Location
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Personal Info
- Kunqi Chen
- Xi'an Jiaotong-Liverpool University
111 Ren'ai Road, Suzhou, Jiangsu,
215123, China - E-mail to Kunqi.Chen@liverpool.ac.uk
Reference
[1] Yujiao Tang, Kunqi Chen, Bowen Song, Jiongming Ma, Xiangyu Wu, Qingru Xu, Zhen Wei, Jionglong Su, Gang Liu, Rong Rong, Zhiliang Lu, João Pedro de Magalhães, Daniel J Rigden, Jia Meng, m6A-Atlas: a comprehensive knowledgebase for unraveling the N6-methyladenosine (m6A) epitranscriptome, Nucleic Acids Research, , gkaa692, https://doi.org/10.1093/nar/gkaa692
Related Work
- MODOMICS
MODOMICS is a database of RNA modifications that provides comprehensive information concerning the chemical structures of modified ribonucleosides, their biosynthetic pathways, the location of modified residues in RNA sequences, and RNA-modifying enzymes. - Met-DB v2.0
Met-DB v2.0, the significantly improved second version of Met-DB, which is entirely redesigned to focus more on elucidating context-specific m6A functions. Met-DB v2.0 has a major increase in context-specific m6A peaks and single-base sites predicted from 185 samples for 7 species from 26 independent studies. - RMBase v2.0
RMBase v2.0 is a comprehensive database that integrates epitranscriptome sequencing data for the exploration of post-transcriptional modifications of RNAs and their relationships with miRNA binding events, disease-related single-nucleotide polymorphisms (SNPs) and RNA-binding proteins (RBPs). - CVm6A
CVm6A identified 340,950 and 179,201 m6A peaks from 23 human and eight mouse cell lines respectively, and classified them according to subcellular components, gene regions and relevance to cancers. - REPIC
The REPIC (RNA Epitranscriptome Collection) database records about 10 million peaks called from publicly available m6A-seq and MeRIP-seq data using our unified pipeline. These data were collected from 672 samples of 49 studies, covering 61 cell lines or tissues in 11 organisms. - RNAmod
RNAmod is an interactive, one-stop, web-based platform for the automated analysis, annotation, and visualization of mRNA modifications in 21 species. . - m6AVar
m6AVar is a comprehensive database of m6A-associated variants that potentially influence m6A modification, which will help to interpret variants by m6A function.
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