCTAGCATGTCATCT CGAGGAGATTGCTGTCACTCATAGCTTCTAGCATGTCATCT < 41bp 0.306229005534616 0.724068619168555 NA NA prediction 0.448137238337111 Functional Gain - MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160604657 chr2:160604655 nonsynonymous SNV 0.989 4 19 hm6Am_associated_SNPs_3160 0 0 1 1 160604634 160604655 mRNA hsa-miR-542-3p MARCH7 miRanda miRanda
286 chr17 1943562 1943562 1 + G A UCEC 1943564 + 1943544 1943584 41 AACACTATGACCACCAGCGCATGCAGGCTGCTCGCCAAGAA AACACTATGACCACCAGCACATGCAGGCTGCTCGCCAAGAA < 41bp 0.583767311192019 0.806893614675863 NA NA prediction 0.446252606967688 Functional Gain - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1943564 chr17:1943562 nonsynonymous SNV 0.848 1 19 hm6Am_associated_SNPs_3202 0 0 1 1 1943539 1943562 mRNA hsa-miR-138 DPH1 miRanda miRanda
287 chr15 79603705 79603705 1 + G T UCEC 79603707 + 79603687 79603727 41 GCTGCCGGACAACGCCAAGCAGTGCTTCCACGAGGAGGTGG GCTGCCGGACAACGCCAATCAGTGCTTCCACGAGGAGGTGG < 41bp 0.717226874062649 0.940310812698161 NA NA prediction 0.446167877271025 Functional Gain - TMED3 ENSG00000166557 CDS Human protein_coding chr15:79603707 chr15:79603705 nonsynonymous SNV 0.994 1 19 hm6Am_associated_SNPs_3205 0 0 1 1 79603692 79603716 mRNA hsa-miR-7 TMED3 miRanda miRanda
288 chr7 100553034 100553034 1 + G C rs28420153 100553033 + 100553013 100553053 41 CCAGCACCTTCTATGGTTCCAGTTGTGAGTTTGCTGTGGAA CCAGCACCTTCTATGGTTCCACTTGTGAGTTTGCTGTGGAA < 41bp 0.504777738891365 0.726927822818453 NA NA prediction 0.444300167854177 Functional Gain - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100553033 chr7:100553034 nonsynonymous SNV 0.000 0 22 hm6Am_associated_SNPs_3253 0 0 0 1 100553014 100553037 mRNA hsa-miR-191 MUC3A miRanda miRanda
289 chr1 70877188 70877188 1 + G T UCEC 70877190 + 70877170 70877210 41 TGTGGGCCAGGATCCAGAGCAATGGACCTCCAGGGCTGTAG TGTGGGCCAGGATCCAGATCAATGGACCTCCAGGGCTGTAG < 41bp 0.718882516184743 0.940780973093854 NA NA prediction 0.443796913818222 Functional Gain - CTH ENSG00000116761 CDS Human protein_coding chr1:70877190 chr1:70877188 nonsynonymous SNV 0.209 1 19 hm6Am_associated_SNPs_3261 0 0 1 1 70877181 70877205 mRNA hsa-miR-125a-5p CTH miRanda miRanda
290 chr15 76075468 76075468 1 + G A UCEC 76075470 + 76075450 76075490 41 GAGGCTGCGAAAGCAGGAGCAGAGGCTATGCAAGCAGGAGG GAGGCTGCGAAAGCAGGAACAGAGGCTATGCAAGCAGGAGG < 41bp 0.569164582984079 0.790751560428598 NA NA prediction 0.443173954889039 Functional Gain - MIR4313;UBE2Q2 ENSG00000187812 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:76075470 chr15:76075468 . . 0 19 hm6Am_associated_SNPs_3277 0 0 0 1 76075461 76075482 mRNA hsa-miR-153 LOC441728 miRanda miRanda
291 chr7 562409 562409 1 + G A rs62433356 562411 + 562391 562431 41 GGGAGGTGCTGGTGGGAAGCAAGGTGCACCTGGCGGCCTGG GGGAGGTGCTGGTGGGAAACAAGGTGCACCTGGCGGCCTGG < 41bp 0.477461969490509 0.721125189198453 NA NA prediction 0.442250378396906 Functional Gain - HRAT92 ENSG00000223855 ncRNA_exonic Human lincRNA chr7:562411 chr7:562409 . . 0 19 hm6Am_associated_SNPs_3296 0 0 0 2 562394 562416 lncRNA hsa-miR-3200-3p AC147651.1 miRanda starBase2
292 chr7 562409 562409 1 + G A rs62433356 562411 + 562391 562431 41 GGGAGGTGCTGGTGGGAAGCAAGGTGCACCTGGCGGCCTGG GGGAGGTGCTGGTGGGAAACAAGGTGCACCTGGCGGCCTGG < 41bp 0.477461969490509 0.721125189198453 NA NA prediction 0.442250378396906 Functional Gain - HRAT92 ENSG00000223855 ncRNA_exonic Human lincRNA chr7:562411 chr7:562409 . . 0 19 hm6Am_associated_SNPs_3296 0 0 0 2 562398 562419 lncRNA hsa-miR-500a-3p AC147651.1 miRanda starBase2
293 chr16 29913155 29913155 1 + G A SKCM 29913157 + 29913137 29913177 41 TGAGTGCCAACACCTTCGGCAATGCCGGCTTTTCCGTTCTC TGAGTGCCAACACCTTCGACAATGCCGGCTTTTCCGTTCTC < 41bp 0.57254749850322 0.793231980662073 NA NA prediction 0.441368964317706 Functional Gain - ASPHD1 ENSG00000174939 CDS Human protein_coding chr16:29913157 chr16:29913155 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3324 0 0 1 1 29913153 29913175 mRNA hsa-miR-191 ASPHD1 miRanda miRanda
294 chr15 25474031 25474031 1 + G A UCEC 25474033 + 25474013 25474053 41 AAACTCTGACCCTTCCTGGCACACTGGTCTCCTGCACTGAG AAACTCTGACCCTTCCTGACACACTGGTCTCCTGCACTGAG < 41bp 0.568066658370829 0.78827700939753 NA NA prediction 0.440420702053402 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25474033 chr15:25474031 . . 0 19 hm6Am_associated_SNPs_3350 0 0 0 2 25474031 25474052 mRNA hsa-miR-148a SNRPN miRanda miRanda
295 chr15 25474031 25474031 1 + G A UCEC 25474033 + 25474013 25474053 41 AAACTCTGACCCTTCCTGGCACACTGGTCTCCTGCACTGAG AAACTCTGACCCTTCCTGACACACTGGTCTCCTGCACTGAG < 41bp 0.568066658370829 0.78827700939753 NA NA prediction 0.440420702053402 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25474033 chr15:25474031 . . 0 19 hm6Am_associated_SNPs_3350 0 0 0 2 25474031 25474052 mRNA hsa-miR-148b SNRPN miRanda miRanda
296 chr3 119190284 119190284 1 + G C UCEC 119190286 + 119190266 119190306 41 TGTACCGGGAAAATGACTGCATGTTCCCCTCAAGGTAAGAG TGTACCGGGAAAATGACTCCATGTTCCCCTCAAGGTAAGAG < 41bp 0.415122446401544 0.720209470475996 NA NA prediction 0.440418940951992 Functional Gain - POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119190286 chr3:119190284 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3351 0 0 1 2 119190263 119190286 mRNA hsa-miR-103 KTELC1 miRanda miRanda
297 chr3 119190284 119190284 1 + G C UCEC 119190286 + 119190266 119190306 41 TGTACCGGGAAAATGACTGCATGTTCCCCTCAAGGTAAGAG TGTACCGGGAAAATGACTCCATGTTCCCCTCAAGGTAAGAG < 41bp 0.415122446401544 0.720209470475996 NA NA prediction 0.440418940951992 Functional Gain - POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119190286 chr3:119190284 nonsynonymous SNV 1.000 4 19 hm6Am_associated_SNPs_3351 0 0 1 2 119190263 119190286 mRNA hsa-miR-107 KTELC1 miRanda miRanda
298 chr17 43893833 43893833 1 + G A HNSC 43893835 + 43893815 43893855 41 GTCTCTGCCCCCAGGACTGCAGTGCAACGCATCCGTGGACC GTCTCTGCCCCCAGGACTACAGTGCAACGCATCCGTGGACC < 41bp 0.502764207275451 0.721987828049899 NA NA prediction 0.438447241548895 Functional Gain - CRHR1 ENSG00000120088 CDS Human protein_coding chr17:43893835 chr17:43893833 synonymous SNV . 0 19 hm6Am_associated_SNPs_3393 0 0 0 1 43893829 43893838 mRNA hsa-miR-217 CRHR1 miRanda miRanda
299 chr14 24517419 24517419 1 + G C LUAD 24517418 + 24517398 24517438 41 ATGATAAAGGCAGTGGTGCCAGAAATGGAGAAACGAGGGTA ATGATAAAGGCAGTGGTGCCACAAATGGAGAAACGAGGGTA < 41bp 0.516162924684299 0.735254746793856 NA NA prediction 0.438183644219114 Functional Gain - DHRS4L1 ENSG00000225766 ncRNA_exonic Human processed_transcript chr14:24517418 chr14:24517419 . . 0 22 hm6Am_associated_SNPs_3405 0 0 0 2 24517415 24517438 mRNA hsa-miR-10a DHRS4L1 miRanda miRanda
300 chr14 24517419 24517419 1 + G C LUAD 24517418 + 24517398 24517438 41 ATGATAAAGGCAGTGGTGCCAGAAATGGAGAAACGAGGGTA ATGATAAAGGCAGTGGTGCCACAAATGGAGAAACGAGGGTA < 41bp 0.516162924684299 0.735254746793856 NA NA prediction 0.438183644219114 Functional Gain - DHRS4L1 ENSG00000225766 ncRNA_exonic Human processed_transcript chr14:24517418 chr14:24517419 . . 0 22 hm6Am_associated_SNPs_3405 0 0 0 2 24517406 24517428 mRNA hsa-miR-136 DHRS4L1 miRanda miRanda
301 chrX 133988192 133988192 1 + G A STAD 133988194 + 133988174 133988214 41 ATTCGTCAGCTGAAATCGGCACTGTCACAAACTCTCCTGTG ATTCGTCAGCTGAAATCGACACTGTCACAAACTCTCCTGTG < 41bp 0.595246742229381 0.814207552171901 NA NA prediction 0.43792161988504 Functional Gain - FAM122C ENSG00000156500 CDS Human protein_coding chrX:133988194 chrX:133988192 nonsynonymous SNV 0.001 1 19 hm6Am_associated_SNPs_3414 0 0 0 2 133988177 133988202 mRNA hsa-miR-542-3p FAM122C miRanda miRanda
302 chrX 133988192 133988192 1 + G A STAD 133988194 + 133988174 133988214 41 ATTCGTCAGCTGAAATCGGCACTGTCACAAACTCTCCTGTG ATTCGTCAGCTGAAATCGACACTGTCACAAACTCTCCTGTG < 41bp 0.595246742229381 0.814207552171901 NA NA prediction 0.43792161988504 Functional Gain - FAM122C ENSG00000156500 CDS Human protein_coding chrX:133988194 chrX:133988192 nonsynonymous SNV 0.001 1 19 hm6Am_associated_SNPs_3414 0 0 0 2 133988183 133988204 mRNA hsa-miR-758 FAM122C miRanda miRanda
303 chr1 33765404 33765404 1 + G C rs76058787 33765403 + 33765383 33765423 41 GCTGCCCTGAAGACCACCCCAGTCTACCTCGGTGCTGGCCA GCTGCCCTGAAGACCACCCCACTCTACCTCGGTGCTGGCCA < 41bp 0.564012330122165 0.782555081547182 NA NA prediction 0.437085502850034 Functional Gain - ZNF362 ENSG00000256142 ncRNA_exonic Human other chr1:33765403 chr1:33765404 . . 0 22 hm6Am_associated_SNPs_3434 0 0 1 9 33765390 33765413 mRNA hsa-let-7a ZNF362 miRanda miRanda
304 chr1 33765404 33765404 1 + G C rs76058787 33765403 + 33765383 33765423 41 GCTGCCCTGAAGACCACCCCAGTCTACCTCGGTGCTGGCCA GCTGCCCTGAAGACCACCCCACTCTACCTCGGTGCTGGCCA < 41bp 0.564012330122165 0.782555081547182 NA NA prediction 0.437085502850034 Functional Gain - ZNF362 ENSG00000256142 ncRNA_exonic Human other chr1:33765403 chr1:33765404 . . 0 22 hm6Am_associated_SNPs_3434 0 0 1 9 33765394 33765413 mRNA hsa-let-7b ZNF362 miRanda miRanda
305 chr1 33765404 33765404 1 + G C rs76058787 33765403 + 33765383 33765423 41 GCTGCCCTGAAGACCACCCCAGTCTACCTCGGTGCTGGCCA GCTGCCCTGAAGACCACCCCACTCTACCTCGGTGCTGGCCA < 41bp 0.564012330122165 0.782555081547182 NA NA prediction 0.437085502850034 Functional Gain - ZNF362 ENSG00000256142 ncRNA_exonic Human other chr1:33765403 chr1:33765404 . . 0 22 hm6Am_associated_SNPs_3434 0 0 1 9 33765390 33765413 mRNA hsa-let-7c ZNF362 miRanda miRanda
306 chr1 33765404 33765404 1 + G C rs76058787 33765403 + 33765383 33765423 41 GCTGCCCTGAAGACCACCCCAGTCTACCTCGGTGCTGGCCA GCTGCCCTGAAGACCACCCCACTCTACCTCGGTGCTGGCCA < 41bp 0.564012330122165 0.782555081547182 NA NA prediction 0.437085502850034 Functional Gain - ZNF362 ENSG00000256142 ncRNA_exonic Human other chr1:33765403 chr1:33765404 . . 0 22 hm6Am_associated_SNPs_3434 0 0 1 9 33765390 33765413 mRNA hsa-let-7d ZNF362 miRanda miRanda
307 chr1 33765404 33765404 1 + G C rs76058787 33765403 + 33765383 33765423 41 GCTGCCCTGAAGACCACCCCAGTCTACCTCGGTGCTGGCCA GCTGCCCTGAAGACCACCCCACTCTACCTCGGTGCTGGCCA < 41bp 0.564012330122165 0.782555081547182 NA NA prediction 0.437085502850034 Functional Gain - ZNF362 ENSG00000256142 ncRNA_exonic Human other chr1:33765403 chr1:33765404 . . 0 22 hm6Am_associated_SNPs_3434 0 0 1 9 33765389 33765413 mRNA hsa-let-7e ZNF362 miRanda miRanda
308 chr1 33765404 33765404 1 + G C rs76058787 33765403 + 33765383 33765423 41 GCTGCCCTGAAGACCACCCCAGTCTACCTCGGTGCTGGCCA GCTGCCCTGAAGACCACCCCACTCTACCTCGGTGCTGGCCA < 41bp 0.564012330122165 0.782555081547182 NA NA prediction 0.437085502850034 Functional Gain - ZNF362 ENSG00000256142 ncRNA_exonic Human other chr1:33765403 chr1:33765404 . . 0 22 hm6Am_associated_SNPs_3434 0 0 1 9 33765392 33765413 mRNA hsa-let-7f ZNF362 miRanda miRanda
309 chr1 33765404 33765404 1 + G C rs76058787 33765403 + 33765383 33765423 41 GCTGCCCTGAAGACCACCCCAGTCTACCTCGGTGCTGGCCA GCTGCCCTGAAGACCACCCCACTCTACCTCGGTGCTGGCCA < 41bp 0.564012330122165 0.782555081547182 NA NA prediction 0.437085502850034 Functional Gain - ZNF362 ENSG00000256142 ncRNA_exonic Human other chr1:33765403 chr1:33765404 . . 0 22 hm6Am_associated_SNPs_3434 0 0 1 9 33765389 33765413 mRNA hsa-miR-98 ZNF362 miRanda miRanda
310 chr1 33765404 33765404 1 + G C rs76058787 33765403 + 33765383 33765423 41 GCTGCCCTGAAGACCACCCCAGTCTACCTCGGTGCTGGCCA GCTGCCCTGAAGACCACCCCACTCTACCTCGGTGCTGGCCA < 41bp 0.564012330122165 0.782555081547182 NA NA prediction 0.437085502850034 Functional Gain - ZNF362 ENSG00000256142 ncRNA_exonic Human other chr1:33765403 chr1:33765404 . . 0 22 hm6Am_associated_SNPs_3434 0 0 1 9 33765392 33765413 mRNA hsa-let-7g ZNF362 miRanda miRanda
311 chr1 33765404 33765404 1 + G C rs76058787 33765403 + 33765383 33765423 41 GCTGCCCTGAAGACCACCCCAGTCTACCTCGGTGCTGGCCA GCTGCCCTGAAGACCACCCCACTCTACCTCGGTGCTGGCCA < 41bp 0.564012330122165 0.782555081547182 NA NA prediction 0.437085502850034 Functional Gain - ZNF362 ENSG00000256142 ncRNA_exonic Human other chr1:33765403 chr1:33765404 . . 0 22 hm6Am_associated_SNPs_3434 0 0 1 9 33765395 33765413 mRNA hsa-let-7i ZNF362 miRanda miRanda
312 chr11 6413202 6413202 1 + G A LUSC 6413204 + 6413184 6413224 41 GCCCTGACCACCGTCACAGCACTTGTGAGGAAGTTCCTGGG GCCCTGACCACCGTCACAACACTTGTGAGGAAGTTCCTGGG < 41bp 0.591749766582093 0.810152795990787 NA NA prediction 0.436806058817389 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413204 chr11:6413202 nonsynonymous SNV 0.862 1 19 hm6Am_associated_SNPs_3446 0 0 0 12 6413188 6413208 mRNA hsa-miR-302a SMPD1 miRanda miRanda
313 chr11 6413202 6413202 1 + G A LUSC 6413204 + 6413184 6413224 41 GCCCTGACCACCGTCACAGCACTTGTGAGGAAGTTCCTGGG GCCCTGACCACCGTCACAACACTTGTGAGGAAGTTCCTGGG < 41bp 0.591749766582093 0.810152795990787 NA NA prediction 0.436806058817389 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413204 chr11:6413202 nonsynonymous SNV 0.862 1 19 hm6Am_associated_SNPs_3446 0 0 0 12 6413184 6413208 mRNA hsa-miR-302b SMPD1 miRanda miRanda
314 chr11 6413202 6413202 1 + G A LUSC 6413204 + 6413184 6413224 41 GCCCTGACCACCGTCACAGCACTTGTGAGGAAGTTCCTGGG GCCCTGACCACCGTCACAACACTTGTGAGGAAGTTCCTGGG < 41bp 0.591749766582093 0.810152795990787 NA NA prediction 0.436806058817389 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413204 chr11:6413202 nonsynonymous SNV 0.862 1 19 hm6Am_associated_SNPs_3446 0 0 0 12 6413184 6413208 mRNA hsa-miR-302c SMPD1 miRanda miRanda
315 chr11 6413202 6413202 1 + G A LUSC 6413204 + 6413184 6413224 41 GCCCTGACCACCGTCACAGCACTTGTGAGGAAGTTCCTGGG GCCCTGACCACCGTCACAACACTTGTGAGGAAGTTCCTGGG < 41bp 0.591749766582093 0.810152795990787 NA NA prediction 0.436806058817389 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413204 chr11:6413202 nonsynonymous SNV 0.862 1 19 hm6Am_associated_SNPs_3446 0 0 0 12 6413186 6413208 mRNA hsa-miR-302d SMPD1 miRanda miRanda
316 chr11 6413202 6413202 1 + G A LUSC 6413204 + 6413184 6413224 41 GCCCTGACCACCGTCACAGCACTTGTGAGGAAGTTCCTGGG GCCCTGACCACCGTCACAACACTTGTGAGGAAGTTCCTGGG < 41bp 0.591749766582093 0.810152795990787 NA NA prediction 0.436806058817389 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413204 chr11:6413202 nonsynonymous SNV 0.862 1 19 hm6Am_associated_SNPs_3446 0 0 0 12 6413186 6413208 mRNA hsa-miR-372 SMPD1 miRanda miRanda
317 chr11 6413202 6413202 1 + G A LUSC 6413204 + 6413184 6413224 41 GCCCTGACCACCGTCACAGCACTTGTGAGGAAGTTCCTGGG GCCCTGACCACCGTCACAACACTTGTGAGGAAGTTCCTGGG < 41bp 0.591749766582093 0.810152795990787 NA NA prediction 0.436806058817389 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413204 chr11:6413202 nonsynonymous SNV 0.862 1 19 hm6Am_associated_SNPs_3446 0 0 0 12 6413186 6413208 mRNA hsa-miR-373 SMPD1 miRanda miRanda
318 chr11 6413202 6413202 1 + G A LUSC 6413204 + 6413184 6413224 41 GCCCTGACCACCGTCACAGCACTTGTGAGGAAGTTCCTGGG GCCCTGACCACCGTCACAACACTTGTGAGGAAGTTCCTGGG < 41bp 0.591749766582093 0.810152795990787 NA NA prediction 0.436806058817389 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413204 chr11:6413202 nonsynonymous SNV 0.862 1 19 hm6Am_associated_SNPs_3446 0 0 0 12 6413188 6413208 mRNA hsa-miR-520e SMPD1 miRanda miRanda
319 chr11 6413202 6413202 1 + G A LUSC 6413204 + 6413184 6413224 41 GCCCTGACCACCGTCACAGCACTTGTGAGGAAGTTCCTGGG GCCCTGACCACCGTCACAACACTTGTGAGGAAGTTCCTGGG < 41bp 0.591749766582093 0.810152795990787 NA NA prediction 0.436806058817389 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413204 chr11:6413202 nonsynonymous SNV 0.862 1 19 hm6Am_associated_SNPs_3446 0 0 0 12 6413186 6413208 mRNA hsa-miR-520a-3p SMPD1 miRanda miRanda
320 chr11 6413202 6413202 1 + G A LUSC 6413204 + 6413184 6413224 41 GCCCTGACCACCGTCACAGCACTTGTGAGGAAGTTCCTGGG GCCCTGACCACCGTCACAACACTTGTGAGGAAGTTCCTGGG < 41bp 0.591749766582093 0.810152795990787 NA NA prediction 0.436806058817389 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413204 chr11:6413202 nonsynonymous SNV 0.862 1 19 hm6Am_associated_SNPs_3446 0 0 0 12 6413188 6413208 mRNA hsa-miR-520b SMPD1 miRanda miRanda
321 chr11 6413202 6413202 1 + G A LUSC 6413204 + 6413184 6413224 41 GCCCTGACCACCGTCACAGCACTTGTGAGGAAGTTCCTGGG GCCCTGACCACCGTCACAACACTTGTGAGGAAGTTCCTGGG < 41bp 0.591749766582093 0.810152795990787 NA NA prediction 0.436806058817389 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413204 chr11:6413202 nonsynonymous SNV 0.862 1 19 hm6Am_associated_SNPs_3446 0 0 0 12 6413187 6413208 mRNA hsa-miR-520c-3p SMPD1 miRanda miRanda
322 chr11 6413202 6413202 1 + G A LUSC 6413204 + 6413184 6413224 41 GCCCTGACCACCGTCACAGCACTTGTGAGGAAGTTCCTGGG GCCCTGACCACCGTCACAACACTTGTGAGGAAGTTCCTGGG < 41bp 0.591749766582093 0.810152795990787 NA NA prediction 0.436806058817389 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413204 chr11:6413202 nonsynonymous SNV 0.862 1 19 hm6Am_associated_SNPs_3446 0 0 0 12 6413186 6413208 mRNA hsa-miR-520d-3p SMPD1 miRanda miRanda
323 chr11 6413202 6413202 1 + G A LUSC 6413204 + 6413184 6413224 41 GCCCTGACCACCGTCACAGCACTTGTGAGGAAGTTCCTGGG GCCCTGACCACCGTCACAACACTTGTGAGGAAGTTCCTGGG < 41bp 0.591749766582093 0.810152795990787 NA NA prediction 0.436806058817389 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413204 chr11:6413202 nonsynonymous SNV 0.862 1 19 hm6Am_associated_SNPs_3446 0 0 0 12 6413192 6413208 mRNA hsa-miR-302e SMPD1 miRanda miRanda
324 chr5 7878111 7878111 1 + G A UCEC 7878113 + 7878093 7878133 41 CTGGCCAGCCCTCAGAAAGCATTTTAGGTCAAGCAGAGGAC CTGGCCAGCCCTCAGAAAACATTTTAGGTCAAGCAGAGGAC < 41bp 0.462396250909024 0.717445087998425 NA NA prediction 0.43489017599685 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7878113 chr5:7878111 synonymous SNV . 0 19 hm6Am_associated_SNPs_3483 0 0 1 2 7878105 7878124 mRNA hsa-miR-192 MTRR miRanda miRanda
325 chr5 7878111 7878111 1 + G A UCEC 7878113 + 7878093 7878133 41 CTGGCCAGCCCTCAGAAAGCATTTTAGGTCAAGCAGAGGAC CTGGCCAGCCCTCAGAAAACATTTTAGGTCAAGCAGAGGAC < 41bp 0.462396250909024 0.717445087998425 NA NA prediction 0.43489017599685 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7878113 chr5:7878111 synonymous SNV . 0 19 hm6Am_associated_SNPs_3483 0 0 1 2 7878105 7878124 mRNA hsa-miR-215 MTRR miRanda miRanda
326 chr8 67372555 67372555 1 + G A HNSC 67372557 + 67372537 67372577 41 TTCTAGGAGCCGACACCCGCACTGCCAGGATCCAAGATGCA TTCTAGGAGCCGACACCCACACTGCCAGGATCCAAGATGCA < 41bp 0.603960973097323 0.821167356043187 NA NA prediction 0.434412765891728 Functional Gain - ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67372557 chr8:67372555 nonsynonymous SNV 0.665 0 19 hm6Am_associated_SNPs_3489 0 0 0 4 67372543 67372563 mRNA hsa-miR-34a ADHFE1 miRanda miRanda
327 chr8 67372555 67372555 1 + G A HNSC 67372557 + 67372537 67372577 41 TTCTAGGAGCCGACACCCGCACTGCCAGGATCCAAGATGCA TTCTAGGAGCCGACACCCACACTGCCAGGATCCAAGATGCA < 41bp 0.603960973097323 0.821167356043187 NA NA prediction 0.434412765891728 Functional Gain - ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67372557 chr8:67372555 nonsynonymous SNV 0.665 0 19 hm6Am_associated_SNPs_3489 0 0 0 4 67372543 67372563 mRNA hsa-miR-34c-5p ADHFE1 miRanda miRanda
328 chr8 67372555 67372555 1 + G A HNSC 67372557 + 67372537 67372577 41 TTCTAGGAGCCGACACCCGCACTGCCAGGATCCAAGATGCA TTCTAGGAGCCGACACCCACACTGCCAGGATCCAAGATGCA < 41bp 0.603960973097323 0.821167356043187 NA NA prediction 0.434412765891728 Functional Gain - ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67372557 chr8:67372555 nonsynonymous SNV 0.665 0 19 hm6Am_associated_SNPs_3489 0 0 0 4 67372543 67372563 mRNA hsa-miR-449a ADHFE1 miRanda miRanda
329 chr8 67372555 67372555 1 + G A HNSC 67372557 + 67372537 67372577 41 TTCTAGGAGCCGACACCCGCACTGCCAGGATCCAAGATGCA TTCTAGGAGCCGACACCCACACTGCCAGGATCCAAGATGCA < 41bp 0.603960973097323 0.821167356043187 NA NA prediction 0.434412765891728 Functional Gain - ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67372557 chr8:67372555 nonsynonymous SNV 0.665 0 19 hm6Am_associated_SNPs_3489 0 0 0 4 67372543 67372563 mRNA hsa-miR-449b ADHFE1 miRanda miRanda
330 chr4 15688071 15688071 1 + G A rs548464759 15688073 + 15688053 15688093 41 AGTCTCTTTCATCATCAAGCAGACATACTCAAGGTACCAAC AGTCTCTTTCATCATCAAACAGACATACTCAAGGTACCAAC < 41bp 0.538646817513294 0.755074434333527 NA NA prediction 0.432855233640464 Functional Gain - FAM200B ENSG00000237765 UTR5 Human protein_coding chr4:15688073 chr4:15688071 . . 0 19 hm6Am_associated_SNPs_3528 0 0 1 6 15688071 15688085 mRNA hsa-miR-25 FAM200B miRanda miRanda
331 chr4 15688071 15688071 1 + G A rs548464759 15688073 + 15688053 15688093 41 AGTCTCTTTCATCATCAAGCAGACATACTCAAGGTACCAAC AGTCTCTTTCATCATCAAACAGACATACTCAAGGTACCAAC < 41bp 0.538646817513294 0.755074434333527 NA NA prediction 0.432855233640464 Functional Gain - FAM200B ENSG00000237765 UTR5 Human protein_coding chr4:15688073 chr4:15688071 . . 0 19 hm6Am_associated_SNPs_3528 0 0 1 6 15688071 15688085 mRNA hsa-miR-32 FAM200B miRanda miRanda
332 chr4 15688071 15688071 1 + G A rs548464759 15688073 + 15688053 15688093 41 AGTCTCTTTCATCATCAAGCAGACATACTCAAGGTACCAAC AGTCTCTTTCATCATCAAACAGACATACTCAAGGTACCAAC < 41bp 0.538646817513294 0.755074434333527 NA NA prediction 0.432855233640464 Functional Gain - FAM200B ENSG00000237765 UTR5 Human protein_coding chr4:15688073 chr4:15688071 . . 0 19 hm6Am_associated_SNPs_3528 0 0 1 6 15688070 15688085 mRNA hsa-miR-96 FAM200B miRanda miRanda
333 chr4 15688071 15688071 1 + G A rs548464759 15688073 + 15688053 15688093 41 AGTCTCTTTCATCATCAAGCAGACATACTCAAGGTACCAAC AGTCTCTTTCATCATCAAACAGACATACTCAAGGTACCAAC < 41bp 0.538646817513294 0.755074434333527 NA NA prediction 0.432855233640464 Functional Gain - FAM200B ENSG00000237765 UTR5 Human protein_coding chr4:15688073 chr4:15688071 . . 0 19 hm6Am_associated_SNPs_3528 0 0 1 6 15688069 15688085 mRNA hsa-miR-182 FAM200B miRanda miRanda
334 chr4 15688071 15688071 1 + G A rs548464759 15688073 + 15688053 15688093 41 AGTCTCTTTCATCATCAAGCAGACATACTCAAGGTACCAAC AGTCTCTTTCATCATCAAACAGACATACTCAAGGTACCAAC < 41bp 0.538646817513294 0.755074434333527 NA NA prediction 0.432855233640464 Functional Gain - FAM200B ENSG00000237765 UTR5 Human protein_coding chr4:15688073 chr4:15688071 . . 0 19 hm6Am_associated_SNPs_3528 0 0 1 6 15688061 15688083 mRNA hsa-miR-190 FAM200B miRanda miRanda
335 chr4 15688071 15688071 1 + G A rs548464759 15688073 + 15688053 15688093 41 AGTCTCTTTCATCATCAAGCAGACATACTCAAGGTACCAAC AGTCTCTTTCATCATCAAACAGACATACTCAAGGTACCAAC < 41bp 0.538646817513294 0.755074434333527 NA NA prediction 0.432855233640464 Functional Gain - FAM200B ENSG00000237765 UTR5 Human protein_coding chr4:15688073 chr4:15688071 . . 0 19 hm6Am_associated_SNPs_3528 0 0 1 6 15688070 15688085 mRNA hsa-miR-1271 FAM200B miRanda miRanda
336 chr7 99305525 99305525 1 + G T LAML 99305527 + 99305507 99305547 41 AGCAAACCTCATGCCAATGCAGTTTCTGGGTCCACTTCCAA AGCAAACCTCATGCCAATTCAGTTTCTGGGTCCACTTCCAA < 41bp 0.298832580509835 0.716132801004578 NA NA prediction 0.432265602009155 Functional Gain - CYP3A7;CYP3A7-CYP3A51P ENSG00000160870 CDS Human protein_coding chr7:99305527 chr7:99305525 stopgain 0.835 1 19 hm6Am_associated_SNPs_3538 0 0 0 1 99305510 99305530 mRNA hsa-miR-217 ZNF498 miRanda miRanda
337 chr2 111020268 111020268 1 + G A UCEC 111020270 + 111020250 111020290 41 TAGACAACGCAGGTTGCCGCATACTTCTTTATTTGTGTAGA TAGACAACGCAGGTTGCCACATACTTCTTTATTTGTGTAGA < 41bp 0.569670881972901 0.7843234879548 NA NA prediction 0.429305211963799 Functional Gain - LOC100507334 ENSG00000261760 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:111020270 chr2:111020268 . . 0 19 hm6Am_associated_SNPs_3591 0 0 0 1 111020259 111020280 mRNA hsa-miR-186 LOC440895 miRanda miRanda
338 chr13 42763216 42763216 1 + G A BLCA 42763218 + 42763198 42763238 41 ACAACTGCTGCAGGCTTTGCACACAGATTCCCAGGCTGCGC ACAACTGCTGCAGGCTTTACACACAGATTCCCAGGCTGCGC < 41bp 0.457316906149283 0.714203529387802 NA NA prediction 0.428407058775603 Functional Gain - DGKH ENSG00000102780 CDS Human protein_coding chr13:42763218 chr13:42763216 synonymous SNV . 0 19 hm6Am_associated_SNPs_3604 0 0 1 2 42763199 42763220 mRNA hsa-miR-19a DGKH miRanda miRanda
339 chr13 42763216 42763216 1 + G A BLCA 42763218 + 42763198 42763238 41 ACAACTGCTGCAGGCTTTGCACACAGATTCCCAGGCTGCGC ACAACTGCTGCAGGCTTTACACACAGATTCCCAGGCTGCGC < 41bp 0.457316906149283 0.714203529387802 NA NA prediction 0.428407058775603 Functional Gain - DGKH ENSG00000102780 CDS Human protein_coding chr13:42763218 chr13:42763216 synonymous SNV . 0 19 hm6Am_associated_SNPs_3604 0 0 1 2 42763199 42763220 mRNA hsa-miR-19b DGKH miRanda miRanda
340 chr4 672747 672747 1 + G A SKCM 672749 + 672729 672769 41 CCTGACCTTGGTCCCCAGGCATTCACACTCATGGATCAGAA CCTGACCTTGGTCCCCAGACATTCACACTCATGGATCAGAA < 41bp 0.600579382930622 0.814250253478287 NA NA prediction 0.42734174109533 Functional Gain - MYL5 ENSG00000215375 CDS Human protein_coding chr4:672749 chr4:672747 nonsynonymous SNV 0.228 1 19 hm6Am_associated_SNPs_3628 0 0 0 1 672747 672752 mRNA hsa-miR-365 MYL5 miRanda miRanda
341 chr1 246939881 246939881 1 + G A COAD 246939883 + 246939863 246939903 41 CAAGTGATGCTTTGAGAAGCACGTTCTCCTCTCTCAGGGCT CAAGTGATGCTTTGAGAAACACGTTCTCCTCTCTCAGGGCT < 41bp 0.605727869150711 0.819177190876441 NA NA prediction 0.426898643451461 Functional Gain - SCCPDH;LINC01341 ENSG00000223519;ENSG00000227953 ncRNA_exonic Human other chr1:246939883 chr1:246939881 . . 0 19 hm6Am_associated_SNPs_3640 0 0 1 3 246939881 246939902 mRNA hsa-miR-125b LOC149134 miRanda miRanda
342 chr1 246939881 246939881 1 + G A COAD 246939883 + 246939863 246939903 41 CAAGTGATGCTTTGAGAAGCACGTTCTCCTCTCTCAGGGCT CAAGTGATGCTTTGAGAAACACGTTCTCCTCTCTCAGGGCT < 41bp 0.605727869150711 0.819177190876441 NA NA prediction 0.426898643451461 Functional Gain - SCCPDH;LINC01341 ENSG00000223519;ENSG00000227953 ncRNA_exonic Human other chr1:246939883 chr1:246939881 . . 0 19 hm6Am_associated_SNPs_3640 0 0 1 3 246939879 246939902 mRNA hsa-miR-125a-5p LOC149134 miRanda miRanda
343 chr1 246939881 246939881 1 + G A COAD 246939883 + 246939863 246939903 41 CAAGTGATGCTTTGAGAAGCACGTTCTCCTCTCTCAGGGCT CAAGTGATGCTTTGAGAAACACGTTCTCCTCTCTCAGGGCT < 41bp 0.605727869150711 0.819177190876441 NA NA prediction 0.426898643451461 Functional Gain - SCCPDH;LINC01341 ENSG00000223519;ENSG00000227953 ncRNA_exonic Human other chr1:246939883 chr1:246939881 . . 0 19 hm6Am_associated_SNPs_3640 0 0 1 3 246939869 246939891 mRNA hsa-miR-146b-5p LOC149134 miRanda miRanda
344 chr15 28991195 28991195 1 + G C rs557087997 28991194 + 28991174 28991214 41 CCTGGGCCACAGCAATTCCCAGGTTGGAAAAACTTAAGCTA CCTGGGCCACAGCAATTCCCACGTTGGAAAAACTTAAGCTA < 41bp 0.530921549742355 0.744175362904213 NA NA prediction 0.426507626323716 Functional Gain - WHAMMP2 ENSG00000248334 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28991194 chr15:28991195 . . 0 22 hm6Am_associated_SNPs_3646 0 0 0 1 28991180 28991199 mRNA hsa-miR-490-3p WHAMML2 miRanda miRanda
345 chrX 149761086 149761086 1 + G T LUAD 149761088 + 149761068 149761108 41 GTTTCCAGGATGGCTTCTGCATCAACTTCTAAATATAATTC GTTTCCAGGATGGCTTCTTCATCAACTTCTAAATATAATTC < 41bp 0.310022517220177 0.713193083118265 NA NA prediction 0.42638616623653 Functional Gain - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149761088 chrX:149761086 nonsynonymous SNV 1.000 1 19 hm6Am_associated_SNPs_3649 0 0 1 1 149761070 149761091 mRNA hsa-miR-383 MTM1 miRanda miRanda
346 chr17 42800344 42800344 1 + G A UCEC 42800346 + 42800326 42800366 41 ACTTGGATCTGCCTGCTGGCAAGAATCTCCAGTTTTTGACG ACTTGGATCTGCCTGCTGACAAGAATCTCCAGTTTTTGACG < 41bp 0.487932430635919 0.71312811755601 NA NA prediction 0.42625623511202 Functional Gain - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42800346 chr17:42800344 nonsynonymous SNV 0.999 2 19 hm6Am_associated_SNPs_3652 0 0 1 1 42800323 42800344 mRNA hsa-miR-214 DBF4B miRanda miRanda
347 chrX 134483146 134483146 1 + G T UCEC 134483144 + 134483124 134483164 41 CCAGGTAATGGGACCTGCCCAGGAGGCCCCAGTAGCAGAGG CCAGGTAATGGGACCTGCCCAGTAGGCCCCAGTAGCAGAGG < 41bp 0.496869915805048 0.712889864766695 NA NA prediction 0.42577972953339 Functional Gain - ZNF449 ENSG00000173275 CDS Human protein_coding chrX:134483144 chrX:134483146 stopgain 0.061 0 23 hm6Am_associated_SNPs_3662 0 0 0 1 134483139 134483159 mRNA hsa-miR-326 ZNF449 miRanda miRanda
348 chr17 7125936 7125936 1 + G C rs11870841 7125935 + 7125915 7125955 41 GAAGGAGCAGTTTTTCCCCCAGTGACAACCTGTTGAACACA GAAGGAGCAGTTTTTCCCCCACTGACAACCTGTTGAACACA < 41bp 0.544906687085995 0.757270522419661 NA NA prediction 0.424727670667332 Functional Gain - ACADVL ENSG00000072778 intronic Human protein_coding chr17:7125935 chr17:7125936 . . 0 22 hm6Am_associated_SNPs_3685 0 0 1 1 7125929 7125951 mRNA hsa-miR-421 ACADVL miRanda miRanda
349 chr1 148928324 148928324 1 + G A rs587645399 148928326 + 148928306 148928346 41 CAAAGGCACAGCGCGGGCGCAGGCGCCCAGAGGCGCACAGG CAAAGGCACAGCGCGGGCACAGGCGCCCAGAGGCGCACAGG < 41bp 0.463826537158163 0.712071447684095 NA NA prediction 0.424142895368191 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148928326 chr1:148928324 . . 0 19 hm6Am_associated_SNPs_3699 0 0 1 2 148928315 148928338 mRNA hsa-miR-330-5p LOC645166 miRanda miRanda
350 chr1 148928324 148928324 1 + G A rs587645399 148928326 + 148928306 148928346 41 CAAAGGCACAGCGCGGGCGCAGGCGCCCAGAGGCGCACAGG CAAAGGCACAGCGCGGGCACAGGCGCCCAGAGGCGCACAGG < 41bp 0.463826537158163 0.712071447684095 NA NA prediction 0.424142895368191 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148928326 chr1:148928324 . . 0 19 hm6Am_associated_SNPs_3699 0 0 1 2 148928319 148928338 mRNA hsa-miR-326 LOC645166 miRanda miRanda
351 chr11 66034372 66034372 1 + G A COAD 66034374 + 66034354 66034394 41 CAGGTCTCTCTGACAGCCGCACTCTCAGCTCCAGCTCCATG CAGGTCTCTCTGACAGCCACACTCTCAGCTCCAGCTCCATG < 41bp 0.453752365969372 0.710808930388392 NA NA prediction 0.421617860776784 Functional Gain - KLC2 ENSG00000174996 CDS Human protein_coding chr11:66034374 chr11:66034372 nonsynonymous SNV 1.000 5 19 hm6Am_associated_SNPs_3763 0 0 1 2 66034367 66034388 mRNA hsa-miR-378 KLC2 miRanda miRanda
352 chr11 66034372 66034372 1 + G A COAD 66034374 + 66034354 66034394 41 CAGGTCTCTCTGACAGCCGCACTCTCAGCTCCAGCTCCATG CAGGTCTCTCTGACAGCCACACTCTCAGCTCCAGCTCCATG < 41bp 0.453752365969372 0.710808930388392 NA NA prediction 0.421617860776784 Functional Gain - KLC2 ENSG00000174996 CDS Human protein_coding chr11:66034374 chr11:66034372 nonsynonymous SNV 1.000 5 19 hm6Am_associated_SNPs_3763 0 0 1 2 66034366 66034388 mRNA hsa-miR-422a KLC2 miRanda miRanda
353 chr17 25913760 25913760 1 + G A rs2945374 25913762 + 25913742 25913782 41 AGATGGAGGCGGTGCTTGGCACATACACCACCTCACTGCCC AGATGGAGGCGGTGCTTGACACATACACCACCTCACTGCCC < 41bp 0.600447836331951 0.811008360337479 NA NA prediction 0.421121048011057 Functional Gain - KSR1 ENSG00000141068 intronic Human protein_coding chr17:25913762 chr17:25913760 . . 0 19 hm6Am_associated_SNPs_3776 0 0 1 1 25913742 25913766 mRNA hsa-miR-455-5p KSR1 miRanda miRanda
354 chr3 177616152 177616152 1 + G A rs115178306 177616154 + 177616134 177616174 41 GCTGGGGCTGTGCACTCCGCAGAGCTGGGGGGGGCCAGGAA GCTGGGGCTGTGCACTCCACAGAGCTGGGGGGGGCCAGGAA < 41bp 0.595207020654605 0.804772396099734 NA NA prediction 0.419130750890258 Functional Gain - LINC02015 ENSG00000231574 ncRNA_exonic Human lincRNA chr3:177616154 chr3:177616152 . . 0 19 hm6Am_associated_SNPs_3825 0 0 0 2 177616136 177616159 lncRNA hsa-miR-3194-3p LINC02015 miRanda starBase2
355 chr3 177616152 177616152 1 + G A rs115178306 177616154 + 177616134 177616174 41 GCTGGGGCTGTGCACTCCGCAGAGCTGGGGGGGGCCAGGAA GCTGGGGCTGTGCACTCCACAGAGCTGGGGGGGGCCAGGAA < 41bp 0.595207020654605 0.804772396099734 NA NA prediction 0.419130750890258 Functional Gain - LINC02015 ENSG00000231574 ncRNA_exonic Human lincRNA chr3:177616154 chr3:177616152 . . 0 19 hm6Am_associated_SNPs_3825 0 0 0 2 177616143 177616165 lncRNA hsa-miR-361-3p LINC02015 miRanda starBase2
356 chr9 66554597 66554597 1 + G T UCEC 66554595 + 66554575 66554615 41 TGGCAGGCATTCAGATCTCCAAGAATAGAGGATTAGGAGAG TGGCAGGCATTCAGATCTCCAATAATAGAGGATTAGGAGAG < 41bp 0.497800336530533 0.709488318645235 NA NA prediction 0.41897663729047 Functional Gain - LOC728673 ENSG00000170161 ncRNA_exonic Human lincRNA chr9:66554595 chr9:66554597 . . 0 23 hm6Am_associated_SNPs_3827 0 0 0 1 66554577 66554598 lncRNA hsa-miR-432-5p AL512625.1 miRanda starBase2
357 chr11 65190565 65190565 1 + G A rs112799104 65190567 + 65190547 65190587 41 TGGGAGGGCGCCGCTCTTGCATAGCTGAGCGAGCCCGGGTG TGGGAGGGCGCCGCTCTTACATAGCTGAGCGAGCCCGGGTG < 41bp 0.567353532997689 0.776695166079029 NA NA prediction 0.41868326616268 Functional Gain - NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190567 chr11:65190565 . . 0 19 hm6Am_associated_SNPs_3837 0 0 1 1 65190544 65190566 lncRNA hsa-miR-335-5p NEAT1 miRanda starBase2
358 chr1 26752814 26752814 1 + G C HNSC 26752813 + 26752793 26752833 41 CAAGAAGTGCCACTTCTGCCAGAGCATCAGCCATATGGTAG CAAGAAGTGCCACTTCTGCCACAGCATCAGCCATATGGTAG < 41bp 0.615736381349045 0.825045660054013 NA NA prediction 0.418618557409937 Functional Gain - LIN28A ENSG00000131914 CDS Human protein_coding chr1:26752813 chr1:26752814 nonsynonymous SNV 1.000 3 22 hm6Am_associated_SNPs_3838 0 0 1 2 26752811 26752835 mRNA hsa-miR-221 LIN28A miRanda miRanda
359 chr1 26752814 26752814 1 + G C HNSC 26752813 + 26752793 26752833 41 CAAGAAGTGCCACTTCTGCCAGAGCATCAGCCATATGGTAG CAAGAAGTGCCACTTCTGCCACAGCATCAGCCATATGGTAG < 41bp 0.615736381349045 0.825045660054013 NA NA prediction 0.418618557409937 Functional Gain - LIN28A ENSG00000131914 CDS Human protein_coding chr1:26752813 chr1:26752814 nonsynonymous SNV 1.000 3 22 hm6Am_associated_SNPs_3838 0 0 1 2 26752814 26752835 mRNA hsa-miR-222 LIN28A miRanda miRanda
360 chr16 84497345 84497345 1 + G A rs184733492 84497347 + 84497327 84497367 41 GAAGATGTGTAGTGGACCGCACTCCGCGGCACCTTCCCTAA GAAGATGTGTAGTGGACCACACTCCGCGGCACCTTCCCTAA < 41bp 0.456749737734527 0.709165806421722 NA NA prediction 0.418331612843445 Functional Gain - ATP2C2-AS1 ENSG00000261286 ncRNA_intronic Human antisense chr16:84497347 chr16:84497345 . . 0 19 hm6Am_associated_SNPs_3848 0 0 0 2 84497339 84497362 mRNA hsa-miR-18a ATP2C2 miRanda miRanda
361 chr16 84497345 84497345 1 + G A rs184733492 84497347 + 84497327 84497367 41 GAAGATGTGTAGTGGACCGCACTCCGCGGCACCTTCCCTAA GAAGATGTGTAGTGGACCACACTCCGCGGCACCTTCCCTAA < 41bp 0.456749737734527 0.709165806421722 NA NA prediction 0.418331612843445 Functional Gain - ATP2C2-AS1 ENSG00000261286 ncRNA_intronic Human antisense chr16:84497347 chr16:84497345 . . 0 19 hm6Am_associated_SNPs_3848 0 0 0 2 84497339 84497362 mRNA hsa-miR-18b ATP2C2 miRanda miRanda
362 chr19 51832444 51832444 1 + G T rs182021883 51832442 + 51832422 51832462 41 CTCCCGCCCCCAAAACCCCCATGTCCACTGTCCCCAACCCT CTCCCGCCCCCAAAACCCCCATTTCCACTGTCCCCAACCCT < 41bp 0.513602066377498 0.722750257711759 NA NA prediction 0.418296382668521 Functional Gain - IGLON5 ENSG00000142549 UTR3 Human protein_coding chr19:51832442 chr19:51832444 . . 0 23 hm6Am_associated_SNPs_3850 0 0 0 1 51832442 51832463 mRNA hsa-miR-296-3p IGLON5 miRanda miRanda
363 chr1 247712411 247712411 1 + G C LUAD 247712413 + 247712393 247712433 41 TGCAACGTCCTGCCTCATGCATTTTCCTCTTGGTGCTTTGG TGCAACGTCCTGCCTCATCCATTTTCCTCTTGGTGCTTTGG < 41bp 0.356546061020816 0.709094726391862 NA NA prediction 0.418189452783724 Functional Gain - GCSAML ENSG00000169224 CDS Human protein_coding chr1:247712413 chr1:247712411 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_3851 0 0 0 3 247712409 247712430 mRNA hsa-miR-29a C1orf150 miRanda miRanda
364 chr1 247712411 247712411 1 + G C LUAD 247712413 + 247712393 247712433 41 TGCAACGTCCTGCCTCATGCATTTTCCTCTTGGTGCTTTGG TGCAACGTCCTGCCTCATCCATTTTCCTCTTGGTGCTTTGG < 41bp 0.356546061020816 0.709094726391862 NA NA prediction 0.418189452783724 Functional Gain - GCSAML ENSG00000169224 CDS Human protein_coding chr1:247712413 chr1:247712411 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_3851 0 0 0 3 247712406 247712430 mRNA hsa-miR-29b C1orf150 miRanda miRanda
365 chr1 247712411 247712411 1 + G C LUAD 247712413 + 247712393 247712433 41 TGCAACGTCCTGCCTCATGCATTTTCCTCTTGGTGCTTTGG TGCAACGTCCTGCCTCATCCATTTTCCTCTTGGTGCTTTGG < 41bp 0.356546061020816 0.709094726391862 NA NA prediction 0.418189452783724 Functional Gain - GCSAML ENSG00000169224 CDS Human protein_coding chr1:247712413 chr1:247712411 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_3851 0 0 0 3 247712409 247712430 mRNA hsa-miR-29c C1orf150 miRanda miRanda
366 chr14 90422918 90422918 1 + G A rs28365053 90422920 + 90422900 90422940 41 GTCTTCAACCCATTCTCCGCAGAGTTGGAGCACACAGCTGT GTCTTCAACCCATTCTCCACAGAGTTGGAGCACACAGCTGT < 41bp 0.613158925375028 0.821418334507635 NA NA prediction 0.416518818265213 Functional Gain - TDP1 ENSG00000042088 UTR5 Human protein_coding chr14:90422920 chr14:90422918 . . 0 19 hm6Am_associated_SNPs_3894 0 0 0 1 90422915 90422938 mRNA hsa-miR-138 TDP1 miRanda miRanda
367 chr9 127230827 127230827 1 + G A rs113085796 127230829 + 127230809 127230849 41 GGCTGTCACAGTCGCAATGCACTTCCTCTTTCTGGTGGCAT GGCTGTCACAGTCGCAATACACTTCCTCTTTCTGGTGGCAT < 41bp 0.442991675309882 0.707241220905396 NA NA prediction 0.414482441810791 Functional Gain - PSMB7;NR5A1 ENSG00000180264 CDS Human protein_coding chr9:127230829 chr9:127230827 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_3931 0 0 0 6 127230806 127230827 mRNA hsa-miR-25 GPR144 miRanda miRanda
368 chr9 127230827 127230827 1 + G A rs113085796 127230829 + 127230809 127230849 41 GGCTGTCACAGTCGCAATGCACTTCCTCTTTCTGGTGGCAT GGCTGTCACAGTCGCAATACACTTCCTCTTTCTGGTGGCAT < 41bp 0.442991675309882 0.707241220905396 NA NA prediction 0.414482441810791 Functional Gain - PSMB7;NR5A1 ENSG00000180264 CDS Human protein_coding chr9:127230829 chr9:127230827 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_3931 0 0 0 6 127230810 127230830 mRNA hsa-miR-33a GPR144 miRanda miRanda
369 chr9 127230827 127230827 1 + G A rs113085796 127230829 + 127230809 127230849 41 GGCTGTCACAGTCGCAATGCACTTCCTCTTTCTGGTGGCAT GGCTGTCACAGTCGCAATACACTTCCTCTTTCTGGTGGCAT < 41bp 0.442991675309882 0.707241220905396 NA NA prediction 0.414482441810791 Functional Gain - PSMB7;NR5A1 ENSG00000180264 CDS Human protein_coding chr9:127230829 chr9:127230827 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_3931 0 0 0 6 127230806 127230827 mRNA hsa-miR-92a GPR144 miRanda miRanda
370 chr9 127230827 127230827 1 + G A rs113085796 127230829 + 127230809 127230849 41 GGCTGTCACAGTCGCAATGCACTTCCTCTTTCTGGTGGCAT GGCTGTCACAGTCGCAATACACTTCCTCTTTCTGGTGGCAT < 41bp 0.442991675309882 0.707241220905396 NA NA prediction 0.414482441810791 Functional Gain - PSMB7;NR5A1 ENSG00000180264 CDS Human protein_coding chr9:127230829 chr9:127230827 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_3931 0 0 0 6 127230810 127230833 mRNA hsa-miR-520a-3p GPR144 miRanda miRanda
371 chr9 127230827 127230827 1 + G A rs113085796 127230829 + 127230809 127230849 41 GGCTGTCACAGTCGCAATGCACTTCCTCTTTCTGGTGGCAT GGCTGTCACAGTCGCAATACACTTCCTCTTTCTGGTGGCAT < 41bp 0.442991675309882 0.707241220905396 NA NA prediction 0.414482441810791 Functional Gain - PSMB7;NR5A1 ENSG00000180264 CDS Human protein_coding chr9:127230829 chr9:127230827 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_3931 0 0 0 6 127230806 127230827 mRNA hsa-miR-92b GPR144 miRanda miRanda
372 chr9 127230827 127230827 1 + G A rs113085796 127230829 + 127230809 127230849 41 GGCTGTCACAGTCGCAATGCACTTCCTCTTTCTGGTGGCAT GGCTGTCACAGTCGCAATACACTTCCTCTTTCTGGTGGCAT < 41bp 0.442991675309882 0.707241220905396 NA NA prediction 0.414482441810791 Functional Gain - PSMB7;NR5A1 ENSG00000180264 CDS Human protein_coding chr9:127230829 chr9:127230827 nonsynonymous SNV . 0 19 hm6Am_associated_SNPs_3931 0 0 0 6 127230811 127230830 mRNA hsa-miR-33b GPR144 miRanda miRanda
373 chr17 20885178 20885178 1 + G A rs144718407 20885180 + 20885160 20885200 41 GTTCCCGCTGCCTGGAATGCATGCTCTCTATCATCTTCCCT GTTCCCGCTGCCTGGAATACATGCTCTCTATCATCTTCCCT < 41bp 0.457629496268351 0.706401545298712 NA NA prediction 0.412803090597424 Functional Gain - LOC339260 ENSG00000264660 ncRNA_exonic Human antisense chr17:20885180 chr17:20885178 . . 0 19 hm6Am_associated_SNPs_3976 0 0 0 1 20885163 20885185 mRNA hsa-miR-424 LOC339260 miRanda miRanda
374 chr1 154235879 154235879 1 + G A rs543953280 154235881 + 154235861 154235901 41 CACCTTCGAAGCATCAATGCACACACCTGCTGTTGCTTTTG CACCTTCGAAGCATCAATACACACACCTGCTGTTGCTTTTG < 41bp 0.610993349002562 0.817252574903121 NA NA prediction 0.412518451801117 Functional Gain - UBAP2L ENSG00000143569 UTR3 Human protein_coding chr1:154235881 chr1:154235879 . . 0 19 hm6Am_associated_SNPs_3981 0 0 1 4 154235862 154235882 mRNA hsa-miR-33a UBAP2L miRanda miRanda
375 chr1 154235879 154235879 1 + G A rs543953280 154235881 + 154235861 154235901 41 CACCTTCGAAGCATCAATGCACACACCTGCTGTTGCTTTTG CACCTTCGAAGCATCAATACACACACCTGCTGTTGCTTTTG < 41bp 0.610993349002562 0.817252574903121 NA NA prediction 0.412518451801117 Functional Gain - UBAP2L ENSG00000143569 UTR3 Human protein_coding chr1:154235881 chr1:154235879 . . 0 19 hm6Am_associated_SNPs_3981 0 0 1 4 154235872 154235893 mRNA hsa-miR-214 UBAP2L miRanda miRanda
376 chr1 154235879 154235879 1 + G A rs543953280 154235881 + 154235861 154235901 41 CACCTTCGAAGCATCAATGCACACACCTGCTGTTGCTTTTG CACCTTCGAAGCATCAATACACACACCTGCTGTTGCTTTTG < 41bp 0.610993349002562 0.817252574903121 NA NA prediction 0.412518451801117 Functional Gain - UBAP2L ENSG00000143569 UTR3 Human protein_coding chr1:154235881 chr1:154235879 . . 0 19 hm6Am_associated_SNPs_3981 0 0 1 4 154235862 154235884 mRNA hsa-miR-218 UBAP2L miRanda miRanda
377 chr1 154235879 154235879 1 + G A rs543953280 154235881 + 154235861 154235901 41 CACCTTCGAAGCATCAATGCACACACCTGCTGTTGCTTTTG CACCTTCGAAGCATCAATACACACACCTGCTGTTGCTTTTG < 41bp 0.610993349002562 0.817252574903121 NA NA prediction 0.412518451801117 Functional Gain - UBAP2L ENSG00000143569 UTR3 Human protein_coding chr1:154235881 chr1:154235879 . . 0 19 hm6Am_associated_SNPs_3981 0 0 1 4 154235863 154235882 mRNA hsa-miR-33b UBAP2L miRanda miRanda
378 chr3 129035550 129035550 1 + G T rs62266915 129035548 + 129035528 129035568 41 GGGGCTCCAGGCCTGCCCGCAAGAGGAGCTTTAATTTGTCC GGGGCTCCAGGCCTGCCCGCAATAGGAGCTTTAATTTGTCC < 41bp 0.503132936307074 0.708719373372916 NA NA prediction 0.411172874131684 Functional Gain - H1FX-AS1 ENSG00000206417 ncRNA_intronic Human antisense chr3:129035548 chr3:129035550 . . 0 23 hm6Am_associated_SNPs_4022 0 0 1 1 129035548 129035571 mRNA hsa-miR-182 C3orf47 miRanda miRanda
379 chr12 123270314 123270314 1 + G A UCEC 123270312 + 123270292 123270332 41 GTTAGTGGAACTTTCTGCCCAGGTAGGACAGCTACAAGCTC GTTAGTGGAACTTTCTGCCCAGATAGGACAGCTACAAGCTC < 41bp 0.501724154466441 0.70547496898984 NA NA prediction 0.407501629046798 Functional Gain - CCDC62 ENSG00000130783 CDS Human protein_coding chr12:123270312 chr12:123270314 nonsynonymous SNV 1.000 0 23 hm6Am_associated_SNPs_4122 0 0 1 1 123270306 123270327 mRNA hsa-miR-142-3p CCDC62 miRanda miRanda
380 chr1 849528 849528 1 + G T rs537480600 849526 + 849506 849546 41 GTCCTGGAGAAGGAAGAACCAGGTGGCCCACCTTCGGTGCA GTCCTGGAGAAGGAAGAACCAGTTGGCCCACCTTCGGTGCA < 41bp 0.510432996236655 0.714025750414385 NA NA prediction 0.407185508355459 Functional Gain - FAM41C;LOC100130417 ENSG00000230699 ncRNA_exonic Human lincRNA chr1:849526 chr1:849528 . . 0 23 hm6Am_associated_SNPs_4134 0 0 0 2 849521 849538 lncRNA hsa-miR-541-3p AL645608.3 miRanda starBase2
381 chr1 849528 849528 1 + G T rs537480600 849526 + 849506 849546 41 GTCCTGGAGAAGGAAGAACCAGGTGGCCCACCTTCGGTGCA GTCCTGGAGAAGGAAGAACCAGTTGGCCCACCTTCGGTGCA < 41bp 0.510432996236655 0.714025750414385 NA NA prediction 0.407185508355459 Functional Gain - FAM41C;LOC100130417 ENSG00000230699 ncRNA_exonic Human lincRNA chr1:849526 chr1:849528 . . 0 23 hm6Am_associated_SNPs_4134 0 0 0 2 849517 849538 lncRNA hsa-miR-654-5p AL645608.3 miRanda starBase2
382 chr17 26369927 26369927 1 + G A UCEC 26369929 + 26369909 26369949 41 TGTGGCGCAAGAGCCAACGCAAAAATGATGGCGGCTTACAA TGTGGCGCAAGAGCCAACACAAAAATGATGGCGGCTTACAA < 41bp 0.636439206918298 0.839988782414862 NA NA prediction 0.407099150993128 Functional Gain - NLK ENSG00000087095 CDS Human protein_coding chr17:26369929 chr17:26369927 nonsynonymous SNV 0.997 1 19 hm6Am_associated_SNPs_4137 0 0 1 1 26369917 26369934 mRNA hsa-miR-129-5p NLK miRanda miRanda
383 chr19 41455272 41455272 1 + G T UCEC 41455270 + 41455250 41455290 41 AGCCAGCTTCCTTCCCTTCCATGGCACCAGTTGTCTGAGGT AGCCAGCTTCCTTCCCTTCCATTGCACCAGTTGTCTGAGGT < 41bp 0.506402247081609 0.709255863434517 NA NA prediction 0.405707232705818 Functional Gain - CYP2B7P ENSG00000256612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:41455270 chr19:41455272 . . 0 23 hm6Am_associated_SNPs_4188 0 0 0 1 41455270 41455293 mRNA hsa-miR-551b CYP2B7P1 miRanda miRanda
384 chr6 3129333 3129333 1 + G A rs74772741 3129335 + 3129315 3129355 41 AGTGATGGGGGCATAACCGCACTCATTGCTGCTGCAAAATA AGTGATGGGGGCATAACCACACTCATTGCTGCTGCAAAATA < 41bp 0.439772026483873 0.702478729139053 NA NA prediction 0.404957458278106 Functional Gain - BPHL ENSG00000137274 CDS Human protein_coding chr6:3129335 chr6:3129333 nonsynonymous SNV 0.060 4 19 hm6Am_associated_SNPs_4219 0 0 1 6 3129326 3129348 mRNA hsa-miR-15a BPHL miRanda miRanda
385 chr6 3129333 3129333 1 + G A rs74772741 3129335 + 3129315 3129355 41 AGTGATGGGGGCATAACCGCACTCATTGCTGCTGCAAAATA AGTGATGGGGGCATAACCACACTCATTGCTGCTGCAAAATA < 41bp 0.439772026483873 0.702478729139053 NA NA prediction 0.404957458278106 Functional Gain - BPHL ENSG00000137274 CDS Human protein_coding chr6:3129335 chr6:3129333 nonsynonymous SNV 0.060 4 19 hm6Am_associated_SNPs_4219 0 0 1 6 3129328 3129348 mRNA hsa-miR-16 BPHL miRanda miRanda
386 chr6 3129333 3129333 1 + G A rs74772741 3129335 + 3129315 3129355 41 AGTGATGGGGGCATAACCGCACTCATTGCTGCTGCAAAATA AGTGATGGGGGCATAACCACACTCATTGCTGCTGCAAAATA < 41bp 0.439772026483873 0.702478729139053 NA NA prediction 0.404957458278106 Functional Gain - BPHL ENSG00000137274 CDS Human protein_coding chr6:3129335 chr6:3129333 nonsynonymous SNV 0.060 4 19 hm6Am_associated_SNPs_4219 0 0 1 6 3129326 3129348 mRNA hsa-miR-15b BPHL miRanda miRanda
387 chr6 3129333 3129333 1 + G A rs74772741 3129335 + 3129315 3129355 41 AGTGATGGGGGCATAACCGCACTCATTGCTGCTGCAAAATA AGTGATGGGGGCATAACCACACTCATTGCTGCTGCAAAATA < 41bp 0.439772026483873 0.702478729139053 NA NA prediction 0.404957458278106 Functional Gain - BPHL ENSG00000137274 CDS Human protein_coding chr6:3129335 chr6:3129333 nonsynonymous SNV 0.060 4 19 hm6Am_associated_SNPs_4219 0 0 1 6 3129328 3129348 mRNA hsa-miR-195 BPHL miRanda miRanda
388 chr6 3129333 3129333 1 + G A rs74772741 3129335 + 3129315 3129355 41 AGTGATGGGGGCATAACCGCACTCATTGCTGCTGCAAAATA AGTGATGGGGGCATAACCACACTCATTGCTGCTGCAAAATA < 41bp 0.439772026483873 0.702478729139053 NA NA prediction 0.404957458278106 Functional Gain - BPHL ENSG00000137274 CDS Human protein_coding chr6:3129335 chr6:3129333 nonsynonymous SNV 0.060 4 19 hm6Am_associated_SNPs_4219 0 0 1 6 3129327 3129348 mRNA hsa-miR-424 BPHL miRanda miRanda
389 chr6 3129333 3129333 1 + G A rs74772741 3129335 + 3129315 3129355 41 AGTGATGGGGGCATAACCGCACTCATTGCTGCTGCAAAATA AGTGATGGGGGCATAACCACACTCATTGCTGCTGCAAAATA < 41bp 0.439772026483873 0.702478729139053 NA NA prediction 0.404957458278106 Functional Gain - BPHL ENSG00000137274 CDS Human protein_coding chr6:3129335 chr6:3129333 nonsynonymous SNV 0.060 4 19 hm6Am_associated_SNPs_4219 0 0 1 6 3129326 3129348 mRNA hsa-miR-497 BPHL miRanda miRanda
390 chr19 18277041 18277041 1 + G C LUSC 18277040 + 18277020 18277060 41 GATCTTTGAAGAGCAGGGCCAGACTCAAGAGAAATGCAGCA GATCTTTGAAGAGCAGGGCCACACTCAAGAGAAATGCAGCA < 41bp 0.431900371157826 0.702442776386894 NA NA prediction 0.404885552773789 Functional Gain - PIK3R2 ENSG00000105647;ENSG00000268173 CDS Human other chr19:18277040 chr19:18277041 nonsynonymous SNV 0.997 2 22 hm6Am_associated_SNPs_4221 0 0 1 1 18277019 18277041 mRNA hsa-miR-328 PIK3R2 miRanda miRanda
391 chr1 16357081 16357081 1 + G T HNSC 16357083 + 16357063 16357103 41 CTGGCAGCCAACGCCATTGCACAGAGCTGCCAGCCCTCCTT CTGGCAGCCAACGCCATTTCACAGAGCTGCCAGCCCTCCTT < 41bp 0.278091250746125 0.702363254217984 NA NA prediction 0.404726508435968 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16357083 chr1:16357081 nonsynonymous SNV 0.515 1 19 hm6Am_associated_SNPs_4228 0 0 0 1 16357079 16357101 mRNA hsa-miR-485-5p CLCNKA miRanda miRanda
392 chr11 46745004 46745004 1 + G T COAD 46745002 + 46744982 46745022 41 GCAACCCCGACAGCAGCACCACGGGACCCTGGTGCTACACT GCAACCCCGACAGCAGCACCACTGGACCCTGGTGCTACACT < 41bp 0.551904675918865 0.753948912628266 NA NA prediction 0.404088473418801 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46745002 chr11:46745004 synonymous SNV . 0 23 hm6Am_associated_SNPs_4246 0 0 1 4 46744997 46745018 mRNA hsa-miR-29a F2 miRanda miRanda
393 chr11 46745004 46745004 1 + G T COAD 46745002 + 46744982 46745022 41 GCAACCCCGACAGCAGCACCACGGGACCCTGGTGCTACACT GCAACCCCGACAGCAGCACCACTGGACCCTGGTGCTACACT < 41bp 0.551904675918865 0.753948912628266 NA NA prediction 0.404088473418801 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46745002 chr11:46745004 synonymous SNV . 0 23 hm6Am_associated_SNPs_4246 0 0 1 4 46744996 46745018 mRNA hsa-miR-29b F2 miRanda miRanda
394 chr11 46745004 46745004 1 + G T COAD 46745002 + 46744982 46745022 41 GCAACCCCGACAGCAGCACCACGGGACCCTGGTGCTACACT GCAACCCCGACAGCAGCACCACTGGACCCTGGTGCTACACT < 41bp 0.551904675918865 0.753948912628266 NA NA prediction 0.404088473418801 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46745002 chr11:46745004 synonymous SNV . 0 23 hm6Am_associated_SNPs_4246 0 0 1 4 46745002 46745025 mRNA hsa-miR-142-3p F2 miRanda miRanda
395 chr11 46745004 46745004 1 + G T COAD 46745002 + 46744982 46745022 41 GCAACCCCGACAGCAGCACCACGGGACCCTGGTGCTACACT GCAACCCCGACAGCAGCACCACTGGACCCTGGTGCTACACT < 41bp 0.551904675918865 0.753948912628266 NA NA prediction 0.404088473418801 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46745002 chr11:46745004 synonymous SNV . 0 23 hm6Am_associated_SNPs_4246 0 0 1 4 46744997 46745018 mRNA hsa-miR-29c F2 miRanda miRanda
396 chr11 36614667 36614667 1 + G A GBM 36614669 + 36614649 36614689 41 TCATTAGTATCATCTTCAGCACATTTCAACATATAGAAATA TCATTAGTATCATCTTCAACACATTTCAACATATAGAAATA < 41bp 0.446714287704268 0.700985549029077 NA NA prediction 0.401971098058154 Functional Gain - RAG2 ENSG00000175097 CDS Human protein_coding chr11:36614669 chr11:36614667 nonsynonymous SNV 0.569 2 19 hm6Am_associated_SNPs_4334 0 0 0 2 36614656 36614677 mRNA hsa-miR-203 RAG1 miRanda miRanda
397 chr11 36614667 36614667 1 + G A GBM 36614669 + 36614649 36614689 41 TCATTAGTATCATCTTCAGCACATTTCAACATATAGAAATA TCATTAGTATCATCTTCAACACATTTCAACATATAGAAATA < 41bp 0.446714287704268 0.700985549029077 NA NA prediction 0.401971098058154 Functional Gain - RAG2 ENSG00000175097 CDS Human protein_coding chr11:36614669 chr11:36614667 nonsynonymous SNV 0.569 2 19 hm6Am_associated_SNPs_4334 0 0 0 2 36614660 36614680 mRNA hsa-miR-653 RAG1 miRanda miRanda
398 chr21 45710823 45710823 1 + G C GBM 45710822 + 45710802 45710842 41 GGGGAACAGGTGGTCAGGGCAGAATTTCAGGCCCTGGCAGC GGGGAACAGGTGGTCAGGGCACAATTTCAGGCCCTGGCAGC < 41bp 0.560322279396607 0.761061015888753 NA NA prediction 0.401477472984292 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45710822 chr21:45710823 nonsynonymous SNV . 0 22 hm6Am_associated_SNPs_4364 0 0 0 1 45710802 45710823 mRNA hsa-miR-874 AIRE miRanda miRanda
399 chr15 25467386 25467386 1 + G A UCEC 25467388 + 25467368 25467408 41 AGGTGCTCAGCTCCCAGTGCACTGAAGCTCAGACCCTTCCT AGGTGCTCAGCTCCCAGTACACTGAAGCTCAGACCCTTCCT < 41bp 0.622444971778268 0.822981002527367 NA NA prediction 0.401072061498198 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25467388 chr15:25467386 . . 0 19 hm6Am_associated_SNPs_4381 0 0 0 3 25467372 25467392 mRNA hsa-miR-148a SNRPN miRanda miRanda
400 chr15 25467386 25467386 1 + G A UCEC 25467388 + 25467368 25467408 41 AGGTGCTCAGCTCCCAGTGCACTGAAGCTCAGACCCTTCCT AGGTGCTCAGCTCCCAGTACACTGAAGCTCAGACCCTTCCT < 41bp 0.622444971778268 0.822981002527367 NA NA prediction 0.401072061498198 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25467388 chr15:25467386 . . 0 19 hm6Am_associated_SNPs_4381 0 0 0 3 25467371 25467392 mRNA hsa-miR-152 SNRPN miRanda miRanda
401 chr15 25467386 25467386 1 + G A UCEC 25467388 + 25467368 25467408 41 AGGTGCTCAGCTCCCAGTGCACTGAAGCTCAGACCCTTCCT AGGTGCTCAGCTCCCAGTACACTGAAGCTCAGACCCTTCCT < 41bp 0.622444971778268 0.822981002527367 NA NA prediction 0.401072061498198 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25467388 chr15:25467386 . . 0 19 hm6Am_associated_SNPs_4381 0 0 0 3 25467372 25467392 mRNA hsa-miR-148b SNRPN miRanda miRanda
402 chr19 41627401 41627401 1 + G C rs2287941 41627400 + 41627380 41627420 41 ACGTTTGTGCTGAGTCGCTCAGTGTCCAACATTATCTGTTC ACGTTTGTGCTGAGTCGCTCACTGTCCAACATTATCTGTTC < 41bp 0.449978312218647 0.700418504631842 NA NA prediction 0.400837009263683 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41627400 chr19:41627401 nonsynonymous SNV 0.798 1 22 hm6Am_associated_SNPs_4390 0 0 0 2 41627395 41627416 mRNA hsa-miR-190 CYP2F1 miRanda miRanda
403 chr19 41627401 41627401 1 + G C rs2287941 41627400 + 41627380 41627420 41 ACGTTTGTGCTGAGTCGCTCAGTGTCCAACATTATCTGTTC ACGTTTGTGCTGAGTCGCTCACTGTCCAACATTATCTGTTC < 41bp 0.449978312218647 0.700418504631842 NA NA prediction 0.400837009263683 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41627400 chr19:41627401 nonsynonymous SNV 0.798 1 22 hm6Am_associated_SNPs_4390 0 0 0 2 41627395 41627416 mRNA hsa-miR-190b CYP2F1 miRanda miRanda
404 chr10 29698528 29698528 1 + G A rs144962105 29698528 + 29698508 29698548 41 CCGGGCGGCCAGCTGGGCTCGGAGTGCAGCGGGGTTAGGAT CCGGGCGGCCAGCTGGGCTCAGAGTGCAGCGGGGTTAGGAT Direct Gain 0 0.993689002414044 NA NA prediction 0.987378004828088 Functional Gain - SVIL-AS1 ENSG00000224597 ncRNA_exonic Human antisense chr10:29698528 chr10:29698528 . . 0 21 hm6Am_associated_SNPs_4623 0 0 1 1 29698509 29698530 mRNA hsa-miR-615-3p LOC387647 miRanda miRanda
405 chr5 60241050 60241050 1 + G A BLCA 60241050 + 60241030 60241070 41 TTACCCCTACTGCGGGTCCCGCTGCTGGCAGCGCTGGAAAC TTACCCCTACTGCGGGTCCCACTGCTGGCAGCGCTGGAAAC Direct Gain 0 0.988903061227374 NA NA prediction 0.977806122454749 Functional Gain - NDUFAF2 ENSG00000164182 UTR5 Human protein_coding chr5:60241050 chr5:60241050 . . 0 21 hm6Am_associated_SNPs_5111 1 0 1 1 60241034 60241056 mRNA hsa-miR-503 NDUFAF2 miRanda miRanda
406 chr1 120906064 120906064 1 + G A STAD 120906064 + 120906044 120906084 41 TGCCGGATCCAGCGAAATCCGCTCCTGCTCCCAAGAAGGGC TGCCGGATCCAGCGAAATCCACTCCTGCTCCCAAGAAGGGC Direct Gain 0 0.988478140597997 NA NA prediction 0.976956281195994 Functional Gain - HIST2H2BA ENSG00000223345 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:120906064 chr1:120906064 . . 0 21 hm6Am_associated_SNPs_5169 0 0 0 1 120906044 120906064 mRNA hsa-miR-876-5p HIST2H2BA miRanda miRanda
407 chr5 72112421 72112421 1 + T A rs34648 72112421 + 72112401 72112441 41 CCAAGGCGACCGCCGCCGAATGTTCCCGCCGCGGGCTCCGC CCAAGGCGACCGCCGCCGAAAGTTCCCGCCGCGGGCTCCGC Direct Gain 0 0.987096572674525 NA NA prediction 0.97419314534905 Functional Gain - TNPO1 ENSG00000083312 UTR5 Human protein_coding chr5:72112421 chr5:72112421 . . 0 21 hm6Am_associated_SNPs_5332 0 1 0 1 72112418 72112425 mRNA hsa-miR-543 TNPO1 miRanda miRanda
408 chr16 29690494 29690494 1 + C A LUAD 29690494 + 29690474 29690514 41 GGTCCTGAGCAGCCAACACACCAGCCCAGACAGCTGCAAGT GGTCCTGAGCAGCCAACACAACAGCCCAGACAGCTGCAAGT Direct Gain 0 0.983499154455643 NA NA prediction 0.966998308911285 Functional Gain - QPRT ENSG00000103485 UTR5 Human protein_coding chr16:29690494 chr16:29690494 . . 0 21 hm6Am_associated_SNPs_5916 0 0 1 1 29690474 29690499 mRNA hsa-miR-138 QPRT miRanda miRanda
409 chrX 48432879 48432879 1 + G A UCEC 48432879 + 48432859 48432899 41 CTACGTACTCTTTATCAATCGTCTTCCGGCGCAGCCCCGTC CTACGTACTCTTTATCAATCATCTTCCGGCGCAGCCCCGTC Direct Gain 0 0.982181545005636 NA NA prediction 0.964363090011273 Functional Gain - RBM3 ENSG00000204620 CDS Human antisense chrX:48432879 chrX:48432879 stopgain . 0 21 hm6Am_associated_SNPs_6180 0 0 1 1 48432864 48432886 mRNA hsa-miR-7 RBM3 miRanda miRanda
410 chr3 44666512 44666512 1 + G A rs148619755 44666512 + 44666492 44666532 41 GGGTGCAACCGGAAGTCGCAGTATTCTCGGCTCGGCCATTA GGGTGCAACCGGAAGTCGCAATATTCTCGGCTCGGCCATTA Direct Gain 0 0.981958752850433 NA NA prediction 0.963917505700866 Functional Gain - ZNF197 ENSG00000236869 ncRNA_intronic Human antisense chr3:44666512 chr3:44666512 . . 0 21 hm6Am_associated_SNPs_6232 0 0 0 1 44666511 44666527 mRNA hsa-miR-615-3p ZNF197 miRanda miRanda
411 chr19 54705036 54705036 1 + G A rs16985472 54705036 + 54705016 54705056 41 TCTCCCGCGCAGGCGCAGACGGGGAAGCGGAGCCAACATGC TCTCCCGCGCAGGCGCAGACAGGGAAGCGGAGCCAACATGC Direct Gain 0 0.980784420245471 NA NA prediction 0.961568840490941 Functional Gain - RPS9 ENSG00000170889 UTR5 Human protein_coding chr19:54705036 chr19:54705036 . . 0 21 hm6Am_associated_SNPs_6492 0 0 1 2 54705030 54705052 mRNA hsa-miR-133a RPS9 miRanda miRanda
412 chr19 54705036 54705036 1 + G A rs16985472 54705036 + 54705016 54705056 41 TCTCCCGCGCAGGCGCAGACGGGGAAGCGGAGCCAACATGC TCTCCCGCGCAGGCGCAGACAGGGAAGCGGAGCCAACATGC Direct Gain 0 0.980784420245471 NA NA prediction 0.961568840490941 Functional Gain - RPS9 ENSG00000170889 UTR5 Human protein_coding chr19:54705036 chr19:54705036 . . 0 21 hm6Am_associated_SNPs_6492 0 0 1 2 54705030 54705052 mRNA hsa-miR-133b RPS9 miRanda miRanda
413 chrX 48432868 48432868 1 + C A UCEC 48432868 + 48432848 48432888 41 GGACGTTCTCGCTACGTACTCTTTATCAATCGTCTTCCGGC GGACGTTCTCGCTACGTACTATTTATCAATCGTCTTCCGGC Direct Gain 0 0.980724386398326 NA NA prediction 0.961448772796651 Functional Gain - RBM3 ENSG00000204620 CDS Human antisense chrX:48432868 chrX:48432868 nonsynonymous SNV . 0 21 hm6Am_associated_SNPs_6506 0 0 1 1 48432864 48432886 mRNA hsa-miR-7 RBM3 miRanda miRanda
414 chr3 179322636 179322636 1 + G A KIRP 179322636 + 179322616 179322656 41 AGTTTGTTGCGGCGGGTTTCGGTTACTGCGGTGGCAGCTCT AGTTTGTTGCGGCGGGTTTCAGTTACTGCGGTGGCAGCTCT Direct Gain 0 0.979705362167503 NA NA prediction 0.959410724335006 Functional Gain - NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179322636 chr3:179322636 nonsynonymous SNV . 0 21 hm6Am_associated_SNPs_6768 0 0 1 1 179322634 179322655 mRNA hsa-miR-22 NDUFB5 miRanda miRanda
415 chr13 70681381 70681381 1 + C A LUAD 70681381 + 70681361 70681401 41 CTGGCTAGAGTTGTCTGGCTCCACTTTGAGCTCTTGCAGAA CTGGCTAGAGTTGTCTGGCTACACTTTGAGCTCTTGCAGAA Direct Gain 0 0.978884554810769 NA NA prediction 0.957769109621538 Functional Gain - KLHL1 ENSG00000150361 CDS Human protein_coding chr13:70681381 chr13:70681381 stopgain 0.981 0 21 hm6Am_associated_SNPs_6990 0 0 0 2 70681375 70681397 mRNA hsa-miR-335 ATXN8OS miRanda miRanda
416 chr13 70681381 70681381 1 + C A LUAD 70681381 + 70681361 70681401 41 CTGGCTAGAGTTGTCTGGCTCCACTTTGAGCTCTTGCAGAA CTGGCTAGAGTTGTCTGGCTACACTTTGAGCTCTTGCAGAA Direct Gain 0 0.978884554810769 NA NA prediction 0.957769109621538 Functional Gain - KLHL1 ENSG00000150361 CDS Human protein_coding chr13:70681381 chr13:70681381 stopgain 0.981 0 21 hm6Am_associated_SNPs_6990 0 0 0 2 70681381 70681402 mRNA hsa-miR-544 ATXN8OS miRanda miRanda
417 chr20 44519601 44519601 1 + C A rs571518624 44519601 + 44519581 44519621 41 TCGAGTCCCCAGAGTGCACCCGAATCCACGGGCTCGGAGGC TCGAGTCCCCAGAGTGCACCAGAATCCACGGGCTCGGAGGC Direct Gain 0 0.975869518337339 NA NA prediction 0.951739036674678 Functional Gain - NEURL2 ENSG00000124257 CDS Human protein_coding chr20:44519601 chr20:44519601 synonymous SNV . 0 21 hm6Am_associated_SNPs_7927 0 0 0 1 44519596 44519618 mRNA hsa-miR-615-3p CTSA miRanda miRanda
418 chr17 16342347 16342347 1 + T A UCEC 16342347 + 16342327 16342367 41 GGCCTGGCGCACATAAGGTGTGACCTTTTCATTCCCGTTGT GGCCTGGCGCACATAAGGTGAGACCTTTTCATTCCCGTTGT Direct Gain 0 0.975136941993757 NA NA prediction 0.950273883987514 Functional Gain - LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342347 chr17:16342347 . . 0 21 hm6Am_associated_SNPs_8169 0 0 1 1 16342332 16342354 mRNA hsa-miR-506 NCRNA00188 miRanda miRanda
419 chr11 43702271 43702271 1 + G A rs185350380 43702271 + 43702251 43702291 41 TTAGGCCCAAAGTGGTGTCGGAGCAGCGCCTATTAGTGTCA TTAGGCCCAAAGTGGTGTCGAAGCAGCGCCTATTAGTGTCA Direct Gain 0 0.974528900218918 NA NA prediction 0.949057800437835 Functional Gain - HSD17B12 ENSG00000149084 UTR5 Human protein_coding chr11:43702271 chr11:43702271 . . 0 21 hm6Am_associated_SNPs_8357 0 0 1 1 43702270 43702293 mRNA hsa-miR-425 HSD17B12 miRanda miRanda
420 chr11 13299470 13299470 1 + G A rs557642365 13299470 + 13299450 13299490 41 GGGCGCTCCCGGCGAGCCACGGTGAGTGTCAGGCCGGCGGC GGGCGCTCCCGGCGAGCCACAGTGAGTGTCAGGCCGGCGGC Direct Gain 0 0.972616143723271 NA NA prediction 0.945232287446542 Functional Gain - ARNTL ENSG00000133794 UTR5 Human protein_coding chr11:13299470 chr11:13299470 . . 0 21 hm6Am_associated_SNPs_9044 0 0 0 3 13299460 13299470 mRNA hsa-miR-15a ARNTL miRanda miRanda
421 chr11 13299470 13299470 1 + G A rs557642365 13299470 + 13299450 13299490 41 GGGCGCTCCCGGCGAGCCACGGTGAGTGTCAGGCCGGCGGC GGGCGCTCCCGGCGAGCCACAGTGAGTGTCAGGCCGGCGGC Direct Gain 0 0.972616143723271 NA NA prediction 0.945232287446542 Functional Gain - ARNTL ENSG00000133794 UTR5 Human protein_coding chr11:13299470 chr11:13299470 . . 0 21 hm6Am_associated_SNPs_9044 0 0 0 3 13299460 13299470 mRNA hsa-miR-15b ARNTL miRanda miRanda
422 chr11 13299470 13299470 1 + G A rs557642365 13299470 + 13299450 13299490 41 GGGCGCTCCCGGCGAGCCACGGTGAGTGTCAGGCCGGCGGC GGGCGCTCCCGGCGAGCCACAGTGAGTGTCAGGCCGGCGGC Direct Gain 0 0.972616143723271 NA NA prediction 0.945232287446542 Functional Gain - ARNTL ENSG00000133794 UTR5 Human protein_coding chr11:13299470 chr11:13299470 . . 0 21 hm6Am_associated_SNPs_9044 0 0 0 3 13299461 13299470 mRNA hsa-miR-497 ARNTL miRanda miRanda
423 chr5 7869328 7869328 1 + G A rs148267849 7869328 + 7869308 7869348 41 TGCCCGGCTGGCGCGGCGTGGGTAAGCTGCCTGTCGGCTAC TGCCCGGCTGGCGCGGCGTGAGTAAGCTGCCTGTCGGCTAC Direct Gain 0 0.972090184057927 NA NA prediction 0.944180368115854 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7869328 chr5:7869328 unknown . 0 21 hm6Am_associated_SNPs_9237 0 0 1 1 7869320 7869328 mRNA hsa-miR-194 MTRR miRanda miRanda
424 chr1 48688388 48688388 1 + G A COAD 48688388 + 48688368 48688408 41 AGCGCCTCAAAGTCCAGCCTGCTGTTGACCAACACTAACAG AGCGCCTCAAAGTCCAGCCTACTGTTGACCAACACTAACAG Direct Gain 0 0.970064284766773 NA NA prediction 0.940128569533547 Functional Gain - SLC5A9 ENSG00000117834 UTR5 Human protein_coding chr1:48688388 chr1:48688388 . . 0 21 hm6Am_associated_SNPs_10039 0 0 0 4 48688376 48688400 mRNA hsa-miR-182 SLC5A9 miRanda miRanda
425 chr1 48688388 48688388 1 + G A COAD 48688388 + 48688368 48688408 41 AGCGCCTCAAAGTCCAGCCTGCTGTTGACCAACACTAACAG AGCGCCTCAAAGTCCAGCCTACTGTTGACCAACACTAACAG Direct Gain 0 0.970064284766773 NA NA prediction 0.940128569533547 Functional Gain - SLC5A9 ENSG00000117834 UTR5 Human protein_coding chr1:48688388 chr1:48688388 . . 0 21 hm6Am_associated_SNPs_10039 0 0 0 4 48688368 48688392 mRNA hsa-miR-214 SLC5A9 miRanda miRanda
426 chr1 48688388 48688388 1 + G A COAD 48688388 + 48688368 48688408 41 AGCGCCTCAAAGTCCAGCCTGCTGTTGACCAACACTAACAG AGCGCCTCAAAGTCCAGCCTACTGTTGACCAACACTAACAG Direct Gain 0 0.970064284766773 NA NA prediction 0.940128569533547 Functional Gain - SLC5A9 ENSG00000117834 UTR5 Human protein_coding chr1:48688388 chr1:48688388 . . 0 21 hm6Am_associated_SNPs_10039 0 0 0 4 48688375 48688397 mRNA hsa-miR-505 SLC5A9 miRanda miRanda
427 chr1 48688388 48688388 1 + G A COAD 48688388 + 48688368 48688408 41 AGCGCCTCAAAGTCCAGCCTGCTGTTGACCAACACTAACAG AGCGCCTCAAAGTCCAGCCTACTGTTGACCAACACTAACAG Direct Gain 0 0.970064284766773 NA NA prediction 0.940128569533547 Functional Gain - SLC5A9 ENSG00000117834 UTR5 Human protein_coding chr1:48688388 chr1:48688388 . . 0 21 hm6Am_associated_SNPs_10039 0 0 0 4 48688377 48688396 mRNA hsa-miR-421 SLC5A9 miRanda miRanda
428 chr11 73588106 73588106 1 + G A UCEC 73588106 + 73588086 73588126 41 TTCAGAGCGACTGGGCGCAAGCCCTCAGGTGAATCCAGGCC TTCAGAGCGACTGGGCGCAAACCCTCAGGTGAATCCAGGCC Direct Gain 0 0.969684721450538 NA NA prediction 0.939369442901077 Functional Gain - PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73588106 chr11:73588106 nonsynonymous SNV 0.440 1 21 hm6Am_associated_SNPs_10196 0 0 1 1 73588087 73588111 mRNA hsa-miR-296-3p PAAF1 miRanda miRanda
429 chr15 51201024 51201024 1 + C A UCS 51201024 + 51201004 51201044 41 CGGCGCTGCCGGGACTCTTTCTGCAGAACCAGCCCGGTGGT CGGCGCTGCCGGGACTCTTTATGCAGAACCAGCCCGGTGGT Direct Gain 0 0.967909957933997 NA NA prediction 0.935819915867995 Functional Gain - AP4E1 ENSG00000081014 CDS Human protein_coding chr15:51201024 chr15:51201024 nonsynonymous SNV 0.982 1 21 hm6Am_associated_SNPs_10964 0 0 1 1 51201011 51201032 mRNA hsa-miR-544 AP4E1 miRanda miRanda
430 chr1 25664944 25664944 1 + G A rs187950680 25664944 + 25664924 25664964 41 AACCACTGCACGACGGGGCTGGACGTAAGTGTCGGGCGGGG AACCACTGCACGACGGGGCTAGACGTAAGTGTCGGGCGGGG Direct Gain 0 0.96779036692261 NA NA prediction 0.935580733845221 Functional Gain - TMEM50A ENSG00000183726 UTR5 Human protein_coding chr1:25664944 chr1:25664944 . . 0 21 hm6Am_associated_SNPs_11015 0 0 1 1 25664938 25664947 mRNA hsa-miR-217 TMEM50A miRanda miRanda
431 chr6 41021062 41021062 1 + G A rs370038303 41021062 + 41021042 41021082 41 TGCCTCTCTCCTCTCCCTCAGTGACTCCTGAGCCACAGCCC TGCCTCTCTCCTCTCCCTCAATGACTCCTGAGCCACAGCCC Direct Gain 0 0.967585929367685 NA NA prediction 0.935171858735369 Functional Gain - APOBEC2 ENSG00000124701 UTR5 Human protein_coding chr6:41021062 chr6:41021062 . . 0 21 hm6Am_associated_SNPs_11103 0 0 0 1 41021052 41021076 mRNA hsa-miR-24 APOBEC2 miRanda miRanda
432 chr4 144480792 144480792 1 + C A UCEC 144480792 + 144480772 144480812 41 TGGAGCTTCCGCGCCGACTTCTTCGACAAACTGTGCCTTGG TGGAGCTTCCGCGCCGACTTATTCGACAAACTGTGCCTTGG Direct Gain 0 0.967454711444945 NA NA prediction 0.93490942288989 Functional Gain - GUSBP5 ENSG00000236296 ncRNA_exonic Human transcribed_processed_pseudogene chr4:144480792 chr4:144480792 . . 0 21 hm6Am_associated_SNPs_11165 0 0 0 2 144480792 144480811 mRNA hsa-miR-124 LOC441046 miRanda miRanda
433 chr4 144480792 144480792 1 + C A UCEC 144480792 + 144480772 144480812 41 TGGAGCTTCCGCGCCGACTTCTTCGACAAACTGTGCCTTGG TGGAGCTTCCGCGCCGACTTATTCGACAAACTGTGCCTTGG Direct Gain 0 0.967454711444945 NA NA prediction 0.93490942288989 Functional Gain - GUSBP5 ENSG00000236296 ncRNA_exonic Human transcribed_processed_pseudogene chr4:144480792 chr4:144480792 . . 0 21 hm6Am_associated_SNPs_11165 0 0 0 2 144480792 144480811 mRNA hsa-miR-506 LOC441046 miRanda miRanda
434 chr14 35409222 35409222 1 + G A rs567042879 35409222 + 35409202 35409242 41 ATCAACTTCTAATTCATCTCGCCAGGAGAGGCCTCCAGTGA ATCAACTTCTAATTCATCTCACCAGGAGAGGCCTCCAGTGA Direct Gain 0 0.967402472760833 NA NA prediction 0.934804945521665 Functional Gain - IGBP1P1 ENSG00000226677 ncRNA_exonic Human processed_pseudogene chr14:35409222 chr14:35409222 . . 0 21 hm6Am_associated_SNPs_11191 0 0 0 1 35409202 35409222 mRNA hsa-miR-143 C14orf19 miRanda miRanda
435 chr19 51376749 51376749 1 + C A UCEC 51376749 + 51376729 51376769 41 CATGTGGGACCTGGTTCTCTCCATCGCCTTGTCTGTGGGGT CATGTGGGACCTGGTTCTCTACATCGCCTTGTCTGTGGGGT Direct Gain 0 0.965758907775756 NA NA prediction 0.931517815551511 Functional Gain - KLK2 ENSG00000167751 CDS Human protein_coding chr19:51376749 chr19:51376749 nonsynonymous SNV 0.000 1 21 hm6Am_associated_SNPs_11893 0 0 0 1 51376732 51376751 mRNA hsa-miR-185 KLK2 miRanda miRanda
436 chr5 112312615 112312615 1 + G A UCS 112312615 + 112312595 112312635 41 AGCCGGGATGCACTGTTCCTGCTGTGGGTCCTCATCATGGA AGCCGGGATGCACTGTTCCTACTGTGGGTCCTCATCATGGA Direct Gain 0 0.963365492372505 NA NA prediction 0.926730984745011 Functional Gain - DCP2 ENSG00000172795 CDS Human protein_coding chr5:112312615 chr5:112312615 unknown . 0 21 hm6Am_associated_SNPs_13074 0 0 1 2 112312598 112312619 mRNA hsa-miR-214 DCP2 miRanda miRanda
437 chr5 112312615 112312615 1 + G A UCS 112312615 + 112312595 112312635 41 AGCCGGGATGCACTGTTCCTGCTGTGGGTCCTCATCATGGA AGCCGGGATGCACTGTTCCTACTGTGGGTCCTCATCATGGA Direct Gain 0 0.963365492372505 NA NA prediction 0.926730984745011 Functional Gain - DCP2 ENSG00000172795 CDS Human protein_coding chr5:112312615 chr5:112312615 unknown . 0 21 hm6Am_associated_SNPs_13074 0 0 1 2 112312597 112312616 mRNA hsa-miR-873 DCP2 miRanda miRanda