Tool

m7GSNPer

A real-time analysis module to assess the impact of genetic variants on database collection

The following options are available:

The input: Standard VCF file
Genome Assembly: Genome assembly selected for analysis. (default: Human/hg38)
Modification Type: Modification type selected for analysis. (default: m7G)
Association Level: The association level (AL) between genetic variant and RNA modification site, AL ranges from 0 to 1 with 1 indicating the greatest impact of the variant on modification status. Users can tune this value. (default: 0.4)
Prediction Mode: Two prediction modes are available. Experimentally validated m7G datasets mode: the uploaded SNPs will be analyzed to assess their impact on the collected m7G datasets. This will report predicted m7G-loss variants in high and medium confidence levels, respectively. Transcriptome-wide prediction mode: the m7GSNPer predicts the impact of reference- and mutated-sequences (altered by the uploaded SNPs) around transcriptome-wide guanosines, reporting m7G-loss and m7G-gain variants in the low confidence level.
E-mail Address: A notification will be sent to the Email when your job is finished

Genome Assembly

Modification Type

Association Level

Prediction Mode

E-mail Address: (Recommended)

Input Data (Standard VCF): *Note: Please see example VCF input provided.

Upoad VCF File：

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