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View the Ψ-site from experiment or transcriptome-wide prediction

Note: probability refers to the score of each site obtained from PIANO predictor


Ψ_ID Species Chromosome Position Strand Gene Symbol P-value Likelihood Rate RBP miRNA Target Splicing Site SNP Number JBrowse

Column name Description
Ψ_ID The ID of the Ψ site
Chromosome The location of the Ψ site on the chromosome
Start/End The initial/end position of Ψ site on chromosome
Strand The strand ("+" or "-") that Ψ site locates
Gene Symbol The gene symbol where Ψ site locates
Likelihood Ratio P(observation | status=ψ) / P(observation | status=T). A larger likelihood ratio suggests it is more likely to be a ψ site. The calculated likelihood ratio is capped at ‘99’, and a likelihood ratio of ‘100’ suggests that it is an experiment-validated ψ site