m6A-TSHub: unveiling the context-specific m6A methylation and m6A-affecting mutations in 23 human tissues
To Top m6A-associated Variant m6A Peak (Normal Tissue) m6A Peak (Cancer Cell Line) Project Script

Download Data: Cancer m6A-associated variant

Cancer Type Primary Tissue Ref-Annotation Download
Lung Adenocarcinoma (TCGA-LUAD) Lung GRCh37.p13 CSV
Bladder Urothelial Carcinoma (TCGA-BLCA) Bladder GRCh37.p13 CSV
Colon Adenocarcinoma (TCGA-COAD) Colon GRCh37.p13 CSV
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma (TCGA-DLBC) Lymph Nodes GRCh37.p13 CSV
Glioblastoma Multiforme (TCGA-GBM) Brain GRCh37.p13 CSV
Kidney Renal Clear Cell Carcinoma (TCGA-KIRC) Kidney GRCh37.p13 CSV
Acute Myeloid Leukemia (TCGA-LAML) Bone Marrow GRCh37.p13 CSV
Liver Hepatocellular Carcinoma (TCGA-LIHC) Liver GRCh37.p13 CSV
Ovarian Serous Cystadenocarcinoma (TCGA-OV) Ovary GRCh37.p13 CSV
Prostate Adenocarcinoma (TCGA-PRAD) Prostate GRCh37.p13 CSV
Sarcoma (TCGA-SARC) Soft Tissue GRCh37.p13 CSV
Skin Cutaneous Melanoma (TCGA-SKCM) Skin GRCh37.p13 CSV
Stomach Adenocarcinoma (TCGA-STAD) Stomach GRCh37.p13 CSV
Uterine Corpus Endometrial Carcinoma (TCGA-UCEC) Uterus GRCh37.p13 CSV
Lung Squamous Cell Carcinoma (TCGA-LUSC) Lung GRCh37.p13 CSV
Mesothelioma (TCGA-MESO) Heart GRCh37.p13 CSV
Brain Lower Grade Glioma (TCGA-LGG) Brain GRCh37.p13 CSV
Kidney Chromophobe (TCGA-KICH) Kidney GRCh37.p13 CSV
Kidney Renal Papillary Cell Carcinoma (TCGA-KIRP) Kidney GRCh37.p13 CSV
Cholangiocarcinoma (TCGA-CHOL) Liver GRCh37.p13 CSV
Adrenocortical Carcinoma (TCGA-ACC) Adrenal Gland GRCh37.p13 CSV
Pheochromocytoma and Paraganglioma (TCGA-PCPG) Adrenal Gland GRCh37.p13 CSV
Rectum Adenocarcinoma (TCGA-READ) Rectum GRCh37.p13 CSV
Thymoma (TCGA-THYM) Heart GRCh37.p13 CSV
Testicular Germ Cell Tumors (TCGA-TGCT) Testis GRCh37.p13 CSV
Thyroid Carcinoma (TCGA-THCA) Thyroid GRCh37.p13 CSV
Pancreatic Adenocarcinoma (TCGA-PAAD) Pancreas GRCh37.p13 CSV
All Projects All GRCh37.p13 ZIP


Download Data: m6A Peak (Normal Tissue)

Tissue Pubmed Supported Study Ref-Annotation Download
Lung 31676230 CRA001315/Lung-donor GRCh37.p13 CSV
Urinary Bladder 31676230 CRA001315/Bladder-donor GRCh37.p13 CSV
Colon 31676230 CRA001315/Colon-donor GRCh37.p13 CSV
Lymph Nodes 31676230 CRA001315/Lymph Nodes-donor GRCh37.p13 CSV
Brain Cerebrum 31676230 CRA001315/Brain Cerebrum-donor GRCh37.p13 CSV
Brain Cerebellum 31676230 CRA001315/Brain Cerebellum-donor GRCh37.p13 CSV
Brain Hypothalamus 31676230 CRA001315/Brain Hypothalamus-donor GRCh37.p13 CSV
Brain Brainstem 31676230 CRA001315/Brain Brainstem-donor GRCh37.p13 CSV
Kidney 31676230 CRA001315/Kidney-donor GRCh37.p13 CSV
Bone Marrow 31676230 CRA001315/Bone Marrow-donor GRCh37.p13 CSV
Liver 31676230 CRA001315/Liver-donor GRCh37.p13 CSV
Ovary 31676230 CRA001315/Ovary-donor GRCh37.p13 CSV
Prostate 31676230 CRA001315/Prostate-donor GRCh37.p13 CSV
Soft Tissue 31676230 CRA001315/Soft Tissue-donor GRCh37.p13 CSV
Skin 31676230 CRA001315/Skin-donor GRCh37.p13 CSV
Stomach 31676230 CRA001315/Stomach-donor GRCh37.p13 CSV
Uterus 31676230 CRA001315/Uterus-donor GRCh37.p13 CSV
Heart 31676230 CRA001315/Heart-donor GRCh37.p13 CSV
Adrenal Gland 31676230 CRA001315/Adrenal Gland-donor GRCh37.p13 CSV
Rectum 31676230 CRA001315/Rectum-donor GRCh37.p13 CSV
Testis 31676230 CRA001315/Testis-donor GRCh37.p13 CSV
Thyroid 31676230 CRA001315/Thyroid-donor GRCh37.p13 CSV
Pancreas 31676230 CRA001315/Pancreas-donor GRCh37.p13 CSV
Normal Tissue All All All GRCh37.p13 ZIP

Download Data: m6A Peak (Cancer Cell Line)

Cancer Cell Line Pubmed Supported Study Ref-Annotation Download
A549 24981863
27117702		 GSE55572
GSE76367		 GRCh37.p13 CSV
H1299 27117702 GSE76367 GRCh37.p13 CSV
BCa5637 30659266 PRJNA498900 GRCh37.p13 CSV
HT29 31676230 CRA001315 GRCh37.p13 CSV
HCT116 31619268 GSE129716 GRCh37.p13 CSV
OCI-Ly1 30867593 GSE130892 GRCh37.p13 CSV
U251 31676230 CRA001315 GRCh37.p13 CSV
GOS-3 31676230 CRA001315 GRCh37.p13 CSV
PBT003 28297667 GSE94808 GRCh37.p13 CSV
iSLK.219 29659627 GSE104621 GRCh37.p13 CSV
MOLM13 29186125 GSE94613 GRCh37.p13 CSV
THP1 32402251 GSE128575 GRCh37.p13 CSV
NOMO-1 29249359 GSE87190 GRCh37.p13 CSV
MONO-MAC-6 28017614 GSE76414 GRCh37.p13 CSV
MA9.3ITD 29249359 GSE87190 GRCh37.p13 CSV
HepG2 29476152
30531910
30867593		 GSE90642
GSE102336
GSE110320		 GRCh37.p13 CSV
Huh7 31810760 GSE138730 GRCh37.p13 CSV
SMMC7721 31735169 GSE120860 GRCh37.p13 CSV
HCCLM3 32772918 GSE149510 GRCh37.p13 CSV
POE1 30967398 GSE119963 GRCh37.p13 CSV
Cd-RWPE-1 30796352 GSE112970 GRCh37.p13 CSV
Mel624 31279659 GSE122803 GRCh37.p13 CSV
BGC823 31607270 GSE133132 GRCh37.p13 CSV
HEC-1-A 30154548 GSE93911 GRCh37.p13 CSV
U20S 31676230 CRA001315 GRCh37.p13 CSV
Tumor Condition All All All GRCh37.p13 ZIP


Download Data: Project Script

File Name Uploaded Date Download
Project Script 02/Dec/2021 Click
hg19ToHg38.over.chain 02/Dec/2021 Click