m6A-TSHub
: unveiling the context-specific m6A methylation and m6A-affecting mutations in 23 human tissues
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m6A-CAVar:
1, Query the somatic cancer-related m6A-associated variants in the corresponding cancer originating tissues
m6A-CAVar:
2, Query the somatic cancer-related m6A-associated variants by cancer type (by default: TCGA-LUAD)
Cancer Type
Lung Adenocarcinoma (TCGA-LUAD)
Bladder Urothelial Carcinoma (TCGA-BLCA)
Colon Adenocarcinoma (TCGA-COAD)
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma (TCGA-DLBC)
Glioblastoma Multiforme (TCGA-GBM)
Kidney Renal Clear Cell Carcinoma (TCGA-KIRC)
Acute Myeloid Leukemia (TCGA-LAML)
Liver Hepatocellular Carcinoma (TCGA-LIHC)
Ovarian Serous Cystadenocarcinoma (TCGA-OV)
Prostate Adenocarcinoma (TCGA-PRAD)
Sarcoma (TCGA-SARC)
Skin Cutaneous Melanoma (TCGA-SKCM)
Stomach Adenocarcinoma (TCGA-STAD)
Uterine Corpus Endometrial Carcinoma (TCGA-UCEC)
Lung Squamous Cell Carcinoma (TCGA-LUSC)
Mesothelioma (TCGA-MESO)
Brain Lower Grade Glioma (TCGA-LGG)
Kidney Chromophobe (TCGA-KICH)
Kidney Renal Papillary Cell Carcinoma (TCGA-KIRP)
Cholangiocarcinoma (TCGA-CHOL)
Adrenocortical Carcinoma (TCGA-ACC)
Pheochromocytoma and Paraganglioma (TCGA-PCPG)
Rectum Adenocarcinoma (TCGA-READ)
Thymoma (TCGA-THYM)
Testicular Germ Cell Tumors (TCGA-TGCT)
Thyroid Carcinoma (TCGA-THCA)
Pancreatic Adenocarcinoma (TCGA-PAAD)
Gene Type:
ALL
Protein Coding
LincRNA
miRNA
snoRNA
snRNA
Pseudogene
m6A Status:
ALL
Functional Loss
Functional Gain
Confidence Level:
ALL
High Confidence Level
Medium Confidence Level
Low Confidence Level
Filter Columns
(*Multiple filters, e.g., click 'ClinVar' box to filter variants with ClinVar associations only)
RBP
miRNA Target
Splicing Site
GWAS
ClinVar
Absolute Rankning Top 1%
Absolute Rankning Top 5%
Sample Count > 1
# Variants > 1000
Reset
Note: Select more columns
CAVar_ID
TCGA Project
Primary Tissue
Chromosome
Sample ID
Sample Count
# Variants
Absolue Rankning (p-value)
Gene
Gene Region
Gene Type
Rs ID
m6A Status
Confidence Level
RBP
miRNA Target
Splicing Site
GWAS
ClinVar
JBrowse
m6A-CAVar_ID
TCGA Project
Primary Tissue
Chromosome
Sample ID
Sample Count
# Variants
Absolue Rankning (p-value)
Gene
Gene Region
Gene Type
Rs ID
m6A Status
Confidence Level
RBP
miRNA Target
Splicing Site
GWAS
ClinVar
JBrowse
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